RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy8441
         (234 letters)



>gnl|CDD|216567 pfam01553, Acyltransferase, Acyltransferase.  This family contains
           acyltransferases involved in phospholipid biosynthesis
           and other proteins of unknown function. This family also
           includes tafazzin, the Barth syndrome gene.
          Length = 131

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 13/84 (15%)

Query: 143 KVHCHNAKQLQSAFDSRPPHVPLLTVSNHDSCFDDPGLWVLLKNRQLCNNSKMRWSMAAH 202
           +V  H  + L       P   P + V+NH S  D   L +LL  R      +    +A  
Sbjct: 1   RVRVHGLENL-------PRGGPAIVVANHQSYLDPLLLSLLLPKRG-----RPLVFVAKD 48

Query: 203 DICFTQTSHSYFFMLGKCVPVVRG 226
           ++        +   L  C+ + R 
Sbjct: 49  ELLNLPL-LGWLMRLLGCIFIDRK 71


>gnl|CDD|214724 smart00563, PlsC, Phosphate acyltransferases.  Function in
           phospholipid biosynthesis and have either
           glycerolphosphate, 1-acylglycerolphosphate, or
           2-acylglycerolphosphoethanolamine acyltransferase
           activities. Tafazzin, the product of the gene mutated in
           patients with Barth syndrome, is a member of this
           family.
          Length = 118

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 15/64 (23%), Positives = 20/64 (31%), Gaps = 6/64 (9%)

Query: 165 LLTVSNHDSCFDDPGLWVLLKNRQLCNNSKMRWSMAAHDICFTQTSHSYFFMLGKCVPVV 224
            L V+NH S  D   L  LL  +        R    A    F      +   L   + + 
Sbjct: 1   ALVVANHQSFLDPLVLSALLPRKLG------RVRFVAKKELFYVPLLGWLLRLLGAIFID 54

Query: 225 RGAG 228
           R  G
Sbjct: 55  RSNG 58


>gnl|CDD|153251 cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases
           (LPLATs) of Glycerophospholipid Biosynthesis:
           AGPAT-like.  Lysophospholipid acyltransferase (LPLAT)
           superfamily member: acyltransferases of de novo and
           remodeling pathways of glycerophospholipid biosynthesis
           which catalyze the incorporation of an acyl group from
           either acylCoAs or acyl-acyl carrier proteins (acylACPs)
           into acceptors such as glycerol 3-phosphate,
           dihydroxyacetone phosphate or lyso-phosphatidic acid.
           Included in this subgroup are such LPLATs as
           1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
           PlsC), Tafazzin (product of Barth syndrome gene), and
           similar proteins.
          Length = 184

 Score = 36.5 bits (85), Expect = 0.005
 Identities = 20/95 (21%), Positives = 30/95 (31%), Gaps = 20/95 (21%)

Query: 136 WFLTWFNKVHCHNAKQLQSAFDSRPPHVPLLTVSNHDSCFDDPGLWVLLKNRQLCNNSKM 195
                  +V     + L       PP  P++ V+NH S  D   L   L          +
Sbjct: 4   LLRLLGVRVRVEGLENL-------PPKGPVIIVANHQSYLDPLVLGAALPRP-------I 49

Query: 196 RWSMAAH--DICFTQTSHSYFFMLGKCVPVVRGAG 228
           R+        I F      +   L   +P+ RG G
Sbjct: 50  RFVAKKELFKIPFL----GWLLRLLGAIPIDRGNG 80


>gnl|CDD|216562 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40.  This
           family includes a range of zinc metallopeptidases
           belonging to several families in the peptidase
           classification. Family M20 are Glutamate
           carboxypeptidases. Peptidase family M25 contains X-His
           dipeptidases.
          Length = 310

 Score = 30.6 bits (69), Expect = 0.62
 Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 2/46 (4%)

Query: 175 FDDPGLWVLLKN--RQLCNNSKMRWSMAAHDICFTQTSHSYFFMLG 218
            +DP L   L+   ++L    +   S    D  F         MLG
Sbjct: 231 VNDPALVAALEEAAKELGLGPEPEPSGGGEDAAFFAEVGLGIPMLG 276


>gnl|CDD|224702 COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha
           subunit [Lipid metabolism].
          Length = 220

 Score = 29.1 bits (66), Expect = 1.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 166 LTVSNHDSCFDDPGLWVLLKNRQL 189
           LTV ++++ F D GL  L+ N Q+
Sbjct: 47  LTVISNNAGFPDLGLGKLIGNGQV 70


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.325    0.136    0.452 

Gapped
Lambda     K      H
   0.267   0.0707    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,495,709
Number of extensions: 995140
Number of successful extensions: 921
Number of sequences better than 10.0: 1
Number of HSP's gapped: 919
Number of HSP's successfully gapped: 11
Length of query: 234
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 140
Effective length of database: 6,768,326
Effective search space: 947565640
Effective search space used: 947565640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (25.8 bits)