BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8441
         (234 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2OCD|A Chain A, Crystal Structure Of L-Asparaginase I From Vibrio Cholerae
           O1 Biovar Eltor Str. N16961
 pdb|2OCD|B Chain B, Crystal Structure Of L-Asparaginase I From Vibrio Cholerae
           O1 Biovar Eltor Str. N16961
 pdb|2OCD|C Chain C, Crystal Structure Of L-Asparaginase I From Vibrio Cholerae
           O1 Biovar Eltor Str. N16961
 pdb|2OCD|D Chain D, Crystal Structure Of L-Asparaginase I From Vibrio Cholerae
           O1 Biovar Eltor Str. N16961
          Length = 337

 Score = 28.5 bits (62), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 12/92 (13%)

Query: 150 KQLQSAFDSRPPHVPLLTVSNHDSCFDD----PGLWVLLKNRQLCNNSKMRWSMAAHDI- 204
           KQL S  +   P  PL T+  +D   D     P  W L+ +    N  K    +  H   
Sbjct: 33  KQLASXPEFHRPEXPLFTIHEYDPLXDSSDXTPADWQLIADDIAANYDKYDGFVILHGTD 92

Query: 205 --CFTQTSHSYFFM-LGKCVPVVRGAGIYQIP 233
              +T ++ S+ F  LGK V +V G+   QIP
Sbjct: 93  TXAYTASALSFXFENLGKPV-IVTGS---QIP 120


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.136    0.452 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,229,365
Number of Sequences: 62578
Number of extensions: 273487
Number of successful extensions: 644
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 644
Number of HSP's gapped (non-prelim): 1
length of query: 234
length of database: 14,973,337
effective HSP length: 96
effective length of query: 138
effective length of database: 8,965,849
effective search space: 1237287162
effective search space used: 1237287162
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.9 bits)