RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy8442
         (130 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.2 bits (70), Expect = 0.083
 Identities = 17/120 (14%), Positives = 33/120 (27%), Gaps = 42/120 (35%)

Query: 25  PLYYLRSGM--ETVLPNE--PSYYLRSGMETVLPNEPPYYLRRGKTLTFHVGDPIDLAPI 80
           P   L   +  +++  NE  PS      M ++                      +    +
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSP-----MLSI----------SN----------LTQEQV 349

Query: 81  LTDLRAANLS---DREVRAAL----TQFI-----QDELYALKARTEDLHAAHLKEDARMP 128
              +   N      ++V  +L       +     Q  LY L        A    + +R+P
Sbjct: 350 QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQS-LYGLNLTLRKAKAPSGLDQSRIP 408


>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing,
           cytoplasm, hydrolase, manganese, metal-binding,
           metalloprotease, protease; HET: P6G; 1.60A {Homo
           sapiens}
          Length = 623

 Score = 29.9 bits (68), Expect = 0.19
 Identities = 26/119 (21%), Positives = 42/119 (35%), Gaps = 36/119 (30%)

Query: 29  LRSGMETVLPNEPSYYLRSG--------METVLPNEPPYYLRRGKTLTFH----VGDPID 76
           L +GM  ++ +EP YY   G        +  V+P +  Y      +LT      V  PI 
Sbjct: 514 LEAGM--IVTDEPGYY-EDGAFGIRIENVVLVVPVKTKYNFNNRGSLTLEPLTLV--PIQ 568

Query: 77  LAPILTDLRAANLSDRE----------VRAALTQFIQDELYA-----LKARTEDLHAAH 120
              I  D     L+D+E           R  + + +Q +        L   T+ +   H
Sbjct: 569 TKMIDVDS----LTDKECDWLNNYHLTCRDVIGKELQKQGRQEALEWLIRETQPISKQH 623


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
           fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
           RED beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 1688

 Score = 29.5 bits (66), Expect = 0.37
 Identities = 11/55 (20%), Positives = 19/55 (34%)

Query: 72  GDPIDLAPILTDLRAANLSDREVRAALTQFIQDELYALKARTEDLHAAHLKEDAR 126
               +L      LR   +   EVR A++     E   +   + D   A ++   R
Sbjct: 732 QFVPELKEFTAKLRKELVETSEVRKAVSIETALEHKVVNGNSADAAYAQVEIQPR 786


>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase,
           thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP:
           a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2
           PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A*
           1jdb_B* 1kee_A* 1t36_A*
          Length = 1073

 Score = 25.9 bits (58), Expect = 4.6
 Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 6/24 (25%)

Query: 70  HVGDPIDLAPILTDLRAANLSDRE 93
           H GD I +AP  T      L+D+E
Sbjct: 243 HTGDSITVAPAQT------LTDKE 260


>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM;
           1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
          Length = 591

 Score = 25.0 bits (54), Expect = 9.2
 Identities = 19/70 (27%), Positives = 24/70 (34%), Gaps = 13/70 (18%)

Query: 2   ETVLPNEPSYYLRSGMETVLPNEPLYYL------RSGMETV-----LPNEPSYYLRSGME 50
           E V   E S  LR    T+     LY L      R G+         P   S++L  GM 
Sbjct: 514 EVVWRTEDSSALRIYTTTIPTEHRLYTLMHDPVYRLGIAWQNIAYNQPPHTSFFLGDGMA 573

Query: 51  TVLPNEPPYY 60
                +P  Y
Sbjct: 574 E--QPKPNMY 581


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.316    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0533    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,008,145
Number of extensions: 113315
Number of successful extensions: 227
Number of sequences better than 10.0: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 14
Length of query: 130
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 47
Effective length of database: 4,384,350
Effective search space: 206064450
Effective search space used: 206064450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.3 bits)