Query psy8442
Match_columns 130
No_of_seqs 106 out of 263
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 18:58:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8442.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8442hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iuq_A Glycerol-3-phosphate ac 98.4 3.6E-07 1.2E-11 76.8 7.3 107 12-125 228-356 (367)
2 2r76_A RARE lipoprotein B; alp 49.7 14 0.00047 26.3 3.2 29 91-119 123-151 (152)
3 3bf2_A Putative lipoprotein; N 41.4 10 0.00036 26.9 1.5 29 91-119 123-151 (152)
4 2xdj_A Uncharacterized protein 35.9 32 0.0011 22.7 3.1 22 99-120 29-50 (83)
5 1cxz_B Protein (PKN); protein- 33.8 57 0.0019 21.8 4.1 35 90-124 43-83 (86)
6 1skv_A ORF D-63, hypothetical 32.1 54 0.0018 21.1 3.6 23 90-112 38-62 (69)
7 4i0x_B ESAT-6-like protein MAB 26.9 1.3E+02 0.0043 19.4 4.9 28 94-121 22-51 (103)
8 3tvq_A Multifunctional cyclase 26.8 1.2E+02 0.0043 21.4 5.3 35 91-125 122-156 (169)
9 3gp6_A Protein PAGP, protein C 26.5 14 0.00047 27.7 -0.0 34 37-71 121-155 (163)
10 3w03_C DNA repair protein XRCC 25.6 1.2E+02 0.0041 22.8 5.1 50 61-119 118-167 (184)
11 3f08_A Uncharacterized protein 25.2 50 0.0017 22.7 2.8 29 90-118 113-141 (146)
12 3eff_K Voltage-gated potassium 25.0 1.4E+02 0.0048 20.2 5.1 30 94-123 108-137 (139)
13 2rbd_A BH2358 protein; putativ 24.7 1.2E+02 0.004 21.5 4.8 34 97-130 47-80 (171)
14 3zbh_A ESXA; unknown function, 24.3 1.3E+02 0.0045 18.5 4.8 28 95-122 21-48 (99)
15 4fi5_A Nucleoprotein; structur 22.9 62 0.0021 22.7 2.8 34 89-122 61-94 (113)
16 3fav_B ESAT-6, 6 kDa early sec 21.9 81 0.0028 19.6 3.1 29 95-123 17-45 (94)
17 2k48_A Nucleoprotein; viral pr 21.1 91 0.0031 21.7 3.3 29 90-118 75-103 (107)
18 2kmu_A ATP-dependent DNA helic 20.9 79 0.0027 19.3 2.7 26 103-128 3-28 (56)
19 2yy0_A C-MYC-binding protein; 20.9 1.2E+02 0.004 18.1 3.5 22 100-121 29-50 (53)
20 3q5w_A Protein CUT8; proteasom 20.8 93 0.0032 24.5 3.8 31 66-102 45-75 (245)
21 2vs0_A Virulence factor ESXA; 20.7 1.5E+02 0.0053 18.0 5.4 30 95-124 18-47 (97)
22 3tfz_A Cyclase; helix-GRIP, BE 20.1 2.1E+02 0.0072 19.6 5.3 31 92-122 136-166 (172)
No 1
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=98.45 E-value=3.6e-07 Score=76.81 Aligned_cols=107 Identities=15% Similarity=0.067 Sum_probs=74.2
Q ss_pred cccCceeeec---CCC--cchhe--------eehcccCCCCeeeeEEeeccCccCCCC---------CCCCCcCCCeEEE
Q psy8442 12 YLRSGMETVL---PNE--PLYYL--------RSGMETVLPNEPSYYLRSGMETVLPNE---------PPYYLRRGKTLTF 69 (130)
Q Consensus 12 ~~pEG~V~~~---~~~--~lrfk--------RL~les~~pP~VvPi~~~Gme~V~P~g---------~~y~PR~gkrVtV 69 (130)
-||||-=+.- .++ +..|| +||..|++|--|+|+.+.++ ++||.. .+ ..+++ .|.|
T Consensus 228 IFPEGTRsR~~~~~g~l~~~~Fk~gs~~~~~~LA~ksg~P~hIvPvaI~t~-~imppp~~ve~~~g~~r-~i~~~-~V~v 304 (367)
T 1iuq_A 228 IAPSGGRDRPDPSTGEWYPAPFDASSVDNMRRLIQHSDVPGHLFPLALLCH-DIMPPPSQVEIEIGEKR-VIAFN-GAGL 304 (367)
T ss_dssp ECTTCSCCCBCTTTCCBCCCCCCHHHHHHHHHHHHTSSSCEEEEEEEEECG-GGSCCC----------C-CCCCB-CCEE
T ss_pred EeCCCCCCCCCCCCCccccccccchhhhHHHHHHHHcCCCceEEEEEEEec-cccCCcccccccccccc-eeecc-cEEE
Confidence 4999954431 244 44586 88888998888999999955 677653 33 45777 9999
Q ss_pred EEcCCcCCchhHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc
Q psy8442 70 HVGDPIDLAPILTDLRAANLSDREVRAALTQFIQDELYALKARTEDLHAAHLKEDA 125 (130)
Q Consensus 70 ~vGePId~~~l~~~~~~~~~~~~e~Rr~ITD~Iq~~i~~L~~q~e~lh~~~~~~~~ 125 (130)
.||+||+++++-... .+..+.++++++.|++.|.+.-.+.++.+.-.+--+|
T Consensus 305 ~ig~pI~~~~l~~~~----e~~~e~~~~l~e~v~~~I~~~y~~l~~~i~~~~~~~~ 356 (367)
T 1iuq_A 305 SVAPEISFEEIAATH----KNPEEVREAYSKALFDSVAMQYNVLKTAISGKQGLGA 356 (367)
T ss_dssp EECCCCCHHHHHHTS----SSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCGGGG
T ss_pred EECCccchhhccccc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 999999998763222 2556667789999999998876655554433333333
No 2
>2r76_A RARE lipoprotein B; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.60A {Shewanella oneidensis}
Probab=49.65 E-value=14 Score=26.32 Aligned_cols=29 Identities=17% Similarity=0.192 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8442 91 DREVRAALTQFIQDELYALKARTEDLHAA 119 (130)
Q Consensus 91 ~~e~Rr~ITD~Iq~~i~~L~~q~e~lh~~ 119 (130)
.+++|+.+++.|..+|..++.++|.-|..
T Consensus 123 ~~eM~~~~A~qIvrrL~~~~~~~~~~~~~ 151 (152)
T 2r76_A 123 VKEMRIQAADRILQSMASTEVNLEHHHHH 151 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcccC
Confidence 46788999999999999999999877643
No 3
>3bf2_A Putative lipoprotein; NESG, MR36A, structural genomics, PSI-2, protein structure initiative; 2.60A {Neisseria meningitidis FAM18}
Probab=41.45 E-value=10 Score=26.93 Aligned_cols=29 Identities=31% Similarity=0.228 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8442 91 DREVRAALTQFIQDELYALKARTEDLHAA 119 (130)
Q Consensus 91 ~~e~Rr~ITD~Iq~~i~~L~~q~e~lh~~ 119 (130)
.+++++.+++.|..+|..++.++|.-|..
T Consensus 123 ~~eM~~d~A~qIvrrL~~~~~~~~~~~~~ 151 (152)
T 3bf2_A 123 WAEMRQDAAEQIVRRLTFLKAELEHHHHH 151 (152)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTC-------
T ss_pred HHHHHHHHHHHHHHHHHhhhHhhhhhccC
Confidence 35688899999999999999999887653
No 4
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=35.93 E-value=32 Score=22.67 Aligned_cols=22 Identities=9% Similarity=0.078 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy8442 99 TQFIQDELYALKARTEDLHAAH 120 (130)
Q Consensus 99 TD~Iq~~i~~L~~q~e~lh~~~ 120 (130)
-+.++.+|.+|+|++|.+-.+.
T Consensus 29 l~~Lq~Ev~~LRGqiE~~~~~l 50 (83)
T 2xdj_A 29 LSDNQSDIDSLRGQIQENQYQL 50 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHH
Confidence 3577888999999999875443
No 5
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=33.80 E-value=57 Score=21.76 Aligned_cols=35 Identities=20% Similarity=0.127 Sum_probs=25.6
Q ss_pred ChHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhccCC
Q psy8442 90 SDREVRAALTQ------FIQDELYALKARTEDLHAAHLKED 124 (130)
Q Consensus 90 ~~~e~Rr~ITD------~Iq~~i~~L~~q~e~lh~~~~~~~ 124 (130)
.+..++++.|| .|..++.....+.+.||.+.+--+
T Consensus 43 GaENL~katt~~kk~~~~V~~eL~~sn~kl~~L~~eL~eL~ 83 (86)
T 1cxz_B 43 GAENLRRATTDLGRSLGPVELLLRGSSRRLDLLHQQLQELH 83 (86)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34557788887 777788888888888888775433
No 6
>1skv_A ORF D-63, hypothetical 7.5 kDa protein; sulfolobus spindle virus, SSV, archaeal, crenarchaeal, helix-turn-helix, four helix bundle; 2.60A {Sulfolobus virus 1} SCOP: a.30.5.1
Probab=32.12 E-value=54 Score=21.08 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=16.8
Q ss_pred ChHHHHHH--HHHHHHHHHHHHHHH
Q psy8442 90 SDREVRAA--LTQFIQDELYALKAR 112 (130)
Q Consensus 90 ~~~e~Rr~--ITD~Iq~~i~~L~~q 112 (130)
+...+-|| +|++||.+++.|+.-
T Consensus 38 ~kekvekAlfLsq~IqaELy~l~l~ 62 (69)
T 1skv_A 38 DKQKLGKAYFQVQKIEAELYQLIKV 62 (69)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555 599999999999754
No 7
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=26.89 E-value=1.3e+02 Score=19.39 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--hc
Q psy8442 94 VRAALTQFIQDELYALKARTEDLHAA--HL 121 (130)
Q Consensus 94 ~Rr~ITD~Iq~~i~~L~~q~e~lh~~--~~ 121 (130)
.....+..|++.|.+|..+++.|... |+
T Consensus 22 ~~~~~~~~i~~~l~~L~~~v~~L~~~g~W~ 51 (103)
T 4i0x_B 22 RARGFKEFVTENLDQLESRAQKLVQSGQWA 51 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCee
Confidence 35678889999999999999999887 74
No 8
>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A
Probab=26.85 E-value=1.2e+02 Score=21.40 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc
Q psy8442 91 DREVRAALTQFIQDELYALKARTEDLHAAHLKEDA 125 (130)
Q Consensus 91 ~~e~Rr~ITD~Iq~~i~~L~~q~e~lh~~~~~~~~ 125 (130)
...+.+++..-+...|..||..+|+.+..-..+.+
T Consensus 122 ~~~~~~av~~~~~~~L~~LK~~aE~~~~~~~~~~~ 156 (169)
T 3tvq_A 122 NAHMTAHLNTTTRANMERIKKIIEDRHREGQRTPA 156 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhhhcCCCcc
Confidence 34467788888999999999999999888765443
No 9
>3gp6_A Protein PAGP, protein CRCA; palmitoyltransferase, beta-barrel, outer membrane enzyme, PA MPD, transferase; HET: SDS; 1.40A {Escherichia coli} SCOP: f.4.1.2 PDB: 1mm4_A 1mm5_A 1thq_A*
Probab=26.50 E-value=14 Score=27.70 Aligned_cols=34 Identities=12% Similarity=-0.042 Sum_probs=26.2
Q ss_pred CC-CeeeeEEeeccCccCCCCCCCCCcCCCeEEEEE
Q psy8442 37 LP-NEPSYYLRSGMETVLPNEPPYYLRRGKTLTFHV 71 (130)
Q Consensus 37 ~p-P~VvPi~~~Gme~V~P~g~~y~PR~gkrVtV~v 71 (130)
.| |+++|++-+|..++.=... |+|...+.-.|.|
T Consensus 121 iP~P~~LPlaSigY~~~s~q~T-YIPgt~nNGNV~F 155 (163)
T 3gp6_A 121 IPLPVLLPLASVGYGPVTFQMT-YIPGTYNNGNVYF 155 (163)
T ss_dssp CEEEEEEEEEEEEETTEEEEEE-EECCSSSSCCEEE
T ss_pred cccceeeeeeeeecccEEEEEE-EcCCcCCCccEEE
Confidence 55 9999999999998877777 6887665555544
No 10
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=25.61 E-value=1.2e+02 Score=22.80 Aligned_cols=50 Identities=22% Similarity=0.361 Sum_probs=30.6
Q ss_pred CcCCCeEEEEEcCCcCCchhHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8442 61 LRRGKTLTFHVGDPIDLAPILTDLRAANLSDREVRAALTQFIQDELYALKARTEDLHAA 119 (130)
Q Consensus 61 PR~gkrVtV~vGePId~~~l~~~~~~~~~~~~e~Rr~ITD~Iq~~i~~L~~q~e~lh~~ 119 (130)
.+.++.|.+..| -+.+... . +..+..+++-|..++++.+|+.+.++|-++
T Consensus 118 eK~l~di~frLG-Sv~L~~v----~----~p~e~i~elid~~ld~~~~L~~~n~~Lqke 167 (184)
T 3w03_C 118 EKNLKDVSFRLG-SFNLEKV----E----NPAEVIRELICYCLDTIAENQAKNEHLQKE 167 (184)
T ss_dssp EEEETTEEEEEE-EEECEEC----S----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeccCceEEEEe-eeeeeEC----C----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566777777 3444322 1 456667777777777777777776666443
No 11
>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} SCOP: d.129.3.8 PDB: 3cnw_A
Probab=25.21 E-value=50 Score=22.73 Aligned_cols=29 Identities=31% Similarity=0.274 Sum_probs=23.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8442 90 SDREVRAALTQFIQDELYALKARTEDLHA 118 (130)
Q Consensus 90 ~~~e~Rr~ITD~Iq~~i~~L~~q~e~lh~ 118 (130)
++..+++.++..++..|..|+..+|.|..
T Consensus 113 ~~~~~~~~~~~~~~~~L~~Lk~~~e~~~~ 141 (146)
T 3f08_A 113 SDEEAINLVHGIYSDGLKALQHAFLDLEH 141 (146)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 45667889999999999999999998843
No 12
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=25.02 E-value=1.4e+02 Score=20.18 Aligned_cols=30 Identities=17% Similarity=0.067 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy8442 94 VRAALTQFIQDELYALKARTEDLHAAHLKE 123 (130)
Q Consensus 94 ~Rr~ITD~Iq~~i~~L~~q~e~lh~~~~~~ 123 (130)
.++...+.+.+++.+|..+.++++++..+.
T Consensus 108 ~~~~~~~~l~~~~~~l~~~l~~le~~~~~~ 137 (139)
T 3eff_K 108 SEKAAEEAYTRTTRALHERFDRLERMLDDN 137 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344566677778888888888887776553
No 13
>2rbd_A BH2358 protein; putative spore coat protein, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.54A {Bacillus halodurans c-125}
Probab=24.73 E-value=1.2e+02 Score=21.45 Aligned_cols=34 Identities=15% Similarity=0.329 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCcCCCCC
Q psy8442 97 ALTQFIQDELYALKARTEDLHAAHLKEDARMPKG 130 (130)
Q Consensus 97 ~ITD~Iq~~i~~L~~q~e~lh~~~~~~~~~~~~~ 130 (130)
++-..|++.+..+..+.+.+....+..+..+|+|
T Consensus 47 elk~iL~~~~~~~~~~i~~l~~~~~~~g~p~P~~ 80 (171)
T 2rbd_A 47 DLKNLIDEAIQAMQDENHQLEELLRSNGVGLPPA 80 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Confidence 3455566667778889999998888888888864
No 14
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=24.26 E-value=1.3e+02 Score=18.48 Aligned_cols=28 Identities=7% Similarity=0.020 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy8442 95 RAALTQFIQDELYALKARTEDLHAAHLK 122 (130)
Q Consensus 95 Rr~ITD~Iq~~i~~L~~q~e~lh~~~~~ 122 (130)
.....+.|+..+.+|..+++.|...|.-
T Consensus 21 ~~~~~~~i~~~l~~L~~~v~~L~~~W~G 48 (99)
T 3zbh_A 21 YNVESSNVTELIARLDQMSHTLQGIWEG 48 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 4667888999999999999998877753
No 15
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=22.91 E-value=62 Score=22.74 Aligned_cols=34 Identities=21% Similarity=0.108 Sum_probs=25.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy8442 89 LSDREVRAALTQFIQDELYALKARTEDLHAAHLK 122 (130)
Q Consensus 89 ~~~~e~Rr~ITD~Iq~~i~~L~~q~e~lh~~~~~ 122 (130)
++.-..|+.+...|++.|.+|+.|.-.......+
T Consensus 61 K~tl~~R~~~Vs~lq~KiaeLKrqLAd~va~~k~ 94 (113)
T 4fi5_A 61 KRTLTDREGVAVSIQAKIDELKRQLADRIATGKN 94 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3456678999999999999999998766554433
No 16
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=21.87 E-value=81 Score=19.58 Aligned_cols=29 Identities=21% Similarity=-0.048 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy8442 95 RAALTQFIQDELYALKARTEDLHAAHLKE 123 (130)
Q Consensus 95 Rr~ITD~Iq~~i~~L~~q~e~lh~~~~~~ 123 (130)
.+..+..|+..|.+|.++++.+...|.-.
T Consensus 17 ~~~~~~~i~~~l~~l~~~v~~l~~~W~G~ 45 (94)
T 3fav_B 17 IQGNVTSIHSLLDEGKQSLTKLAAAWGGS 45 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTGGGGTCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCcH
Confidence 56788999999999999999998777644
No 17
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=21.11 E-value=91 Score=21.67 Aligned_cols=29 Identities=31% Similarity=0.282 Sum_probs=23.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8442 90 SDREVRAALTQFIQDELYALKARTEDLHA 118 (130)
Q Consensus 90 ~~~e~Rr~ITD~Iq~~i~~L~~q~e~lh~ 118 (130)
++-..|+++.+.|++.|.+|+.|.-...+
T Consensus 75 ~tl~~R~~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 75 STLQNRRAAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567899999999999999999766544
No 18
>2kmu_A ATP-dependent DNA helicase Q4; recql4, DNA-replication, homeodomain-like, ATP-BIN cataract, craniosynostosis, disease mutation, dwarfism; NMR {Homo sapiens}
Probab=20.90 E-value=79 Score=19.32 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHhccCCcCCC
Q psy8442 103 QDELYALKARTEDLHAAHLKEDARMP 128 (130)
Q Consensus 103 q~~i~~L~~q~e~lh~~~~~~~~~~~ 128 (130)
|+.+.+|+.++..+..++.....|.|
T Consensus 3 me~~~~lk~~LK~WE~~F~~~~GRkP 28 (56)
T 2kmu_A 3 MERLRDVRERLQAWERAFRRQRGRRP 28 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 67888899999999888866556655
No 19
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=20.86 E-value=1.2e+02 Score=18.14 Aligned_cols=22 Identities=14% Similarity=0.164 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q psy8442 100 QFIQDELYALKARTEDLHAAHL 121 (130)
Q Consensus 100 D~Iq~~i~~L~~q~e~lh~~~~ 121 (130)
+.++.++..|..+.+.+..+..
T Consensus 29 ~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 29 AEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666666666666655543
No 20
>3q5w_A Protein CUT8; proteasome, tether, chromosome, cell cycle, dimer, NOVE; 2.75A {Schizosaccharomyces pombe} PDB: 3q5x_A
Probab=20.83 E-value=93 Score=24.52 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=21.9
Q ss_pred eEEEEEcCCcCCchhHHHHHhcCCChHHHHHHHHHHH
Q psy8442 66 TLTFHVGDPIDLAPILTDLRAANLSDREVRAALTQFI 102 (130)
Q Consensus 66 rVtV~vGePId~~~l~~~~~~~~~~~~e~Rr~ITD~I 102 (130)
|.. ..|.|++++++++.+. ..+++..+++.+
T Consensus 45 R~~-i~GqpLPL~RlLEtLd-----k~qL~sLL~~L~ 75 (245)
T 3q5w_A 45 RQL-PVGEQLPLSRLLQYSD-----KQQLFTILLQCV 75 (245)
T ss_dssp CCC-CCCCCCCHHHHTTSSC-----HHHHHHHHHHHH
T ss_pred CCC-CCCCCCCHHHHHHhCC-----HHHHHHHHHHHH
Confidence 344 8999999999888774 566665555543
No 21
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=20.73 E-value=1.5e+02 Score=18.03 Aligned_cols=30 Identities=13% Similarity=0.058 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy8442 95 RAALTQFIQDELYALKARTEDLHAAHLKED 124 (130)
Q Consensus 95 Rr~ITD~Iq~~i~~L~~q~e~lh~~~~~~~ 124 (130)
.+...+.|+..+.+|..+++.|...|.-..
T Consensus 18 ~~~~~~~l~~~l~~L~~~~~~L~~~W~G~a 47 (97)
T 2vs0_A 18 YGQGSDQIRQILSDLTRAQGEIAANWEGQA 47 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCcHH
Confidence 456788899999999999999888775443
No 22
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}
Probab=20.10 E-value=2.1e+02 Score=19.64 Aligned_cols=31 Identities=16% Similarity=0.036 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy8442 92 REVRAALTQFIQDELYALKARTEDLHAAHLK 122 (130)
Q Consensus 92 ~e~Rr~ITD~Iq~~i~~L~~q~e~lh~~~~~ 122 (130)
..+++++..-++..|..||..+|+.+.+...
T Consensus 136 ~~~~~~l~~~~~~~L~~lk~~aE~~~~~~~~ 166 (172)
T 3tfz_A 136 EMLEAVVERNSVADLNAVLGEAERRVRAAGG 166 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhcCC
Confidence 3467888888999999999999998877643
Done!