RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8439
(671 letters)
>gnl|CDD|227637 COG5329, COG5329, Phosphoinositide polyphosphatase (Sac family)
[Signal transduction mechanisms].
Length = 570
Score = 344 bits (884), Expect = e-110
Identities = 156/478 (32%), Positives = 237/478 (49%), Gaps = 39/478 (8%)
Query: 7 FKERNMSPQQVTMNQQYVSMITKVLSTPYFYYSYTYDLTYNMQRLYNVQPDFLQTPLHER 66
+ + + S + K+LS FY+SY +D+T ++Q+ + + +R
Sbjct: 108 WDDELEEDEANYDKL---SELKKLLSNGTFYFSYDFDITNSLQKNLSEGLE----ASVDR 160
Query: 67 ADERFVWNKNILNQF---------NSSDIGGFCVPVIHGFVSINKCTLNGKSFLWTLVSR 117
AD F+WN +L +F F VI GF + G + TL+SR
Sbjct: 161 ADLIFMWNSFLLEEFINHRSKLSSLEKQFDNFLTTVIRGFAETVDIKVGGNTISLTLISR 220
Query: 118 RSCKRAGTRLFTRGVDAEGNVANFVETEQIIEFEGYQSSFVQIRGSIPLYWQQYPNLKLK 177
RS +RAGTR +RG+D +GNV+NFVETEQI+ Y SF Q+RGSIPL+W+Q L
Sbjct: 221 RSSERAGTRYLSRGIDDDGNVSNFVETEQIVTDSQYIFSFTQVRGSIPLFWEQSNLLYGP 280
Query: 178 PPPKIIQENNNMEAV----SKHFKSQEPYYGYQVILNLIDQHGDEGDIEKAYRTSIRILN 233
I+ + EA KHF YG ++NL+ G E + + Y + +
Sbjct: 281 K----IKVTRSSEAAQSAFDKHFDKLREKYGDVYVVNLLKTKGYEAPLLELYEKHLDLSK 336
Query: 234 SQRVQYEAFDFHKECRKMRWDRLQILIDRVAQTQDAFQ-TFLLLQKNKLISAQEGVFRTN 292
++ Y FDFHKE + +D ++ L+ + Q F + + K IS Q+GVFRTN
Sbjct: 337 KPKIHYTEFDFHKETSQDGFDDVKKLLYLIEQDLLEFGYFAYDINEGKSISEQDGVFRTN 396
Query: 293 CIDCLDRTNVVQSMLAKRSLCIILKKLGISEVGEIDNAFEYLFKQVWADNADIISIQYSG 352
C+DCLDRTNV+QS++++ L + + + F + +++WADN D IS Y+G
Sbjct: 397 CLDCLDRTNVIQSLISRVLLEQFRS---EGVISDGYSPFLQIHRELWADNGDAISRLYTG 453
Query: 353 TGALKTDFTRTGKRTKVGMLNDLYNTLARYYKNNFQDGFRQDAIDLFLGNYKVSVLEKTN 412
TGALK+ FTR G+R+ G LND + +RYY NNF DG RQDAIDL LG ++ +
Sbjct: 454 TGALKSSFTRRGRRSFAGALNDFIKSFSRYYINNFTDGQRQDAIDLLLGKFR----PQEA 509
Query: 413 GDSPLVVKRGWKFFMFPSLLVISMAMFFCNVIIPA--EYTTKSLLSLLFWGSMIFITF 468
+ ++ +F +I + + SLL +L ++
Sbjct: 510 FSYRPLRIT-----FLLLMITACTISWFSTIIFISSLLCSNPSLLLVLAVILIVLSKL 562
Score = 103 bits (258), Expect = 6e-23
Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 11/134 (8%)
Query: 522 KVWADNADIISIQYSGTGALKTDFTRTGKRTKAGMLNDLYNTLARYYKNNFQDGFRQDAI 581
++WADN D IS Y+GTGALK+ FTR G+R+ AG LND + +RYY NNF DG RQDAI
Sbjct: 438 ELWADNGDAISRLYTGTGALKSSFTRRGRRSFAGALNDFIKSFSRYYINNFTDGQRQDAI 497
Query: 582 DLFLGNYKVSVLEKTNGDSPLVVKRGWKFFMFPSLLVISMAMFFCNVIIPA--EYTTKSL 639
DL LG ++ + + ++ +F +I + + SL
Sbjct: 498 DLLLGKFR----PQEAFSYRPLRIT-----FLLLMITACTISWFSTIIFISSLLCSNPSL 548
Query: 640 LSLLFWGSMIFITF 653
L +L ++
Sbjct: 549 LLVLAVILIVLSKL 562
>gnl|CDD|217007 pfam02383, Syja_N, SacI homology domain. This Pfam family
represents a protein domain which shows homology to the
yeast protein SacI. The SacI homology domain is most
notably found at the amino terminal of the inositol
5'-phosphatase synaptojanin.
Length = 298
Score = 303 bits (779), Expect = 2e-98
Identities = 111/262 (42%), Positives = 159/262 (60%), Gaps = 11/262 (4%)
Query: 1 MLPCSAFKERNMSPQQVTMNQQYVSMITKVLSTPYFYYSYTYDLTYNMQRLYNVQPDFLQ 60
+P ++ + + S ++ + Y+ ++ K+LS+ FY+SY YDLT ++QR
Sbjct: 41 FIPLNSSEYDSESDKKEKDEEHYLKLLKKLLSSGSFYFSYDYDLTNSLQRRGLSSS---- 96
Query: 61 TPLHERADERFVWNKNILNQFNS--SDIGGFCVPVIHGFVSINKCTLNG--KSFLWTLVS 116
+PL +RAD+RFVWN +L SD+ + +P+I GFV ++NG K TL+S
Sbjct: 97 SPLWKRADDRFVWNSYLLKPLIDFRSDLSDWLLPLIQGFVEQRTISVNGEGKKVTLTLIS 156
Query: 117 RRSCKRAGTRLFTRGVDAEGNVANFVETEQIIEFE-GYQSSFVQIRGSIPLYWQQYPNLK 175
RRS KRAGTR RG+D +GNVANFVETEQI+ + G SFVQIRGS+PL+W+Q PNLK
Sbjct: 157 RRSRKRAGTRYNRRGIDDDGNVANFVETEQIVSDDSGRIFSFVQIRGSVPLFWEQDPNLK 216
Query: 176 LKPPPKII-QENNNMEAVSKHFKSQEPYYGYQVILNLIDQHGDEGDIEKAYRTSIRILN- 233
KP KI A KHF YG I+NL+D+ G E + +AY +I LN
Sbjct: 217 YKPKIKITRSSEATQPAFDKHFDDLIKRYGPIYIVNLLDKKGSEKKLSEAYEEAINYLNE 276
Query: 234 SQRVQYEAFDFHKECRKMRWDR 255
+++++Y FDFH EC+ M++D
Sbjct: 277 NKKIKYTWFDFHAECKGMKFDN 298
>gnl|CDD|240703 cd12257, RRM1_RBM26_like, RNA recognition motif 1 in vertebrate
RNA-binding protein 26 (RBM26) and similar proteins.
This subfamily corresponds to the RRM1 of RBM26, and the
RRM of RBM27. RBM26, also known as cutaneous T-cell
lymphoma (CTCL) tumor antigen se70-2, represents a
cutaneous lymphoma (CL)-associated antigen. It contains
two RNA recognition motifs (RRMs), also known as RBDs
(RNA binding domains) or RNPs (ribonucleoprotein
domains). The RRMs may play some functional roles in
RNA-binding or protein-protein interactions. RBM27
contains only one RRM; its biological function remains
unclear. .
Length = 72
Score = 29.4 bits (67), Expect = 1.0
Identities = 14/67 (20%), Positives = 32/67 (47%), Gaps = 15/67 (22%)
Query: 181 KIIQENNNMEAVSKHFKSQEPYYGYQVILNL-IDQHG--------DEGDIEKAYRTSIRI 231
I E NN+ +++HF +G I+N+ ++ + + +KAYR+ +
Sbjct: 8 NIPPELNNITKLNEHFS----KFG--TIVNIQVNYNPESALVQFSTSEEAKKAYRSPEAV 61
Query: 232 LNSQRVQ 238
N++ ++
Sbjct: 62 FNNRFIK 68
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 30.8 bits (70), Expect = 2.6
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 415 SPLVVKRGWKFFM---FP--SLLVISMAMFFCNVIIPAEYTTKSLLSLLFWGSMIFI 466
S L+++RG + LV+S+ MF N + Y +L++L F+G
Sbjct: 275 SDLLLRRGKSLVFARKTAIIAGLVLSLLMFATN-YVNIPYAALALVALGFFGLGAGA 330
Score = 30.8 bits (70), Expect = 2.6
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 600 SPLVVKRGWKFFM---FP--SLLVISMAMFFCNVIIPAEYTTKSLLSLLFWGSMIFI 651
S L+++RG + LV+S+ MF N + Y +L++L F+G
Sbjct: 275 SDLLLRRGKSLVFARKTAIIAGLVLSLLMFATN-YVNIPYAALALVALGFFGLGAGA 330
>gnl|CDD|147504 pfam05352, Phage_connector, Phage Connector (GP10). The
head-tail connector of bacteriophage 29 is composed of
12 36 kDa subunits with 12 fold symmetry. It is the
central component of a rotary motor that packages the
genomic dsDNA into pre-formed proheads. This motor
consists of the head-tail connector, surrounded by a
29-encoded, 174-base, RNA and a viral ATPase protein.
Length = 281
Score = 29.4 bits (66), Expect = 5.3
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 35 YFYYSYTYDLTYNM---QRLYN-VQPDFLQTPLHER 66
Y++Y Y L Y + + L + P FL+ LH+
Sbjct: 18 EHYFNYLYSLAYQLFEWEGLPPTIDPSFLEKSLHQF 53
>gnl|CDD|238573 cd01168, adenosine_kinase, Adenosine kinase (AK) catalyzes the
phosphorylation of ribofuranosyl-containing nucleoside
analogues at the 5'-hydroxyl using ATP or GTP as the
phosphate donor.The physiological function of AK is
associated with the regulation of extracellular
adenosine levels and the preservation of intracellular
adenylate pools. Adenosine kinase is involved in the
purine salvage pathway. .
Length = 312
Score = 29.1 bits (66), Expect = 6.6
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 259 LIDRVAQTQDAFQTFLLLQKNKLISAQEGVFRTNC 293
L+D +AQ DAF L L+K +I A
Sbjct: 11 LVDILAQVDDAFLEKLGLKKGDMILADMEEQEELL 45
>gnl|CDD|153331 cd07647, F-BAR_PSTPIP, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine
Phosphatase-Interacting Proteins. F-BAR domains are
dimerization modules that bind and bend membranes and
are found in proteins involved in membrane dynamics and
actin reorganization. Vetebrates contain two
Proline-Serine-Threonine Phosphatase-Interacting
Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are
mainly expressed in hematopoietic cells and are involved
in the regulation of cell adhesion and motility.
Mutations in PSTPIPs have been shown to cause
autoinflammatory disorders. PSTPIP1 contains an
N-terminal F-BAR domain, PEST motifs, and a C-terminal
SH3 domain, while PSTPIP2 contains only the N-terminal
F-BAR domain. F-BAR domains form banana-shaped dimers
with a positively-charged concave surface that binds to
negatively-charged lipid membranes. They can induce
membrane deformation in the form of long tubules.
Length = 239
Score = 29.0 bits (65), Expect = 6.9
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 222 EKAYRTSIRILNSQRVQYEAFDFHKEC---RKMRWDRLQIL 259
+ AY++SI L RV++E+ + C + M +R++ L
Sbjct: 173 DSAYKSSIGCLEDARVEWES-EHATACQVFQNMEEERIKFL 212
>gnl|CDD|177598 PHA03360, PHA03360, tegument protein; Provisional.
Length = 442
Score = 29.1 bits (65), Expect = 7.6
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 278 KNKLISAQEGVFRTNCIDCLDRTNVVQSMLAKRSLCIILKKLGI 321
+N L+SA + R N D DRTN + R L I+K L I
Sbjct: 246 ENNLLSA-SQLKRVNAADFWDRTNRYLRDIGSRVLTHIVKTLQI 288
>gnl|CDD|148587 pfam07062, Clc-like, Clc-like. This family contains a number of
Clc-like proteins that are approximately 250 residues
long.
Length = 212
Score = 28.6 bits (64), Expect = 8.6
Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 1/69 (1%)
Query: 422 GWKFFMFPSLLVISMAMFFCNVIIPAEYTTKSLLSLLFWGSMIFITFTVTLRDGPLFVDK 481
GW L +ISM ++ ++LF + + FV
Sbjct: 102 GWHKATL-ILNLISMIFASLSIASGICAPCSPSRAILFTIFLGLAALLAGVALIIFFVYA 160
Query: 482 PRLYNKWYI 490
R+ +++
Sbjct: 161 HRVDSRFVQ 169
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.139 0.425
Gapped
Lambda K H
0.267 0.0771 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 34,229,780
Number of extensions: 3396135
Number of successful extensions: 3828
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3814
Number of HSP's successfully gapped: 38
Length of query: 671
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 568
Effective length of database: 6,369,140
Effective search space: 3617671520
Effective search space used: 3617671520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (27.6 bits)