RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8443
(330 letters)
>3dem_A Complement factor MAsp-3; complement system, innate immunity,
calcium binding sites, C pathway, EGF-like domain,
glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}
Length = 278
Score = 261 bits (667), Expect = 1e-86
Identities = 88/284 (30%), Positives = 129/284 (45%), Gaps = 29/284 (10%)
Query: 63 LKHSNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLT 122
L + G + SP +PD Y + W I P +RI L F HF++E + CEYD +
Sbjct: 5 LNNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESS----YLCEYDYVK 60
Query: 123 VFSKIGDSFKSQGVFCGSKLPP--------VILSEGNALRIEFHSDNSVQKSGFSA---F 171
V + FCG + V+LS G+ + I F SD S ++ +
Sbjct: 61 VE----TEDQVLATFCGRETTDTEQTPGQEVVLSPGSFMSITFRSDFSNEERFTGFDAHY 116
Query: 172 FFTDKDECM---TNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGGCKYEITAPNG 228
D DEC C H C N IG Y CSC GY L + C+ T G
Sbjct: 117 MAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTCRVECSDNLFTQRTG 176
Query: 229 VIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQE-FELEPHQ--TCAYDHVVMYDGDSP 285
VI +P+ P+ YP EC++ G + L F++ F++E H C YD++ + G
Sbjct: 177 VITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDHPEVPCPYDYIKIKVGPK- 235
Query: 286 DSLTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATHT 329
LG FCG K P PI T S+ + ++F SD S + +G+ ++
Sbjct: 236 ---VLGPFCGEKAPEPISTQSHSVLILFHSDNSGENRGWRLSYR 276
Score = 145 bits (366), Expect = 1e-41
Identities = 53/162 (32%), Positives = 81/162 (50%), Gaps = 12/162 (7%)
Query: 12 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICVGSVKARDACGGILKHSNGTLT 71
E E+ C+H C N +GGY CSC+ GY LH+D + C + + G +T
Sbjct: 125 KEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTC-----RVECSDNLFTQRTGVIT 179
Query: 72 SPSFPDLYIKNKTCIWEIVAPPQYRISLNFTH-FDIEGNNLFQSSCEYDNLTVFSKIGDS 130
SP FP+ Y K+ C++ I + ++L F FDIE + + C YD + +
Sbjct: 180 SPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDHP--EVPCPYDYIKIK----VG 233
Query: 131 FKSQGVFCGSKLPPVILSEGNALRIEFHSDNSVQKSGFSAFF 172
K G FCG K P I ++ +++ I FHSDNS + G+ +
Sbjct: 234 PKVLGPFCGEKAPEPISTQSHSVLILFHSDNSGENRGWRLSY 275
Score = 115 bits (290), Expect = 2e-30
Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 221 YEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVVMY 280
E+ G I++P +PD YPS E W+ T G RIKL F F LE C YD+V +
Sbjct: 3 VELNNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESSYLCEYDYVKVE 62
Query: 281 DGDSPDSLTLGRFCGIKLPYP----IITGSNQLYMMFKSDASVQRKGF 324
D + GR P +++ + + + F+SD S + +
Sbjct: 63 TEDQVLATFCGRETTDTEQTPGQEVVLSPGSFMSITFRSDFSNEERFT 110
>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB
domain, EGF like domain., hydrolase, sugar binding
protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP:
b.23.1.1 b.23.1.1 g.3.11.1
Length = 286
Score = 248 bits (634), Expect = 1e-81
Identities = 87/278 (31%), Positives = 122/278 (43%), Gaps = 21/278 (7%)
Query: 66 SNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFS 125
G L SP FP+ Y ++ W + APP +R+ L FTHF++E + CEYD + + S
Sbjct: 7 VFGRLVSPGFPEKYGNHQDRSWTLTAPPGFRLRLYFTHFNLELS----YRCEYDFVKLTS 62
Query: 126 KIGDSFKSQGVFCGSKLPP----VILSEGNALRIEFHSDNSVQKSGFSAFFF---TDKDE 178
G S G +L++ FHSD S +K F D DE
Sbjct: 63 GTKVLATLCGQESTDTERAPGNDTFYSLGPSLKVTFHSDYSNEKPFTGFEAFYAAEDVDE 122
Query: 179 CMTNNG---GCQHECRNTIGSYICSCHNGYTLLENGHDCKEGGCKYEITAPNGVIKTPNH 235
C T+ G C H C +G Y CSC GY L +N H C T +G + +P +
Sbjct: 123 CRTSLGDSVPCDHYCHXYLGGYYCSCRVGYILHQNKHTCSALCSGQVFTGRSGFLSSPEY 182
Query: 236 PDYYPSKRECIWHFTTTPGHRIKLVFQE-FELEPHQ--TCAYDHVVMYDGDSPDSLTLGR 292
P YP C ++ G I L F E F++E H C YD + + G
Sbjct: 183 PQPYPKLSSCAYNIRLEEGFSITLDFVESFDVEMHPEAQCPYDSLKIQTDKR----EYGP 238
Query: 293 FCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATHTT 330
FCG LP I T SN++ + F +D S G+ +T+
Sbjct: 239 FCGKTLPPRIETDSNKVTITFTTDESGNHTGWKIHYTS 276
Score = 140 bits (354), Expect = 1e-39
Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 12/170 (7%)
Query: 11 FDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICVGSVKARDACGGILKHSNGTL 70
+ C+H C LGGY CSC++GY LH + C + G + +G L
Sbjct: 123 CRTSLGDSVPCDHYCHXYLGGYYCSCRVGYILHQNKHTC-----SALCSGQVFTGRSGFL 177
Query: 71 TSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTH-FDIEGNNLFQSSCEYDNLTVFSKIGD 129
+SP +P Y K +C + I + I+L+F FD+E + ++ C YD+L +
Sbjct: 178 SSPEYPQPYPKLSSCAYNIRLEEGFSITLDFVESFDVEMHP--EAQCPYDSLKIQ----T 231
Query: 130 SFKSQGVFCGSKLPPVILSEGNALRIEFHSDNSVQKSGFSAFFFTDKDEC 179
+ G FCG LPP I ++ N + I F +D S +G+ + +
Sbjct: 232 DKREYGPFCGKTLPPRIETDSNKVTITFTTDESGNHTGWKIHYTSTAQPH 281
Score = 108 bits (270), Expect = 1e-27
Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 4/104 (3%)
Query: 225 APNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVVMYDGDS 284
G + +P P+ Y + ++ W T PG R++L F F LE C YD V + G
Sbjct: 6 PVFGRLVSPGFPEKYGNHQDRSWTLTAPPGFRLRLYFTHFNLELSYRCEYDFVKLTSGTK 65
Query: 285 PDSLTLGRFCGIKLPYP----IITGSNQLYMMFKSDASVQRKGF 324
+ G+ P + L + F SD S ++
Sbjct: 66 VLATLCGQESTDTERAPGNDTFYSLGPSLKVTFHSDYSNEKPFT 109
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting,
mannan-binding protein, complement, ficolins complement
pathway, mannose- binding lectin; HET: NAG BMA MAN;
4.20A {Homo sapiens}
Length = 361
Score = 238 bits (609), Expect = 7e-77
Identities = 91/285 (31%), Positives = 133/285 (46%), Gaps = 29/285 (10%)
Query: 63 LKHSNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLT 122
L + G + SP +PD Y + W I P +RI L F HF++E + CEYD +
Sbjct: 5 LNNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESS----YLCEYDYVK 60
Query: 123 VFSKIGDSFKSQGVFCGSKLPP--------VILSEGNALRIEFHSDNSVQK--SGFSAFF 172
V + FCG + V+LS G+ + I F SD S ++ +GF A +
Sbjct: 61 VE----TEDQVLATFCGRETTDTEQTPGQEVVLSPGSFMSITFRSDFSNEERFTGFDAHY 116
Query: 173 FT-DKDECM---TNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGGCKYEITAPNG 228
D DEC C H C N IG Y CSC GY L + C+ T G
Sbjct: 117 MAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTCRVECSDNLFTQRTG 176
Query: 229 VIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQE-FELEPHQ--TCAYDHVVMYDGDSP 285
VI +P+ P+ YP EC++ G + L F++ F++E H C YD++ + G
Sbjct: 177 VITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDHPEVPCPYDYIKIKVGPK- 235
Query: 286 DSLTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATHTT 330
LG FCG K P PI T S+ + ++F SD S + +G+ ++
Sbjct: 236 ---VLGPFCGEKAPEPISTQSHSVLILFHSDNSGENRGWRLSYRA 277
Score = 174 bits (442), Expect = 7e-52
Identities = 64/246 (26%), Positives = 103/246 (41%), Gaps = 38/246 (15%)
Query: 12 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICVGSVKARDACGGILKHSNGTLT 71
E E+ C+H C N +GGY CSC+ GY LH+D + C + + G +T
Sbjct: 125 KEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTC-----RVECSDNLFTQRTGVIT 179
Query: 72 SPSFPDLYIKNKTCIWEIVAPPQYRISLNFTH-FDIEGNNLFQSSCEYDNLTVFSKIGDS 130
SP FP+ Y K+ C++ I + ++L F FDIE + + C YD + +
Sbjct: 180 SPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDHP--EVPCPYDYIKIK----VG 233
Query: 131 FKSQGVFCGSKLPPVILSEGNALRIEFHSDNSVQKSGFSAFFFTDKDECMTNNGGCQHEC 190
K G FCG K P I ++ +++ I FHSDNS + G+ + +EC +
Sbjct: 234 PKVLGPFCGEKAPEPISTQSHSVLILFHSDNSGENRGWRLSYRAAGNECPELQPPVHGKI 293
Query: 191 RNTIGSY------ICSCHNGYTLLENGHD--------------------CKEGGCKYEIT 224
+ Y + SC GY +L++ + CK+ E
Sbjct: 294 EPSQAKYFFKDQVLVSCDTGYKVLKDNVEMDTFQIECLKDGTWSNKIPTCKKNEIDLESE 353
Query: 225 APNGVI 230
+ +
Sbjct: 354 LKSEQV 359
Score = 110 bits (275), Expect = 1e-27
Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 221 YEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVVMY 280
E+ G I++P +PD YPS E W+ T G RIKL F F LE C YD+V +
Sbjct: 3 VELNNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESSYLCEYDYVKVE 62
Query: 281 DGDSPDSLTLGRFCGIKLPYP----IITGSNQLYMMFKSDASVQRKGF 324
D + GR P +++ + + + F+SD S + +
Sbjct: 63 TEDQVLATFCGRETTDTEQTPGQEVVLSPGSFMSITFRSDFSNEERFT 110
>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease
M disulfide bond, glycoprotein, secreted, transport,
choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo
sapiens}
Length = 457
Score = 233 bits (596), Expect = 1e-73
Identities = 77/279 (27%), Positives = 120/279 (43%), Gaps = 43/279 (15%)
Query: 52 SVKARDACGGILKHSNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNL 111
++ A AC GT TSP+FP+ Y N CI+ I I+++FT+F +E
Sbjct: 110 AISAATACLQDYTDDLGTFTSPNFPNNYPNNWECIYRITVRTGQLIAVHFTNFSLEEAI- 168
Query: 112 FQSSCEYDNLTVFSKIGDSFKSQGVFCGSKLPPVILSEGNALRIEFHSDNSVQKSGFSAF 171
+ D L + + G+F GS LPP I+S N L ++F SD +SGFSA+
Sbjct: 169 --GNYYTDFLEIRDGGYEKSPLLGIFYGSNLPPTIISHSNKLWLKFKSDQIDTRSGFSAY 226
Query: 172 FFTDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGGCKYEITAPNGVIK 231
D GC +T +G
Sbjct: 227 ----------------------------------------WDGSSTGCGGNLTTSSGTFI 246
Query: 232 TPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVVMYDGDSPDSLTLG 291
+PN+P Y EC W ++ G +L F++F LE H C D++ +YDG S +S L
Sbjct: 247 SPNYPMPYYHSSECYWWLKSSHGSAFELEFKDFHLEHHPNCTLDYLAVYDGPSSNSHLLT 306
Query: 292 RFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATHTT 330
+ CG + P I + + +++ ++D Q +GF A +
Sbjct: 307 QLCGDEKPPLIRSSGDSMFIKLRTDEGQQGRGFKAEYRQ 345
Score = 218 bits (557), Expect = 7e-68
Identities = 65/270 (24%), Positives = 110/270 (40%), Gaps = 50/270 (18%)
Query: 59 CGGILKHSNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEY 118
CGG L S+GT SP++P Y + C W + + L F F +E + +C
Sbjct: 234 CGGNLTTSSGTFISPNYPMPYYHSSECYWWLKSSHGSAFELEFKDFHLEHH----PNCTL 289
Query: 119 DNLTVFSKIGDSFKSQGVFCGSKLPPVILSEGNALRIEFHSDNSVQKSGFSAFFFTDKDE 178
D L V+ + CG + PP+I S G+++ I+ +D Q GF A + +
Sbjct: 290 DYLAVYDGPSSNSHLLTQLCGDEKPPLIRSSGDSMFIKLRTDEGQQGRGFKAEYRQTCEN 349
Query: 179 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGGCKYEITAPNGVIKTPNHPDY 238
+ + G++++ +P+
Sbjct: 350 VV-----------------------------------------IVNQTYGILESIGYPNP 368
Query: 239 YPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVVMYDGDSPDSLTLGRFCGIKL 298
Y + C W T G+ + F F+LE H C+ D++ +YDG +GR+CG+ L
Sbjct: 369 YSENQHCNWTIRATTGNTVNYTFLAFDLEHHINCSTDYLELYDGPR----QMGRYCGVDL 424
Query: 299 PYPIITGSNQLYMMFKSDA-SVQRKGFIAT 327
P P T S++L ++ +D + KGF
Sbjct: 425 PPPGSTTSSKLQVLLLTDGVGRREKGFQMQ 454
Score = 218 bits (556), Expect = 1e-67
Identities = 81/273 (29%), Positives = 111/273 (40%), Gaps = 45/273 (16%)
Query: 59 CGGILKHSNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEY 118
CG IL S GT+ SP P++Y C W I+ P + I L F F +E + +C
Sbjct: 1 CGEILTESTGTIQSPGHPNVYPHGINCTWHILVQPNHLIHLMFETFHLEFH----YNCTN 56
Query: 119 DNLTVFSKIGDSFKSQGVFCGSKLPPVILSEGNALRIEFHSDNSVQKSGFSAFFFTDKDE 178
D L V+ DS S G +CG +PP + S GN+L + F +D+ + GF +
Sbjct: 57 DYLEVYD--TDSETSLGRYCGKSIPPSLTSSGNSLMLVFVTDSDLAYEGFLINYEAISAA 114
Query: 179 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGGCKYEITAPNGVIKTPNHPDY 238
C + T G +PN P+
Sbjct: 115 TA--------------------------------------CLQDYTDDLGTFTSPNFPNN 136
Query: 239 YPSKRECIWHFTTTPGHRIKLVFQEFELEPH-QTCAYDHVVMYDGDSPDSLTLGRFCGIK 297
YP+ ECI+ T G I + F F LE D + + DG S LG F G
Sbjct: 137 YPNNWECIYRITVRTGQLIAVHFTNFSLEEAIGNYYTDFLEIRDGGYEKSPLLGIFYGSN 196
Query: 298 LPYPIITGSNQLYMMFKSDASVQRKGFIATHTT 330
LP II+ SN+L++ FKSD R GF A
Sbjct: 197 LPPTIISHSNKLWLKFKSDQIDTRSGFSAYWDG 229
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived
antibody, developmental protein, differentiation,
glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A
Length = 579
Score = 222 bits (568), Expect = 3e-68
Identities = 76/279 (27%), Positives = 114/279 (40%), Gaps = 49/279 (17%)
Query: 58 ACGGILK-HSNGTLTSPSFPDLYIKNKTCIWEIVAP-PQYRISLNFTHFDIEGNNLFQSS 115
CGG L G +TSP +P Y ++ C W + AP P +I LNF
Sbjct: 5 PCGGRLNSKDAGYITSPGYPQDYPSHQNCEWIVYAPEPNQKIVLNFNPHFEIEK----HD 60
Query: 116 CEYDNLTVFSKIGDSFKSQGVFCGSKLPPVILSEGNALRIEFHSDNSVQKSGFSAFFFTD 175
C+YD + + +S G CG+ PP I+S G+ L I+F SD + Q +GFS +
Sbjct: 61 CKYDFIEIRDGDSESADLLGKHCGNIAPPTIISSGSMLYIKFTSDYARQGAGFSLRYEIF 120
Query: 176 KDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGGCKYEITAPNGVIKTPNH 235
K C T+PNG I++P
Sbjct: 121 KTG-------------------------------------SEDCSKNFTSPNGTIESPGF 143
Query: 236 PDYYPSKRECIWHFTTTPGHRIKLVFQEFELEP------HQTCAYDHVVMYDGDSPDSLT 289
P+ YP +C + P I L F F+LE C YD + ++DG
Sbjct: 144 PEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPLQVGEGDCKYDWLDIWDGIPHVGPL 203
Query: 290 LGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATH 328
+G++CG K P + + + L + F +D +V + GF A +
Sbjct: 204 IGKYCGTKTPSELRSSTGILSLTFHTDMAVAKDGFSARY 242
Score = 143 bits (363), Expect = 7e-39
Identities = 45/168 (26%), Positives = 70/168 (41%), Gaps = 3/168 (1%)
Query: 54 KARDACGGILKHSNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQ 113
+ C NGT+ SP FP+ Y N C + I+A P+ I L F FD+E + L
Sbjct: 122 TGSEDCSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPLQV 181
Query: 114 SS--CEYDNLTVFSKIGDSFKSQGVFCGSKLPPVILSEGNALRIEFHSDNSVQKSGFSAF 171
C+YD L ++ I G +CG+K P + S L + FH+D +V K GFSA
Sbjct: 182 GEGDCKYDWLDIWDGIPHVGPLIGKYCGTKTPSELRSSTGILSLTFHTDMAVAKDGFSAR 241
Query: 172 FFTDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGGC 219
++ E + N + + + +G +
Sbjct: 242 YYLVHQEPLENFQCNVPLGMESG-RIANEQISASSTYSDGRWTPQQSR 288
Score = 131 bits (330), Expect = 3e-34
Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Query: 216 EGGCKYEITAPN-GVIKTPNHPDYYPSKRECIWHFT-TTPGHRIKLVFQEFELEPHQTCA 273
+ C + + + G I +P +P YPS + C W P +I L F C
Sbjct: 3 DPPCGGRLNSKDAGYITSPGYPQDYPSHQNCEWIVYAPEPNQKIVLNFNPHFEIEKHDCK 62
Query: 274 YDHVVMYDGDSPDSLTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATHTT 330
YD + + DGDS + LG+ CG P II+ + LY+ F SD + Q GF +
Sbjct: 63 YDFIEIRDGDSESADLLGKHCGNIAPPTIISSGSMLYIKFTSDYARQGAGFSLRYEI 119
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 154 bits (390), Expect = 2e-46
Identities = 56/170 (32%), Positives = 69/170 (40%), Gaps = 15/170 (8%)
Query: 58 ACGGILKH-SNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSC 116
G G L SP FP Y ++ W + APP YR+ L FTHFD+E + C
Sbjct: 2 PLGPKWPEPVFGRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLELS----HLC 57
Query: 117 EYDNLTVFSKIGDSFKSQGVFCGSKLPP----VILSEGNALRIEFHSDNSVQKSGFSAFF 172
EYD + + S G S G++L I F SD S +K
Sbjct: 58 EYDFVKLSSGAKVLATLCGQESTDTERAPGKDTFYSLGSSLDITFRSDYSNEKPFTGFEA 117
Query: 173 F---TDKDECMTNNG---GCQHECRNTIGSYICSCHNGYTLLENGHDCKE 216
F D DEC G C H C N +G + CSC GY L N C E
Sbjct: 118 FYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 167
Score = 113 bits (284), Expect = 9e-31
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 5/112 (4%)
Query: 218 GCKYEITAP-NGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDH 276
+ P G + +P P Y + +E W T PG+R++L F F+LE C YD
Sbjct: 2 PLGPKWPEPVFGRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLELSHLCEYDF 61
Query: 277 VVMYDGDSPDSLTLGRFCGIKLPYP----IITGSNQLYMMFKSDASVQRKGF 324
V + G + G+ P + + L + F+SD S ++
Sbjct: 62 VKLSSGAKVLATLCGQESTDTERAPGKDTFYSLGSSLDITFRSDYSNEKPFT 113
Score = 40.3 bits (94), Expect = 3e-04
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 12 DECAL---EDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 49
DEC + E C+H C N LGG+ CSC+ GY LH + + C
Sbjct: 125 DECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTC 165
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 148 bits (374), Expect = 3e-44
Identities = 45/158 (28%), Positives = 67/158 (42%), Gaps = 12/158 (7%)
Query: 66 SNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFS 125
G + SP++P Y W+I P Y I L FTH DIE + +C YD++ + S
Sbjct: 4 MYGEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIELS----ENCAYDSVQIIS 59
Query: 126 KIGDSFKSQGVFCGSKLPP----VILSEGNALRIEFHSDNSVQKSGFSA---FFFTDKDE 178
+ + G + N L++ F SD S ++ + TD +E
Sbjct: 60 GDTEEGRLCGQRSSNNPHSPIVEEFQVPYNKLQVIFKSDFSNEERFTGFAAYYVATDINE 119
Query: 179 CM-TNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCK 215
C + C H C N IG Y CSC Y L ++ +C
Sbjct: 120 CTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCG 157
Score = 120 bits (303), Expect = 1e-33
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Query: 226 PNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVVMYDGDSP 285
G I +PN+P YPS+ E W G+ I L F ++E + CAYD V + GD+
Sbjct: 4 MYGEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIELSENCAYDSVQIISGDTE 63
Query: 286 DSLTLGRFCGIKLPYP----IITGSNQLYMMFKSDASVQRKGFIATHTT 330
+ G+ P N+L ++FKSD S + +
Sbjct: 64 EGRLCGQRSSNNPHSPIVEEFQVPYNKLQVIFKSDFSNEERFTGFAAYY 112
Score = 48.7 bits (116), Expect = 3e-07
Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 12 DECA-LEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 49
+EC D C H C N +GGY CSC Y LH D K C
Sbjct: 118 NECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNC 156
>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein, cell
adhesion, extracellular matrix; 2.30A {Homo sapiens}
Length = 149
Score = 145 bits (367), Expect = 3e-43
Identities = 40/113 (35%), Positives = 55/113 (48%)
Query: 218 GCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHV 277
C T P + K+P P+ Y + C WH G RI L F +F+LE C D+V
Sbjct: 6 ECGGVFTDPKQIFKSPGFPNEYEDNQICYWHIRLKYGQRIHLSFLDFDLEDDPGCLADYV 65
Query: 278 VMYDGDSPDSLTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATHTT 330
+YD +GR+CG +LP II+ N + + F SDASV GF +
Sbjct: 66 EIYDSYDDVHGFVGRYCGDELPDDIISTGNVMTLKFLSDASVTAGGFQIKYVA 118
Score = 140 bits (356), Expect = 1e-41
Identities = 41/142 (28%), Positives = 61/142 (42%), Gaps = 5/142 (3%)
Query: 59 CGGILKHSNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEY 118
CGG+ SP FP+ Y N+ C W I RI L+F FD+E + C
Sbjct: 7 CGGVFTDPKQIFKSPGFPNEYEDNQICYWHIRLKYGQRIHLSFLDFDLEDD----PGCLA 62
Query: 119 DNLTVFSKIGDSFKSQGVFCGSKLPPVILSEGNALRIEFHSDNSVQKSGFSAFFFTDKDE 178
D + ++ D G +CG +LP I+S GN + ++F SD SV GF + D
Sbjct: 63 DYVEIYDSYDDVHGFVGRYCGDELPDDIISTGNVMTLKFLSDASVTAGGFQI-KYVAMDP 121
Query: 179 CMTNNGGCQHECRNTIGSYICS 200
++ G +T +
Sbjct: 122 VSKSSQGKNTSTTSTGNKNFLA 143
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding
domain, angiogenesis, developmental protein,
differentiation; HET: NAG FUC; 2.00A {Homo sapiens}
SCOP: b.18.1.2 b.18.1.2 b.23.1.1
Length = 450
Score = 152 bits (384), Expect = 1e-42
Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 212 HDCKEG-GCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQ 270
H K G C T P+GVIK+P P+ YP+ EC + I L F+ F+LEP
Sbjct: 3 HMFKRGPECSQNYTTPSGVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLEPDS 62
Query: 271 T------CAYDHVVMYDGDSPDSLTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGF 324
C YD + ++DG +GR+CG K P I + S L M+F +D+++ ++GF
Sbjct: 63 NPPGGMFCRYDRLEIWDGFPDVGPHIGRYCGQKTPGRIRSSSGILSMVFYTDSAIAKEGF 122
Query: 325 IATH 328
A +
Sbjct: 123 SANY 126
Score = 137 bits (346), Expect = 3e-37
Identities = 40/189 (21%), Positives = 65/189 (34%), Gaps = 8/189 (4%)
Query: 54 KARDACGGILKHSNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQ 113
K C +G + SP FP+ Y + C + + AP I L F FD+E ++
Sbjct: 6 KRGPECSQNYTTPSGVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLEPDSNPP 65
Query: 114 SS--CEYDNLTVFSKIGDSFKSQGVFCGSKLPPVILSEGNALRIEFHSDNSVQKSGFSAF 171
C YD L ++ D G +CG K P I S L + F++D+++ K GFSA
Sbjct: 66 GGMFCRYDRLEIWDGFPDVGPHIGRYCGQKTPGRIRSSSGILSMVFYTDSAIAKEGFSAN 125
Query: 172 FFTDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGGCKYEITAPNGVIK 231
+ + + + + + +
Sbjct: 126 YSVLQSSVSEDFKCMEALGMESGEIHSDQITASS------QYSTNWSAERSRLNYPENGW 179
Query: 232 TPNHPDYYP 240
TP Y
Sbjct: 180 TPGEDSYRE 188
>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding
domain, developmental protein, differentiation,
glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}
Length = 460
Score = 143 bits (362), Expect = 2e-39
Identities = 47/188 (25%), Positives = 76/188 (40%), Gaps = 7/188 (3%)
Query: 55 ARDACGGILKHSNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGN--NLF 112
+ C NGT+ SP FP+ Y N C + I+A P+ I L F FD+E + +
Sbjct: 4 GSEDCSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPLQVG 63
Query: 113 QSSCEYDNLTVFSKIGDSFKSQGVFCGSKLPPVILSEGNALRIEFHSDNSVQKSGFSAFF 172
+ C+YD L ++ I G +CG+K P + S L + FH+D +V K GFSA +
Sbjct: 64 EGDCKYDWLDIWDGIPHVGPLIGKYCGTKTPSELRSSTGILSLTFHTDMAVAKDGFSARY 123
Query: 173 FTDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGGCKYEITAPNGVIKT 232
+ E + N + + + D + + + + T
Sbjct: 124 YLVHQEPLENFQCNVPLGMES----GRIANEQISASSTYSDGRWTPQQSRLHGDDNGW-T 178
Query: 233 PNHPDYYP 240
PN
Sbjct: 179 PNLDSNKE 186
Score = 140 bits (355), Expect = 2e-38
Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 6/124 (4%)
Query: 213 DCKEGGCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEP---- 268
D C T+PNG I++P P+ YP +C + P I L F F+LE
Sbjct: 2 DPGSEDCSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPLQ 61
Query: 269 --HQTCAYDHVVMYDGDSPDSLTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIA 326
C YD + ++DG +G++CG K P + + + L + F +D +V + GF A
Sbjct: 62 VGEGDCKYDWLDIWDGIPHVGPLIGKYCGTKTPSELRSSTGILSLTFHTDMAVAKDGFSA 121
Query: 327 THTT 330
+
Sbjct: 122 RYYL 125
>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding
site, complex with ethylamine, COMP protein, lectin
pathway of complement; 1.45A {Rattus norvegicus} PDB:
3pob_A 3pof_A 3pog_A 3poi_A 3poe_A
Length = 115
Score = 125 bits (316), Expect = 5e-36
Identities = 34/110 (30%), Positives = 57/110 (51%), Gaps = 7/110 (6%)
Query: 223 ITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQE-FELEPHQ--TCAYDHVVM 279
T G I +P++P+ YP EC + G + L F++ F++E H C YD++ +
Sbjct: 9 FTQRTGTITSPDYPNPYPKSSECSYTIDLEEGFMVTLQFEDIFDIEDHPEVPCPYDYIKI 68
Query: 280 YDGDSPDSLTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATHT 329
G G FCG K P PI T S+ + ++F+SD S + +G+ ++
Sbjct: 69 KAGSK----VWGPFCGEKSPEPISTQSHSIQILFRSDNSGENRGWRLSYR 114
Score = 122 bits (309), Expect = 5e-35
Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Query: 59 CGG-ILKHSNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTH-FDIEGNNLFQSSC 116
C G + GT+TSP +P+ Y K+ C + I + ++L F FDIE + + C
Sbjct: 4 CSGNLFTQRTGTITSPDYPNPYPKSSECSYTIDLEEGFMVTLQFEDIFDIEDH--PEVPC 61
Query: 117 EYDNLTVFSKIGDSFKSQGVFCGSKLPPVILSEGNALRIEFHSDNSVQKSGFSAFF 172
YD + + K G FCG K P I ++ ++++I F SDNS + G+ +
Sbjct: 62 PYDYIKIK----AGSKVWGPFCGEKSPEPISTQSHSIQILFRSDNSGENRGWRLSY 113
>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins,
spermadhesins, CUB domain architecture, complex (seminal
plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Length = 109
Score = 115 bits (289), Expect = 3e-32
Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 16/118 (13%)
Query: 58 ACGGILKHSNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCE 117
ACGG L GT+ + P C+W + P+Y++ ++ ++ C
Sbjct: 5 ACGGRLTDDYGTIFTYKGP-----KTECVWTLQVDPKYKLLVSIPTLNLT--------CG 51
Query: 118 YDNLTVFSKIGDSFKSQGVFCGSKLPPVILSEGNALRIEFHSDNSVQKSGFSAFFFTD 175
+ + V S KS G FC ++ + + +++ D+ S + F D
Sbjct: 52 KEYVEVLEGAPGS-KSLGKFCEG--LSILNRGSSGMTVKYKRDSGHPASPYEIIFLRD 106
Score = 108 bits (272), Expect = 9e-30
Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 12/110 (10%)
Query: 218 GCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHV 277
C +T G I T P EC+W P +++ + L C ++V
Sbjct: 5 ACGGRLTDDYGTIFTYKGPK-----TECVWTLQVDPKYKLLVSIPTLNLT----CGKEYV 55
Query: 278 VMYDGDSPDSLTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIAT 327
+ +G +P S +LG+FC + GS+ + + +K D+ +
Sbjct: 56 EVLEG-APGSKSLGKFCE--GLSILNRGSSGMTVKYKRDSGHPASPYEII 102
>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma proteins,
spermadhesins, CUB domain architecture, complex (seminal
plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Length = 116
Score = 115 bits (289), Expect = 5e-32
Identities = 23/123 (18%), Positives = 49/123 (39%), Gaps = 15/123 (12%)
Query: 53 VKARDACGGILKHSNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLF 112
+ D CG ++K ++G++++ C W I+ P ++ + + ++
Sbjct: 3 INGPDECGRVIKDTSGSISNTDRQKNL-----CTWTILMKPDQKVRMAIPYLNLA----- 52
Query: 113 QSSCEYDNLTVFSKIGDSFKSQGVFCGSKLPPVILSEGNALRIEFHSDNSVQKSGFSAFF 172
C + + VF + S G C V LS N + I+++ + S F +F
Sbjct: 53 ---CGKEYVEVFDGLLSG-PSYGKLCAG-AAIVFLSTANTMTIKYNRISGNSSSPFLIYF 107
Query: 173 FTD 175
+
Sbjct: 108 YGS 110
Score = 108 bits (272), Expect = 1e-29
Identities = 16/113 (14%), Positives = 36/113 (31%), Gaps = 11/113 (9%)
Query: 218 GCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHV 277
C I +G I + C W P ++++ L C ++V
Sbjct: 8 ECGRVIKDTSGSISNTDRQKNL-----CTWTILMKPDQKVRMAIPYLNLA----CGKEYV 58
Query: 278 VMYDGDSPDSLTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATHTT 330
++DG + G+ C ++ +N + + + + F+
Sbjct: 59 EVFDG-LLSGPSYGKLCA-GAAIVFLSTANTMTIKYNRISGNSSSPFLIYFYG 109
>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal
fluid protein, CUB domain, X-RAY growth factor; 1.90A
{Bos taurus} SCOP: b.23.1.1
Length = 114
Score = 114 bits (287), Expect = 7e-32
Identities = 21/116 (18%), Positives = 42/116 (36%), Gaps = 11/116 (9%)
Query: 215 KEGGCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAY 274
+ C + +GVI T Y K C+W P + +++ Q +L C
Sbjct: 6 RNTNCGGILKEESGVIATY-----YGPKTNCVWTIQMPPEYHVRVSIQYLQLN----CNK 56
Query: 275 DHVVMYDGDSPDSLTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATHTT 330
+ + + DG P S LG+ C L + + + + + + + +
Sbjct: 57 ESLEIIDG-LPGSPVLGKICEGSLM-DYRSSGSIMTVKYIREPEHPASFYEVLYFQ 110
Score = 111 bits (280), Expect = 7e-31
Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 15/117 (12%)
Query: 59 CGGILKHSNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEY 118
CGGILK +G + + Y C+W I PP+Y + ++ + + C
Sbjct: 10 CGGILKEESGVIATY-----YGPKTNCVWTIQMPPEYHVRVSIQYLQLN--------CNK 56
Query: 119 DNLTVFSKIGDSFKSQGVFCGSKLPPVILSEGNALRIEFHSDNSVQKSGFSAFFFTD 175
++L + + S G C L S G+ + +++ + S + +F D
Sbjct: 57 ESLEIIDGLPGS-PVLGKICEGSLMD-YRSSGSIMTVKYIREPEHPASFYEVLYFQD 111
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR
{Homo sapiens} SCOP: g.3.11.1
Length = 53
Score = 67.1 bits (164), Expect = 7e-15
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Query: 175 DKDECMTNNGG--------CQHECRNTIGSYICSCHNGYTLLENGHDCK 215
D DEC + + CQH C N +G Y CSC GY L E+ H C+
Sbjct: 3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQ 51
Score = 55.9 bits (135), Expect = 6e-11
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 8/46 (17%)
Query: 12 DECALEDHG--------CEHTCKNILGGYECSCKIGYELHSDGKIC 49
DECA C+H C N +GGY CSC+ GYEL D C
Sbjct: 5 DECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSC 50
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease,
hydrolase, polymorphism, glycoprotein,
gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo
sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L*
2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L*
2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L*
2y5h_L* ...
Length = 55
Score = 67.0 bits (164), Expect = 8e-15
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 176 KDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKE 216
+ C +NG C C S +CSC GYTL +NG C
Sbjct: 1 RKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIP 41
Score = 57.0 bits (138), Expect = 3e-11
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 12 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICVGSVKARDACGGI 62
C+L++ C+ C CSC GY L +GK C+ + CG
Sbjct: 2 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPY--PCGKQ 50
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood
coagulation, complex (protease/inhibitor); 3.00A {Bos
taurus} SCOP: g.3.11.1
Length = 51
Score = 63.5 bits (155), Expect = 1e-13
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 179 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 214
C +NGGC CR CSC +GY L ++ C
Sbjct: 1 CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSC 36
Score = 58.1 bits (141), Expect = 1e-11
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 14 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICVGSVKARDACGGILK 64
C+L++ GC+ C+ CSC GY L D K CV + + CG +
Sbjct: 1 CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERF--PCGKFTQ 49
>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease
activation, R drug design, substrate-assisted catalysis,
hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB:
1klj_L 1jbu_L 1ygc_L*
Length = 69
Score = 62.9 bits (153), Expect = 3e-13
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 175 DKDECMTNNGGCQHECRNTIGS-YICSCHNGYTLLENGHDCKE 216
D+ C+ NGGC+ C + G+ C CH GY+LL +G C
Sbjct: 4 DQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTP 46
Score = 55.6 bits (134), Expect = 2e-10
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 11 FDECALEDHGCEHTCKNILGG-YECSCKIGYELHSDGKICVGSVKARDACGGI 62
C E+ GCE C + G C C GY L +DG C +V+ CG I
Sbjct: 5 QLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVE--YPCGKI 55
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 63.1 bits (154), Expect = 7e-13
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 165 KSGFSAFFFTDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGH 212
+EC+ NNGGC + C + Y C C +G+ L+
Sbjct: 18 TENLYFQGAMGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRR 65
Score = 60.0 bits (146), Expect = 9e-12
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 174 TDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCK 215
D DEC + C C N G Y C C G+ L + CK
Sbjct: 67 EDIDEC-QDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACK 107
Score = 54.6 bits (132), Expect = 8e-10
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 12 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGK 47
+EC + GC + C ++ GYEC C G++L + +
Sbjct: 30 NECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRR 65
Score = 53.9 bits (130), Expect = 1e-09
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 12 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 49
DEC + C C N+ GGY+C C+ G++L K C
Sbjct: 70 DECQ-DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 106
Score = 33.5 bits (77), Expect = 0.022
Identities = 2/20 (10%), Positives = 4/20 (20%)
Query: 188 HECRNTIGSYICSCHNGYTL 207
H + + Y
Sbjct: 4 HHHHHPMSDYDIPTTENLYF 23
Score = 32.3 bits (74), Expect = 0.053
Identities = 2/27 (7%), Positives = 5/27 (18%)
Query: 23 HTCKNILGGYECSCKIGYELHSDGKIC 49
H + + Y+
Sbjct: 4 HHHHHPMSDYDIPTTENLYFQGAMGTN 30
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 61.9 bits (151), Expect = 1e-12
Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 175 DKDECMTNNGGC-QHECRNTIGSYICSCHNGYTLLENGHDC 214
D DEC C C+N G + C C GY C
Sbjct: 2 DVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSC 42
Score = 58.1 bits (141), Expect = 3e-11
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 12 DECALEDHGC-EHTCKNILGGYECSCKIGYELHSDGKICV 50
DEC+L+ C CKNI G +EC C GY + K C
Sbjct: 4 DECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCE 43
Score = 54.6 bits (132), Expect = 5e-10
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 174 TDKDECMTNNGGCQHECRNTIGSYICSC--HNGYTLLENGHDCK 215
D DEC N C C N G Y C C G+ L ++ C+
Sbjct: 43 EDIDECSENM--CAQLCVNYPGGYTCYCDGKKGFKLAQDQKSCE 84
Score = 51.5 bits (124), Expect = 6e-09
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 12 DECALEDHGCEHTCKNILGGYECSCKI--GYELHSDGKICV 50
DEC+ ++ C C N GGY C C G++L D K C
Sbjct: 46 DECS--ENMCAQLCVNYPGGYTCYCDGKKGFKLAQDQKSCE 84
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 63.1 bits (154), Expect = 2e-12
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 174 TDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 214
TD +EC+ C NT GSYIC C + L C
Sbjct: 1 TDVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGC 41
Score = 59.3 bits (144), Expect = 5e-11
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 174 TDKDECMTNNGGCQ-HECRNTIGSYICSCHNGYTLLENGHDC 214
D DEC G CQ +C NT GS+ C C GY L E+ C
Sbjct: 120 EDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
Score = 55.8 bits (135), Expect = 8e-10
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 12 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICV 50
+EC C N G Y C C +EL+ CV
Sbjct: 4 NECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCV 42
Score = 53.1 bits (128), Expect = 8e-09
Identities = 2/41 (4%), Positives = 7/41 (17%)
Query: 175 DKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCK 215
+ + +C G+ +
Sbjct: 80 SLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILE 120
Score = 52.0 bits (125), Expect = 2e-08
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 12 DECALEDHGCE-HTCKNILGGYECSCKIGYELHSDGKIC 49
DEC C+ C N G ++C C GY L+ D ++C
Sbjct: 123 DECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
Score = 48.9 bits (117), Expect = 2e-07
Identities = 9/46 (19%), Positives = 11/46 (23%), Gaps = 3/46 (6%)
Query: 174 TDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGGC 219
D N R G CS G + + C G
Sbjct: 42 VDTRSG---NCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKA 84
Score = 48.1 bits (115), Expect = 5e-07
Identities = 3/39 (7%), Positives = 6/39 (15%)
Query: 12 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICV 50
+ C G+ + I
Sbjct: 82 GKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILE 120
Score = 43.5 bits (103), Expect = 2e-05
Identities = 6/38 (15%), Positives = 10/38 (26%), Gaps = 3/38 (7%)
Query: 12 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 49
+ + G CS +IG + C
Sbjct: 45 RSGN---CYLDIRPRGDNGDTACSNEIGVGVSKASCCC 79
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 61.7 bits (150), Expect = 3e-12
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 174 TDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKE 216
C +NGGC H C +G CSC GY L ++ C
Sbjct: 52 VSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHP 94
Score = 50.9 bits (122), Expect = 2e-08
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 11 FDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICVGSVKARDACGGILKHSN 67
F C+L++ GC H C +G CSC GY+L D C +VK CG K
Sbjct: 54 FLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVK--FPCGRPWKRME 108
Score = 35.5 bits (82), Expect = 0.005
Identities = 8/45 (17%), Positives = 15/45 (33%)
Query: 175 DKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGGC 219
+ + C + IGS+ C C +G+ + C
Sbjct: 13 PLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNC 57
Score = 30.8 bits (70), Expect = 0.18
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 8/40 (20%)
Query: 12 DECALEDHGCE--------HTCKNILGGYECSCKIGYELH 43
D+C + TC + +G + C C+ G+E
Sbjct: 7 DQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGR 46
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 65.2 bits (158), Expect = 5e-12
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 174 TDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKE 216
T ++ C NNGGC +C+ G+ C+CH GY L E+G C++
Sbjct: 1 TGEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQD 43
Score = 54.4 bits (130), Expect = 2e-08
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 12 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 49
+ C + + GC C+ I G +C+C GY L DG+ C
Sbjct: 4 ENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTC 41
Score = 45.5 bits (107), Expect = 1e-05
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 171 FFFTDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKE 216
K+ C NNGGC H C + +Y C+C G+ N H C +
Sbjct: 342 RQPAGKNRCGDNNGGCTHLCLPSGQNYTCACPTGFR-KINSHACAQ 386
Score = 39.8 bits (92), Expect = 8e-04
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 10 KFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICV 50
+ C + GC H C Y C+C G+ + C
Sbjct: 346 GKNRCGDNNGGCTHLCLPSGQNYTCACPTGFRK-INSHACA 385
Score = 38.6 bits (89), Expect = 0.002
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 12 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 49
+ECA E+ C C N G ++C C+ GYEL D + C
Sbjct: 45 NECA-EEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSC 81
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 60.0 bits (146), Expect = 5e-12
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 174 TDKDECMTNNGGCQ-HECRNTIGSYICSCHNGYTLLENGHDC 214
D DEC + C+ C NT GSY C C G+ L N C
Sbjct: 44 MDIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISAC 85
Score = 56.9 bits (138), Expect = 7e-11
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 174 TDKDECMTNNGGC-QHECRNTIGSYICSCHNGYTL-LENGHDC 214
TD DEC + C + +C NT G + C C GY +C
Sbjct: 1 TDIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNC 43
Score = 56.1 bits (136), Expect = 1e-10
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 12 DECALEDHGCE-HTCKNILGGYECSCKIGYELHSDGKICV 50
DEC + C C N G Y C C G++L + C+
Sbjct: 47 DECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISACI 86
Score = 48.4 bits (116), Expect = 8e-08
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 12 DECALEDHGCEH-TCKNILGGYECSCKIGYEL-HSDGKICV 50
DEC + C C N G +EC C GYE K C+
Sbjct: 4 DECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCM 44
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 58.0 bits (141), Expect = 2e-11
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 174 TDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGH 212
D DEC N C+N IG + C+C G+
Sbjct: 42 VDTDECSVGNPCGNGTCKNVIGGFECTCEEGFEPGPMMT 80
Score = 57.2 bits (139), Expect = 4e-11
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 174 TDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 214
D DEC + +C NT GSY C C GY L G++C
Sbjct: 3 VDMDECKEPDVCKHGQCINTDGSYRCECPFGYIL--AGNEC 41
Score = 50.3 bits (121), Expect = 1e-08
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 12 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 49
DEC++ + TCKN++GG+EC+C+ G+E C
Sbjct: 45 DECSVGNPCGNGTCKNVIGGFECTCEEGFEP-GPMMTC 81
Score = 48.3 bits (116), Expect = 6e-08
Identities = 16/39 (41%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 12 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICV 50
DEC D C N G Y C C GY L G CV
Sbjct: 6 DECKEPDVCKHGQCINTDGSYRCECPFGYIL--AGNECV 42
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 59.7 bits (145), Expect = 3e-11
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 174 TDKDECMTNNGGCQH-ECRNTIGSYICSCHNGYTLLENGHDC 214
D DEC G C++ C NT GS+ C C +G TL G C
Sbjct: 105 EDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRIC 146
Score = 54.7 bits (132), Expect = 2e-09
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 175 DKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 214
D DEC ++ C+N+ GS+IC C + TL C
Sbjct: 3 DIDEC-ESSPCINGVCKNSPGSFICECSSESTLDPTKTIC 41
Score = 52.7 bits (127), Expect = 7e-09
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 12 DECALEDHGCEH-TCKNILGGYECSCKIGYELHSDGKICV 50
DEC + C++ C N G ++C C G L + G+IC+
Sbjct: 108 DECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRICL 147
Score = 48.9 bits (117), Expect = 2e-07
Identities = 12/39 (30%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 12 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICV 50
DEC CKN G + C C L IC+
Sbjct: 5 DECE-SSPCINGVCKNSPGSFICECSSESTLDPTKTICI 42
Score = 41.2 bits (97), Expect = 9e-05
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 172 FFTDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 214
T K +C ++ G T+ C GY+ G C
Sbjct: 64 GATLKSQC-CSSLGAAWGSPCTLCQVDPICGKGYS-RIKGTQC 104
Score = 32.7 bits (75), Expect = 0.072
Identities = 7/34 (20%), Positives = 8/34 (23%), Gaps = 1/34 (2%)
Query: 17 EDHGCEHTCKNILGGYECSCKIGYELHSDGKICV 50
G L + C GY G C
Sbjct: 73 SSLGAAWGSPCTLCQVDPICGKGYSR-IKGTQCE 105
Score = 26.9 bits (60), Expect = 6.6
Identities = 5/34 (14%), Positives = 10/34 (29%)
Query: 186 CQHECRNTIGSYICSCHNGYTLLENGHDCKEGGC 219
+ C T+ C + L++ G
Sbjct: 45 IKGTCWQTVIDGRCEININGATLKSQCCSSLGAA 78
>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1
PDB: 1w8b_L* 1w7x_L* 1cvw_L*
Length = 53
Score = 57.0 bits (138), Expect = 3e-11
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 179 CMTNNGGCQHECRNTIGS-YICSCHNGYTLLENGHDCKE 216
C+ NGGC+ C + G+ C CH GY+LL +G C
Sbjct: 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTP 40
Score = 51.2 bits (123), Expect = 3e-09
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 14 CALEDHGCEHTCKNILGG-YECSCKIGYELHSDGKICVGSVKARDACGGI 62
C E+ GCE C + G C C GY L +DG C +V+ CG I
Sbjct: 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY--PCGKI 49
>2wph_E Coagulation factor IXA light chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E
3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*
Length = 59
Score = 57.1 bits (138), Expect = 3e-11
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 179 CMTNNGGCQHECRNTIG-SYICSCHNGYTLLENGHDC 214
C NG C+ C+N+ +CSC GY L EN C
Sbjct: 2 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSC 38
Score = 55.5 bits (134), Expect = 1e-10
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 14 CALEDHGCEHTCKNILGG-YECSCKIGYELHSDGKICVGSVKARDACGGILKHSNGTLT 71
C +++ CE CKN CSC GY L + K C +V CG + LT
Sbjct: 2 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVPF--PCGRVSVSQTSKLT 58
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 55.8 bits (135), Expect = 4e-10
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 174 TDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLL-ENGHDC 214
TD DEC N G C C N G++ C C L + G DC
Sbjct: 78 TDIDEC-ENGGFCSGVCHNLPGTFECICGPDSALAGQIGTDC 118
Score = 47.7 bits (114), Expect = 2e-07
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 175 DKDECMTNNGGCQHECRN-TIGSYICSCHNGYTLLENGHDC 214
D C C+++C+ SY+C C G+ + +
Sbjct: 3 PVDPC--FRANCEYQCQPLDQTSYLCVCAEGFAPIPHEPHR 41
Score = 47.7 bits (114), Expect = 2e-07
Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 12 DECALEDHGCEHTCKNILGGYECSCKIGYELH-SDGKIC 49
DEC C C N+ G +EC C L G C
Sbjct: 81 DECE-NGGFCSGVCHNLPGTFECICGPDSALAGQIGTDC 118
Score = 45.4 bits (108), Expect = 2e-06
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 175 DKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 214
+ + N C +C C C GY L++G C
Sbjct: 40 HRCQMFCNQTACPADCDPN-TQASCECPEGYI-LDDGFIC 77
Score = 41.6 bits (98), Expect = 4e-05
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 12 DECALEDHGCEHTCKNI-LGGYECSCKIGYELHSDGKIC 49
D C CE+ C+ + Y C C G+
Sbjct: 5 DPCF--RANCEYQCQPLDQTSYLCVCAEGFAPIPHEPHR 41
Score = 40.8 bits (96), Expect = 7e-05
Identities = 11/39 (28%), Positives = 12/39 (30%), Gaps = 2/39 (5%)
Query: 12 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICV 50
+ C C C C GY L DG IC
Sbjct: 42 CQMFCNQTACPADCDP-NTQASCECPEGYIL-DDGFICT 78
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 54.1 bits (129), Expect = 2e-08
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 177 DECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGH 212
+EC+ NNGGC H C + Y C C +G+ L+
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR 36
Score = 48.3 bits (114), Expect = 2e-06
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 12 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 49
+EC + GC H C ++ GYEC C G++L + +
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE 38
Score = 40.6 bits (94), Expect = 5e-04
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 6/43 (13%)
Query: 178 ECMTNNGGCQHECRNT------IGSYICSCHNGYTLLENGHDC 214
+NGGCQ+ C + C+C +G L + C
Sbjct: 354 RTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 396
Score = 39.8 bits (92), Expect = 9e-04
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 11 FDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 49
DEC + C C N+ GGY+C C+ G++L K C
Sbjct: 40 IDECQ-DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 77
Score = 38.3 bits (88), Expect = 0.003
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 6/44 (13%)
Query: 13 ECALEDHGCEHTC------KNILGGYECSCKIGYELHSDGKICV 50
L + GC++ C + C+C G L D + C+
Sbjct: 354 RTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 397
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 51.3 bits (123), Expect = 6e-08
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 177 DECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKE 216
C +NG C C S +CSC GYTL +NG C
Sbjct: 82 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIP 121
Score = 40.5 bits (95), Expect = 3e-04
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 12 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 49
C+L++ C+ C CSC GY L +GK C
Sbjct: 82 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 119
Score = 39.7 bits (93), Expect = 4e-04
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 174 TDKDECMTNNGGCQHECRNTIGSYICSCHNGYT 206
D D+C T+ Q +C++ +G Y C+C G+
Sbjct: 40 KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFE 72
Score = 30.9 bits (70), Expect = 0.38
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 12 DECALEDHGCEHTCKNILGGYECSCKIGYE 41
D+C + CK+ LG Y C+C G+E
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFE 72
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 49.8 bits (119), Expect = 9e-08
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 174 TDKDECMTNNGGCQH--ECRNTIGSYICSCHNGYTLLENGHDC 214
D DEC + C C NT+GSY C C G+ +
Sbjct: 94 QDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNN 136
Score = 48.3 bits (115), Expect = 3e-07
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 12 DECALEDHGCEH--TCKNILGGYECSCKIGYELHSDGKICV 50
DEC+ H C+ C N +G Y C C+ G++
Sbjct: 97 DECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQ 137
Score = 47.9 bits (114), Expect = 4e-07
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 174 TDKDECMTNNGGC---QHECRNTIGSYICSCHNGYTLLENGHDCKEG 217
D +EC T + +C NT GSY C C GY + K
Sbjct: 42 DDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNE 88
Score = 39.8 bits (93), Expect = 2e-04
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 12 DECALEDHGC---EHTCKNILGGYECSCKIGYELHSDGKICVG 51
+ECA C N G Y+C C GYE S K
Sbjct: 45 NECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKN 87
Score = 32.9 bits (75), Expect = 0.060
Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 182 NNGGCQHECR---NTIGSYICSCHNGYTLLENGHDCKEGGC 219
++ GC C + + + C C+ G++ C
Sbjct: 1 DSRGCARWCPQDSSCVNATACRCNPGFSSFSEIITTPMETC 41
Score = 29.4 bits (66), Expect = 0.93
Identities = 7/44 (15%), Positives = 13/44 (29%), Gaps = 9/44 (20%)
Query: 12 DECALEDHGCEHTCKNILGGYECSCKIGYE-----LHSDGKICV 50
CA C + + C C G+ + + + C
Sbjct: 3 RGCA---RWC-PQDSSCVNATACRCNPGFSSFSEIITTPMETCD 42
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 49.3 bits (118), Expect = 1e-07
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 174 TDKDECMTN---NGGCQHECRNTIGS-YICSCHNGYTLLENGHDCKE 216
T KD+ + NGGC+ C + G+ C CH GY+LL +G C
Sbjct: 83 THKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTP 129
Score = 36.5 bits (85), Expect = 0.003
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 174 TDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 214
+D D+C ++ C++ + SYIC C + G +C
Sbjct: 45 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFE----GRNC 81
Score = 32.7 bits (75), Expect = 0.056
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 20 GCEHTCKNILG-GYECSCKIGYELHSDGKIC 49
GCE C + G C C GY L +DG C
Sbjct: 97 GCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 127
Score = 30.0 bits (68), Expect = 0.58
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 12 DECALEDHGCEH--TCKNILGGYECSCKIGYE 41
D+CA C++ +CK+ L Y C C +E
Sbjct: 48 DQCA--SSPCQNGGSCKDQLQSYICFCLPAFE 77
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 49.2 bits (118), Expect = 1e-07
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 177 DECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKE 216
C +NG C C S +CSC GYTL +NG C
Sbjct: 82 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIP 121
Score = 39.2 bits (92), Expect = 3e-04
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 12 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 49
C+L++ C+ C CSC GY L +GK C
Sbjct: 82 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 119
Score = 35.3 bits (82), Expect = 0.007
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 8/43 (18%)
Query: 174 TDKDECMTNNGGCQHE--CRNTIGSYICSCHNGYTLLENGHDC 214
D D+C T+ CQ++ C++ +G Y C+C G+ G +C
Sbjct: 40 KDGDQCETSP--CQNQGKCKDGLGEYTCTCLEGFE----GKNC 76
Score = 29.2 bits (66), Expect = 0.91
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 12 DECALEDHGCEH--TCKNILGGYECSCKIGYE 41
D+C C++ CK+ LG Y C+C G+E
Sbjct: 43 DQCE--TSPCQNQGKCKDGLGEYTCTCLEGFE 72
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 49.7 bits (119), Expect = 4e-07
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 176 KDECMT-NNGGCQHECRNTIGSYICSCHNGYTLLENGHDCK 215
K+EC GCQH C SY CSC GY L E+ C
Sbjct: 2 KNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCV 42
Score = 43.2 bits (102), Expect = 5e-05
Identities = 21/67 (31%), Positives = 24/67 (35%), Gaps = 6/67 (8%)
Query: 12 DECALE-DHGCEHTCKNILGGYECSCKIGYELHSDGKICVGSVKARDACGGILKHSNGTL 70
+EC E GC+H C Y CSC GY L D K C D C + S
Sbjct: 3 NECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQC----VPHDQCACGVLTSEKRA 58
Query: 71 TSP-SFP 76
P
Sbjct: 59 PDLQDLP 65
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 49.9 bits (118), Expect = 5e-07
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 177 DECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGGCKYEITAPNGVIKTPNHP 236
+EC G C C N+ G++ C C GY L + CK G + + N + P
Sbjct: 2 NEC-AEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLP 60
Query: 237 DYY 239
Sbjct: 61 HRS 63
Score = 44.1 bits (103), Expect = 3e-05
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 12 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 49
+ECA E+ C C N G ++C C+ GYEL D + C
Sbjct: 2 NECA-EEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSC 38
Score = 41.0 bits (95), Expect = 3e-04
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 179 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKE 216
C NNGGC H C + +Y C+C G+ + N H C
Sbjct: 307 CGDNNGGCTHLCLPSGQNYTCACPTGFRKI-NSHACAL 343
Score = 37.2 bits (85), Expect = 0.005
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 7 RWFKFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICV 50
+ + C + GC H C Y C+C G+ + C
Sbjct: 300 QPAGKNRCGDNNGGCTHLCLPSGQNYTCACPTGFRK-INSHACA 342
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 49.0 bits (116), Expect = 1e-06
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 179 CMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 214
C NGGC H C C+C G+ L+ + C
Sbjct: 581 CAEENGGCSHLCLYRPQGLRCACPIGFELISDMKTC 616
Score = 46.0 bits (108), Expect = 1e-05
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 14 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICV 50
CA E+ GC H C G C+C IG+EL SD K C+
Sbjct: 581 CAEENGGCSHLCLYRPQGLRCACPIGFELISDMKTCI 617
Score = 27.9 bits (61), Expect = 5.6
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 179 CMTNNGGCQHEC--RNTIGSYICSCHNGYTLLENGHDCKEGGCKYEITAPNGVIK 231
C +NGGC H C Y C+C G LLENG CK+G + + A ++
Sbjct: 275 CGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLR 329
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 43.9 bits (104), Expect = 9e-06
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 174 TDKDECMTNNGGCQHECRNT-IGSYICSCHNGYTLLENGHDCKE 216
D NG C+ C+ +CSC GY L + CK
Sbjct: 84 LDATCN-IKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKP 126
Score = 36.2 bits (84), Expect = 0.005
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 174 TDKDECMTNNGGCQHECRNTIGSYICSCHNGYT 206
D D+C N C++ I SY C C G+
Sbjct: 46 VDGDQCEPNPCLNGGLCKDDINSYECWCQVGFE 78
Score = 31.9 bits (73), Expect = 0.12
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 10 KFDECALEDHGCEH-TCKNILGGYECSCKIGYELHSDGKIC 49
C +++ C+ CSC GY L D K C
Sbjct: 84 LDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSC 124
Score = 29.6 bits (67), Expect = 0.78
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 12 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 49
D+C CK+ + YEC C++G+E GK C
Sbjct: 49 DQCEPNPCLNGGLCKDDINSYECWCQVGFE----GKNC 82
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 44.3 bits (103), Expect = 1e-05
Identities = 24/205 (11%), Positives = 41/205 (20%), Gaps = 32/205 (15%)
Query: 12 DECALEDHGC--EHTCKNILGGYECSCKIGYELHSDGKICVGSVKARDACGGILKHSNGT 69
+ A+ + + C C G C + G G
Sbjct: 3 EASAVTVDTICXNGQLVQMSNHFXCMCNEGLVH-LSENTCEEXNECXXETLGXACGEFGQ 61
Query: 70 LTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKIGD 129
+ + ++ Y L + + D
Sbjct: 62 CI-----ENPDPAQVNMYXCGCIEGYT------------------------LXEDTCVLD 92
Query: 130 SFKSQGVFCGSKLPPVILSEGNALRIEFHSDNSVQKSGFSAFFFTDKDECMTNNGGCQHE 189
+ + LSE + T + C
Sbjct: 93 VCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEV 152
Query: 190 CRNTIGSYICSCHNGYTLLENGHDC 214
C N G Y C C G+T + C
Sbjct: 153 CXNVEGVYXCQCMEGFTFDXEXNVC 177
Score = 38.9 bits (89), Expect = 8e-04
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 12 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICVG 51
C L + C N+ G Y C C G+ + +C+G
Sbjct: 140 TACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDXEXNVCLG 179
Score = 36.2 bits (82), Expect = 0.008
Identities = 10/66 (15%), Positives = 19/66 (28%)
Query: 174 TDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGGCKYEITAPNGVIKTP 233
T C ++ + Y C C GYTL E+ + +++
Sbjct: 51 TLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYL 110
Query: 234 NHPDYY 239
+
Sbjct: 111 SEIQSA 116
Score = 33.5 bits (75), Expect = 0.058
Identities = 14/107 (13%), Positives = 26/107 (24%), Gaps = 5/107 (4%)
Query: 174 TDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLL-----ENGHDCKEGGCKYEITAPNG 228
+ + + + C C+ G L E ++C
Sbjct: 2 AEASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQ 61
Query: 229 VIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYD 275
I+ P+ CI +T + V Q C +
Sbjct: 62 CIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVE 108
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 44.7 bits (106), Expect = 2e-05
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 174 TDKDECMTN-NGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGGC 219
K+EC GCQH C SY CSC GY L E+ C
Sbjct: 41 LAKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQ 87
Score = 37.4 bits (87), Expect = 0.004
Identities = 16/49 (32%), Positives = 19/49 (38%)
Query: 9 FKFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICVGSVKARD 57
K + GC+H C Y CSC GY L D K CV +
Sbjct: 42 AKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCAC 90
Score = 33.1 bits (76), Expect = 0.091
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 6/35 (17%)
Query: 174 TDKDECMTN---NGGCQHECRNTIGSYICSCHNGY 205
C++ + G C+++I Y C+C GY
Sbjct: 3 KGGSPCISQPCLHNG---SCQDSIWGYTCTCSPGY 34
Score = 29.7 bits (67), Expect = 1.4
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 4/27 (14%)
Query: 24 TCKNILGGYECSCKIGYELHSDGKICV 50
+C++ + GY C+C GYE G C
Sbjct: 18 SCQDSIWGYTCTCSPGYE----GSNCE 40
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 43.2 bits (101), Expect = 6e-05
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 4/63 (6%)
Query: 12 DECALEDHGC--EHTCKNILGGYECSCKIGYELHSDGKICVGSVKARDACGGILKHSNGT 69
CA H C C++ G+ C C Y +G+ CV + G +
Sbjct: 6 QTCANNRHQCSVHAECRDYATGFCCRCVANY--TGNGRQCVAEGSPQRVNGKVKGRIFVG 63
Query: 70 LTS 72
+
Sbjct: 64 SSQ 66
Score = 40.1 bits (93), Expect = 5e-04
Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 175 DKDECMTNNGGC--QHECRNTIGSYICSCHNGYTLLENGHDCKE 216
+ C N C ECR+ + C C YT NG C
Sbjct: 4 AQQTCANNRHQCSVHAECRDYATGFCCRCVANYT--GNGRQCVA 45
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 42.8 bits (100), Expect = 9e-05
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 179 CMTNNGGCQHEC--RNTIGSYICSCHNGYTLLENGHDCKEG 217
C +NGGC H C Y C+C G LLENG CK+G
Sbjct: 270 CGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDG 310
Score = 37.0 bits (85), Expect = 0.005
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 14 CALEDHGCEHTCKNI--LGGYECSCKIGYELHSDGKICV 50
C +++ GC H C Y+C+C G +L +GK C
Sbjct: 270 CGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCK 308
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 41.2 bits (96), Expect = 3e-04
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 6/44 (13%)
Query: 177 DECMTNNGGCQHECRNT------IGSYICSCHNGYTLLENGHDC 214
+ +NGGCQ+ C + C+C +G L + C
Sbjct: 271 ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 314
Score = 39.3 bits (91), Expect = 0.001
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 12 DECALEDHGCEHTC------KNILGGYECSCKIGYELHSDGKICV 50
+ L + GC++ C + C+C G L D + C+
Sbjct: 271 ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 315
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 40.8 bits (95), Expect = 5e-04
Identities = 11/39 (28%), Positives = 12/39 (30%), Gaps = 6/39 (15%)
Query: 174 TDKDECMTNNGGCQ-----HECRNTIGSYIC-SCHNGYT 206
D DEC C C NT + C C Y
Sbjct: 42 EDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYR 80
Score = 35.0 bits (80), Expect = 0.038
Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 8/52 (15%)
Query: 12 DECALEDHGC-----EHTCKNILGGYEC-SCKIGYELHSDGKICVGSVKARD 57
DECAL C C N G+ C C Y + + VG A+
Sbjct: 45 DECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYR--GNQPVGVGLEAAKT 94
Score = 33.1 bits (75), Expect = 0.14
Identities = 12/52 (23%), Positives = 16/52 (30%), Gaps = 8/52 (15%)
Query: 174 TDKDECMTNNGGCQH--ECRN----TIGSYICSCHNGYTLLENGHDCKEGGC 219
++ C C EC + Y C C GY +G C E
Sbjct: 100 EPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYA--GDGLICGEDSD 149
Score = 31.5 bits (71), Expect = 0.44
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 175 DKDECMTNNGGCQHECRNT-IGSYIC-SCHNGYTLLENGHDC 214
D D C++N +C + GS+ C C G+ NG C
Sbjct: 2 DPDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFL--GNGTHC 41
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 40.9 bits (95), Expect = 5e-04
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 179 CMTNNGGCQHECRNT-IGSYICSCHNGYTLLENGHDCKE 216
C +NGGC H C G+ CSC LL++ C
Sbjct: 582 CAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSCGG 620
Score = 36.7 bits (84), Expect = 0.008
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Query: 172 FFTDKDECMTNNGGCQHEC-RNTIGSYICSCHNGYTLLENGHDCKEGGCKYEITAPNGVI 230
+ +EC ++NG C H C +G ++C C Y+L + C + + +
Sbjct: 261 RQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAIN 320
Query: 231 KTPNHPDYYPS 241
+ P
Sbjct: 321 RMVIDEQQSPD 331
Score = 36.7 bits (84), Expect = 0.011
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 11 FDECALEDHGCEHTCKNI-LGGYECSCKIGYELHSDGKICVGSVK 54
CA ++ GC H C G CSC + L D C G+
Sbjct: 579 QHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSCGGTKH 623
Score = 34.0 bits (77), Expect = 0.063
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 5 RIRWFKFDECALEDHGCEHTCKNI-LGGYECSCKIGYELHSDGKIC 49
R ++ECA + C H C + +GG+ C C Y L++D + C
Sbjct: 259 SSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTC 304
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 37.2 bits (87), Expect = 0.002
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Query: 175 DKDECMTNNGGCQHE--CRNTIGSYICSCHNGYTLLENGHDC 214
D DEC C+H C NT+GS+ C C GYT G C
Sbjct: 4 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYT----GPRC 41
Score = 36.0 bits (84), Expect = 0.004
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 12 DECALEDHGCEH--TCKNILGGYECSCKIGYE 41
DEC+L + CEH C N LG +EC C GY
Sbjct: 6 DECSLGANPCEHAGKCINTLGSFECQCLQGYT 37
Score = 34.5 bits (80), Expect = 0.015
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 10/44 (22%)
Query: 174 TDKDECMTN---NGGCQHECRNTIGSYICSCHNGYTLLENGHDC 214
+ DEC ++ + G C + I + C C G+T GH C
Sbjct: 81 VNTDECASSPCLHNG---RCLDKINEFQCECPTGFT----GHLC 117
Score = 33.7 bits (78), Expect = 0.028
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 8/43 (18%)
Query: 174 TDKDECMTNNGGCQHE--CRNTIGSYICSCHNGYTLLENGHDC 214
D +EC++N CQ++ C + IG + C C GY G C
Sbjct: 43 IDVNECVSNP--CQNDATCLDQIGEFQCICMPGYE----GVHC 79
Score = 30.3 bits (69), Expect = 0.39
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 8/40 (20%)
Query: 12 DECALEDHGCEH--TCKNILGGYECSCKIGYELHSDGKIC 49
+EC + C++ TC + +G ++C C GYE G C
Sbjct: 46 NECV--SNPCQNDATCLDQIGEFQCICMPGYE----GVHC 79
Score = 29.9 bits (68), Expect = 0.56
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 12 DECALEDHGCEH--TCKNILGGYECSCKIGYE 41
DECA C H C + + ++C C G+
Sbjct: 84 DECA--SSPCLHNGRCLDKINEFQCECPTGFT 113
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 38.3 bits (88), Expect = 0.003
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 6/72 (8%)
Query: 177 DECMTNNGGCQHEC------RNTIGSYICSCHNGYTLLENGHDCKEGGCKYEITAPNGVI 230
+ +NGGCQ+ C + C+C +G L + C T +
Sbjct: 665 ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEAEAAVATQETSTV 724
Query: 231 KTPNHPDYYPSK 242
+ ++
Sbjct: 725 RLKVSSTAVRTQ 736
Score = 34.8 bits (79), Expect = 0.036
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 12 DECALEDHGCEHTC------KNILGGYECSCKIGYELHSDGKICV 50
+ L + GC++ C + C+C G L D + C+
Sbjct: 665 ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 709
Score = 34.8 bits (79), Expect = 0.038
Identities = 18/100 (18%), Positives = 30/100 (30%)
Query: 177 DECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGGCKYEITAPNGVIKTPNHP 236
+EC+ NNGGC H C + Y C C +G+ L+ C+ T +
Sbjct: 313 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGY 372
Query: 237 DYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDH 276
+ + T + + F
Sbjct: 373 KCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLD 412
Score = 29.4 bits (65), Expect = 1.9
Identities = 18/74 (24%), Positives = 22/74 (29%), Gaps = 1/74 (1%)
Query: 175 DKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKEGGCKYEITAPNGVIKTPN 234
D DEC + C C N G Y C C G+ L + CK G + N
Sbjct: 351 DIDECQ-DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKM 409
Query: 235 HPDYYPSKRECIWH 248
D
Sbjct: 410 TLDRSEYTSLIPNL 423
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 37.9 bits (87), Expect = 0.004
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 6/47 (12%)
Query: 177 DECMTNNGGCQHEC------RNTIGSYICSCHNGYTLLENGHDCKEG 217
+ +NGGCQ+ C + C+C +G L + C
Sbjct: 647 ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTE 693
Score = 34.4 bits (78), Expect = 0.051
Identities = 21/121 (17%), Positives = 33/121 (27%), Gaps = 15/121 (12%)
Query: 176 KDECMTNNGGCQHECRNTIGSYICSCHNGYTLLEN---------------GHDCKEGGCK 220
+EC+ NNGGC H C + Y C C +G+ L+ C
Sbjct: 294 TNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGG 353
Query: 221 YEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVVMY 280
Y+ G P+ FT R + + +
Sbjct: 354 YKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDT 413
Query: 281 D 281
+
Sbjct: 414 E 414
Score = 34.0 bits (77), Expect = 0.077
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 12 DECALEDHGCEHTC------KNILGGYECSCKIGYELHSDGKICV 50
+ L + GC++ C + C+C G L D + C+
Sbjct: 647 ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 691
Score = 28.6 bits (63), Expect = 3.4
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 12 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICVGSVKARDACG 60
+EC + GC H C ++ GYEC C G++L + C + +D
Sbjct: 295 NECLDNNGGCSHVCNDLKIGYECLCPDGFQL-VAQRRCEDIDECQDPDT 342
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like
domain, structure and function, coagulation factor;
1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 33.6 bits (78), Expect = 0.004
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 10/43 (23%)
Query: 175 DKDECMTN---NGGCQHECRNTIGSYICSCHNGYTLLENGHDC 214
D D+C +N NGG C++ I SY C C G+ G +C
Sbjct: 2 DGDQCESNPCLNGG---SCKDDINSYECWCPFGFE----GKNC 37
Score = 28.6 bits (65), Expect = 0.27
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 8/40 (20%)
Query: 12 DECALEDHGCEH--TCKNILGGYECSCKIGYELHSDGKIC 49
D+C + C + +CK+ + YEC C G+E GK C
Sbjct: 4 DQCE--SNPCLNGGSCKDDINSYECWCPFGFE----GKNC 37
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 33.2 bits (76), Expect = 0.051
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 10/44 (22%)
Query: 174 TDKDECMTN---NGGCQHECRNTIGSYICSCHNGYTLLENGHDC 214
+ +EC NGG C + + +Y C C + G +C
Sbjct: 95 HNINECEVEPCKNGG---ICTDLVANYSCECPGEFM----GRNC 131
Score = 28.9 bits (65), Expect = 1.1
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 8/40 (20%)
Query: 12 DECALEDHGCEH--TCKNILGGYECSCKIGYELHSDGKIC 49
+EC C++ C +++ Y C C + G+ C
Sbjct: 98 NECE--VEPCKNGGICTDLVANYSCECPGEFM----GRNC 131
Score = 27.8 bits (62), Expect = 2.6
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 12/43 (27%)
Query: 177 DECMTN---NGGCQHECRNTI--GSYICSCHNGYTLLENGHDC 214
D C N NGG C + GS+ C C +G+T +C
Sbjct: 1 DICDPNPCENGG---ICLPGLADGSFSCECPDGFT----DPNC 36
Score = 27.8 bits (62), Expect = 3.0
Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 11/48 (22%)
Query: 174 TDKDECMTN---NGG-CQHE---CRNTIGSYICSCHNGYTLLENGHDC 214
T C N NGG C+ +T Y+C C G+ G C
Sbjct: 50 TSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFN----GIHC 93
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 32.4 bits (74), Expect = 0.094
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 176 KDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDCKE 216
C + EC TI +Y C C G++ G C++
Sbjct: 119 TAACTNTSCSGHGECVETINNYTCKCDPGFS----GLKCEQ 155
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.15
Identities = 57/317 (17%), Positives = 89/317 (28%), Gaps = 133/317 (41%)
Query: 29 LGGYECSCKI-GYELHSDGKICVGSVKARDACGGILKHSNGTLTSPSFPDLYIKNKTCI- 86
L Y + K+ G+ + G++ R G HS G +T+ I
Sbjct: 246 LAHYVVTAKLLGF---TPGEL-------RSYLKGATGHSQGLVTA-----------VAIA 284
Query: 87 ----WEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDN----LTVFSKIGDSFKSQGVFC 138
WE +F + + +TV IG + +
Sbjct: 285 ETDSWE-----------SF----------------FVSVRKAITVLFFIG--VRCYEAYP 315
Query: 139 GSKLPPVILS------EGNA---LRIEFHSDNSVQKSGFSAFFFTDKDECMTNNGGCQH- 188
+ LPP IL EG L I + VQ + +K TN H
Sbjct: 316 NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQD-------YVNK----TN----SHL 360
Query: 189 ECRNTIGSYICSCHNGYTLLENGHDCK---------EGGCKY--EITAPNGVI--KTPNH 235
+ I S L NG G + AP+G+ + P
Sbjct: 361 PAGKQV--EI-S-------LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF- 409
Query: 236 PDYYPSKR--ECIWHF--TTTPGHRIKLVFQEFELEPHQTCAYDHVVMYDGDSPDSLTLG 291
S+R + F +P H A D + + D +
Sbjct: 410 -----SERKLKFSNRFLPVASPFH-----------SHLLVPASDLI---NKDLVKNNVSF 450
Query: 292 RFCGIKLP-YPIITGSN 307
I++P Y GS+
Sbjct: 451 NAKDIQIPVYDTFDGSD 467
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.64
Identities = 31/186 (16%), Positives = 57/186 (30%), Gaps = 61/186 (32%)
Query: 2 IKLRIRWF----KFDECALE-DHGCEHTCKNILGGYECSCKIGYEL--HSDGKICVGSVK 54
I+ +R ++ C L + + SCKI L ++ +
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQN---AKAWNAFNLSCKI---LLTTRFKQV-TDFLS 282
Query: 55 ARDACGGILKHSNGTLTSPSFPDLYIKNKTCIWEIVA--PPQ------YRISL------- 99
A L H + TLT L +K + P + R+S+
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLK---YLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 100 ------NFTHFDIEG-NNLFQSSCE----------YDNLTVFSKIGDSFKSQGVFCGSKL 142
N+ H + + + +SS +D L+VF + +
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP------------SAHI 387
Query: 143 PPVILS 148
P ++LS
Sbjct: 388 PTILLS 393
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 29.4 bits (66), Expect = 0.89
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 176 KDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 214
C + Q EC TIG+Y CSC+ G+ G +C
Sbjct: 119 TASCQDMSCSKQGECLETIGNYTCSCYPGFY----GPEC 153
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 28.1 bits (63), Expect = 2.8
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 8/44 (18%)
Query: 174 TDKDECMTNNGGCQH--ECRNT-IGSYICSCHNGYTLLENGHDC 214
D + C T+ C + C NT Y CSC GY+ G +C
Sbjct: 129 KDLNYCGTHQP-CLNGGTCSNTGPDKYQCSCPEGYS----GPNC 167
>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion,
cytoplasmic vesicl lectin, virulence, EGF-like domain,
membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A
Length = 61
Score = 25.9 bits (56), Expect = 3.9
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 24 TCKNILGGYECSCKIGYELHSDGK 47
TCK GY C C GY + DG
Sbjct: 26 TCKETNSGYICRCNQGYRISLDGT 49
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide
oxidoreductase, C(4A)-peroxyflavin, crystallography,
conformational dynamics; HET: FAD; 2.00A {Streptococcus
pyogenes} PDB: 2bcp_A* 2bc1_A*
Length = 490
Score = 27.9 bits (63), Expect = 5.1
Identities = 7/52 (13%), Positives = 13/52 (25%), Gaps = 13/52 (25%)
Query: 210 NGHDCKEGGCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVF 261
K G +T P++ + IK+V+
Sbjct: 387 TLEKAKRLGFDAAVT----EYTDNQKPEFIEHGNFPVT---------IKIVY 425
>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase,
innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila
melanogaster}
Length = 408
Score = 27.9 bits (62), Expect = 5.1
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 33 ECSCKIGYELHSDGKICVGSVKARDACGG 61
CS + ++CVG +D+C G
Sbjct: 289 ACSQAYRRAVP-LSQLCVGGGDLQDSCKG 316
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 26.3 bits (58), Expect = 5.9
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 8/47 (17%)
Query: 165 KSGFSAFFFTDKDECMTN---NGGCQHECRNTI--GSYICSCHNGYT 206
SG + C NGG C+ + ++C C G+
Sbjct: 37 NSGRAQCHSVPVKSCSEPRCFNGG---TCQQALYFSDFVCQCPEGFA 80
>1nf9_A Phenazine biosynthesis protein PHZD; isochorismatase, enzyme,
phenazine pathway, hydrolase; HET: BOG; 1.50A
{Pseudomonas aeruginosa} SCOP: c.33.1.3 PDB: 1nf8_A*
3r77_A*
Length = 207
Score = 27.3 bits (61), Expect = 7.0
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 163 VQKSGFSAFFFTDKDECMTNNG 184
+ K +SAFF +D + M G
Sbjct: 120 LTKWRYSAFFHSDLLQRMRAAG 141
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 26.7 bits (59), Expect = 7.7
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 176 KDECMTNNGGCQHECRNTIGSYICSCHNGY 205
C + EC I +Y C+C GY
Sbjct: 119 TASCQPWSCSGHGECVEIINNYTCNCDVGY 148
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 27.1 bits (60), Expect = 8.7
Identities = 4/41 (9%), Positives = 10/41 (24%), Gaps = 3/41 (7%)
Query: 174 TDKDECMTNNGGCQHECRNTIGSYICSCHNGYTLLENGHDC 214
+ ++ S CH+ + + D
Sbjct: 264 LPSTRIKKSKALSGFSLQSCRHSIPVFCHSSF---YHDTDF 301
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein,
vitamin K-dependent protein, AXL/SKY/MER ligand, laminin
G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4
b.29.1.4 PDB: 2c5d_A*
Length = 422
Score = 27.1 bits (59), Expect = 9.9
Identities = 13/89 (14%), Positives = 28/89 (31%), Gaps = 7/89 (7%)
Query: 199 CSCHNGYTLLENGHDCKEGGCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIK 258
C G L ++ C++ + +K+ + F R+
Sbjct: 6 CDGRGGLKLSQDMDTCEDILPCVP-FSVAKSVKSLYLGRMFSGTPVIRLRFKRLQPTRLV 64
Query: 259 LVFQEFELEPHQTCAYDHVVMYDGDSPDS 287
F F +T + ++++ G DS
Sbjct: 65 AEFD-F-----RTFDPEGILLFAGGHQDS 87
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.455
Gapped
Lambda K H
0.267 0.0681 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,178,041
Number of extensions: 306118
Number of successful extensions: 1190
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1011
Number of HSP's successfully gapped: 319
Length of query: 330
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 236
Effective length of database: 4,077,219
Effective search space: 962223684
Effective search space used: 962223684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.8 bits)