RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8441
         (234 letters)



>d1iuqa_ c.112.1.1 (A:) Glycerol-3-phosphate (1)-acyltransferase
           {Cushaw squash (Cucurbita moschata) [TaxId: 3662]}
          Length = 367

 Score = 50.8 bits (121), Expect = 4e-08
 Identities = 13/93 (13%), Positives = 29/93 (31%), Gaps = 2/93 (2%)

Query: 141 FNKVHCHNAKQLQSAFDSRPPHVPLLTVSNHDSCFDDPGLWVLLKNRQLCNNSKMRWSMA 200
           F      N    +   +       ++ +SNH +  D   + +LL+           + +A
Sbjct: 108 FGNSFVGNLSLFKDIEEKLQQGHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIF-VA 166

Query: 201 AHDICFTQTSHSYFFMLGKCVPVVRGAGIYQIP 233
              +         F +    + V     ++ IP
Sbjct: 167 GDRV-LADPLCKPFSIGRNLICVYSKKHMFDIP 198


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.136    0.452 

Gapped
Lambda     K      H
   0.267   0.0519    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 915,559
Number of extensions: 40204
Number of successful extensions: 125
Number of sequences better than 10.0: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 2
Length of query: 234
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 152
Effective length of database: 1,281,736
Effective search space: 194823872
Effective search space used: 194823872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.9 bits)