RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8438
(270 letters)
>gnl|CDD|216556 pfam01532, Glyco_hydro_47, Glycosyl hydrolase family 47. Members
of this family are alpha-mannosidases that catalyze the
hydrolysis of the terminal 1,2-linked alpha-D-mannose
residues in the oligo-mannose oligosaccharide
Man(9)(GlcNAc)(2).
Length = 445
Score = 156 bits (398), Expect = 4e-45
Identities = 59/109 (54%), Positives = 73/109 (66%), Gaps = 3/109 (2%)
Query: 116 AFRHAWSAYKKYAWGQDMLKPLSKSAHKWF-GLGLTIVDSLDTMWIMGLHDEFAEASGWV 174
AF HAW YKKYAWG D L+P+S F G G T+VDSLDT++IMGL DEF EA WV
Sbjct: 1 AFLHAWDGYKKYAWGHDELRPISCRGRDSFGGWGATLVDSLDTLYIMGLTDEFEEAVDWV 60
Query: 175 RDEFRPSLESSTADVNLFEATIRVLGGLLSAYHFSADDLFISKALDIGE 223
+ + + DV++FE TIR LGGLLSAY S DDL + KA+D+ +
Sbjct: 61 EKKLD--FDKDSTDVSVFETTIRYLGGLLSAYDLSGDDLLLEKAVDLAD 107
Score = 123 bits (311), Expect = 2e-32
Identities = 47/92 (51%), Positives = 60/92 (65%), Gaps = 3/92 (3%)
Query: 2 LKPLSKSAHKWF-GLGLTIVDSLDTMWIMGLHDEFTEASGWVRDEFRPSLESSTADVNLF 60
L+P+S F G G T+VDSLDT++IMGL DEF EA WV + + + DV++F
Sbjct: 19 LRPISCRGRDSFGGWGATLVDSLDTLYIMGLTDEFEEAVDWVEKKLD--FDKDSTDVSVF 76
Query: 61 EATIRVLGGLLSAYHFSADDLFISKALDIGDI 92
E TIR LGGLLSAY S DDL + KA+D+ D
Sbjct: 77 ETTIRYLGGLLSAYDLSGDDLLLEKAVDLADR 108
Score = 74.9 bits (185), Expect = 2e-15
Identities = 27/51 (52%), Positives = 35/51 (68%)
Query: 220 DIGENSKGADLYVHTNDAHYLLRPEFLESLFVMYQLTGNTTYQEWGWKIFQ 270
+ D YV D+HYLLRPE +ESLF +Y+LTG+ Y+EWGW+IFQ
Sbjct: 328 CPCWDEDKWDFYVKIADSHYLLRPETIESLFYLYRLTGDPKYREWGWEIFQ 378
>gnl|CDD|240427 PTZ00470, PTZ00470, glycoside hydrolase family 47 protein;
Provisional.
Length = 522
Score = 154 bits (392), Expect = 1e-43
Identities = 59/124 (47%), Positives = 82/124 (66%), Gaps = 1/124 (0%)
Query: 100 IYFSKQTNARQRAVVDAFRHAWSAYKKYAWGQDMLKPLSKSAHKWFGLGLTIVDSLDTMW 159
K R+ +V +A +HAW YK+YAWG D L+PL+K H+WFGLGLTI+DSLDT+
Sbjct: 63 YQNEKLNIKRRESVREAMKHAWEGYKEYAWGHDELRPLTKRHHEWFGLGLTIIDSLDTLK 122
Query: 160 IMGLHDEFAEASGWVRDEFRPSLESSTADVNLFEATIRVLGGLLSAYHFSADDLFISKAL 219
IMGL E+ E WV + + + V++FE TIRVLGGLLSAY + D++++ KA
Sbjct: 123 IMGLKKEYKEGRDWVANNL-KQSKDTGLGVSVFETTIRVLGGLLSAYDLTGDEMYLEKAR 181
Query: 220 DIGE 223
+I +
Sbjct: 182 EIAD 185
Score = 113 bits (285), Expect = 1e-28
Identities = 46/90 (51%), Positives = 63/90 (70%), Gaps = 1/90 (1%)
Query: 2 LKPLSKSAHKWFGLGLTIVDSLDTMWIMGLHDEFTEASGWVRDEFRPSLESSTADVNLFE 61
L+PL+K H+WFGLGLTI+DSLDT+ IMGL E+ E WV + + + V++FE
Sbjct: 97 LRPLTKRHHEWFGLGLTIIDSLDTLKIMGLKKEYKEGRDWVANNL-KQSKDTGLGVSVFE 155
Query: 62 ATIRVLGGLLSAYHFSADDLFISKALDIGD 91
TIRVLGGLLSAY + D++++ KA +I D
Sbjct: 156 TTIRVLGGLLSAYDLTGDEMYLEKAREIAD 185
Score = 73.6 bits (181), Expect = 7e-15
Identities = 23/47 (48%), Positives = 36/47 (76%)
Query: 224 NSKGADLYVHTNDAHYLLRPEFLESLFVMYQLTGNTTYQEWGWKIFQ 270
+ D+ + +D+HY+LRPE +ES+F++Y+LTG+ Y+EW WKIFQ
Sbjct: 405 DPNSGDISPNVHDSHYILRPETVESIFILYRLTGDPKYREWAWKIFQ 451
>gnl|CDD|238875 cd01837, SGNH_plant_lipase_like, SGNH_plant_lipase_like, a plant
specific subfamily of the SGNH-family of hydrolases, a
diverse family of lipases and esterases. The tertiary
fold of the enzyme is substantially different from that
of the alpha/beta hydrolase family and unique among all
known hydrolases; its active site closely resembles the
Ser-His-Asp(Glu) triad found in other serine hydrolases.
Length = 315
Score = 29.1 bits (66), Expect = 2.3
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 57 VNLFEATIRVLGGLLSAYHFSADDLFISKALDIGDIGSNSIKPIYFSKQT 106
+ F+ L L+ A +SK+L + IGSN YF+ T
Sbjct: 104 LEYFKEYKERLRALVGE---EAAADILSKSLFLISIGSNDYLNNYFANPT 150
>gnl|CDD|224455 COG1538, TolC, Outer membrane protein [Cell envelope biogenesis,
outer membrane / Intracellular trafficking and
secretion].
Length = 457
Score = 29.0 bits (65), Expect = 2.5
Identities = 17/111 (15%), Positives = 31/111 (27%), Gaps = 26/111 (23%)
Query: 47 RPSLESSTADVNLFEATIRV----------LGGLLSAYHFSADDLFISKALDIGDIGSNS 96
RP + ++ A + A I L + LF S + S
Sbjct: 268 RPDILAAEAQLAAANANIGAARAAFLPTLSLTASYGRSSTNLSGLFGSSSRSWSVGPGLS 327
Query: 97 IKPIYFSKQTNAR---------------QRAVVDAFRHAWSAYKKYAWGQD 132
+ PI+ + AR ++ V+ A + A +
Sbjct: 328 L-PIFDGGRLRARVRQAEAQYDAALAQYEQTVLTARQEVADALAALEAALE 377
>gnl|CDD|237272 PRK13017, PRK13017, dihydroxy-acid dehydratase; Provisional.
Length = 596
Score = 29.2 bits (66), Expect = 2.6
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 174 VRDEFRPSLESSTADVNLFEATIRVLGGLLSAYHFSADDLFISKALDIGENS 225
+ +EFR S D N FE V G YH DD ALDI E+
Sbjct: 403 ISEEFRERYLSEPGDENAFEGRAVVFDG-PEDYHARIDD----PALDIDEHC 449
>gnl|CDD|236563 PRK09554, feoB, ferrous iron transport protein B; Reviewed.
Length = 772
Score = 28.5 bits (64), Expect = 5.0
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 85 KALDIGDIGS-NSIKPIYFSKQTNARQR 111
K L IG IG+ NS K F++ T ARQR
Sbjct: 2 KKLTIGLIGNPNSGKTTLFNQLTGARQR 29
>gnl|CDD|165210 PHA02881, PHA02881, hypothetical protein; Provisional.
Length = 161
Score = 26.8 bits (59), Expect = 7.9
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 56 DVNLFEATIRVLGGLLSAYHFSADDLFISKALDIG 90
D+++F I + GLL +Y+F D ++ +DIG
Sbjct: 19 DISMFSPNI-IYSGLLDSYNFGFVDALLATNIDIG 52
Score = 26.8 bits (59), Expect = 7.9
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 188 DVNLFEATIRVLGGLLSAYHFSADDLFISKALDIG 222
D+++F I + GLL +Y+F D ++ +DIG
Sbjct: 19 DISMFSPNI-IYSGLLDSYNFGFVDALLATNIDIG 52
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.135 0.421
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,730,097
Number of extensions: 1277207
Number of successful extensions: 1086
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1080
Number of HSP's successfully gapped: 23
Length of query: 270
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 175
Effective length of database: 6,723,972
Effective search space: 1176695100
Effective search space used: 1176695100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.0 bits)