RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy8442
         (130 letters)



>gnl|CDD|131685 TIGR02637, RhaS, rhamnose ABC transporter, rhamnose-binding
           protein.  This sugar-binding component of ABC
           transporter complexes is found in rhamnose catabolism
           operon contexts. Mutation of this gene in Rhizobium
           leguminosarum abolishes rhamnose transport and prevents
           growth on rhamnose as a carbon source.
          Length = 302

 Score = 27.9 bits (62), Expect = 1.6
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 53  LPNEPPYYLRRGKTLTFHVGDPIDLAPILTDLRAANLSDREVRA 96
           LP+E   Y++ G    F + +PIDL        A  LS  E+  
Sbjct: 220 LPSEMAKYVKNGTVKAFALWNPIDLGYSAAYT-AYRLSSGEITG 262


>gnl|CDD|234580 PRK00025, lpxB, lipid-A-disaccharide synthase; Reviewed.
          Length = 380

 Score = 26.6 bits (60), Expect = 3.9
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 51  TVLPNEPPYYLRRGKTLTFHVGDPI-DLAPILTDLRAA 87
            + P E  +Y + G  +TF VG P+ D  P+L D  AA
Sbjct: 140 ALFPFEAAFYDKLGVPVTF-VGHPLADAIPLLPDRAAA 176


>gnl|CDD|153251 cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases
           (LPLATs) of Glycerophospholipid Biosynthesis:
           AGPAT-like.  Lysophospholipid acyltransferase (LPLAT)
           superfamily member: acyltransferases of de novo and
           remodeling pathways of glycerophospholipid biosynthesis
           which catalyze the incorporation of an acyl group from
           either acylCoAs or acyl-acyl carrier proteins (acylACPs)
           into acceptors such as glycerol 3-phosphate,
           dihydroxyacetone phosphate or lyso-phosphatidic acid.
           Included in this subgroup are such LPLATs as
           1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
           PlsC), Tafazzin (product of Barth syndrome gene), and
           similar proteins.
          Length = 184

 Score = 26.5 bits (59), Expect = 4.0
 Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 6/52 (11%)

Query: 47  SGMETVLPNEPPYYLRRGKTLTFHVGDPIDLAPILTDLRAANLSDREVRAAL 98
           SG    LP      L R   +T  +G+PI        L  A    +E+R  +
Sbjct: 138 SGTWGSLP--KGKKLPRPGRVTVRIGEPIP----PEGLELAEEDRKELREKV 183


>gnl|CDD|216447 pfam01346, FKBP_N, Domain amino terminal to FKBP-type
           peptidyl-prolyl isomerase.  This family is only found at
           the amino terminus of pfam00254. This domain is of
           unknown function.
          Length = 124

 Score = 24.9 bits (55), Expect = 9.6
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 6/66 (9%)

Query: 64  GKTLTFHVGDPIDLAPILTDLRAAN------LSDREVRAALTQFIQDELYALKARTEDLH 117
           G+ L     + +D   +L  L+ A       L+D E++ AL  F +      +A+ E   
Sbjct: 34  GRYLKQQGEEQLDKDALLQGLQDALAGKELKLTDEEIQKALQAFQKKLQAKQQAKAEKKA 93

Query: 118 AAHLKE 123
             +   
Sbjct: 94  EENKAA 99


>gnl|CDD|203685 pfam07568, HisKA_2, Histidine kinase.  This is the dimerisation and
           phosphoacceptor domain of a sub-family of histidine
           kinases. It shares sequence similarity with pfam00512
           and pfam07536. It is usually found adjacent to a
           C-terminal ATPase domain (pfam02518). This domain is
           found in a wide range of Bacteria and also several
           Archaea.
          Length = 76

 Score = 24.4 bits (54), Expect = 9.8
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 13/52 (25%)

Query: 81  LTDLRAANLSDREVRAALTQF---------IQDELYALKARTEDLHAAHLKE 123
           L  L+A    D EV+ AL +          I +ELY    ++EDL      E
Sbjct: 16  LLRLQARRAKDEEVKEALRESQNRVLSMALIHEELY----KSEDLDTVDFSE 63


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.316    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0711    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,825,721
Number of extensions: 615160
Number of successful extensions: 608
Number of sequences better than 10.0: 1
Number of HSP's gapped: 607
Number of HSP's successfully gapped: 29
Length of query: 130
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 44
Effective length of database: 7,123,158
Effective search space: 313418952
Effective search space used: 313418952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.2 bits)