Query psy8439
Match_columns 671
No_of_seqs 376 out of 1189
Neff 6.0
Searched_HMMs 13730
Date Fri Aug 16 18:52:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8439.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8439hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1w32a_ c.1.8.3 (A:) Xylanase 26.8 53 0.0039 31.8 7.2 99 158-265 74-202 (346)
2 d1r85a_ c.1.8.3 (A:) Xylanase 13.1 55 0.004 32.1 3.5 57 189-246 125-197 (371)
3 d1cipa1 a.66.1.1 (A:61-181) Tr 13.1 1.2E+02 0.009 24.4 5.3 20 300-322 15-34 (121)
4 d1v54m_ f.23.7.1 (M:) Mitochon 12.9 27 0.0019 24.2 0.7 22 617-638 15-36 (43)
5 d1us3a2 c.1.8.3 (A:243-606) Xy 12.4 81 0.0059 30.3 4.5 53 159-212 86-141 (364)
6 d1azta1 a.66.1.1 (A:88-201) Tr 11.1 1.2E+02 0.009 24.5 4.6 21 329-351 57-77 (114)
7 d1n82a_ c.1.8.3 (A:) Xylanase 9.8 1.9E+02 0.014 26.8 6.3 51 158-208 75-127 (330)
8 d2bcjq1 a.66.1.1 (Q:67-183) Tr 9.0 2.4E+02 0.018 22.3 5.8 20 300-322 15-34 (117)
9 d1tada1 a.66.1.1 (A:57-177) Tr 8.8 2.3E+02 0.016 22.7 5.5 46 300-350 15-80 (121)
10 d1ur1a_ c.1.8.3 (A:) Xylanase 8.6 1.7E+02 0.013 27.9 5.4 75 188-265 105-195 (350)
No 1
>d1w32a_ c.1.8.3 (A:) Xylanase A, catalytic core {Pseudomonas fluorescens [TaxId: 294]}
Probab=26.76 E-value=53 Score=31.81 Aligned_cols=99 Identities=17% Similarity=0.289 Sum_probs=53.3
Q ss_pred EEeecccceeee---eCCCCCcCCCCcccCCCchHHHHHHHHHHhhhhcCC-ceEEecccc----C--------------
Q psy8439 158 VQIRGSIPLYWQ---QYPNLKLKPPPKIIQENNNMEAVSKHFKSQEPYYGY-QVILNLIDQ----H-------------- 215 (671)
Q Consensus 158 VQiRGSVPlfW~---Q~~~l~~kP~~~i~~~~~~~~a~~kHF~~L~~~YG~-~~~VNLl~~----k-------------- 215 (671)
+.+||-.+| |. |.|..-. ...++....+++|+..+..+|+. +..-+.+|. .
T Consensus 74 ~~vrGH~Lv-W~~~~~~P~w~~------~~~~~~~~~~~~~I~~v~~ry~g~i~~WDVvNE~i~~~~~~~~~~~~~~~~~ 146 (346)
T d1w32a_ 74 QTVHGHALV-WHPSYQLPNWAS------DSNANFRQDFARHIDTVAAHFAGQVKSWDVVNEALFDSADDPDGRGSANGYR 146 (346)
T ss_dssp CEEEEEEEE-CCCGGGCCTTCS------TTCTTHHHHHHHHHHHHHHHTTTTCSEEEEEECCBCCGGGCTTCCCEETTEE
T ss_pred CEEEEEeee-cCCcccCccccc------CCcHHHHHHHHHHHHHHHHhhCCcceEEEEEeeeccccccCccccccccccc
Confidence 456886554 64 3343211 12234568899999999999975 543333322 1
Q ss_pred --------CChhhHHHHHHHHHHHhCCCCcceeehhHHHHhhhcchhhHHHHHHHHHh
Q psy8439 216 --------GDEGDIEKAYRTSIRILNSQRVQYEAFDFHKECRKMRWDRLQILIDRVAQ 265 (671)
Q Consensus 216 --------g~E~~L~~ay~~~v~~l~~~~i~y~~fDfh~~ck~~~~~~l~~L~~~l~~ 265 (671)
+.+.-+..+|+.+=+. .|+++++.=||+-+..+.+-+.+-.+++.+.+
T Consensus 147 ~~~~~~~~~g~~yi~~aF~~Ar~~--dP~a~L~~Ndyn~~~~~~k~~~~~~lv~~L~~ 202 (346)
T d1w32a_ 147 QSVFYRQFGGPEYIDEAFRRARAA--DPTAELYYNDFNTEENGAKTTALVNLVQRLLN 202 (346)
T ss_dssp CCHHHHHHTSTHHHHHHHHHHHHH--CTTSEEEEEESSTTSCSHHHHHHHHHHHHHHH
T ss_pred cchhhhhccChHHHHHHHHHHHHh--CCCCEEEeccCCcccCcHHHHHHHHHHHHHHh
Confidence 1334566777776543 46666665566644322222333344444443
No 2
>d1r85a_ c.1.8.3 (A:) Xylanase {Bacillus stearothermophilus, Xt6 [TaxId: 1422]}
Probab=13.12 E-value=55 Score=32.08 Aligned_cols=57 Identities=14% Similarity=0.289 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhhhhc-CCce---EEe-ccccCC-----------ChhhHHHHHHHHHHHhCCCCcceeehhHHH
Q psy8439 189 MEAVSKHFKSQEPYY-GYQV---ILN-LIDQHG-----------DEGDIEKAYRTSIRILNSQRVQYEAFDFHK 246 (671)
Q Consensus 189 ~~a~~kHF~~L~~~Y-G~~~---~VN-Ll~~kg-----------~E~~L~~ay~~~v~~l~~~~i~y~~fDfh~ 246 (671)
...+++|+..+..+| |.+. +|| -++..+ .+.-+..+|+.+-+.. .+.++...=||+-
T Consensus 125 ~~~~~~~I~~v~~rY~g~I~~WDVvNE~~~~~~~~r~~~~~~~~g~dyi~~af~~A~~~~-~p~~~L~~Ndy~~ 197 (371)
T d1r85a_ 125 LKRLETHIKTIVERYKDDIKYWDVVNEVVGDDGKLRNSPWYQIAGIDYIKVAFQAARKYG-GDNIKLYMNDYNT 197 (371)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEEEESCBCTTSSBCCCHHHHHHTTHHHHHHHHHHHHHH-CTTSEEEEEESCT
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEEeecccCCCCcccCchhhccCcHHHHHHHHHHHHhc-CCcceeeeccccc
Confidence 456788999999999 5565 455 222211 2344667777765543 3444443334443
No 3
>d1cipa1 a.66.1.1 (A:61-181) Transducin (alpha subunit), insertion domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=13.10 E-value=1.2e+02 Score=24.38 Aligned_cols=20 Identities=25% Similarity=0.414 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCC
Q psy8439 300 TNVVQSMLAKRSLCIILKKLGIS 322 (671)
Q Consensus 300 TNvvQs~ia~~~L~~qL~~lgi~ 322 (671)
.|+++++ .+|-..+..+|+-
T Consensus 15 ~Ni~~~~---~~ll~a~~~l~i~ 34 (121)
T d1cipa1 15 SNTIQSI---IAIIRAMGRLKID 34 (121)
T ss_dssp HHHHHHH---HHHHHHHHHHTCC
T ss_pred HHHHHHH---HHHHHHHHHhCCC
Confidence 4666654 4556667777763
No 4
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=12.85 E-value=27 Score=24.16 Aligned_cols=22 Identities=18% Similarity=0.425 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhhhccCccchhh
Q psy8439 617 LVISMAMFFCNVIIPAEYTTKS 638 (671)
Q Consensus 617 ~~~~~~~~~~~~~~p~~~~~~~ 638 (671)
.++++.+++++++.|+++...+
T Consensus 15 ~aigLt~~f~~~L~PaGwVLsh 36 (43)
T d1v54m_ 15 QAIGLSVTFLSFLLPAGWVLYH 36 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccHHHHHHH
Confidence 4578888899999998875443
No 5
>d1us3a2 c.1.8.3 (A:243-606) Xylanase 10c {Cellvibrio japonicus [TaxId: 155077]}
Probab=12.37 E-value=81 Score=30.26 Aligned_cols=53 Identities=13% Similarity=0.222 Sum_probs=29.2
Q ss_pred EeecccceeeeeCCCCCcCCCCcccCCCchHHHHHHHHHHhhhhc---CCceEEecc
Q psy8439 159 QIRGSIPLYWQQYPNLKLKPPPKIIQENNNMEAVSKHFKSQEPYY---GYQVILNLI 212 (671)
Q Consensus 159 QiRGSVPlfW~Q~~~l~~kP~~~i~~~~~~~~a~~kHF~~L~~~Y---G~~~~VNLl 212 (671)
.+||-.++..++.+.-.+.+.. ....++...++++|+..+..+| |.+..-..+
T Consensus 86 ~v~GH~lvW~~~~~~~~~~~~~-~~~~~~~~~~~~~~I~~vv~ry~~~G~I~~WDVv 141 (364)
T d1us3a2 86 TVHGHALVWHSDYQVPNFMKNW-AGSAEDFLAALDTHITTIVDHYEAKGNLVSWDVV 141 (364)
T ss_dssp EEEEEEEEECCGGGSCHHHHTC-CSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred EEEEeecCCCcccCCccccccC-CccHHHHHHHHHHHHHHHHHhhccCCceEEEEEe
Confidence 4788866665543211110000 0111234577889999999999 667543333
No 6
>d1azta1 a.66.1.1 (A:88-201) Transducin (alpha subunit), insertion domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.05 E-value=1.2e+02 Score=24.50 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHhhHHHHHhhc
Q psy8439 329 NAFEYLFKQVWADNADIISIQYS 351 (671)
Q Consensus 329 ~~~~~~f~~lWadnGD~iS~qYa 351 (671)
+++....+.||.|.| |-..|.
T Consensus 57 ~e~~~~i~~LW~D~g--iq~~~~ 77 (114)
T d1azta1 57 PEFYEHAKALWEDEG--VRACYE 77 (114)
T ss_dssp HHHHHHHHHHHHSHH--HHHHHH
T ss_pred HHHHHHHHHHhCCHH--HHHHHH
Confidence 567788899999998 444453
No 7
>d1n82a_ c.1.8.3 (A:) Xylanase {Bacillus stearothermophilus, Ixt6 [TaxId: 1422]}
Probab=9.79 E-value=1.9e+02 Score=26.75 Aligned_cols=51 Identities=14% Similarity=0.248 Sum_probs=28.0
Q ss_pred EEeecccceeeeeCCCCCcCC-CCcccCCCchHHHHHHHHHHhhhhcC-CceE
Q psy8439 158 VQIRGSIPLYWQQYPNLKLKP-PPKIIQENNNMEAVSKHFKSQEPYYG-YQVI 208 (671)
Q Consensus 158 VQiRGSVPlfW~Q~~~l~~kP-~~~i~~~~~~~~a~~kHF~~L~~~YG-~~~~ 208 (671)
+-+||-..+...|.|..-..+ .......++-..++.+|...+.++|+ .+..
T Consensus 75 i~v~gh~lvw~~~~P~W~~~~~~~~~~~~~~~~~~~~~~i~~v~~ry~g~v~~ 127 (330)
T d1n82a_ 75 MAVRGHTLVWHNQTPDWVFQDGQGHFVSRDVLLERMKCHISTVVRRYKGKIYC 127 (330)
T ss_dssp CEEEEEEEEESSSCCGGGGBCSSSSBCCHHHHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CEEEEeecccCCCCCchhccCCcCCcCCHHHHHHHHHHHHHHHHHhcCCCcee
Confidence 346676444335555432211 11111122345788999999999996 4543
No 8
>d2bcjq1 a.66.1.1 (Q:67-183) Transducin (alpha subunit), insertion domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.97 E-value=2.4e+02 Score=22.33 Aligned_cols=20 Identities=20% Similarity=0.405 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCC
Q psy8439 300 TNVVQSMLAKRSLCIILKKLGIS 322 (671)
Q Consensus 300 TNvvQs~ia~~~L~~qL~~lgi~ 322 (671)
.|+++++ .+|-..+..+|+-
T Consensus 15 ~Nii~~m---~~ll~a~~~l~i~ 34 (117)
T d2bcjq1 15 QNIFTAM---QAMIRAMDTLKIP 34 (117)
T ss_dssp HHHHHHH---HHHHHHHHHHTCC
T ss_pred HHHHHHH---HHHHHHHHHcCCC
Confidence 4666654 3455566777763
No 9
>d1tada1 a.66.1.1 (A:57-177) Transducin (alpha subunit), insertion domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.78 E-value=2.3e+02 Score=22.71 Aligned_cols=46 Identities=17% Similarity=0.382 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCCC--------------------CChHHHHHHHHHHHHhhHHHHHhh
Q psy8439 300 TNVVQSMLAKRSLCIILKKLGISEVGE--------------------IDNAFEYLFKQVWADNADIISIQY 350 (671)
Q Consensus 300 TNvvQs~ia~~~L~~qL~~lgi~~~~~--------------------~~~~~~~~f~~lWadnGD~iS~qY 350 (671)
.|++|++ .+|-..+.++|+-.... -.+++....+.||.|.| |...|
T Consensus 15 ~Nii~~m---~~li~a~~~l~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~~~~i~~LW~D~~--iq~~~ 80 (121)
T d1tada1 15 GNTLQSI---LAIVRAMTTLNIQYGDSARQDDARKLMHMADTIEEGTMPKEMSDIIQRLWKDSG--IQACF 80 (121)
T ss_dssp HHHHHHH---HHHHHHHHHTTCCCSSTTHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHCHH--HHHHH
T ss_pred HHHHHHH---HHHHHHHHHcCCCCCCchHHHHHHHHHHhhccccCCCCCHHHHHHHHHHhCCHH--HHHHH
Confidence 4777764 45566678888753211 12345556677887776 44444
No 10
>d1ur1a_ c.1.8.3 (A:) Xylanase {Cellvibrio mixtus [TaxId: 39650]}
Probab=8.65 E-value=1.7e+02 Score=27.89 Aligned_cols=75 Identities=12% Similarity=0.188 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHhhhhcC-Cce---EEec-cccCC-----------ChhhHHHHHHHHHHHhCCCCcceeehhHHHHhhhc
Q psy8439 188 NMEAVSKHFKSQEPYYG-YQV---ILNL-IDQHG-----------DEGDIEKAYRTSIRILNSQRVQYEAFDFHKECRKM 251 (671)
Q Consensus 188 ~~~a~~kHF~~L~~~YG-~~~---~VNL-l~~kg-----------~E~~L~~ay~~~v~~l~~~~i~y~~fDfh~~ck~~ 251 (671)
-...++.|+..+..+|+ .+. +||= ++..+ .+.-+.++|+.+-+. .|.++++.=||+-+-.+
T Consensus 105 l~~~~~~~I~~v~~ry~g~i~~WDVvNE~~~~~~~~~~~~~~~~~G~~~i~~af~~Ar~~--dP~akL~~Ndyn~~~~~- 181 (350)
T d1ur1a_ 105 LQKKMEEHITTLAGRYKGKLAAWDVVNEAVGDDLKMRDSHWYKIMGDDFIYNAFTLANEV--DPKAHLMYNDYNIERTG- 181 (350)
T ss_dssp HHHHHHHHHHHHHHHTTTTCSEEEEEECCBCTTSSBCCCHHHHHHTTHHHHHHHHHHHHH--CTTSEEEEEESSTTSTT-
T ss_pred HHHHHHHHHHHHHHhcCCcceEEEEecccccCCCCcccchhhhhcCcHHHHHHHHHHHhh--CCCceEeeccccccccc-
Confidence 34678999999999995 554 4553 22211 122345666554443 45565555566544222
Q ss_pred chhhHHHHHHHHHh
Q psy8439 252 RWDRLQILIDRVAQ 265 (671)
Q Consensus 252 ~~~~l~~L~~~l~~ 265 (671)
+-+.+-.+++.+.+
T Consensus 182 k~~~~~~lv~~l~~ 195 (350)
T d1ur1a_ 182 KREATVEMIERLQK 195 (350)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHh
Confidence 22344445555543
Done!