Query psy8441
Match_columns 234
No_of_seqs 264 out of 480
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 18:57:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8441.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8441hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iuq_A Glycerol-3-phosphate ac 98.8 2.4E-09 8.3E-14 99.9 3.0 94 126-223 94-190 (367)
2 1sxj_D Activator 1 41 kDa subu 15.5 64 0.0022 27.1 1.8 33 149-181 150-182 (353)
3 1chd_A CHEB methylesterase; ch 15.4 1E+02 0.0035 26.0 3.1 35 148-182 21-55 (203)
4 4iao_C Regulatory protein SIR4 15.1 82 0.0028 26.1 2.3 45 132-176 78-128 (159)
5 1sxj_E Activator 1 40 kDa subu 12.3 1.2E+02 0.0041 25.5 2.7 34 148-181 150-183 (354)
6 2ot8_C HnRNP M, heterogeneous 11.7 68 0.0023 19.8 0.6 12 221-232 12-23 (30)
7 2chg_A Replication factor C sm 11.3 1.1E+02 0.0036 23.1 1.8 32 150-181 120-151 (226)
8 3t15_A Ribulose bisphosphate c 10.3 2.3E+02 0.008 23.9 3.8 22 160-181 153-174 (293)
9 3iwh_A Rhodanese-like domain p 9.4 1.4E+02 0.0048 21.6 1.8 18 154-171 48-65 (103)
10 1ozj_A SMAD 3; MAD homology do 8.9 1.1E+02 0.0038 24.9 1.2 24 147-170 46-69 (144)
No 1
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=98.76 E-value=2.4e-09 Score=99.94 Aligned_cols=94 Identities=14% Similarity=0.105 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHhhhhceeEEcchhhHHHHhhcCCCCCCeEEeecCCCCCChhhhhhhcccccccCCCccchhhhhHHHh
Q psy8441 126 TVAAVGIVSKWFLTWFNKVHCHNAKQLQSAFDSRPPHVPLLTVSNHDSCFDDPGLWVLLKNRQLCNNSKMRWSMAAHDIC 205 (234)
Q Consensus 126 ~~~~V~~isK~~l~~lnrv~V~G~E~L~~al~nrP~~gpLITVSNH~S~lDdPlIw~~Lp~r~~~~~~~iRWt~~AKdic 205 (234)
+|.++..+.+.++... +.+|.|.|++.+..|+.|+++++|.+|||+|++|+++|..+|+...--=.+++ ++.||+++
T Consensus 94 ~y~~~~~~ir~li~~~-~s~V~G~e~~~~~~E~l~~~~~vIfisNHQS~~D~~vi~~~l~~~~~~l~~~~--~fVAk~eL 170 (367)
T 1iuq_A 94 YYIFGQNYIRPLIDFG-NSFVGNLSLFKDIEEKLQQGHNVVLISNHQTEADPAIISLLLEKTNPYIAENT--IFVAGDRV 170 (367)
T ss_dssp HHHHHHHHHGGGBCGG-GCEEECHHHHHHHHHHHHTTCEEEEEECCCCTTHHHHHHHHHTTTCHHHHHHC--EEEECTHH
T ss_pred HHHHHHHHHHHHHhhc-CCEeecchhhhhHHhhccCCCcEEEEECCccchhHHHHHHHHhhcccccccce--EEEeehhh
Confidence 4556666677777644 77899999999999999999999999999999999999999974000000012 36999999
Q ss_pred hccchHHHHhhcCc---EEee
Q psy8441 206 FTQTSHSYFFMLGK---CVPV 223 (234)
Q Consensus 206 Ftn~l~s~fF~~g~---~iPV 223 (234)
+++|+...| +.+. ||-.
T Consensus 171 ~~~Pl~~Pf-s~g~~l~cI~~ 190 (367)
T 1iuq_A 171 LADPLCKPF-SIGRNLICVYS 190 (367)
T ss_dssp HHCTTTHHH-HHTSEEEECCC
T ss_pred hcCccccch-hhhhheeeEEe
Confidence 999998775 6666 5543
No 2
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=15.50 E-value=64 Score=27.08 Aligned_cols=33 Identities=12% Similarity=0.068 Sum_probs=26.7
Q ss_pred hhhHHHHhhcCCCCCCeEEeecCCCCCChhhhh
Q psy8441 149 AKQLQSAFDSRPPHVPLLTVSNHDSCFDDPGLW 181 (234)
Q Consensus 149 ~E~L~~al~nrP~~gpLITVSNH~S~lDdPlIw 181 (234)
.+.|++++++.+.+..+|+++|+...++|++.-
T Consensus 150 ~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~s 182 (353)
T 1sxj_D 150 QSALRRTMETYSGVTRFCLICNYVTRIIDPLAS 182 (353)
T ss_dssp HHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH
T ss_pred HHHHHHHHHhcCCCceEEEEeCchhhCcchhhc
Confidence 356778888877778899999999988887654
No 3
>1chd_A CHEB methylesterase; chemotaxis protein, serine hydrolase, carboxyl methylesteras; 1.75A {Salmonella typhimurium} SCOP: c.40.1.1
Probab=15.40 E-value=1e+02 Score=25.97 Aligned_cols=35 Identities=9% Similarity=0.106 Sum_probs=26.7
Q ss_pred chhhHHHHhhcCCCCCCeEEeecCCCCCChhhhhh
Q psy8441 148 NAKQLQSAFDSRPPHVPLLTVSNHDSCFDDPGLWV 182 (234)
Q Consensus 148 G~E~L~~al~nrP~~gpLITVSNH~S~lDdPlIw~ 182 (234)
|.|.|.+.|.+.|.+-|.|++.-|++---...+.-
T Consensus 21 G~~AL~~~l~~LP~~~~~ivivQHm~~~f~~~la~ 55 (203)
T 1chd_A 21 GTEAIRHVLQPLPLSSPAVIITQHMPPGFTRSFAE 55 (203)
T ss_dssp HHHHHHHHHTTCCTTSCEEEEEECCCTTHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCeEEEEECCCCchHHHHHH
Confidence 67889999999999876799999987654444443
No 4
>4iao_C Regulatory protein SIR4; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=15.12 E-value=82 Score=26.13 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=33.1
Q ss_pred HHHHHHhhhhceeEEcchhhHHHHhhc-CCC-----CCCeEEeecCCCCCC
Q psy8441 132 IVSKWFLTWFNKVHCHNAKQLQSAFDS-RPP-----HVPLLTVSNHDSCFD 176 (234)
Q Consensus 132 ~isK~~l~~lnrv~V~G~E~L~~al~n-rP~-----~gpLITVSNH~S~lD 176 (234)
.+++=+++.+..-+.++++.|.++++. +|. ..|.+.|+|-+|..+
T Consensus 78 ~Lt~~v~~kladkk~y~K~~i~~LIe~GI~~H~Pl~sdp~VSvTNNICSv~ 128 (159)
T 4iao_C 78 ELTKNILWRIADKTTYDKETITDLIEQGIPKHSYLSGNPLTSVTNDICSVE 128 (159)
T ss_dssp HHHHHHHHHHTTCSSCCHHHHHHHHHTTSCCCCCTTTCTTCBTTTTSSCTT
T ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHhcccccCcccCCCcccccccccccc
Confidence 344556666788889999999999985 343 356788888877765
No 5
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=12.33 E-value=1.2e+02 Score=25.53 Aligned_cols=34 Identities=15% Similarity=0.129 Sum_probs=27.1
Q ss_pred chhhHHHHhhcCCCCCCeEEeecCCCCCChhhhh
Q psy8441 148 NAKQLQSAFDSRPPHVPLLTVSNHDSCFDDPGLW 181 (234)
Q Consensus 148 G~E~L~~al~nrP~~gpLITVSNH~S~lDdPlIw 181 (234)
..+.|++.+++.+++..+|.++|..+.++|++.-
T Consensus 150 ~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~s 183 (354)
T 1sxj_E 150 AQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKS 183 (354)
T ss_dssp HHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHT
T ss_pred HHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHh
Confidence 4567888888877788899999998888877543
No 6
>2ot8_C HnRNP M, heterogeneous nuclear ribonucleoprotein M; heat repeat, nuclear import complex, karyopherin, transport protein; 3.10A {Homo sapiens}
Probab=11.66 E-value=68 Score=19.78 Aligned_cols=12 Identities=17% Similarity=0.357 Sum_probs=9.3
Q ss_pred EeeecCCCcCCC
Q psy8441 221 VPVVRGAGIYQI 232 (234)
Q Consensus 221 iPV~RG~GVyQ~ 232 (234)
=|++||+|-|.+
T Consensus 12 k~~Krggnrfep 23 (30)
T 2ot8_C 12 KNIKRGGNRFEP 23 (30)
T ss_pred cccccCCccccc
Confidence 478899888765
No 7
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=11.28 E-value=1.1e+02 Score=23.06 Aligned_cols=32 Identities=13% Similarity=0.049 Sum_probs=23.2
Q ss_pred hhHHHHhhcCCCCCCeEEeecCCCCCChhhhh
Q psy8441 150 KQLQSAFDSRPPHVPLLTVSNHDSCFDDPGLW 181 (234)
Q Consensus 150 E~L~~al~nrP~~gpLITVSNH~S~lDdPlIw 181 (234)
+.|.+++++.+.+..+|.++|....+++.+.-
T Consensus 120 ~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~ 151 (226)
T 2chg_A 120 AALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (226)
T ss_dssp HHHHHHHHHTTTTEEEEEEESCGGGSCHHHHT
T ss_pred HHHHHHHHhcCCCCeEEEEeCChhhcCHHHHH
Confidence 45666677766777889999988777776543
No 8
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=10.29 E-value=2.3e+02 Score=23.86 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=16.5
Q ss_pred CCCCCeEEeecCCCCCChhhhh
Q psy8441 160 PPHVPLLTVSNHDSCFDDPGLW 181 (234)
Q Consensus 160 P~~gpLITVSNH~S~lDdPlIw 181 (234)
..+..+|..+|+.+.+|++++-
T Consensus 153 ~~~v~vI~ttN~~~~ld~al~R 174 (293)
T 3t15_A 153 NARVPIIVTGNDFSTLYAPLIR 174 (293)
T ss_dssp CCCCCEEEECSSCCC--CHHHH
T ss_pred CCCcEEEEecCCcccCCHHHhC
Confidence 3467899999999999999873
No 9
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=9.43 E-value=1.4e+02 Score=21.64 Aligned_cols=18 Identities=11% Similarity=-0.001 Sum_probs=13.5
Q ss_pred HHhhcCCCCCCeEEeecC
Q psy8441 154 SAFDSRPPHVPLLTVSNH 171 (234)
Q Consensus 154 ~al~nrP~~gpLITVSNH 171 (234)
+.+++.|++.++|++|++
T Consensus 48 ~~~~~l~~~~~ivv~C~~ 65 (103)
T 3iwh_A 48 DNLNSFNKNEIYYIVCAG 65 (103)
T ss_dssp GCGGGCCTTSEEEEECSS
T ss_pred hhhhhhcCCCeEEEECCC
Confidence 344556889999999865
No 10
>1ozj_A SMAD 3; MAD homology domain 1, DNA recognition, TGF-beta signaling, zinc-binding module, transcription/DNA complex; 2.40A {Homo sapiens} SCOP: d.164.1.1 PDB: 1mhd_A*
Probab=8.92 E-value=1.1e+02 Score=24.92 Aligned_cols=24 Identities=13% Similarity=0.252 Sum_probs=21.1
Q ss_pred cchhhHHHHhhcCCCCCCeEEeec
Q psy8441 147 HNAKQLQSAFDSRPPHVPLLTVSN 170 (234)
Q Consensus 147 ~G~E~L~~al~nrP~~gpLITVSN 170 (234)
..+|.|++||+++-...+.|++.+
T Consensus 46 ~~Le~L~~AV~s~g~~t~CV~ipr 69 (144)
T 1ozj_A 46 GQLDELEKAITTQNVNTKCITIPR 69 (144)
T ss_dssp TCHHHHHHHHHHCCTTSCCCEEEC
T ss_pred ccHHHHHHHHhCCCCCCCeEEccc
Confidence 689999999999866789999987
Done!