BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8443
(330 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AQB|A Chain A, Mbl-Ficolin Associated Protein-1, Map-1 Aka Map44
Length = 361
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/279 (32%), Positives = 132/279 (47%), Gaps = 29/279 (10%)
Query: 63 LKHSNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLT 122
L + G + SP +PD Y + W I P +RI L F HF++E + L CEYD
Sbjct: 5 LNNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESSYL----CEYD--- 57
Query: 123 VFSKIGDSFKSQGVFCGSKL--------PPVILSEGNALRIEFHSD--NSVQKSGFSAFF 172
+ K+ + FCG + V+LS G+ + I F SD N + +GF A +
Sbjct: 58 -YVKVETEDQVLATFCGRETTDTEQTPGQEVVLSPGSFMSITFRSDFSNEERFTGFDAHY 116
Query: 173 F-TDKDECMTNNG---GCQHECRNTIGSYICSCHNGYTLLENGHDCKEGGCKYEITAPNG 228
D DEC C H C N IG Y CSC GY L + C+ T G
Sbjct: 117 MAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTCRVECSDNLFTQRTG 176
Query: 229 VIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQE-FELE--PHQTCAYDHVVMYDGDSP 285
VI +P+ P+ YP EC++ G + L F++ F++E P C YD++ + G
Sbjct: 177 VITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDHPEVPCPYDYIKIKVGPK- 235
Query: 286 DSLTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGF 324
LG FCG K P PI T S+ + ++F SD S + +G+
Sbjct: 236 ---VLGPFCGEKAPEPISTQSHSVLILFHSDNSGENRGW 271
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 103/210 (49%), Gaps = 21/210 (10%)
Query: 12 DECAL---EDHGCEHTCKNILGGYECSCKIGYELHSDGKICVGSVKARDACGGILKHSNG 68
DEC E+ C+H C N +GGY CSC+ GY LH+D + C V+ D + G
Sbjct: 122 DECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTC--RVECSD---NLFTQRTG 176
Query: 69 TLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTH-FDIEGNNLFQSSCEYDNLTVFSKI 127
+TSP FP+ Y K+ C++ I + ++L F FDIE + + C YD + + K+
Sbjct: 177 VITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDHP--EVPCPYDYIKI--KV 232
Query: 128 GDSFKSQGVFCGSKLPPVILSEGNALRIEFHSDNSVQKSGFSAFFFTDKDECMTNNGGCQ 187
G K G FCG K P I ++ +++ I FHSDNS + G+ + +EC
Sbjct: 233 GP--KVLGPFCGEKAPEPISTQSHSVLILFHSDNSGENRGWRLSYRAAGNECPELQPPVH 290
Query: 188 HECRNTIGSY------ICSCHNGYTLLENG 211
+ + Y + SC GY +L++
Sbjct: 291 GKIEPSQAKYFFKDQVLVSCDTGYKVLKDN 320
>pdb|3DEM|A Chain A, Cub1-egf-cub2 Domain Of Human Masp-1/3
pdb|3DEM|B Chain B, Cub1-egf-cub2 Domain Of Human Masp-1/3
Length = 278
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 92/279 (32%), Positives = 132/279 (47%), Gaps = 29/279 (10%)
Query: 63 LKHSNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLT 122
L + G + SP +PD Y + W I P +RI L F HF++E + L CEYD
Sbjct: 5 LNNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESSYL----CEYD--- 57
Query: 123 VFSKIGDSFKSQGVFCGSKL--------PPVILSEGNALRIEFHSD--NSVQKSGFSAFF 172
+ K+ + FCG + V+LS G+ + I F SD N + +GF A +
Sbjct: 58 -YVKVETEDQVLATFCGRETTDTEQTPGQEVVLSPGSFMSITFRSDFSNEERFTGFDAHY 116
Query: 173 F-TDKDECMTNNG---GCQHECRNTIGSYICSCHNGYTLLENGHDCKEGGCKYEITAPNG 228
D DEC C H C N IG Y CSC GY L + C+ T G
Sbjct: 117 MAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTCRVECSDNLFTQRTG 176
Query: 229 VIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQE-FELE--PHQTCAYDHVVMYDGDSP 285
VI +P+ P+ YP EC++ G + L F++ F++E P C YD++ + G
Sbjct: 177 VITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDHPEVPCPYDYIKIKVGPK- 235
Query: 286 DSLTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGF 324
LG FCG K P PI T S+ + ++F SD S + +G+
Sbjct: 236 ---VLGPFCGEKAPEPISTQSHSVLILFHSDNSGENRGW 271
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 87/161 (54%), Gaps = 15/161 (9%)
Query: 12 DECAL---EDHGCEHTCKNILGGYECSCKIGYELHSDGKICVGSVKARDACGGILKHSNG 68
DEC E+ C+H C N +GGY CSC+ GY LH+D + C V+ D + G
Sbjct: 122 DECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTC--RVECSD---NLFTQRTG 176
Query: 69 TLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTH-FDIEGNNLFQSSCEYDNLTVFSKI 127
+TSP FP+ Y K+ C++ I + ++L F FDIE + + C YD + + K+
Sbjct: 177 VITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDHP--EVPCPYDYIKI--KV 232
Query: 128 GDSFKSQGVFCGSKLPPVILSEGNALRIEFHSDNSVQKSGF 168
G K G FCG K P I ++ +++ I FHSDNS + G+
Sbjct: 233 GP--KVLGPFCGEKAPEPISTQSHSVLILFHSDNSGENRGW 271
>pdb|1NT0|A Chain A, Crystal Structure Of The Cub1-Egf-Cub2 Region Of Masp2
pdb|1NT0|G Chain G, Crystal Structure Of The Cub1-Egf-Cub2 Region Of Masp2
Length = 286
Score = 134 bits (338), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 93/280 (33%), Positives = 129/280 (46%), Gaps = 29/280 (10%)
Query: 68 GTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKI 127
G L SP FP+ Y ++ W + APP +R+ L FTHF++E CEYD F K+
Sbjct: 9 GRLVSPGFPEKYGNHQDRSWTLTAPPGFRLRLYFTHFNLE----LSYRCEYD----FVKL 60
Query: 128 GDSFKSQGVFCGSKLPPVILSEGN--------ALRIEFHSDNSVQK--SGFSAFFFT-DK 176
K CG + + GN +L++ FHSD S +K +GF AF+ D
Sbjct: 61 TSGTKVLATLCGQESTDTERAPGNDTFYSLGPSLKVTFHSDYSNEKPFTGFEAFYAAEDV 120
Query: 177 DECMTNNGG---CQHECRNTIGSYICSCHNGYTLLENGHDCKEGGCKYEITAPNGVIKTP 233
DEC T+ G C H C +G Y CSC GY L +N H C T +G + +P
Sbjct: 121 DECRTSLGDSVPCDHYCHXYLGGYYCSCRVGYILHQNKHTCSALCSGQVFTGRSGFLSSP 180
Query: 234 NHPDYYPSKRECIWHFTTTPGHRIKLVFQE---FELEPHQTCAYDHVVMYDGDSPDSLTL 290
+P YP C ++ G I L F E E+ P C YD + + D
Sbjct: 181 EYPQPYPKLSSCAYNIRLEEGFSITLDFVESFDVEMHPEAQCPYDSLKI----QTDKREY 236
Query: 291 GRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATHTT 330
G FCG LP I T SN++ + F +D S G+ +T+
Sbjct: 237 GPFCGKTLPPRIETDSNKVTITFTTDESGNHTGWKIHYTS 276
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 76/149 (51%), Gaps = 12/149 (8%)
Query: 21 CEHTCKNILGGYECSCKIGYELHSDGKICVGSVKARDACGGILKHSNGTLTSPSFPDLYI 80
C+H C LGGY CSC++GY LH + C G + +G L+SP +P Y
Sbjct: 133 CDHYCHXYLGGYYCSCRVGYILHQNKHTCSALCS-----GQVFTGRSGFLSSPEYPQPYP 187
Query: 81 KNKTCIWEIVAPPQYRISLNFTH-FDIEGNNLFQSSCEYDNLTVFSKIGDSFKSQGVFCG 139
K +C + I + I+L+F FD+E + ++ C YD+L KI + G FCG
Sbjct: 188 KLSSCAYNIRLEEGFSITLDFVESFDVEMHP--EAQCPYDSL----KIQTDKREYGPFCG 241
Query: 140 SKLPPVILSEGNALRIEFHSDNSVQKSGF 168
LPP I ++ N + I F +D S +G+
Sbjct: 242 KTLPPRIETDSNKVTITFTTDESGNHTGW 270
>pdb|4GZ9|A Chain A, Mouse Neuropilin-1, Extracellular Domains 1-4 (A1a2b1b2)
pdb|4GZA|H Chain H, Complex Of Mouse Plexin A2 - Semaphorin 3a - Neuropilin-1
Length = 577
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 128/283 (45%), Gaps = 52/283 (18%)
Query: 57 DACGGILKHSN-GTLTSPSFPDLYIKNKTCIWEIVAP-PQYRISLNFT-HFDIEGNNLFQ 113
D CGG +K N G LTSP +P Y ++ C W I AP P RI +NF HFD+E +
Sbjct: 7 DKCGGTIKIENPGYLTSPGYPHSYHPSEKCEWLIQAPEPYQRIMINFNPHFDLEDRD--- 63
Query: 114 SSCEYDNLTVFSKIGDSFKSQGVFCGSKLPPVILSEGNALRIEFHSDNSVQKSGFSAFFF 173
C+YD + V + + G FCG P ++S G L I+F SD +GFS
Sbjct: 64 --CKYDYVEVIDGENEGGRLWGKFCGKIAPSPVVSSGPFLFIKFVSDYETHGAGFSI--- 118
Query: 174 TDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGGCKYEITAPNGVIKTP 233
Y + + G +C + TAP GVIK+P
Sbjct: 119 ------------------------------RYEIFKRGPECSQ-----NYTAPTGVIKSP 143
Query: 234 NHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQT------CAYDHVVMYDGDSPDS 287
P+ YP+ EC + I L F+ F+LE C YD + ++DG
Sbjct: 144 GFPEKYPNSLECTYIIFAPKMSEIILEFESFDLEQDSNPPGGMFCRYDRLEIWDGFPEVG 203
Query: 288 LTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATHTT 330
+GR+CG K P I + S L M+F +D+++ ++GF A ++
Sbjct: 204 PHIGRYCGQKTPGRIRSSSGVLSMVFYTDSAIAKEGFSANYSV 246
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 61/137 (44%), Gaps = 9/137 (6%)
Query: 40 YELHSDG-KICVGSVKARDACGGILKHSNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRIS 98
YE H G I K C G + SP FP+ Y + C + I AP I
Sbjct: 109 YETHGAGFSIRYEIFKRGPECSQNYTAPTGVIKSPGFPEKYPNSLECTYIIFAPKMSEII 168
Query: 99 LNFTHFDIEGNN-----LFQSSCEYDNLTVFSKIGDSFKSQGVFCGSKLPPVILSEGNAL 153
L F FD+E ++ +F C YD L ++ + G +CG K P I S L
Sbjct: 169 LEFESFDLEQDSNPPGGMF---CRYDRLEIWDGFPEVGPHIGRYCGQKTPGRIRSSSGVL 225
Query: 154 RIEFHSDNSVQKSGFSA 170
+ F++D+++ K GFSA
Sbjct: 226 SMVFYTDSAIAKEGFSA 242
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 4/118 (3%)
Query: 209 ENGHDCKEGGCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTT-TPGHRIKLVFQ-EFEL 266
E G + G +I P G + +P +P Y +C W P RI + F F+L
Sbjct: 1 ETGFRSDKCGGTIKIENP-GYLTSPGYPHSYHPSEKCEWLIQAPEPYQRIMINFNPHFDL 59
Query: 267 EPHQTCAYDHVVMYDGDSPDSLTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGF 324
E + C YD+V + DG++ G+FCG P P+++ L++ F SD GF
Sbjct: 60 E-DRDCKYDYVEVIDGENEGGRLWGKFCGKIAPSPVVSSGPFLFIKFVSDYETHGAGF 116
>pdb|2QQK|A Chain A, Neuropilin-2 A1a2b1b2 Domains In Complex With A
Semaphorin-Blocking Fab
pdb|2QQL|A Chain A, Neuropilin-2 A1a2b1b2 Domains In Complex With A
Semaphorin-Blocking Fab
Length = 579
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 127/279 (45%), Gaps = 51/279 (18%)
Query: 59 CGGILKHSN-GTLTSPSFPDLYIKNKTCIWEIVAP-PQYRISLNFT-HFDIEGNNLFQSS 115
CGG L + G +TSP +P Y ++ C W + AP P +I LNF HF+IE ++
Sbjct: 6 CGGRLNSKDAGYITSPGYPQDYPSHQNCEWIVYAPEPNQKIVLNFNPHFEIEKHD----- 60
Query: 116 CEYDNLTVFSKIGDSFKSQGVFCGSKLPPVILSEGNALRIEFHSDNSVQKSGFSAFFFTD 175
C+YD + + +S G CG+ PP I+S G+ L I+F SD + Q +GFS
Sbjct: 61 CKYDFIEIRDGDSESADLLGKHCGNIAPPTIISSGSMLYIKFTSDYARQGAGFSL----- 115
Query: 176 KDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGGCKYEITAPNGVIKTPNH 235
Y + + G + C T+PNG I++P
Sbjct: 116 ----------------------------RYEIFKTGSE----DCSKNFTSPNGTIESPGF 143
Query: 236 PDYYPSKRECIWHFTTTPGHRIKLVFQEFELE--PHQT----CAYDHVVMYDGDSPDSLT 289
P+ YP +C + P I L F F+LE P Q C YD + ++DG
Sbjct: 144 PEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPLQVGEGDCKYDWLDIWDGIPHVGPL 203
Query: 290 LGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATH 328
+G++CG K P + + + L + F +D +V + GF A +
Sbjct: 204 IGKYCGTKTPSELRSSTGILSLTFHTDMAVAKDGFSARY 242
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 64/126 (50%), Gaps = 2/126 (1%)
Query: 59 CGGILKHSNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLF--QSSC 116
C NGT+ SP FP+ Y N C + I+A P+ I L F FD+E + L + C
Sbjct: 127 CSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPLQVGEGDC 186
Query: 117 EYDNLTVFSKIGDSFKSQGVFCGSKLPPVILSEGNALRIEFHSDNSVQKSGFSAFFFTDK 176
+YD L ++ I G +CG+K P + S L + FH+D +V K GFSA ++
Sbjct: 187 KYDWLDIWDGIPHVGPLIGKYCGTKTPSELRSSTGILSLTFHTDMAVAKDGFSARYYLVH 246
Query: 177 DECMTN 182
E + N
Sbjct: 247 QEPLEN 252
>pdb|3KQ4|B Chain B, Structure Of Intrinsic Factor-Cobalamin Bound To Its
Receptor Cubilin
pdb|3KQ4|D Chain D, Structure Of Intrinsic Factor-Cobalamin Bound To Its
Receptor Cubilin
pdb|3KQ4|F Chain F, Structure Of Intrinsic Factor-Cobalamin Bound To Its
Receptor Cubilin
Length = 457
Score = 100 bits (250), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 125/281 (44%), Gaps = 51/281 (18%)
Query: 52 SVKARDACGGILKHSNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNL 111
++ A AC GT TSP+FP+ Y N CI+ I I+++FT+F +E
Sbjct: 110 AISAATACLQDYTDDLGTFTSPNFPNNYPNNWECIYRITVRTGQLIAVHFTNFSLE---- 165
Query: 112 FQSSCEYDNLTVFSKIGDSFKSQ----GVFCGSKLPPVILSEGNALRIEFHSDNSVQKSG 167
++ Y T F +I D + G+F GS LPP I+S N L ++F SD +SG
Sbjct: 166 -EAIGNY--YTDFLEIRDGGYEKSPLLGIFYGSNLPPTIISHSNKLWLKFKSDQIDTRSG 222
Query: 168 FSAFFFTDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGGCKYEITAPN 227
FSA++ D GC +T +
Sbjct: 223 FSAYW----------------------------------------DGSSTGCGGNLTTSS 242
Query: 228 GVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVVMYDGDSPDS 287
G +PN+P Y EC W ++ G +L F++F LE H C D++ +YDG S +S
Sbjct: 243 GTFISPNYPMPYYHSSECYWWLKSSHGSAFELEFKDFHLEHHPNCTLDYLAVYDGPSSNS 302
Query: 288 LTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATH 328
L + CG + P I + + +++ ++D Q +GF A +
Sbjct: 303 HLLTQLCGDEKPPLIRSSGDSMFIKLRTDEGQQGRGFKAEY 343
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/269 (28%), Positives = 111/269 (41%), Gaps = 45/269 (16%)
Query: 59 CGGILKHSNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEY 118
CG IL S GT+ SP P++Y C W I+ P + I L F F +E F +C
Sbjct: 1 CGEILTESTGTIQSPGHPNVYPHGINCTWHILVQPNHLIHLMFETFHLE----FHYNCTN 56
Query: 119 DNLTVFSKIGDSFKSQGVFCGSKLPPVILSEGNALRIEFHSDNSVQKSGFSAFFFTDKDE 178
D L V+ DS S G +CG +PP + S GN+L + F +D+ + GF + E
Sbjct: 57 DYLEVYDT--DSETSLGRYCGKSIPPSLTSSGNSLMLVFVTDSDLAYEGFLINY-----E 109
Query: 179 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGGCKYEITAPNGVIKTPNHPDY 238
++ C + + +G++
Sbjct: 110 AISAATACLQDYTDDLGTFTSPNFPNNYP------------------------------- 138
Query: 239 YPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAY-DHVVMYDGDSPDSLTLGRFCGIK 297
+ ECI+ T G I + F F LE Y D + + DG S LG F G
Sbjct: 139 --NNWECIYRITVRTGQLIAVHFTNFSLEEAIGNYYTDFLEIRDGGYEKSPLLGIFYGSN 196
Query: 298 LPYPIITGSNQLYMMFKSDASVQRKGFIA 326
LP II+ SN+L++ FKSD R GF A
Sbjct: 197 LPPTIISHSNKLWLKFKSDQIDTRSGFSA 225
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 112/268 (41%), Gaps = 50/268 (18%)
Query: 58 ACGGILKHSNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCE 117
CGG L S+GT SP++P Y + C W + + L F F +E +C
Sbjct: 233 GCGGNLTTSSGTFISPNYPMPYYHSSECYWWLKSSHGSAFELEFKDFHLE----HHPNCT 288
Query: 118 YDNLTVFSKIGDSFKSQGVFCGSKLPPVILSEGNALRIEFHSDNSVQKSGFSAFFFTDKD 177
D L V+ + CG + PP+I S G+++ I+ +D Q GF A +
Sbjct: 289 LDYLAVYDGPSSNSHLLTQLCGDEKPPLIRSSGDSMFIKLRTDEGQQGRGFKAEY----- 343
Query: 178 ECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGGCKYEITAPNGVIKTPNHPD 237
+ C N + + G++++ +P+
Sbjct: 344 ---------RQTCENVV---------------------------IVNQTYGILESIGYPN 367
Query: 238 YYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVVMYDGDSPDSLTLGRFCGIK 297
Y + C W T G+ + F F+LE H C+ D++ +YDG +GR+CG+
Sbjct: 368 PYSENQHCNWTIRATTGNTVNYTFLAFDLEHHINCSTDYLELYDGPR----QMGRYCGVD 423
Query: 298 LPYPIITGSNQLYMMFKSDASVQR-KGF 324
LP P T S++L ++ +D +R KGF
Sbjct: 424 LPPPGSTTSSKLQVLLLTDGVGRREKGF 451
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 219 CKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVV 278
C +T G I++P HP+ YP C WH P H I L+F+ F LE H C D++
Sbjct: 1 CGEILTESTGTIQSPGHPNVYPHGINCTWHILVQPNHLIHLMFETFHLEFHYNCTNDYLE 60
Query: 279 MYDGDSPDSLTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATH 328
+YD DS S LGR+CG +P + + N L ++F +D+ + +GF+ +
Sbjct: 61 VYDTDSETS--LGRYCGKSIPPSLTSSGNSLMLVFVTDSDLAYEGFLINY 108
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 62 ILKHSNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNL 121
I+ + G L S +P+ Y +N+ C W I A ++ F FD+E +C D L
Sbjct: 352 IVNQTYGILESIGYPNPYSENQHCNWTIRATTGNTVNYTFLAFDLE----HHINCSTDYL 407
Query: 122 TVFSKIGDSFKSQGVFCGSKLPPVILSEGNALRIEFHSDN-SVQKSGFSAFFF 173
++ D + G +CG LPP + + L++ +D ++ GF +F
Sbjct: 408 ELY----DGPRQMGRYCGVDLPPPGSTTSSKLQVLLLTDGVGRREKGFQMQWF 456
>pdb|1SZB|A Chain A, Crystal Structure Of The Human Mbl-Associated Protein 19
(Map19)
pdb|1SZB|B Chain B, Crystal Structure Of The Human Mbl-Associated Protein 19
(Map19)
Length = 170
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 79/163 (48%), Gaps = 22/163 (13%)
Query: 68 GTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKI 127
G L SP FP Y ++ W + APP YR+ L FTHFD+E ++L CEYD F K+
Sbjct: 13 GRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLELSHL----CEYD----FVKL 64
Query: 128 GDSFKSQGVFCGS------KLP--PVILSEGNALRIEFHSDNSVQK--SGFSAFFFT-DK 176
K CG + P S G++L I F SD S +K +GF AF+ D
Sbjct: 65 SSGAKVLATLCGQESTDTERAPGKDTFYSLGSSLDITFRSDYSNEKPFTGFEAFYAAEDI 124
Query: 177 DECMTNNG---GCQHECRNTIGSYICSCHNGYTLLENGHDCKE 216
DEC G C H C N +G + CSC GY L N C E
Sbjct: 125 DECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 167
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 228 GVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVVMYDGDSPDS 287
G + +P P Y + +E W T PG+R++L F F+LE C YD V + G +
Sbjct: 13 GRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLELSHLCEYDFVKLSSG----A 68
Query: 288 LTLGRFCG 295
L CG
Sbjct: 69 KVLATLCG 76
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 12 DECAL---EDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 49
DEC + E C+H C N LGG+ CSC+ GY LH + + C
Sbjct: 125 DECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTC 165
>pdb|2QQO|A Chain A, Crystal Structure Of The A2b1b2 Domains From Human
Neuropilin-2
pdb|2QQO|B Chain B, Crystal Structure Of The A2b1b2 Domains From Human
Neuropilin-2
Length = 460
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 64/126 (50%), Gaps = 2/126 (1%)
Query: 59 CGGILKHSNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLF--QSSC 116
C NGT+ SP FP+ Y N C + I+A P+ I L F FD+E + L + C
Sbjct: 8 CSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPLQVGEGDC 67
Query: 117 EYDNLTVFSKIGDSFKSQGVFCGSKLPPVILSEGNALRIEFHSDNSVQKSGFSAFFFTDK 176
+YD L ++ I G +CG+K P + S L + FH+D +V K GFSA ++
Sbjct: 68 KYDWLDIWDGIPHVGPLIGKYCGTKTPSELRSSTGILSLTFHTDMAVAKDGFSARYYLVH 127
Query: 177 DECMTN 182
E + N
Sbjct: 128 QEPLEN 133
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 219 CKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELE--PHQT----C 272
C T+PNG I++P P+ YP +C + P I L F F+LE P Q C
Sbjct: 8 CSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPLQVGEGDC 67
Query: 273 AYDHVVMYDGDSPDSLTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATH 328
YD + ++DG +G++CG K P + + + L + F +D +V + GF A +
Sbjct: 68 KYDWLDIWDGIPHVGPLIGKYCGTKTPSELRSSTGILSLTFHTDMAVAKDGFSARY 123
>pdb|2WNO|A Chain A, X-Ray Structure Of Cub_c Domain From Tsg-6
Length = 149
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 54/106 (50%)
Query: 219 CKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVV 278
C T P + K+P P+ Y + C WH G RI L F +F+LE C D+V
Sbjct: 7 CGGVFTDPKQIFKSPGFPNEYEDNQICYWHIRLKYGQRIHLSFLDFDLEDDPGCLADYVE 66
Query: 279 MYDGDSPDSLTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGF 324
+YD +GR+CG +LP II+ N + + F SDASV GF
Sbjct: 67 IYDSYDDVHGFVGRYCGDELPDDIISTGNVMTLKFLSDASVTAGGF 112
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 59 CGGILKHSNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEY 118
CGG+ SP FP+ Y N+ C W I RI L+F FD+E + C
Sbjct: 7 CGGVFTDPKQIFKSPGFPNEYEDNQICYWHIRLKYGQRIHLSFLDFDLEDD----PGCLA 62
Query: 119 DNLTVFSKIGDSFKSQGVFCGSKLPPVILSEGNALRIEFHSDNSVQKSGF 168
D + ++ D G +CG +LP I+S GN + ++F SD SV GF
Sbjct: 63 DYVEIYDSYDDVHGFVGRYCGDELPDDIISTGNVMTLKFLSDASVTAGGF 112
>pdb|2QQM|A Chain A, Crystal Structure Of The A2b1b2 Domains From Human
Neuropilin-1
Length = 450
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 6/118 (5%)
Query: 219 CKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQT------C 272
C T P+GVIK+P P+ YP+ EC + I L F+ F+LEP C
Sbjct: 11 CSQNYTTPSGVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLEPDSNPPGGMFC 70
Query: 273 AYDHVVMYDGDSPDSLTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATHTT 330
YD + ++DG +GR+CG K P I + S L M+F +D+++ ++GF A ++
Sbjct: 71 RYDRLEIWDGFPDVGPHIGRYCGQKTPGRIRSSSGILSMVFYTDSAIAKEGFSANYSV 128
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 67 NGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNN-----LFQSSCEYDNL 121
+G + SP FP+ Y + C + + AP I L F FD+E ++ +F C YD L
Sbjct: 19 SGVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLEPDSNPPGGMF---CRYDRL 75
Query: 122 TVFSKIGDSFKSQGVFCGSKLPPVILSEGNALRIEFHSDNSVQKSGFSA 170
++ D G +CG K P I S L + F++D+++ K GFSA
Sbjct: 76 EIWDGFPDVGPHIGRYCGQKTPGRIRSSSGILSMVFYTDSAIAKEGFSA 124
>pdb|1NZI|A Chain A, Crystal Structure Of The Cub1-Egf Interaction Domain Of
Complement Protease C1s
pdb|1NZI|B Chain B, Crystal Structure Of The Cub1-Egf Interaction Domain Of
Complement Protease C1s
Length = 159
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 78/159 (49%), Gaps = 20/159 (12%)
Query: 68 GTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKI 127
G + SP++P Y W+I P Y I L FTH DIE +C YD++ + S
Sbjct: 6 GEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIE----LSENCAYDSVQIIS-- 59
Query: 128 GDSFKSQGVFCGSKL-----PPVILS---EGNALRIEFHSD--NSVQKSGFSAFFF-TDK 176
GD+ +G CG + P++ N L++ F SD N + +GF+A++ TD
Sbjct: 60 GDT--EEGRLCGQRSSNNPHSPIVEEFQVPYNKLQVIFKSDFSNEERFTGFAAYYVATDI 117
Query: 177 DECMT-NNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 214
+EC + C H C N IG Y CSC Y L ++ +C
Sbjct: 118 NECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNC 156
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 58/113 (51%), Gaps = 14/113 (12%)
Query: 228 GVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVVMYDGDSPDS 287
G I +PN+P YPS+ E W G+ I L F ++E + CAYD V + GD+ +
Sbjct: 6 GEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIELSENCAYDSVQIISGDTEE- 64
Query: 288 LTLGRFCGIKL---PY-PII----TGSNQLYMMFKSDASVQRK--GFIATHTT 330
GR CG + P+ PI+ N+L ++FKSD S + + GF A +
Sbjct: 65 ---GRLCGQRSSNNPHSPIVEEFQVPYNKLQVIFKSDFSNEERFTGFAAYYVA 114
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 18/32 (56%)
Query: 18 DHGCEHTCKNILGGYECSCKIGYELHSDGKIC 49
D C H C N +GGY CSC Y LH D K C
Sbjct: 125 DVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNC 156
>pdb|3POB|A Chain A, Crystal Structure Of Masp-1 Cub2 Domain In Complex With
The Collagen- Like Domain Of Mbl
pdb|3POE|A Chain A, Crystal Structure Of The Masp-1 Cub2 Domain Bound To Ca2+
pdb|3POF|A Chain A, Crystal Structure Of Masp-1 Cub2 Domain Bound To Ca2+
pdb|3POF|B Chain B, Crystal Structure Of Masp-1 Cub2 Domain Bound To Ca2+
pdb|3POG|A Chain A, Crystal Structure Of The Masp-1 Cub2 Domain Bound To Ca2+
pdb|3POG|B Chain B, Crystal Structure Of The Masp-1 Cub2 Domain Bound To Ca2+
pdb|3POG|C Chain C, Crystal Structure Of The Masp-1 Cub2 Domain Bound To Ca2+
pdb|3POI|A Chain A, Crystal Structure Of Masp-1 Cub2 Domain Bound To
Methylamine
pdb|3POI|B Chain B, Crystal Structure Of Masp-1 Cub2 Domain Bound To
Methylamine
pdb|3POJ|A Chain A, Crystal Structure Of Masp-1 Cub2 Domain Bound To
Ethylamine
pdb|3POJ|B Chain B, Crystal Structure Of Masp-1 Cub2 Domain Bound To
Ethylamine
Length = 115
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 224 TAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQE-FELE--PHQTCAYDHVVMY 280
T G I +P++P+ YP EC + G + L F++ F++E P C YD++ +
Sbjct: 10 TQRTGTITSPDYPNPYPKSSECSYTIDLEEGFMVTLQFEDIFDIEDHPEVPCPYDYIKIK 69
Query: 281 DGDSPDSLTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGF 324
G S G FCG K P PI T S+ + ++F+SD S + +G+
Sbjct: 70 AG----SKVWGPFCGEKSPEPISTQSHSIQILFRSDNSGENRGW 109
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 7/110 (6%)
Query: 60 GGILKHSNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTH-FDIEGNNLFQSSCEY 118
G + GT+TSP +P+ Y K+ C + I + ++L F FDIE + + C Y
Sbjct: 6 GNLFTQRTGTITSPDYPNPYPKSSECSYTIDLEEGFMVTLQFEDIFDIEDHP--EVPCPY 63
Query: 119 DNLTVFSKIGDSFKSQGVFCGSKLPPVILSEGNALRIEFHSDNSVQKSGF 168
D + KI K G FCG K P I ++ ++++I F SDNS + G+
Sbjct: 64 D----YIKIKAGSKVWGPFCGEKSPEPISTQSHSIQILFRSDNSGENRGW 109
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 174 TDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCK-------EGGCKYEITAP 226
T ++ C NNGGC +C+ G+ C+CH GY L E+G C+ EG C T
Sbjct: 1 TGEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNS 60
Query: 227 NGVIKTPNHPDY--YPSKREC 245
G + Y P +R C
Sbjct: 61 EGAFQCWCEAGYELRPDRRSC 81
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 12 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 49
+ C + + GC C+ I G +C+C GY L DG+ C
Sbjct: 4 ENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTC 41
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 11 FDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 49
+ECA E + C C N G ++C C+ GYEL D + C
Sbjct: 44 VNECAEEGY-CSQGCTNSEGAFQCWCEAGYELRPDRRSC 81
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 176 KDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKE 216
K+ C NNGGC H C + +Y C+C G+ + N H C +
Sbjct: 347 KNRCGDNNGGCTHLCLPSGQNYTCACPTGFRKI-NSHACAQ 386
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 175 DKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGG 218
D +EC G C C N+ G++ C C GY L + CK G
Sbjct: 43 DVNEC-AEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALG 85
>pdb|1APQ|A Chain A, Structure Of The Egf-Like Module Of Human C1r, Nmr, 19
Structures
Length = 53
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Query: 175 DKDECMTNNGG--------CQHECRNTIGSYICSCHNGYTLLENGHDCK 215
D DEC + + CQH C N +G Y CSC GY L E+ H C+
Sbjct: 3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQ 51
Score = 39.3 bits (90), Expect = 0.003, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 21 CEHTCKNILGGYECSCKIGYELHSDGKIC 49
C+H C N +GGY CSC+ GYEL D C
Sbjct: 22 CQHLCHNYVGGYFCSCRPGYELQEDRHSC 50
>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6
Length = 616
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 179 CMTNNGGCQHECRNTIGS--YICSCHNGYTLLENGHDCKEGGCKYEITA 225
C +NGGC H C + Y C+C G LLENG CK+G + + A
Sbjct: 267 CGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLA 315
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 14 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICV 50
CA E+ GC H C G C+C IG+EL SD K C+
Sbjct: 573 CAEENGGCSHLCLYRPQGLRCACPIGFELISDMKTCI 609
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 14/76 (18%)
Query: 14 CALEDHGCEHTC--KNILGGYECSCKIGYELHSDGKICVGSVKARDACGGILKHSNGT-- 69
C +++ GC H C + Y+C+C G +L +GK C +D +L + T
Sbjct: 267 CGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTC------KDGATELLLLARRTDL 320
Query: 70 ----LTSPSFPDLYIK 81
L +P F D+ ++
Sbjct: 321 RRISLDTPDFTDIVLQ 336
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 179 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 214
C NGGC H C C+C G+ L+ + C
Sbjct: 573 CAEENGGCSHLCLYRPQGLRCACPIGFELISDMKTC 608
>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2
pdb|3S94|B Chain B, Crystal Structure Of Lrp6-E1e2
Length = 619
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 179 CMTNNGGCQHECRNTIGS--YICSCHNGYTLLENGHDCKEGGCKYEITA 225
C +NGGC H C + Y C+C G LLENG CK+G + + A
Sbjct: 275 CGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLA 323
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 14 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICV 50
CA E+ GC H C G C+C IG+EL SD K C+
Sbjct: 581 CAEENGGCSHLCLYRPQGLRCACPIGFELISDMKTCI 617
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 14/76 (18%)
Query: 14 CALEDHGCEHTC--KNILGGYECSCKIGYELHSDGKICVGSVKARDACGGILKHSNGT-- 69
C +++ GC H C + Y+C+C G +L +GK C +D +L + T
Sbjct: 275 CGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTC------KDGATELLLLARRTDL 328
Query: 70 ----LTSPSFPDLYIK 81
L +P F D+ ++
Sbjct: 329 RRISLDTPDFTDIVLQ 344
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 179 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 214
C NGGC H C C+C G+ L+ + C
Sbjct: 581 CAEENGGCSHLCLYRPQGLRCACPIGFELISDMKTC 616
>pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Fab
Length = 316
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 179 CMTNNGGCQHECRNTIGS--YICSCHNGYTLLENGHDCKEGGCKYEITA 225
C +NGGC H C + Y C+C G LLENG CK+G + + A
Sbjct: 267 CGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLA 315
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 14 CALEDHGCEHTC--KNILGGYECSCKIGYELHSDGKIC 49
C +++ GC H C + Y+C+C G +L +GK C
Sbjct: 267 CGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTC 304
>pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Dkk1 Peptide
pdb|3SOV|A Chain A, The Structure Of A Beta Propeller Domain In Complex With
Peptide S
Length = 318
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 179 CMTNNGGCQHECRNTIGS--YICSCHNGYTLLENGHDCKEG 217
C +NGGC H C + Y C+C G LLENG CK+G
Sbjct: 270 CGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDG 310
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 14 CALEDHGCEHTC--KNILGGYECSCKIGYELHSDGKIC 49
C +++ GC H C + Y+C+C G +L +GK C
Sbjct: 270 CGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTC 307
>pdb|1SFP|A Chain A, Crystal Structure Of Acidic Seminal Fluid Protein (Asfp)
At 1.9 A Resolution: A Bovine Polypeptide From The
Spermadhesin Family
Length = 114
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 15/117 (12%)
Query: 59 CGGILKHSNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEY 118
CGGILK +G + + Y C+W I PP+Y + ++ + Q +C
Sbjct: 10 CGGILKEESGVIAT-----YYGPKTNCVWTIQMPPEYHVRVSIQY--------LQLNCNK 56
Query: 119 DNLTVFSKIGDSFKSQGVFCGSKLPPVILSEGNALRIEFHSDNSVQKSGFSAFFFTD 175
++L + + S + GS + S G+ + +++ + S + +F D
Sbjct: 57 ESLEIIDGLPGSPVLGKICEGSLMD--YRSSGSIMTVKYIREPEHPASFYEVLYFQD 111
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 10/68 (14%)
Query: 227 NGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVVMYDGDSPD 286
+GVI T YY K C+W P + +++ Q +L C + + + DG P
Sbjct: 18 SGVIAT-----YYGPKTNCVWTIQMPPEYHVRVSIQYLQL----NCNKESLEIIDG-LPG 67
Query: 287 SLTLGRFC 294
S LG+ C
Sbjct: 68 SPVLGKIC 75
>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
Length = 195
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 179 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 214
C +NG C C S +CSC GYTL +NG C
Sbjct: 84 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 119
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 14 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICV 50
C+L++ C+ C CSC GY L +GK C+
Sbjct: 84 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 120
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 173 FTDKDECMTNNGGCQHECRNTIGSYICSCHNGY 205
+ D D+C T+ Q +C++ +G Y C+C G+
Sbjct: 39 YKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGF 71
>pdb|2H9E|L Chain L, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
Length = 149
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 167 GFSAFFFTDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 214
G + FT K C +NG C C S +CSC GYTL +NG C
Sbjct: 33 GKNCELFTRK-LCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 79
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 14 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICV 50
C+L++ C+ C CSC GY L +GK C+
Sbjct: 44 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 80
>pdb|2GD4|L Chain L, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
pdb|2GD4|A Chain A, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
Length = 58
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 179 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 214
C +NG C C S +CSC GYTL +NG C
Sbjct: 5 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 40
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 14 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICV 50
C+L++ C+ C CSC GY L +GK C+
Sbjct: 5 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 41
>pdb|1O5D|L Chain L, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|2B7D|L Chain L, Factor Viia Inhibitors: Chemical Optimization, Preclinical
Pharmacokinetics, Pharmacodynamics, And Efficacy In A
Baboon Thrombosis Model
pdb|2F9B|L Chain L, Discovery Of Novel Heterocyclic Factor Viia Inhibitors
pdb|2FLB|L Chain L, Discovery Of A Novel Hydroxy Pyrazole Based Factor Ixa
Inhibitor
pdb|2FLR|L Chain L, Novel 5-azaindole Factor Viia Inhibitors
pdb|3ELA|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia Mutant In Complex With Soluble Tissue Factor
Length = 152
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 179 CMTNNGGCQHECRNTIGS-YICSCHNGYTLLENGHDC 214
C+ NGGC+ C + G+ C CH GY+LL +G C
Sbjct: 91 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 127
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 14 CALEDHGCEHTCKNILG-GYECSCKIGYELHSDGKICVGSVK 54
C E+ GCE C + G C C GY L +DG C +V+
Sbjct: 91 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVE 132
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 11 FDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC--VGSV 53
DEC D C C N+ GGY+C C+ G++L K C VGS+
Sbjct: 40 IDECQDPD-TCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSI 83
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 177 DECMTNNGGCQHECRNTIGSYICSCHNGYTLL 208
+EC+ NNGGC H C + Y C C +G+ L+
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLV 32
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 48/131 (36%), Gaps = 18/131 (13%)
Query: 175 DKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGGC--------KYEITAP 226
D DEC + C C N G Y C C G+ L + CK G ++E+
Sbjct: 39 DIDECQ-DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVR-- 95
Query: 227 NGVIKTPNHPDYYPSKRECIWHFTTTPGHRI-------KLVFQEFELEPHQTCAYDHVVM 279
+ + P+ R + T +RI +++ H +YD V+
Sbjct: 96 KMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS 155
Query: 280 YDGDSPDSLTL 290
D +PD L +
Sbjct: 156 RDIQAPDGLAV 166
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 12 DECALEDHGCEHTCKNILGGYECSCKIGYEL 42
+EC + GC H C ++ GYEC C G++L
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQL 31
>pdb|1SPP|A Chain A, The Crystal Structures Of Two Members Of The Spermadhesin
Family Reveal The Folding Of The Cub Domain
Length = 109
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 14/100 (14%)
Query: 219 CKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVV 278
C +T G I T P K EC+W P +++ + L TC ++V
Sbjct: 6 CGGRLTDDYGTIFTYKGP-----KTECVWTLQVDPKYKLLVSIPTLNL----TCGKEYVE 56
Query: 279 MYDGDSPDSLTLGRFC-GIKLPYPIITGSNQLYMMFKSDA 317
+ +G +P S +LG+FC G+ + + GS+ + + +K D+
Sbjct: 57 VLEG-APGSKSLGKFCEGLSI---LNRGSSGMTVKYKRDS 92
>pdb|1DAN|L Chain L, Complex Of Active Site Inhibited Human Blood Coagulation
Factor Viia With Human Recombinant Soluble Tissue Factor
pdb|1FAK|L Chain L, Human Tissue Factor Complexed With Coagulation Factor Viia
Inhibited With A Bpti-Mutant
pdb|1WQV|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Propylsulfonamide-D- Thr-Met-P-Aminobenzamidine
pdb|1WSS|L Chain L, Human Factor Viia-Tissue Factor In Complex With Peprid
Mimetic Inhibitor That Has Two Charge Groups In P2 And
P4
pdb|1WTG|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Biphenylalanine-Gln-P-
Aminobenzamidine
pdb|1WUN|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Trp-Gln-P-Aminobenzamidine
pdb|1WV7|L Chain L, Human Factor Viia-tissue Factor Complexed With
Ethylsulfonamide-d-5-propoxy-trp-gln-p-aminobenzamidine
pdb|2A2Q|L Chain L, Complex Of Active-Site Inhibited Human Coagulation Factor
Viia With Human Soluble Tissue Factor In The Presence Of
Ca2+, Mg2+, Na+, And Zn2+
pdb|2AEI|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
ViiaTISSUE FACTOR And
2-[[6-[3-(Aminoiminomethyl)phenoxy]-3,
5-Difluro-4-[(1-Methyl-3-
Phenylpropyl)amino]-2-Pyridinyl]oxy]-Benzoic Acid
pdb|2ZP0|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Benzylsulfonamide-D- Ile-Gln-P-Aminobenzamidine
pdb|2ZWL|L Chain L, Human Factor Viia-Tissue Factor Complexed With Highly
Selective Peptide Inhibitor
pdb|2ZZU|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-5-
(3-Carboxybenzyloxy)-Trp-Gln-P-Aminobenzamidine
Length = 152
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 174 TDKDE---CMTNNGGCQHECRNTIGS-YICSCHNGYTLLENGHDC 214
T KD+ C+ NGGC+ C + G+ C CH GY+LL +G C
Sbjct: 83 THKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 127
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 14 CALEDHGCEHTCKNILG-GYECSCKIGYELHSDGKICVGSVK 54
C E+ GCE C + G C C GY L +DG C +V+
Sbjct: 91 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVE 132
>pdb|3KL6|B Chain B, Discovery Of Tetrahydropyrimidin-2(1h)-One Derivative
Tak-44 Potent, Selective And Orally Active Factor Xa
Inhibitor
Length = 57
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 179 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 214
C +NG C C S +CSC GYTL +NG C
Sbjct: 7 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 42
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 14 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICV 50
C+L++ C+ C CSC GY L +GK C+
Sbjct: 7 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 43
>pdb|1FAX|L Chain L, Coagulation Factor Xa Inhibitor Complex
Length = 96
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 167 GFSAFFFTDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 214
G + FT K C +NG C C S +CSC GYTL +NG C
Sbjct: 35 GKNCELFTRK-LCSLDNGDCDQFCHEEQASVVCSCARGYTLADNGKAC 81
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 6 IRWFKFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICV 50
F C+L++ C+ C CSC GY L +GK C+
Sbjct: 38 CELFTRKLCSLDNGDCDQFCHEEQASVVCSCARGYTLADNGKACI 82
>pdb|2BOK|L Chain L, Factor Xa- Cation
pdb|2JKH|L Chain L, Factor Xa - Cation Inhibitor Complex
pdb|2VVC|K Chain K, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVC|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVU|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVV|L Chain L, Aminopyrrolidine-Related Triazole Factor Xa Inhibitor
pdb|2VWL|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWM|K Chain K, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWM|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWN|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWO|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2XBV|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBW|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBX|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBY|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC0|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC4|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC5|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
Length = 55
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 179 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 214
C +NG C C S +CSC GYTL +NG C
Sbjct: 4 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 39
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 14 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICV 50
C+L++ C+ C CSC GY L +GK C+
Sbjct: 4 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 40
>pdb|1EZQ|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFW|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|A Chain A, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|A Chain A, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|A Chain A, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|A Chain A, Crystal Structure Of Fxa In Complex With 45.
pdb|2BOH|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|B Chain B, Factor Xa Inhibitor Complex
pdb|2VH0|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic
Heterocyclic Motifs
pdb|2VH6|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|B Chain B, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
Length = 134
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 166 SGFSAFFFTDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 214
G + FT K C +NG C C S +CSC GYTL +NG C
Sbjct: 72 EGKNCELFTRK-LCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 119
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 14 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICV 50
C+L++ C+ C CSC GY L +GK C+
Sbjct: 84 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 120
>pdb|2Y5F|L Chain L, Factor Xa - Cation Inhibitor Complex
pdb|2Y5G|L Chain L, Factor Xa - Cation Inhibitor Complex
pdb|2Y5H|L Chain L, Factor Xa - Cation Inhibitor Complex
Length = 54
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 179 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 214
C +NG C C S +CSC GYTL +NG C
Sbjct: 3 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 38
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 14 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICV 50
C+L++ C+ C CSC GY L +GK C+
Sbjct: 3 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 39
>pdb|1Z6J|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
Viia/tissue Factor/pyrazinone Inhibitor
pdb|2AER|L Chain L, Crystal Structure Of Benzamidine-Factor ViiaSOLUBLE TISSUE
Factor Complex.
pdb|2FIR|L Chain L, Crystal Structure Of Dfpr-ViiaSTF
pdb|2C4F|L Chain L, Crystal Structure Of Factor Vii.Stf Complexed With
Pd0297121
pdb|2B8O|L Chain L, Crystal Structure Of Glu-gly-arg-chloromethyl
Ketone-factor Viia/soluble Tissue Factor Complex
pdb|2EC9|L Chain L, Crystal Structure Analysis Of Human Factor Viia , Souluble
Tissue Factor Complexed With Bcx-3607
pdb|3TH2|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH3|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH4|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
Length = 142
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 175 DKDECMTNNGGCQHECRNTIGS-YICSCHNGYTLLENGHDC 214
D+ C+ NGGC+ C + G+ C CH GY+LL +G C
Sbjct: 87 DQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 127
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 14 CALEDHGCEHTCKNILG-GYECSCKIGYELHSDGKICVGSVK 54
C E+ GCE C + G C C GY L +DG C +V+
Sbjct: 91 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVE 132
>pdb|1W0Y|L Chain L, Tf7a_3771 Complex
pdb|1W2K|L Chain L, Tf7a_4380 Complex
Length = 142
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 175 DKDECMTNNGGCQHECRNTIGS-YICSCHNGYTLLENGHDC 214
D+ C+ NGGC+ C + G+ C CH GY+LL +G C
Sbjct: 87 DQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 127
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 14 CALEDHGCEHTCKNILG-GYECSCKIGYELHSDGKICVGSVK 54
C E+ GCE C + G C C GY L +DG C +V+
Sbjct: 91 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVE 132
>pdb|2D1J|B Chain B, Factor Xa In Complex With The Inhibitor 2-[[4-[(5-
Chloroindol-2-Yl)sulfonyl]piperazin-1-Yl]
Carbonyl]thieno[3,2-B]pyridine N-Oxide
pdb|2P3F|L Chain L, Crystal Structure Of The Factor XaNAP5 COMPLEX
pdb|2EI6|B Chain B, Factor Xa In Complex With The Inhibitor (-)-Cis-N1-[(5-
Chloroindol-2-Yl)carbonyl]-N2-[(5-Methyl-4,5,6,7-
Tetrahydrothiazolo[5,4-C]pyridin-2-Yl)carbonyl]-1,2-
Cyclohexanediamine
pdb|2EI7|B Chain B, Factor Xa In Complex With The Inhibitor Trans-N1-[(5-
Chloroindol-2-Yl)carbonyl]-N2-[(5-Methyl-4,5,6,7-
Tetrahydrothiazolo[5,4-C]pyridin-2-Yl)carbonyl]-1,2-
Cyclohexanediamine
pdb|2EI8|B Chain B, Factor Xa In Complex With The Inhibitor (1s,2r,4s)-N1-[(5-
Chloroindol-2-Yl)carbonyl]-4-(N,N-Dimethylcarbamoyl)-N2-
[(5-Methyl-4,5,6,7-Tetrahydrothiazolo[5,
4-C]pyridin-2-Yl) Carbonyl]-1,2-Cyclohexanediamine
pdb|3IIT|B Chain B, Factor Xa In Complex With A Cis-1,2-Diaminocyclohexane
Derivative
pdb|3Q3K|B Chain B, Factor Xa In Complex With A Phenylenediamine Derivative
pdb|3TK5|B Chain B, Factor Xa In Complex With D102-4380
pdb|3TK6|B Chain B, Factor Xa In Complex With D46-5241
Length = 54
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 179 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 214
C +NG C C S +CSC GYTL +NG C
Sbjct: 5 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 40
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 14 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICV 50
C+L++ C+ C CSC GY L +GK C+
Sbjct: 5 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 41
>pdb|2BMG|A Chain A, Crystal Structure Of Factor Xa In Complex With 50
Length = 53
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 179 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 214
C +NG C C S +CSC GYTL +NG C
Sbjct: 4 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 39
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 14 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICV 50
C+L++ C+ C CSC GY L +GK C+
Sbjct: 4 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 40
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 177 DECMTNNGGCQHECRNTIGSYICSCHNGYTLL 208
+EC+ NNGGC H C + Y C C +G+ L+
Sbjct: 41 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLV 72
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 11 FDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC--VGSV 53
DEC D C C N+ GGY+C C+ G++L K C VGS+
Sbjct: 80 IDECQDPD-TCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSI 123
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 48/131 (36%), Gaps = 18/131 (13%)
Query: 175 DKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGGC--------KYEITAP 226
D DEC + C C N G Y C C G+ L + CK G ++E+
Sbjct: 79 DIDECQ-DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVR-- 135
Query: 227 NGVIKTPNHPDYYPSKRECIWHFTTTPGHRI-------KLVFQEFELEPHQTCAYDHVVM 279
+ + P+ R + T +RI +++ H +YD V+
Sbjct: 136 KMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS 195
Query: 280 YDGDSPDSLTL 290
D +PD L +
Sbjct: 196 RDIQAPDGLAV 206
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 12 DECALEDHGCEHTCKNILGGYECSCKIGYEL 42
+EC + GC H C ++ GYEC C G++L
Sbjct: 41 NECLDNNGGCSHVCNDLKIGYECLCPDGFQL 71
>pdb|1FJS|L Chain L, Crystal Structure Of The Inhibitor Zk-807834 (Ci-1031)
Complexed With Factor Xa
pdb|1V3X|B Chain B, Factor Xa In Complex With The Inhibitor
1-[6-Methyl-4,5,6,7-
Tetrahydrothiazolo(5,4-C)pyridin-2-Yl] Carbonyl-2-
Carbamoyl-4-(6-Chloronaphth-2-Ylsulphonyl)piperazine
pdb|2FZZ|L Chain L, Factor Xa In Complex With The Inhibitor 1-(3-Amino-1,2-
Benzisoxazol-5-Yl)-6-(2'-(((3r)-3-Hydroxy-1-
Pyrrolidinyl)
Methyl)-4-Biphenylyl)-3-(Trifluoromethyl)-1,4,5,6-
Tetrahydro-7h-Pyrazolo[3,4-C]pyridin-7-One
pdb|2G00|L Chain L, Factor Xa In Complex With The Inhibitor 3-(6-(2'-
((Dimethylamino)methyl)-4-Biphenylyl)-7-Oxo-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Pyrazolo[3,4-
C]pyridin-1-Yl)benzamide
pdb|2P93|L Chain L, Factor Xa In Complex With The Inhibitor
5-Chloro-N-(2-(4-(2-
Oxopyridin-1(2h)-Yl)benzamido)ethyl)thiophene-2-
Carboxamide
pdb|2P94|L Chain L, Factor Xa In Complex With The Inhibitor
3-Chloro-N-((1r,2s)-
2-(4-(2-Oxopyridin-1(2h)-Yl)benzamido)cyclohexyl)-1h-
Indole-6-Carboxamide
pdb|2P95|L Chain L, Factor Xa In Complex With The Inhibitor
5-Chloro-N-((1r,2s)-
2-(4-(2-Oxopyridin-1(2h)-Yl)benzamido) Cyclopentyl)
Thiophene-2-Carboxamide
pdb|2P16|L Chain L, Factor Xa In Complex With The Inhibitor Apixaban (Bms-
562247) Aka 1-(4-Methoxyphenyl)-7-Oxo-6-(4-(2-Oxo-1-
Piperidinyl)phenyl)-4,5,6,7-Tetrahydro-1h-Pyrazolo[3, 4-
C]pyridine-3-Carboxamide
pdb|2P3U|A Chain A, Crystal Structure Of Human Factor Xa Complexed With 3-
Chloro-N-(4-Chloro-2-{[(5-Chloropyridin-2-Yl)
Amino]carbonyl}-6-Methoxyphenyl)-4-[(1-Methyl-1h-
Imidazol- 2-Yl)methyl]thiophene-2-Carboxamide {pfizer
320663}
pdb|2P3T|A Chain A, Crystal Structure Of Human Factor Xa Complexed With 3-
Chloro-4-(2-Methylamino-Imidazol-1-Ylmethyl)-Thiophene-
2- Carboxylic Acid [4-Chloro-2-(5-Chloro-Pyridin-2-
Ylcarbamoyl)-6-Methoxy-Phenyl]-Amide
pdb|3CEN|L Chain L, Factor Xa In Complex With The Inhibitor
N-(2-(((5-Chloro-2- Pyridinyl)
Amino)sulfonyl)phenyl)-4-(2-Oxo-1(2h)-
Pyridinyl)benzamide
pdb|3CS7|L Chain L, Factor Xa In Complex With The Inhibitor
1-(4-Methoxyphenyl)-
6-(4-(1-(Pyrrolidin-1-Ylmethyl)cyclopropyl)phenyl)-3-
(Trifluoromethyl)-5,6-Dihydro-1h-Pyrazolo[3,4-C]pyridin-
7(4h)-One
pdb|3FFG|L Chain L, Factor Xa In Complex With The Inhibitor (R)-6-(2'-((3-
Hydroxypyrrolidin-1-Yl)methyl)biphenyl-4-Yl)-1-(3-(5-
Oxo-4, 5-Dihydro-1h-1,2,4-Triazol-3-Yl)phenyl)-3-
(Trifluoromethyl)-5,6-Dihydro-1h-Pyrazolo[3,4-C]pyridin-
7(4h)-One
pdb|3KQB|L Chain L, Factor Xa In Complex With The Inhibitor N-(3-Fluoro-2'-
(Methylsulfonyl)biphenyl-4-Yl)-1-(3-(5-Oxo-4,
5-Dihydro-1h-
Triazol-3-Yl)phenyl)-3-(Trifluoromethyl)-1h-
Pyrazole-5-Car
pdb|3KQC|L Chain L, Factor Xa In Complex With The Inhibitor 6-(2'-
(Methylsulfon Biphenyl-4-Yl)-1-(3-(5-Oxo-4,5-Dihydro-1h-
1,2,4-Triazol-3- Phenyl)-3-(Trifluoromethyl)-5,6-
Dihydro-1h-Pyrazolo[3,4-C] 7(4h)-One
pdb|3KQD|L Chain L, Factor Xa In Complex With The Inhibitor 1-(3-(5-Oxo-4,5-
Dih 2,4-Triazol-3-Yl)phenyl)-6-(2'-(Pyrrolidin-1-
Ylmethyl)biph Yl)-3-(Trifluoromethyl)-5,6-Dihydro-
1h-Pyrazolo[3,4-C]pyri One
pdb|3KQE|L Chain L, Factor Xa In Complex With The Inhibitor 3-Methyl-1-(3-(5-
Ox Dihydro-1h-1,2,4-Triazol-3-Yl)phenyl)-6-(2'-
(Pyrrolidin-1- Biphenyl-4-Yl)-5,6-Dihydro-1h-
Pyrazolo[3,4-C]pyridin-7(4h)
pdb|3M36|L Chain L, Factor Xa In Complex With The Inhibitor 1-[3-(Aminomethyl)
Phenyl]-N-[3-Fluoro-2'-(Methylsulfonyl)biphenyl-4-Yl]-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc423)
pdb|3M37|L Chain L, Factor Xa In Complex With The Inhibitor 1-[2-(Aminomethyl)
Phenyl]-N-(3-Fluoro-2'-Sulfamoylbiphenyl-4-Yl)-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc602)
pdb|1Z6E|L Chain L, Factor Xa In Complex With The Inhibitor
1-(3'-Amino-1,2-Benzisoxazol-
5'-Yl)-N-(4-(2'-((Dimethylamino)methyl)-1h-Imidazol-1-
Yl)-2-
Fluorophenyl)-3-(Trifluoromethyl)-1h-Pyrazole-5-
Carboxamide (Razaxaban; Dpc906; Bms-561389)
Length = 52
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 179 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 214
C +NG C C S +CSC GYTL +NG C
Sbjct: 3 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 38
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 14 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICV 50
C+L++ C+ C CSC GY L +GK C+
Sbjct: 3 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 39
>pdb|2BQ6|A Chain A, Crystal Structure Of Factor Xa In Complex With 21
pdb|2BQ7|A Chain A, Crystal Structure Of Factor Xa In Complex With 43
pdb|2BQW|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound 45
Length = 52
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 179 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 214
C +NG C C S +CSC GYTL +NG C
Sbjct: 4 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 39
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 14 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICV 50
C+L++ C+ C CSC GY L +GK C+
Sbjct: 4 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 40
>pdb|1HCG|B Chain B, Structure Of Human Des(1-45) Factor Xa At 2.2 Angstroms
Resolution
Length = 51
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 179 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 214
C +NG C C S +CSC GYTL +NG C
Sbjct: 1 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 36
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 14 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICV 50
C+L++ C+ C CSC GY L +GK C+
Sbjct: 1 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 37
>pdb|1MQ5|L Chain L, Crystal Structure Of
3-chloro-n-[4-chloro-2-[[(4-chlorophenyl)
Amino]carbonyl]phenyl]-4-[(4-methyl-1-
piperazinyl)methyl]-2- Thiophenecarboxamide Complexed
With Human Factor Xa
pdb|1MQ6|L Chain L, Crystal Structure Of
3-Chloro-N-[4-Chloro-2-[[(5-Chloro-2-Pyridinyl)
Amino]carbonyl]-6-Methoxyphenyl]-4-[[(4,
5-Dihydro-2-Oxazolyl)
Methylamino]methyl]-2-Thiophenecarboxamide Complexed
With Human Factor Xa
pdb|2W26|B Chain B, Factor Xa In Complex With Bay59-7939
Length = 51
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 20/40 (50%)
Query: 179 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGG 218
C +NG C C S +CSC GYTL +NG C G
Sbjct: 3 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTG 42
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 14 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICV 50
C+L++ C+ C CSC GY L +GK C+
Sbjct: 3 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 39
>pdb|1P0S|L Chain L, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
Length = 138
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 167 GFSAFFFTDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 214
G + FT K C +NG C C S +CSC GYTL +NG C
Sbjct: 78 GKNCELFTRK-LCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 124
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 14 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICV 50
C+L++ C+ C CSC GY L +GK C+
Sbjct: 89 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 125
>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4
pdb|3V64|D Chain D, Crystal Structure Of Agrin And Lrp4
Length = 349
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 12 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 49
+ECA E + C C N G ++C C+ GYEL D + C
Sbjct: 2 NECAEEGY-CSQGCTNSEGAFQCWCEAGYELRPDRRSC 38
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 176 KDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 214
K+ C NNGGC H C + +Y C+C G+ + N H C
Sbjct: 304 KNRCGDNNGGCTHLCLPSGQNYTCACPTGFRKI-NSHAC 341
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 177 DECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGG 218
+EC G C C N+ G++ C C GY L + CK G
Sbjct: 2 NEC-AEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALG 42
>pdb|2RA0|L Chain L, X-Ray Structure Of Fxa In Complex With 7-Fluoroindazole
Length = 51
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 179 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 214
C +NG C C S +CSC GYTL +NG C
Sbjct: 2 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 37
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 14 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICV 50
C+L++ C+ C CSC GY L +GK C+
Sbjct: 2 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 38
>pdb|2PR3|B Chain B, Factor Xa Inhibitor
pdb|2Q1J|B Chain B, The Discovery Of Glycine And Related Amino Acid-Based
Factor Xa Inhibitors
pdb|2PHB|B Chain B, An Orally Efficacious Factor Xa Inhibitor
pdb|2W3I|B Chain B, Crystal Structure Of Fxa In Complex With 4,4-disubstituted
Pyrrolidine-1,2-dicarboxamide Inhibitor 2
pdb|2W3K|B Chain B, Crystal Structure Of Fxa In Complex With 4,4-Disubstituted
Pyrrolidine-1,2-Dicarboxamide Inhibitor 1
pdb|3LIW|B Chain B, Factor Xa In Complex With
(R)-2-(1-Adamantylcarbamoylamino)-
3-(3-Carbamidoyl-Phenyl)-N-Phenethyl-Propionic Acid
Amide
Length = 51
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 179 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 214
C +NG C C S +CSC GYTL +NG C
Sbjct: 2 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 37
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 14 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICV 50
C+L++ C+ C CSC GY L +GK C+
Sbjct: 2 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 38
>pdb|1IOE|L Chain L, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|L Chain L, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|L Chain L, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|L Chain L, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|L Chain L, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|L Chain L, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|L Chain L, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|L Chain L, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|L Chain L, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|L Chain L, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|L Chain L, Human Coagulation Factor Xa In Complex With M55192
pdb|1C5M|F Chain F, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|4A7I|A Chain A, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 96
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 167 GFSAFFFTDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 214
G + FT K C +NG C C S +CSC GYTL +NG C
Sbjct: 35 GKNCELFTRK-LCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 81
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 14 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICV 50
C+L++ C+ C CSC GY L +GK C+
Sbjct: 46 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 82
>pdb|1XKA|L Chain L, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|A Chain A, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|B Chain B, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1WU1|B Chain B, Factor Xa In Complex With The Inhibitor
4-[(5-Chloroindol-2-Yl)
Sulfonyl]-2-(2-Methylpropyl)-1-[[5-(Pyridin-4-Yl)
Pyrimidin-2- Yl]carbonyl]piperazine
Length = 95
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 167 GFSAFFFTDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 214
G + FT K C +NG C C S +CSC GYTL +NG C
Sbjct: 34 GKNCELFTRK-LCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 80
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 6 IRWFKFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICV 50
F C+L++ C+ C CSC GY L +GK C+
Sbjct: 37 CELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 81
>pdb|3ENS|A Chain A, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|C Chain C, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|A Chain A, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|C Chain C, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|C Chain C, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 94
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 167 GFSAFFFTDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 214
G + FT K C +NG C C S +CSC GYTL +NG C
Sbjct: 34 GKNCELFTRK-LCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 80
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 6 IRWFKFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICV 50
F C+L++ C+ C CSC GY L +GK C+
Sbjct: 37 CELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 81
>pdb|1KLI|L Chain L, Cofactor-And Substrate-Assisted Activation Of Factor Viia
pdb|1KLJ|L Chain L, Crystal Structure Of Uninhibited Factor Viia
Length = 69
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 179 CMTNNGGCQHECRNTIGS-YICSCHNGYTLLENGHDC 214
C+ NGGC+ C + G+ C CH GY+LL +G C
Sbjct: 8 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 44
>pdb|1G2L|B Chain B, Factor Xa Inhibitor Complex
pdb|1G2M|B Chain B, Factor Xa Inhibitor Complex
Length = 94
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 167 GFSAFFFTDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 214
G + FT K C +NG C C S +CSC GYTL +NG C
Sbjct: 33 GKNCELFTRK-LCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 79
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 6 IRWFKFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICV 50
F C+L++ C+ C CSC GY L +GK C+
Sbjct: 36 CELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 80
>pdb|1JBU|L Chain L, Coagulation Factor Vii Zymogen (Egf2PROTEASE) IN COMPLEX
WITH Inhibitory Exosite Peptide A-183
pdb|1YGC|L Chain L, Short Factor Viia With A Small Molecule Inhibitor
Length = 63
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 179 CMTNNGGCQHECRNTIGS-YICSCHNGYTLLENGHDC 214
C+ NGGC+ C + G+ C CH GY+LL +G C
Sbjct: 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 38
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 177 DECMTNNGGCQHECRNTIGSYICSCHNGYTLL 208
+EC+ NNGGC H C + Y C C +G+ L+
Sbjct: 313 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLV 344
Score = 34.3 bits (77), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 11 FDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC--VGSV 53
DEC D C C N+ GGY+C C+ G++L K C VGS+
Sbjct: 352 IDECQDPDT-CSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSI 395
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 12 DECALEDHGCEHTCKNILGGYECSCKIGYEL 42
+EC + GC H C ++ GYEC C G++L
Sbjct: 313 NECLDNNGGCSHVCNDLKIGYECLCPDGFQL 343
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 48/131 (36%), Gaps = 18/131 (13%)
Query: 175 DKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGGC--------KYEITAP 226
D DEC + C C N G Y C C G+ L + CK G ++E+
Sbjct: 351 DIDECQDPDT-CSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVR-- 407
Query: 227 NGVIKTPNHPDYYPSKRECIWHFTTTPGHRI-------KLVFQEFELEPHQTCAYDHVVM 279
+ + P+ R + T +RI +++ H +YD V+
Sbjct: 408 KMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS 467
Query: 280 YDGDSPDSLTL 290
D +PD L +
Sbjct: 468 RDIQAPDGLAV 478
>pdb|1W8B|L Chain L, Factor7 - 413 Complex
Length = 57
Score = 34.3 bits (77), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 179 CMTNNGGCQHECRNTIGS-YICSCHNGYTLLENGHDC 214
C+ NGGC+ C + G+ C CH GY+LL +G C
Sbjct: 4 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 40
>pdb|1QFK|L Chain L, Structure Of Human Factor Viia And Its Implications For
The Triggering Of Blood Coagulation
Length = 104
Score = 34.3 bits (77), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 174 TDKDE---CMTNNGGCQHECRNTIGS-YICSCHNGYTLLENGHDC 214
T KD+ C+ NGGC+ C + G+ C CH GY+LL +G C
Sbjct: 35 THKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 79
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 177 DECMTNNGGCQHECRNTIGSYICSCHNGYTLL 208
+EC+ NNGGC H C + Y C C +G+ L+
Sbjct: 295 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLV 326
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 7 RWFKFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC--VGSV 53
R DEC D C C N+ GGY+C C+ G++L K C VGS+
Sbjct: 330 RCEDIDECQDPDT-CSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSI 377
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 12 DECALEDHGCEHTCKNILGGYECSCKIGYEL 42
+EC + GC H C ++ GYEC C G++L
Sbjct: 295 NECLDNNGGCSHVCNDLKIGYECLCPDGFQL 325
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 48/131 (36%), Gaps = 18/131 (13%)
Query: 175 DKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGGC--------KYEITAP 226
D DEC + C C N G Y C C G+ L + CK G ++E+
Sbjct: 333 DIDECQDPDT-CSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVR-- 389
Query: 227 NGVIKTPNHPDYYPSKRECIWHFTTTPGHRI-------KLVFQEFELEPHQTCAYDHVVM 279
+ + P+ R + T +RI +++ H +YD V+
Sbjct: 390 KMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS 449
Query: 280 YDGDSPDSLTL 290
D +PD L +
Sbjct: 450 RDIQAPDGLAV 460
>pdb|1CVW|L Chain L, Crystal Structure Of Active Site-inhibited Human
Coagulation Factor Viia (des-gla)
pdb|1W7X|L Chain L, Factor7- 413 Complex
pdb|4ISI|L Chain L, Structure Of Factor Viia In Complex With The Inhibitor
(6s)-n-(4-
Carbamimidoylbenzyl)-1-chloro-3-(cyclobutylamino)-8,
8-diethyl-4-oxo-
4,6,7,8-tetrahydropyrrolo[1,2-a]pyrazine-6-carboxamide
Length = 55
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 179 CMTNNGGCQHECRNTIGS-YICSCHNGYTLLENGHDC 214
C+ NGGC+ C + G+ C CH GY+LL +G C
Sbjct: 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 38
>pdb|1DVA|L Chain L, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
pdb|1DVA|M Chain M, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
Length = 101
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 174 TDKDE---CMTNNGGCQHECRNTIGS-YICSCHNGYTLLENGHDC 214
T KD+ C+ NGGC+ C + G+ C CH GY+LL +G C
Sbjct: 42 THKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 86
>pdb|2PUQ|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia In Complex With Soluble Tissue Factor
Length = 94
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 174 TDKDE---CMTNNGGCQHECRNTIGS-YICSCHNGYTLLENGHDC 214
T KD+ C+ NGGC+ C + G+ C CH GY+LL +G C
Sbjct: 35 THKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 79
>pdb|2BZ6|L Chain L, Orally Available Factor7a Inhibitor
Length = 53
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 179 CMTNNGGCQHECRNTIGS-YICSCHNGYTLLENGHDC 214
C+ NGGC+ C + G+ C CH GY+LL +G C
Sbjct: 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 38
>pdb|1J9C|L Chain L, Crystal Structure Of Tissue Factor-Factor Viia Complex
Length = 95
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 174 TDKDE---CMTNNGGCQHECRNTIGS-YICSCHNGYTLLENGHDC 214
T KD+ C+ NGGC+ C + G+ C CH GY+LL +G C
Sbjct: 36 THKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 80
>pdb|1EMN|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, Minimized Average Structure
pdb|1EMO|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, 22 Structures
Length = 82
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 12 DECALEDHGCEHTCKNILGGYECSCKIGYE 41
DEC++ + TCKN++GG+EC+C+ G+E
Sbjct: 45 DECSVGNPCGNGTCKNVIGGFECTCEEGFE 74
>pdb|1AUT|L Chain L, Human Activated Protein C
Length = 114
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%)
Query: 7 RWFKFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICVGSVK 54
R F C+L++ GC H C +G CSC GY+L D C +VK
Sbjct: 50 REVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVK 97
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 179 CMTNNGGCQHECRNTIGSYICSCHNGYTL 207
C +NGGC H C +G CSC GY L
Sbjct: 57 CSLDNGGCTHYCLEEVGWRRCSCAPGYKL 85
>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8V|B Chain B, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8Z|A Chain A, Crystal Structure Of Lrp6-E3e4
Length = 623
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 11 FDECALEDHGCEHTCKNI-LGGYECSCKIGYELHSDGKIC 49
++ECA + C H C + +GG+ C C Y L++D + C
Sbjct: 270 WNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTC 309
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 177 DECMTNNGGCQHECRNT-IGSYICSCHNGYTLLENGHDC 214
+EC ++NG C H C +G ++C C Y+L + C
Sbjct: 271 NECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTC 309
>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56.
pdb|3S2K|B Chain B, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56
Length = 629
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 11 FDECALEDHGCEHTCKNI-LGGYECSCKIGYELHSDGKIC 49
++ECA + C H C + +GG+ C C Y L++D + C
Sbjct: 263 WNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTC 302
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 177 DECMTNNGGCQHECRNT-IGSYICSCHNGYTLLENGHDC 214
+EC ++NG C H C +G ++C C Y+L + C
Sbjct: 264 NECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTC 302
>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4
Length = 628
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 11 FDECALEDHGCEHTCKNI-LGGYECSCKIGYELHSDGKIC 49
++ECA + C H C + +GG+ C C Y L++D + C
Sbjct: 265 WNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTC 304
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 177 DECMTNNGGCQHECRNT-IGSYICSCHNGYTLLENGHDC 214
+EC ++NG C H C +G ++C C Y+L + C
Sbjct: 266 NECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTC 304
>pdb|3F6U|L Chain L, Crystal Structure Of Human Activated Protein C (Apc)
Complexed With Ppack
Length = 98
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%)
Query: 7 RWFKFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICVGSVK 54
R F C+L++ GC H C +G CSC GY+L D C +VK
Sbjct: 43 REVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVK 90
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 179 CMTNNGGCQHECRNTIGSYICSCHNGYTL 207
C +NGGC H C +G CSC GY L
Sbjct: 50 CSLDNGGCTHYCLEEVGWRRCSCAPGYKL 78
>pdb|2W2M|E Chain E, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr
pdb|2W2O|E Chain E, Pcsk9-deltac D374y Mutant Bound To Wt Egf-a Of Ldlr
pdb|2W2P|E Chain E, Pcsk9-Deltac D374a Mutant Bound To Wt Egf-A Of Ldlr
pdb|2W2Q|E Chain E, Pcsk9-Deltac D374h Mutant Bound To Wt Egf-A Of Ldlr
Length = 107
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 177 DECMTNNGGCQHECRNTIGSYICSCHNGYTLL 208
+EC+ NNGGC H C + Y C C +G+ L+
Sbjct: 30 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLV 61
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 7 RWFKFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 49
R DEC D C C N+ GGY+C C+ G++L K C
Sbjct: 65 RCEDIDECQDPDT-CSQLCVNLEGGYKCQCEEGFQLDPHTKAC 106
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 12 DECALEDHGCEHTCKNILGGYECSCKIGYEL 42
+EC + GC H C ++ GYEC C G++L
Sbjct: 30 NECLDNNGGCSHVCNDLKIGYECLCPDGFQL 60
>pdb|3KCG|L Chain L, Crystal Structure Of The Antithrombin-Factor Ixa-
Pentasaccharide Complex
Length = 59
Score = 33.1 bits (74), Expect = 0.25, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 179 CMTNNGGCQHECRNTI-GSYICSCHNGYTLLENGHDCK 215
C NG C+ C+N+ +CSC GY L EN C+
Sbjct: 5 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCE 42
>pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
pdb|1I0U|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
Length = 82
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 177 DECMTNNGGCQHECRNTIGSYICSCHNGYTLL 208
+EC+ NNGGC H C + Y C C +G+ L+
Sbjct: 3 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLV 34
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 7 RWFKFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 49
R DEC D C C N+ GGY+C C+ G++L K C
Sbjct: 38 RCEDIDECQDPDT-CSQLCVNLEGGYKCQCEEGFQLDPHTKAC 79
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 12 DECALEDHGCEHTCKNILGGYECSCKIGYEL 42
+EC + GC H C ++ GYEC C G++L
Sbjct: 3 NECLDNNGGCSHVCNDLKIGYECLCPDGFQL 33
>pdb|3BPS|E Chain E, Pcsk9:egf-a Complex
pdb|3GCX|E Chain E, Pcsk9:egfa (Ph 7.4)
Length = 83
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 177 DECMTNNGGCQHECRNTIGSYICSCHNGYTLL 208
+EC+ NNGGC H C + Y C C +G+ L+
Sbjct: 6 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLV 37
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 7 RWFKFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 49
R DEC D C C N+ GGY+C C+ G++L K C
Sbjct: 41 RCEDIDECQDPDT-CSQLCVNLEGGYKCQCEEGFQLDPHTKAC 82
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 12 DECALEDHGCEHTCKNILGGYECSCKIGYEL 42
+EC + GC H C ++ GYEC C G++L
Sbjct: 6 NECLDNNGGCSHVCNDLKIGYECLCPDGFQL 36
>pdb|1XFE|A Chain A, Solution Structure Of The La7-Egfa Pair From The Ldl
Receptor
Length = 83
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 177 DECMTNNGGCQHECRNTIGSYICSCHNGYTLL 208
+EC+ NNGGC H C + Y C C +G+ L+
Sbjct: 46 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLV 77
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 6 IRWFKFDECALEDHGCEHTCKNILGGYECSCKIGYEL 42
I+ +EC + GC H C ++ GYEC C G++L
Sbjct: 40 IKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQL 76
>pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Epidermal
Growth Factor-Like Domains, 20 Structures
Length = 80
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 177 DECMTNNGGCQHECRNTIGSYICSCHNGYTLL 208
+EC+ NNGGC H C + Y C C +G+ L+
Sbjct: 3 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLV 34
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 7 RWFKFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 49
R DEC D C C N+ GGY+C C+ G++L K C
Sbjct: 38 RCEDIDECQDPDT-CSQLCVNLEGGYKCQCEEGFQLDPHTKAC 79
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 12 DECALEDHGCEHTCKNILGGYECSCKIGYEL 42
+EC + GC H C ++ GYEC C G++L
Sbjct: 3 NECLDNNGGCSHVCNDLKIGYECLCPDGFQL 33
>pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr
Length = 107
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 7 RWFKFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 49
R DEC D C C N+ GGY+C C+ G++L K C
Sbjct: 65 RCEDIDECQDPDT-CSQLCVNLEGGYKCQCEEGFQLDPHTKAC 106
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 177 DECMTNNGGCQHECRNTIGSYICSCHNGYTLL 208
+EC+ NNGGC + C + Y C C +G+ L+
Sbjct: 30 NECLDNNGGCSYVCNDLKIGYECLCPDGFQLV 61
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 12 DECALEDHGCEHTCKNILGGYECSCKIGYEL 42
+EC + GC + C ++ GYEC C G++L
Sbjct: 30 NECLDNNGGCSYVCNDLKIGYECLCPDGFQL 60
>pdb|2WPH|E Chain E, Factor Ixa Superactive Triple Mutant
pdb|2WPI|E Chain E, Factor Ixa Superactive Double Mutant
pdb|2WPJ|E Chain E, Factor Ixa Superactive Triple Mutant, Nacl-Soaked
pdb|2WPK|E Chain E, Factor Ixa Superactive Triple Mutant, Ethylene
Glycol-Soaked
pdb|2WPL|E Chain E, Factor Ixa Superactive Triple Mutant, Edta-Soaked
pdb|2WPM|E Chain E, Factor Ixa Superactive Mutant, Egr-Cmk Inhibited
Length = 59
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 179 CMTNNGGCQHECRNTI-GSYICSCHNGYTLLENGHDCK 215
C NG C+ C+N+ +CSC GY L EN C+
Sbjct: 2 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCE 39
>pdb|1RFN|B Chain B, Human Coagulation Factor Ixa In Complex With P-Amino
Benzamidine
pdb|3LC3|B Chain B, Benzothiophene Inhibitors Of Factor Ixa
pdb|3LC3|D Chain D, Benzothiophene Inhibitors Of Factor Ixa
pdb|3LC5|B Chain B, Selective Benzothiophine Inhibitors Of Factor Ixa
Length = 57
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 179 CMTNNGGCQHECRNTI-GSYICSCHNGYTLLENGHDCK 215
C NG C+ C+N+ +CSC GY L EN C+
Sbjct: 3 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCE 40
>pdb|1KIG|L Chain L, Bovine Factor Xa
Length = 51
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 14 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICVGSVK 54
C+L++ GC+ C+ CSC GY L D K CV + +
Sbjct: 1 CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTER 41
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 179 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 214
C +NGGC CR CSC +GY L ++ C
Sbjct: 1 CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSC 36
>pdb|3F1S|B Chain B, Crystal Structure Of Protein Z Complexed With Protein
Z-Dependent Inhibitor
Length = 283
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 176 KDECM-TNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 214
K+EC GCQH C SY CSC GY L E+ C
Sbjct: 2 KNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQC 41
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Query: 20 GCEHTCKNILGGYECSCKIGYELHSDGKICVGSVKARDACG-GILKHSNGTLTSPSFPDL 78
GC+H C Y CSC GY L D K CV D C G+L +P DL
Sbjct: 12 GCQHFCLPGQESYTCSCAQGYRLGEDHKQCV----PHDQCACGVLTSEK---RAPDLQDL 64
>pdb|2ZCH|P Chain P, Crystal Structure Of Human Prostate Specific Antigen
Complexed With An Activating Antibody
pdb|2ZCK|P Chain P, Crystal Structure Of A Ternary Complex Between Psa, A
Substrat-Acyl Intermediate And An Activating Antibody
pdb|2ZCL|P Chain P, Crystal Structure Of Human Prostate Specific Antigen
Complexed With An Activating Antibody
pdb|3QUM|P Chain P, Crystal Structure Of Human Prostate Specific Antigen
(Psa) In Fab Sandwich With A High Affinity And A Pca
Selective Antibody
pdb|3QUM|Q Chain Q, Crystal Structure Of Human Prostate Specific Antigen
(Psa) In Fab Sandwich With A High Affinity And A Pca
Selective Antibody
Length = 237
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
Query: 28 ILGGYECSCKIGYELHSDGKICVGSVKARDACGGILKHSNGTLTSPSFPDLYIKNKTCI 86
I+GG+EC E HS + + + R CGG+L H LT+ I+NK+ I
Sbjct: 1 IVGGWEC------EKHSQPWQVLVASRGRAVCGGVLVHPQWVLTAAHC----IRNKSVI 49
>pdb|3GCW|E Chain E, Pcsk9:egfa(H306y)
Length = 83
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 7 RWFKFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 49
R DEC D C C N+ GGY+C C+ G++L K C
Sbjct: 41 RCEDIDECQDPDT-CSQLCVNLEGGYKCQCEEGFQLDPHTKAC 82
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 177 DECMTNNGGCQHECRNTIGSYICSCHNGYTLL 208
+EC+ NNGGC + C + Y C C +G+ L+
Sbjct: 6 NECLDNNGGCSYVCNDLKIGYECLCPDGFQLV 37
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 176 KDECM-TNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 214
K+EC GCQH C SY CSC GY L E+ C
Sbjct: 43 KNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQC 82
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 20 GCEHTCKNILGGYECSCKIGYELHSDGKICV 50
GC+H C Y CSC GY L D K CV
Sbjct: 53 GCQHFCLPGQESYTCSCAQGYRLGEDHKQCV 83
>pdb|1UZJ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|B Chain B, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|C Chain C, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZP|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Sm Bound Form Cbegf23 Domain Only.
pdb|1UZQ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Apo Form Cbegf23 Domain Only
Length = 162
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 170 AFFFTDKDECMTNNGGCQH-ECRNTIGSYICSCHNGYTLLENGHDC 214
D DEC G CQ +C NT GS+ C C GY L E+ C
Sbjct: 116 TVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 11 FDECALEDHGCEH-TCKNILGGYECSCKIGYELHSDGKIC 49
DEC C+ C N G ++C C GY L+ D ++C
Sbjct: 122 IDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
>pdb|1UZK|A Chain A, Integrin Binding Cbegf22-tb4-cbegf33 Fragment Of Human
Fibrillin-1, Ca Bound To Cbegf23 Domain Only
Length = 162
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 170 AFFFTDKDECMTNNGGCQH-ECRNTIGSYICSCHNGYTLLENGHDC 214
D DEC G CQ +C NT GS+ C C GY L E+ C
Sbjct: 116 TVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 11 FDECALEDHGCEH-TCKNILGGYECSCKIGYELHSDGKIC 49
DEC C+ C N G ++C C GY L+ D ++C
Sbjct: 122 IDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 11 FDECALEDHGCEHT--CKNILGGYECSCKIGY 40
DEC+L + CEH C N LG +EC C GY
Sbjct: 5 VDECSLGANPCEHAGKCINTLGSFECQCLQGY 36
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 175 DKDECMTNNGGCQH--ECRNTIGSYICSCHNGYT 206
D DEC C+H +C NT+GS+ C C GYT
Sbjct: 4 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYT 37
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 11 FDECALEDHGCEHT--CKNILGGYECSCKIGY 40
DEC+L + CEH C N LG +EC C GY
Sbjct: 3 VDECSLGANPCEHAGKCINTLGSFECQCLQGY 34
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 175 DKDECMTNNGGCQH--ECRNTIGSYICSCHNGYT 206
D DEC C+H +C NT+GS+ C C GYT
Sbjct: 2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYT 35
>pdb|1Z6C|A Chain A, Solution Structure Of An Egf Pair (Egf34) From Vitamin
K- Dependent Protein S
Length = 87
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 11 FDECALEDHGC-EHTCKNILGGYECSCKIGYELHSDGKIC 49
DEC+L+ C CKNI G +EC C GY + K C
Sbjct: 3 VDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSC 42
>pdb|1YCO|A Chain A, Crystal Structure Of A Branched-Chain Phosphotransacylase
From Enterococcus Faecalis V583
pdb|1YCO|B Chain B, Crystal Structure Of A Branched-Chain Phosphotransacylase
From Enterococcus Faecalis V583
Length = 279
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 8/47 (17%)
Query: 115 SCEYDNLTVF--SKIGDSFKSQGVFCGSKLPPVILSEGNALRIEFHS 159
+C Y +LT+F +K+G G G+K+P V+ S ++ +FHS
Sbjct: 225 NCLYKSLTLFGHAKVG------GTIVGTKVPVVLTSRSDSTESKFHS 265
>pdb|2W86|A Chain A, Crystal Structure Of Fibrillin-1 Domains
Cbegf9hyb2cbegf10, Calcium Saturated Form
Length = 147
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 175 DKDECMTNNGGCQHE-CRNTIGSYICSCHNGYTLLENGHDC 214
D DEC G C++ C NT GS+ C C +G TL G C
Sbjct: 106 DIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRIC 146
>pdb|3CFA|A Chain A, Anemonia Sulcata Red Fluorescent Protein Asrfp
pdb|3CFA|B Chain B, Anemonia Sulcata Red Fluorescent Protein Asrfp
pdb|3CFA|G Chain G, Anemonia Sulcata Red Fluorescent Protein Asrfp
pdb|3CFA|H Chain H, Anemonia Sulcata Red Fluorescent Protein Asrfp
Length = 167
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 26 KNILGGYECSCKIGYELHSDGKICVGSVKARDACGG 61
+N GG+E SC+I YE+ DG +C S+ A GG
Sbjct: 70 QNKAGGWEPSCEILYEV--DGVLCGQSLMALKCPGG 103
>pdb|1TD2|A Chain A, Crystal Structure Of The Pdxy Protein From Escherichia
Coli
pdb|1TD2|B Chain B, Crystal Structure Of The Pdxy Protein From Escherichia
Coli
Length = 287
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 23 HTCKNILGGYECSCKIG-YELHSDGKICVGSVKARDACGGILKH-SNGTLTSPSFPDLYI 80
HTC +L GY S + G + L ++ + +A+ C ++ H G + +P + ++
Sbjct: 74 HTCDAVLSGYLGSAEQGEHILGIVRQVKAANPQAKYFCDPVMGHPEKGCIVAPGVAEFHV 133
Query: 81 KNKTCIWEIVAP 92
++ +I+AP
Sbjct: 134 RHGLPASDIIAP 145
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.455
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,283,768
Number of Sequences: 62578
Number of extensions: 496623
Number of successful extensions: 1191
Number of sequences better than 100.0: 108
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 820
Number of HSP's gapped (non-prelim): 321
length of query: 330
length of database: 14,973,337
effective HSP length: 99
effective length of query: 231
effective length of database: 8,778,115
effective search space: 2027744565
effective search space used: 2027744565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)