RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy8439
         (671 letters)



>3lwt_X Phosphoinositide phosphatase SAC1; SAC3/FIG4, lipid metabol
           endoplasmic reticulum, hydrolase, membrane,
           transmembrane; 1.96A {Saccharomyces cerevisiae}
          Length = 505

 Score =  359 bits (922), Expect = e-117
 Identities = 166/417 (39%), Positives = 239/417 (57%), Gaps = 26/417 (6%)

Query: 5   SAFKERNMSPQQVTMNQQYVSMITKVLSTPYFYYSYTYDLTYNMQRLYNVQPDFLQTPLH 64
            +      + +  +   +Y+ ++   L    FY+SYTYDLT ++QR   V P        
Sbjct: 94  HSIVSTKFNSRIDSEEAEYIKLLELHLKNSTFYFSYTYDLTNSLQRNEKVGPA----ASW 149

Query: 65  ERADERFVWNKNILNQF-----NSSDIGGFCVPVIHGFVSINKCTLNGKSFLWTLVSRRS 119
           + ADERF WN  +             I  F  PVI+G+       LN    +  L++RRS
Sbjct: 150 KTADERFFWNHYLTEDLRNFAHQDPRIDSFIQPVIYGYAKTVDAVLNATPIVLGLITRRS 209

Query: 120 CKRAGTRLFTRGVDAEGNVANFVETEQIIEFEG------YQSSFVQIRGSIPLYWQQYPN 173
             RAGTR F RGVD +GNV NF ETEQI+  E       +  SF+Q RGS+P+YW +  N
Sbjct: 210 IFRAGTRYFRRGVDKDGNVGNFNETEQILLAENPESEKIHVFSFLQTRGSVPIYWAEINN 269

Query: 174 LKLKPPPKIIQENNNMEAVSKHFKSQEPYYGYQVILNLIDQHGDEGDIEKAYRTSIRILN 233
           LK    P ++   N+++A  KHF  Q+  YG   ++NL++Q G E  +++ Y + +  LN
Sbjct: 270 LK--YKPNLVLGENSLDATKKHFDQQKELYGDNYLVNLVNQKGHELPVKEGYESVVHALN 327

Query: 234 SQRVQYEAFDFHKECRKMRWDRLQILIDRVAQTQDAFQTFLLLQKN------KLISAQEG 287
             ++ Y  FDFH ECRKM+W R+++LID + +   + + F     +      ++++ Q  
Sbjct: 328 DPKIHYVYFDFHHECRKMQWHRVKLLIDHLEKLGLSNEDFFHKVIDSNGNTVEIVNEQHS 387

Query: 288 VFRTNCIDCLDRTNVVQSMLAKRSLCIILKKLGISEVG---EIDNAFEYLFKQVWADNAD 344
           V RTNC+DCLDRTNVVQS+LA+  L    +   +   G   E +      ++ +WADNAD
Sbjct: 388 VVRTNCMDCLDRTNVVQSVLAQWVLQKEFESADVVATGSTWEDNAPLLTSYQNLWADNAD 447

Query: 345 IISIQYSGTGALKTDFTRTGKRTKVGMLNDLYNTLARYYKNNFQDGFRQDAIDLFLG 401
            +S+ YSGTGALKTDFTRTGKRT++G  ND  N+ +RYY+NN+ DG RQD+ DLFLG
Sbjct: 448 AVSVAYSGTGALKTDFTRTGKRTRLGAFNDFLNSASRYYQNNWTDGPRQDSYDLFLG 504



 Score = 99.2 bits (246), Expect = 4e-22
 Identities = 44/64 (68%), Positives = 53/64 (82%)

Query: 523 VWADNADIISIQYSGTGALKTDFTRTGKRTKAGMLNDLYNTLARYYKNNFQDGFRQDAID 582
           +WADNAD +S+ YSGTGALKTDFTRTGKRT+ G  ND  N+ +RYY+NN+ DG RQD+ D
Sbjct: 441 LWADNADAVSVAYSGTGALKTDFTRTGKRTRLGAFNDFLNSASRYYQNNWTDGPRQDSYD 500

Query: 583 LFLG 586
           LFLG
Sbjct: 501 LFLG 504


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 68.3 bits (166), Expect = 5e-12
 Identities = 102/666 (15%), Positives = 188/666 (28%), Gaps = 226/666 (33%)

Query: 5   SAFKERNMSPQQVTMNQQYVSMITKVLSTPYFYYSYTYDLTYNMQRLYNVQPDFLQTPLH 64
           S  K     P          SM+T++       Y    D      RLYN    F     +
Sbjct: 96  SPIKTEQRQP----------SMMTRM-------YIEQRD------RLYNDNQVF--AKYN 130

Query: 65  -ERADERFVWNKNILNQFNSSDIGGFCVPVIHGFVSINKCTLNGKSFLWTLVSRRSCKRA 123
             R        + +L    + ++      +I G +        GK+++  L    S K  
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNV------LIDGVLGS------GKTWV-ALDVCLSYKV- 176

Query: 124 GTRLFTRGVDAEG---NVANFVETEQIIEFEGYQSSFVQIRGSIPLYWQQYPNLKLKPPP 180
                   +       N+ N    E ++E    Q    QI  +    W    +       
Sbjct: 177 -QCKMDFKI----FWLNLKNCNSPETVLEM--LQKLLYQIDPN----WTSRSD----HSS 221

Query: 181 KIIQENNNMEAVSKHFKSQEPYYGYQVILNLIDQHGDEGDIEKAYRTSIRILNSQRVQYE 240
            I    ++++A  +     +PY    ++L          +++     + +          
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVL---L------NVQ-----NAKAW-------N 260

Query: 241 AFDFHKECRKMRWDRLQILIDRVAQTQDAFQTFLLLQKNKLISAQEGVFRTNCIDCLDRT 300
           AF+    C+        IL+     T+    T      + L +A       +        
Sbjct: 261 AFNLS--CK--------ILL----TTRFKQVT------DFLSAATTTHISLD-------- 292

Query: 301 NVVQSMLAKRSLCIILKKLGISEVGEIDNAFEYLFKQVWADNADIISIQYSGTGALKTDF 360
           +   ++       ++LK L            + L ++V   N   +SI          D 
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCR--------PQDLPREVLTTNPRRLSI----IAESIRDG 340

Query: 361 TRTGKRTKVGMLNDLYNTLARYYKNNFQDGFRQDAIDLFLGNYKVSVLEKTNGDSPLVVK 420
             T                   +K+   D      I+  L     +VLE      P   +
Sbjct: 341 LATWD----------------NWKHVNCDKLTT-IIESSL-----NVLE------PAEYR 372

Query: 421 RG-WKFFMFPSLLVISMAMFFCNVIIPAEYTTKSLLSLLFWGSMIFIT---FTVTLRDGP 476
           +   +  +FP            +  IP       LLSL+ W  +I          L    
Sbjct: 373 KMFDRLSVFPP-----------SAHIPTI-----LLSLI-WFDVIKSDVMVVVNKLHKYS 415

Query: 477 LFVDKPRLYNKWYI--VLCPFKMERFFSPEKISLWRVAH---LESSIYQPKVWADNADII 531
           L V+K    +   I  +    K++      + +L    H   ++   Y      D+ D+I
Sbjct: 416 L-VEKQPKESTISIPSIYLELKVKL---ENEYAL----HRSIVDH--YNIPKTFDSDDLI 465

Query: 532 SIQ-----YSGTG----------------ALKTDF---------TRTGKRTKAGMLNDLY 561
                   YS  G                 +  DF           T       +LN L 
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL- 524

Query: 562 NTLARYYKNNFQDG---FRQDAIDL--FLGNYKVSVLEKTNGDSPLVVKRGWKFFMFPSL 616
             L ++YK    D    + +    +  FL   + +++     D   +++      M    
Sbjct: 525 QQL-KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD---LLRIA---LMAEDE 577

Query: 617 LVISMA 622
            +   A
Sbjct: 578 AIFEEA 583



 Score = 47.5 bits (112), Expect = 1e-05
 Identities = 84/503 (16%), Positives = 139/503 (27%), Gaps = 158/503 (31%)

Query: 196 FKSQEPYYGYQVILNLIDQHGDEGDIEKAYRTSIRILNSQRVQYEAFDFHKEC-RKMRWD 254
           F++ E  Y Y+ IL+           E A+   +   + + VQ    D  K    K   D
Sbjct: 9   FETGEHQYQYKDILS---------VFEDAF---VDNFDCKDVQ----DMPKSILSKEEID 52

Query: 255 RLQILIDRVAQTQDAFQTFLLLQKNKLISAQEGVFRTN---------------------C 293
            + +  D V+ T   F T L  Q+  +    E V R N                      
Sbjct: 53  HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112

Query: 294 IDCLDRT-NVVQSMLAKRSLCIILKKLGISEVGEIDNAFEYLF--------KQVWA---- 340
           I+  DR  N  Q   AK ++  +   L + +        + +         K   A    
Sbjct: 113 IEQRDRLYNDNQV-FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171

Query: 341 DNADIIS-----IQYSGTGALKTDFTRTGKRTKVGMLNDLYNTLARYYKNNFQDGFRQDA 395
            +  +       I +       +        T + ML  L   +   + +      R D 
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSP------ETVLEMLQKLLYQIDPNWTS------RSDH 219

Query: 396 IDLFLGNYKVSVLEKTNGDSPLVVKRGWKFFMFPSLLVISMAMFFCNVIIPAEYTTKSLL 455
                 N K+ +         L+  + ++      LLV+       NV            
Sbjct: 220 SS----NIKLRIHSIQAELRRLLKSKPYE----NCLLVLL------NV------------ 253

Query: 456 SLLFWGSMIFITFT------VTLRDGPLFVDKPRLYNKWYIVLCPFKMERFFSPEKISLW 509
                 +  +  F       +T R   +  D        +I L    M      E  SL 
Sbjct: 254 ----QNAKAWNAFNLSCKILLTTRFKQV-TDFLSAATTTHISLDHHSMT-LTPDEVKSLL 307

Query: 510 -RVAHLESSIYQPKVWADNADIISIQYSGTGALKTDFTRTGKRTKAGMLNDLYNTLARYY 568
            +           +V   N   +SI          D   T                   +
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSI----IAESIRDGLATWD----------------NW 347

Query: 569 KNNFQDGFRQDAIDLFLGNYKVSVLEKTNGDSPLVVKRG-WKFFMFPSLLVISMAMFFCN 627
           K+   D      I+  L     +VLE      P   ++   +  +FP            +
Sbjct: 348 KHVNCDKLTT-IIESSL-----NVLE------PAEYRKMFDRLSVFPP-----------S 384

Query: 628 VIIPAEYTTKSLLSLLFWGSMIF 650
             IP       LLSL+ W  +I 
Sbjct: 385 AHIPTI-----LLSLI-WFDVIK 401


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 45.4 bits (107), Expect = 7e-05
 Identities = 53/272 (19%), Positives = 90/272 (33%), Gaps = 80/272 (29%)

Query: 320  GISEVG---EIDNAFEYLFKQVWADNAD----------IISIQYSGTGALKTDFTRTGKR 366
            G  E G   ++    +   + VW + AD          I+ I  +    L   F   G++
Sbjct: 1625 GSQEQGMGMDLYKTSKA-AQDVW-NRADNHFKDTYGFSILDIVINNPVNLTIHFG--GEK 1680

Query: 367  TKVGMLNDLYNTLARYYKNNFQDGFRQDAIDLFLGNYKVSVLEKTNGDSPLVVKRGWKFF 426
             K   + + Y+ +         DG  +             + ++ N  S     R  K  
Sbjct: 1681 GK--RIRENYSAMIF---ETIVDGKLKTE----------KIFKEINEHSTSYTFRSEKGL 1725

Query: 427  MF------PSLLVISMAMFFCNVI-----IPA----------EYTTKSLLSL---LFWGS 462
            +       P+L ++  A F    +     IPA          EY   +L SL   +   S
Sbjct: 1726 LSATQFTQPALTLMEKAAF--EDLKSKGLIPADATFAGHSLGEYA--ALASLADVMSIES 1781

Query: 463  MIFITFTVTLRDGPLF---VDKPRLYNKWY--IVLCPFKMERFFSPEKISLW--RVAHLE 515
            ++ +   V  R G      V +  L    Y  I + P ++   FS E +     RV    
Sbjct: 1782 LVEV---VFYR-GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRT 1837

Query: 516  SSIYQPKVWA-DNADIISIQY--SGT-GALKT 543
              + +       N +  + QY  +G   AL T
Sbjct: 1838 GWLVEI---VNYNVE--NQQYVAAGDLRALDT 1864



 Score = 42.3 bits (99), Expect = 5e-04
 Identities = 69/432 (15%), Positives = 123/432 (28%), Gaps = 145/432 (33%)

Query: 48  MQRLYNVQPDF-----------LQTPLHERADERFVWNKNILNQFNSSDIGGF-----CV 91
           ++ LY                 L   +    D   V+ + +       +I  +       
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL-------NILEWLENPSNT 225

Query: 92  P----VIHGFVSINKCTLNGKSFLWTLVS-RRSCKRAGT-----RLFTRGVDAEGN---V 138
           P    ++   +S   C L G   +  L     + K  G      R + +G          
Sbjct: 226 PDKDYLLSIPIS---CPLIG---VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT 279

Query: 139 ANFVETEQIIE-FEGYQSSFVQIRGSIPLYW------QQYPNLKLKPPPKIIQ---ENNN 188
           A  +      E F       + +     L++      + YPN  L  PP I++   ENN 
Sbjct: 280 AVAIAETDSWESFFVSVRKAITV-----LFFIGVRCYEAYPNTSL--PPSILEDSLENNE 332

Query: 189 -----MEAVSKHFKSQEPYYGYQVILNLIDQHGDEGDIEKAYRTSIRILNSQRVQY---- 239
                M ++S   + Q      Q  +N  + H   G      +  I ++N  +       
Sbjct: 333 GVPSPMLSISNLTQEQ-----VQDYVNKTNSHLPAGK-----QVEISLVNGAK-NLVVSG 381

Query: 240 -----EAFD--FHKECRKMRWDRLQILIDRVAQTQDAFQT-FLLLQKNKLISAQEGVFRT 291
                   +    K       D+ +I      + +  F   FL       +++    F +
Sbjct: 382 PPQSLYGLNLTLRKAKAPSGLDQSRIPFS---ERKLKFSNRFL------PVAS---PFHS 429

Query: 292 NCIDCL-DRTNVVQSMLAKRSLCIILKKLGI----SEVGE-----IDNAFEYLFKQV--- 338
                L   ++++   L K ++    K + I    +  G        +  E +   +   
Sbjct: 430 ---HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRL 486

Query: 339 ---W--ADNADIISI------QYSGTGALKTDFTR-TGKRT-KVGML----NDLYNTLAR 381
              W          I        SG G L       TG R    G L    +D Y     
Sbjct: 487 PVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDY----- 541

Query: 382 YYKNNFQDGFRQ 393
                   GF+Q
Sbjct: 542 --------GFKQ 545



 Score = 39.3 bits (91), Expect = 0.005
 Identities = 33/163 (20%), Positives = 51/163 (31%), Gaps = 78/163 (47%)

Query: 555  GMLNDLYNT--LAR--------YYKNNFQDGFRQDAID---------LFLG--------N 587
            GM  DLY T   A+        ++K+ +  GF    I           F G        N
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRADNHFKDTY--GFSILDIVINNPVNLTIHFGGEKGKRIREN 1687

Query: 588  YKVSVLEKTNGDSPLVVKRGWK-------FFMF--------------PSLLVISMAMFFC 626
            Y   + E T  D  L  ++ +K        + F              P+L ++  A F  
Sbjct: 1688 YSAMIFE-TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAF-- 1744

Query: 627  NVI-----IPA----------EYT----------TKSLLSLLF 644
              +     IPA          EY            +SL+ ++F
Sbjct: 1745 EDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVF 1787



 Score = 34.3 bits (78), Expect = 0.19
 Identities = 42/268 (15%), Positives = 77/268 (28%), Gaps = 97/268 (36%)

Query: 260 IDRVAQTQDAFQTFLLLQKNKLISAQEGVFRTNCIDCLDRTNVVQSMLAKRSLCIILKK- 318
           +  + +     Q   +L    L   +      N I  L        +L +    ++  K 
Sbjct: 68  VSSLVEPSKVGQFDQVL-NLCLTEFENCYLEGNDIHAL-----AAKLLQENDTTLVKTKE 121

Query: 319 -----------LGISEVGEIDNAFEYLFKQVWADNADIISIQYSGTGALKTDFTRTGKRT 367
                             + ++A   LF+ V   NA +++I + G G     F       
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSA---LFRAVGEGNAQLVAI-FGGQGNTDDYFEE----- 172

Query: 368 KVGMLNDLYNTLARYYKNNFQDGFRQDAIDLFLGNYKVSVLEKTNGDSPLVVKRG----- 422
               L DLY T    Y     D  +  A  L       S L +T  D+  V  +G     
Sbjct: 173 ----LRDLYQT----YHVLVGDLIKFSAETL-------SELIRTTLDAEKVFTQGLNILE 217

Query: 423 W---------KFFM------FPSLLVISMAMF--FCNV---------------------I 444
           W         K ++       P + VI +A +     +                     +
Sbjct: 218 WLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL 277

Query: 445 IPA------------EYTTKSLLSLLFW 460
           + A              + +  +++LF+
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFF 305



 Score = 31.2 bits (70), Expect = 1.5
 Identities = 55/333 (16%), Positives = 93/333 (27%), Gaps = 132/333 (39%)

Query: 384 KNNFQ-------DGFRQD-----AIDL---FLGNYKVSVLEKTNGDSPLVVKRGWKFFMF 428
           +  F        +GF  D       +L   FLG Y  S++E +                F
Sbjct: 34  QEQFNKILPEPTEGFAADDEPTTPAELVGKFLG-YVSSLVEPSKVGQ------------F 80

Query: 429 PSLLVISMAMFFCNVIIPAEYTTKSLLSLLFWGSMIFITFTVTL-RDGPLFVDKPRLYNK 487
             +L + +  F               L     G+ I       L ++    + K +   K
Sbjct: 81  DQVLNLCLTEF-----------ENCYLE----GNDIH-ALAAKLLQENDTTLVKTKELIK 124

Query: 488 WYIVLCPFKMERFFSPEKISLWRVAHLESSIYQPKVWADNADIISIQYSGTGALKTDFTR 547
            YI         F      +L+R                NA +++I + G G     F  
Sbjct: 125 NYITARIMAKRPFDKKSNSALFRAVG-----------EGNAQLVAI-FGGQGNTDDYFEE 172

Query: 548 TGKRTKAGMLNDLYNTLARYYKNNFQDGFRQDAIDLFLGNYKVSVLEKTNGDSPLVVKRG 607
                    L DLY T    Y     D  +  A  L       S L +T  D+  V  +G
Sbjct: 173 ---------LRDLYQT----YHVLVGDLIKFSAETL-------SELIRTTLDAEKVFTQG 212

Query: 608 -----W---------KFFM------FPSLLVISMAMF--FCNV----------------- 628
                W         K ++       P + VI +A +     +                 
Sbjct: 213 LNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG 272

Query: 629 ----IIPA------------EYTTKSLLSLLFW 645
               ++ A              + +  +++LF+
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFF 305


>3evy_A Putative type I restriction enzyme R protein; structural genomics,
           unknown function, PSI-2, protein structure initiative;
           1.95A {Bacteroides fragilis nctc 9343}
          Length = 239

 Score = 31.9 bits (72), Expect = 0.61
 Identities = 16/149 (10%), Positives = 38/149 (25%), Gaps = 18/149 (12%)

Query: 141 FVETEQII---EFEGYQSSFVQIRGSIPLYWQQYPNLKLKPPPKIIQENNNMEAVSKHFK 197
           F   +  I    F  YQS ++ +                           +++   +   
Sbjct: 69  FDAEDLTIEEQRFADYQSKYLDMSNEF---------AITSEKEDAESILQDIDFELELVH 119

Query: 198 SQEPYYGYQVILNLIDQHGDEGDIEKAYRTSIR--ILNSQRVQYEAFDFHKECRKMRWDR 255
                     IL L+     E       R ++   + ++  ++ +        +      
Sbjct: 120 RDI--INVMYILALLQDLKPESSSYPKDRKAVLDTMDSNPELRSKIALIDNFIKLHIDG- 176

Query: 256 LQILIDRVAQTQDAFQTFLLLQKNKLISA 284
            +   D  A  +     ++  QK   I  
Sbjct: 177 -RQSNDLPADMESDLDKYIATQKAIAIEQ 204


>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha
           structural genomics, joint center for structural
           genomics; HET: MSE; 2.37A {Clostridium acetobutylicum
           atcc 824}
          Length = 354

 Score = 29.4 bits (66), Expect = 4.1
 Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 8/84 (9%)

Query: 179 PPKIIQENNNMEAVSKHFKSQEPYYGYQVILNLIDQHGDEGDIEKAYRTSIRILNSQRVQ 238
           P  +   NN +  + +  K       ++ +  L      EG  E    T  + + S  ++
Sbjct: 12  PLILEVGNNKIYNIGQIIKK----GNFKRVS-LY---FGEGIYELFGETIEKSIKSSNIE 63

Query: 239 YEAFDFHKECRKMRWDRLQILIDR 262
            EA +  K             I  
Sbjct: 64  IEAVETVKNIDFDEIGTNAFKIPA 87


>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A
          {Campylobacter jejuni subsp}
          Length = 418

 Score = 29.2 bits (66), Expect = 4.9
 Identities = 8/57 (14%), Positives = 17/57 (29%), Gaps = 1/57 (1%)

Query: 1  MLPCSAFKERNMSPQQVTMNQQYVSMITKVLSTPYFYYSYTYDLTYNMQRLYNVQPD 57
          M   +  ++               +M  + + TP +       L  N + L +V   
Sbjct: 12 MASMTGGQQMGRDLYDDDDKDHPFTMFYEKIQTPAYILEEDK-LRKNCELLASVGEK 67


>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC,
           transctiptional regulator, SUG binding protein,
           structural genomics, PSI-2; 2.05A {Burkholderia
           phymatum}
          Length = 290

 Score = 28.3 bits (64), Expect = 7.5
 Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 3/35 (8%)

Query: 203 YGYQVILNLIDQHGDEGDIEKAYRTSIRILNSQRV 237
               V+  +    G+    E+A   ++R L  +  
Sbjct: 37  VHRHVV--VATGCGESTPREQA-LEAVRFLIGRDC 68


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.324    0.139    0.425 

Gapped
Lambda     K      H
   0.267   0.0512    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,191,241
Number of extensions: 610157
Number of successful extensions: 1611
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1595
Number of HSP's successfully gapped: 20
Length of query: 671
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 571
Effective length of database: 3,909,693
Effective search space: 2232434703
Effective search space used: 2232434703
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (27.8 bits)