RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8438
(270 letters)
>d1x9da1 a.102.2.1 (A:245-697) Class I alpha-1;2-mannosidase,
catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 453
Score = 157 bits (398), Expect = 7e-46
Identities = 68/117 (58%), Positives = 83/117 (70%), Gaps = 3/117 (2%)
Query: 107 NARQRAVVDAFRHAWSAYKKYAWGQDMLKPLSKSAHKWFGLGLTIVDSLDTMWIMGLHDE 166
N RQ+ V+D F HAW Y+K+AWG D LKP+S+S +WFGLGLT++D+LDTMWI+GL E
Sbjct: 3 NYRQKGVIDVFLHAWKGYRKFAWGHDELKPVSRSFSEWFGLGLTLIDALDTMWILGLRKE 62
Query: 167 FAEASGWVRDEFRPSLESSTADVNLFEATIRVLGGLLSAYHFSADDLFISKALDIGE 223
F EA WV + DVNLFE+TIR+LGGLLSAYH S D LF+ KA D G
Sbjct: 63 FEEARKWVSKKLHF---EKDVDVNLFESTIRILGGLLSAYHLSGDSLFLRKAEDFGN 116
Score = 115 bits (288), Expect = 5e-30
Identities = 53/91 (58%), Positives = 65/91 (71%), Gaps = 3/91 (3%)
Query: 2 LKPLSKSAHKWFGLGLTIVDSLDTMWIMGLHDEFTEASGWVRDEFRPSLESSTADVNLFE 61
LKP+S+S +WFGLGLT++D+LDTMWI+GL EF EA WV + DVNLFE
Sbjct: 30 LKPVSRSFSEWFGLGLTLIDALDTMWILGLRKEFEEARKWVSKKLHF---EKDVDVNLFE 86
Query: 62 ATIRVLGGLLSAYHFSADDLFISKALDIGDI 92
+TIR+LGGLLSAYH S D LF+ KA D G+
Sbjct: 87 STIRILGGLLSAYHLSGDSLFLRKAEDFGNR 117
Score = 63.5 bits (154), Expect = 4e-12
Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 219 LDIGENSKGADLYVHTNDAHYLLRPEFLESLFVMYQLTGNTTYQEWGWKIFQ 270
++ D+ V D H LLRPE +ESLF +Y++TG+ YQ+WGW+I Q
Sbjct: 330 FNLYPQPGRRDVEVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWGWEILQ 381
>d1hcua_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
domain {Trichoderma reesei [TaxId: 51453]}
Length = 488
Score = 143 bits (361), Expect = 3e-40
Identities = 47/199 (23%), Positives = 69/199 (34%), Gaps = 30/199 (15%)
Query: 102 FSKQTNARQRAVVDAFRHAWSAYKKYAWGQDMLKPLSKSAH-KWFGLGLTIVDSLDTMWI 160
R AV AF+ +W+AY +A+ D L P+S S + G G + +D LDT +
Sbjct: 2 RGSPNPTRAAAVKAAFQTSWNAYHHFAFPHDDLHPVSNSFDDERNGWGSSAIDGLDTAIL 61
Query: 161 MGLHDEFAEASGWVRDEFRPSLESSTADVNLFEATIRVLGGLLSAYHFSAD--------- 211
MG D +V + + ++FE IR LGGLLSAY
Sbjct: 62 MGDADIVNTILQYVPQINFTTTAVANQGSSVFETNIRYLGGLLSAYDLLRGPFSSLATNQ 121
Query: 212 ---DLFISKALDIGE--------NSKGADLYVHTNDAHYLLRPE---------FLESLFV 251
+ + +A + S D V N +
Sbjct: 122 TLVNSLLRQAQTLANGLKVAFTTPSGVPDPTVFFNPTVRRSGASSNNVAEIGSLVLEWTR 181
Query: 252 MYQLTGNTTYQEWGWKIFQ 270
+ LTGN Y + K
Sbjct: 182 LSDLTGNPQYAQLAQKGES 200
Score = 98.6 bits (245), Expect = 4e-24
Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 13/103 (12%)
Query: 2 LKPLSKSAH-KWFGLGLTIVDSLDTMWIMGLHDEFTEASGWVRDEFRPSLESSTADVNLF 60
L P+S S + G G + +D LDT +MG D +V + + ++F
Sbjct: 34 LHPVSNSFDDERNGWGSSAIDGLDTAILMGDADIVNTILQYVPQINFTTTAVANQGSSVF 93
Query: 61 EATIRVLGGLLSAYHFSAD------------DLFISKALDIGD 91
E IR LGGLLSAY + + +A + +
Sbjct: 94 ETNIRYLGGLLSAYDLLRGPFSSLATNQTLVNSLLRQAQTLAN 136
Score = 61.6 bits (149), Expect = 2e-11
Identities = 14/66 (21%), Positives = 30/66 (45%)
Query: 205 AYHFSADDLFISKALDIGENSKGADLYVHTNDAHYLLRPEFLESLFVMYQLTGNTTYQEW 264
+ + + ++ + +Y+LRPE LESL+ Y++TG++ +Q+
Sbjct: 348 GFAWVDSVTGAGGSPPSSQSGFYSSAGFWVTAPYYILRPETLESLYYAYRVTGDSKWQDL 407
Query: 265 GWKIFQ 270
W+
Sbjct: 408 AWEALS 413
>d1nxca_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 467
Score = 141 bits (356), Expect = 1e-39
Identities = 49/123 (39%), Positives = 75/123 (60%), Gaps = 7/123 (5%)
Query: 105 QTNARQRAVVDAFRHAWSAYKKYAWGQDMLKPLSKSAH----KWFGLGLTIVDSLDTMWI 160
++ + + HAW+ YK+YAWG + LKP+SK H G TIVD+LDT++I
Sbjct: 16 TIREKRAKIKEMMTHAWNNYKRYAWGLNELKPISKEGHSSSLFGNIKGATIVDALDTLFI 75
Query: 161 MGLHDEFAEASGWVRDEFRPSLESSTADVNLFEATIRVLGGLLSAYHFSADDLFISKALD 220
MG+ EF EA W++ + A+V++FE IR +GGLLSAY+ S +++F KA++
Sbjct: 76 MGMKTEFQEAKSWIKKYLDF---NVNAEVSVFEVNIRFVGGLLSAYYLSGEEIFRKKAVE 132
Query: 221 IGE 223
+G
Sbjct: 133 LGV 135
Score = 101 bits (252), Expect = 4e-25
Identities = 40/94 (42%), Positives = 59/94 (62%), Gaps = 7/94 (7%)
Query: 2 LKPLSKSAH----KWFGLGLTIVDSLDTMWIMGLHDEFTEASGWVRDEFRPSLESSTADV 57
LKP+SK H G TIVD+LDT++IMG+ EF EA W++ + A+V
Sbjct: 45 LKPISKEGHSSSLFGNIKGATIVDALDTLFIMGMKTEFQEAKSWIKKYLDF---NVNAEV 101
Query: 58 NLFEATIRVLGGLLSAYHFSADDLFISKALDIGD 91
++FE IR +GGLLSAY+ S +++F KA+++G
Sbjct: 102 SVFEVNIRFVGGLLSAYYLSGEEIFRKKAVELGV 135
Score = 59.3 bits (143), Expect = 9e-11
Identities = 40/244 (16%), Positives = 76/244 (31%), Gaps = 35/244 (14%)
Query: 52 SSTADVNLFEATIRVLGGLLSAYHFSADDLFISKALDIGDIGSNSIKP-------IYFSK 104
+S L E L + H S D +F K + I + + KP + S
Sbjct: 165 ASGGSSILAEFGTLHLE-FMHLSHLSGDPVFAEKVMKIRTVLNKLDKPEGLYPNYLNPSS 223
Query: 105 QTNARQRAVVDAFRHAWSAYKKYAWGQDMLKPLSKSAHKWFGLGLTIVDSLDTMWIMGLH 164
+ V ++ Y AW K+ + + V +++T I
Sbjct: 224 GQWGQHHVSVGGLGDSFYEYLLKAWLM-----SDKTDLEAKKMYFDAVQAIETHLIRKSS 278
Query: 165 DEFAEASGWVRDEFRPSLESSTADVNLFEATIRVLGGLLSAYHFSADDLFISKALDIG-- 222
+ W + T F + LG + + L + +
Sbjct: 279 GGLTYIAEWKGGLLEHKMGHLTC----FAGGMFALGADGAPEARAQHYLELGAEIARTCH 334
Query: 223 ----------------ENSKGADLYVHTNDAHYLLRPEFLESLFVMYQLTGNTTYQEWGW 266
+ + N+ +Y+LRPE +E+ M++LT + Y+ W W
Sbjct: 335 ESYNRTYVKLGPEAFRFDGGVEAIATRQNEKYYILRPEVIETYMYMWRLTHDPKYRTWAW 394
Query: 267 KIFQ 270
+ +
Sbjct: 395 EAVE 398
>d2ri9a1 a.102.2.1 (A:1036-1510) Class I alpha-1;2-mannosidase,
catalytic domain {Fungus (Penicillium citrinum) [TaxId:
5077]}
Length = 475
Score = 136 bits (343), Expect = 9e-38
Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 16/131 (12%)
Query: 106 TNARQRAVVDAFRHAWSAYKKYAWGQDMLKPLSKSAHKWF-GLGLTIVDSLDTMWIMGLH 164
A+ AV +AF+HAW+ Y KYA+ D L P+S G G + VD+L T IMG
Sbjct: 2 NQAKADAVKEAFQHAWNGYMKYAFPHDELTPVSNGHADSRNGWGASAVDALSTAVIMGKA 61
Query: 165 DEFAEASGWVRDEFRPSLESSTADVNLFEATIRVLGGLLSAYHFSAD------------D 212
D V D ++ V+LFE TIR L G+LS Y D
Sbjct: 62 DVVNAILEHVADIDFS---KTSDTVSLFETTIRYLAGMLSGYDLLQGPAKNLVDNQDLID 118
Query: 213 LFISKALDIGE 223
+ ++ ++ +
Sbjct: 119 GLLDQSRNLAD 129
Score = 94.4 bits (234), Expect = 1e-22
Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 16/103 (15%)
Query: 2 LKPLSKSAHKWF-GLGLTIVDSLDTMWIMGLHDEFTEASGWVRDEFRPSLESSTADVNLF 60
L P+S G G + VD+L T IMG D V D ++ V+LF
Sbjct: 30 LTPVSNGHADSRNGWGASAVDALSTAVIMGKADVVNAILEHVADIDFS---KTSDTVSLF 86
Query: 61 EATIRVLGGLLSAYHFSAD------------DLFISKALDIGD 91
E TIR L G+LS Y D + ++ ++ D
Sbjct: 87 ETTIRYLAGMLSGYDLLQGPAKNLVDNQDLIDGLLDQSRNLAD 129
Score = 61.2 bits (148), Expect = 2e-11
Identities = 14/57 (24%), Positives = 27/57 (47%)
Query: 214 FISKALDIGENSKGADLYVHTNDAHYLLRPEFLESLFVMYQLTGNTTYQEWGWKIFQ 270
+ K + + + + Y+LRPE +ES + +++TG Y++W W F
Sbjct: 344 WDPKKVPSDQKEFYEKAGFYISSGSYVLRPEVIESFYYAHRVTGKEIYRDWVWNAFV 400
>d1dl2a_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 511
Score = 129 bits (325), Expect = 4e-35
Identities = 54/202 (26%), Positives = 85/202 (42%), Gaps = 43/202 (21%)
Query: 109 RQRAVVDAFRHAWSAYKKYAWGQDMLKPLSKSAHKWFG----LGLTIVDSLDTMWIMG-- 162
+ + F +W Y K+ WG D+ P+ ++H LG IVDS+DT+ +M
Sbjct: 5 MRDRIESMFLESWRDYSKHGWGYDVYGPIEHTSHNMPRGNQPLGWIIVDSVDTLMLMYNS 64
Query: 163 -------LHDEFAEASGWVRDEFRPSLESSTADVNLFEATIRVLGGLLSAYHFSA----- 210
E + W+ D A+VN+FE TIR+LGGLLSAYH S
Sbjct: 65 STLYKSEFEAEIQRSEHWINDVLDF---DIDAEVNVFETTIRMLGGLLSAYHLSDVLEVG 121
Query: 211 -DDLFISKALDIGENSKGA-----------DLYVHTNDAHYLLRPEFLESL--------- 249
++++KA+D+G+ A + +H+ A S
Sbjct: 122 NKTVYLNKAIDLGDRLALAFLSTQTGIPYSSINLHSGQAVKNHADGGASSTAEFTTLQME 181
Query: 250 -FVMYQLTGNTTYQEWGWKIFQ 270
+ LTGN TY E ++++
Sbjct: 182 FKYLAYLTGNRTYWELVERVYE 203
Score = 92.1 bits (228), Expect = 9e-22
Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 22/110 (20%)
Query: 2 LKPLSKSAHKWFG----LGLTIVDSLDTMWIMG---------LHDEFTEASGWVRDEFRP 48
P+ ++H LG IVDS+DT+ +M E + W+ D
Sbjct: 30 YGPIEHTSHNMPRGNQPLGWIIVDSVDTLMLMYNSSTLYKSEFEAEIQRSEHWINDVLDF 89
Query: 49 SLESSTADVNLFEATIRVLGGLLSAYHFSA------DDLFISKALDIGDI 92
A+VN+FE TIR+LGGLLSAYH S ++++KA+D+GD
Sbjct: 90 D---IDAEVNVFETTIRMLGGLLSAYHLSDVLEVGNKTVYLNKAIDLGDR 136
Score = 68.2 bits (166), Expect = 1e-13
Identities = 36/164 (21%), Positives = 58/164 (35%), Gaps = 10/164 (6%)
Query: 115 DAFRHAWSAYKKYAWGQDMLKPLSKSAHKWFGLGLTI---VDSLDTMW----IMGLHDEF 167
D +R + KK+ Q L + GL + +D L G +
Sbjct: 262 DLYRKSMEGMKKHLLAQSKPSSLWYIGEREQGLHGQLSPKMDHLVCFMGGLLASGSTEGL 321
Query: 168 AEASGWVRDEFRPS-LESSTADVNLFEATIRVLGGLLSAYHFSADDLFISKALDIGENSK 226
+ R F S + + + + L+ +D + D S
Sbjct: 322 SIHEARRRPFFSKSDWDLAKGITDTCYQMYKQSSSGLAPEIVVFND--GNIKQDGWWRSS 379
Query: 227 GADLYVHTNDAHYLLRPEFLESLFVMYQLTGNTTYQEWGWKIFQ 270
D +V D H L RPE +ES+ MY L+ + Y+EWG +I
Sbjct: 380 VGDFFVKPLDRHNLQRPETVESIMFMYHLSHDHKYREWGAEIAT 423
>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis
[TaxId: 1423]}
Length = 363
Score = 28.5 bits (63), Expect = 0.81
Identities = 10/72 (13%), Positives = 24/72 (33%), Gaps = 1/72 (1%)
Query: 199 LGGLLSAYHFSADDLFISKALDIGENSKGADLYVHTNDAHYLLRPEFLESLFVMYQLTGN 258
L G+L + + + + A + + + L LF +Y+ T +
Sbjct: 37 LCGVLRLWEATGEKRYFEYAKAYADLLIDDNGNLLFRRDELDAIQAGL-ILFPLYEQTKD 95
Query: 259 TTYQEWGWKIFQ 270
Y + ++
Sbjct: 96 ERYVKAAKRLRS 107
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 106
Score = 24.8 bits (54), Expect = 7.0
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 41 WVRDEFRPSLESSTADVNLFEATIRVLGGLLSAYHFSADDL 81
W +E R +L S D+ + TI ++ ++ A +L
Sbjct: 42 WTTNELRNNLRSIEWDLEDLDETISIVEANPRKFNLDATEL 82
Score = 24.8 bits (54), Expect = 7.0
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 173 WVRDEFRPSLESSTADVNLFEATIRVLGGLLSAYHFSADDL 213
W +E R +L S D+ + TI ++ ++ A +L
Sbjct: 42 WTTNELRNNLRSIEWDLEDLDETISIVEANPRKFNLDATEL 82
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.135 0.421
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,016,103
Number of extensions: 44057
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 21
Length of query: 270
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 186
Effective length of database: 1,254,276
Effective search space: 233295336
Effective search space used: 233295336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.3 bits)