BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8439
         (671 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3LWT|X Chain X, Crystal Structure Of The Yeast Sac1: Implications For Its
           Phosphoinositide Phosphatase Function
          Length = 505

 Score =  289 bits (740), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 156/355 (43%), Positives = 214/355 (60%), Gaps = 22/355 (6%)

Query: 67  ADERFVWNKNI---LNQFNSSD--IGGFCVPVIHGFVSINKCTLNGKSFLWTLVSRRSCK 121
           ADERF WN  +   L  F   D  I  F  PVI+G+       LN    +  L++RRS  
Sbjct: 152 ADERFFWNHYLTEDLRNFAHQDPRIDSFIQPVIYGYAKTVDAVLNATPIVLGLITRRSIF 211

Query: 122 RAGTRLFTRGVDAEGNVANFVETEQIIEFEGYQS------SFVQIRGSIPLYWQQYPNXX 175
           RAGTR F RGVD +GNV NF ETEQI+  E  +S      SF+Q RGS+P+YW +  N  
Sbjct: 212 RAGTRYFRRGVDKDGNVGNFNETEQILLAENPESEKIHVFSFLQTRGSVPIYWAEINNLK 271

Query: 176 XXXXXXXXQENNNMEAVSKHFKSQEPYYGYQVILNLIDQHGDEGDIEKAYRTSIRILNSQ 235
                   +  N+++A  KHF  Q+  YG   ++NL++Q G E  +++ Y + +  LN  
Sbjct: 272 YKPNLVLGE--NSLDATKKHFDQQKELYGDNYLVNLVNQKGHELPVKEGYESVVHALNDP 329

Query: 236 RVQYEAFDFHKECRKMRWDRLQILIDRVAQ----TQDAFQTFLLLQKN--KLISAQEGVF 289
           ++ Y  FDFH ECRKM+W R+++LID + +     +D F   +    N  ++++ Q  V 
Sbjct: 330 KIHYVYFDFHHECRKMQWHRVKLLIDHLEKLGLSNEDFFHKVIDSNGNTVEIVNEQHSVV 389

Query: 290 RTNCIDCLDRTNVVQSMLAKRSLCIILKKLGISEVGEI--DNA-FEYLFKQVWADNADII 346
           RTNC+DCLDRTNVVQS+LA+  L    +   +   G    DNA     ++ +WADNAD +
Sbjct: 390 RTNCMDCLDRTNVVQSVLAQWVLQKEFESADVVATGSTWEDNAPLLTSYQNLWADNADAV 449

Query: 347 SIQYSGTGALKTDFTRTGKRTKVGMLNDLYNTLARYYKNNFQDGFRQDAIDLFLG 401
           S+ YSGTGALKTDFTRTGKRT++G  ND  N+ +RYY+NN+ DG RQD+ DLFLG
Sbjct: 450 SVAYSGTGALKTDFTRTGKRTRLGAFNDFLNSASRYYQNNWTDGPRQDSYDLFLG 504



 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 44/64 (68%), Positives = 53/64 (82%)

Query: 523 VWADNADIISIQYSGTGALKTDFTRTGKRTKAGMLNDLYNTLARYYKNNFQDGFRQDAID 582
           +WADNAD +S+ YSGTGALKTDFTRTGKRT+ G  ND  N+ +RYY+NN+ DG RQD+ D
Sbjct: 441 LWADNADAVSVAYSGTGALKTDFTRTGKRTRLGAFNDFLNSASRYYQNNWTDGPRQDSYD 500

Query: 583 LFLG 586
           LFLG
Sbjct: 501 LFLG 504


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.139    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,798,031
Number of Sequences: 62578
Number of extensions: 760486
Number of successful extensions: 1708
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1699
Number of HSP's gapped (non-prelim): 4
length of query: 671
length of database: 14,973,337
effective HSP length: 105
effective length of query: 566
effective length of database: 8,402,647
effective search space: 4755898202
effective search space used: 4755898202
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)