RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8443
(330 letters)
>gnl|CDD|215916 pfam00431, CUB, CUB domain.
Length = 110
Score = 138 bits (349), Expect = 7e-41
Identities = 48/110 (43%), Positives = 69/110 (62%)
Query: 219 CKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVV 278
C +T +G I +PN+P+ YP ++C+W PG+RI L FQ+F+LE H C YD+V
Sbjct: 1 CGGVLTESSGSITSPNYPNSYPPNKDCVWTIRAPPGYRISLTFQDFDLEDHDECGYDYVE 60
Query: 279 MYDGDSPDSLTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATH 328
+ DG S LGRFCG P I + SNQ+ + F SD+S+ ++GF AT+
Sbjct: 61 IRDGLPSSSPLLGRFCGSGPPEDIRSTSNQMTIKFVSDSSISKRGFKATY 110
Score = 128 bits (325), Expect = 3e-37
Identities = 50/114 (43%), Positives = 67/114 (58%), Gaps = 4/114 (3%)
Query: 59 CGGILKHSNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEY 118
CGG+L S+G++TSP++P+ Y NK C+W I APP YRISL F FD+E C Y
Sbjct: 1 CGGVLTESSGSITSPNYPNSYPPNKDCVWTIRAPPGYRISLTFQDFDLED----HDECGY 56
Query: 119 DNLTVFSKIGDSFKSQGVFCGSKLPPVILSEGNALRIEFHSDNSVQKSGFSAFF 172
D + + + S G FCGS P I S N + I+F SD+S+ K GF A +
Sbjct: 57 DYVEIRDGLPSSSPLLGRFCGSGPPEDIRSTSNQMTIKFVSDSSISKRGFKATY 110
>gnl|CDD|238001 cd00041, CUB, CUB domain; extracellular domain; present in proteins
mostly known to be involved in development; not found in
prokaryotes, plants and yeast.
Length = 113
Score = 130 bits (328), Expect = 1e-37
Identities = 51/113 (45%), Positives = 74/113 (65%), Gaps = 1/113 (0%)
Query: 219 CKYEITAP-NGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHV 277
C +TA +G I +PN+P+ YP+ C+W PG+RI+L F++F+LE C+YD++
Sbjct: 1 CGGTLTASTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLESSPNCSYDYL 60
Query: 278 VMYDGDSPDSLTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATHTT 330
+YDG S S LGRFCG LP PII+ N L + F+SD+SV +GF AT++
Sbjct: 61 EIYDGPSTSSPLLGRFCGSTLPPPIISSGNSLTVRFRSDSSVTGRGFKATYSA 113
Score = 125 bits (315), Expect = 8e-36
Identities = 51/117 (43%), Positives = 69/117 (58%), Gaps = 5/117 (4%)
Query: 59 CGGILK-HSNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCE 117
CGG L ++GT++SP++P+ Y N C+W I APP YRI L F FD+E + +C
Sbjct: 1 CGGTLTASTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLESSP----NCS 56
Query: 118 YDNLTVFSKIGDSFKSQGVFCGSKLPPVILSEGNALRIEFHSDNSVQKSGFSAFFFT 174
YD L ++ S G FCGS LPP I+S GN+L + F SD+SV GF A +
Sbjct: 57 YDYLEIYDGPSTSSPLLGRFCGSTLPPPIISSGNSLTVRFRSDSSVTGRGFKATYSA 113
>gnl|CDD|214483 smart00042, CUB, Domain first found in C1r, C1s, uEGF, and bone
morphogenetic protein. This domain is found mostly
among developmentally-regulated proteins. Spermadhesins
contain only this domain.
Length = 102
Score = 121 bits (305), Expect = 2e-34
Identities = 48/102 (47%), Positives = 67/102 (65%), Gaps = 1/102 (0%)
Query: 228 GVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVVMYDGDSPDS 287
G I +PN+P YP+ +C+W PG+RI+L F +F+LE C YD+V +YDG S S
Sbjct: 1 GTITSPNYPQSYPNNLDCVWTIRAPPGYRIELQFTDFDLESSDNCEYDYVEIYDGPSASS 60
Query: 288 LTLGRFCGIKLPYPIIT-GSNQLYMMFKSDASVQRKGFIATH 328
LGRFCG + P P+I+ SN L + F SD+SVQ++GF A +
Sbjct: 61 PLLGRFCGSEAPPPVISSSSNSLTLTFVSDSSVQKRGFSARY 102
Score = 119 bits (300), Expect = 1e-33
Identities = 51/106 (48%), Positives = 67/106 (63%), Gaps = 5/106 (4%)
Query: 68 GTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKI 127
GT+TSP++P Y N C+W I APP YRI L FT FD+E ++ +CEYD + ++
Sbjct: 1 GTITSPNYPQSYPNNLDCVWTIRAPPGYRIELQFTDFDLESSD----NCEYDYVEIYDGP 56
Query: 128 GDSFKSQGVFCGSKLPP-VILSEGNALRIEFHSDNSVQKSGFSAFF 172
S G FCGS+ PP VI S N+L + F SD+SVQK GFSA +
Sbjct: 57 SASSPLLGRFCGSEAPPPVISSSSNSLTLTFVSDSSVQKRGFSARY 102
>gnl|CDD|214542 smart00179, EGF_CA, Calcium-binding EGF-like domain.
Length = 39
Score = 43.0 bits (102), Expect = 4e-06
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Query: 175 DKDECMTNNGGCQH--ECRNTIGSYICSCHNGYTLLENGHDCK 215
D DEC + N CQ+ C NT+GSY C C GYT +G +C+
Sbjct: 1 DIDECASGNP-CQNGGTCVNTVGSYRCECPPGYT---DGRNCE 39
Score = 39.2 bits (92), Expect = 7e-05
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 12 DECALEDHGCEH--TCKNILGGYECSCKIGYELHSDGKICV 50
DECA + C++ TC N +G Y C C GY DG+ C
Sbjct: 3 DECA-SGNPCQNGGTCVNTVGSYRCECPPGYT---DGRNCE 39
>gnl|CDD|205157 pfam12947, EGF_3, EGF domain. This family includes a variety of
EGF-like domain homologues. This family includes the
C-terminal domain of the malaria parasite MSP1 protein.
Length = 36
Score = 42.5 bits (101), Expect = 4e-06
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 179 CMTNNGGC-QH-ECRNTIGSYICSCHNGYTLLENGHDC 214
C NNGGC + C NT GS+ C+C +GYT +G C
Sbjct: 1 CAENNGGCHPNATCTNTGGSFTCTCKSGYTG--DGVTC 36
Score = 33.7 bits (78), Expect = 0.007
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 14 CALEDHGC-EH-TCKNILGGYECSCKIGYELHSDGKIC 49
CA + GC + TC N G + C+CK GY DG C
Sbjct: 1 CAENNGGCHPNATCTNTGGSFTCTCKSGYTG--DGVTC 36
>gnl|CDD|238752 cd01475, vWA_Matrilin, VWA_Matrilin: In cartilaginous plate,
extracellular matrix molecules mediate cell-matrix and
matrix-matrix interactions thereby providing tissue
integrity. Some members of the matrilin family are
expressed specifically in developing cartilage
rudiments. The matrilin family consists of at least four
members. All the members of the matrilin family contain
VWA domains, EGF-like domains and a heptad repeat
coiled-coiled domain at the carboxy terminus which is
responsible for the oligomerization of the matrilins.
The VWA domains have been shown to be essential for
matrilin network formation by interacting with matrix
ligands.
Length = 224
Score = 46.6 bits (111), Expect = 5e-06
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 175 DKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENG 211
D C T + CQ C +T GSY+C+C GY LLE+
Sbjct: 186 VPDLCATLSHVCQQVCISTPGSYLCACTEGYALLEDN 222
Score = 45.1 bits (107), Expect = 1e-05
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 12 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGK 47
D CA H C+ C + G Y C+C GY L D K
Sbjct: 188 DLCATLSHVCQQVCISTPGSYLCACTEGYALLEDNK 223
>gnl|CDD|238011 cd00054, EGF_CA, Calcium-binding EGF-like domain, present in a
large number of membrane-bound and extracellular (mostly
animal) proteins. Many of these proteins require calcium
for their biological function and calcium-binding sites
have been found to be located at the N-terminus of
particular EGF-like domains; calcium-binding may be
crucial for numerous protein-protein interactions. Six
conserved core cysteines form three disulfide bridges as
in non calcium-binding EGF domains, whose structures are
very similar. EGF_CA can be found in tandem repeat
arrangements.
Length = 38
Score = 40.3 bits (95), Expect = 3e-05
Identities = 19/35 (54%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 175 DKDECMTNNGGCQH--ECRNTIGSYICSCHNGYTL 207
D DEC + N CQ+ C NT+GSY CSC GYT
Sbjct: 1 DIDECASGNP-CQNGGTCVNTVGSYRCSCPPGYTG 34
Score = 36.1 bits (84), Expect = 8e-04
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 12 DECALEDHGCEH--TCKNILGGYECSCKIGYELHS 44
DECA + C++ TC N +G Y CSC GY +
Sbjct: 3 DECA-SGNPCQNGGTCVNTVGSYRCSCPPGYTGRN 36
>gnl|CDD|219496 pfam07645, EGF_CA, Calcium-binding EGF domain.
Length = 42
Score = 38.1 bits (89), Expect = 2e-04
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 11 FDECALEDHGCEH--TCKNILGGYECSCKIGYELHSDGKIC 49
DECA H C C N +G +EC C GYE + DG C
Sbjct: 2 VDECADGTHNCPANTVCVNTIGSFECVCPDGYENNEDGTNC 42
Score = 33.1 bits (76), Expect = 0.012
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 175 DKDECMTNNGGCQH--ECRNTIGSYICSCHNGYTLLENGHDC 214
D DEC C C NTIGS+ C C +GY E+G +C
Sbjct: 1 DVDECADGTHNCPANTVCVNTIGSFECVCPDGYENNEDGTNC 42
>gnl|CDD|214544 smart00181, EGF, Epidermal growth factor-like domain.
Length = 35
Score = 36.3 bits (84), Expect = 8e-04
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 178 ECMTNNGGCQH-ECRNTIGSYICSCHNGYTLLEN 210
EC + G C + C NT GSY CSC GYT +
Sbjct: 1 EC-ASGGPCSNGTCINTPGSYTCSCPPGYTGDKR 33
Score = 32.1 bits (73), Expect = 0.023
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 13 ECALEDHGCEH-TCKNILGGYECSCKIGYEL 42
ECA C + TC N G Y CSC GY
Sbjct: 1 ECA-SGGPCSNGTCINTPGSYTCSCPPGYTG 30
>gnl|CDD|238010 cd00053, EGF, Epidermal growth factor domain, found in epidermal
growth factor (EGF) presents in a large number of
proteins, mostly animal; the list of proteins currently
known to contain one or more copies of an EGF-like
pattern is large and varied; the functional significance
of EGF-like domains in what appear to be unrelated
proteins is not yet clear; a common feature is that
these repeats are found in the extracellular domain of
membrane-bound proteins or in proteins known to be
secreted (exception: prostaglandin G/H synthase); the
domain includes six cysteine residues which have been
shown to be involved in disulfide bonds; the main
structure is a two-stranded beta-sheet followed by a
loop to a C-terminal short two-stranded sheet;
Subdomains between the conserved cysteines vary in
length; the region between the 5th and 6th cysteine
contains two conserved glycines of which at least one
is present in most EGF-like domains; a subset of
these bind calcium.
Length = 36
Score = 34.4 bits (79), Expect = 0.003
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 178 ECMTNNGGCQH--ECRNTIGSYICSCHNGYTLLEN 210
EC + C + C NT GSY C C GYT +
Sbjct: 1 EC-AASNPCSNGGTCVNTPGSYRCVCPPGYTGDRS 34
Score = 31.3 bits (71), Expect = 0.045
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 13 ECALEDHGCEH--TCKNILGGYECSCKIGYEL 42
ECA + C + TC N G Y C C GY
Sbjct: 1 ECA-ASNPCSNGGTCVNTPGSYRCVCPPGYTG 31
>gnl|CDD|221695 pfam12662, cEGF, Complement Clr-like EGF-like. cEGF, or
complement Clr-like EGF, domains have six conserved
cysteine residues disulfide-bonded into the
characteristic pattern 'ababcc'. They are found in
blood coagulation proteins such as fibrillin, Clr and
Cls, thrombomodulin, and the LDL receptor. The core
fold of the EGF domain consists of two small
beta-hairpins packed against each other. Two major
structural variants have been identified based on the
structural context of the C-terminal cysteine residue
of disulfide 'c' in the C-terminal hairpin: hEGFs and
cEGFs. In cEGFs the C-terminal thiol resides on the
C-terminal beta-sheet, resulting in long loop-lengths
between the cysteine residues of disulfide 'c',
typically C[10+]XC. These longer loop-lengths may have
arisen by selective cysteine loss from a four-disulfide
EGF template such as laminin or integrin. Tandem cEGF
domains have five linking residues between terminal
cysteines of adjacent domains. cEGF domains may or may
not bind calcium in the linker region. cEGF domains
with the consensus motif CXN4X[F,Y]XCXC are
hydroxylated exclusively on the asparagine residue.
Length = 24
Score = 33.2 bits (77), Expect = 0.006
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 31 GYECSCKIGYELHSDGKICV 50
Y CSC GY+L DG+ C
Sbjct: 1 SYTCSCPPGYQLSGDGRTCE 20
Score = 33.2 bits (77), Expect = 0.008
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 196 SYICSCHNGYTLLENGHDCK 215
SY CSC GY L +G C+
Sbjct: 1 SYTCSCPPGYQLSGDGRTCE 20
>gnl|CDD|215652 pfam00008, EGF, EGF-like domain. There is no clear separation
between noise and signal. pfam00053 is very similar, but
has 8 instead of 6 conserved cysteines. Includes some
cytokine receptors. The EGF domain misses the N-terminus
regions of the Ca2+ binding EGF domains (this is the
main reason of discrepancy between swiss-prot domain
start/end and Pfam). The family is hard to model due to
many similar but different sub-types of EGF domains.
Pfam certainly misses a number of EGF domains.
Length = 32
Score = 29.3 bits (66), Expect = 0.18
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 181 TNNGGCQH--ECRNTIGSYICSCHNGYT 206
+ N C + C +T G Y C C GYT
Sbjct: 2 SPNNPCSNGGTCVDTPGGYTCECPEGYT 29
Score = 26.2 bits (58), Expect = 2.5
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 17 EDHGCEH--TCKNILGGYECSCKIGY 40
++ C + TC + GGY C C GY
Sbjct: 3 PNNPCSNGGTCVDTPGGYTCECPEGY 28
>gnl|CDD|130691 TIGR01630, psiM2_ORF9, phage uncharacterized protein (putative
large terminase), C-terminal domain. This model
represents the C-terminal region of a set of phage
proteins typically about 400-500 amino acids in length,
although some members are considerably shorter. An
article on Methanobacterium phage Psi-M2 (PMID:9791169)
calls the member from that phage, ORF9, a putative large
terminase subunit, and ORF8 a candidate terminase small
subunit. Most proteins in this family have an apparent
P-loop nucleotide-binding sequence toward the N-terminus
[Mobile and extrachromosomal element functions, Prophage
functions].
Length = 142
Score = 30.6 bits (69), Expect = 0.64
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 7/43 (16%)
Query: 247 WHFTTTPGHRIKLVFQEFELEPHQTCAYDHVVMYDGDSPDSLT 289
F + Q E P + A+D D PD++T
Sbjct: 99 NVFPPNWAPWWPDLIQALEAFPREKAAHD-------DDPDAMT 134
>gnl|CDD|219564 pfam07771, TSGP1, Tick salivary peptide group 1. This contains a
group of peptides derived from a salivary gland cDNA
library of the tick Ixodes scapularis. Also present are
peptides from a related tick species, Ixodes ricinus.
They are characterized by a putative signal peptide
indicative of secretion and conserved cysteine residues.
Length = 120
Score = 29.8 bits (67), Expect = 0.77
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 16/69 (23%)
Query: 181 TNNGGCQHECRNTIGSYICSCHNGYTLLE------NGHD--CKEGGCKYEITAPNGVIKT 232
TN GC + C N + S + G+D C+ G C + T+
Sbjct: 34 TNREGCDYYCWNQDTN---SWDEFFFGDGETCFYNTGNDGVCQNGEC-HLTTSSGE---- 85
Query: 233 PNHPDYYPS 241
P+HPD +P
Sbjct: 86 PSHPDDHPP 94
>gnl|CDD|131756 TIGR02709, branched_ptb, branched-chain phosphotransacylase. This
model distinguishes branched-chain phosphotransacylases
like that of Enterococcus faecalis from closely related
subfamilies of phosphate butyryltransferase (EC
2.3.1.19) (TIGR02706) and phosphate acetyltransferase
(EC 2.3.1.8) (TIGR00651). Members of this family and of
TIGR02706 show considerable crossreactivity, and the
occurrence of a member of either family near an apparent
leucine dehydrogenase will suggest activity on branched
chain-acyl-CoA compounds [Energy metabolism, Amino acids
and amines].
Length = 271
Score = 30.9 bits (69), Expect = 0.88
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 8/47 (17%)
Query: 115 SCEYDNLTVF--SKIGDSFKSQGVFCGSKLPPVILSEGNALRIEFHS 159
+C Y +LT+F +K+G G G+K+P V+ S ++ +FHS
Sbjct: 224 NCLYKSLTLFGHAKVG------GTIVGTKVPVVLTSRSDSTESKFHS 264
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 30.0 bits (68), Expect = 1.7
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 255 HRIKLVFQEFELEPHQT 271
+I +VFQ F L PH+T
Sbjct: 106 KKISMVFQSFALLPHRT 122
>gnl|CDD|200520 cd11259, Sema_4D, The Sema domain, a protein interacting module, of
semaphorin 4D (Sema4D, also known as CD100).
Sema4D/CD100 is expressed in immune cells and plays
critical roles in immune response; it is thus termed an
"immune semaphorin". It is expressed by lymphocytes and
promotes the aggregation and survival of B lymphocytes
and inhibits cytokine-induced migration of immune cells
in vitro. Sema4D/CD100 knock-out mice demonstrate that
Sema4D is required for normal activation of B and T
lymphocytes. Sema4D increases B-cell and DC function
using either Plexin B1 or CD72 as receptors. The
function of Sema4D in immune response implicates its
role in infectious and noninfectious diseases. Sema4D
belongs to the class 4 transmembrane semaphorin family
of proteins. Semaphorins are regulatory molecules in the
development of the nervous system and in axonal
guidance. They also play important roles in other
biological processes, such as angiogenesis, immune
regulation, respiration systems and cancer. The Sema
domain is located at the N-terminus and contains four
disulfide bonds formed by eight conserved cysteine
residues. It serves as a receptor-recognition and
-binding module.
Length = 471
Score = 30.2 bits (68), Expect = 1.7
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 99 LNFTHFDIEGNNLFQSSCEYDNLTVFSKIGDSFKSQG 135
LN T + G N FQ +C+Y NLT F +G + +G
Sbjct: 88 LNDTFLYVCGTNAFQPTCDYLNLTSFRLLGKNEDGKG 124
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 28.8 bits (65), Expect = 3.4
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 255 HRIKLVFQEFELEPHQT 271
+I +VFQ F L PH+T
Sbjct: 102 KKISMVFQSFALLPHRT 118
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 27.9 bits (63), Expect = 6.0
Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 256 RIKLVFQEFELEPHQTCAYDHV 277
+I +VFQ+F L P +T Y++V
Sbjct: 80 QIGVVFQDFRLLPDRT-VYENV 100
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 27.9 bits (63), Expect = 6.1
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 256 RIKLVFQEFELEPHQT 271
++ +VFQ+F L PH T
Sbjct: 78 KVGMVFQQFNLFPHLT 93
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.139 0.455
Gapped
Lambda K H
0.267 0.0653 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,280,694
Number of extensions: 1485264
Number of successful extensions: 1013
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1005
Number of HSP's successfully gapped: 39
Length of query: 330
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 233
Effective length of database: 6,635,264
Effective search space: 1546016512
Effective search space used: 1546016512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.7 bits)