Query psy8442
Match_columns 130
No_of_seqs 106 out of 263
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 18:58:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8442.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8442hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2847|consensus 100.0 2.9E-33 6.2E-38 226.7 9.0 110 11-120 154-267 (286)
2 PTZ00261 acyltransferase; Prov 99.1 4E-10 8.7E-15 95.6 9.4 94 10-109 218-317 (355)
3 cd07987 LPLAT_MGAT-like Lysoph 99.1 8.9E-11 1.9E-15 90.5 3.4 94 10-111 92-208 (212)
4 PRK15018 1-acyl-sn-glycerol-3- 99.0 1.4E-09 3E-14 87.4 8.2 90 11-113 143-236 (245)
5 PLN02901 1-acyl-sn-glycerol-3- 98.9 2.3E-09 4.9E-14 83.7 6.9 82 9-109 124-209 (214)
6 PLN02783 diacylglycerol O-acyl 98.8 1.1E-08 2.5E-13 85.0 6.8 97 11-117 174-305 (315)
7 cd07986 LPLAT_ACT14924-like Ly 98.6 8.8E-09 1.9E-13 79.9 1.0 87 9-106 100-209 (210)
8 cd07992 LPLAT_AAK14816-like Ly 98.5 1.7E-07 3.8E-12 71.9 5.5 82 8-106 111-202 (203)
9 cd07991 LPLAT_LPCAT1-like Lyso 98.4 5.7E-07 1.2E-11 69.7 6.4 88 8-109 98-197 (211)
10 cd07985 LPLAT_GPAT Lysophospho 98.4 1.2E-06 2.6E-11 70.9 7.1 92 11-109 119-231 (235)
11 cd07983 LPLAT_DUF374-like Lyso 98.3 1.3E-06 2.8E-11 65.9 6.2 83 10-107 100-188 (189)
12 cd07989 LPLAT_AGPAT-like Lysop 98.3 1.5E-06 3.3E-11 64.4 5.9 81 9-102 99-183 (184)
13 PRK08633 2-acyl-glycerophospho 98.3 1.8E-06 3.8E-11 79.2 6.6 66 9-78 513-589 (1146)
14 cd06551 LPLAT Lysophospholipid 98.2 2.1E-06 4.6E-11 63.6 4.9 64 7-80 101-168 (187)
15 PRK06814 acylglycerophosphoeth 98.2 3.8E-06 8.2E-11 77.8 7.2 89 11-109 527-622 (1140)
16 PRK08043 bifunctional acyl-[ac 98.1 7.1E-06 1.5E-10 73.1 7.1 66 9-78 99-171 (718)
17 KOG2848|consensus 98.1 1.5E-05 3.3E-10 65.6 7.7 67 9-80 165-235 (276)
18 COG0204 PlsC 1-acyl-sn-glycero 98.0 2.8E-05 6.1E-10 59.8 6.8 66 9-82 140-209 (255)
19 PRK03355 glycerol-3-phosphate 97.9 2.1E-05 4.6E-10 72.8 5.8 96 9-109 348-482 (783)
20 TIGR03703 plsB glycerol-3-phos 97.8 2.6E-05 5.7E-10 72.3 5.8 70 9-83 373-475 (799)
21 cd07988 LPLAT_ABO13168-like Ly 97.8 3.4E-05 7.3E-10 58.1 4.3 48 11-80 99-150 (163)
22 PRK04974 glycerol-3-phosphate 97.5 0.00015 3.4E-09 67.4 5.2 72 9-83 383-485 (818)
23 PLN02833 glycerol acyltransfer 97.2 0.00025 5.5E-09 60.7 3.4 88 8-110 238-337 (376)
24 cd07993 LPLAT_DHAPAT-like Lyso 97.1 7E-05 1.5E-09 57.8 -1.4 67 9-81 103-204 (205)
25 PLN02177 glycerol-3-phosphate 97.0 0.0013 2.8E-08 58.2 5.5 89 9-108 367-465 (497)
26 cd07984 LPLAT_LABLAT-like Lyso 96.9 0.0031 6.7E-08 47.0 6.2 57 8-79 91-158 (192)
27 PTZ00374 dihydroxyacetone phos 96.6 0.0027 5.9E-08 60.6 4.4 70 9-83 711-816 (1108)
28 PRK11915 glycerol-3-phosphate 96.0 0.013 2.7E-07 53.5 5.2 74 9-85 196-301 (621)
29 PF03982 DAGAT: Diacylglycerol 95.9 0.014 3E-07 48.6 4.8 70 30-109 173-278 (297)
30 smart00563 PlsC Phosphate acyl 95.1 0.013 2.8E-07 39.5 1.7 38 9-49 77-118 (118)
31 PF01553 Acyltransferase: Acyl 94.9 0.0049 1.1E-07 42.9 -0.8 36 9-47 93-132 (132)
32 TIGR00530 AGP_acyltrn 1-acyl-s 94.2 0.024 5.2E-07 39.3 1.4 37 8-47 90-130 (130)
33 PLN02588 glycerol-3-phosphate 92.4 0.27 5.8E-06 44.3 5.3 89 10-108 395-497 (525)
34 KOG0831|consensus 92.2 0.26 5.6E-06 42.1 4.7 73 30-112 211-318 (334)
35 PLN02499 glycerol-3-phosphate 91.5 0.33 7.1E-06 43.5 4.8 88 10-108 355-452 (498)
36 PRK14014 putative acyltransfer 88.1 2 4.4E-05 35.5 6.7 107 11-122 178-299 (301)
37 PRK08419 lipid A biosynthesis 88.1 1.2 2.6E-05 36.1 5.2 35 30-79 217-251 (298)
38 COG2121 Uncharacterized protei 79.4 5.9 0.00013 32.0 5.6 47 30-78 140-188 (214)
39 PRK07920 lipid A biosynthesis 66.9 28 0.00061 28.3 6.9 68 30-121 215-282 (298)
40 PLN02349 glycerol-3-phosphate 64.5 11 0.00023 33.4 4.2 74 30-109 330-411 (426)
41 KOG3730|consensus 59.3 15 0.00032 33.6 4.3 48 62-110 316-373 (685)
42 PRK03355 glycerol-3-phosphate 55.3 38 0.00083 32.2 6.4 24 64-87 122-145 (783)
43 COG1730 GIM5 Predicted prefold 49.9 60 0.0013 24.6 5.7 69 48-120 55-131 (145)
44 PRK06553 lipid A biosynthesis 45.0 43 0.00093 27.4 4.6 34 30-78 236-269 (308)
45 KOG3960|consensus 43.5 45 0.00097 28.0 4.4 91 39-129 47-154 (284)
46 KOG1618|consensus 41.6 22 0.00048 30.9 2.4 41 23-65 188-245 (389)
47 PRK06628 lipid A biosynthesis 41.6 73 0.0016 25.7 5.4 34 30-78 217-250 (290)
48 PF15482 CCER1: Coiled-coil do 38.9 41 0.00089 26.8 3.4 25 96-120 182-206 (214)
49 COG2937 PlsB Glycerol-3-phosph 37.6 46 0.001 31.7 4.0 67 12-81 380-479 (810)
50 PRK05646 lipid A biosynthesis 35.0 1.5E+02 0.0032 24.2 6.2 71 30-122 227-297 (310)
51 COG5509 Uncharacterized small 35.0 61 0.0013 21.5 3.2 26 99-124 27-52 (65)
52 cd00890 Prefoldin Prefoldin is 32.9 1.5E+02 0.0032 20.5 5.2 15 64-78 68-82 (129)
53 COG5000 NtrY Signal transducti 29.6 1.4E+02 0.0031 28.2 5.7 34 91-129 522-555 (712)
54 TIGR03703 plsB glycerol-3-phos 29.1 1E+02 0.0022 29.4 4.9 25 60-84 150-174 (799)
55 PRK06946 lipid A biosynthesis 28.7 1.8E+02 0.0039 23.5 5.8 71 30-122 214-284 (293)
56 PF03279 Lip_A_acyltrans: Bact 27.4 1.7E+02 0.0036 23.4 5.3 36 30-79 225-260 (295)
57 PF11454 DUF3016: Protein of u 27.0 90 0.0019 23.5 3.4 42 66-111 3-44 (141)
58 PRK08905 lipid A biosynthesis 25.8 1.7E+02 0.0038 23.5 5.2 69 30-121 205-273 (289)
59 PRK10803 tol-pal system protei 25.5 71 0.0015 25.9 2.8 22 99-120 63-84 (263)
60 PRK03947 prefoldin subunit alp 25.4 1.9E+02 0.0041 20.7 4.9 71 48-119 55-130 (140)
61 PF10504 DUF2452: Protein of u 25.4 1.5E+02 0.0033 22.9 4.4 47 70-120 25-75 (159)
62 PRK08706 lipid A biosynthesis 25.1 2.1E+02 0.0045 22.9 5.5 70 30-122 211-280 (289)
63 PF08372 PRT_C: Plant phosphor 24.0 2E+02 0.0042 22.0 4.8 28 95-122 64-91 (156)
64 PF06098 Radial_spoke_3: Radia 23.9 2.2E+02 0.0047 23.9 5.5 30 49-78 93-127 (291)
65 PHA00743 helix-turn-helix prot 23.2 1.5E+02 0.0033 18.8 3.4 20 90-109 28-49 (51)
66 PF10146 zf-C4H2: Zinc finger- 21.6 2E+02 0.0044 23.2 4.7 30 90-119 74-103 (230)
67 COG4929 Uncharacterized membra 21.5 34 0.00074 27.2 0.2 12 8-19 142-153 (190)
68 TIGR02207 lipid_A_htrB lipid A 21.4 3.1E+02 0.0068 22.1 5.9 71 30-122 223-293 (303)
69 PF14728 PHTB1_C: PTHB1 C-term 21.3 3.8E+02 0.0083 23.1 6.6 20 66-85 188-207 (377)
70 PF04380 BMFP: Membrane fusoge 21.0 1.8E+02 0.0038 19.5 3.7 25 94-118 54-78 (79)
71 cd00584 Prefoldin_alpha Prefol 20.9 2.4E+02 0.0052 19.8 4.6 71 48-118 48-122 (129)
72 TIGR00293 prefoldin, archaeal 20.5 3.1E+02 0.0067 19.1 5.2 56 65-120 68-123 (126)
73 PF11853 DUF3373: Protein of u 20.4 1.2E+02 0.0025 27.5 3.3 21 104-124 31-51 (489)
74 PF02996 Prefoldin: Prefoldin 20.4 2.5E+02 0.0054 19.2 4.5 18 60-78 55-72 (120)
75 PRK06860 lipid A biosynthesis 20.2 3E+02 0.0064 22.4 5.5 71 30-122 229-299 (309)
No 1
>KOG2847|consensus
Probab=100.00 E-value=2.9e-33 Score=226.74 Aligned_cols=110 Identities=32% Similarity=0.461 Sum_probs=105.3
Q ss_pred ccccCceeeecCCCcchhe----eehcccCCCCeeeeEEeeccCccCCCCCCCCCcCCCeEEEEEcCCcCCchhHHHHHh
Q psy8442 11 YYLRSGMETVLPNEPLYYL----RSGMETVLPNEPSYYLRSGMETVLPNEPPYYLRRGKTLTFHVGDPIDLAPILTDLRA 86 (130)
Q Consensus 11 ~~~pEG~V~~~~~~~lrfk----RL~les~~pP~VvPi~~~Gme~V~P~g~~y~PR~gkrVtV~vGePId~~~l~~~~~~ 86 (130)
--||||+|+|-.++++||| |||+||..+|+||||||.|||++||++.+|.|++||+|||+|||||+++++..+..+
T Consensus 154 HiFPEGkV~q~~~~~~rfKWGigRlI~ea~~~PIVlPi~h~Gmedi~P~~~p~vp~~Gk~vtV~IG~P~~~~d~~~t~l~ 233 (286)
T KOG2847|consen 154 HIFPEGKVNQMEKEMLRFKWGIGRLILEAPKPPIVLPIWHTGMEDIMPEAPPYVPRFGKTVTVTIGDPINFDDVEWTVLA 233 (286)
T ss_pred EECCCceeeccccchhheeccceeeeecCCCCCEEeehhhhhHHHhCccCCCccCCCCCEEEEEeCCCcchhHHHHHHHh
Confidence 3699999999999999999 999999999999999999999999999778999999999999999999999888998
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8442 87 ANLSDREVRAALTQFIQDELYALKARTEDLHAAH 120 (130)
Q Consensus 87 ~~~~~~e~Rr~ITD~Iq~~i~~L~~q~e~lh~~~ 120 (130)
+..++.++|+++||+||+++++|+.|++++|..+
T Consensus 234 ~~~~~p~~~k~~td~iq~~~qdL~~~~~~~~~~~ 267 (286)
T KOG2847|consen 234 EKVSTPKLRKALTDEIQERFQDLREQVERLLRAH 267 (286)
T ss_pred hccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999854
No 2
>PTZ00261 acyltransferase; Provisional
Probab=99.11 E-value=4e-10 Score=95.57 Aligned_cols=94 Identities=15% Similarity=0.122 Sum_probs=70.8
Q ss_pred cccccCceeeecCCCcchhe----eehcccCCCCeeeeEEeeccCccCCCCCCCCCcCCCeEEEEEcC-CcCCchhHH-H
Q psy8442 10 SYYLRSGMETVLPNEPLYYL----RSGMETVLPNEPSYYLRSGMETVLPNEPPYYLRRGKTLTFHVGD-PIDLAPILT-D 83 (130)
Q Consensus 10 ~~~~pEG~V~~~~~~~lrfk----RL~les~~pP~VvPi~~~Gme~V~P~g~~y~PR~gkrVtV~vGe-PId~~~l~~-~ 83 (130)
-.-||||--+...++++.|| +++.+++.| |||+.+.|++++||.+..+..++| +++|.||+ ||++++.-. .
T Consensus 218 LvIFPEGTRS~~gg~L~pFK~GaF~LAieagvP--IVPvai~Gs~~~wP~g~~l~~~pg-~I~V~iG~~PI~~~~~~~~e 294 (355)
T PTZ00261 218 LAFFPEGAINKHPQVLQTFRYGTFATIIKHRME--VYYMVSVGSEKTWPWWMMIGGLPA-DMHIRIGAYPIDYDRDSSKD 294 (355)
T ss_pred EEEECCcCCcCCCCcCCCCcHHHHHHHHHcCCC--EEEEEEeChhhcCCCCCccCCCCc-eEEEEECCCCCCCCCCCHHH
Confidence 35799999986456689998 999999999 999999999999999875233567 99999999 999865411 1
Q ss_pred HHhcCCChHHHHHHHHHHHHHHHHHH
Q psy8442 84 LRAANLSDREVRAALTQFIQDELYAL 109 (130)
Q Consensus 84 ~~~~~~~~~e~Rr~ITD~Iq~~i~~L 109 (130)
+.+ .-++...++.|+|++++.++
T Consensus 295 L~~---~lr~lmqe~~~~I~~el~~~ 317 (355)
T PTZ00261 295 VAV---GLQQRMQKVRDEIAAEVAAA 317 (355)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHhh
Confidence 110 12334566777777777665
No 3
>cd07987 LPLAT_MGAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this suubgroup are such LPLATs as 2-acylglycerol O-acyltransferase (MGAT), and similar proteins.
Probab=99.07 E-value=8.9e-11 Score=90.48 Aligned_cols=94 Identities=18% Similarity=0.045 Sum_probs=70.6
Q ss_pred cccccCceeeecC---C---Ccchhe----eehcccCCCCeeeeEEeeccCccCCCCCC-------------CCCcCCCe
Q psy8442 10 SYYLRSGMETVLP---N---EPLYYL----RSGMETVLPNEPSYYLRSGMETVLPNEPP-------------YYLRRGKT 66 (130)
Q Consensus 10 ~~~~pEG~V~~~~---~---~~lrfk----RL~les~~pP~VvPi~~~Gme~V~P~g~~-------------y~PR~gkr 66 (130)
-.-||||-..... + .++.|| +||+++++| |||+++.|+++++|.+.. .+|+.+ +
T Consensus 92 l~ifPeGtr~~~~~~~~~~~~~~~~~~G~~~lA~~~~~p--IvPv~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~~~-~ 168 (212)
T cd07987 92 VLIFPGGAREALKSKREEYYLLWKKRKGFARLALRAGAP--IVPVFTFGEEELFRVLGDPDGPVGKRLFRLLPLPRRL-P 168 (212)
T ss_pred EEEEcCCHHHHhccCCCeEEEEECCCcCHHHHHHHcCCC--eEeEEEeCcHHHHhhhccCCCCceeehhceeccCCCC-c
Confidence 3569999764211 1 256676 999999999 999999999999997541 256665 8
Q ss_pred EEEEEcCCcCCchhHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Q psy8442 67 LTFHVGDPIDLAPILTDLRAANLSDREVRAALTQFIQDELYALKA 111 (130)
Q Consensus 67 VtV~vGePId~~~l~~~~~~~~~~~~e~Rr~ITD~Iq~~i~~L~~ 111 (130)
++|.||+||++.+. .... .+.+...+++++++++|++|-.
T Consensus 169 i~v~~G~Pi~~~~~-~~~~----~~~~~~~~~~~~~~~~l~~l~~ 208 (212)
T cd07987 169 LYPVFGEPIVVPRP-PIPD----PPDEDVEELHQKYIAALRELIE 208 (212)
T ss_pred ceEEeCCCccCCCC-CCCC----cCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998754 1111 3466678899999999988844
No 4
>PRK15018 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional
Probab=99.01 E-value=1.4e-09 Score=87.38 Aligned_cols=90 Identities=14% Similarity=0.200 Sum_probs=65.4
Q ss_pred ccccCceeeecCCCcchhe----eehcccCCCCeeeeEEeeccCccCCCCCCCCCcCCCeEEEEEcCCcCCchhHHHHHh
Q psy8442 11 YYLRSGMETVLPNEPLYYL----RSGMETVLPNEPSYYLRSGMETVLPNEPPYYLRRGKTLTFHVGDPIDLAPILTDLRA 86 (130)
Q Consensus 11 ~~~pEG~V~~~~~~~lrfk----RL~les~~pP~VvPi~~~Gme~V~P~g~~y~PR~gkrVtV~vGePId~~~l~~~~~~ 86 (130)
.-||||--+. .+++++|| +++.++++| |+|+++.|+.++++... .+.| +|+|.||+||+++++ .. .
T Consensus 143 ~IFPEGTRs~-~g~l~~Fk~Ga~~lA~~~~~P--IvPv~i~g~~~~~~~~~---~~~g-~i~v~~~~PI~~~~~-~~-~- 212 (245)
T PRK15018 143 WMFPEGTRSR-GRGLLPFKTGAFHAAIAAGVP--IIPVCVSTTSNKINLNR---LHNG-LVIVEMLPPIDVSQY-GK-D- 212 (245)
T ss_pred EEECCccCCC-CCCCCCccHHHHHHHHHcCCC--EEEEEEECcccccccCC---ccCe-eEEEEEcCCCcCCCC-Ch-h-
Confidence 4799998774 67899998 999999999 99999999999887433 2445 999999999999765 11 1
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHH
Q psy8442 87 ANLSDREVRAALTQFIQDELYALKART 113 (130)
Q Consensus 87 ~~~~~~e~Rr~ITD~Iq~~i~~L~~q~ 113 (130)
+..++...+.+.+++.+.+|..+.
T Consensus 213 ---~~~~l~~~v~~~i~~~~~~l~~~~ 236 (245)
T PRK15018 213 ---QVRELAAHCRSIMEQKIAELDKEV 236 (245)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223444444555555555554443
No 5
>PLN02901 1-acyl-sn-glycerol-3-phosphate acyltransferase
Probab=98.94 E-value=2.3e-09 Score=83.66 Aligned_cols=82 Identities=13% Similarity=0.199 Sum_probs=65.1
Q ss_pred CcccccCceeeecCCCcchhe----eehcccCCCCeeeeEEeeccCccCCCCCCCCCcCCCeEEEEEcCCcCCchhHHHH
Q psy8442 9 PSYYLRSGMETVLPNEPLYYL----RSGMETVLPNEPSYYLRSGMETVLPNEPPYYLRRGKTLTFHVGDPIDLAPILTDL 84 (130)
Q Consensus 9 ~~~~~pEG~V~~~~~~~lrfk----RL~les~~pP~VvPi~~~Gme~V~P~g~~y~PR~gkrVtV~vGePId~~~l~~~~ 84 (130)
.-..||||..+. .+++.+|+ +++.++++| |+|+++.|+++++|.+..+..+.+ +++|.||+||+.++
T Consensus 124 ~v~IfPEGtr~~-~~~~~~f~~G~~~lA~~~~~p--IvPv~i~g~~~~~~~~~~~~~~~~-~i~v~~~~pi~~~~----- 194 (214)
T PLN02901 124 SVFFFPEGTRSK-DGKLAAFKKGAFSVAAKTGVP--VVPITLVGTGKIMPNGKEGILNPG-SVKVVIHPPIEGSD----- 194 (214)
T ss_pred EEEEeCCCCCCC-CCcccCchhhHHHHHHHcCCC--EEEEEEecchhhCcCCCcccccCC-eEEEEECCCcCCCC-----
Confidence 345899998764 67888997 999999999 999999999999999875566777 89999999999742
Q ss_pred HhcCCChHHHHHHHHHHHHHHHHHH
Q psy8442 85 RAANLSDREVRAALTQFIQDELYAL 109 (130)
Q Consensus 85 ~~~~~~~~e~Rr~ITD~Iq~~i~~L 109 (130)
+.++++.+++.|.+.
T Consensus 195 ----------~~~l~~~~~~~i~~~ 209 (214)
T PLN02901 195 ----------ADELCNEARKVIAES 209 (214)
T ss_pred ----------HHHHHHHHHHHHHHH
Confidence 234556666665544
No 6
>PLN02783 diacylglycerol O-acyltransferase
Probab=98.80 E-value=1.1e-08 Score=85.00 Aligned_cols=97 Identities=18% Similarity=0.164 Sum_probs=68.4
Q ss_pred ccccCceee---ecCCC---cchhe----eehcccCCCCeeeeEEeeccCccCCC---CCC-------------------
Q psy8442 11 YYLRSGMET---VLPNE---PLYYL----RSGMETVLPNEPSYYLRSGMETVLPN---EPP------------------- 58 (130)
Q Consensus 11 ~~~pEG~V~---~~~~~---~lrfk----RL~les~~pP~VvPi~~~Gme~V~P~---g~~------------------- 58 (130)
.-||||--. ...+. .+.|| ++|+++++| |||+++.|.++.... +.+
T Consensus 174 ~IfPeGtre~~~~~~~~~~~~~~~k~G~~~lA~~~g~P--IVPv~i~G~~~~~~~~~~~~~~~~~l~r~~~~~p~~~wg~ 251 (315)
T PLN02783 174 IIVPGGVQECLYMEHGSEVAYLKSRKGFVKIAMETGAP--LVPVFCFGQTRAYKWWKPGGPLVPKLSRAIGFTPIVFWGR 251 (315)
T ss_pred EEEcCCchhhcccCCCccccccCCCCcHHHHHHHcCCC--EEEEEEECchhhhhhhcCCccHHHHHHHhcCcCceeeecc
Confidence 458999421 01222 24565 999999999 999999997665432 211
Q ss_pred ---CCCcCCCeEEEEEcCCcCCchhHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8442 59 ---YYLRRGKTLTFHVGDPIDLAPILTDLRAANLSDREVRAALTQFIQDELYALKARTEDLH 117 (130)
Q Consensus 59 ---y~PR~gkrVtV~vGePId~~~l~~~~~~~~~~~~e~Rr~ITD~Iq~~i~~L~~q~e~lh 117 (130)
.+|+. ++++|.||+||++++. . . .+.+...+++++++++|++|-.+.+...
T Consensus 252 ~~~piP~~-~~i~vvvG~PI~v~~~-~--~----~~~e~v~~~~~~~~~al~~L~~~~k~~~ 305 (315)
T PLN02783 252 YGSPIPHR-TPMHVVVGKPIEVKKN-P--Q----PSQEEVAEVLEQFVEALQDLFEKHKARA 305 (315)
T ss_pred cCcccCCC-ceEEEEecCCccCCCC-C--C----CCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 14554 4999999999999753 1 1 2455688999999999999987776644
No 7
>cd07986 LPLAT_ACT14924-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.
Probab=98.63 E-value=8.8e-09 Score=79.89 Aligned_cols=87 Identities=18% Similarity=0.233 Sum_probs=59.8
Q ss_pred CcccccCceeeecCC-----Ccchhe----eehcccCCCCeeeeEEeeccCcc--------CCCCC------CCCCcCCC
Q psy8442 9 PSYYLRSGMETVLPN-----EPLYYL----RSGMETVLPNEPSYYLRSGMETV--------LPNEP------PYYLRRGK 65 (130)
Q Consensus 9 ~~~~~pEG~V~~~~~-----~~lrfk----RL~les~~pP~VvPi~~~Gme~V--------~P~g~------~y~PR~gk 65 (130)
.-.-||||..+.... ..+.|| +|+.++++| |||+++.|.+.. +|.-. .++.....
T Consensus 100 ~l~IFPEGtrs~~~~~~g~~~~~~fk~G~~~lA~~~~~p--IvPv~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (210)
T cd07986 100 ALIIFPAGRVSTASPPFGRVSDRPWNPFVARLARKAKAP--VVPVYFSGRNSRLFYLAGLIHPTLRTLLLPRELLNKRGK 177 (210)
T ss_pred EEEEECCcccccccccCCccccCCccHHHHHHHHHHCCC--EEEEEEeeeCcHHHHHHHccCHHHHHHHHHHHHHHhCCC
Confidence 445799998876332 257888 999999999 999999998743 32210 00111345
Q ss_pred eEEEEEcCCcCCchhHHHHHhcCCChHHHHHHHHHHHHHHH
Q psy8442 66 TLTFHVGDPIDLAPILTDLRAANLSDREVRAALTQFIQDEL 106 (130)
Q Consensus 66 rVtV~vGePId~~~l~~~~~~~~~~~~e~Rr~ITD~Iq~~i 106 (130)
+|+|.||+||+.+++ .... + ++++|+.+++.+
T Consensus 178 ~v~v~~g~pI~~~~~-~~~~----~----~~~l~~~~~~~~ 209 (210)
T cd07986 178 TIRIRVGRPIPPEEL-ARFE----D----AEELADFLRLHT 209 (210)
T ss_pred EEEEEeCCcCCHHHH-hcCC----C----HHHHHHHHHHhc
Confidence 999999999998765 2221 1 567888887753
No 8
>cd07992 LPLAT_AAK14816-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown AAK14816-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized glycerol-3-phosphate acyltransferases such as the Plasmodium falciparum locus AAK14816 putative acyltransferase, and similar proteins.
Probab=98.52 E-value=1.7e-07 Score=71.94 Aligned_cols=82 Identities=15% Similarity=0.076 Sum_probs=58.8
Q ss_pred CCcccccCceeeecCCCcchhe----eehcc------cCCCCeeeeEEeeccCccCCCCCCCCCcCCCeEEEEEcCCcCC
Q psy8442 8 EPSYYLRSGMETVLPNEPLYYL----RSGME------TVLPNEPSYYLRSGMETVLPNEPPYYLRRGKTLTFHVGDPIDL 77 (130)
Q Consensus 8 ~~~~~~pEG~V~~~~~~~lrfk----RL~le------s~~pP~VvPi~~~Gme~V~P~g~~y~PR~gkrVtV~vGePId~ 77 (130)
..-.-||||..+. .+.+.+|| +|+.+ +++| |+|+++.+.... . +..+|+|.||+||++
T Consensus 111 ~~l~IFPEGtr~~-~~~~~~fk~G~~~lA~~a~~~~~~~vp--IvPv~i~~~~~~-------~--~~~~i~i~~g~pi~~ 178 (203)
T cd07992 111 GAIGIFPEGGSHD-RPRLLPLKAGAARMALEALEAGQKDVK--IVPVGLNYEDKS-------R--FRSRVLVEFGKPISV 178 (203)
T ss_pred CEEEEeCCCCCCC-CCCccCcCccHHHHHHHHHhcCCCCCe--EEeeeEEeCCCC-------C--CCCeEEEEECCCccc
Confidence 3346799999874 57788998 88875 6888 999999876532 1 134999999999999
Q ss_pred chhHHHHHhcCCChHHHHHHHHHHHHHHH
Q psy8442 78 APILTDLRAANLSDREVRAALTQFIQDEL 106 (130)
Q Consensus 78 ~~l~~~~~~~~~~~~e~Rr~ITD~Iq~~i 106 (130)
++..... +..+.-+.++|.|+++|
T Consensus 179 ~~~~~~~-----~~~~~~~~~~~~~~~~~ 202 (203)
T cd07992 179 SAFEEAE-----ASRDVEKKLINQLEAEL 202 (203)
T ss_pred ccccccc-----cchhHHHHHHHHHHHhh
Confidence 8752111 23445567777777765
No 9
>cd07991 LPLAT_LPCAT1-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LPCAT1-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lysophosphatidylcholine acyltransferase 1 (LPCAT-1), glycerol-3-phosphate acyltransferase 3 (GPAT3), and similar sequences.
Probab=98.43 E-value=5.7e-07 Score=69.70 Aligned_cols=88 Identities=8% Similarity=-0.015 Sum_probs=64.4
Q ss_pred CCcccccCceeeecCCCcchheeehcccCCCCeeeeEEeeccCccCCCCCC---C---------CCcCCCeEEEEEcCCc
Q psy8442 8 EPSYYLRSGMETVLPNEPLYYLRSGMETVLPNEPSYYLRSGMETVLPNEPP---Y---------YLRRGKTLTFHVGDPI 75 (130)
Q Consensus 8 ~~~~~~pEG~V~~~~~~~lrfkRL~les~~pP~VvPi~~~Gme~V~P~g~~---y---------~PR~gkrVtV~vGePI 75 (130)
.+-.-||||-.+ ..+.+++||.-+++++.| |+||++.|....++..-+ + +..+..+|+|.||+||
T Consensus 98 ~~v~iFPEGtrs-~~~~l~~Fk~gaf~~~~p--I~Pv~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~v~~l~pi 174 (211)
T cd07991 98 PPILIFPEGTTT-NGKALIMFKKGAFEPGVP--VQPVAIRYPNKFVDAFWNSSGYSSLMYLFRLLTQPANVLEVEFLPVY 174 (211)
T ss_pred CeEEEecCcccc-CCCEEEeeccccccCCCe--eEEEEEEecCccCCcccCCCCccHHHHHHHHhCCcceEEEEEECCCc
Confidence 455789999998 367789999777889999 999999998876554311 1 1122349999999999
Q ss_pred CCchhHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Q psy8442 76 DLAPILTDLRAANLSDREVRAALTQFIQDELYAL 109 (130)
Q Consensus 76 d~~~l~~~~~~~~~~~~e~Rr~ITD~Iq~~i~~L 109 (130)
+.+ . ... -++++++++++.|.+.
T Consensus 175 ~~~-~-~~~---------~~~~l~~~v~~~i~~~ 197 (211)
T cd07991 175 TPS-E-EGE---------DPKEFANRVRLIMANK 197 (211)
T ss_pred ccc-c-CCC---------CHHHHHHHHHHHHHHh
Confidence 984 1 111 1567888888888864
No 10
>cd07985 LPLAT_GPAT Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT. Lysophospholipid acyltransferase (LPLAT) superfamily member: glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB). LPLATs are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. This subgroup includes glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB).
Probab=98.37 E-value=1.2e-06 Score=70.95 Aligned_cols=92 Identities=18% Similarity=0.214 Sum_probs=67.7
Q ss_pred ccccCceeeecC---CCcch--h--------eeehcccCCCCeeeeEEeeccCccCCCCCCC--------CCcCCCeEEE
Q psy8442 11 YYLRSGMETVLP---NEPLY--Y--------LRSGMETVLPNEPSYYLRSGMETVLPNEPPY--------YLRRGKTLTF 69 (130)
Q Consensus 11 ~~~pEG~V~~~~---~~~lr--f--------kRL~les~~pP~VvPi~~~Gme~V~P~g~~y--------~PR~gkrVtV 69 (130)
+-||||-=+. + +++.. | .+|+..|++|=-|+|+++.+. ++||....+ .+++. .|.|
T Consensus 119 ~IfPEGtR~r-~~~~g~~~p~~Fd~~~~~~~~~La~~s~~p~hi~Plai~~y-di~Ppp~~v~~~ige~r~~~f~-~v~i 195 (235)
T cd07985 119 WVAPSGGRDR-PDANGEWYPDPFDPSAVEMMRLLAQKSRVPTHLYPMALLTY-DIMPPPKQVEKEIGEKRAVAFT-GVGL 195 (235)
T ss_pred EEcCCCCCCC-CCCCCCccCCccchHHHHHHHHHHHhcCCCceEEeeEEEee-cccCCCcccccccccccccccc-ceEE
Confidence 4689996552 2 33222 3 288888999778999999955 566665332 34666 8999
Q ss_pred EEcCCcCCchhHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Q psy8442 70 HVGDPIDLAPILTDLRAANLSDREVRAALTQFIQDELYAL 109 (130)
Q Consensus 70 ~vGePId~~~l~~~~~~~~~~~~e~Rr~ITD~Iq~~i~~L 109 (130)
.||+||+++++...+. +..+.+.++|+.|++++.++
T Consensus 196 ~vg~~i~~~~~~~~~~----d~~e~~~~~~~~i~~~v~~~ 231 (235)
T cd07985 196 AVGEEIDFSAIAATHK----DPEEVREAFSKAAFDSVKRL 231 (235)
T ss_pred EecCCccchhhhcccC----CcHHHHHHHHHHHHHHHHHH
Confidence 9999999998755554 55677899999999998776
No 11
>cd07983 LPLAT_DUF374-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: DUF374. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are the uncharacterized DUF374 phospholipid/glycerol acyltransferases and similar proteins.
Probab=98.33 E-value=1.3e-06 Score=65.91 Aligned_cols=83 Identities=11% Similarity=-0.012 Sum_probs=58.4
Q ss_pred cccccCceeeecCCCcchhe----eehcccCCCCeeeeEEeeccCccCCCCC-C-CCCcCCCeEEEEEcCCcCCchhHHH
Q psy8442 10 SYYLRSGMETVLPNEPLYYL----RSGMETVLPNEPSYYLRSGMETVLPNEP-P-YYLRRGKTLTFHVGDPIDLAPILTD 83 (130)
Q Consensus 10 ~~~~pEG~V~~~~~~~lrfk----RL~les~~pP~VvPi~~~Gme~V~P~g~-~-y~PR~gkrVtV~vGePId~~~l~~~ 83 (130)
-..||||- .+....|| +|+.++++| |||+++.|+....+.+- . .+|+...+++|.||+||++++.
T Consensus 100 v~ifpeG~----r~~~~~~~~G~~~lA~~~~~p--IvPv~i~~~~~~~~~~~~~~~~p~~~~~~~v~~~~pi~~~~~--- 170 (189)
T cd07983 100 IAITPDGP----RGPRYKVKPGVILLARKSGAP--IVPVAIAASRAWRLKSWDRFIIPKPFSRVVIVFGEPIHVPPD--- 170 (189)
T ss_pred EEEcCCCC----CCcceecchHHHHHHHHhCCC--EEEEEEEEEccEeccCccccccCCCCcceEEEEeCCEeeCCC---
Confidence 35799994 24456787 999999999 99999999987444331 1 2565534899999999998632
Q ss_pred HHhcCCChHHHHHHHHHHHHHHHH
Q psy8442 84 LRAANLSDREVRAALTQFIQDELY 107 (130)
Q Consensus 84 ~~~~~~~~~e~Rr~ITD~Iq~~i~ 107 (130)
.+.+...++|+.+++.|.
T Consensus 171 ------~~~~~~~~~~~~~~~~~~ 188 (189)
T cd07983 171 ------ADEEELEEYRLELEAALN 188 (189)
T ss_pred ------CCHHHHHHHHHHHHHHhh
Confidence 113345677777776653
No 12
>cd07989 LPLAT_AGPAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.
Probab=98.30 E-value=1.5e-06 Score=64.36 Aligned_cols=81 Identities=23% Similarity=0.248 Sum_probs=63.7
Q ss_pred CcccccCceeeecCCCcchhe----eehcccCCCCeeeeEEeeccCccCCCCCCCCCcCCCeEEEEEcCCcCCchhHHHH
Q psy8442 9 PSYYLRSGMETVLPNEPLYYL----RSGMETVLPNEPSYYLRSGMETVLPNEPPYYLRRGKTLTFHVGDPIDLAPILTDL 84 (130)
Q Consensus 9 ~~~~~pEG~V~~~~~~~lrfk----RL~les~~pP~VvPi~~~Gme~V~P~g~~y~PR~gkrVtV~vGePId~~~l~~~~ 84 (130)
.-..||||.... .+...+|+ ++|++++.| |+|+++.|.+...+.. ..+..+.+++|.||+||+.++. +
T Consensus 99 ~l~i~peg~~~~-~~~~~~~~~g~~~lA~~~~~~--Vvpv~~~~~~~~~~~~--~~~~~~~~~~i~~~~pi~~~~~-~-- 170 (184)
T cd07989 99 SVVIFPEGTRSR-DGELLPFKSGAFRLAKEAGVP--IVPVAISGTWGSLPKG--KKLPRPGRVTVRIGEPIPPEGL-E-- 170 (184)
T ss_pred EEEEecCcccCC-CCCcCCCcccHHHHHHHcCCC--EEeEEEeChhhhCcCC--CCcCCCCcEEEEEcCCcChhhh-c--
Confidence 345689999885 37888987 999999999 9999999999988776 3566677999999999998764 1
Q ss_pred HhcCCChHHHHHHHHHHH
Q psy8442 85 RAANLSDREVRAALTQFI 102 (130)
Q Consensus 85 ~~~~~~~~e~Rr~ITD~I 102 (130)
...+.++.|+|++
T Consensus 171 -----~~~~~~~~~~~~~ 183 (184)
T cd07989 171 -----LAEEDRKELREKV 183 (184)
T ss_pred -----cchHHHHHHHHhh
Confidence 2344466777664
No 13
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.27 E-value=1.8e-06 Score=79.17 Aligned_cols=66 Identities=12% Similarity=0.004 Sum_probs=49.5
Q ss_pred CcccccCceeeecCCCcchhe----eehcccCCCCeeeeEEeeccCccC-C--CCC---C-CCCcCCCeEEEEEcCCcCC
Q psy8442 9 PSYYLRSGMETVLPNEPLYYL----RSGMETVLPNEPSYYLRSGMETVL-P--NEP---P-YYLRRGKTLTFHVGDPIDL 77 (130)
Q Consensus 9 ~~~~~pEG~V~~~~~~~lrfk----RL~les~~pP~VvPi~~~Gme~V~-P--~g~---~-y~PR~gkrVtV~vGePId~ 77 (130)
.-.-||||..+. .++++.|| +++.+++.| |+|+++.|...-+ + .+. . ...+.+ +|+|.||+||+.
T Consensus 513 ~~~ifPeGt~~~-~~~~~~~~~g~~~~a~~~~~~--i~pv~~~g~~~~~~~~~~~~~~~~~~~~~~~-~v~v~~~~pi~~ 588 (1146)
T PRK08633 513 VVCIFPEGAITR-NGQLNEFKRGFELIVKGTDVP--IIPFYIRGLWGSIFSRASGKFLWRWPTRIPY-PVTVAFGKPMPA 588 (1146)
T ss_pred EEEEECCcCCCC-CCCccchhHHHHHHHHHCCCC--EEEEEEecccccccccccccccccccCCCCc-eEEEEECCCcCc
Confidence 346799999984 78899998 999999999 9999999974322 1 111 1 122334 899999999997
Q ss_pred c
Q psy8442 78 A 78 (130)
Q Consensus 78 ~ 78 (130)
.
T Consensus 589 ~ 589 (1146)
T PRK08633 589 H 589 (1146)
T ss_pred c
Confidence 5
No 14
>cd06551 LPLAT Lysophospholipid acyltransferases (LPLATs) of glycerophospholipid biosynthesis. Lysophospholipid acyltransferase (LPLAT) superfamily members are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis. These proteins catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this superfamily are LPLATs such as glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB), 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), lysophosphatidylcholine acyltransferase 1 (LPCAT-1), lysophosphatidylethanolamine acyltransferase (LPEAT, also known as, MBOAT2, membrane-bound O-acyltransferase domain-containing protein 2), lipid A biosynthesis lauroyl/myristoyl acyltransferase, 2-acylglycerol O-acyltransferase (MGAT), dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-p
Probab=98.21 E-value=2.1e-06 Score=63.60 Aligned_cols=64 Identities=14% Similarity=0.147 Sum_probs=51.5
Q ss_pred CCCcccccCceeeecCCCcchhe----eehcccCCCCeeeeEEeeccCccCCCCCCCCCcCCCeEEEEEcCCcCCchh
Q psy8442 7 NEPSYYLRSGMETVLPNEPLYYL----RSGMETVLPNEPSYYLRSGMETVLPNEPPYYLRRGKTLTFHVGDPIDLAPI 80 (130)
Q Consensus 7 ~~~~~~~pEG~V~~~~~~~lrfk----RL~les~~pP~VvPi~~~Gme~V~P~g~~y~PR~gkrVtV~vGePId~~~l 80 (130)
+.....||||..+...+....|+ +|+.+++.+ |||+++.|.+..+ ..+.+++|.||+||..++.
T Consensus 101 g~~v~ifPeG~~~~~~~~~~~~~~g~~~la~~~~~~--IvPv~i~~~~~~~--------~~~~~~~i~~~~pi~~~~~ 168 (187)
T cd06551 101 GSVVWIFPEGTRTRRDKRPLQFKPGVAHLAEKAGVP--IVPVALRYTFELF--------EQFPEIFVRIGPPIPYAET 168 (187)
T ss_pred CcEEEEeCCcccCCCCCCcccccchHHHHHHHcCCc--EEEEEEecccccc--------CCCCcEEEEECCCcccccc
Confidence 35567899999875333677786 999999999 9999999998776 2234899999999999754
No 15
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.19 E-value=3.8e-06 Score=77.77 Aligned_cols=89 Identities=16% Similarity=0.055 Sum_probs=62.3
Q ss_pred ccccCceeeecCCCcchhe----eehcccCCCCeeeeEEeeccCccCCC--CCCC-CCcCCCeEEEEEcCCcCCchhHHH
Q psy8442 11 YYLRSGMETVLPNEPLYYL----RSGMETVLPNEPSYYLRSGMETVLPN--EPPY-YLRRGKTLTFHVGDPIDLAPILTD 83 (130)
Q Consensus 11 ~~~pEG~V~~~~~~~lrfk----RL~les~~pP~VvPi~~~Gme~V~P~--g~~y-~PR~gkrVtV~vGePId~~~l~~~ 83 (130)
.-||||..+. .+++++|| +++.++++| |+||++.|+...... +..+ ..+.+ +|+|.||+||++++. ..
T Consensus 527 ~ifPeGtr~~-~~~~~~f~~g~~~~a~~~~~~--i~pv~i~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~-~~ 601 (1140)
T PRK06814 527 VIFPEGRITV-TGSLMKIYDGPGMIADKAGAM--VVPVRIDGLQFTHFSRLKNQVRRKWFP-KVTVTILPPVKLAVD-PE 601 (1140)
T ss_pred EEeCCCCCCC-CCCccccchHHHHHHHHCCCC--EEEEEEcCcccccccccCCCcccccCC-ceEEEecCCcccCCC-cc
Confidence 5699999984 78899998 999999999 999999999865433 1221 11224 799999999998754 21
Q ss_pred HHhcCCChHHHHHHHHHHHHHHHHHH
Q psy8442 84 LRAANLSDREVRAALTQFIQDELYAL 109 (130)
Q Consensus 84 ~~~~~~~~~e~Rr~ITD~Iq~~i~~L 109 (130)
+ +..+.+..+.+.+++.+.++
T Consensus 602 l-----~~~e~r~~~~~~l~~~~~~~ 622 (1140)
T PRK06814 602 L-----KGRERRSAAGAALYDIMSDM 622 (1140)
T ss_pred c-----cchhhHHHHHHHHHHHHHHH
Confidence 2 23344555566666655554
No 16
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Probab=98.12 E-value=7.1e-06 Score=73.07 Aligned_cols=66 Identities=15% Similarity=0.047 Sum_probs=49.1
Q ss_pred CcccccCceeeecCCCcchhe----eehcccCCCCeeeeEEeeccCccC-CCCCCC--CCcCCCeEEEEEcCCcCCc
Q psy8442 9 PSYYLRSGMETVLPNEPLYYL----RSGMETVLPNEPSYYLRSGMETVL-PNEPPY--YLRRGKTLTFHVGDPIDLA 78 (130)
Q Consensus 9 ~~~~~pEG~V~~~~~~~lrfk----RL~les~~pP~VvPi~~~Gme~V~-P~g~~y--~PR~gkrVtV~vGePId~~ 78 (130)
.-.-||||..+. .++++.|| +++.++++| ||||++.|.+... +..... ...+. +++|.||+|+++.
T Consensus 99 ~~~iFPEGtr~~-~~~~~~~k~G~~~~a~~~~~p--ivPv~i~g~~~~~~~~~~~~~~~~~~~-~i~~~~~~p~~~~ 171 (718)
T PRK08043 99 PVVIFPEGRITV-TGSLMKIYDGAGFVAAKSGAT--VIPVRIEGAELTHFSRLKGLVKRRLFP-QITLHILPPTQLP 171 (718)
T ss_pred EEEEeCCCccCC-CCCccCcchHHHHHHHHCCCC--EEEEEEECCccCcccccCCccccccCC-ceEEEecCcccCC
Confidence 335799999884 77888998 999999999 9999999997632 211110 12233 7999999998874
No 17
>KOG2848|consensus
Probab=98.08 E-value=1.5e-05 Score=65.62 Aligned_cols=67 Identities=12% Similarity=0.164 Sum_probs=59.5
Q ss_pred CcccccCceeeecCCCcchhe----eehcccCCCCeeeeEEeeccCccCCCCCCCCCcCCCeEEEEEcCCcCCchh
Q psy8442 9 PSYYLRSGMETVLPNEPLYYL----RSGMETVLPNEPSYYLRSGMETVLPNEPPYYLRRGKTLTFHVGDPIDLAPI 80 (130)
Q Consensus 9 ~~~~~pEG~V~~~~~~~lrfk----RL~les~~pP~VvPi~~~Gme~V~P~g~~y~PR~gkrVtV~vGePId~~~l 80 (130)
--+-||||-=| ..+.++.|| .||..++.| ||||..+++.++++....++=+ | .|.|.|=+||+.+.+
T Consensus 165 kvWvFPEGTRn-~~g~llPFKKGAF~lAvqaqVP--IVPvv~ssy~~f~~~~~k~f~s-G-~v~V~vL~pI~Tegl 235 (276)
T KOG2848|consen 165 KVWVFPEGTRN-KEGRLLPFKKGAFHLAVQAQVP--IVPVVFSSYGDFYSTKEKVFNS-G-NVIVRVLPPIPTEGL 235 (276)
T ss_pred eEEEccCCccC-CCCcccccccceeeeehhcCCC--EEEEEEecccccccCccceeec-c-eEEEEEcCCCCccCC
Confidence 34679999887 588999998 999999999 9999999999999999884445 8 999999999998765
No 18
>COG0204 PlsC 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]
Probab=97.95 E-value=2.8e-05 Score=59.82 Aligned_cols=66 Identities=20% Similarity=0.274 Sum_probs=54.4
Q ss_pred CcccccCceeeecCCCcchhe----eehcccCCCCeeeeEEeeccCccCCCCCCCCCcCCCeEEEEEcCCcCCchhHH
Q psy8442 9 PSYYLRSGMETVLPNEPLYYL----RSGMETVLPNEPSYYLRSGMETVLPNEPPYYLRRGKTLTFHVGDPIDLAPILT 82 (130)
Q Consensus 9 ~~~~~pEG~V~~~~~~~lrfk----RL~les~~pP~VvPi~~~Gme~V~P~g~~y~PR~gkrVtV~vGePId~~~l~~ 82 (130)
.-..||||.-+...++.+.|| +++++++.| |+|+.+.|+....+.... . .+++.+|+|++.+....
T Consensus 140 ~l~iFPEGtr~~~~~~~~~~k~g~~~~a~~~~~P--ivPv~i~g~~~~~~~~~~-~-----~~~~~~~~pi~~~~~~~ 209 (255)
T COG0204 140 SLVIFPEGTRSRGGEELLPFKRGAARLALEAGVP--IVPVAIVGAEELFPSLKK-G-----KVKVRIGPPIDISALPE 209 (255)
T ss_pred EEEECCCcCcCCCccccCCCcchHHHHHHHcCCC--EEeEEEeCCcccccCCCc-e-----eEEEEecCCcCccccch
Confidence 345799999985324488887 999999999 999999999998888876 2 29999999999876643
No 19
>PRK03355 glycerol-3-phosphate acyltransferase; Validated
Probab=97.88 E-value=2.1e-05 Score=72.78 Aligned_cols=96 Identities=10% Similarity=0.011 Sum_probs=63.1
Q ss_pred CcccccCceeeecCCCcchhe----eehc-------ccCCCCeeeeEEee-------ccCccCCCCCCC-----------
Q psy8442 9 PSYYLRSGMETVLPNEPLYYL----RSGM-------ETVLPNEPSYYLRS-------GMETVLPNEPPY----------- 59 (130)
Q Consensus 9 ~~~~~pEG~V~~~~~~~lrfk----RL~l-------es~~pP~VvPi~~~-------Gme~V~P~g~~y----------- 59 (130)
+--+||||-=+ ..+.++.|| .+++ +++++ ||||++. |+-.-.+.|.+.
T Consensus 348 ~v~iFpEGTRS-rtGkLl~pK~Gll~~~~~a~~~~~~~~v~--IVPV~I~Yd~v~E~~~y~~e~~G~~k~~esl~~~~~~ 424 (783)
T PRK03355 348 NLSWYIEGTRS-RTGKLLPPKLGLLSYVADAYLDGRSDDVL--LQPVSISFDQLHEIGEYAAEARGGEKTPEGLRWLYNY 424 (783)
T ss_pred eEEEEecCCCC-CCCCCCcccccHHHHHHHHHHhcccCCCE--EEEEEEEecccccchhHHHHhcCCCcccccHHHHHHH
Confidence 55689999877 378899998 4454 46788 9999985 442222222211
Q ss_pred -----CCcCCCeEEEEEcCCcCCchhHHHHHhcCC-----ChHHHHHHHHHHHHHHHHHH
Q psy8442 60 -----YLRRGKTLTFHVGDPIDLAPILTDLRAANL-----SDREVRAALTQFIQDELYAL 109 (130)
Q Consensus 60 -----~PR~gkrVtV~vGePId~~~l~~~~~~~~~-----~~~e~Rr~ITD~Iq~~i~~L 109 (130)
.+++| +|.|.||+||++++++.... ..+ ......+.++++||.+|.+.
T Consensus 425 ~~~l~~~~~G-~i~V~fGePisl~~~~~~~~-~~~~~~~~~~~~~~~~la~~Vm~~In~~ 482 (783)
T PRK03355 425 IKAQGERNYG-KIYVRFGEPVSMRQYLGAPH-GPLTQDPDAKRLALQKMAFEVAWRINQV 482 (783)
T ss_pred HHHhccCCce-eEEEEECCCCCHHHhhcccc-ccccccchhhHHHHHHHHHHHHHHHHhc
Confidence 15678 99999999999988754321 111 12334566888888877653
No 20
>TIGR03703 plsB glycerol-3-phosphate O-acyltransferase. Members of this protein family are PlsB, glycerol-3-phosphate O-acyltransferase, present in E. coli and numerous related species. In many bacteria, PlsB is not found, and appears to be replaced by a two enzyme system for 1-acyl-glycerol-3-phosphate biosynthesis, the PlsX/Y system.
Probab=97.85 E-value=2.6e-05 Score=72.28 Aligned_cols=70 Identities=17% Similarity=0.157 Sum_probs=54.0
Q ss_pred CcccccCceeeecCCCcchhe----eehccc-------CCCCeeeeEEeeccCccCCCCC--------------------
Q psy8442 9 PSYYLRSGMETVLPNEPLYYL----RSGMET-------VLPNEPSYYLRSGMETVLPNEP-------------------- 57 (130)
Q Consensus 9 ~~~~~pEG~V~~~~~~~lrfk----RL~les-------~~pP~VvPi~~~Gme~V~P~g~-------------------- 57 (130)
+-.+||||-=+. .+.++.|| .+++++ +.+ ||||++ |.|+|+..+.
T Consensus 373 ~v~iFpEGtRSr-tGkll~pK~G~l~~a~~a~~~~~~~~v~--IVPVsI-~Yekv~E~~~y~~El~G~~K~kEsl~~~l~ 448 (799)
T TIGR03703 373 SVEYFVEGGRSR-TGRLLPPKTGMLAMTLQAMLRGIRRPIT--LVPVYI-GYEHVMEVATYLKELRGKRKEKESVFGVLK 448 (799)
T ss_pred EEEEEcCCCcCC-CCCccchHHHHHHHHHHHhhccCCCCcE--EEEEEE-ecccccchhHHHHHhcCCCccccCHHHHHH
Confidence 445899998884 78899998 788776 566 999977 9998886621
Q ss_pred --CCCCcCCCeEEEEEcCCcCCchhHHH
Q psy8442 58 --PYYLRRGKTLTFHVGDPIDLAPILTD 83 (130)
Q Consensus 58 --~y~PR~gkrVtV~vGePId~~~l~~~ 83 (130)
+-+.+.| +|.|.||+||++++++.+
T Consensus 449 ~~~~l~~~G-~i~V~FGePIsl~~~l~~ 475 (799)
T TIGR03703 449 TLRKLRNFG-QGYVNFGEPINLNDYLNK 475 (799)
T ss_pred HHhccCCCc-eEEEEeCCCccHHHHhhh
Confidence 0135678 999999999999887643
No 21
>cd07988 LPLAT_ABO13168-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ABO13168. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Acinetobacter baumannii ATCC 17978 locus ABO13168 putative acyltransferase, and similar proteins.
Probab=97.77 E-value=3.4e-05 Score=58.08 Aligned_cols=48 Identities=8% Similarity=-0.075 Sum_probs=39.6
Q ss_pred ccccCceeeecCCCcchhe----eehcccCCCCeeeeEEeeccCccCCCCCCCCCcCCCeEEEEEcCCcCCchh
Q psy8442 11 YYLRSGMETVLPNEPLYYL----RSGMETVLPNEPSYYLRSGMETVLPNEPPYYLRRGKTLTFHVGDPIDLAPI 80 (130)
Q Consensus 11 ~~~pEG~V~~~~~~~lrfk----RL~les~~pP~VvPi~~~Gme~V~P~g~~y~PR~gkrVtV~vGePId~~~l 80 (130)
.-||||.-+. ...|| +++.++++| |+|+++.+. +++|.||+||++++.
T Consensus 99 ~IFPEGtR~~----~~~fk~G~~~lA~~~~~P--IvPv~i~~~----------------~~~v~~g~pi~~~~~ 150 (163)
T cd07988 99 AIAPEGTRSK----VDKWKTGFYHIARGAGVP--ILLVYLDYK----------------RKTVGIGPLFEPSGD 150 (163)
T ss_pred EEeCCCCCCC----CcChhhHHHHHHHHcCCC--EEEEEEecC----------------cEEEEECCcCcCCCC
Confidence 5799997663 34787 999999999 999999864 358999999998754
No 22
>PRK04974 glycerol-3-phosphate acyltransferase; Validated
Probab=97.48 E-value=0.00015 Score=67.43 Aligned_cols=72 Identities=18% Similarity=0.197 Sum_probs=52.6
Q ss_pred CcccccCceeeecCCCcchhe----eehcccC-----CCCeeeeEEeeccCccCCCCC-------------C-C------
Q psy8442 9 PSYYLRSGMETVLPNEPLYYL----RSGMETV-----LPNEPSYYLRSGMETVLPNEP-------------P-Y------ 59 (130)
Q Consensus 9 ~~~~~pEG~V~~~~~~~lrfk----RL~les~-----~pP~VvPi~~~Gme~V~P~g~-------------~-y------ 59 (130)
+--+||||-=+. .+.++.+| .+++++. .+=.||||++ |.|+|+-.+. . +
T Consensus 383 ~v~iFpEGtRSR-tGkllppK~G~l~~a~~a~~~~~~~dv~IVPVsI-sYekv~E~~~y~~el~G~~K~kEsl~~il~~i 460 (818)
T PRK04974 383 SVEYFVEGGRSR-TGRLLQPKTGMLAMTLQAMLRGSRRPITLVPVYI-GYEHVMEVGTYAKELRGAPKEKESLFQVLRGI 460 (818)
T ss_pred EEEEEcCCCcCC-CCCCcchhhhHHHHHHHHhhcccCCCcEEEEEEE-eccchhhhHHHHHHhcCCCCcCcCHHHHHHHH
Confidence 456899998774 67888888 7888773 2224899977 9998877632 0 0
Q ss_pred --CCcCCCeEEEEEcCCcCCchhHHH
Q psy8442 60 --YLRRGKTLTFHVGDPIDLAPILTD 83 (130)
Q Consensus 60 --~PR~gkrVtV~vGePId~~~l~~~ 83 (130)
.-++| +|.|.||+||++++++..
T Consensus 461 ~~~~~~G-~v~V~FGePisl~~~~~~ 485 (818)
T PRK04974 461 RKLRNFG-QGYVNFGEPIPLNDYLNQ 485 (818)
T ss_pred hhcCCCc-eEEEEeCCCccHHHHhhh
Confidence 12568 999999999998876553
No 23
>PLN02833 glycerol acyltransferase family protein
Probab=97.24 E-value=0.00025 Score=60.69 Aligned_cols=88 Identities=9% Similarity=0.033 Sum_probs=60.5
Q ss_pred CCcccccCceeeecCCCcchheeehcccCCCCeeeeEEeeccCcc----CCCCC-C-------CCCcCCCeEEEEEcCCc
Q psy8442 8 EPSYYLRSGMETVLPNEPLYYLRSGMETVLPNEPSYYLRSGMETV----LPNEP-P-------YYLRRGKTLTFHVGDPI 75 (130)
Q Consensus 8 ~~~~~~pEG~V~~~~~~~lrfkRL~les~~pP~VvPi~~~Gme~V----~P~g~-~-------y~PR~gkrVtV~vGePI 75 (130)
.+-.-||||--+. .++++.||+=+.+++.| |+||++...... +..+. . .+..+...++|.|++|+
T Consensus 238 ~~llIFPEGTrs~-~~~l~~FK~Gaf~~g~p--I~PVaI~y~~~~~~~fW~s~~~s~~~~l~~ll~~~~~~v~V~~LpPi 314 (376)
T PLN02833 238 NPLLIFPEGTCVN-NEYTVMFKKGAFELGCT--VCPIAIKYNKIFVDAFWNSRKQSFTMHLLRLMTSWAVVCDVWYLEPQ 314 (376)
T ss_pred CEEEEEcCccccC-CCcccccchhhHhcCCe--EEEEEEEecCcccccccCCCCccHHHhHHHHhCCCceEEEEEECCCc
Confidence 3557899997663 67799999888899999 999999855321 21111 0 12233448999999999
Q ss_pred CCchhHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Q psy8442 76 DLAPILTDLRAANLSDREVRAALTQFIQDELYALK 110 (130)
Q Consensus 76 d~~~l~~~~~~~~~~~~e~Rr~ITD~Iq~~i~~L~ 110 (130)
+..+- +-++++++++++.|++.-
T Consensus 315 ~~~~~------------e~~~efA~rv~~~Ia~~l 337 (376)
T PLN02833 315 TLRPG------------ETPIEFAERVRDMIAKRA 337 (376)
T ss_pred CCCCC------------CCHHHHHHHHHHHHHHhc
Confidence 86411 116678888888887643
No 24
>cd07993 LPLAT_DHAPAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-phosphate O-acyltransferase 1) and similar proteins.
Probab=97.09 E-value=7e-05 Score=57.84 Aligned_cols=67 Identities=19% Similarity=0.148 Sum_probs=46.9
Q ss_pred CcccccCceeeecCCCcchhe----eehccc-------CCCCeeeeEEeeccCccCCCCCC-------------------
Q psy8442 9 PSYYLRSGMETVLPNEPLYYL----RSGMET-------VLPNEPSYYLRSGMETVLPNEPP------------------- 58 (130)
Q Consensus 9 ~~~~~pEG~V~~~~~~~lrfk----RL~les-------~~pP~VvPi~~~Gme~V~P~g~~------------------- 58 (130)
.-.-||||--+. .+.++.|| +++.++ +++ |+||++.= +.+ |.+..
T Consensus 103 ~l~iFPEGtrs~-~g~~~~~k~G~~~~a~~~~~~~~~~~v~--IvPV~i~Y-~~~-~~~~~~~~~~~g~~~~~~~~~~~~ 177 (205)
T cd07993 103 PLEFFIEGTRSR-TGKLLPPKLGLLSVVVEAYLKGSVPDVL--IVPVSISY-DRV-LEEELYAEELLGPPKPKESLSGLL 177 (205)
T ss_pred eEEEEcCCCCCC-CCCccchHHHHHHHHHHHHhhCCCCCeE--EEEeEEee-Ccc-cchHHHHHHHcCCCCCCccHHHHH
Confidence 445799998874 67889998 888888 778 99999962 221 11100
Q ss_pred ----CCCc-CCCeEEEEEcCCcCCchhH
Q psy8442 59 ----YYLR-RGKTLTFHVGDPIDLAPIL 81 (130)
Q Consensus 59 ----y~PR-~gkrVtV~vGePId~~~l~ 81 (130)
.+-+ .| +|.|.||+||++++++
T Consensus 178 ~~~~~l~~~~g-~v~v~~~~Pi~~~~~~ 204 (205)
T cd07993 178 GASKILRENFG-RIRVDFGEPISLREYL 204 (205)
T ss_pred HHHHHhhccCC-eEEEECCCCcCHHHhc
Confidence 1222 35 9999999999987653
No 25
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=96.99 E-value=0.0013 Score=58.23 Aligned_cols=89 Identities=9% Similarity=-0.026 Sum_probs=62.9
Q ss_pred CcccccCceeeecCCCcchheeehcccCCCCeeeeEEeeccCccCCCCCC----------CCCcCCCeEEEEEcCCcCCc
Q psy8442 9 PSYYLRSGMETVLPNEPLYYLRSGMETVLPNEPSYYLRSGMETVLPNEPP----------YYLRRGKTLTFHVGDPIDLA 78 (130)
Q Consensus 9 ~~~~~pEG~V~~~~~~~lrfkRL~les~~pP~VvPi~~~Gme~V~P~g~~----------y~PR~gkrVtV~vGePId~~ 78 (130)
.-.-||||-=+. .+.+++||.+..+...| ||||++.|..+++...+. |+-.+.--++|+|=+||..+
T Consensus 367 ~lvIFPEGTrs~-~~~l~~Fk~~fa~l~~p--IVPVAI~~~~~~f~~~t~~~~~~~d~~~~~~~p~~~y~V~fL~~l~~~ 443 (497)
T PLN02177 367 DLVICPEGTTCR-EPFLLRFSALFAELTDR--IVPVAINTKQSMFHGTTVRGYKLLDPYFVFMNPRPTYEITFLNQLPKE 443 (497)
T ss_pred CEEECcCcCCCC-CCCcchHHHHHHHHCCc--EEEEEEEcccccccccccccceecchhhhhcCCCceEEEEECCCCChh
Confidence 346799997664 68899999777777778 999999999999887643 12222334999999999976
Q ss_pred hhHHHHHhcCCChHHHHHHHHHHHHHHHHH
Q psy8442 79 PILTDLRAANLSDREVRAALTQFIQDELYA 108 (130)
Q Consensus 79 ~l~~~~~~~~~~~~e~Rr~ITD~Iq~~i~~ 108 (130)
.. +. .+.+. .++++.||+.|++
T Consensus 444 ~~---~~-~~~~~----~evAn~Vq~~i~~ 465 (497)
T PLN02177 444 LT---CK-GGKSP----IEVANYIQRVLAG 465 (497)
T ss_pred hc---cc-CCCCH----HHHHHHHHHHHHH
Confidence 41 11 12333 3578888887773
No 26
>cd07984 LPLAT_LABLAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lipid A biosynthesis lauroyl/myristoyl (LABLAT, HtrB) acyltransferases and similar proteins.
Probab=96.92 E-value=0.0031 Score=46.99 Aligned_cols=57 Identities=14% Similarity=0.025 Sum_probs=42.1
Q ss_pred CCcccccCceeeecCCCcch-------he----eehcccCCCCeeeeEEeeccCccCCCCCCCCCcCCCeEEEEEcCCcC
Q psy8442 8 EPSYYLRSGMETVLPNEPLY-------YL----RSGMETVLPNEPSYYLRSGMETVLPNEPPYYLRRGKTLTFHVGDPID 76 (130)
Q Consensus 8 ~~~~~~pEG~V~~~~~~~lr-------fk----RL~les~~pP~VvPi~~~Gme~V~P~g~~y~PR~gkrVtV~vGePId 76 (130)
+.-..||||..+...+.... |+ .|+..+++| |||+++.++. + + +++|.||+|++
T Consensus 91 ~~v~i~pD~~~~~~~~~~~~F~G~~~~~~~G~~~lA~~~~~p--ivp~~~~~~~-------~-----~-~~~i~~~~~i~ 155 (192)
T cd07984 91 EIVGILPDQDPGRKGGVFVPFFGRPAATPTGPARLALKTGAP--VVPAFAYRLP-------G-----G-GYRIEFEPPLE 155 (192)
T ss_pred CEEEEEeCCCCCCCCCEEeccCCCCccchHHHHHHHHHHCCc--EEEEEEEEcC-------C-----C-CEEEEEeCCCC
Confidence 44467899987753223334 44 899999999 9999998753 1 3 89999999999
Q ss_pred Cch
Q psy8442 77 LAP 79 (130)
Q Consensus 77 ~~~ 79 (130)
..+
T Consensus 156 ~~~ 158 (192)
T cd07984 156 NPP 158 (192)
T ss_pred CCC
Confidence 853
No 27
>PTZ00374 dihydroxyacetone phosphate acyltransferase; Provisional
Probab=96.55 E-value=0.0027 Score=60.58 Aligned_cols=70 Identities=16% Similarity=0.252 Sum_probs=50.8
Q ss_pred CcccccCceeeecCCCcchhe----eehccc---------CCCCeeeeEEeeccCccCCCC----------CC-------
Q psy8442 9 PSYYLRSGMETVLPNEPLYYL----RSGMET---------VLPNEPSYYLRSGMETVLPNE----------PP------- 58 (130)
Q Consensus 9 ~~~~~pEG~V~~~~~~~lrfk----RL~les---------~~pP~VvPi~~~Gme~V~P~g----------~~------- 58 (130)
+--+||||.=+ ..+.++..| .+++++ +.+ ||||++ +-|+|+=.. +.
T Consensus 711 sVeiFpEGTRS-RTGKLLpPK~GlLkmalda~l~g~~~v~dV~--IVPVSI-sYErVlE~elyakEl~G~kK~kEsl~~l 786 (1108)
T PTZ00374 711 PLEFFIEGTRS-RTGKTMAPKLGLLKFICDTFYEGQQELDDVL--IIPVSL-SYDELLETTLYAKEQLGVSKPKENPGNL 786 (1108)
T ss_pred eEEEecCcCcC-CCCCcccchhhHHHHHHHHHhhcccCCCCCE--EEEEEE-ehhhhhhHHHHHHHhcCCCCCCCCHHHH
Confidence 34479999755 357777777 777776 444 999997 788776543 00
Q ss_pred ------CCCcCCCeEEEEEcCCcCCchhHHH
Q psy8442 59 ------YYLRRGKTLTFHVGDPIDLAPILTD 83 (130)
Q Consensus 59 ------y~PR~gkrVtV~vGePId~~~l~~~ 83 (130)
+.=++| +|.|.||+||++.+++..
T Consensus 787 lk~ir~L~~~~G-rV~V~FGEPISLreyL~~ 816 (1108)
T PTZ00374 787 LRARSLLKRRHG-KIHVHIGEPVSLRSFKDH 816 (1108)
T ss_pred HHHHHHHhccCc-eEEEECCCCccHHHHHhh
Confidence 113477 999999999999998664
No 28
>PRK11915 glycerol-3-phosphate acyltransferase; Reviewed
Probab=95.95 E-value=0.013 Score=53.51 Aligned_cols=74 Identities=16% Similarity=0.016 Sum_probs=48.8
Q ss_pred CcccccCceeeecCCCcchhe----eehccc----C-CCCeeeeEEeeccCccCCCCC----------C-----------
Q psy8442 9 PSYYLRSGMETVLPNEPLYYL----RSGMET----V-LPNEPSYYLRSGMETVLPNEP----------P----------- 58 (130)
Q Consensus 9 ~~~~~pEG~V~~~~~~~lrfk----RL~les----~-~pP~VvPi~~~Gme~V~P~g~----------~----------- 58 (130)
+--+||||-=+ ..|.++.=| .+++++ . .+=.||||++ |-|+|+=... +
T Consensus 196 ~le~F~EG~RS-RtGkll~Pk~GlLs~vv~~~~~~~~~dV~iVPVsI-~YDrV~E~~~y~~El~G~~K~~Esl~~l~~~~ 273 (621)
T PRK11915 196 NLTWSIEGGRT-RTGKLRPPVFGILRYITDAVDEIDGPEVYLVPTSI-VYDQLHEVEAMTTEAYGAVKRPEDLRFLVRLA 273 (621)
T ss_pred cEEEEeCCCCC-CCCCCCCCchhhHHHHHHHHhcCCCCCeEEEEEEE-eecccccHHHHHHHhcCCCCCccHHHHHHHHH
Confidence 44589999877 366655433 333332 1 2223899998 8999875541 1
Q ss_pred --CCCcCCCeEEEEEcCCcCCchhHHHHH
Q psy8442 59 --YYLRRGKTLTFHVGDPIDLAPILTDLR 85 (130)
Q Consensus 59 --y~PR~gkrVtV~vGePId~~~l~~~~~ 85 (130)
..-+.| +|.|.||+||++.+++...+
T Consensus 274 ~~l~~~~G-~i~V~FgePisL~~~l~~~~ 301 (621)
T PRK11915 274 RQQGERLG-RAYLDFGEPLPLRKRLQELR 301 (621)
T ss_pred HHHhhcCc-eEEEECCCCccHHHHHhhhc
Confidence 112477 99999999999998876544
No 29
>PF03982 DAGAT: Diacylglycerol acyltransferase ; InterPro: IPR007130 The terminal step of triacylglycerol (TAG) formation is catalysed by the enzyme diacylglycerol acyltransferase (DAGAT) [, ].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=95.86 E-value=0.014 Score=48.55 Aligned_cols=70 Identities=20% Similarity=0.191 Sum_probs=47.3
Q ss_pred eehcccCCCCeeeeEEeeccCccCCC----------------------------CCC--------CCCcCCCeEEEEEcC
Q psy8442 30 RSGMETVLPNEPSYYLRSGMETVLPN----------------------------EPP--------YYLRRGKTLTFHVGD 73 (130)
Q Consensus 30 RL~les~~pP~VvPi~~~Gme~V~P~----------------------------g~~--------y~PR~gkrVtV~vGe 73 (130)
|+|+++|++ +||++.-|=+++.-. |+. ++|+.. .+++.||+
T Consensus 173 klAl~~Ga~--LVPv~~FGE~d~~~~~~~~~~~~~r~~q~~~~~~~g~~~~~f~Grg~f~~~~~gllP~r~-pi~~VVG~ 249 (297)
T PF03982_consen 173 KLALQHGAP--LVPVYSFGENDLYDQVQNPPGSWLRRFQRWLKKKFGFSLPLFWGRGIFPSYSFGLLPYRR-PITTVVGK 249 (297)
T ss_pred HhHHHcCCc--EEeEEEeCChhheeeccCCchhHHHHHHHHHHHHcCcceeeeecccccCCCcccccccCC-ceEEEeec
Confidence 999999999 999999998876432 110 145544 89999999
Q ss_pred CcCCchhHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Q psy8442 74 PIDLAPILTDLRAANLSDREVRAALTQFIQDELYAL 109 (130)
Q Consensus 74 PId~~~l~~~~~~~~~~~~e~Rr~ITD~Iq~~i~~L 109 (130)
||++... + + .+++...++=++-.++|.+|
T Consensus 250 PI~v~~~-~-----~-Pt~e~Vd~~H~~Y~~~L~~L 278 (297)
T PF03982_consen 250 PIPVPKI-E-----N-PTQEDVDKLHARYIEALREL 278 (297)
T ss_pred eecccCC-C-----C-cCHHHHHHHHHHHHHHHHHH
Confidence 9999743 1 1 23444555555555555555
No 30
>smart00563 PlsC Phosphate acyltransferases. Function in phospholipid biosynthesis and have either glycerolphosphate, 1-acylglycerolphosphate, or 2-acylglycerolphosphoethanolamine acyltransferase activities. Tafazzin, the product of the gene mutated in patients with Barth syndrome, is a member of this family.
Probab=95.11 E-value=0.013 Score=39.48 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=30.5
Q ss_pred CcccccCceeeecCCCcchhe----eehcccCCCCeeeeEEeecc
Q psy8442 9 PSYYLRSGMETVLPNEPLYYL----RSGMETVLPNEPSYYLRSGM 49 (130)
Q Consensus 9 ~~~~~pEG~V~~~~~~~lrfk----RL~les~~pP~VvPi~~~Gm 49 (130)
.-.-||||.... ....+.|+ +++.+++++ |+|+++.|+
T Consensus 77 ~~~ifPeG~~~~-~~~~~~~~~g~~~la~~~~~~--v~Pv~~~~~ 118 (118)
T smart00563 77 WLLIFPEGTRSR-PGKLLPFKKGAARLALEAGVP--IVPVAIRGT 118 (118)
T ss_pred EEEEeCCcccCC-CCCcCCCcccHHHHHHHcCCC--EEeEEEecC
Confidence 335699999875 34666776 999999999 999999874
No 31
>PF01553 Acyltransferase: Acyltransferase; InterPro: IPR002123 This family contains acyltransferases involved in phospholipid biosynthesis and other proteins of unknown function []. This domain is found in tafazzins, defects in which are the cause of Barth syndrome; a severe inherited disorder which is often fatal in childhood and is characterised by cardiac and skeletal abnormalities. Phospholipid/glycerol acyltransferase is not found in the viruses or the archaea and is under represented in the bacteria. Bacterial glycerol-phosphate acyltransferases are involved in membrane biogenesis since they use fatty acid chains to form the first membrane phospholipids [].; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1IUQ_A 1K30_A.
Probab=94.91 E-value=0.0049 Score=42.88 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=11.7
Q ss_pred CcccccCceeeecCCCcchhe----eehcccCCCCeeeeEEee
Q psy8442 9 PSYYLRSGMETVLPNEPLYYL----RSGMETVLPNEPSYYLRS 47 (130)
Q Consensus 9 ~~~~~pEG~V~~~~~~~lrfk----RL~les~~pP~VvPi~~~ 47 (130)
.-..||||.++. .++++.|+ +++.+++.+ ||||+++
T Consensus 93 ~i~ifPEG~~~~-~~~~~~~~~G~~~~a~~~~~~--ivPv~i~ 132 (132)
T PF01553_consen 93 SIVIFPEGTRSR-SGELLPFKKGAFHIALKAKVP--IVPVAIS 132 (132)
T ss_dssp -EEE-TT-S----B--B----HHHHHHHHHH------------
T ss_pred eeeecCCccCcC-CCccCCccHHHHHHHHHcCCc--cccccCC
Confidence 346799998885 56678887 999999999 9999874
No 32
>TIGR00530 AGP_acyltrn 1-acyl-sn-glycerol-3-phosphate acyltransferases. 1-acyl-sn-glycerol-3-phosphate acyltransferase is also called 1-AGP acyltransferase, lysophosphatidic acid acyltransferase, and LPA acyltransferase.
Probab=94.23 E-value=0.024 Score=39.29 Aligned_cols=37 Identities=11% Similarity=0.060 Sum_probs=30.8
Q ss_pred CCcccccCceeeecCCCcchhe----eehcccCCCCeeeeEEee
Q psy8442 8 EPSYYLRSGMETVLPNEPLYYL----RSGMETVLPNEPSYYLRS 47 (130)
Q Consensus 8 ~~~~~~pEG~V~~~~~~~lrfk----RL~les~~pP~VvPi~~~ 47 (130)
..-..||||.... .+..+.|+ +++.++++| |+|+.++
T Consensus 90 ~~v~ifPeG~~~~-~~~~~~f~~g~~~la~~~~~p--vvpv~~~ 130 (130)
T TIGR00530 90 RSIGVFPEGTRSR-GRDILPFKKGAFHIAIKAGVP--ILPVVLS 130 (130)
T ss_pred CEEEEeCCCCCCC-CCCCCCcchhHHHHHHHcCCC--EEeEEeC
Confidence 3456899999874 57788897 999999999 9999864
No 33
>PLN02588 glycerol-3-phosphate acyltransferase
Probab=92.39 E-value=0.27 Score=44.26 Aligned_cols=89 Identities=12% Similarity=-0.005 Sum_probs=58.6
Q ss_pred cccccCceeeecCCCcchheeehcccCCCCeeeeEEeeccCccCCCCC---------C--CCCcCCCeEEEEEcCCcCCc
Q psy8442 10 SYYLRSGMETVLPNEPLYYLRSGMETVLPNEPSYYLRSGMETVLPNEP---------P--YYLRRGKTLTFHVGDPIDLA 78 (130)
Q Consensus 10 ~~~~pEG~V~~~~~~~lrfkRL~les~~pP~VvPi~~~Gme~V~P~g~---------~--y~PR~gkrVtV~vGePId~~ 78 (130)
-.-||||--|. .+.++|||.++.+...+ |+||++.-..- |+.|. + |+-.+.-..+|+|=++++-+
T Consensus 395 lVIFPEGTRsr-~g~LlrFk~l~A~la~~--IVPVAI~~~~~-~f~gtt~~g~k~~D~~~fl~nP~p~y~V~fL~~v~~~ 470 (525)
T PLN02588 395 LVVCPEGTTCR-EPYLLRFSPLFSEVCDV--IVPVAIDSHVT-FFYGTTASGLKAFDPIFFLLNPFPSYTVQLLDPVSGS 470 (525)
T ss_pred EEEccCccccC-CCcccChhhhHHHhcCc--eeeEEEEEecc-ccceeecCCCcccceeEEEecCCceEEEEEcCcCCch
Confidence 44799999885 78899999888877777 89999854333 35551 1 22233446889999999952
Q ss_pred -hhHHHHHh--cCCChHHHHHHHHHHHHHHHHH
Q psy8442 79 -PILTDLRA--ANLSDREVRAALTQFIQDELYA 108 (130)
Q Consensus 79 -~l~~~~~~--~~~~~~e~Rr~ITD~Iq~~i~~ 108 (130)
+. ++.. .+.+. .+++++||..|.+
T Consensus 471 ~e~--~~~~p~~g~s~----~evAn~VQ~~iA~ 497 (525)
T PLN02588 471 SSS--TCQDPDNGKLK----FEVANHVQHEIGN 497 (525)
T ss_pred hhh--cccCcccCCCh----HHHHHHHHHHHHH
Confidence 22 2221 12343 3568888888864
No 34
>KOG0831|consensus
Probab=92.18 E-value=0.26 Score=42.09 Aligned_cols=73 Identities=18% Similarity=0.158 Sum_probs=50.2
Q ss_pred eehcccCCCCeeeeEEeeccCcc-----CCCCCC------------------------------CCCcCCCeEEEEEcCC
Q psy8442 30 RSGMETVLPNEPSYYLRSGMETV-----LPNEPP------------------------------YYLRRGKTLTFHVGDP 74 (130)
Q Consensus 30 RL~les~~pP~VvPi~~~Gme~V-----~P~g~~------------------------------y~PR~gkrVtV~vGeP 74 (130)
|+|+.+|+. +||++--|=+++ .|.+.. ++| ..+.+++.||+|
T Consensus 211 klAl~tGs~--LVP~~sFGE~di~~q~~np~~s~lr~~Q~~~k~~~gf~~~~f~grg~~~~~~gllP-~r~pi~~VVG~P 287 (334)
T KOG0831|consen 211 KLALQTGAS--LVPVFSFGENDVYKQVENPKGSRLRKFQEWFKKIFGFTPPIFYGRGFFQYTFGLLP-FRRPITTVVGEP 287 (334)
T ss_pred HHHHHhCCC--cCceeecccceeeeeecCCCcchhHHHHHHHHHhcCcccceEeccccccccccccc-ccCcceeEecCc
Confidence 999999999 999999994443 333322 123 235899999999
Q ss_pred cCCchhHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH
Q psy8442 75 IDLAPILTDLRAANLSDREVRAALTQFIQDELYALKAR 112 (130)
Q Consensus 75 Id~~~l~~~~~~~~~~~~e~Rr~ITD~Iq~~i~~L~~q 112 (130)
|++... .. .++|....+-+..++++++|=.|
T Consensus 288 i~v~k~---~~----Pt~e~id~~H~~y~~~L~~LF~~ 318 (334)
T KOG0831|consen 288 IPVPKT---EN----PTQEQIDKYHGLYIDALRKLFDE 318 (334)
T ss_pred cCCccC---cC----CCHHHHHHHHHHHHHHHHHHHHh
Confidence 999642 22 45565666667777887777444
No 35
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=91.48 E-value=0.33 Score=43.46 Aligned_cols=88 Identities=9% Similarity=-0.015 Sum_probs=56.6
Q ss_pred cccccCceeeecCCCcchheeehcccCCCCeeeeEEeeccCccCCC----C-----CCC-CCcCCCeEEEEEcCCcCCch
Q psy8442 10 SYYLRSGMETVLPNEPLYYLRSGMETVLPNEPSYYLRSGMETVLPN----E-----PPY-YLRRGKTLTFHVGDPIDLAP 79 (130)
Q Consensus 10 ~~~~pEG~V~~~~~~~lrfkRL~les~~pP~VvPi~~~Gme~V~P~----g-----~~y-~PR~gkrVtV~vGePId~~~ 79 (130)
-.-||||-=|. .+.++|||.++.|...| ||||++.--....-- | +-| +-.+.---+|+|=+++.-+.
T Consensus 355 lvIFPEGTrsr-eg~LlrFk~l~aela~p--VVPVAI~~~~~~f~gtta~g~k~~Dp~~f~mnP~p~y~v~fL~~~~~~~ 431 (498)
T PLN02499 355 LVVCPEGTTCR-EPFLLRFSALFAELTDR--IVPVAMNYRVGFFHATTARGWKGLDPIFFFMNPRPVYEVTFLNQLPVEA 431 (498)
T ss_pred EEEcCCCCCCC-CCcccccchhhhhhcCc--eEeEEEEeccceEEEEcCCCCchhhhhhheecCCceEEEEEcCCCChhh
Confidence 34699998885 57799999999999998 999987422211111 1 112 22333347899999998652
Q ss_pred hHHHHHhcCCChHHHHHHHHHHHHHHHHH
Q psy8442 80 ILTDLRAANLSDREVRAALTQFIQDELYA 108 (130)
Q Consensus 80 l~~~~~~~~~~~~e~Rr~ITD~Iq~~i~~ 108 (130)
.+. .+.+. .+++.+||..|.+
T Consensus 432 ---t~~-~g~s~----~evan~vQ~~la~ 452 (498)
T PLN02499 432 ---TCS-SGKSP----HDVANYVQRILAA 452 (498)
T ss_pred ---ccC-CCCCh----HHHHHHHHHHHHH
Confidence 222 23343 3578888888765
No 36
>PRK14014 putative acyltransferase; Provisional
Probab=88.10 E-value=2 Score=35.54 Aligned_cols=107 Identities=12% Similarity=-0.017 Sum_probs=65.7
Q ss_pred ccccCceeeecC---------CCcchhe----eehcccC--CCCeeeeEEeeccCccCCCCCCCCCcCCCeEEEEEcCCc
Q psy8442 11 YYLRSGMETVLP---------NEPLYYL----RSGMETV--LPNEPSYYLRSGMETVLPNEPPYYLRRGKTLTFHVGDPI 75 (130)
Q Consensus 11 ~~~pEG~V~~~~---------~~~lrfk----RL~les~--~pP~VvPi~~~Gme~V~P~g~~y~PR~gkrVtV~vGePI 75 (130)
.-||||-=.... +.+|.|| .+++++. .-+.|+|+-+.+.+...+...-...+++ +|+|.|= =+
T Consensus 178 ~IFPEGTR~t~~k~~~~~~~~~~lL~pk~ggf~~a~~~~~~~~~~I~dvti~y~~~~~~~~~~~~g~~~-~v~v~i~-~~ 255 (301)
T PRK14014 178 VNFVEGTRFTPEKHQQQQSPYQHLLKPKAGGIAFALNAMGEQFDGLLDVTIVYPDGRPSFWDLLSGRVK-KIVVHVR-LL 255 (301)
T ss_pred EEeccceecCcccccccCCCcccccCCCCccHHHHHHhhhccCCEEEEEEEEeCCCCCCHHHhhcCCcc-EEEEEEE-EE
Confidence 469999543111 2567777 8888874 2244999999987754332332223443 7776653 12
Q ss_pred CCchhHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy8442 76 DLAPILTDLRAANLSDREVRAALTQFIQDELYALKARTEDLHAAHLK 122 (130)
Q Consensus 76 d~~~l~~~~~~~~~~~~e~Rr~ITD~Iq~~i~~L~~q~e~lh~~~~~ 122 (130)
+.++.. .....++.+.|.++++-+.+.-++--...++++++..+
T Consensus 256 pi~~~~---~~~y~~d~~~~~~~~~Wl~~~w~~Kd~~l~~~~~~~~~ 299 (301)
T PRK14014 256 PIPEEL---IGDYFNDKEFRRRFQQWLNQLWQEKDQLIEQLLAQYNQ 299 (301)
T ss_pred Eccccc---ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 222321 11222556678889999998888888888888876543
No 37
>PRK08419 lipid A biosynthesis lauroyl acyltransferase; Reviewed
Probab=88.06 E-value=1.2 Score=36.14 Aligned_cols=35 Identities=9% Similarity=-0.218 Sum_probs=28.1
Q ss_pred eehcccCCCCeeeeEEeeccCccCCCCCCCCCcCCCeEEEEEcCCcCCch
Q psy8442 30 RSGMETVLPNEPSYYLRSGMETVLPNEPPYYLRRGKTLTFHVGDPIDLAP 79 (130)
Q Consensus 30 RL~les~~pP~VvPi~~~Gme~V~P~g~~y~PR~gkrVtV~vGePId~~~ 79 (130)
+|+..+++| |||+++...+ +.+.+|.|++||++++
T Consensus 217 ~LA~k~~ap--vvpv~~~~~~-------------~~~~~i~~~~~i~~~~ 251 (298)
T PRK08419 217 ILARRYNAL--IIPVFIFNDD-------------YSHFTITFFPPIRSKI 251 (298)
T ss_pred HHHHHHCCC--EEEEEEEECC-------------CCeEEEEEcCCccCCC
Confidence 899999999 9999996532 1267789999998753
No 38
>COG2121 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.41 E-value=5.9 Score=32.01 Aligned_cols=47 Identities=9% Similarity=-0.012 Sum_probs=34.2
Q ss_pred eehcccCCCCeeeeEEeeccCccCCCC--CCCCCcCCCeEEEEEcCCcCCc
Q psy8442 30 RSGMETVLPNEPSYYLRSGMETVLPNE--PPYYLRRGKTLTFHVGDPIDLA 78 (130)
Q Consensus 30 RL~les~~pP~VvPi~~~Gme~V~P~g--~~y~PR~gkrVtV~vGePId~~ 78 (130)
-|+--|++| |+|+...=-..+.=.. +-=+|-++-+++|.+||||.++
T Consensus 140 ~LA~~sg~p--i~pv~~~~sr~~~lKsWDk~~IP~PFgk~~i~~gePi~~~ 188 (214)
T COG2121 140 ALAQKSGVP--IIPVGVATSRCWRLKTWDKTIIPLPFGKIKIVLGEPIEVD 188 (214)
T ss_pred HhhHhcCCC--eEEEEEeeeeeeeecccccccccCccceeEEEecCceeec
Confidence 566779999 9999886544322221 2237888889999999999985
No 39
>PRK07920 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=66.90 E-value=28 Score=28.26 Aligned_cols=68 Identities=16% Similarity=0.044 Sum_probs=41.2
Q ss_pred eehcccCCCCeeeeEEeeccCccCCCCCCCCCcCCCeEEEEEcCCcCCchhHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Q psy8442 30 RSGMETVLPNEPSYYLRSGMETVLPNEPPYYLRRGKTLTFHVGDPIDLAPILTDLRAANLSDREVRAALTQFIQDELYAL 109 (130)
Q Consensus 30 RL~les~~pP~VvPi~~~Gme~V~P~g~~y~PR~gkrVtV~vGePId~~~l~~~~~~~~~~~~e~Rr~ITD~Iq~~i~~L 109 (130)
+|+..+++| |||+++.-.++ ..+|.|++|+++.+- . +..+.-.++++.+++.|++-
T Consensus 215 ~LA~~~~ap--Vvp~~~~r~~~--------------~y~v~~~~~~~~~~~----~----~~~~~t~~~~~~lE~~Ir~~ 270 (298)
T PRK07920 215 ALALETGAA--LLPVHLWFEGD--------------GWGFRVHPPLDVPSA----E----DVAAMTQALADAFAANIAAH 270 (298)
T ss_pred HHHHHHCCc--EEEEEEEEeCC--------------eEEEEEeCCCCCCch----h----HHHHHHHHHHHHHHHHHHhC
Confidence 899999999 99999975431 145888999986420 1 22233445555555555444
Q ss_pred HHHHHHHHHHhc
Q psy8442 110 KARTEDLHAAHL 121 (130)
Q Consensus 110 ~~q~e~lh~~~~ 121 (130)
=.|===.|..|+
T Consensus 271 PeQW~W~h~RWk 282 (298)
T PRK07920 271 PEDWHMLQPLWL 282 (298)
T ss_pred hHHHhHhHHHhc
Confidence 333222366663
No 40
>PLN02349 glycerol-3-phosphate acyltransferase
Probab=64.51 E-value=11 Score=33.42 Aligned_cols=74 Identities=19% Similarity=0.194 Sum_probs=52.7
Q ss_pred eehcccCCCCeeeeEEeeccCccCCCCCC--------CCCcCCCeEEEEEcCCcCCchhHHHHHhcCCChHHHHHHHHHH
Q psy8442 30 RSGMETVLPNEPSYYLRSGMETVLPNEPP--------YYLRRGKTLTFHVGDPIDLAPILTDLRAANLSDREVRAALTQF 101 (130)
Q Consensus 30 RL~les~~pP~VvPi~~~Gme~V~P~g~~--------y~PR~gkrVtV~vGePId~~~l~~~~~~~~~~~~e~Rr~ITD~ 101 (130)
+|+-.|++|=-+.|+++. +-++||+-.- ..-++. -|.+.||+-|+++++...+. +..+.|.+.|+.
T Consensus 330 ~l~~~s~~ptHfYPlAl~-~yDImPPP~~VEkeIGE~R~v~F~-gvGlsvg~EI~~~~~~~~~~----~~~e~r~~~t~~ 403 (426)
T PLN02349 330 RLTEKSKAPGHFYPLAML-SYDIMPPPPQVEKEIGERRLVGFT-GVGLSVGEEIDFSDITAACE----GGAEAREAFTQA 403 (426)
T ss_pred HHHHhcCCCccccchHHH-hCccCCCccccccccCceeeeeee-cceeeeccccchHhhhhhcC----ChHHHHHHHHHH
Confidence 666668899889999995 5568887521 133333 57799999999998855555 566778788877
Q ss_pred HHHHHHHH
Q psy8442 102 IQDELYAL 109 (130)
Q Consensus 102 Iq~~i~~L 109 (130)
+-+.+.++
T Consensus 404 ~~~~V~~~ 411 (426)
T PLN02349 404 AYASVVEQ 411 (426)
T ss_pred HHHHHHHH
Confidence 76665554
No 41
>KOG3730|consensus
Probab=59.25 E-value=15 Score=33.59 Aligned_cols=48 Identities=21% Similarity=0.295 Sum_probs=30.6
Q ss_pred cCCCeEEEEEcCCcCCchhHHHH-HhcC-------C--ChHHHHHHHHHHHHHHHHHHH
Q psy8442 62 RRGKTLTFHVGDPIDLAPILTDL-RAAN-------L--SDREVRAALTQFIQDELYALK 110 (130)
Q Consensus 62 R~gkrVtV~vGePId~~~l~~~~-~~~~-------~--~~~e~Rr~ITD~Iq~~i~~L~ 110 (130)
++| .+.+.|||||++.+++..- ...+ + ...+.-++...+|+..++.|.
T Consensus 316 ~fG-s~fl~FGePISvr~~fg~rm~R~~~~~v~q~~p~~q~e~~~~fv~ei~yk~~~l~ 373 (685)
T KOG3730|consen 316 RFG-SMFLDFGEPISVREFFGQRMQRAGVGGVLQKLPRQQVELVKQFVNEIIYKQQRLI 373 (685)
T ss_pred hcC-cEEEecCCCccHHHHhhhhhhhcccccccccCcHhHHHHHHHHHHHHHHHHHHHH
Confidence 577 8999999999998875432 1111 1 234455667777766655543
No 42
>PRK03355 glycerol-3-phosphate acyltransferase; Validated
Probab=55.29 E-value=38 Score=32.17 Aligned_cols=24 Identities=13% Similarity=0.299 Sum_probs=19.9
Q ss_pred CCeEEEEEcCCcCCchhHHHHHhc
Q psy8442 64 GKTLTFHVGDPIDLAPILTDLRAA 87 (130)
Q Consensus 64 gkrVtV~vGePId~~~l~~~~~~~ 87 (130)
..++.|..|||++++++...+.+.
T Consensus 122 p~r~~~~~gep~~l~~l~~~~~~~ 145 (783)
T PRK03355 122 PRRARVLAGEPAKVSELRQRWRDT 145 (783)
T ss_pred CcceEEEcCCCCcHHHHHHHhhhc
Confidence 348999999999999997777554
No 43
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=49.87 E-value=60 Score=24.56 Aligned_cols=69 Identities=17% Similarity=0.204 Sum_probs=38.1
Q ss_pred ccCccCCCCCC-CCC---cCCCeEEEEEcCCcCCc----hhHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8442 48 GMETVLPNEPP-YYL---RRGKTLTFHVGDPIDLA----PILTDLRAANLSDREVRAALTQFIQDELYALKARTEDLHAA 119 (130)
Q Consensus 48 Gme~V~P~g~~-y~P---R~gkrVtV~vGePId~~----~l~~~~~~~~~~~~e~Rr~ITD~Iq~~i~~L~~q~e~lh~~ 119 (130)
|.+.+.|.|+- |++ .-.++|.|.||-=+... +-++.+++ ..+-....-..++++|.+|..+.+.+.++
T Consensus 55 g~E~LVpvGag~fv~~kv~~~~kviV~iGsg~~ae~~~~eAie~l~k----~~~~l~~~~~~l~~~l~~l~~~~~~l~~~ 130 (145)
T COG1730 55 GKEVLVPVGAGLFVKAKVKDMDKVIVSIGSGYYAEKSADEAIEFLKK----RIEELEKAIEKLQQALAELAQRIEQLEQE 130 (145)
T ss_pred CceEEEEcCCCceEEEEeccCceEEEEcCCceeeeecHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677643 433 23358999999888753 33333331 22223334455566666666666666544
Q ss_pred h
Q psy8442 120 H 120 (130)
Q Consensus 120 ~ 120 (130)
.
T Consensus 131 ~ 131 (145)
T COG1730 131 A 131 (145)
T ss_pred H
Confidence 3
No 44
>PRK06553 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=44.97 E-value=43 Score=27.35 Aligned_cols=34 Identities=9% Similarity=0.115 Sum_probs=25.9
Q ss_pred eehcccCCCCeeeeEEeeccCccCCCCCCCCCcCCCeEEEEEcCCcCCc
Q psy8442 30 RSGMETVLPNEPSYYLRSGMETVLPNEPPYYLRRGKTLTFHVGDPIDLA 78 (130)
Q Consensus 30 RL~les~~pP~VvPi~~~Gme~V~P~g~~y~PR~gkrVtV~vGePId~~ 78 (130)
+|+..+++| |||++..=.+ . | +.+|.|.+|+++.
T Consensus 236 ~LA~~~~ap--Vvp~~~~R~~-----------~-g-~y~i~~~~~~~~~ 269 (308)
T PRK06553 236 KLARQYDCP--VHGARCIRLP-----------G-G-RFRLELTERVELP 269 (308)
T ss_pred HHHHHHCCC--EEEEEEEEcC-----------C-C-eEEEEEecCCCCC
Confidence 899999999 9999984222 1 2 4678888999874
No 45
>KOG3960|consensus
Probab=43.51 E-value=45 Score=27.97 Aligned_cols=91 Identities=19% Similarity=0.128 Sum_probs=53.9
Q ss_pred CeeeeEEeecc---CccCCCCCC-----CCCcCCCeEEEEEcCCcCCc------hhHHHHHh--cCCChHHHHHHHHHHH
Q psy8442 39 NEPSYYLRSGM---ETVLPNEPP-----YYLRRGKTLTFHVGDPIDLA------PILTDLRA--ANLSDREVRAALTQFI 102 (130)
Q Consensus 39 P~VvPi~~~Gm---e~V~P~g~~-----y~PR~gkrVtV~vGePId~~------~l~~~~~~--~~~~~~e~Rr~ITD~I 102 (130)
|...+..++|. ++.-|+... -.|-+++.=.=.|+.|.=.+ -++.+++. +.......||+.|-+=
T Consensus 47 p~y~~t~~t~s~~~~~~kpe~~~~~ps~v~p~~~~~Ede~v~ap~~~shh~~g~cl~wackackrks~svDRRKAATMRE 126 (284)
T KOG3960|consen 47 PLYPRTAGTGSLCSQDFKPEAHSHFPSAVHPAPGSDEDEHVRAPSVDSHHQAGQCLLWACKACKRKSTSVDRRKAATMRE 126 (284)
T ss_pred CCCccccccccccccccCccccccCccccccCCCCcccccccCCCCCcccCCcchHHHhhhhccccccchhHHHHHHHHH
Confidence 44555666665 344454431 23444444445555563311 12223322 2223455699999999
Q ss_pred HHHHHHHHHHHHHHHHHh-ccCCcCCCC
Q psy8442 103 QDELYALKARTEDLHAAH-LKEDARMPK 129 (130)
Q Consensus 103 q~~i~~L~~q~e~lh~~~-~~~~~~~~~ 129 (130)
+.+|.+.-.-.|.|.+.+ .++..|+||
T Consensus 127 RRRLkKVNEAFE~LKRrT~~NPNQRLPK 154 (284)
T KOG3960|consen 127 RRRLKKVNEAFETLKRRTSSNPNQRLPK 154 (284)
T ss_pred HHHHHHHHHHHHHHHhhcCCCccccccH
Confidence 999999888888888777 577888887
No 46
>KOG1618|consensus
Probab=41.64 E-value=22 Score=30.90 Aligned_cols=41 Identities=20% Similarity=0.104 Sum_probs=31.5
Q ss_pred CCcchhe---eehcc--------------cCCCCeeeeEEeeccCccCCCCCCCCCcCCC
Q psy8442 23 NEPLYYL---RSGME--------------TVLPNEPSYYLRSGMETVLPNEPPYYLRRGK 65 (130)
Q Consensus 23 ~~~lrfk---RL~le--------------s~~pP~VvPi~~~Gme~V~P~g~~y~PR~gk 65 (130)
+++.||- .|+++ ++.-| -|||+.+++|-+|++.-+ +||+|.
T Consensus 188 ~dPv~W~~dlQli~D~l~snG~~gt~~~a~~~~P-hipiy~sN~DLlW~~e~~-lpR~G~ 245 (389)
T KOG1618|consen 188 GDPVRWETDLQLIMDVLLSNGSPGTGRLATGPYP-HIPIYASNMDLLWMAEYK-LPRFGH 245 (389)
T ss_pred cCchhhhhhHHHHHHHHhcCCCCCcccccCCCCC-CCceEEecccccccccCC-Cccccc
Confidence 7778885 44443 33333 689999999999999998 999983
No 47
>PRK06628 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=41.63 E-value=73 Score=25.74 Aligned_cols=34 Identities=6% Similarity=-0.002 Sum_probs=25.2
Q ss_pred eehcccCCCCeeeeEEeeccCccCCCCCCCCCcCCCeEEEEEcCCcCCc
Q psy8442 30 RSGMETVLPNEPSYYLRSGMETVLPNEPPYYLRRGKTLTFHVGDPIDLA 78 (130)
Q Consensus 30 RL~les~~pP~VvPi~~~Gme~V~P~g~~y~PR~gkrVtV~vGePId~~ 78 (130)
+|+..+++| |||++..=.+ + ...++.|.+|++..
T Consensus 217 ~LA~~~~ap--vv~~~~~r~~-----~--------~~~~i~~~~~~~~~ 250 (290)
T PRK06628 217 KIALQYKYP--IIPCQIIRTK-----G--------SYFKVIVHPQLKFE 250 (290)
T ss_pred HHHHHHCCC--EEEEEEEECC-----C--------CeEEEEEcCCCCCC
Confidence 899999999 9999984221 1 24667888888754
No 48
>PF15482 CCER1: Coiled-coil domain-containing glutamate-rich protein family 1
Probab=38.88 E-value=41 Score=26.83 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8442 96 AALTQFIQDELYALKARTEDLHAAH 120 (130)
Q Consensus 96 r~ITD~Iq~~i~~L~~q~e~lh~~~ 120 (130)
+..|.+||.+++++-.|-|+|+.+.
T Consensus 182 RNTtQFlM~q~YqdMrqqeklerqq 206 (214)
T PF15482_consen 182 RNTTQFLMNQKYQDMRQQEKLERQQ 206 (214)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999997765
No 49
>COG2937 PlsB Glycerol-3-phosphate O-acyltransferase [Lipid metabolism]
Probab=37.63 E-value=46 Score=31.65 Aligned_cols=67 Identities=19% Similarity=0.112 Sum_probs=44.4
Q ss_pred cccCceeeecCCCcchhe--------eehcccCCCCe-eeeEEeeccCccCCCCC---------------C----CCC--
Q psy8442 12 YLRSGMETVLPNEPLYYL--------RSGMETVLPNE-PSYYLRSGMETVLPNEP---------------P----YYL-- 61 (130)
Q Consensus 12 ~~pEG~V~~~~~~~lrfk--------RL~les~~pP~-VvPi~~~Gme~V~P~g~---------------~----y~P-- 61 (130)
||=||-=+ ..|.+|-=| +-.++....|+ ++||+| |.|+|+=.+. . .+.
T Consensus 380 yfIEGGRS-RTGrlL~PKtGmlsmtlqA~Lrg~~rpI~lvPvyI-gYe~v~Ev~tYa~ElrGa~K~kE~~~~l~r~i~aq 457 (810)
T COG2937 380 YFIEGGRS-RTGRLLPPKTGMLSMTLQAMLRGRTRPILLVPVYI-GYEHVHEVGTYAKELRGATKEKESLRWLLRVIKAQ 457 (810)
T ss_pred EEeecCcc-ccCCcCCCccchHHHHHHHHhcCCCCCeEEEeeEe-ehhhHhhHHHHHHHhcCCcCCcccHHHHHHHHHHH
Confidence 55565444 245555434 44456555554 679998 9999985541 1 233
Q ss_pred --c-CCCeEEEEEcCCcCCchhH
Q psy8442 62 --R-RGKTLTFHVGDPIDLAPIL 81 (130)
Q Consensus 62 --R-~gkrVtV~vGePId~~~l~ 81 (130)
| +| ++-|.|||||.++.++
T Consensus 458 k~Rn~G-q~yVnFGEPi~L~qyL 479 (810)
T COG2937 458 KLRNLG-QGYVNFGEPIPLRQYL 479 (810)
T ss_pred hhhhcC-cEEEeCCCCccHHHHh
Confidence 2 77 8999999999998887
No 50
>PRK05646 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=35.00 E-value=1.5e+02 Score=24.19 Aligned_cols=71 Identities=8% Similarity=0.057 Sum_probs=45.0
Q ss_pred eehcccCCCCeeeeEEeeccCccCCCCCCCCCcCCCeEEEEEcCCcCCchhHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Q psy8442 30 RSGMETVLPNEPSYYLRSGMETVLPNEPPYYLRRGKTLTFHVGDPIDLAPILTDLRAANLSDREVRAALTQFIQDELYAL 109 (130)
Q Consensus 30 RL~les~~pP~VvPi~~~Gme~V~P~g~~y~PR~gkrVtV~vGePId~~~l~~~~~~~~~~~~e~Rr~ITD~Iq~~i~~L 109 (130)
+|+..+++| |||++..-.+ . |++.+|.|.+|++...- . +..+.-..+++.+++.|++-
T Consensus 227 ~LA~~~~ap--vvp~~~~r~~----~--------g~~~~i~~~~~~~~~~~----~----~~~~~~~~~~~~lE~~Ir~~ 284 (310)
T PRK05646 227 KFARLGRAR--VIPFTQKRLA----D--------GSGYRLVIHPPLEDFPG----E----SEEADCLRINQWVERVVREC 284 (310)
T ss_pred HHHHhhCCc--EEEEEEEEeC----C--------CCeEEEEEeCCCcCCCC----C----CHHHHHHHHHHHHHHHHHcC
Confidence 999999999 9999985332 1 23577888888874210 1 22223357777777777665
Q ss_pred HHHHHHHHHHhcc
Q psy8442 110 KARTEDLHAAHLK 122 (130)
Q Consensus 110 ~~q~e~lh~~~~~ 122 (130)
=+|===.|..|+.
T Consensus 285 P~QW~W~h~Rwk~ 297 (310)
T PRK05646 285 PEQYLWAHRRFKS 297 (310)
T ss_pred cHHHHHHHHhcCC
Confidence 4444444777754
No 51
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=34.98 E-value=61 Score=21.45 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCC
Q psy8442 99 TQFIQDELYALKARTEDLHAAHLKED 124 (130)
Q Consensus 99 TD~Iq~~i~~L~~q~e~lh~~~~~~~ 124 (130)
.++|.++|.-|..+.+++.++...-+
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~kK~ 52 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAKKK 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45666777777777777777665443
No 52
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=32.91 E-value=1.5e+02 Score=20.52 Aligned_cols=15 Identities=7% Similarity=0.237 Sum_probs=12.1
Q ss_pred CCeEEEEEcCCcCCc
Q psy8442 64 GKTLTFHVGDPIDLA 78 (130)
Q Consensus 64 gkrVtV~vGePId~~ 78 (130)
..+|.|.||..+.++
T Consensus 68 ~~~v~v~iG~~~~ve 82 (129)
T cd00890 68 DDKVLVDLGTGVYVE 82 (129)
T ss_pred CCEEEEEecCCEEEE
Confidence 458999999888764
No 53
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=29.57 E-value=1.4e+02 Score=28.17 Aligned_cols=34 Identities=35% Similarity=0.418 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCCC
Q psy8442 91 DREVRAALTQFIQDELYALKARTEDLHAAHLKEDARMPK 129 (130)
Q Consensus 91 ~~e~Rr~ITD~Iq~~i~~L~~q~e~lh~~~~~~~~~~~~ 129 (130)
+.+..+..||.|-.+..+++.-+|..-. -||||+
T Consensus 522 Drevfd~~tdTIirQV~dI~rMVdeF~a-----fARmP~ 555 (712)
T COG5000 522 DREVFDRCTDTIIRQVEDIKRMVDEFRA-----FARMPA 555 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhcCCC
Confidence 4566677888888888888888887643 467765
No 54
>TIGR03703 plsB glycerol-3-phosphate O-acyltransferase. Members of this protein family are PlsB, glycerol-3-phosphate O-acyltransferase, present in E. coli and numerous related species. In many bacteria, PlsB is not found, and appears to be replaced by a two enzyme system for 1-acyl-glycerol-3-phosphate biosynthesis, the PlsX/Y system.
Probab=29.13 E-value=1e+02 Score=29.38 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=19.6
Q ss_pred CCcCCCeEEEEEcCCcCCchhHHHH
Q psy8442 60 YLRRGKTLTFHVGDPIDLAPILTDL 84 (130)
Q Consensus 60 ~PR~gkrVtV~vGePId~~~l~~~~ 84 (130)
+-+.|.+..|.||+|++++.+....
T Consensus 150 ~~~~gr~~~v~~~~p~sl~~~~~~~ 174 (799)
T TIGR03703 150 VLFLGRDNFVRFSPPVSLRYMADEH 174 (799)
T ss_pred eeEcCcccEEEecCCccHHHHHhhc
Confidence 3456779999999999998775443
No 55
>PRK06946 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=28.66 E-value=1.8e+02 Score=23.48 Aligned_cols=71 Identities=11% Similarity=0.112 Sum_probs=42.6
Q ss_pred eehcccCCCCeeeeEEeeccCccCCCCCCCCCcCCCeEEEEEcCCcCCchhHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Q psy8442 30 RSGMETVLPNEPSYYLRSGMETVLPNEPPYYLRRGKTLTFHVGDPIDLAPILTDLRAANLSDREVRAALTQFIQDELYAL 109 (130)
Q Consensus 30 RL~les~~pP~VvPi~~~Gme~V~P~g~~y~PR~gkrVtV~vGePId~~~l~~~~~~~~~~~~e~Rr~ITD~Iq~~i~~L 109 (130)
+|+..+++| |||++..=.+ .+ +..++.|.+|++...- . +..+.-.++++.+++.|++-
T Consensus 214 ~LA~~~~a~--vvp~~~~r~~----~~--------~~~~~~~~~~~~~~~~----~----~~~~~t~~~n~~lE~~Ir~~ 271 (293)
T PRK06946 214 RLARTGGAQ--VVPFITEVLP----DY--------KGYRLRVFKPWENYPT----G----DDDLDARRMNAFLEEQIRLM 271 (293)
T ss_pred HHHHhcCCe--EEEEEEEEeC----CC--------CeEEEEEeCCCcCCCC----C----CHHHHHHHHHHHHHHHHHcC
Confidence 899999999 9999874322 22 2456777888875210 1 22333456677776666654
Q ss_pred HHHHHHHHHHhcc
Q psy8442 110 KARTEDLHAAHLK 122 (130)
Q Consensus 110 ~~q~e~lh~~~~~ 122 (130)
=+|===.|..|+.
T Consensus 272 PeQw~W~HrRwK~ 284 (293)
T PRK06946 272 PEQYYWVHKRFKT 284 (293)
T ss_pred cHhHHhHHhhcCC
Confidence 3333333777653
No 56
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=27.40 E-value=1.7e+02 Score=23.35 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=27.8
Q ss_pred eehcccCCCCeeeeEEeeccCccCCCCCCCCCcCCCeEEEEEcCCcCCch
Q psy8442 30 RSGMETVLPNEPSYYLRSGMETVLPNEPPYYLRRGKTLTFHVGDPIDLAP 79 (130)
Q Consensus 30 RL~les~~pP~VvPi~~~Gme~V~P~g~~y~PR~gkrVtV~vGePId~~~ 79 (130)
+|+..+++| |||++..=.++- .+.++.|-.|++++.
T Consensus 225 ~lA~~~~ap--vvp~~~~r~~~~------------~~~~~~i~~~~~~~~ 260 (295)
T PF03279_consen 225 RLARKTGAP--VVPVFAYREPDG------------SHYRIEIEPPLDFPS 260 (295)
T ss_pred HHHHHhCCc--EEEEEEEEeCCC------------CEEEEEEeecccCCc
Confidence 999999999 999998543311 367788888988764
No 57
>PF11454 DUF3016: Protein of unknown function (DUF3016); InterPro: IPR021557 This is a bacterial family of uncharacterised proteins.
Probab=26.97 E-value=90 Score=23.54 Aligned_cols=42 Identities=17% Similarity=0.142 Sum_probs=27.7
Q ss_pred eEEEEEcCCcCCchhHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Q psy8442 66 TLTFHVGDPIDLAPILTDLRAANLSDREVRAALTQFIQDELYALKA 111 (130)
Q Consensus 66 rVtV~vGePId~~~l~~~~~~~~~~~~e~Rr~ITD~Iq~~i~~L~~ 111 (130)
.|+|.+-+|=+|.|+...- .....-++.+.+.+.+.|++|..
T Consensus 3 ~V~V~w~dP~~ftD~~~s~----~~~~~~~~~~~~~L~~~~~~la~ 44 (141)
T PF11454_consen 3 EVKVTWQDPEKFTDIRPSN----GSQSRYRERVFAQLTKHFQKLAA 44 (141)
T ss_pred eeEEEecCcccccccccCC----CcccccHHHHHHHHHHHHHHHHH
Confidence 7999999999998873211 12333456666677777666643
No 58
>PRK08905 lipid A biosynthesis lauroyl acyltransferase; Validated
Probab=25.81 E-value=1.7e+02 Score=23.55 Aligned_cols=69 Identities=10% Similarity=0.012 Sum_probs=39.0
Q ss_pred eehcccCCCCeeeeEEeeccCccCCCCCCCCCcCCCeEEEEEcCCcCCchhHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Q psy8442 30 RSGMETVLPNEPSYYLRSGMETVLPNEPPYYLRRGKTLTFHVGDPIDLAPILTDLRAANLSDREVRAALTQFIQDELYAL 109 (130)
Q Consensus 30 RL~les~~pP~VvPi~~~Gme~V~P~g~~y~PR~gkrVtV~vGePId~~~l~~~~~~~~~~~~e~Rr~ITD~Iq~~i~~L 109 (130)
+|+..+++| |+|+++.=.+ .+ ++.++.|.+|++..+ . +..+.-..+++.+++.|++-
T Consensus 205 ~lA~~~~ap--vvp~~~~R~~----~~--------~~y~~~~~~~~~~~~-----~----~~~~~t~~~~~~lE~~Ir~~ 261 (289)
T PRK08905 205 RLAEVTGVP--VIFVAGERLP----RG--------RGYRLHLRPVQEPLP-----G----DKAADAAVINAEIERLIRRF 261 (289)
T ss_pred HHHHhhCCc--EEEEEEEEcC----CC--------CcEEEEEecCCCCCC-----C----CHHHHHHHHHHHHHHHHHcC
Confidence 999999999 9999974222 12 245677777776421 1 22333455666666555543
Q ss_pred HHHHHHHHHHhc
Q psy8442 110 KARTEDLHAAHL 121 (130)
Q Consensus 110 ~~q~e~lh~~~~ 121 (130)
=.|===.|..|+
T Consensus 262 PeQW~W~hrRwK 273 (289)
T PRK08905 262 PTQYLWGYNRYK 273 (289)
T ss_pred cHHhhhhhccCC
Confidence 222222255553
No 59
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=25.52 E-value=71 Score=25.93 Aligned_cols=22 Identities=9% Similarity=0.078 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy8442 99 TQFIQDELYALKARTEDLHAAH 120 (130)
Q Consensus 99 TD~Iq~~i~~L~~q~e~lh~~~ 120 (130)
-+.++.++.+|+||+|.+-.+.
T Consensus 63 l~~lq~ev~~LrG~~E~~~~~l 84 (263)
T PRK10803 63 LSDNQSDIDSLRGQIQENQYQL 84 (263)
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 3667888999999998874443
No 60
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=25.42 E-value=1.9e+02 Score=20.73 Aligned_cols=71 Identities=15% Similarity=0.185 Sum_probs=34.0
Q ss_pred ccCccCCCCCC-CC----CcCCCeEEEEEcCCcCCchhHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8442 48 GMETVLPNEPP-YY----LRRGKTLTFHVGDPIDLAPILTDLRAANLSDREVRAALTQFIQDELYALKARTEDLHAA 119 (130)
Q Consensus 48 Gme~V~P~g~~-y~----PR~gkrVtV~vGePId~~~l~~~~~~~~~~~~e~Rr~ITD~Iq~~i~~L~~q~e~lh~~ 119 (130)
|.+-..|.|.. |+ +.. .+|.|.+|.-+.++.-+....+--....+....--+.+...+..++.+.+.+...
T Consensus 55 ~~e~lvplg~~~yv~~~v~~~-~kV~v~lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~ 130 (140)
T PRK03947 55 GKETLVPIGAGSFVKAKVKDK-DKVIVSLGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQE 130 (140)
T ss_pred CCeEEEEcCCCcEEEEEecCC-CeEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555533 22 333 4999999999886522222110000112222333445555555555555555443
No 61
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=25.36 E-value=1.5e+02 Score=22.94 Aligned_cols=47 Identities=17% Similarity=0.357 Sum_probs=29.9
Q ss_pred EEcCCcCCchhHHHHHhcCCChHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Q psy8442 70 HVGDPIDLAPILTDLRAANLSDREVRAAL----TQFIQDELYALKARTEDLHAAH 120 (130)
Q Consensus 70 ~vGePId~~~l~~~~~~~~~~~~e~Rr~I----TD~Iq~~i~~L~~q~e~lh~~~ 120 (130)
..|+|.|+-++-+... .++...++= -+.|.+.|..|..|++++-++.
T Consensus 25 ~~~~~~dlv~la~~iq----~Ad~~~~~~t~~kL~~I~eQi~~Lq~QA~~ile~~ 75 (159)
T PF10504_consen 25 RLGDPFDLVDLAQQIQ----KADSAMRANTCNKLEVIAEQIRFLQEQARKILEEA 75 (159)
T ss_pred ccCCHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578988877755554 222222221 2378889999999998885543
No 62
>PRK08706 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=25.11 E-value=2.1e+02 Score=22.95 Aligned_cols=70 Identities=14% Similarity=0.077 Sum_probs=42.6
Q ss_pred eehcccCCCCeeeeEEeeccCccCCCCCCCCCcCCCeEEEEEcCCcCCchhHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Q psy8442 30 RSGMETVLPNEPSYYLRSGMETVLPNEPPYYLRRGKTLTFHVGDPIDLAPILTDLRAANLSDREVRAALTQFIQDELYAL 109 (130)
Q Consensus 30 RL~les~~pP~VvPi~~~Gme~V~P~g~~y~PR~gkrVtV~vGePId~~~l~~~~~~~~~~~~e~Rr~ITD~Iq~~i~~L 109 (130)
+|+..+++| |||++..=.+ . + +.++.|.+|++... ..+..+.-..+++.+++.|.+-
T Consensus 211 ~LA~~~~ap--vvp~~~~R~~----~--------~-~~~i~i~~~~~~~~--------~~~~~~~t~~~~~~lE~~Ir~~ 267 (289)
T PRK08706 211 RIAALANAK--VIPAIPVREA----D--------N-TVTLHFYPAWDSFP--------SEDAQADAQRMNRFIEERVREH 267 (289)
T ss_pred HHHHhcCCe--EEEEEEEEcC----C--------C-cEEEEEecCCCCCC--------CCCHHHHHHHHHHHHHHHHHcC
Confidence 999999999 9999985332 1 2 45667778876421 1133344556677776666654
Q ss_pred HHHHHHHHHHhcc
Q psy8442 110 KARTEDLHAAHLK 122 (130)
Q Consensus 110 ~~q~e~lh~~~~~ 122 (130)
=.|===.|..|..
T Consensus 268 P~QW~W~h~Rwk~ 280 (289)
T PRK08706 268 PEQYFWLHKRFKT 280 (289)
T ss_pred cHHHHHHHHhccc
Confidence 3333333777754
No 63
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=23.99 E-value=2e+02 Score=22.05 Aligned_cols=28 Identities=18% Similarity=0.084 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy8442 95 RAALTQFIQDELYALKARTEDLHAAHLK 122 (130)
Q Consensus 95 Rr~ITD~Iq~~i~~L~~q~e~lh~~~~~ 122 (130)
.+.++.+||..+-++-.|.|+++.-.+=
T Consensus 64 lr~va~rvQ~vlgd~At~gERl~allsW 91 (156)
T PF08372_consen 64 LRSVAGRVQNVLGDVATQGERLQALLSW 91 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4889999999999999999999886543
No 64
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=23.94 E-value=2.2e+02 Score=23.93 Aligned_cols=30 Identities=20% Similarity=0.422 Sum_probs=18.2
Q ss_pred cCccCCC--CCCCCC-cCCCeEE--EEEcCCcCCc
Q psy8442 49 METVLPN--EPPYYL-RRGKTLT--FHVGDPIDLA 78 (130)
Q Consensus 49 me~V~P~--g~~y~P-R~gkrVt--V~vGePId~~ 78 (130)
||.++.. .+.|+| ..|..+. |.-||-+||+
T Consensus 93 TD~fldrPptP~fvP~ktG~D~~TQI~~gdLFDFd 127 (291)
T PF06098_consen 93 TDAFLDRPPTPLFVPAKTGIDVETQIEEGDLFDFD 127 (291)
T ss_pred cchhccCCCCCCCCCCCCCCCcceeeccccccchH
Confidence 4444433 344777 5665444 7778888886
No 65
>PHA00743 helix-turn-helix protein
Probab=23.23 E-value=1.5e+02 Score=18.77 Aligned_cols=20 Identities=45% Similarity=0.644 Sum_probs=14.1
Q ss_pred ChHHHHHH--HHHHHHHHHHHH
Q psy8442 90 SDREVRAA--LTQFIQDELYAL 109 (130)
Q Consensus 90 ~~~e~Rr~--ITD~Iq~~i~~L 109 (130)
+...+-|| +|++||.++++|
T Consensus 28 ~k~kvekAl~Ls~~I~aeLy~~ 49 (51)
T PHA00743 28 DKEKIEKAIFLSQKIQAELYQL 49 (51)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455 599999999976
No 66
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=21.63 E-value=2e+02 Score=23.19 Aligned_cols=30 Identities=27% Similarity=0.337 Sum_probs=25.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8442 90 SDREVRAALTQFIQDELYALKARTEDLHAA 119 (130)
Q Consensus 90 ~~~e~Rr~ITD~Iq~~i~~L~~q~e~lh~~ 119 (130)
++...++..+.++++++..|+.+++.+-.+
T Consensus 74 ~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 74 SERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566778899999999999999999776
No 67
>COG4929 Uncharacterized membrane-anchored protein [Function unknown]
Probab=21.51 E-value=34 Score=27.22 Aligned_cols=12 Identities=25% Similarity=0.509 Sum_probs=9.5
Q ss_pred CCcccccCceee
Q psy8442 8 EPSYYLRSGMET 19 (130)
Q Consensus 8 ~~~~~~pEG~V~ 19 (130)
--||+||||+=|
T Consensus 142 ~esYfvpEG~g~ 153 (190)
T COG4929 142 IESYFVPEGQGN 153 (190)
T ss_pred cceeeccCCCCc
Confidence 458999999844
No 68
>TIGR02207 lipid_A_htrB lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase. This model represents a narrow clade of acyltransferases, nearly all of which transfer a lauroyl group to KDO2-lipid IV-A, a lipid A precursor; these proteins are termed lipid A biosynthesis lauroyl acyltransferase, HtrB. An exception is a closely related paralog of E. coli HtrB, LpxP, which acts in cold shock conditions by transferring a palmitoleoyl rather than lauroyl group to the lipid A precursor. Members of this family are homologous to the family of acyltransferases responsible for the next step in lipid A biosynthesis.
Probab=21.37 E-value=3.1e+02 Score=22.06 Aligned_cols=71 Identities=11% Similarity=0.110 Sum_probs=40.9
Q ss_pred eehcccCCCCeeeeEEeeccCccCCCCCCCCCcCCCeEEEEEcCCcCCchhHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Q psy8442 30 RSGMETVLPNEPSYYLRSGMETVLPNEPPYYLRRGKTLTFHVGDPIDLAPILTDLRAANLSDREVRAALTQFIQDELYAL 109 (130)
Q Consensus 30 RL~les~~pP~VvPi~~~Gme~V~P~g~~y~PR~gkrVtV~vGePId~~~l~~~~~~~~~~~~e~Rr~ITD~Iq~~i~~L 109 (130)
+|+..+++| |||++..=.+ . |++.+|.|.+|++... . .+..+.-.++++.+++.|.+=
T Consensus 223 ~LA~~~~ap--vip~~~~r~~----~--------~~~~~i~~~~~~~~~~---~-----~~~~~~t~~~~~~lE~~Ir~~ 280 (303)
T TIGR02207 223 ILARLSKCA--VVPFTPRRNE----D--------GSGYRLKIDPPLDDFP---G-----DDEIAAAARMNKIVEKMIMRA 280 (303)
T ss_pred HHHHHhCCe--EEEEEEEEeC----C--------CCeEEEEEeCCCCCCC---C-----CCHHHHHHHHHHHHHHHHHcC
Confidence 899999999 9999985332 1 1257788888886511 0 122333445555665555443
Q ss_pred HHHHHHHHHHhcc
Q psy8442 110 KARTEDLHAAHLK 122 (130)
Q Consensus 110 ~~q~e~lh~~~~~ 122 (130)
=+|===.|..|+.
T Consensus 281 P~QW~W~h~Rwk~ 293 (303)
T TIGR02207 281 PEQYMWLHRRFKT 293 (303)
T ss_pred cHHHHHHHHhccc
Confidence 3332223666653
No 69
>PF14728 PHTB1_C: PTHB1 C-terminus
Probab=21.32 E-value=3.8e+02 Score=23.14 Aligned_cols=20 Identities=10% Similarity=0.272 Sum_probs=17.0
Q ss_pred eEEEEEcCCcCCchhHHHHH
Q psy8442 66 TLTFHVGDPIDLAPILTDLR 85 (130)
Q Consensus 66 rVtV~vGePId~~~l~~~~~ 85 (130)
++.+.|++||.+.++++...
T Consensus 188 ~~~~~~~~~lPl~~~~~~id 207 (377)
T PF14728_consen 188 RFKISFSGPLPLQEYFEIID 207 (377)
T ss_pred ceEEecCCCCcHHHHHHHHH
Confidence 47899999999998887765
No 70
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=21.04 E-value=1.8e+02 Score=19.46 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8442 94 VRAALTQFIQDELYALKARTEDLHA 118 (130)
Q Consensus 94 ~Rr~ITD~Iq~~i~~L~~q~e~lh~ 118 (130)
.-+++..+.++.+.+|..++..|.+
T Consensus 54 ~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 54 AQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566677777777777777776654
No 71
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=20.94 E-value=2.4e+02 Score=19.80 Aligned_cols=71 Identities=20% Similarity=0.161 Sum_probs=32.8
Q ss_pred ccCccCCCCCC-CCCc---CCCeEEEEEcCCcCCchhHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8442 48 GMETVLPNEPP-YYLR---RGKTLTFHVGDPIDLAPILTDLRAANLSDREVRAALTQFIQDELYALKARTEDLHA 118 (130)
Q Consensus 48 Gme~V~P~g~~-y~PR---~gkrVtV~vGePId~~~l~~~~~~~~~~~~e~Rr~ITD~Iq~~i~~L~~q~e~lh~ 118 (130)
|.+-..|.|.. |++. -.++|.|.+|.=..++.=+....+--....+....--+.+.+.+.+++.+.+.+..
T Consensus 48 ~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~ 122 (129)
T cd00584 48 GKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYVEKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEA 122 (129)
T ss_pred CCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555533 3331 22599999998777642111111000011222233345555555555555555543
No 72
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=20.47 E-value=3.1e+02 Score=19.13 Aligned_cols=56 Identities=13% Similarity=0.080 Sum_probs=28.6
Q ss_pred CeEEEEEcCCcCCchhHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8442 65 KTLTFHVGDPIDLAPILTDLRAANLSDREVRAALTQFIQDELYALKARTEDLHAAH 120 (130)
Q Consensus 65 krVtV~vGePId~~~l~~~~~~~~~~~~e~Rr~ITD~Iq~~i~~L~~q~e~lh~~~ 120 (130)
++|.|.+|.=+.++.=++...+--....+....--+.+.+.+..++.+.+.+....
T Consensus 68 ~~v~v~iG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l 123 (126)
T TIGR00293 68 DKVLVSIGSGYYVEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEA 123 (126)
T ss_pred CEEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 49999999888765221221100001111223334555666666666666665543
No 73
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=20.40 E-value=1.2e+02 Score=27.53 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHhccCC
Q psy8442 104 DELYALKARTEDLHAAHLKED 124 (130)
Q Consensus 104 ~~i~~L~~q~e~lh~~~~~~~ 124 (130)
++|.+|+.|+++|.+|...-.
T Consensus 31 qkie~L~kql~~Lk~q~~~l~ 51 (489)
T PF11853_consen 31 QKIEALKKQLEELKAQQDDLN 51 (489)
T ss_pred HHHHHHHHHHHHHHHhhcccc
Confidence 388888888888888765433
No 74
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=20.36 E-value=2.5e+02 Score=19.20 Aligned_cols=18 Identities=6% Similarity=0.038 Sum_probs=12.5
Q ss_pred CCcCCCeEEEEEcCCcCCc
Q psy8442 60 YLRRGKTLTFHVGDPIDLA 78 (130)
Q Consensus 60 ~PR~gkrVtV~vGePId~~ 78 (130)
++... +|.|.+|.=+.++
T Consensus 55 i~~~~-~vlV~lG~~~~vE 72 (120)
T PF02996_consen 55 IPDTD-KVLVSLGAGYYVE 72 (120)
T ss_dssp -SSTT-EEEEEEETTEEEE
T ss_pred eCCCC-EEEEEeeCCeEEE
Confidence 34445 9999999776654
No 75
>PRK06860 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=20.25 E-value=3e+02 Score=22.37 Aligned_cols=71 Identities=11% Similarity=0.047 Sum_probs=42.3
Q ss_pred eehcccCCCCeeeeEEeeccCccCCCCCCCCCcCCCeEEEEEcCCcCCchhHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Q psy8442 30 RSGMETVLPNEPSYYLRSGMETVLPNEPPYYLRRGKTLTFHVGDPIDLAPILTDLRAANLSDREVRAALTQFIQDELYAL 109 (130)
Q Consensus 30 RL~les~~pP~VvPi~~~Gme~V~P~g~~y~PR~gkrVtV~vGePId~~~l~~~~~~~~~~~~e~Rr~ITD~Iq~~i~~L 109 (130)
+|+..+++| |||++..=.+ . |++.+|.|.+|++... . .+..+.-..+++.+++.|.+-
T Consensus 229 ~LA~~~~ap--vvp~~~~R~~----~--------~~~~~i~~~~~~~~~~---~-----~d~~~~t~~~n~~lE~~Ir~~ 286 (309)
T PRK06860 229 MLARMSKAA--VIPFVPRRKP----D--------GKGYELIILPPEDSPP---L-----DDAEATAAWMNKVVEKCILMA 286 (309)
T ss_pred HHHHHhCCe--EEEEEEEEeC----C--------CCeEEEEEecCCCCCC---C-----CCHHHHHHHHHHHHHHHHHcC
Confidence 899999999 9999984322 1 2246778888887531 0 123334455666666665544
Q ss_pred HHHHHHHHHHhcc
Q psy8442 110 KARTEDLHAAHLK 122 (130)
Q Consensus 110 ~~q~e~lh~~~~~ 122 (130)
=.|===.|..|+.
T Consensus 287 PeQw~W~hkRwK~ 299 (309)
T PRK06860 287 PEQYMWLHRRFKT 299 (309)
T ss_pred chHHHHHHHhcCC
Confidence 3333333776653
Done!