RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8438
(270 letters)
>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1,
2-alpha-mannosidase; substrate analogue, glycosyl
hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP:
a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A
Length = 538
Score = 166 bits (422), Expect = 3e-48
Identities = 68/121 (56%), Positives = 83/121 (68%), Gaps = 3/121 (2%)
Query: 103 SKQTNARQRAVVDAFRHAWSAYKKYAWGQDMLKPLSKSAHKWFGLGLTIVDSLDTMWIMG 162
N RQ+ V+D F HAW Y+K+AWG D LKP+S+S +WFGLGLT++D+LDTMWI+G
Sbjct: 82 PVHLNYRQKGVIDVFLHAWKGYRKFAWGHDELKPVSRSFSEWFGLGLTLIDALDTMWILG 141
Query: 163 LHDEFAEASGWVRDEFRPSLESSTADVNLFEATIRVLGGLLSAYHFSADDLFISKALDIG 222
L EF EA WV + DVNLFE+TIR+LGGLLSAYH S D LF+ KA D G
Sbjct: 142 LRKEFEEARKWVSKKLH---FEKDVDVNLFESTIRILGGLLSAYHLSGDSLFLRKAEDFG 198
Query: 223 E 223
Sbjct: 199 N 199
Score = 120 bits (301), Expect = 3e-31
Identities = 53/91 (58%), Positives = 65/91 (71%), Gaps = 3/91 (3%)
Query: 2 LKPLSKSAHKWFGLGLTIVDSLDTMWIMGLHDEFTEASGWVRDEFRPSLESSTADVNLFE 61
LKP+S+S +WFGLGLT++D+LDTMWI+GL EF EA WV + DVNLFE
Sbjct: 113 LKPVSRSFSEWFGLGLTLIDALDTMWILGLRKEFEEARKWVSKKLH---FEKDVDVNLFE 169
Query: 62 ATIRVLGGLLSAYHFSADDLFISKALDIGDI 92
+TIR+LGGLLSAYH S D LF+ KA D G+
Sbjct: 170 STIRILGGLLSAYHLSGDSLFLRKAEDFGNR 200
Score = 61.6 bits (149), Expect = 5e-11
Identities = 23/42 (54%), Positives = 31/42 (73%)
Query: 229 DLYVHTNDAHYLLRPEFLESLFVMYQLTGNTTYQEWGWKIFQ 270
D+ V D H LLRPE +ESLF +Y++TG+ YQ+WGW+I Q
Sbjct: 423 DVEVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWGWEILQ 464
>1hcu_A Alpha-1,2-mannosidase; glycosylation, glycosyl hydrolase; HET: NAG;
2.37A {Trichoderma reesei} SCOP: a.102.2.1
Length = 503
Score = 154 bits (390), Expect = 8e-44
Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 13/135 (9%)
Query: 102 FSKQTNARQRAVVDAFRHAWSAYKKYAWGQDMLKPLSKSAHKWF-GLGLTIVDSLDTMWI 160
R AV AF+ +W+AY +A+ D L P+S S G G + +D LDT +
Sbjct: 8 RGSPNPTRAAAVKAAFQTSWNAYHHFAFPHDDLHPVSNSFDDERNGWGSSAIDGLDTAIL 67
Query: 161 MGLHDEFAEASGWVRDEFRPSLESSTADVNLFEATIRVLGGLLSAYHFSAD--------- 211
MG D +V + + ++FE IR LGGLLSAY
Sbjct: 68 MGDADIVNTILQYVPQINFTTTAVANQGSSVFETNIRYLGGLLSAYDLLRGPFSSLATNQ 127
Query: 212 ---DLFISKALDIGE 223
+ + +A +
Sbjct: 128 TLVNSLLRQAQTLAN 142
Score = 109 bits (273), Expect = 2e-27
Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 13/104 (12%)
Query: 2 LKPLSKSAHKWF-GLGLTIVDSLDTMWIMGLHDEFTEASGWVRDEFRPSLESSTADVNLF 60
L P+S S G G + +D LDT +MG D +V + + ++F
Sbjct: 40 LHPVSNSFDDERNGWGSSAIDGLDTAILMGDADIVNTILQYVPQINFTTTAVANQGSSVF 99
Query: 61 EATIRVLGGLLSAYHFSAD------------DLFISKALDIGDI 92
E IR LGGLLSAY + + +A + +
Sbjct: 100 ETNIRYLGGLLSAYDLLRGPFSSLATNQTLVNSLLRQAQTLANG 143
Score = 65.3 bits (159), Expect = 3e-12
Identities = 14/66 (21%), Positives = 30/66 (45%)
Query: 205 AYHFSADDLFISKALDIGENSKGADLYVHTNDAHYLLRPEFLESLFVMYQLTGNTTYQEW 264
+ + + ++ + +Y+LRPE LESL+ Y++TG++ +Q+
Sbjct: 354 GFAWVDSVTGAGGSPPSSQSGFYSSAGFWVTAPYYILRPETLESLYYAYRVTGDSKWQDL 413
Query: 265 GWKIFQ 270
W+
Sbjct: 414 AWEALS 419
>1nxc_A Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; glycosidase,
structural genomics, PSI, protein initiative; HET: NAG
BMA MAN; 1.51A {Mus musculus} SCOP: a.102.2.1
Length = 478
Score = 150 bits (379), Expect = 2e-42
Identities = 49/125 (39%), Positives = 75/125 (60%), Gaps = 7/125 (5%)
Query: 103 SKQTNARQRAVVDAFRHAWSAYKKYAWGQDMLKPLSKSAHKWF----GLGLTIVDSLDTM 158
++ + + HAW+ YK+YAWG + LKP+SK H G TIVD+LDT+
Sbjct: 14 DATIREKRAKIKEMMTHAWNNYKRYAWGLNELKPISKEGHSSSLFGNIKGATIVDALDTL 73
Query: 159 WIMGLHDEFAEASGWVRDEFRPSLESSTADVNLFEATIRVLGGLLSAYHFSADDLFISKA 218
+IMG+ EF EA W++ + A+V++FE IR +GGLLSAY+ S +++F KA
Sbjct: 74 FIMGMKTEFQEAKSWIKKYLDF---NVNAEVSVFEVNIRFVGGLLSAYYLSGEEIFRKKA 130
Query: 219 LDIGE 223
+++G
Sbjct: 131 VELGV 135
Score = 104 bits (260), Expect = 1e-25
Identities = 40/95 (42%), Positives = 59/95 (62%), Gaps = 7/95 (7%)
Query: 2 LKPLSKSAHKWF----GLGLTIVDSLDTMWIMGLHDEFTEASGWVRDEFRPSLESSTADV 57
LKP+SK H G TIVD+LDT++IMG+ EF EA W++ + A+V
Sbjct: 45 LKPISKEGHSSSLFGNIKGATIVDALDTLFIMGMKTEFQEAKSWIKKYLDFN---VNAEV 101
Query: 58 NLFEATIRVLGGLLSAYHFSADDLFISKALDIGDI 92
++FE IR +GGLLSAY+ S +++F KA+++G
Sbjct: 102 SVFEVNIRFVGGLLSAYYLSGEEIFRKKAVELGVK 136
Score = 60.3 bits (146), Expect = 1e-10
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 224 NSKGADLYVHTNDAHYLLRPEFLESLFVMYQLTGNTTYQEWGWKIFQ 270
+ + N+ +Y+LRPE +E+ M++LT + Y+ W W+ +
Sbjct: 352 DGGVEAIATRQNEKYYILRPEVIETYMYMWRLTHDPKYRTWAWEAVE 398
>2ri9_A Mannosyl-oligosaccharide alpha-1,2-mannosidase; alternative
conformations, modulation of activity, glycoprot
glycosidase, hydrolase; HET: NAG NDG MAN MMA; 1.95A
{Penicillium citrinum} SCOP: a.102.2.1 PDB: 2ri8_A*
1kkt_A* 1kre_A* 1krf_A*
Length = 475
Score = 146 bits (370), Expect = 3e-41
Identities = 43/135 (31%), Positives = 61/135 (45%), Gaps = 16/135 (11%)
Query: 107 NARQRAVVDAFRHAWSAYKKYAWGQDMLKPLSKSAHKWF-GLGLTIVDSLDTMWIMGLHD 165
A+ AV +AF+HAW+ Y KYA+ D L P+S G G + VD+L T IMG D
Sbjct: 3 QAKADAVKEAFQHAWNGYMKYAFPHDELTPVSNGHADSRNGWGASAVDALSTAVIMGKAD 62
Query: 166 EFAEASGWVRDEFRPSLESSTADVNLFEATIRVLGGLLSAYHFSAD------------DL 213
V D ++ V+LFE TIR L G+LS Y D
Sbjct: 63 VVNAILEHVADI---DFSKTSDTVSLFETTIRYLAGMLSGYDLLQGPAKNLVDNQDLIDG 119
Query: 214 FISKALDIGENSKGA 228
+ ++ ++ + K A
Sbjct: 120 LLDQSRNLADVLKFA 134
Score = 100 bits (251), Expect = 2e-24
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 16/104 (15%)
Query: 2 LKPLSKSAHKWF-GLGLTIVDSLDTMWIMGLHDEFTEASGWVRDEFRPSLESSTADVNLF 60
L P+S G G + VD+L T IMG D V D ++ V+LF
Sbjct: 30 LTPVSNGHADSRNGWGASAVDALSTAVIMGKADVVNAILEHVADI---DFSKTSDTVSLF 86
Query: 61 EATIRVLGGLLSAYHFSAD------------DLFISKALDIGDI 92
E TIR L G+LS Y D + ++ ++ D+
Sbjct: 87 ETTIRYLAGMLSGYDLLQGPAKNLVDNQDLIDGLLDQSRNLADV 130
Score = 61.9 bits (150), Expect = 4e-11
Identities = 14/57 (24%), Positives = 27/57 (47%)
Query: 214 FISKALDIGENSKGADLYVHTNDAHYLLRPEFLESLFVMYQLTGNTTYQEWGWKIFQ 270
+ K + + + + Y+LRPE +ES + +++TG Y++W W F
Sbjct: 344 WDPKKVPSDQKEFYEKAGFYISSGSYVLRPEVIESFYYAHRVTGKEIYRDWVWNAFV 400
>1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel, hydrolase;
HET: NAG NDG BMA MAN; 1.54A {Saccharomyces cerevisiae}
SCOP: a.102.2.1 PDB: 1g6i_A*
Length = 511
Score = 136 bits (344), Expect = 2e-37
Identities = 43/134 (32%), Positives = 66/134 (49%), Gaps = 22/134 (16%)
Query: 109 RQRAVVDAFRHAWSAYKKYAWGQDMLKPLSKSAHKWFG----LGLTIVDSLDTMWIMG-- 162
+ + F +W Y K+ WG D+ P+ ++H LG IVDS+DT+ +M
Sbjct: 5 MRDRIESMFLESWRDYSKHGWGYDVYGPIEHTSHNMPRGNQPLGWIIVDSVDTLMLMYNS 64
Query: 163 -------LHDEFAEASGWVRDEFRPSLESSTADVNLFEATIRVLGGLLSAYHFSA----- 210
E + W+ D A+VN+FE TIR+LGGLLSAYH S
Sbjct: 65 STLYKSEFEAEIQRSEHWINDVLD---FDIDAEVNVFETTIRMLGGLLSAYHLSDVLEVG 121
Query: 211 -DDLFISKALDIGE 223
++++KA+D+G+
Sbjct: 122 NKTVYLNKAIDLGD 135
Score = 93.2 bits (231), Expect = 1e-21
Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 22/110 (20%)
Query: 2 LKPLSKSAHKWFG----LGLTIVDSLDTMWIMG---------LHDEFTEASGWVRDEFRP 48
P+ ++H LG IVDS+DT+ +M E + W+ D
Sbjct: 30 YGPIEHTSHNMPRGNQPLGWIIVDSVDTLMLMYNSSTLYKSEFEAEIQRSEHWINDVLD- 88
Query: 49 SLESSTADVNLFEATIRVLGGLLSAYHFSA------DDLFISKALDIGDI 92
A+VN+FE TIR+LGGLLSAYH S ++++KA+D+GD
Sbjct: 89 --FDIDAEVNVFETTIRMLGGLLSAYHLSDVLEVGNKTVYLNKAIDLGDR 136
Score = 64.7 bits (157), Expect = 4e-12
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 220 DIGENSKGADLYVHTNDAHYLLRPEFLESLFVMYQLTGNTTYQEWGWKIFQ 270
D S D +V D H L RPE +ES+ MY L+ + Y+EWG +I
Sbjct: 373 DGWWRSSVGDFFVKPLDRHNLQRPETVESIMFMYHLSHDHKYREWGAEIAT 423
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 4e-05
Identities = 55/356 (15%), Positives = 91/356 (25%), Gaps = 164/356 (46%)
Query: 2 LKPLSKSAHKWFGLGLTIVDSLD---TMWIMG--LHDEFT--------------EAS--- 39
+PL+ S H G ++ L + + L ++F E +
Sbjct: 6 TRPLTLS-H-----G-SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA 58
Query: 40 -------GWVRDEFRPSLESSTADV-----NLFEATIRVLGG------------------ 69
G+V PS V FE L G
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY--LEGNDIHALAAKLLQENDTTL 116
Query: 70 -----LLSAY--------------HFSADDLFISKALDIGDIGSNSIKPIY--FSKQTNA 108
L+ Y SA LF +A+ G+ + F Q N
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSA--LF--RAVGEGNAQ------LVAIFGGQGNT 166
Query: 109 RQRAVVDAFRHAWSAYKKY-----AWGQDMLKPLSKS---AHKWFGLGLTIVDSLDTMWI 160
+ R + Y + + L L ++ A K F GL I++ W+
Sbjct: 167 D--DYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE-----WL 219
Query: 161 MG---LHDE-----------------------FAEASGWVRDEFRPSLESSTADVNLFEA 194
D+ A+ G+ E R L+ +T
Sbjct: 220 ENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG------- 272
Query: 195 TIRVLGGLLSAYHFSADDLFISKALDIGENSKGADLYVHTNDAHYLLRPEFLESLF 250
GL++A + I++ +V A + LF
Sbjct: 273 ---HSQGLVTA-------VAIAETDS------WESFFVSVRKA--------ITVLF 304
Score = 36.6 bits (84), Expect = 0.008
Identities = 48/234 (20%), Positives = 73/234 (31%), Gaps = 75/234 (32%)
Query: 29 MG--LHDEFTEASG-WVR-DE-FRPSLESSTADV---NLFEATIRVLGGLLS-------- 72
MG L+ A W R D F+ + S D+ N TI GG
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIH-FGGEKGKRIRENYS 1689
Query: 73 --AYHFSADDLFISKALDIGDIGSNSIKPIYFS-----KQT-NARQRAVVDAFRHA-WSA 123
+ D ++ + +I +S + S T Q A+ A +
Sbjct: 1690 AMIFETIVDGKLKTEKI-FKEINEHSTSYTFRSEKGLLSATQFT-QPALT-LMEKAAFED 1746
Query: 124 YKKYAWGQDMLKPLSKS-A-HKWFGLGLTIVDSLDTMWIMGLHDEFAEASGWVRDEFRPS 181
K + G L P + A H SL G E+A A
Sbjct: 1747 LK--SKG---LIPADATFAGH-----------SL------G---EYA-A----------- 1769
Query: 182 LESSTADVNLFEATIRVLG--GLLSAYHFSADDLFISK----ALDIGENSKGAD 229
L +S ADV E+ + V+ G+ D+L S A++ G +
Sbjct: 1770 L-ASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFS 1822
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.4 bits (70), Expect = 0.38
Identities = 28/241 (11%), Positives = 69/241 (28%), Gaps = 48/241 (19%)
Query: 44 DEFRPSLESST---ADVNLFEATIRVL-GGLLSAYHFSADDLFISKALDIGDIGSN--SI 97
E+R + + ++ + ++ ++ + + +L + SI
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 98 KPIYFSKQTNARQ-----RAVVDAFRHAWSAYKKYAWGQDMLKPLSKSAHKWFGLGLTIV 152
IY + R++VD + K + D++ P ++
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYN----IPKTFDSD-DLIPPYLDQY--FY------- 474
Query: 153 DSLDTMWIMGLHDEFAEASGWVRDEFRPSLESSTADVNLFEATIRVLGGLLSAYHFSADD 212
+G H + E + FR D E IR +A +
Sbjct: 475 ------SHIGHHLKNIEHPERM-TLFRMVF----LDFRFLEQKIRHDSTAWNASGSILNT 523
Query: 213 L--------FISKALDIGENSKGADLYVH--TNDAHYLLRPEFLESLFVMYQLTGNTTYQ 262
L +I + + + + + L+ ++ + L + ++
Sbjct: 524 LQQLKFYKPYICD--NDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
Query: 263 E 263
E
Sbjct: 582 E 582
>2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT
like protease, serine protease; HET: NDG; 1.90A
{Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB:
1r64_A* 1ot5_A*
Length = 503
Score = 27.0 bits (59), Expect = 9.0
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 3/57 (5%)
Query: 64 IRVLGGLLSAYHFSADDLFISKALDIGDIGSNSIKPIYFSKQTNARQRAVVDAFRHA 120
IR+L G ++ + + LD+ DI S S P + V A
Sbjct: 130 IRILSGDITT---EDEAASLIYGLDVNDIYSCSWGPADDGRHLQGPSDLVKKALVKG 183
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.421
Gapped
Lambda K H
0.267 0.0542 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,157,253
Number of extensions: 239010
Number of successful extensions: 480
Number of sequences better than 10.0: 1
Number of HSP's gapped: 456
Number of HSP's successfully gapped: 32
Length of query: 270
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 178
Effective length of database: 4,133,061
Effective search space: 735684858
Effective search space used: 735684858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.8 bits)