RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8439
         (671 letters)



>d1y6da_ a.24.10.5 (A:) Phosphorelay protein luxU {Vibrio harveyi
           [TaxId: 669]}
          Length = 114

 Score = 27.8 bits (61), Expect = 1.8
 Identities = 8/76 (10%), Positives = 26/76 (34%), Gaps = 10/76 (13%)

Query: 209 LNLIDQHGDEGDIEKAYRTSIRILNS------QRVQYEAFDFHKECRKMRW----DRLQI 258
           +  + +      +      S  + +S       R+   A    K+ +  +          
Sbjct: 38  IGTLTELQGSEQLLYLKEISHALKSSAASFGADRLCERAIAIDKKAKANQLQEQGMETSE 97

Query: 259 LIDRVAQTQDAFQTFL 274
           ++  +  T+DA++++ 
Sbjct: 98  MLALLHITRDAYRSWT 113


>d2d3ia2 c.94.1.2 (A:335-686) Ovotransferrin {Chicken (Gallus
           gallus) [TaxId: 9031]}
          Length = 352

 Score = 27.3 bits (60), Expect = 7.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)

Query: 198 SQEPYYGYQVILNLIDQHGD 217
           S E Y+GY   L  + + GD
Sbjct: 183 SHEKYFGYTGALRCLVEKGD 202


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.139    0.425 

Gapped
Lambda     K      H
   0.267   0.0531    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,526,988
Number of extensions: 120517
Number of successful extensions: 326
Number of sequences better than 10.0: 1
Number of HSP's gapped: 326
Number of HSP's successfully gapped: 7
Length of query: 671
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 580
Effective length of database: 1,158,166
Effective search space: 671736280
Effective search space used: 671736280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.8 bits)