Query psy8443
Match_columns 330
No_of_seqs 272 out of 2421
Neff 11.0
Searched_HMMs 46136
Date Fri Aug 16 18:59:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8443.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8443hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00431 CUB: CUB domain CUB d 99.9 7.7E-26 1.7E-30 161.9 13.8 110 219-328 1-110 (110)
2 cd00041 CUB CUB domain; extrac 99.9 5.9E-25 1.3E-29 158.1 14.5 112 219-330 1-113 (113)
3 smart00042 CUB Domain first fo 99.9 9.1E-24 2E-28 148.8 12.9 101 228-328 1-102 (102)
4 KOG4586|consensus 99.8 5.9E-21 1.3E-25 129.6 8.4 106 224-329 46-152 (156)
5 PF00431 CUB: CUB domain CUB d 99.7 2.9E-17 6.3E-22 117.3 11.7 110 59-172 1-110 (110)
6 cd00041 CUB CUB domain; extrac 99.7 3.3E-16 7.2E-21 112.4 13.8 111 59-173 1-112 (113)
7 smart00042 CUB Domain first fo 99.7 1.3E-15 2.9E-20 107.0 12.1 101 68-172 1-102 (102)
8 KOG4292|consensus 99.6 1.3E-14 2.9E-19 121.6 11.9 213 64-316 175-389 (454)
9 KOG4586|consensus 99.5 5.1E-14 1.1E-18 96.1 8.7 106 64-173 46-152 (156)
10 PF07645 EGF_CA: Calcium-bindi 99.3 5.7E-12 1.2E-16 71.7 4.3 40 10-49 1-42 (42)
11 KOG1214|consensus 99.3 1.3E-11 2.7E-16 109.9 7.9 49 4-52 727-777 (1289)
12 PF14670 FXa_inhibition: Coagu 99.3 5.6E-12 1.2E-16 67.9 3.1 36 14-49 1-36 (36)
13 PF14670 FXa_inhibition: Coagu 98.9 1E-09 2.2E-14 59.1 2.4 36 179-214 1-36 (36)
14 KOG4292|consensus 98.9 2E-08 4.4E-13 85.1 9.9 157 56-257 289-447 (454)
15 PF07645 EGF_CA: Calcium-bindi 98.8 3.1E-09 6.6E-14 60.4 3.1 40 175-214 1-42 (42)
16 PF12662 cEGF: Complement Clr- 98.6 3.3E-08 7.1E-13 47.6 1.9 22 31-52 1-22 (24)
17 PF12947 EGF_3: EGF domain; I 98.4 1.9E-07 4E-12 50.5 2.0 34 14-49 1-36 (36)
18 KOG1219|consensus 98.3 6.7E-07 1.5E-11 88.3 5.5 44 164-207 3928-3973(4289)
19 smart00179 EGF_CA Calcium-bind 98.2 1.3E-06 2.8E-11 48.9 2.9 36 10-49 1-38 (39)
20 PF12662 cEGF: Complement Clr- 98.1 1.2E-06 2.7E-11 42.1 1.5 21 196-216 1-21 (24)
21 PF05428 CRF-BP: Corticotropin 97.8 0.00031 6.7E-09 56.6 10.3 84 240-329 76-175 (311)
22 KOG1214|consensus 97.7 2.8E-05 6.1E-10 70.6 2.9 45 4-52 820-866 (1289)
23 PF05428 CRF-BP: Corticotropin 97.6 0.023 5.1E-07 46.1 17.9 164 80-298 76-269 (311)
24 cd00054 EGF_CA Calcium-binding 97.6 7.3E-05 1.6E-09 41.3 2.9 35 10-49 1-37 (38)
25 cd01475 vWA_Matrilin VWA_Matri 97.6 3.7E-05 8E-10 62.0 2.2 45 168-212 179-223 (224)
26 smart00181 EGF Epidermal growt 97.5 0.0001 2.2E-09 39.9 2.9 28 13-41 1-29 (35)
27 KOG4289|consensus 97.5 0.0028 6E-08 61.6 13.5 36 9-50 1237-1274(2531)
28 PF12947 EGF_3: EGF domain; I 97.5 6.9E-05 1.5E-09 40.5 1.9 29 179-207 1-31 (36)
29 KOG4260|consensus 97.5 5.1E-05 1.1E-09 59.9 1.5 37 6-42 231-269 (350)
30 smart00179 EGF_CA Calcium-bind 97.4 0.00015 3.3E-09 40.3 3.0 36 175-214 1-38 (39)
31 KOG4260|consensus 97.4 5.5E-05 1.2E-09 59.7 0.9 44 164-207 222-269 (350)
32 PF00008 EGF: EGF-like domain 97.3 0.0004 8.6E-09 36.6 3.2 23 19-41 4-29 (32)
33 KOG4289|consensus 97.2 0.0028 6.1E-08 61.6 10.3 46 162-207 1224-1270(2531)
34 PF02408 CUB_2: CUB-like domai 97.2 0.0065 1.4E-07 43.5 9.9 82 237-329 36-117 (120)
35 cd00053 EGF Epidermal growth f 96.9 0.001 2.2E-08 35.9 2.9 24 18-41 5-30 (36)
36 smart00181 EGF Epidermal growt 96.5 0.0024 5.3E-08 34.3 2.5 25 184-208 6-31 (35)
37 PF00008 EGF: EGF-like domain 96.4 0.0032 6.9E-08 33.1 2.3 21 187-207 9-30 (32)
38 KOG1217|consensus 96.4 0.012 2.5E-07 53.4 7.4 34 7-41 267-302 (487)
39 cd00054 EGF_CA Calcium-binding 96.3 0.0049 1.1E-07 33.7 2.9 31 176-207 2-34 (38)
40 PF12661 hEGF: Human growth fa 96.1 0.0046 1E-07 25.0 1.4 13 33-49 1-13 (13)
41 cd00053 EGF Epidermal growth f 95.1 0.021 4.6E-07 30.5 2.4 25 184-208 6-32 (36)
42 KOG1217|consensus 94.5 0.14 3E-06 46.4 7.3 46 165-210 257-306 (487)
43 PF12946 EGF_MSP1_1: MSP1 EGF 94.1 0.074 1.6E-06 28.5 2.7 28 20-49 6-36 (37)
44 PF09064 Tme5_EGF_like: Thromb 93.4 0.1 2.2E-06 27.2 2.4 25 185-210 7-31 (34)
45 KOG1219|consensus 93.1 0.07 1.5E-06 55.2 2.8 44 164-207 3890-3934(4289)
46 PF07974 EGF_2: EGF-like domai 92.6 0.15 3.2E-06 26.7 2.4 24 20-49 7-32 (32)
47 PF12946 EGF_MSP1_1: MSP1 EGF 91.3 0.25 5.4E-06 26.6 2.3 23 187-209 10-33 (37)
48 PHA03099 epidermal growth fact 85.9 0.79 1.7E-05 32.3 2.5 37 10-50 41-81 (139)
49 PF02408 CUB_2: CUB-like domai 78.6 21 0.00046 25.4 9.2 43 77-129 36-78 (120)
50 PHA02887 EGF-like protein; Pro 73.5 2.7 5.8E-05 29.2 1.9 36 11-50 83-122 (126)
51 KOG1215|consensus 69.5 3.8 8.3E-05 40.5 2.8 44 7-50 666-709 (877)
52 KOG1215|consensus 69.3 3.8 8.2E-05 40.6 2.7 42 175-216 669-710 (877)
53 PF06247 Plasmod_Pvs28: Plasmo 68.5 5.1 0.00011 30.7 2.6 47 2-50 30-86 (197)
54 PF00954 S_locus_glycop: S-loc 59.8 6.3 0.00014 27.6 1.7 29 11-41 77-107 (110)
55 PF05547 Peptidase_M6: Immune 59.7 48 0.001 31.5 7.6 29 248-280 359-388 (645)
56 PF01414 DSL: Delta serrate li 51.9 16 0.00035 22.6 2.3 22 20-41 29-59 (63)
57 PF01683 EB: EB module; Inter 51.3 12 0.00027 21.8 1.7 11 32-42 37-47 (52)
58 smart00051 DSL delta serrate l 45.3 11 0.00024 23.3 0.8 6 36-41 54-59 (63)
59 PF14380 WAK_assoc: Wall-assoc 44.9 32 0.00069 23.2 3.2 39 164-204 52-93 (94)
60 PF01826 TIL: Trypsin Inhibito 42.7 20 0.00043 21.2 1.7 17 34-51 35-51 (55)
61 KOG3516|consensus 42.5 16 0.00034 36.5 1.8 38 7-50 541-581 (1306)
62 PF13948 DUF4215: Domain of un 36.9 34 0.00074 19.6 2.0 22 35-62 3-24 (47)
63 PF00053 Laminin_EGF: Laminin 30.4 41 0.00089 19.2 1.7 20 24-49 12-31 (49)
64 PF10413 Rhodopsin_N: Amino te 29.5 8.7 0.00019 20.2 -1.1 17 224-240 13-30 (36)
65 PF06247 Plasmod_Pvs28: Plasmo 20.4 1.3E+02 0.0029 23.3 3.1 26 24-49 143-168 (197)
66 smart00180 EGF_Lam Laminin-typ 20.3 71 0.0015 18.1 1.3 15 31-49 17-31 (46)
No 1
>PF00431 CUB: CUB domain CUB domain entry Spermadhesins family entry Link to schematic domain picture by Peer Bork. ; InterPro: IPR000859 The CUB domain (for complement C1r/C1s, Uegf, Bmp1) is a structural motif of approximately 110 residues found almost exclusively in extracellular and plasma membrane-associated proteins, many of which are developmentally regulated [, ]. These proteins are involved in a diverse range of functions, including complement activation, developmental patterning, tissue repair, axon guidance and angiogenesis, cell signalling, fertilisation, haemostasis, inflammation, neurotransmission, receptor-mediated endocytosis, and tumour suppression [, ]. Many CUB-containing proteins are peptidases belonging to MEROPS peptidase families M12A (astacin) and S1A (chymotrypsin). Proteins containing a CUB domain include: Mammalian complement subcomponents C1s/C1r, which form the calcium-dependent complex C1, the first component of the classical pathway of the complement system. Cricetidae sp. (Hamster) serine protease Casp, which degrades type I and IV collagen and fibronectin in the presence of calcium. Mammalian complement-activating component of Ra-reactive factor (RARF), a protease that cleaves the C4 component of complement. Vertebrate enteropeptidase (3.4.21.9 from EC), a type II membrane protein of the intestinal brush border, which activates trypsinogen. Vertebrate bone morphogenic protein 1 (BMP-1), a protein which induces cartilage and bone formation and expresses metalloendopeptidase activity. Sea urchin blastula proteins BP10 and SpAN. Caenorhabditis elegans hypothetical proteins F42A10.8 and R151.5. Neuropilin (A5 antigen), a calcium-independent cell adhesion molecule that functions during the formation of certain neuronal circuits. Fibropellins I and III from Strongylocentrotus purpuratus (Purple sea urchin). Mammalian hyaluronate-binding protein TSG-6 (or PS4), a serum and growth factor induced protein. Mammalian spermadhesins. Xenopus laevis embryonic protein UVS.2, which is expressed during dorsoanterior development. Several of the above proteins consist of a catalytic domain together with several CUB domains interspersed by calcium-binding EGF domains. Some CUB domains appear to be involved in oligomerisation and/or recognition of substrates and binding partners. For example, in the complement proteases, the CUB domains mediate dimerisation and binding to collagen-like regions of target proteins (e.g. C1q for C1r/C1s). The structure of CUB domains consists of a beta-sandwich with a jelly-roll fold. Almost all CUB domains contain four conserved cysteines that probably form two disulphide bridges (C1-C2, C3-C4). The CUB1 domains of C1s and Map19 have calcium-binding sites [].; PDB: 1SFP_A 3KQ4_B 2WNO_A 2QQK_A 2QQL_A 2QQO_B 2QQM_A 3POJ_A 3POB_A 3POG_B ....
Probab=99.94 E-value=7.7e-26 Score=161.91 Aligned_cols=110 Identities=45% Similarity=0.874 Sum_probs=101.4
Q ss_pred CcceeecCcceeeCCCCCCCCCCCceeEEEEEeCCCCEEEEEEEEEeeCCCCCCCCceEEEEcCCCCCccceeeccCCCC
Q psy8443 219 CKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVVMYDGDSPDSLTLGRFCGIKL 298 (330)
Q Consensus 219 C~~~~~~~~g~i~sp~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~~~l~~~~~C~~d~l~i~~g~~~~~~~~~~~cg~~~ 298 (330)
|++.+....|.|.||+||..|+++..|.|+|+++++++|.|+|..|+|+....|..|+|.|++|....+..++++||...
T Consensus 1 Cg~~~~~~~g~i~Sp~yp~~y~~~~~C~w~i~~~~~~~I~l~f~~~~~~~~~~c~~d~l~v~~g~~~~~~~~~~~cg~~~ 80 (110)
T PF00431_consen 1 CGGRLTNNSGIISSPNYPSNYPSNSDCTWTITAPPGHRIRLTFLSFDLESSDSCCQDYLEVYDGNDESSPLLGRFCGSSP 80 (110)
T ss_dssp SEEEECSSEEEEESTTTTS-SSSSEEEEEEEE-STTEEEEEEEEEEEB--TTTSTSSEEEEESSSSTTSEEEEEESSSSC
T ss_pred CcCEEECCeEEEECCCCCCCCCCCCcEeEEEEecccceeeeccccccceeeeeecccceeEEeeccccceeeeeccCCcC
Confidence 67889999999999999999999999999999999999999999999998888999999999999888899999999888
Q ss_pred CCcEEecCCEEEEEEEeCCCCCCCCeEEEE
Q psy8443 299 PYPIITGSNQLYMMFKSDASVQRKGFIATH 328 (330)
Q Consensus 299 ~~~~~s~~~~~~v~f~s~~~~~~~GF~~~y 328 (330)
+..++|.++.|+|+|+++....++||+|+|
T Consensus 81 ~~~i~s~~~~l~i~f~s~~~~~~~gF~~~y 110 (110)
T PF00431_consen 81 PPSIISSSNSLFIRFHSDSSNSSRGFKATY 110 (110)
T ss_dssp CEEEEESSSEEEEEEEESSSSTTSEEEEEE
T ss_pred CccEEECCCEEEEEEEECCCCCCccEEEEC
Confidence 889999999999999999999999999998
No 2
>cd00041 CUB CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
Probab=99.93 E-value=5.9e-25 Score=158.12 Aligned_cols=112 Identities=46% Similarity=0.907 Sum_probs=104.5
Q ss_pred CcceeecC-cceeeCCCCCCCCCCCceeEEEEEeCCCCEEEEEEEEEeeCCCCCCCCceEEEEcCCCCCccceeeccCCC
Q psy8443 219 CKYEITAP-NGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVVMYDGDSPDSLTLGRFCGIK 297 (330)
Q Consensus 219 C~~~~~~~-~g~i~sp~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~~~l~~~~~C~~d~l~i~~g~~~~~~~~~~~cg~~ 297 (330)
|+..+... .|.|.||+||..|+++.+|.|+|+++++.+|.|+|..|+|+....|..|+|+||+|.......+.++||..
T Consensus 1 C~~~~~~~~~g~i~Sp~~p~~~~~~~~C~w~i~~~~g~~i~l~f~~~~l~~~~~C~~d~l~i~~g~~~~~~~~~~~Cg~~ 80 (113)
T cd00041 1 CGGTLTASTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLESSPNCSYDYLEIYDGPSTSSPLLGRFCGST 80 (113)
T ss_pred CCCEEccCCCeEEECCCCCCCCCCCCcEEEEEEcCCCCEEEEEEeCcccccCCCCCCcEEEEEcCCCCccccceeeECCC
Confidence 56677777 99999999999999999999999999999999999999999888899999999999877677899999999
Q ss_pred CCCcEEecCCEEEEEEEeCCCCCCCCeEEEEeC
Q psy8443 298 LPYPIITGSNQLYMMFKSDASVQRKGFIATHTT 330 (330)
Q Consensus 298 ~~~~~~s~~~~~~v~f~s~~~~~~~GF~~~y~~ 330 (330)
.+..++|+++.|+|+|+++....+.||++.|++
T Consensus 81 ~~~~~~s~~~~~~i~f~s~~~~~~~GF~~~y~~ 113 (113)
T cd00041 81 LPPPIISSGNSLTVRFRSDSSVTGRGFKATYSA 113 (113)
T ss_pred CCCCEEecCCEEEEEEEeCCCCCCCCEEEEEEC
Confidence 888899999999999999998899999999985
No 3
>smart00042 CUB Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein. This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Probab=99.91 E-value=9.1e-24 Score=148.82 Aligned_cols=101 Identities=48% Similarity=0.901 Sum_probs=92.4
Q ss_pred ceeeCCCCCCCCCCCceeEEEEEeCCCCEEEEEEEEEeeCCCCCCCCceEEEEcCCCCCccceeeccCCCCCC-cEEecC
Q psy8443 228 GVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVVMYDGDSPDSLTLGRFCGIKLPY-PIITGS 306 (330)
Q Consensus 228 g~i~sp~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~~~l~~~~~C~~d~l~i~~g~~~~~~~~~~~cg~~~~~-~~~s~~ 306 (330)
|.|.||+||..||++..|.|+|+++++.+|.|+|..|+|+....|..|+|+|++|......++.++||...+. .++|.+
T Consensus 1 G~i~Sp~yP~~y~~~~~C~w~i~~~~g~~i~l~f~~~~l~~~~~C~~d~l~i~~g~~~~~~~~~~~Cg~~~~~~~~~s~~ 80 (102)
T smart00042 1 GTITSPNYPQSYPNNLDCVWTIRAPPGYRIELQFTDFDLESSDNCEYDYVEIYDGPSASSPLLGRFCGSELPPPVISSSS 80 (102)
T ss_pred CEEeCCCCCcCCCCCCcEEEEEECCCCeEEEEEEEEEeccCCCCeeEeEEEEEeCCCCCCceeEEEecCcCCCCeEEcCC
Confidence 6899999999999999999999999999999999999999888899999999999876677788999998655 466779
Q ss_pred CEEEEEEEeCCCCCCCCeEEEE
Q psy8443 307 NQLYMMFKSDASVQRKGFIATH 328 (330)
Q Consensus 307 ~~~~v~f~s~~~~~~~GF~~~y 328 (330)
|.|+|.|+++....++||+|+|
T Consensus 81 n~~~i~f~s~~~~~~~GF~~~y 102 (102)
T smart00042 81 NSLTVTFVSDSSVQKRGFSARY 102 (102)
T ss_pred CEEEEEEEeCCCCCCCCeEEEC
Confidence 9999999999888889999987
No 4
>KOG4586|consensus
Probab=99.85 E-value=5.9e-21 Score=129.60 Aligned_cols=106 Identities=29% Similarity=0.621 Sum_probs=100.3
Q ss_pred ecCcceeeCCCCCCCCCCCceeEEEEEeCCCCEEEEEEEE-EeeCCCCCCCCceEEEEcCCCCCccceeeccCCCCCCcE
Q psy8443 224 TAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQE-FELEPHQTCAYDHVVMYDGDSPDSLTLGRFCGIKLPYPI 302 (330)
Q Consensus 224 ~~~~g~i~sp~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~-~~l~~~~~C~~d~l~i~~g~~~~~~~~~~~cg~~~~~~~ 302 (330)
....+.++||+||..||++.+|...|.+.+-+-|.+.|+. |.+|.+-.|..|+++|.||+-..+++|++|||.+.|+.|
T Consensus 46 ~~n~~Iftspn~ps~ypp~r~cv~vi~~~p~~~ve~~Fde~y~IEps~EC~fD~iEvrDGpfGFSPlI~rfCG~~nPp~I 125 (156)
T KOG4586|consen 46 LQNFNIFTSPNFPSRYPPNRDCVRVIHSRPQHDVEVKFDEVYHIEPSYECPFDFIEVRDGPFGFSPLIARFCGDRNPPEI 125 (156)
T ss_pred ecccceEecCCccccCCCCcceEEeEecccccceEEeeeeeEEecccccCCCCcccccCCCcCccHHHHHHhccCCChhh
Confidence 4467889999999999999999999999999999999976 999999999999999999999999999999999999999
Q ss_pred EecCCEEEEEEEeCCCCCCCCeEEEEe
Q psy8443 303 ITGSNQLYMMFKSDASVQRKGFIATHT 329 (330)
Q Consensus 303 ~s~~~~~~v~f~s~~~~~~~GF~~~y~ 329 (330)
.|++..|||+|.||.....+||.|+|.
T Consensus 126 rs~grFlWIkF~sD~ele~~gfsa~y~ 152 (156)
T KOG4586|consen 126 RSVGRFLWIKFRSDSELEYQGFSAEYA 152 (156)
T ss_pred eecCcEEEEEEcccchhhhcccceeee
Confidence 999999999999999999999999994
No 5
>PF00431 CUB: CUB domain CUB domain entry Spermadhesins family entry Link to schematic domain picture by Peer Bork. ; InterPro: IPR000859 The CUB domain (for complement C1r/C1s, Uegf, Bmp1) is a structural motif of approximately 110 residues found almost exclusively in extracellular and plasma membrane-associated proteins, many of which are developmentally regulated [, ]. These proteins are involved in a diverse range of functions, including complement activation, developmental patterning, tissue repair, axon guidance and angiogenesis, cell signalling, fertilisation, haemostasis, inflammation, neurotransmission, receptor-mediated endocytosis, and tumour suppression [, ]. Many CUB-containing proteins are peptidases belonging to MEROPS peptidase families M12A (astacin) and S1A (chymotrypsin). Proteins containing a CUB domain include: Mammalian complement subcomponents C1s/C1r, which form the calcium-dependent complex C1, the first component of the classical pathway of the complement system. Cricetidae sp. (Hamster) serine protease Casp, which degrades type I and IV collagen and fibronectin in the presence of calcium. Mammalian complement-activating component of Ra-reactive factor (RARF), a protease that cleaves the C4 component of complement. Vertebrate enteropeptidase (3.4.21.9 from EC), a type II membrane protein of the intestinal brush border, which activates trypsinogen. Vertebrate bone morphogenic protein 1 (BMP-1), a protein which induces cartilage and bone formation and expresses metalloendopeptidase activity. Sea urchin blastula proteins BP10 and SpAN. Caenorhabditis elegans hypothetical proteins F42A10.8 and R151.5. Neuropilin (A5 antigen), a calcium-independent cell adhesion molecule that functions during the formation of certain neuronal circuits. Fibropellins I and III from Strongylocentrotus purpuratus (Purple sea urchin). Mammalian hyaluronate-binding protein TSG-6 (or PS4), a serum and growth factor induced protein. Mammalian spermadhesins. Xenopus laevis embryonic protein UVS.2, which is expressed during dorsoanterior development. Several of the above proteins consist of a catalytic domain together with several CUB domains interspersed by calcium-binding EGF domains. Some CUB domains appear to be involved in oligomerisation and/or recognition of substrates and binding partners. For example, in the complement proteases, the CUB domains mediate dimerisation and binding to collagen-like regions of target proteins (e.g. C1q for C1r/C1s). The structure of CUB domains consists of a beta-sandwich with a jelly-roll fold. Almost all CUB domains contain four conserved cysteines that probably form two disulphide bridges (C1-C2, C3-C4). The CUB1 domains of C1s and Map19 have calcium-binding sites [].; PDB: 1SFP_A 3KQ4_B 2WNO_A 2QQK_A 2QQL_A 2QQO_B 2QQM_A 3POJ_A 3POB_A 3POG_B ....
Probab=99.74 E-value=2.9e-17 Score=117.27 Aligned_cols=110 Identities=45% Similarity=0.836 Sum_probs=98.8
Q ss_pred CCCeeecCCceEeCCCCCCCCCCCCCcEEEEEcCCCCEEEEEEeEEEecCCCCCCCCCCCceEEEEeCCCCCcccccccC
Q psy8443 59 CGGILKHSNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKIGDSFKSQGVFC 138 (330)
Q Consensus 59 C~~~~~~~~g~~~sp~~p~~~~~~~~C~~~i~~~~g~~~~l~~~~~~l~~~~~~~~~C~~d~l~i~~~~~~~~~~~~~~c 138 (330)
|++.+....|.|.||+||..|+.+..|.|.|+++++..|.|.|..|+++... .|..|+|.|+++.......++++|
T Consensus 1 Cg~~~~~~~g~i~Sp~yp~~y~~~~~C~w~i~~~~~~~I~l~f~~~~~~~~~----~c~~d~l~v~~g~~~~~~~~~~~c 76 (110)
T PF00431_consen 1 CGGRLTNNSGIISSPNYPSNYPSNSDCTWTITAPPGHRIRLTFLSFDLESSD----SCCQDYLEVYDGNDESSPLLGRFC 76 (110)
T ss_dssp SEEEECSSEEEEESTTTTS-SSSSEEEEEEEE-STTEEEEEEEEEEEB--TT----TSTSSEEEEESSSSTTSEEEEEES
T ss_pred CcCEEECCeEEEECCCCCCCCCCCCcEeEEEEecccceeeeccccccceeee----eecccceeEEeeccccceeeeecc
Confidence 6777888999999999999999999999999999999999999999998765 588999999999988788889999
Q ss_pred CCCCCCcEEccCCeEEEEEEeCCCCcccCceEEE
Q psy8443 139 GSKLPPVILSEGNALRIEFHSDNSVQKSGFSAFF 172 (330)
Q Consensus 139 ~~~~~~~~~s~~~~~~~~f~~~~~~~~~Gf~~~~ 172 (330)
|...+..+.+.++.+++.|.++......||.++|
T Consensus 77 g~~~~~~i~s~~~~l~i~f~s~~~~~~~gF~~~y 110 (110)
T PF00431_consen 77 GSSPPPSIISSSNSLFIRFHSDSSNSSRGFKATY 110 (110)
T ss_dssp SSSCCEEEEESSSEEEEEEEESSSSTTSEEEEEE
T ss_pred CCcCCccEEECCCEEEEEEEECCCCCCccEEEEC
Confidence 9888889999999999999999999999999876
No 6
>cd00041 CUB CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
Probab=99.71 E-value=3.3e-16 Score=112.37 Aligned_cols=111 Identities=47% Similarity=0.931 Sum_probs=100.4
Q ss_pred CCCeeecC-CceEeCCCCCCCCCCCCCcEEEEEcCCCCEEEEEEeEEEecCCCCCCCCCCCceEEEEeCCCCCccccccc
Q psy8443 59 CGGILKHS-NGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKIGDSFKSQGVF 137 (330)
Q Consensus 59 C~~~~~~~-~g~~~sp~~p~~~~~~~~C~~~i~~~~g~~~~l~~~~~~l~~~~~~~~~C~~d~l~i~~~~~~~~~~~~~~ 137 (330)
|++.+... .|.|.||+||..|+.+..|.|.|++++|.+|.|.|..|+++... .|..|++.|+++........+++
T Consensus 1 C~~~~~~~~~g~i~Sp~~p~~~~~~~~C~w~i~~~~g~~i~l~f~~~~l~~~~----~C~~d~l~i~~g~~~~~~~~~~~ 76 (113)
T cd00041 1 CGGTLTASTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLESSP----NCSYDYLEIYDGPSTSSPLLGRF 76 (113)
T ss_pred CCCEEccCCCeEEECCCCCCCCCCCCcEEEEEEcCCCCEEEEEEeCcccccCC----CCCCcEEEEEcCCCCccccceee
Confidence 66777666 99999999999999999999999999999999999999998654 78899999999987666778899
Q ss_pred CCCCCCCcEEccCCeEEEEEEeCCCCcccCceEEEe
Q psy8443 138 CGSKLPPVILSEGNALRIEFHSDNSVQKSGFSAFFF 173 (330)
Q Consensus 138 c~~~~~~~~~s~~~~~~~~f~~~~~~~~~Gf~~~~~ 173 (330)
|+...+..+.+.++.+.+.|.++......||.+.|.
T Consensus 77 Cg~~~~~~~~s~~~~~~i~f~s~~~~~~~GF~~~y~ 112 (113)
T cd00041 77 CGSTLPPPIISSGNSLTVRFRSDSSVTGRGFKATYS 112 (113)
T ss_pred ECCCCCCCEEecCCEEEEEEEeCCCCCCCCEEEEEE
Confidence 999988889999999999999999889999999874
No 7
>smart00042 CUB Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein. This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Probab=99.67 E-value=1.3e-15 Score=106.98 Aligned_cols=101 Identities=51% Similarity=0.956 Sum_probs=88.6
Q ss_pred ceEeCCCCCCCCCCCCCcEEEEEcCCCCEEEEEEeEEEecCCCCCCCCCCCceEEEEeCCCCCcccccccCCCCCCC-cE
Q psy8443 68 GTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKIGDSFKSQGVFCGSKLPP-VI 146 (330)
Q Consensus 68 g~~~sp~~p~~~~~~~~C~~~i~~~~g~~~~l~~~~~~l~~~~~~~~~C~~d~l~i~~~~~~~~~~~~~~c~~~~~~-~~ 146 (330)
|.|.||+||..|+.+..|.|.|+++++.+|.|.|..|+++... .|..|+|.|+++.......++++|+...+. .+
T Consensus 1 G~i~Sp~yP~~y~~~~~C~w~i~~~~g~~i~l~f~~~~l~~~~----~C~~d~l~i~~g~~~~~~~~~~~Cg~~~~~~~~ 76 (102)
T smart00042 1 GTITSPNYPQSYPNNLDCVWTIRAPPGYRIELQFTDFDLESSD----NCEYDYVEIYDGPSASSPLLGRFCGSELPPPVI 76 (102)
T ss_pred CEEeCCCCCcCCCCCCcEEEEEECCCCeEEEEEEEEEeccCCC----CeeEeEEEEEeCCCCCCceeEEEecCcCCCCeE
Confidence 6799999999999999999999999999999999999998765 698999999988775556677999988665 45
Q ss_pred EccCCeEEEEEEeCCCCcccCceEEE
Q psy8443 147 LSEGNALRIEFHSDNSVQKSGFSAFF 172 (330)
Q Consensus 147 ~s~~~~~~~~f~~~~~~~~~Gf~~~~ 172 (330)
.+.++.+.+.|.++......||.++|
T Consensus 77 ~s~~n~~~i~f~s~~~~~~~GF~~~y 102 (102)
T smart00042 77 SSSSNSLTVTFVSDSSVQKRGFSARY 102 (102)
T ss_pred EcCCCEEEEEEEeCCCCCCCCeEEEC
Confidence 66699999999999887789998864
No 8
>KOG4292|consensus
Probab=99.59 E-value=1.3e-14 Score=121.65 Aligned_cols=213 Identities=23% Similarity=0.372 Sum_probs=139.9
Q ss_pred ecCCceEeCCCCCCCCCCCCCcEEEEEcCCCCEEEEEEeEEEecCCCCCCCCCCCceEEEEeCCCCCcccccccCCCCCC
Q psy8443 64 KHSNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKIGDSFKSQGVFCGSKLP 143 (330)
Q Consensus 64 ~~~~g~~~sp~~p~~~~~~~~C~~~i~~~~g~~~~l~~~~~~l~~~~~~~~~C~~d~l~i~~~~~~~~~~~~~~c~~~~~ 143 (330)
.+..|.+.+|++|..|.....|.|.+..++++++.+++..+++.... ..|....+.+....... ....++...+
T Consensus 175 ~q~sg~~~~~~~p~~~v~s~~c~Wli~t~p~q~l~irv~~~~~~pt~---n~c~s~~L~i~m~~~s~---~~~~~~~~~~ 248 (454)
T KOG4292|consen 175 TQNSGSIPSPNDPDTYVASSICNWLIDTPPGQRLYIRVVHLHLAPTI---NECESASLTIFMSYKSE---KYGGHGNSRP 248 (454)
T ss_pred CcccccccCCCCcccccccchhhhhhhcCCCcceeEEEEeccCCccc---ccccceeEEEEeccCCc---ccccccCcCh
Confidence 45669999999999999999999999999999999999998775542 46888888887764321 1111111111
Q ss_pred CcEEccCCeEEEEEEeCCCCcccCceEEEecccCccccCCCcccccccccCCceeeeccCCeEEccCCCCc--ccCCCcc
Q psy8443 144 PVILSEGNALRIEFHSDNSVQKSGFSAFFFTDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC--KEGGCKY 221 (330)
Q Consensus 144 ~~~~s~~~~~~~~f~~~~~~~~~Gf~~~~~~~~~eC~~~~~~C~~~C~n~~gsy~C~C~~G~~l~~~~~~C--~~~~C~~ 221 (330)
...-.....+...|.+. .-.+..-...+ . ....+..+ +...|+.
T Consensus 249 ~~~~~~as~~~~~~~s~---------------s~s~~i~~S~~----~---------------~r~s~~~~~~~~~~C~~ 294 (454)
T KOG4292|consen 249 QECGRNASCGSDFYSSM---------------STSKVIFSSGN----L---------------NRRSRTNETYQISDCNR 294 (454)
T ss_pred hhccccccccchhhhhh---------------hhhhhhccccc----c---------------ccccccCCCcccccccc
Confidence 11110000000000000 00000000000 0 00001111 2256888
Q ss_pred eeecCcceeeCCCCCCCCCCCceeEEEEEeCCCCEEEEEEEEEeeCCCCCCCCceEEEEcCCCCCccceeeccCCCCCCc
Q psy8443 222 EITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVVMYDGDSPDSLTLGRFCGIKLPYP 301 (330)
Q Consensus 222 ~~~~~~g~i~sp~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~~~l~~~~~C~~d~l~i~~g~~~~~~~~~~~cg~~~~~~ 301 (330)
.+....|.++||+||..|+++..|+|++.++.++.|.+.|+.|.++....|..|+++...|......+++++++...+..
T Consensus 295 ~~~~~~G~~~Sp~yp~~y~~~l~Ct~~l~~~~g~~l~v~fh~~~~~~s~~C~~d~l~~r~~~~~~~~l~g~~~~~ls~~~ 374 (454)
T KOG4292|consen 295 TYHGKFGNLTSPGYPQNYPNNLDCTTHLTVPGGHTLVVFFHEFSIENSRECINDYLVLRNGNSGNGPLLGPHGAGLSPEL 374 (454)
T ss_pred ceecceeEEcCCCCcccCCCCCcceEEEEcCCCCEEEEEeecccchhhhhhccceEEeccCCCCCCCccCcccCCCCccc
Confidence 88889999999999999999999999999999999999999999999999999999999988888888888444444444
Q ss_pred EEecCCEEEEEEEeC
Q psy8443 302 IITGSNQLYMMFKSD 316 (330)
Q Consensus 302 ~~s~~~~~~v~f~s~ 316 (330)
+.+.++.+.+...+.
T Consensus 375 ~ss~s~g~~l~~~~~ 389 (454)
T KOG4292|consen 375 VSSASLGLSLIDLSM 389 (454)
T ss_pred cccccccceeeeece
Confidence 455555555554443
No 9
>KOG4586|consensus
Probab=99.54 E-value=5.1e-14 Score=96.12 Aligned_cols=106 Identities=32% Similarity=0.533 Sum_probs=98.7
Q ss_pred ecCCceEeCCCCCCCCCCCCCcEEEEEcCCCCEEEEEEeE-EEecCCCCCCCCCCCceEEEEeCCCCCcccccccCCCCC
Q psy8443 64 KHSNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTH-FDIEGNNLFQSSCEYDNLTVFSKIGDSFKSQGVFCGSKL 142 (330)
Q Consensus 64 ~~~~g~~~sp~~p~~~~~~~~C~~~i~~~~g~~~~l~~~~-~~l~~~~~~~~~C~~d~l~i~~~~~~~~~~~~~~c~~~~ 142 (330)
.++.+.+.||+||..|+++..|...+...+.+-+.+.|+. +.+|..- .|..|.+++.||+-.-+++++++||...
T Consensus 46 ~~n~~Iftspn~ps~ypp~r~cv~vi~~~p~~~ve~~Fde~y~IEps~----EC~fD~iEvrDGpfGFSPlI~rfCG~~n 121 (156)
T KOG4586|consen 46 LQNFNIFTSPNFPSRYPPNRDCVRVIHSRPQHDVEVKFDEVYHIEPSY----ECPFDFIEVRDGPFGFSPLIARFCGDRN 121 (156)
T ss_pred ecccceEecCCccccCCCCcceEEeEecccccceEEeeeeeEEecccc----cCCCCcccccCCCcCccHHHHHHhccCC
Confidence 5678889999999999999999999999999999999984 6788765 8999999999999988999999999999
Q ss_pred CCcEEccCCeEEEEEEeCCCCcccCceEEEe
Q psy8443 143 PPVILSEGNALRIEFHSDNSVQKSGFSAFFF 173 (330)
Q Consensus 143 ~~~~~s~~~~~~~~f~~~~~~~~~Gf~~~~~ 173 (330)
|+.+.+.+..+|+.|.+|......||.+.|-
T Consensus 122 Pp~Irs~grFlWIkF~sD~ele~~gfsa~y~ 152 (156)
T KOG4586|consen 122 PPEIRSVGRFLWIKFRSDSELEYQGFSAEYA 152 (156)
T ss_pred ChhheecCcEEEEEEcccchhhhcccceeee
Confidence 9999999999999999999999999999884
No 10
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=99.28 E-value=5.7e-12 Score=71.71 Aligned_cols=40 Identities=53% Similarity=1.091 Sum_probs=35.5
Q ss_pred eeccccCCCCCCe--eeEEeecceEEEecCCCcEEcCCCCcc
Q psy8443 10 KFDECALEDHGCE--HTCKNILGGYECSCKIGYELHSDGKIC 49 (330)
Q Consensus 10 dideC~~~~~~C~--~~C~n~~gsy~C~C~~G~~l~~dg~~C 49 (330)
|||||....+.|. +.|+|+.|+|+|.|++||.+..++..|
T Consensus 1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~~~~~~~C 42 (42)
T PF07645_consen 1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPPGYELNDDGTTC 42 (42)
T ss_dssp ESSTTTTTSSSSSTTSEEEEETTEEEEEESTTEEECTTSSEE
T ss_pred CccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcEECCCCCcC
Confidence 8999999888897 499999999999999999977776665
No 11
>KOG1214|consensus
Probab=99.27 E-value=1.3e-11 Score=109.94 Aligned_cols=49 Identities=35% Similarity=0.690 Sum_probs=45.4
Q ss_pred eeeeeEeeccccCCCCCCee--eEEeecceEEEecCCCcEEcCCCCccccc
Q psy8443 4 LRIRWFKFDECALEDHGCEH--TCKNILGGYECSCKIGYELHSDGKICVGS 52 (330)
Q Consensus 4 ~~~~C~dideC~~~~~~C~~--~C~n~~gsy~C~C~~G~~l~~dg~~C~~~ 52 (330)
+++.|.|++||++.++.|.. +|+|.+|+|+|.|..||+++.|+.+|+..
T Consensus 727 dgr~c~d~~eca~~~~~CGp~s~Cin~pg~~rceC~~gy~F~dd~~tCV~i 777 (1289)
T KOG1214|consen 727 DGRNCVDENECATGFHRCGPNSVCINLPGSYRCECRSGYEFADDRHTCVLI 777 (1289)
T ss_pred CCCCCCChhhhccCCCCCCCCceeecCCCceeEEEeecceeccCCcceEEe
Confidence 67889999999999999975 99999999999999999999999999754
No 12
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=99.25 E-value=5.6e-12 Score=67.85 Aligned_cols=36 Identities=47% Similarity=1.217 Sum_probs=31.2
Q ss_pred ccCCCCCCeeeEEeecceEEEecCCCcEEcCCCCcc
Q psy8443 14 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 49 (330)
Q Consensus 14 C~~~~~~C~~~C~n~~gsy~C~C~~G~~l~~dg~~C 49 (330)
|...+++|+|.|+|++|+|+|+|++||.|..|+++|
T Consensus 1 C~~~NGgC~h~C~~~~g~~~C~C~~Gy~L~~D~~tC 36 (36)
T PF14670_consen 1 CSVNNGGCSHICVNTPGSYRCSCPPGYKLAEDGRTC 36 (36)
T ss_dssp CTTGGGGSSSEEEEETTSEEEE-STTEEE-TTSSSE
T ss_pred CCCCCCCcCCCCccCCCceEeECCCCCEECcCCCCC
Confidence 556678999999999999999999999999999987
No 13
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=98.90 E-value=1e-09 Score=59.14 Aligned_cols=36 Identities=61% Similarity=1.279 Sum_probs=31.1
Q ss_pred cccCCCcccccccccCCceeeeccCCeEEccCCCCc
Q psy8443 179 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 214 (330)
Q Consensus 179 C~~~~~~C~~~C~n~~gsy~C~C~~G~~l~~~~~~C 214 (330)
|..+++.|++.|.++.++|.|.|++||.|+.|+++|
T Consensus 1 C~~~NGgC~h~C~~~~g~~~C~C~~Gy~L~~D~~tC 36 (36)
T PF14670_consen 1 CSVNNGGCSHICVNTPGSYRCSCPPGYKLAEDGRTC 36 (36)
T ss_dssp CTTGGGGSSSEEEEETTSEEEE-STTEEE-TTSSSE
T ss_pred CCCCCCCcCCCCccCCCceEeECCCCCEECcCCCCC
Confidence 556688899999999999999999999999999887
No 14
>KOG4292|consensus
Probab=98.86 E-value=2e-08 Score=85.09 Aligned_cols=157 Identities=20% Similarity=0.224 Sum_probs=105.8
Q ss_pred ccCCCCeeecCCceEeCCCCCCCCCCCCCcEEEEEcCCCCEEEEEEeEEEecCCCCCCCCCCCceEEEEeCCCCCccccc
Q psy8443 56 RDACGGILKHSNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKIGDSFKSQG 135 (330)
Q Consensus 56 ~~~C~~~~~~~~g~~~sp~~p~~~~~~~~C~~~i~~~~g~~~~l~~~~~~l~~~~~~~~~C~~d~l~i~~~~~~~~~~~~ 135 (330)
...|++.+....|.+.||+||..|+++..|+|++.++.++.+.+.|..+.++... .|.+|++....+......+.+
T Consensus 289 ~~~C~~~~~~~~G~~~Sp~yp~~y~~~l~Ct~~l~~~~g~~l~v~fh~~~~~~s~----~C~~d~l~~r~~~~~~~~l~g 364 (454)
T KOG4292|consen 289 ISDCNRTYHGKFGNLTSPGYPQNYPNNLDCTTHLTVPGGHTLVVFFHEFSIENSR----ECINDYLVLRNGNSGNGPLLG 364 (454)
T ss_pred ccccccceecceeEEcCCCCcccCCCCCcceEEEEcCCCCEEEEEeecccchhhh----hhccceEEeccCCCCCCCccC
Confidence 4678888888999999999999999999999999999999999888888887766 899998888888777777777
Q ss_pred ccCCCCCCCcEEccCCe-EEEEEEeC-CCCcccCceEEEecccCccccCCCcccccccccCCceeeeccCCeEEccCCCC
Q psy8443 136 VFCGSKLPPVILSEGNA-LRIEFHSD-NSVQKSGFSAFFFTDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHD 213 (330)
Q Consensus 136 ~~c~~~~~~~~~s~~~~-~~~~f~~~-~~~~~~Gf~~~~~~~~~eC~~~~~~C~~~C~n~~gsy~C~C~~G~~l~~~~~~ 213 (330)
. ++...++.+.+..+. +.+...+. .......|..... +.-
T Consensus 365 ~-~~~~ls~~~~ss~s~g~~l~~~~~~i~~~~~~~~~~~~-~~~------------------------------------ 406 (454)
T KOG4292|consen 365 P-HGAGLSPELVSSASLGLSLIDLSMGVVVGEDSFRILPR-NPT------------------------------------ 406 (454)
T ss_pred c-ccCCCCccccccccccceeeeeceeeEeeccccccccc-Ccc------------------------------------
Confidence 7 444444444443332 22222221 1111122221110 000
Q ss_pred cccCCCcceeecCcceeeCCCCCCCCCCCceeEEEEEeCCCCEE
Q psy8443 214 CKEGGCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRI 257 (330)
Q Consensus 214 C~~~~C~~~~~~~~g~i~sp~~p~~y~~~~~C~w~i~~~~~~~i 257 (330)
..++.......|.-..++|+.-+|+..+|.|....+....+
T Consensus 407 ---e~~~~~s~~~~g~~~~~g~~~~~pn~~dc~~~~~d~~~~~~ 447 (454)
T KOG4292|consen 407 ---ELPGGPSASENGKGKNMGYNSITPNRDDCDDLELDEDQLDA 447 (454)
T ss_pred ---cCCCCccccccCCCCCCCCcccCCCcccccceecccccccc
Confidence 01111222345667788999999999999998776655433
No 15
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=98.84 E-value=3.1e-09 Score=60.43 Aligned_cols=40 Identities=48% Similarity=0.991 Sum_probs=34.6
Q ss_pred ccCccccCCCccc--ccccccCCceeeeccCCeEEccCCCCc
Q psy8443 175 DKDECMTNNGGCQ--HECRNTIGSYICSCHNGYTLLENGHDC 214 (330)
Q Consensus 175 ~~~eC~~~~~~C~--~~C~n~~gsy~C~C~~G~~l~~~~~~C 214 (330)
|+|||......|. ..|+|+.|+|.|.|++||.+..++..|
T Consensus 1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~~~~~~~C 42 (42)
T PF07645_consen 1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPPGYELNDDGTTC 42 (42)
T ss_dssp ESSTTTTTSSSSSTTSEEEEETTEEEEEESTTEEECTTSSEE
T ss_pred CccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcEECCCCCcC
Confidence 6899999988887 569999999999999999977666554
No 16
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=98.59 E-value=3.3e-08 Score=47.57 Aligned_cols=22 Identities=45% Similarity=1.067 Sum_probs=20.1
Q ss_pred eEEEecCCCcEEcCCCCccccc
Q psy8443 31 GYECSCKIGYELHSDGKICVGS 52 (330)
Q Consensus 31 sy~C~C~~G~~l~~dg~~C~~~ 52 (330)
||+|.|++||++..++++|+++
T Consensus 1 sy~C~C~~Gy~l~~d~~~C~DI 22 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDGRSCEDI 22 (24)
T ss_pred CEEeeCCCCCcCCCCCCccccC
Confidence 6999999999999999999664
No 17
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=98.39 E-value=1.9e-07 Score=50.50 Aligned_cols=34 Identities=50% Similarity=1.157 Sum_probs=26.5
Q ss_pred ccCCCCCCee--eEEeecceEEEecCCCcEEcCCCCcc
Q psy8443 14 CALEDHGCEH--TCKNILGGYECSCKIGYELHSDGKIC 49 (330)
Q Consensus 14 C~~~~~~C~~--~C~n~~gsy~C~C~~G~~l~~dg~~C 49 (330)
|+..++.|.. .|+|++++|.|.|++||+ +||..|
T Consensus 1 C~~~~~~C~~nA~C~~~~~~~~C~C~~Gy~--GdG~~C 36 (36)
T PF12947_consen 1 CLENNGGCHPNATCTNTGGSYTCTCKPGYE--GDGFFC 36 (36)
T ss_dssp TTTGGGGS-TTCEEEE-TTSEEEEE-CEEE--CCSTCE
T ss_pred CCCCCCCCCCCcEeecCCCCEEeECCCCCc--cCCcCC
Confidence 5556678875 999999999999999999 888776
No 18
>KOG1219|consensus
Probab=98.33 E-value=6.7e-07 Score=88.30 Aligned_cols=44 Identities=27% Similarity=0.499 Sum_probs=34.8
Q ss_pred cccCceEEEec--ccCccccCCCcccccccccCCceeeeccCCeEE
Q psy8443 164 QKSGFSAFFFT--DKDECMTNNGGCQHECRNTIGSYICSCHNGYTL 207 (330)
Q Consensus 164 ~~~Gf~~~~~~--~~~eC~~~~~~C~~~C~n~~gsy~C~C~~G~~l 207 (330)
++.||++..|. .++||..+.+.-++.|.|+.|+|.|-|-+||..
T Consensus 3928 C~~gyTG~~Ce~~Gi~eCs~n~C~~gg~C~n~~gsf~CncT~g~~g 3973 (4289)
T KOG1219|consen 3928 CPNGYTGKRCEARGISECSKNVCGTGGQCINIPGSFHCNCTPGILG 3973 (4289)
T ss_pred CCCCccCceeecccccccccccccCCceeeccCCceEeccChhHhc
Confidence 34455555543 388999988777888999999999999999983
No 19
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=98.21 E-value=1.3e-06 Score=48.90 Aligned_cols=36 Identities=47% Similarity=1.150 Sum_probs=30.2
Q ss_pred eeccccCCCCCCee--eEEeecceEEEecCCCcEEcCCCCcc
Q psy8443 10 KFDECALEDHGCEH--TCKNILGGYECSCKIGYELHSDGKIC 49 (330)
Q Consensus 10 dideC~~~~~~C~~--~C~n~~gsy~C~C~~G~~l~~dg~~C 49 (330)
|+|||... ..|.+ .|+|+.|+|.|.|++||. +|+.|
T Consensus 1 d~~~C~~~-~~C~~~~~C~~~~g~~~C~C~~g~~---~g~~C 38 (39)
T smart00179 1 DIDECASG-NPCQNGGTCVNTVGSYRCECPPGYT---DGRNC 38 (39)
T ss_pred CcccCcCC-CCcCCCCEeECCCCCeEeECCCCCc---cCCcC
Confidence 58999864 56876 999999999999999997 56666
No 20
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=98.14 E-value=1.2e-06 Score=42.12 Aligned_cols=21 Identities=48% Similarity=1.168 Sum_probs=19.8
Q ss_pred ceeeeccCCeEEccCCCCccc
Q psy8443 196 SYICSCHNGYTLLENGHDCKE 216 (330)
Q Consensus 196 sy~C~C~~G~~l~~~~~~C~~ 216 (330)
||+|.|++||.|..++++|.|
T Consensus 1 sy~C~C~~Gy~l~~d~~~C~D 21 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDGRSCED 21 (24)
T ss_pred CEEeeCCCCCcCCCCCCcccc
Confidence 699999999999999999986
No 21
>PF05428 CRF-BP: Corticotropin-releasing factor binding protein (CRF-BP); InterPro: IPR008435 This family consists of several eukaryotic corticotropin-releasing factor binding proteins (CRF-BP or CRH-BP). Corticotropin-releasing hormone (CRH) plays multiple roles in vertebrate species. In mammals, it is the major hypothalamic releasing factor for pituitary adrenocorticotropin secretion, and is a neurotransmitter or neuromodulator at other sites in the central nervous system. In non-mammalian vertebrates, CRH not only acts as a neurotransmitter and hypophysiotropin, it also acts as a potent thyrotropin-releasing factor, allowing CRH to regulate both the adrenal and thyroid axes, especially in development. CRH-BP is thought to play an inhibitory role in which it binds CRH and other CRH-like ligands and prevents the activation of CRH receptors. There is however evidence that CRH-BP may also exhibit diverse extra and intracellular roles in a cell specific fashion and at specific times in development [].
Probab=97.81 E-value=0.00031 Score=56.60 Aligned_cols=84 Identities=20% Similarity=0.373 Sum_probs=66.0
Q ss_pred CCCceeEEEEEeCCCCEEEEEEEEEeeCCCCCCC-CceEEEEcC--------CCC------CccceeeccCCCCCC-cEE
Q psy8443 240 PSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCA-YDHVVMYDG--------DSP------DSLTLGRFCGIKLPY-PII 303 (330)
Q Consensus 240 ~~~~~C~w~i~~~~~~~i~l~f~~~~l~~~~~C~-~d~l~i~~g--------~~~------~~~~~~~~cg~~~~~-~~~ 303 (330)
.+...|--.+.+.+++.|.++|..+|+. |. .|+|.|+|| ++. ...+...||++.... .+.
T Consensus 76 ~pq~~Ca~y~iaePd~~IeI~~~~vdid----C~~G~ll~v~DGW~LnGe~FPs~~DHplpl~eR~~efC~~~~~~~~~r 151 (311)
T PF05428_consen 76 RPQLVCAAYFIAEPDELIEIEFDHVDID----CEGGDLLKVFDGWELNGEKFPSSQDHPLPLEERYTEFCDSGPNRRSFR 151 (311)
T ss_pred CCCceeEEEEEeCCCeEEEEEEEEeecc----CCCCCEEEEEeceEECccCCcCcccCCCchHHHHHHhccCCCCcceeE
Confidence 4577899999999999999999999995 33 799999998 221 233456899985543 689
Q ss_pred ecCCEEEEEEEeCCCCCCCCeEEEEe
Q psy8443 304 TGSNQLYMMFKSDASVQRKGFIATHT 329 (330)
Q Consensus 304 s~~~~~~v~f~s~~~~~~~GF~~~y~ 329 (330)
|+.|.+.|.|+-.. .+.||.++.+
T Consensus 152 SSQNvAmi~fRip~--~GsgFt~~vR 175 (311)
T PF05428_consen 152 SSQNVAMIQFRIPS--PGSGFTLTVR 175 (311)
T ss_pred eccceEEEEEEecC--CCCceEEEEE
Confidence 99999999999876 5677877754
No 22
>KOG1214|consensus
Probab=97.66 E-value=2.8e-05 Score=70.63 Aligned_cols=45 Identities=36% Similarity=0.743 Sum_probs=40.7
Q ss_pred eeeeeEeeccccCCCCCCee--eEEeecceEEEecCCCcEEcCCCCccccc
Q psy8443 4 LRIRWFKFDECALEDHGCEH--TCKNILGGYECSCKIGYELHSDGKICVGS 52 (330)
Q Consensus 4 ~~~~C~dideC~~~~~~C~~--~C~n~~gsy~C~C~~G~~l~~dg~~C~~~ 52 (330)
+++.|.|+|||. +..|.+ .|.|++|++.|.|.+||. +||..|++.
T Consensus 820 DG~~c~dvDeC~--psrChp~A~CyntpgsfsC~C~pGy~--GDGf~CVP~ 866 (1289)
T KOG1214|consen 820 DGHQCTDVDECS--PSRCHPAATCYNTPGSFSCRCQPGYY--GDGFQCVPD 866 (1289)
T ss_pred CccccccccccC--ccccCCCceEecCCCcceeecccCcc--CCCceecCC
Confidence 688999999998 467876 999999999999999998 999999865
No 23
>PF05428 CRF-BP: Corticotropin-releasing factor binding protein (CRF-BP); InterPro: IPR008435 This family consists of several eukaryotic corticotropin-releasing factor binding proteins (CRF-BP or CRH-BP). Corticotropin-releasing hormone (CRH) plays multiple roles in vertebrate species. In mammals, it is the major hypothalamic releasing factor for pituitary adrenocorticotropin secretion, and is a neurotransmitter or neuromodulator at other sites in the central nervous system. In non-mammalian vertebrates, CRH not only acts as a neurotransmitter and hypophysiotropin, it also acts as a potent thyrotropin-releasing factor, allowing CRH to regulate both the adrenal and thyroid axes, especially in development. CRH-BP is thought to play an inhibitory role in which it binds CRH and other CRH-like ligands and prevents the activation of CRH receptors. There is however evidence that CRH-BP may also exhibit diverse extra and intracellular roles in a cell specific fashion and at specific times in development [].
Probab=97.60 E-value=0.023 Score=46.12 Aligned_cols=164 Identities=22% Similarity=0.305 Sum_probs=108.9
Q ss_pred CCCCCcEEEEEcCCCCEEEEEEeEEEecCCCCCCCCCCCceEEEEeCCCCC--------------cccccccCCCCCCC-
Q psy8443 80 IKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKIGDS--------------FKSQGVFCGSKLPP- 144 (330)
Q Consensus 80 ~~~~~C~~~i~~~~g~~~~l~~~~~~l~~~~~~~~~C~~d~l~i~~~~~~~--------------~~~~~~~c~~~~~~- 144 (330)
.+...|-..+.+.|...|.+.+..++++... -|.+.+.||..-. ......+|++....
T Consensus 76 ~pq~~Ca~y~iaePd~~IeI~~~~vdidC~~-------G~ll~v~DGW~LnGe~FPs~~DHplpl~eR~~efC~~~~~~~ 148 (311)
T PF05428_consen 76 RPQLVCAAYFIAEPDELIEIEFDHVDIDCEG-------GDLLKVFDGWELNGEKFPSSQDHPLPLEERYTEFCDSGPNRR 148 (311)
T ss_pred CCCceeEEEEEeCCCeEEEEEEEEeeccCCC-------CCEEEEEeceEECccCCcCcccCCCchHHHHHHhccCCCCcc
Confidence 4577899888999999999999999986432 4788888875321 11223678876654
Q ss_pred cEEccCCeEEEEEEeCCCCcccCceEEEecccCccccCCCcccccccccCCceeeeccCCeEEccCCCCcccCCCcceee
Q psy8443 145 VILSEGNALRIEFHSDNSVQKSGFSAFFFTDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGGCKYEIT 224 (330)
Q Consensus 145 ~~~s~~~~~~~~f~~~~~~~~~Gf~~~~~~~~~eC~~~~~~C~~~C~n~~gsy~C~C~~G~~l~~~~~~C~~~~C~~~~~ 224 (330)
.+.|+.|...+.|+-.. .+.||.+......+ ..+|.....
T Consensus 149 ~~rSSQNvAmi~fRip~--~GsgFt~~vR~~~N--------------------------------------p~PCNVisq 188 (311)
T PF05428_consen 149 SFRSSQNVAMIQFRIPS--PGSGFTLTVRFIKN--------------------------------------PFPCNVISQ 188 (311)
T ss_pred eeEeccceEEEEEEecC--CCCceEEEEEeCCC--------------------------------------CCCceEecc
Confidence 56888888877777643 46788877655433 144555556
Q ss_pred cCcceeeCCCCCCCCCCCceeEEEEEeCCCCEEEEEEEEEeeCC----------CCCCC--CceEEEEcCCCC---Cccc
Q psy8443 225 APNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEP----------HQTCA--YDHVVMYDGDSP---DSLT 289 (330)
Q Consensus 225 ~~~g~i~sp~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~~~l~~----------~~~C~--~d~l~i~~g~~~---~~~~ 289 (330)
.+.|.++.-+| ....+|...+.-|. .+++.++.|.. ...|. .|||+|--|..- ....
T Consensus 189 ~~~g~fTl~n~----gq~rNCSfs~iyP~----~i~i~~L~lG~~~~l~~~~~~~~~C~~~~D~Vei~Gg~GlD~skM~~ 260 (311)
T PF05428_consen 189 SPEGRFTLRNP----GQRRNCSFSIIYPV----VISISDLSLGHTNGLELQRGVIHGCQGSGDFVEIGGGNGLDTSKMFP 260 (311)
T ss_pred CCCcceEEECC----CcccCcEEEEEeee----EEEEEEEecccccCcccccccccCCCCcCCeEEECCcCCcCcccCEE
Confidence 66777665443 56778998887654 55555666644 23464 799999765432 3444
Q ss_pred eeeccCCCC
Q psy8443 290 LGRFCGIKL 298 (330)
Q Consensus 290 ~~~~cg~~~ 298 (330)
++.+||...
T Consensus 261 ~~~lCg~~~ 269 (311)
T PF05428_consen 261 VADLCGSFS 269 (311)
T ss_pred hhHhhccCC
Confidence 567888754
No 24
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=97.59 E-value=7.3e-05 Score=41.27 Aligned_cols=35 Identities=49% Similarity=1.132 Sum_probs=28.3
Q ss_pred eeccccCCCCCCe--eeEEeecceEEEecCCCcEEcCCCCcc
Q psy8443 10 KFDECALEDHGCE--HTCKNILGGYECSCKIGYELHSDGKIC 49 (330)
Q Consensus 10 dideC~~~~~~C~--~~C~n~~gsy~C~C~~G~~l~~dg~~C 49 (330)
++|+|... ..|. +.|.|+.++|.|.|++||. |+.|
T Consensus 1 ~~~~C~~~-~~C~~~~~C~~~~~~~~C~C~~g~~----g~~C 37 (38)
T cd00054 1 DIDECASG-NPCQNGGTCVNTVGSYRCSCPPGYT----GRNC 37 (38)
T ss_pred CcccCCCC-CCcCCCCEeECCCCCeEeECCCCCc----CCcC
Confidence 47888753 4674 4899999999999999998 6666
No 25
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=97.58 E-value=3.7e-05 Score=61.97 Aligned_cols=45 Identities=40% Similarity=0.791 Sum_probs=39.5
Q ss_pred ceEEEecccCccccCCCcccccccccCCceeeeccCCeEEccCCC
Q psy8443 168 FSAFFFTDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGH 212 (330)
Q Consensus 168 f~~~~~~~~~eC~~~~~~C~~~C~n~~gsy~C~C~~G~~l~~~~~ 212 (330)
+....|.+.++|...++.|.+.|.++.|+|.|.|+.||.++.++.
T Consensus 179 l~~~~C~~~~~C~~~~~~c~~~C~~~~g~~~c~c~~g~~~~~~~~ 223 (224)
T cd01475 179 FQGKICVVPDLCATLSHVCQQVCISTPGSYLCACTEGYALLEDNK 223 (224)
T ss_pred cccccCcCchhhcCCCCCccceEEcCCCCEEeECCCCccCCCCCC
Confidence 445567789999999889999999999999999999999987765
No 26
>smart00181 EGF Epidermal growth factor-like domain.
Probab=97.53 E-value=0.0001 Score=39.91 Aligned_cols=28 Identities=50% Similarity=1.050 Sum_probs=23.2
Q ss_pred cccCCCCCCee-eEEeecceEEEecCCCcE
Q psy8443 13 ECALEDHGCEH-TCKNILGGYECSCKIGYE 41 (330)
Q Consensus 13 eC~~~~~~C~~-~C~n~~gsy~C~C~~G~~ 41 (330)
+|... ..|.+ +|+++.++|.|.|++||.
T Consensus 1 ~C~~~-~~C~~~~C~~~~~~~~C~C~~g~~ 29 (35)
T smart00181 1 ECASG-GPCSNGTCINTPGSYTCSCPPGYT 29 (35)
T ss_pred CCCCc-CCCCCCEEECCCCCeEeECCCCCc
Confidence 35443 56877 999999999999999998
No 27
>KOG4289|consensus
Probab=97.50 E-value=0.0028 Score=61.64 Aligned_cols=36 Identities=33% Similarity=0.919 Sum_probs=30.7
Q ss_pred EeeccccCCCCCCee--eEEeecceEEEecCCCcEEcCCCCccc
Q psy8443 9 FKFDECALEDHGCEH--TCKNILGGYECSCKIGYELHSDGKICV 50 (330)
Q Consensus 9 ~dideC~~~~~~C~~--~C~n~~gsy~C~C~~G~~l~~dg~~C~ 50 (330)
.+||+|-++ +|.+ .|...+|+|+|.|.+||+ |..|+
T Consensus 1237 TeiDlCYs~--pC~nng~C~srEggYtCeCrpg~t----GehCE 1274 (2531)
T KOG4289|consen 1237 TEIDLCYSG--PCGNNGRCRSREGGYTCECRPGFT----GEHCE 1274 (2531)
T ss_pred chhHhhhcC--CCCCCCceEEecCceeEEecCCcc----cccee
Confidence 468999874 5654 999999999999999999 88885
No 28
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=97.50 E-value=6.9e-05 Score=40.50 Aligned_cols=29 Identities=55% Similarity=1.259 Sum_probs=21.2
Q ss_pred cccCCCcccc--cccccCCceeeeccCCeEE
Q psy8443 179 CMTNNGGCQH--ECRNTIGSYICSCHNGYTL 207 (330)
Q Consensus 179 C~~~~~~C~~--~C~n~~gsy~C~C~~G~~l 207 (330)
|..+++.|+. .|.++.++|.|.|++||..
T Consensus 1 C~~~~~~C~~nA~C~~~~~~~~C~C~~Gy~G 31 (36)
T PF12947_consen 1 CLENNGGCHPNATCTNTGGSYTCTCKPGYEG 31 (36)
T ss_dssp TTTGGGGS-TTCEEEE-TTSEEEEE-CEEEC
T ss_pred CCCCCCCCCCCcEeecCCCCEEeECCCCCcc
Confidence 4556667764 5999999999999999994
No 29
>KOG4260|consensus
Probab=97.46 E-value=5.1e-05 Score=59.87 Aligned_cols=37 Identities=30% Similarity=0.598 Sum_probs=32.6
Q ss_pred eeeEeeccccCCCCCCee--eEEeecceEEEecCCCcEE
Q psy8443 6 IRWFKFDECALEDHGCEH--TCKNILGGYECSCKIGYEL 42 (330)
Q Consensus 6 ~~C~dideC~~~~~~C~~--~C~n~~gsy~C~C~~G~~l 42 (330)
.-|.|||||...+.+|.. .|+|+.|||.|.+.+||..
T Consensus 231 ~gCvDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~ 269 (350)
T KOG4260|consen 231 EGCVDVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYKK 269 (350)
T ss_pred cccccHHHHhcCCCCCChhheeecCCCceEecccccccC
Confidence 359999999987778863 9999999999999999983
No 30
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=97.44 E-value=0.00015 Score=40.30 Aligned_cols=36 Identities=53% Similarity=1.221 Sum_probs=27.4
Q ss_pred ccCccccCCCcccc--cccccCCceeeeccCCeEEccCCCCc
Q psy8443 175 DKDECMTNNGGCQH--ECRNTIGSYICSCHNGYTLLENGHDC 214 (330)
Q Consensus 175 ~~~eC~~~~~~C~~--~C~n~~gsy~C~C~~G~~l~~~~~~C 214 (330)
++++|... ..|.+ .|.++.++|.|.|++||. ++..|
T Consensus 1 d~~~C~~~-~~C~~~~~C~~~~g~~~C~C~~g~~---~g~~C 38 (39)
T smart00179 1 DIDECASG-NPCQNGGTCVNTVGSYRCECPPGYT---DGRNC 38 (39)
T ss_pred CcccCcCC-CCcCCCCEeECCCCCeEeECCCCCc---cCCcC
Confidence 36778763 44654 799999999999999998 45554
No 31
>KOG4260|consensus
Probab=97.39 E-value=5.5e-05 Score=59.68 Aligned_cols=44 Identities=32% Similarity=0.602 Sum_probs=37.1
Q ss_pred cccCceEEE--ecccCccccCCCccccc--ccccCCceeeeccCCeEE
Q psy8443 164 QKSGFSAFF--FTDKDECMTNNGGCQHE--CRNTIGSYICSCHNGYTL 207 (330)
Q Consensus 164 ~~~Gf~~~~--~~~~~eC~~~~~~C~~~--C~n~~gsy~C~C~~G~~l 207 (330)
+..||.+.- |+|+|||...+.+|.+. |+|+.|||.|.+++||..
T Consensus 222 CkkGW~lde~gCvDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~ 269 (350)
T KOG4260|consen 222 CKKGWKLDEEGCVDVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYKK 269 (350)
T ss_pred hcccceecccccccHHHHhcCCCCCChhheeecCCCceEecccccccC
Confidence 456666543 67999999999999764 999999999999999985
No 32
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=97.28 E-value=0.0004 Score=36.56 Aligned_cols=23 Identities=43% Similarity=1.213 Sum_probs=20.6
Q ss_pred CCCee--eEEeec-ceEEEecCCCcE
Q psy8443 19 HGCEH--TCKNIL-GGYECSCKIGYE 41 (330)
Q Consensus 19 ~~C~~--~C~n~~-gsy~C~C~~G~~ 41 (330)
.+|.+ +|++.. ++|.|.|++||+
T Consensus 4 ~~C~n~g~C~~~~~~~y~C~C~~G~~ 29 (32)
T PF00008_consen 4 NPCQNGGTCIDLPGGGYTCECPPGYT 29 (32)
T ss_dssp TSSTTTEEEEEESTSEEEEEEBTTEE
T ss_pred CcCCCCeEEEeCCCCCEEeECCCCCc
Confidence 36766 999999 999999999998
No 33
>KOG4289|consensus
Probab=97.24 E-value=0.0028 Score=61.61 Aligned_cols=46 Identities=28% Similarity=0.647 Sum_probs=41.8
Q ss_pred CCcccCceEEEec-ccCccccCCCcccccccccCCceeeeccCCeEE
Q psy8443 162 SVQKSGFSAFFFT-DKDECMTNNGGCQHECRNTIGSYICSCHNGYTL 207 (330)
Q Consensus 162 ~~~~~Gf~~~~~~-~~~eC~~~~~~C~~~C~n~~gsy~C~C~~G~~l 207 (330)
+.++.||++.||. .+|+|..+++..++.|....|+|+|.|++||..
T Consensus 1224 CrCPpGFTgd~CeTeiDlCYs~pC~nng~C~srEggYtCeCrpg~tG 1270 (2531)
T KOG4289|consen 1224 CRCPPGFTGDYCETEIDLCYSGPCGNNGRCRSREGGYTCECRPGFTG 1270 (2531)
T ss_pred EeCCCCCCcccccchhHhhhcCCCCCCCceEEecCceeEEecCCccc
Confidence 5688999999996 899999998777888999999999999999985
No 34
>PF02408 CUB_2: CUB-like domain; InterPro: IPR003366 This domain is found in a family of hypothetical Caenorhabditis elegans proteins. The aligned region has no known function nor do any of the proteins which possess it. However, this domain is related to the CUB domain (IPR000859 from INTERPRO). The aligned region is approximately 130 amino acids long and contains two conserved cysteine residues.
Probab=97.21 E-value=0.0065 Score=43.51 Aligned_cols=82 Identities=12% Similarity=0.260 Sum_probs=54.0
Q ss_pred CCCCCCceeEEEEEeCCCCEEEEEEEEEeeCCCCCCCCceEEEEcCCCCCccceeeccCCCCCCcEEecCCEEEEEEEeC
Q psy8443 237 DYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVVMYDGDSPDSLTLGRFCGIKLPYPIITGSNQLYMMFKSD 316 (330)
Q Consensus 237 ~~y~~~~~C~w~i~~~~~~~i~l~f~~~~l~~~~~C~~d~l~i~~g~~~~~~~~~~~cg~~~~~~~~s~~~~~~v~f~s~ 316 (330)
..+|.+.+|.|.|.+|.|.-++|++.. ++.. .|.+.|.|..... ..+-... ...+...++...|...+.
T Consensus 36 ~~~p~n~~C~y~i~iP~G~~a~v~~~~-~~~~-----~d~i~v~D~~g~~----~~~~~~~-~~~~~~~~p~~~i~v~t~ 104 (120)
T PF02408_consen 36 PQFPANQNCTYQINIPKGYYAKVTLSA-NLND-----NDSITVTDSNGKS----EYITSSD-NEPFYFVAPGFSIQVQTV 104 (120)
T ss_pred cccCCCCceEEEEEcCCceEEEEEEEE-ecCC-----CCEEEEEecCCCE----EEeecCC-CcEEEEeCCCeEEEEEEC
Confidence 347788899999999999988887644 2222 4999999954322 1122221 223455555567777777
Q ss_pred CCCCCCCeEEEEe
Q psy8443 317 ASVQRKGFIATHT 329 (330)
Q Consensus 317 ~~~~~~GF~~~y~ 329 (330)
......+|++.|.
T Consensus 105 t~~~~F~f~v~w~ 117 (120)
T PF02408_consen 105 TGNSQFGFKVQWQ 117 (120)
T ss_pred CCCcEEEEEEEEE
Confidence 6666788888874
No 35
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=96.94 E-value=0.001 Score=35.91 Aligned_cols=24 Identities=42% Similarity=0.998 Sum_probs=20.8
Q ss_pred CCCCe--eeEEeecceEEEecCCCcE
Q psy8443 18 DHGCE--HTCKNILGGYECSCKIGYE 41 (330)
Q Consensus 18 ~~~C~--~~C~n~~gsy~C~C~~G~~ 41 (330)
...|. ..|+++.++|.|.|+.||.
T Consensus 5 ~~~C~~~~~C~~~~~~~~C~C~~g~~ 30 (36)
T cd00053 5 SNPCSNGGTCVNTPGSYRCVCPPGYT 30 (36)
T ss_pred CCCCCCCCEEecCCCCeEeECCCCCc
Confidence 35676 4999999999999999998
No 36
>smart00181 EGF Epidermal growth factor-like domain.
Probab=96.54 E-value=0.0024 Score=34.33 Aligned_cols=25 Identities=56% Similarity=1.043 Sum_probs=21.3
Q ss_pred Ccccc-cccccCCceeeeccCCeEEc
Q psy8443 184 GGCQH-ECRNTIGSYICSCHNGYTLL 208 (330)
Q Consensus 184 ~~C~~-~C~n~~gsy~C~C~~G~~l~ 208 (330)
..|.+ .|.+..++|.|.|++||.+.
T Consensus 6 ~~C~~~~C~~~~~~~~C~C~~g~~g~ 31 (35)
T smart00181 6 GPCSNGTCINTPGSYTCSCPPGYTGD 31 (35)
T ss_pred CCCCCCEEECCCCCeEeECCCCCccC
Confidence 45666 79999999999999999854
No 37
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=96.42 E-value=0.0032 Score=33.08 Aligned_cols=21 Identities=38% Similarity=0.838 Sum_probs=18.2
Q ss_pred cccccccC-CceeeeccCCeEE
Q psy8443 187 QHECRNTI-GSYICSCHNGYTL 207 (330)
Q Consensus 187 ~~~C~n~~-gsy~C~C~~G~~l 207 (330)
.++|++.. ++|.|.|++||..
T Consensus 9 ~g~C~~~~~~~y~C~C~~G~~G 30 (32)
T PF00008_consen 9 GGTCIDLPGGGYTCECPPGYTG 30 (32)
T ss_dssp TEEEEEESTSEEEEEEBTTEES
T ss_pred CeEEEeCCCCCEEeECCCCCcc
Confidence 45799998 9999999999983
No 38
>KOG1217|consensus
Probab=96.38 E-value=0.012 Score=53.39 Aligned_cols=34 Identities=38% Similarity=0.943 Sum_probs=30.0
Q ss_pred eeEeeccccCCCCCCee--eEEeecceEEEecCCCcE
Q psy8443 7 RWFKFDECALEDHGCEH--TCKNILGGYECSCKIGYE 41 (330)
Q Consensus 7 ~C~dideC~~~~~~C~~--~C~n~~gsy~C~C~~G~~ 41 (330)
.|.++++|..... |.+ +|.+..++|.|.|++||.
T Consensus 267 ~~~~~~~C~~~~~-c~~~~~C~~~~~~~~C~C~~g~~ 302 (487)
T KOG1217|consen 267 TCVDVDSCALIAS-CPNGGTCVNVPGSYRCTCPPGFT 302 (487)
T ss_pred eeeeccccCCCCc-cCCCCeeecCCCcceeeCCCCCC
Confidence 5789999998654 665 999999999999999998
No 39
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=96.31 E-value=0.0049 Score=33.65 Aligned_cols=31 Identities=52% Similarity=1.026 Sum_probs=23.8
Q ss_pred cCccccCCCcc--cccccccCCceeeeccCCeEE
Q psy8443 176 KDECMTNNGGC--QHECRNTIGSYICSCHNGYTL 207 (330)
Q Consensus 176 ~~eC~~~~~~C--~~~C~n~~gsy~C~C~~G~~l 207 (330)
+++|... ..| .+.|.+..++|.|.|+.||..
T Consensus 2 ~~~C~~~-~~C~~~~~C~~~~~~~~C~C~~g~~g 34 (38)
T cd00054 2 IDECASG-NPCQNGGTCVNTVGSYRCSCPPGYTG 34 (38)
T ss_pred cccCCCC-CCcCCCCEeECCCCCeEeECCCCCcC
Confidence 4667653 345 456999999999999999973
No 40
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=96.08 E-value=0.0046 Score=25.04 Aligned_cols=13 Identities=38% Similarity=1.157 Sum_probs=9.8
Q ss_pred EEecCCCcEEcCCCCcc
Q psy8443 33 ECSCKIGYELHSDGKIC 49 (330)
Q Consensus 33 ~C~C~~G~~l~~dg~~C 49 (330)
.|.|++||+ |..|
T Consensus 1 ~C~C~~G~~----G~~C 13 (13)
T PF12661_consen 1 TCQCPPGWT----GPNC 13 (13)
T ss_dssp EEEE-TTEE----TTTT
T ss_pred CccCcCCCc----CCCC
Confidence 589999999 7665
No 41
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=95.13 E-value=0.021 Score=30.48 Aligned_cols=25 Identities=48% Similarity=0.865 Sum_probs=20.3
Q ss_pred Cccc--ccccccCCceeeeccCCeEEc
Q psy8443 184 GGCQ--HECRNTIGSYICSCHNGYTLL 208 (330)
Q Consensus 184 ~~C~--~~C~n~~gsy~C~C~~G~~l~ 208 (330)
..|. +.|++..++|.|.|+.||...
T Consensus 6 ~~C~~~~~C~~~~~~~~C~C~~g~~g~ 32 (36)
T cd00053 6 NPCSNGGTCVNTPGSYRCVCPPGYTGD 32 (36)
T ss_pred CCCCCCCEEecCCCCeEeECCCCCccc
Confidence 3454 569999999999999999844
No 42
>KOG1217|consensus
Probab=94.51 E-value=0.14 Score=46.42 Aligned_cols=46 Identities=28% Similarity=0.472 Sum_probs=34.2
Q ss_pred ccCceEE---EecccCccccCCC-cccccccccCCceeeeccCCeEEccC
Q psy8443 165 KSGFSAF---FFTDKDECMTNNG-GCQHECRNTIGSYICSCHNGYTLLEN 210 (330)
Q Consensus 165 ~~Gf~~~---~~~~~~eC~~~~~-~C~~~C~n~~gsy~C~C~~G~~l~~~ 210 (330)
..||.+. .+.++++|..... ...++|.+..+.|.|.|++||.....
T Consensus 257 ~~g~~~~~~~~~~~~~~C~~~~~c~~~~~C~~~~~~~~C~C~~g~~g~~~ 306 (487)
T KOG1217|consen 257 PEGYTGDACVTCVDVDSCALIASCPNGGTCVNVPGSYRCTCPPGFTGRLC 306 (487)
T ss_pred CCCccccccceeeeccccCCCCccCCCCeeecCCCcceeeCCCCCCCCCC
Confidence 4444443 3568899998864 33457999999999999999997654
No 43
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.
Probab=94.10 E-value=0.074 Score=28.55 Aligned_cols=28 Identities=36% Similarity=0.828 Sum_probs=19.2
Q ss_pred CCee--eEEeec-ceEEEecCCCcEEcCCCCcc
Q psy8443 20 GCEH--TCKNIL-GGYECSCKIGYELHSDGKIC 49 (330)
Q Consensus 20 ~C~~--~C~n~~-gsy~C~C~~G~~l~~dg~~C 49 (330)
.|+. .|++.. |++.|.|..||... +..|
T Consensus 6 ~cP~NA~C~~~~dG~eecrCllgyk~~--~~~C 36 (37)
T PF12946_consen 6 KCPANAGCFRYDDGSEECRCLLGYKKV--GGKC 36 (37)
T ss_dssp ---TTEEEEEETTSEEEEEE-TTEEEE--TTEE
T ss_pred cCCCCcccEEcCCCCEEEEeeCCcccc--CCCc
Confidence 4543 899887 99999999999953 4445
No 44
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=93.43 E-value=0.1 Score=27.24 Aligned_cols=25 Identities=32% Similarity=0.748 Sum_probs=17.7
Q ss_pred cccccccccCCceeeeccCCeEEccC
Q psy8443 185 GCQHECRNTIGSYICSCHNGYTLLEN 210 (330)
Q Consensus 185 ~C~~~C~n~~gsy~C~C~~G~~l~~~ 210 (330)
.|.+.|...... .|.|+.||.+.++
T Consensus 7 ~CpA~CDpn~~~-~C~CPeGyIlde~ 31 (34)
T PF09064_consen 7 ECPADCDPNSPG-QCFCPEGYILDEG 31 (34)
T ss_pred cCCCccCCCCCC-ceeCCCceEecCC
Confidence 466666654433 8999999998754
No 45
>KOG1219|consensus
Probab=93.10 E-value=0.07 Score=55.18 Aligned_cols=44 Identities=27% Similarity=0.498 Sum_probs=35.9
Q ss_pred cccCceEEEec-ccCccccCCCcccccccccCCceeeeccCCeEE
Q psy8443 164 QKSGFSAFFFT-DKDECMTNNGGCQHECRNTIGSYICSCHNGYTL 207 (330)
Q Consensus 164 ~~~Gf~~~~~~-~~~eC~~~~~~C~~~C~n~~gsy~C~C~~G~~l 207 (330)
+..-|.+..|. ++..|..+++.-+++|....++|.|.|+.||+.
T Consensus 3890 CpsqysG~~CEi~~epC~snPC~~GgtCip~~n~f~CnC~~gyTG 3934 (4289)
T KOG1219|consen 3890 CPSQYSGNHCEIDLEPCASNPCLTGGTCIPFYNGFLCNCPNGYTG 3934 (4289)
T ss_pred CcccccCcccccccccccCCCCCCCCEEEecCCCeeEeCCCCccC
Confidence 33444555554 788899999888899999999999999999983
No 46
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=92.64 E-value=0.15 Score=26.66 Aligned_cols=24 Identities=38% Similarity=0.826 Sum_probs=17.9
Q ss_pred CCee--eEEeecceEEEecCCCcEEcCCCCcc
Q psy8443 20 GCEH--TCKNILGGYECSCKIGYELHSDGKIC 49 (330)
Q Consensus 20 ~C~~--~C~n~~gsy~C~C~~G~~l~~dg~~C 49 (330)
.|.. +|++. ..+|.|++||+ |..|
T Consensus 7 ~C~~~G~C~~~--~g~C~C~~g~~----G~~C 32 (32)
T PF07974_consen 7 ICSGHGTCVSP--CGRCVCDSGYT----GPDC 32 (32)
T ss_pred ccCCCCEEeCC--CCEEECCCCCc----CCCC
Confidence 4654 88865 57899999998 6554
No 47
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.
Probab=91.27 E-value=0.25 Score=26.58 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=17.8
Q ss_pred cccccccC-CceeeeccCCeEEcc
Q psy8443 187 QHECRNTI-GSYICSCHNGYTLLE 209 (330)
Q Consensus 187 ~~~C~n~~-gsy~C~C~~G~~l~~ 209 (330)
...|.+.. |++.|.|..||....
T Consensus 10 NA~C~~~~dG~eecrCllgyk~~~ 33 (37)
T PF12946_consen 10 NAGCFRYDDGSEECRCLLGYKKVG 33 (37)
T ss_dssp TEEEEEETTSEEEEEE-TTEEEET
T ss_pred CcccEEcCCCCEEEEeeCCccccC
Confidence 45688776 999999999999653
No 48
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=85.88 E-value=0.79 Score=32.31 Aligned_cols=37 Identities=35% Similarity=0.750 Sum_probs=27.9
Q ss_pred eeccccCC-CCCCee-eEEeec--ceEEEecCCCcEEcCCCCccc
Q psy8443 10 KFDECALE-DHGCEH-TCKNIL--GGYECSCKIGYELHSDGKICV 50 (330)
Q Consensus 10 dideC~~~-~~~C~~-~C~n~~--gsy~C~C~~G~~l~~dg~~C~ 50 (330)
||.+|... .+-|-| +|.-.+ ..+.|.|+.||. |..|+
T Consensus 41 ~i~~Cp~ey~~YClHG~C~yI~dl~~~~CrC~~GYt----GeRCE 81 (139)
T PHA03099 41 AIRLCGPEGDGYCLHGDCIHARDIDGMYCRCSHGYT----GIRCQ 81 (139)
T ss_pred ccccCChhhCCEeECCEEEeeccCCCceeECCCCcc----ccccc
Confidence 45667643 345766 888775 789999999999 99994
No 49
>PF02408 CUB_2: CUB-like domain; InterPro: IPR003366 This domain is found in a family of hypothetical Caenorhabditis elegans proteins. The aligned region has no known function nor do any of the proteins which possess it. However, this domain is related to the CUB domain (IPR000859 from INTERPRO). The aligned region is approximately 130 amino acids long and contains two conserved cysteine residues.
Probab=78.56 E-value=21 Score=25.38 Aligned_cols=43 Identities=21% Similarity=0.437 Sum_probs=31.2
Q ss_pred CCCCCCCCcEEEEEcCCCCEEEEEEeEEEecCCCCCCCCCCCceEEEEeCCCC
Q psy8443 77 DLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKIGD 129 (330)
Q Consensus 77 ~~~~~~~~C~~~i~~~~g~~~~l~~~~~~l~~~~~~~~~C~~d~l~i~~~~~~ 129 (330)
..++.+..|.|.|.+|.|+.+++.+..- +. . .|.+.+.|..+.
T Consensus 36 ~~~p~n~~C~y~i~iP~G~~a~v~~~~~-~~-------~--~d~i~v~D~~g~ 78 (120)
T PF02408_consen 36 PQFPANQNCTYQINIPKGYYAKVTLSAN-LN-------D--NDSITVTDSNGK 78 (120)
T ss_pred cccCCCCceEEEEEcCCceEEEEEEEEe-cC-------C--CCEEEEEecCCC
Confidence 3467899999999999999888876532 11 1 378888876543
No 50
>PHA02887 EGF-like protein; Provisional
Probab=73.47 E-value=2.7 Score=29.23 Aligned_cols=36 Identities=33% Similarity=0.814 Sum_probs=25.3
Q ss_pred eccccCC-CCCCee-eEEeec--ceEEEecCCCcEEcCCCCccc
Q psy8443 11 FDECALE-DHGCEH-TCKNIL--GGYECSCKIGYELHSDGKICV 50 (330)
Q Consensus 11 ideC~~~-~~~C~~-~C~n~~--gsy~C~C~~G~~l~~dg~~C~ 50 (330)
+++|... .+-|-| +|.-.+ ....|.|++||. |..|.
T Consensus 83 f~pC~~eyk~YCiHG~C~yI~dL~epsCrC~~GYt----G~RCE 122 (126)
T PHA02887 83 FEKCKNDFNDFCINGECMNIIDLDEKFCICNKGYT----GIRCD 122 (126)
T ss_pred ccccChHhhCEeeCCEEEccccCCCceeECCCCcc----cCCCC
Confidence 4566532 234655 887665 458999999999 88893
No 51
>KOG1215|consensus
Probab=69.51 E-value=3.8 Score=40.51 Aligned_cols=44 Identities=34% Similarity=0.736 Sum_probs=38.2
Q ss_pred eeEeeccccCCCCCCeeeEEeecceEEEecCCCcEEcCCCCccc
Q psy8443 7 RWFKFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICV 50 (330)
Q Consensus 7 ~C~dideC~~~~~~C~~~C~n~~gsy~C~C~~G~~l~~dg~~C~ 50 (330)
+....+.|...+..|.+.|...+....|.|+.|+.+..+++.|.
T Consensus 666 ~~~~~n~C~~~n~~c~~KOG~~p~~~~c~c~~~~~l~~~~~~C~ 709 (877)
T KOG1215|consen 666 RPTGVNPCESSNGGCSQLCLPRPQGSTCACPEGYRLSPDGKSCS 709 (877)
T ss_pred CCCCCCcccccCCCCCeeeecCCCCCeeeCCCCCeecCCCCeec
Confidence 45667889887678999999998877999999999999999994
No 52
>KOG1215|consensus
Probab=69.34 E-value=3.8 Score=40.55 Aligned_cols=42 Identities=31% Similarity=0.816 Sum_probs=35.5
Q ss_pred ccCccccCCCcccccccccCCceeeeccCCeEEccCCCCccc
Q psy8443 175 DKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKE 216 (330)
Q Consensus 175 ~~~eC~~~~~~C~~~C~n~~gsy~C~C~~G~~l~~~~~~C~~ 216 (330)
..+.|..+++.|.+.|........|.|+.|+.+..++..|..
T Consensus 669 ~~n~C~~~n~~c~~KOG~~p~~~~c~c~~~~~l~~~~~~C~~ 710 (877)
T KOG1215|consen 669 GVNPCESSNGGCSQLCLPRPQGSTCACPEGYRLSPDGKSCSS 710 (877)
T ss_pred CCCcccccCCCCCeeeecCCCCCeeeCCCCCeecCCCCeecC
Confidence 456677777778888988887779999999999999999975
No 53
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=68.55 E-value=5.1 Score=30.71 Aligned_cols=47 Identities=30% Similarity=0.600 Sum_probs=29.5
Q ss_pred cceeeeeEeeccccCC---CCCCee--eEEeec-----ceEEEecCCCcEEcCCCCccc
Q psy8443 2 IKLRIRWFKFDECALE---DHGCEH--TCKNIL-----GGYECSCKIGYELHSDGKICV 50 (330)
Q Consensus 2 ~~~~~~C~dideC~~~---~~~C~~--~C~n~~-----gsy~C~C~~G~~l~~dg~~C~ 50 (330)
++-+-+|....+|... ...|.. .|.+.. ..|.|.|.+||.+..+ .|+
T Consensus 30 l~~EntCE~kv~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~~~~~--vCv 86 (197)
T PF06247_consen 30 LKNENTCEEKVECDKLENVNKPCGDYAKCINQANKGEERAYKCDCINGYILKQG--VCV 86 (197)
T ss_dssp EEETTEEEE----SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TTEEESSS--SEE
T ss_pred EccccccccceecCcccccCccccchhhhhcCCCcccceeEEEecccCceeeCC--eEc
Confidence 3455688888899752 236875 999886 4799999999996543 786
No 54
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=59.83 E-value=6.3 Score=27.56 Aligned_cols=29 Identities=34% Similarity=0.700 Sum_probs=21.1
Q ss_pred eccccCCCCCCee--eEEeecceEEEecCCCcE
Q psy8443 11 FDECALEDHGCEH--TCKNILGGYECSCKIGYE 41 (330)
Q Consensus 11 ideC~~~~~~C~~--~C~n~~gsy~C~C~~G~~ 41 (330)
.|.|.. ...|.. .| |...+-.|.|.+||+
T Consensus 77 ~d~Cd~-y~~CG~~g~C-~~~~~~~C~Cl~GF~ 107 (110)
T PF00954_consen 77 KDQCDV-YGFCGPNGIC-NSNNSPKCSCLPGFE 107 (110)
T ss_pred ccCCCC-ccccCCccEe-CCCCCCceECCCCcC
Confidence 467765 356875 89 445566799999997
No 55
>PF05547 Peptidase_M6: Immune inhibitor A peptidase M6; InterPro: IPR008757 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M6 (immune inhibitor A family, clan MA(M)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. InhA of Bacillus thuringiensis (an entomopathogenic bacterium) specifically cleaves antibacterial peptides produced by insect hosts []. B. thuringiensis is highly resistant to the insect immune system due to its production of two factors, inhibitor A (InhA or InA) and inhibitor B (InhB or InB), which selectively block the humoral defence system developed by insects against Escherichia coli and Bacillus cereus []. B. thuringiensis is especially resistant to cecropins and attacins, which are the main classes of inducible antibacterial peptides in various lepidopterans and dipterans [], []. InhA has been shown to specifically hydrolyze cecropins and attacins in the immune hemolymph of Hyalophora cecropia (Cecropia moth) in vitro []. However, it has been suggested that the role of InhA in resistance to the humoral defence system is not consistent with the time course of InhA production []. B. thuringiensis has two proteins belonging to this group (InhA and InhA2), and it has been shown that InhA2 has a vital role in virulence when the host is infected via the oral route []. The B. cereus member has been found as an exosporium component from endospores []. B. thuringiensis InhA is induced at the onset of sporulation and is regulated by Spo0A and AbrB []. Vibrio cholerae PrtV is thought to be encoded in the pathogenicity island []. However, PrtV mutants did not exhibit a reduced virulence phenotype, and thus PrtV is not an indispensable virulence factor []. Annotation note: due to the presence of PKD repeats in some of the members of this group (e.g., V. cholerae VCA0223), spurious similarity hits may appear (involving unrelated proteins), which may lead to the erroneous transfer of functional annotations and protein names. Also, please note that related Bacillus subtilis Bacillopeptidase F (Bpr or Bpf) contains two different protease domains: N-terminal IPR000209 from INTERPRO (peptidase S8, subtilase, a subtilisin-like serine protease) and this C-terminal domain (peptidase M6), which may also complicate annotation.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=59.66 E-value=48 Score=31.45 Aligned_cols=29 Identities=17% Similarity=0.372 Sum_probs=21.8
Q ss_pred EEEeCCCCEEEEEEEE-EeeCCCCCCCCceEEEE
Q psy8443 248 HFTTTPGHRIKLVFQE-FELEPHQTCAYDHVVMY 280 (330)
Q Consensus 248 ~i~~~~~~~i~l~f~~-~~l~~~~~C~~d~l~i~ 280 (330)
.|..|......|.|.. +++|. .+||+.|.
T Consensus 359 ~vdLp~~s~AtLsfk~wydIE~----dyDy~~Ve 388 (645)
T PF05547_consen 359 SVDLPAASSATLSFKAWYDIEA----DYDYAYVE 388 (645)
T ss_pred eeccCCCCCeEEEeehheeccc----CCceEEEE
Confidence 4555666678899875 99998 58888777
No 56
>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates. In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.
Probab=51.92 E-value=16 Score=22.60 Aligned_cols=22 Identities=36% Similarity=1.002 Sum_probs=10.5
Q ss_pred CCeeeEEee---cceEEEe------cCCCcE
Q psy8443 20 GCEHTCKNI---LGGYECS------CKIGYE 41 (330)
Q Consensus 20 ~C~~~C~n~---~gsy~C~------C~~G~~ 41 (330)
.|...|... .|.|+|. |.+||.
T Consensus 29 ~C~~~C~~~~d~~ghy~Cd~~G~~~C~~Gw~ 59 (63)
T PF01414_consen 29 NCSKFCKPRDDSFGHYTCDSNGNKVCLPGWT 59 (63)
T ss_dssp TT-EE---EEETTEEEEE-SS--EEE-TTEE
T ss_pred cccCCcCCCcCCcCCcccCCCCCCCCCCCCc
Confidence 466677655 5677774 666666
No 57
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=51.29 E-value=12 Score=21.80 Aligned_cols=11 Identities=36% Similarity=0.791 Sum_probs=9.0
Q ss_pred EEEecCCCcEE
Q psy8443 32 YECSCKIGYEL 42 (330)
Q Consensus 32 y~C~C~~G~~l 42 (330)
-.|.|++||..
T Consensus 37 g~C~C~~g~~~ 47 (52)
T PF01683_consen 37 GRCQCPPGYVE 47 (52)
T ss_pred CEeECCCCCEe
Confidence 37999999974
No 58
>smart00051 DSL delta serrate ligand.
Probab=45.34 E-value=11 Score=23.33 Aligned_cols=6 Identities=33% Similarity=0.855 Sum_probs=3.0
Q ss_pred cCCCcE
Q psy8443 36 CKIGYE 41 (330)
Q Consensus 36 C~~G~~ 41 (330)
|.+||.
T Consensus 54 C~~Gw~ 59 (63)
T smart00051 54 CLEGWM 59 (63)
T ss_pred cCCCCc
Confidence 455554
No 59
>PF14380 WAK_assoc: Wall-associated receptor kinase C-terminal
Probab=44.86 E-value=32 Score=23.22 Aligned_cols=39 Identities=28% Similarity=0.650 Sum_probs=25.2
Q ss_pred cccCceEEEec---ccCccccCCCcccccccccCCceeeeccCC
Q psy8443 164 QKSGFSAFFFT---DKDECMTNNGGCQHECRNTIGSYICSCHNG 204 (330)
Q Consensus 164 ~~~Gf~~~~~~---~~~eC~~~~~~C~~~C~n~~gsy~C~C~~G 204 (330)
-..||.+.|.. +=.+|....+.|...-. ...|.|.|+.|
T Consensus 52 L~~GF~L~w~~~~~~C~~C~~SgG~Cgy~~~--~~~f~C~C~dg 93 (94)
T PF14380_consen 52 LKKGFELEWNADSGDCRECEASGGRCGYDSN--SEQFTCFCSDG 93 (94)
T ss_pred HhcCcEEEEeCCCCcCcChhcCCCEeCCCCC--CceEEEECCCC
Confidence 46899999984 34455555555544322 36788988876
No 60
>PF01826 TIL: Trypsin Inhibitor like cysteine rich domain; InterPro: IPR002919 This domain is found in proteinase inhibitors as well as in many extracellular proteins. The domain typically contains ten cysteine residues that form five disulphide bonds. The cysteine residues that form the disulphide bonds are 1-7, 2-6, 3-5, 4-10 and 8-9. This inhibitor domain belongs to MEROPS inhibitor family I8 (clan IA). Proteins containing this domain inhibit peptidases belonging to families S1 (IPR001254 from INTERPRO), S8 (IPR000209 from INTERPRO), and M4 (IPR001570 from INTERPRO) [] and are restricted to the chordata, nematoda, arthropoda and echinodermata. Examples of proteins containing this domain are: chymotrypsin/elastase inhibitor from Ascaris suum (pig roundworm) Acp62F protein from Drosophila melanogaster Bombina trypsin inhibitor from Bombina maxima (large-webbed bell toad) Bombyx subtilisin inhibitor from Bombyx mori (silk moth) von Willebrand factor ; PDB: 2P3F_N 1HX2_A 1CCV_A 1EAI_D 2H9E_C 1COU_A 1ATE_A 1ATB_A 1ATD_A 1ATA_A ....
Probab=42.71 E-value=20 Score=21.23 Aligned_cols=17 Identities=35% Similarity=0.804 Sum_probs=13.5
Q ss_pred EecCCCcEEcCCCCcccc
Q psy8443 34 CSCKIGYELHSDGKICVG 51 (330)
Q Consensus 34 C~C~~G~~l~~dg~~C~~ 51 (330)
|.|++||.+..+ ..|+.
T Consensus 35 C~C~~G~v~~~~-~~CV~ 51 (55)
T PF01826_consen 35 CFCPPGYVRNDN-GRCVP 51 (55)
T ss_dssp EEETTTEEEETT-SEEEE
T ss_pred CCCCCCeeEcCC-CCEEc
Confidence 999999987665 68853
No 61
>KOG3516|consensus
Probab=42.52 E-value=16 Score=36.51 Aligned_cols=38 Identities=34% Similarity=0.833 Sum_probs=30.8
Q ss_pred eeEeeccccCCCCCCee--eEEeecceEEEecC-CCcEEcCCCCccc
Q psy8443 7 RWFKFDECALEDHGCEH--TCKNILGGYECSCK-IGYELHSDGKICV 50 (330)
Q Consensus 7 ~C~dideC~~~~~~C~~--~C~n~~gsy~C~C~-~G~~l~~dg~~C~ 50 (330)
.|.-+|.|+. .+|+| .|.-....|.|.|. .||. |.+|-
T Consensus 541 ~C~i~drClP--N~CehgG~C~Qs~~~f~C~C~~TGY~----GatCH 581 (1306)
T KOG3516|consen 541 MCGISDRCLP--NPCEHGGKCSQSWDDFECNCELTGYK----GATCH 581 (1306)
T ss_pred ccccccccCC--ccccCCCcccccccceeEeccccccc----ccccc
Confidence 4666777764 57887 89888899999999 8998 88884
No 62
>PF13948 DUF4215: Domain of unknown function (DUF4215)
Probab=36.88 E-value=34 Score=19.63 Aligned_cols=22 Identities=32% Similarity=0.786 Sum_probs=16.7
Q ss_pred ecCCCcEEcCCCCccccccccccCCCCe
Q psy8443 35 SCKIGYELHSDGKICVGSVKARDACGGI 62 (330)
Q Consensus 35 ~C~~G~~l~~dg~~C~~~~~~~~~C~~~ 62 (330)
.|..||.+......| ...||..
T Consensus 3 ~C~~G~~l~~~~~~C------~~~CGDg 24 (47)
T PF13948_consen 3 QCQDGYYLNQNNNKC------EPICGDG 24 (47)
T ss_pred cccCccEEcCCCCcc------ccccCCC
Confidence 477899988777888 6678764
No 63
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=30.41 E-value=41 Score=19.25 Aligned_cols=20 Identities=40% Similarity=0.881 Sum_probs=16.0
Q ss_pred eEEeecceEEEecCCCcEEcCCCCcc
Q psy8443 24 TCKNILGGYECSCKIGYELHSDGKIC 49 (330)
Q Consensus 24 ~C~n~~gsy~C~C~~G~~l~~dg~~C 49 (330)
.|.. ...+|.|+++|+ |..|
T Consensus 12 ~C~~--~~G~C~C~~~~~----G~~C 31 (49)
T PF00053_consen 12 TCDP--STGQCVCKPGTT----GPRC 31 (49)
T ss_dssp SEEE--TCEEESBSTTEE----STTS
T ss_pred cccC--CCCEEecccccc----CCcC
Confidence 4544 556899999999 8899
No 64
>PF10413 Rhodopsin_N: Amino terminal of the G-protein receptor rhodopsin; InterPro: IPR019477 Rhodopsin is the archetypal G-protein-coupled receptor. Such receptors participate in virtually all physiological processes as signalling molecules. They utilise heterotrimeric guanosine triphosphate (GTP)-binding proteins to transduce extracellular signals to intracellular events. Rhodopsin is important because of the pivotal role it plays in visual signal transduction. It is a dimeric transmembrane protein whose intradiskal surface consists of an N-terminal domain and three loops connecting six of the seven transmembrane helices. The N-terminal domain is a compact alpha-helical region with breaks and bends at proline residues outside the membrane []. This entry represents the N-terminal domain, while the transmembrane region is represented by (IPR000276 from INTERPRO). The N-terminal domain is extracellular is and is necessary for successful dimerisation and molecular stability []. ; PDB: 3PXO_A 4A4M_A 3OAX_A 2J4Y_A 2HPY_A 1F88_B 3PQR_A 1L9H_B 2I37_B 1GZM_B ....
Probab=29.55 E-value=8.7 Score=20.22 Aligned_cols=17 Identities=35% Similarity=0.905 Sum_probs=11.5
Q ss_pred ecCcceeeCC-CCCCCCC
Q psy8443 224 TAPNGVIKTP-NHPDYYP 240 (330)
Q Consensus 224 ~~~~g~i~sp-~~p~~y~ 240 (330)
.+.+|++.|| .||+.|-
T Consensus 13 sN~TGvVRsP~eYpQYYL 30 (36)
T PF10413_consen 13 SNRTGVVRSPYEYPQYYL 30 (36)
T ss_dssp TGTTSHHS-TTTSHHTTT
T ss_pred ccccccccCCCcCcceee
Confidence 5678999998 4676663
No 65
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=20.40 E-value=1.3e+02 Score=23.35 Aligned_cols=26 Identities=38% Similarity=0.896 Sum_probs=19.1
Q ss_pred eEEeecceEEEecCCCcEEcCCCCcc
Q psy8443 24 TCKNILGGYECSCKIGYELHSDGKIC 49 (330)
Q Consensus 24 ~C~n~~gsy~C~C~~G~~l~~dg~~C 49 (330)
+|..+.+-|+|.|.+|+...+.+..+
T Consensus 143 ~CK~~~~~Y~C~~~~~~~~~~~~~~~ 168 (197)
T PF06247_consen 143 ECKLVDGYYKCVCKEGFPGDGEGEGC 168 (197)
T ss_dssp EEEEETTEEEEEE-TT-EEETTT---
T ss_pred ceeeeCcEEEeecCCCCCCCCCcccc
Confidence 89999999999999999977776555
No 66
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=20.31 E-value=71 Score=18.09 Aligned_cols=15 Identities=33% Similarity=0.844 Sum_probs=12.5
Q ss_pred eEEEecCCCcEEcCCCCcc
Q psy8443 31 GYECSCKIGYELHSDGKIC 49 (330)
Q Consensus 31 sy~C~C~~G~~l~~dg~~C 49 (330)
+-+|.|+++++ |..|
T Consensus 17 ~G~C~C~~~~~----G~~C 31 (46)
T smart00180 17 TGQCECKPNVT----GRRC 31 (46)
T ss_pred CCEEECCCCCC----CCCC
Confidence 34899999998 7888
Done!