Query psy8444
Match_columns 248
No_of_seqs 151 out of 1621
Neff 9.5
Searched_HMMs 46136
Date Fri Aug 16 19:00:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8444.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8444hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00431 CUB: CUB domain CUB d 99.9 1.9E-23 4.1E-28 150.1 13.2 110 10-119 1-110 (110)
2 cd00041 CUB CUB domain; extrac 99.9 4.4E-22 9.6E-27 143.5 14.7 112 10-121 1-113 (113)
3 PF00431 CUB: CUB domain CUB d 99.9 5.6E-22 1.2E-26 142.4 9.1 100 123-228 1-100 (110)
4 cd00041 CUB CUB domain; extrac 99.9 2.5E-21 5.5E-26 139.6 11.7 101 123-228 1-101 (113)
5 smart00042 CUB Domain first fo 99.9 7.1E-21 1.5E-25 135.0 13.2 101 19-119 1-102 (102)
6 smart00042 CUB Domain first fo 99.8 2.8E-20 6.1E-25 131.9 10.8 91 135-228 1-92 (102)
7 KOG4292|consensus 99.8 1.9E-18 4.1E-23 146.9 13.6 214 5-228 165-391 (454)
8 KOG4586|consensus 99.8 6E-18 1.3E-22 119.1 9.0 107 15-121 46-153 (156)
9 KOG4586|consensus 99.7 7.6E-18 1.6E-22 118.6 7.1 91 135-228 50-141 (156)
10 KOG4292|consensus 99.4 5.5E-13 1.2E-17 113.9 9.2 156 8-168 290-450 (454)
11 PF05428 CRF-BP: Corticotropin 98.6 4E-05 8.6E-10 62.6 20.0 171 15-208 64-269 (311)
12 PF05428 CRF-BP: Corticotropin 96.7 0.0067 1.4E-07 49.9 7.2 73 148-224 76-162 (311)
13 PF02408 CUB_2: CUB-like domai 96.2 0.078 1.7E-06 38.4 9.7 81 29-120 37-117 (120)
14 PF02408 CUB_2: CUB-like domai 95.9 0.087 1.9E-06 38.1 8.7 72 145-227 36-107 (120)
15 PF08248 Tryp_FSAP: Tryptophyl 22.9 55 0.0012 13.1 0.8 9 140-148 3-11 (12)
16 PF13473 Cupredoxin_1: Cupredo 22.0 2.7E+02 0.0058 19.0 5.3 68 155-245 35-102 (104)
17 KOG0281|consensus 20.7 1.2E+02 0.0025 26.4 3.2 45 148-194 436-480 (499)
No 1
>PF00431 CUB: CUB domain CUB domain entry Spermadhesins family entry Link to schematic domain picture by Peer Bork. ; InterPro: IPR000859 The CUB domain (for complement C1r/C1s, Uegf, Bmp1) is a structural motif of approximately 110 residues found almost exclusively in extracellular and plasma membrane-associated proteins, many of which are developmentally regulated [, ]. These proteins are involved in a diverse range of functions, including complement activation, developmental patterning, tissue repair, axon guidance and angiogenesis, cell signalling, fertilisation, haemostasis, inflammation, neurotransmission, receptor-mediated endocytosis, and tumour suppression [, ]. Many CUB-containing proteins are peptidases belonging to MEROPS peptidase families M12A (astacin) and S1A (chymotrypsin). Proteins containing a CUB domain include: Mammalian complement subcomponents C1s/C1r, which form the calcium-dependent complex C1, the first component of the classical pathway of the complement system. Cricetidae sp. (Hamster) serine protease Casp, which degrades type I and IV collagen and fibronectin in the presence of calcium. Mammalian complement-activating component of Ra-reactive factor (RARF), a protease that cleaves the C4 component of complement. Vertebrate enteropeptidase (3.4.21.9 from EC), a type II membrane protein of the intestinal brush border, which activates trypsinogen. Vertebrate bone morphogenic protein 1 (BMP-1), a protein which induces cartilage and bone formation and expresses metalloendopeptidase activity. Sea urchin blastula proteins BP10 and SpAN. Caenorhabditis elegans hypothetical proteins F42A10.8 and R151.5. Neuropilin (A5 antigen), a calcium-independent cell adhesion molecule that functions during the formation of certain neuronal circuits. Fibropellins I and III from Strongylocentrotus purpuratus (Purple sea urchin). Mammalian hyaluronate-binding protein TSG-6 (or PS4), a serum and growth factor induced protein. Mammalian spermadhesins. Xenopus laevis embryonic protein UVS.2, which is expressed during dorsoanterior development. Several of the above proteins consist of a catalytic domain together with several CUB domains interspersed by calcium-binding EGF domains. Some CUB domains appear to be involved in oligomerisation and/or recognition of substrates and binding partners. For example, in the complement proteases, the CUB domains mediate dimerisation and binding to collagen-like regions of target proteins (e.g. C1q for C1r/C1s). The structure of CUB domains consists of a beta-sandwich with a jelly-roll fold. Almost all CUB domains contain four conserved cysteines that probably form two disulphide bridges (C1-C2, C3-C4). The CUB1 domains of C1s and Map19 have calcium-binding sites [].; PDB: 1SFP_A 3KQ4_B 2WNO_A 2QQK_A 2QQL_A 2QQO_B 2QQM_A 3POJ_A 3POB_A 3POG_B ....
Probab=99.91 E-value=1.9e-23 Score=150.06 Aligned_cols=110 Identities=45% Similarity=0.874 Sum_probs=101.2
Q ss_pred CCcEEecCceEEeCCCCCCCCCCCCcEEEEEEeCCCCeEEEEEEEEEEcCCCCCcceEEEEEeCCCCCccceeccccccC
Q psy8444 10 CKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVVMYDGDSPDSLTLGRFCGIKL 89 (248)
Q Consensus 10 C~~~~~~~~G~i~SP~yP~~y~~~~~C~w~I~~~~g~~i~l~f~~f~l~~~~~C~~d~l~i~dg~~~~~~~~~~~cg~~~ 89 (248)
|++.++..+|.|+||+||..|+.+..|.|.|+++++.+|+|.|..|+++....|..|+|.|+++.......+.++||...
T Consensus 1 Cg~~~~~~~g~i~Sp~yp~~y~~~~~C~w~i~~~~~~~I~l~f~~~~~~~~~~c~~d~l~v~~g~~~~~~~~~~~cg~~~ 80 (110)
T PF00431_consen 1 CGGRLTNNSGIISSPNYPSNYPSNSDCTWTITAPPGHRIRLTFLSFDLESSDSCCQDYLEVYDGNDESSPLLGRFCGSSP 80 (110)
T ss_dssp SEEEECSSEEEEESTTTTS-SSSSEEEEEEEE-STTEEEEEEEEEEEB--TTTSTSSEEEEESSSSTTSEEEEEESSSSC
T ss_pred CcCEEECCeEEEECCCCCCCCCCCCcEeEEEEecccceeeeccccccceeeeeecccceeEEeeccccceeeeeccCCcC
Confidence 88999999999999999999999999999999999999999999999998888999999999999887788899999888
Q ss_pred CccEEEcCCEEEEEEEeCCCccCCCeEEEE
Q psy8444 90 PYPIITGSNQLYMMFKSDASVQRKGFIATH 119 (248)
Q Consensus 90 p~~~~s~~~~l~v~f~s~~~~~~~GF~~~y 119 (248)
|..+++.++.|+|+|+++......||+++|
T Consensus 81 ~~~i~s~~~~l~i~f~s~~~~~~~gF~~~y 110 (110)
T PF00431_consen 81 PPSIISSSNSLFIRFHSDSSNSSRGFKATY 110 (110)
T ss_dssp CEEEEESSSEEEEEEEESSSSTTSEEEEEE
T ss_pred CccEEECCCEEEEEEEECCCCCCccEEEEC
Confidence 889999999999999999999999999987
No 2
>cd00041 CUB CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
Probab=99.89 E-value=4.4e-22 Score=143.55 Aligned_cols=112 Identities=46% Similarity=0.907 Sum_probs=104.0
Q ss_pred CCcEEecC-ceEEeCCCCCCCCCCCCcEEEEEEeCCCCeEEEEEEEEEEcCCCCCcceEEEEEeCCCCCccceecccccc
Q psy8444 10 CKYEITAP-NGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVVMYDGDSPDSLTLGRFCGIK 88 (248)
Q Consensus 10 C~~~~~~~-~G~i~SP~yP~~y~~~~~C~w~I~~~~g~~i~l~f~~f~l~~~~~C~~d~l~i~dg~~~~~~~~~~~cg~~ 88 (248)
|++.+... .|.|.||+||..|+++..|.|.|++++|++|.|.|..|+++...+|..|+|.|+|+.......+.++||..
T Consensus 1 C~~~~~~~~~g~i~Sp~~p~~~~~~~~C~w~i~~~~g~~i~l~f~~~~l~~~~~C~~d~l~i~~g~~~~~~~~~~~Cg~~ 80 (113)
T cd00041 1 CGGTLTASTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLESSPNCSYDYLEIYDGPSTSSPLLGRFCGST 80 (113)
T ss_pred CCCEEccCCCeEEECCCCCCCCCCCCcEEEEEEcCCCCEEEEEEeCcccccCCCCCCcEEEEEcCCCCccccceeeECCC
Confidence 78888887 99999999999999999999999999999999999999999888899999999999876567788999998
Q ss_pred CCccEEEcCCEEEEEEEeCCCccCCCeEEEEEc
Q psy8444 89 LPYPIITGSNQLYMMFKSDASVQRKGFIATHTT 121 (248)
Q Consensus 89 ~p~~~~s~~~~l~v~f~s~~~~~~~GF~~~y~~ 121 (248)
.|..+.+.++.|.|+|+++......||.+.|.+
T Consensus 81 ~~~~~~s~~~~~~i~f~s~~~~~~~GF~~~y~~ 113 (113)
T cd00041 81 LPPPIISSGNSLTVRFRSDSSVTGRGFKATYSA 113 (113)
T ss_pred CCCCEEecCCEEEEEEEeCCCCCCCCEEEEEEC
Confidence 888999999999999999998889999999863
No 3
>PF00431 CUB: CUB domain CUB domain entry Spermadhesins family entry Link to schematic domain picture by Peer Bork. ; InterPro: IPR000859 The CUB domain (for complement C1r/C1s, Uegf, Bmp1) is a structural motif of approximately 110 residues found almost exclusively in extracellular and plasma membrane-associated proteins, many of which are developmentally regulated [, ]. These proteins are involved in a diverse range of functions, including complement activation, developmental patterning, tissue repair, axon guidance and angiogenesis, cell signalling, fertilisation, haemostasis, inflammation, neurotransmission, receptor-mediated endocytosis, and tumour suppression [, ]. Many CUB-containing proteins are peptidases belonging to MEROPS peptidase families M12A (astacin) and S1A (chymotrypsin). Proteins containing a CUB domain include: Mammalian complement subcomponents C1s/C1r, which form the calcium-dependent complex C1, the first component of the classical pathway of the complement system. Cricetidae sp. (Hamster) serine protease Casp, which degrades type I and IV collagen and fibronectin in the presence of calcium. Mammalian complement-activating component of Ra-reactive factor (RARF), a protease that cleaves the C4 component of complement. Vertebrate enteropeptidase (3.4.21.9 from EC), a type II membrane protein of the intestinal brush border, which activates trypsinogen. Vertebrate bone morphogenic protein 1 (BMP-1), a protein which induces cartilage and bone formation and expresses metalloendopeptidase activity. Sea urchin blastula proteins BP10 and SpAN. Caenorhabditis elegans hypothetical proteins F42A10.8 and R151.5. Neuropilin (A5 antigen), a calcium-independent cell adhesion molecule that functions during the formation of certain neuronal circuits. Fibropellins I and III from Strongylocentrotus purpuratus (Purple sea urchin). Mammalian hyaluronate-binding protein TSG-6 (or PS4), a serum and growth factor induced protein. Mammalian spermadhesins. Xenopus laevis embryonic protein UVS.2, which is expressed during dorsoanterior development. Several of the above proteins consist of a catalytic domain together with several CUB domains interspersed by calcium-binding EGF domains. Some CUB domains appear to be involved in oligomerisation and/or recognition of substrates and binding partners. For example, in the complement proteases, the CUB domains mediate dimerisation and binding to collagen-like regions of target proteins (e.g. C1q for C1r/C1s). The structure of CUB domains consists of a beta-sandwich with a jelly-roll fold. Almost all CUB domains contain four conserved cysteines that probably form two disulphide bridges (C1-C2, C3-C4). The CUB1 domains of C1s and Map19 have calcium-binding sites [].; PDB: 1SFP_A 3KQ4_B 2WNO_A 2QQK_A 2QQL_A 2QQO_B 2QQM_A 3POJ_A 3POB_A 3POG_B ....
Probab=99.87 E-value=5.6e-22 Score=142.37 Aligned_cols=100 Identities=39% Similarity=0.726 Sum_probs=87.1
Q ss_pred cCCeEEecCCcceeeecCCCCCCCCCCCCCceEEEEeCCCCeEEEEEeEEEeeCCCCCCCcEEEEEeCCCCCcCCcceec
Q psy8444 123 CGGHLQAQDYKRHLYSHARYGHDNYGKSMDCDWTIEAEPGKNVHLTFLTFDIESNKDCEYDYVEVYSGLDSSVSQASYGR 202 (248)
Q Consensus 123 C~~~~~~~~~~~~~~~Sp~y~p~~yp~~~~C~w~I~~p~~~~i~l~f~~f~l~~~~~C~~d~l~I~dg~~~~~~~~~~~~ 202 (248)
||+.+.. ..|+|+||+| |..||++.+|.|+|++|++++|+|+|.+|+|+....|..|+|+|+||.... ...+++
T Consensus 1 Cg~~~~~---~~g~i~Sp~y-p~~y~~~~~C~w~i~~~~~~~I~l~f~~~~~~~~~~c~~d~l~v~~g~~~~--~~~~~~ 74 (110)
T PF00431_consen 1 CGGRLTN---NSGIISSPNY-PSNYPSNSDCTWTITAPPGHRIRLTFLSFDLESSDSCCQDYLEVYDGNDES--SPLLGR 74 (110)
T ss_dssp SEEEECS---SEEEEESTTT-TS-SSSSEEEEEEEE-STTEEEEEEEEEEEB--TTTSTSSEEEEESSSSTT--SEEEEE
T ss_pred CcCEEEC---CeEEEECCCC-CCCCCCCCcEeEEEEecccceeeeccccccceeeeeecccceeEEeecccc--ceeeee
Confidence 7777554 3459999999 999999999999999999999999999999998888999999999999886 889999
Q ss_pred ccCCCCCCcEEecCCEEEEEEeeeeE
Q psy8444 203 FCGTTVALKFQSFRDLRIMTSVHMIM 228 (248)
Q Consensus 203 ~cg~~~p~~~~S~~n~~~v~f~s~~~ 228 (248)
+||...|..++|.++.|+|+|.++..
T Consensus 75 ~cg~~~~~~i~s~~~~l~i~f~s~~~ 100 (110)
T PF00431_consen 75 FCGSSPPPSIISSSNSLFIRFHSDSS 100 (110)
T ss_dssp ESSSSCCEEEEESSSEEEEEEEESSS
T ss_pred ccCCcCCccEEECCCEEEEEEEECCC
Confidence 99988889999999999999998655
No 4
>cd00041 CUB CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
Probab=99.87 E-value=2.5e-21 Score=139.57 Aligned_cols=101 Identities=39% Similarity=0.727 Sum_probs=92.1
Q ss_pred cCCeEEecCCcceeeecCCCCCCCCCCCCCceEEEEeCCCCeEEEEEeEEEeeCCCCCCCcEEEEEeCCCCCcCCcceec
Q psy8444 123 CGGHLQAQDYKRHLYSHARYGHDNYGKSMDCDWTIEAEPGKNVHLTFLTFDIESNKDCEYDYVEVYSGLDSSVSQASYGR 202 (248)
Q Consensus 123 C~~~~~~~~~~~~~~~Sp~y~p~~yp~~~~C~w~I~~p~~~~i~l~f~~f~l~~~~~C~~d~l~I~dg~~~~~~~~~~~~ 202 (248)
|++.+... ..|.|.||+| |..||++.+|.|.|++|+|++|.|+|.+|+|+....|..|+|+|+||.... ...+++
T Consensus 1 C~~~~~~~--~~g~i~Sp~~-p~~~~~~~~C~w~i~~~~g~~i~l~f~~~~l~~~~~C~~d~l~i~~g~~~~--~~~~~~ 75 (113)
T cd00041 1 CGGTLTAS--TSGTISSPNY-PNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLESSPNCSYDYLEIYDGPSTS--SPLLGR 75 (113)
T ss_pred CCCEEccC--CCeEEECCCC-CCCCCCCCcEEEEEEcCCCCEEEEEEeCcccccCCCCCCcEEEEEcCCCCc--ccccee
Confidence 78887776 3458999999 999999999999999999999999999999998889999999999998764 678999
Q ss_pred ccCCCCCCcEEecCCEEEEEEeeeeE
Q psy8444 203 FCGTTVALKFQSFRDLRIMTSVHMIM 228 (248)
Q Consensus 203 ~cg~~~p~~~~S~~n~~~v~f~s~~~ 228 (248)
+||...|..++|++|.|.|+|.++..
T Consensus 76 ~Cg~~~~~~~~s~~~~~~i~f~s~~~ 101 (113)
T cd00041 76 FCGSTLPPPIISSGNSLTVRFRSDSS 101 (113)
T ss_pred eECCCCCCCEEecCCEEEEEEEeCCC
Confidence 99998888899999999999998865
No 5
>smart00042 CUB Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein. This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Probab=99.86 E-value=7.1e-21 Score=134.96 Aligned_cols=101 Identities=48% Similarity=0.901 Sum_probs=90.8
Q ss_pred eEEeCCCCCCCCCCCCcEEEEEEeCCCCeEEEEEEEEEEcCCCCCcceEEEEEeCCCCCccceeccccccCCc-cEEEcC
Q psy8444 19 GVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVVMYDGDSPDSLTLGRFCGIKLPY-PIITGS 97 (248)
Q Consensus 19 G~i~SP~yP~~y~~~~~C~w~I~~~~g~~i~l~f~~f~l~~~~~C~~d~l~i~dg~~~~~~~~~~~cg~~~p~-~~~s~~ 97 (248)
|.|+||+||..|+++.+|.|.|++++|.+|.|.|..|+|+....|..|+|.|+++.......+.++||...|. .+.+.+
T Consensus 1 G~i~Sp~yP~~y~~~~~C~w~i~~~~g~~i~l~f~~~~l~~~~~C~~d~l~i~~g~~~~~~~~~~~Cg~~~~~~~~~s~~ 80 (102)
T smart00042 1 GTITSPNYPQSYPNNLDCVWTIRAPPGYRIELQFTDFDLESSDNCEYDYVEIYDGPSASSPLLGRFCGSELPPPVISSSS 80 (102)
T ss_pred CEEeCCCCCcCCCCCCcEEEEEECCCCeEEEEEEEEEeccCCCCeeEeEEEEEeCCCCCCceeEEEecCcCCCCeEEcCC
Confidence 7899999999999999999999999999999999999999888899999999999875566778999988655 466669
Q ss_pred CEEEEEEEeCCCccCCCeEEEE
Q psy8444 98 NQLYMMFKSDASVQRKGFIATH 119 (248)
Q Consensus 98 ~~l~v~f~s~~~~~~~GF~~~y 119 (248)
+.|.|+|+++......||.++|
T Consensus 81 n~~~i~f~s~~~~~~~GF~~~y 102 (102)
T smart00042 81 NSLTVTFVSDSSVQKRGFSARY 102 (102)
T ss_pred CEEEEEEEeCCCCCCCCeEEEC
Confidence 9999999999877789999976
No 6
>smart00042 CUB Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein. This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Probab=99.84 E-value=2.8e-20 Score=131.86 Aligned_cols=91 Identities=37% Similarity=0.721 Sum_probs=81.0
Q ss_pred eeeecCCCCCCCCCCCCCceEEEEeCCCCeEEEEEeEEEeeCCCCCCCcEEEEEeCCCCCcCCcceecccCCCCCCc-EE
Q psy8444 135 HLYSHARYGHDNYGKSMDCDWTIEAEPGKNVHLTFLTFDIESNKDCEYDYVEVYSGLDSSVSQASYGRFCGTTVALK-FQ 213 (248)
Q Consensus 135 ~~~~Sp~y~p~~yp~~~~C~w~I~~p~~~~i~l~f~~f~l~~~~~C~~d~l~I~dg~~~~~~~~~~~~~cg~~~p~~-~~ 213 (248)
|.|.||+| |..||++.+|.|.|++|++++|.|+|.+|+|+....|..|+|+|+||.... .+.++++||...|.. ++
T Consensus 1 G~i~Sp~y-P~~y~~~~~C~w~i~~~~g~~i~l~f~~~~l~~~~~C~~d~l~i~~g~~~~--~~~~~~~Cg~~~~~~~~~ 77 (102)
T smart00042 1 GTITSPNY-PQSYPNNLDCVWTIRAPPGYRIELQFTDFDLESSDNCEYDYVEIYDGPSAS--SPLLGRFCGSELPPPVIS 77 (102)
T ss_pred CEEeCCCC-CcCCCCCCcEEEEEECCCCeEEEEEEEEEeccCCCCeeEeEEEEEeCCCCC--CceeEEEecCcCCCCeEE
Confidence 47889999 999999999999999999999999999999999888999999999998743 778899999886654 66
Q ss_pred ecCCEEEEEEeeeeE
Q psy8444 214 SFRDLRIMTSVHMIM 228 (248)
Q Consensus 214 S~~n~~~v~f~s~~~ 228 (248)
|.+|.|.|+|.++..
T Consensus 78 s~~n~~~i~f~s~~~ 92 (102)
T smart00042 78 SSSNSLTVTFVSDSS 92 (102)
T ss_pred cCCCEEEEEEEeCCC
Confidence 669999999998765
No 7
>KOG4292|consensus
Probab=99.79 E-value=1.9e-18 Score=146.91 Aligned_cols=214 Identities=20% Similarity=0.342 Sum_probs=153.9
Q ss_pred CCCCCCCcEEecCc-eEEeCCCCCCCCCCCCcEEEEEEeCCCCeEEEEEEEEEEcCC-CCCcceEEEEEeCCCCCcccee
Q psy8444 5 CKEGGCKYEITAPN-GVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPH-QTCAYDHVVMYDGDSPDSLTLG 82 (248)
Q Consensus 5 C~~~~C~~~~~~~~-G~i~SP~yP~~y~~~~~C~w~I~~~~g~~i~l~f~~f~l~~~-~~C~~d~l~i~dg~~~~~~~~~ 82 (248)
|.. .|+.+++.+. |.+.+|++|..|....-|.|.|.+++++++.|++..+++... ..|...+|.++++..... .
T Consensus 165 ~~~-~~~~t~~~q~sg~~~~~~~p~~~v~s~~c~Wli~t~p~q~l~irv~~~~~~pt~n~c~s~~L~i~m~~~s~~---~ 240 (454)
T KOG4292|consen 165 CGG-TYNITFTTQNSGSIPSPNDPDTYVASSICNWLIDTPPGQRLYIRVVHLHLAPTINECESASLTIFMSYKSEK---Y 240 (454)
T ss_pred CCc-ccceeecCcccccccCCCCcccccccchhhhhhhcCCCcceeEEEEeccCCcccccccceeEEEEeccCCcc---c
Confidence 443 5666776544 999999999999999999999999999999999999988775 469999999998764311 1
Q ss_pred ccccccCCc----------cEEEcCCEEEEEEEeCCCccCCC-eEEEEEcccCCeEEecCCcceeeecCCCCCCCCCCCC
Q psy8444 83 RFCGIKLPY----------PIITGSNQLYMMFKSDASVQRKG-FIATHTTVCGGHLQAQDYKRHLYSHARYGHDNYGKSM 151 (248)
Q Consensus 83 ~~cg~~~p~----------~~~s~~~~l~v~f~s~~~~~~~G-F~~~y~~~C~~~~~~~~~~~~~~~Sp~y~p~~yp~~~ 151 (248)
..++...+. ...+....+.+.+.+.......+ +.-.--..|+++++. ..|.+.||+| |..|+++.
T Consensus 241 ~~~~~~~~~~~~~~as~~~~~~~s~s~s~~i~~S~~~~r~s~~~~~~~~~~C~~~~~~---~~G~~~Sp~y-p~~y~~~l 316 (454)
T KOG4292|consen 241 GGHGNSRPQECGRNASCGSDFYSSMSTSKVIFSSGNLNRRSRTNETYQISDCNRTYHG---KFGNLTSPGY-PQNYPNNL 316 (454)
T ss_pred ccccCcChhhccccccccchhhhhhhhhhhhccccccccccccCCCccccccccceec---ceeEEcCCCC-cccCCCCC
Confidence 222222211 11111112222333322111111 011112349988887 4459999999 99999999
Q ss_pred CceEEEEeCCCCeEEEEEeEEEeeCCCCCCCcEEEEEeCCCCCcCCcceecccCCCCCCcEEecCCEEEEEEeeeeE
Q psy8444 152 DCDWTIEAEPGKNVHLTFLTFDIESNKDCEYDYVEVYSGLDSSVSQASYGRFCGTTVALKFQSFRDLRIMTSVHMIM 228 (248)
Q Consensus 152 ~C~w~I~~p~~~~i~l~f~~f~l~~~~~C~~d~l~I~dg~~~~~~~~~~~~~cg~~~p~~~~S~~n~~~v~f~s~~~ 228 (248)
+|+|++.+|.++.|.|.|..|-++.+..|.+|++....+.... ..+++++|+...+..+.+.++.+.+...++..
T Consensus 317 ~Ct~~l~~~~g~~l~v~fh~~~~~~s~~C~~d~l~~r~~~~~~--~~l~g~~~~~ls~~~~ss~s~g~~l~~~~~~i 391 (454)
T KOG4292|consen 317 DCTTHLTVPGGHTLVVFFHEFSIENSRECINDYLVLRNGNSGN--GPLLGPHGAGLSPELVSSASLGLSLIDLSMGV 391 (454)
T ss_pred cceEEEEcCCCCEEEEEeecccchhhhhhccceEEeccCCCCC--CCccCcccCCCCccccccccccceeeeeceee
Confidence 9999999999999999999999999999999999999988886 88888844455566666677777777666644
No 8
>KOG4586|consensus
Probab=99.75 E-value=6e-18 Score=119.14 Aligned_cols=107 Identities=28% Similarity=0.596 Sum_probs=101.1
Q ss_pred ecCceEEeCCCCCCCCCCCCcEEEEEEeCCCCeEEEEEE-EEEEcCCCCCcceEEEEEeCCCCCccceeccccccCCccE
Q psy8444 15 TAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQ-EFELEPHQTCAYDHVVMYDGDSPDSLTLGRFCGIKLPYPI 93 (248)
Q Consensus 15 ~~~~G~i~SP~yP~~y~~~~~C~w~I~~~~g~~i~l~f~-~f~l~~~~~C~~d~l~i~dg~~~~~~~~~~~cg~~~p~~~ 93 (248)
+...+.++||+||+.|+++..|...|.+.+.+-|.+.|+ .+.+|.+-+|..|.+.|.||.-.-++++.+|||...|+.+
T Consensus 46 ~~n~~Iftspn~ps~ypp~r~cv~vi~~~p~~~ve~~Fde~y~IEps~EC~fD~iEvrDGpfGFSPlI~rfCG~~nPp~I 125 (156)
T KOG4586|consen 46 LQNFNIFTSPNFPSRYPPNRDCVRVIHSRPQHDVEVKFDEVYHIEPSYECPFDFIEVRDGPFGFSPLIARFCGDRNPPEI 125 (156)
T ss_pred ecccceEecCCccccCCCCcceEEeEecccccceEEeeeeeEEecccccCCCCcccccCCCcCccHHHHHHhccCCChhh
Confidence 456689999999999999999999999999999999996 5999999999999999999999999999999999999999
Q ss_pred EEcCCEEEEEEEeCCCccCCCeEEEEEc
Q psy8444 94 ITGSNQLYMMFKSDASVQRKGFIATHTT 121 (248)
Q Consensus 94 ~s~~~~l~v~f~s~~~~~~~GF~~~y~~ 121 (248)
.|.+..|||+|.+|......||.+.|..
T Consensus 126 rs~grFlWIkF~sD~ele~~gfsa~y~~ 153 (156)
T KOG4586|consen 126 RSVGRFLWIKFRSDSELEYQGFSAEYAI 153 (156)
T ss_pred eecCcEEEEEEcccchhhhcccceeeec
Confidence 9999999999999998889999999974
No 9
>KOG4586|consensus
Probab=99.73 E-value=7.6e-18 Score=118.61 Aligned_cols=91 Identities=21% Similarity=0.442 Sum_probs=86.5
Q ss_pred eeeecCCCCCCCCCCCCCceEEEEeCCCCeEEEEEe-EEEeeCCCCCCCcEEEEEeCCCCCcCCcceecccCCCCCCcEE
Q psy8444 135 HLYSHARYGHDNYGKSMDCDWTIEAEPGKNVHLTFL-TFDIESNKDCEYDYVEVYSGLDSSVSQASYGRFCGTTVALKFQ 213 (248)
Q Consensus 135 ~~~~Sp~y~p~~yp~~~~C~w~I~~p~~~~i~l~f~-~f~l~~~~~C~~d~l~I~dg~~~~~~~~~~~~~cg~~~p~~~~ 213 (248)
+|++|||| |+.||++.+|...|++.+-+-|.+.|+ .|.+|++-.|..|.|||.||.-.. ++++++|||...|+.+.
T Consensus 50 ~Iftspn~-ps~ypp~r~cv~vi~~~p~~~ve~~Fde~y~IEps~EC~fD~iEvrDGpfGF--SPlI~rfCG~~nPp~Ir 126 (156)
T KOG4586|consen 50 NIFTSPNF-PSRYPPNRDCVRVIHSRPQHDVEVKFDEVYHIEPSYECPFDFIEVRDGPFGF--SPLIARFCGDRNPPEIR 126 (156)
T ss_pred ceEecCCc-cccCCCCcceEEeEecccccceEEeeeeeEEecccccCCCCcccccCCCcCc--cHHHHHHhccCCChhhe
Confidence 49999999 999999999999999999999999998 578999999999999999999997 99999999999999999
Q ss_pred ecCCEEEEEEeeeeE
Q psy8444 214 SFRDLRIMTSVHMIM 228 (248)
Q Consensus 214 S~~n~~~v~f~s~~~ 228 (248)
|++.-|||+|.||..
T Consensus 127 s~grFlWIkF~sD~e 141 (156)
T KOG4586|consen 127 SVGRFLWIKFRSDSE 141 (156)
T ss_pred ecCcEEEEEEcccch
Confidence 999999999999954
No 10
>KOG4292|consensus
Probab=99.43 E-value=5.5e-13 Score=113.92 Aligned_cols=156 Identities=23% Similarity=0.375 Sum_probs=114.2
Q ss_pred CCCCcEEecCceEEeCCCCCCCCCCCCcEEEEEEeCCCCeEEEEEEEEEEcCCCCCcceEEEEEeCCCCCccceeccccc
Q psy8444 8 GGCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVVMYDGDSPDSLTLGRFCGI 87 (248)
Q Consensus 8 ~~C~~~~~~~~G~i~SP~yP~~y~~~~~C~w~I~~~~g~~i~l~f~~f~l~~~~~C~~d~l~i~dg~~~~~~~~~~~cg~ 87 (248)
..|+.++....|++.||+||..|+++.+|+|++.++.++.+.+.|..+.++.+..|.+|++....++.......+. |+.
T Consensus 290 ~~C~~~~~~~~G~~~Sp~yp~~y~~~l~Ct~~l~~~~g~~l~v~fh~~~~~~s~~C~~d~l~~r~~~~~~~~l~g~-~~~ 368 (454)
T KOG4292|consen 290 SDCNRTYHGKFGNLTSPGYPQNYPNNLDCTTHLTVPGGHTLVVFFHEFSIENSRECINDYLVLRNGNSGNGPLLGP-HGA 368 (454)
T ss_pred cccccceecceeEEcCCCCcccCCCCCcceEEEEcCCCCEEEEEeecccchhhhhhccceEEeccCCCCCCCccCc-ccC
Confidence 6799999999999999999999999999999999999999999999999999999999999998888877777777 444
Q ss_pred cCCccEE-EcCCEEEEEEEeCC-CccCCCeEEEEEc---ccCCeEEecCCcceeeecCCCCCCCCCCCCCceEEEEeCCC
Q psy8444 88 KLPYPII-TGSNQLYMMFKSDA-SVQRKGFIATHTT---VCGGHLQAQDYKRHLYSHARYGHDNYGKSMDCDWTIEAEPG 162 (248)
Q Consensus 88 ~~p~~~~-s~~~~l~v~f~s~~-~~~~~GF~~~y~~---~C~~~~~~~~~~~~~~~Sp~y~p~~yp~~~~C~w~I~~p~~ 162 (248)
..++.++ +.++.+.+...+.. ......|...... .+++......+ ....++| +..+|+..+|.|....+..
T Consensus 369 ~ls~~~~ss~s~g~~l~~~~~~i~~~~~~~~~~~~~~~e~~~~~s~~~~g---~~~~~g~-~~~~pn~~dc~~~~~d~~~ 444 (454)
T KOG4292|consen 369 GLSPELVSSASLGLSLIDLSMGVVVGEDSFRILPRNPTELPGGPSASENG---KGKNMGY-NSITPNRDDCDDLELDEDQ 444 (454)
T ss_pred CCCccccccccccceeeeeceeeEeecccccccccCcccCCCCccccccC---CCCCCCC-cccCCCcccccceeccccc
Confidence 4444444 44444444444442 2233344333221 24443333333 3457899 8999999999999988876
Q ss_pred CeEEEE
Q psy8444 163 KNVHLT 168 (248)
Q Consensus 163 ~~i~l~ 168 (248)
..+.+-
T Consensus 445 ~~~~i~ 450 (454)
T KOG4292|consen 445 LDADIP 450 (454)
T ss_pred cccCCC
Confidence 654443
No 11
>PF05428 CRF-BP: Corticotropin-releasing factor binding protein (CRF-BP); InterPro: IPR008435 This family consists of several eukaryotic corticotropin-releasing factor binding proteins (CRF-BP or CRH-BP). Corticotropin-releasing hormone (CRH) plays multiple roles in vertebrate species. In mammals, it is the major hypothalamic releasing factor for pituitary adrenocorticotropin secretion, and is a neurotransmitter or neuromodulator at other sites in the central nervous system. In non-mammalian vertebrates, CRH not only acts as a neurotransmitter and hypophysiotropin, it also acts as a potent thyrotropin-releasing factor, allowing CRH to regulate both the adrenal and thyroid axes, especially in development. CRH-BP is thought to play an inhibitory role in which it binds CRH and other CRH-like ligands and prevents the activation of CRH receptors. There is however evidence that CRH-BP may also exhibit diverse extra and intracellular roles in a cell specific fashion and at specific times in development [].
Probab=98.55 E-value=4e-05 Score=62.64 Aligned_cols=171 Identities=18% Similarity=0.352 Sum_probs=115.2
Q ss_pred ecCceEEeCCCCCCCCCCCCcEEEEEEeCCCCeEEEEEEEEEEcCCCCCc-ceEEEEEeCCCC--------C------cc
Q psy8444 15 TAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCA-YDHVVMYDGDSP--------D------SL 79 (248)
Q Consensus 15 ~~~~G~i~SP~yP~~y~~~~~C~w~I~~~~g~~i~l~f~~f~l~~~~~C~-~d~l~i~dg~~~--------~------~~ 79 (248)
.+..|.++ |-.. .++..|--.+-+-|++.|.|.|+.+++. |. .|.+.++||=.- . ..
T Consensus 64 ~s~~G~f~---f~a~-~pq~~Ca~y~iaePd~~IeI~~~~vdid----C~~G~ll~v~DGW~LnGe~FPs~~DHplpl~e 135 (311)
T PF05428_consen 64 LSEEGQFT---FTAS-RPQLVCAAYFIAEPDELIEIEFDHVDID----CEGGDLLKVFDGWELNGEKFPSSQDHPLPLEE 135 (311)
T ss_pred eccCceEE---EecC-CCCceeEEEEEeCCCeEEEEEEEEeecc----CCCCCEEEEEeceEECccCCcCcccCCCchHH
Confidence 45556665 3222 5578999999999999999999999997 45 789999987221 1 11
Q ss_pred ceeccccccCCc-cEEEcCCEEEEEEEeCCCccCCCeEEEEEcc-----cCCeEEecCCcceeeecCCCCCCCCCCCCCc
Q psy8444 80 TLGRFCGIKLPY-PIITGSNQLYMMFKSDASVQRKGFIATHTTV-----CGGHLQAQDYKRHLYSHARYGHDNYGKSMDC 153 (248)
Q Consensus 80 ~~~~~cg~~~p~-~~~s~~~~l~v~f~s~~~~~~~GF~~~y~~~-----C~~~~~~~~~~~~~~~Sp~y~p~~yp~~~~C 153 (248)
....||+..... .+.|+.|.+.|.|.-.. .++||.++.... |+-.....++ .++ =.+|....+|
T Consensus 136 R~~efC~~~~~~~~~rSSQNvAmi~fRip~--~GsgFt~~vR~~~Np~PCNVisq~~~g---~fT-----l~n~gq~rNC 205 (311)
T PF05428_consen 136 RYTEFCDSGPNRRSFRSSQNVAMIQFRIPS--PGSGFTLTVRFIKNPFPCNVISQSPEG---RFT-----LRNPGQRRNC 205 (311)
T ss_pred HHHHhccCCCCcceeEeccceEEEEEEecC--CCCceEEEEEeCCCCCCceEeccCCCc---ceE-----EECCCcccCc
Confidence 224689986553 68899999999998764 557888887653 7754443333 333 2334567889
Q ss_pred eEEEEeCCCCeEEEEEeEEEeeC----------CCCCCC--cEEEEEeCCCCCcCC--cceecccCCCC
Q psy8444 154 DWTIEAEPGKNVHLTFLTFDIES----------NKDCEY--DYVEVYSGLDSSVSQ--ASYGRFCGTTV 208 (248)
Q Consensus 154 ~w~I~~p~~~~i~l~f~~f~l~~----------~~~C~~--d~l~I~dg~~~~~~~--~~~~~~cg~~~ 208 (248)
+..|.-| +.++..++.|.. ...|.. |+|+|-.|...+ .+ ..+..+||...
T Consensus 206 Sfs~iyP----~~i~i~~L~lG~~~~l~~~~~~~~~C~~~~D~Vei~Gg~GlD-~skM~~~~~lCg~~~ 269 (311)
T PF05428_consen 206 SFSIIYP----VVISISDLSLGHTNGLELQRGVIHGCQGSGDFVEIGGGNGLD-TSKMFPVADLCGSFS 269 (311)
T ss_pred EEEEEee----eEEEEEEEecccccCcccccccccCCCCcCCeEEECCcCCcC-cccCEEhhHhhccCC
Confidence 9999877 344555555543 356773 999999865433 22 33468888643
No 12
>PF05428 CRF-BP: Corticotropin-releasing factor binding protein (CRF-BP); InterPro: IPR008435 This family consists of several eukaryotic corticotropin-releasing factor binding proteins (CRF-BP or CRH-BP). Corticotropin-releasing hormone (CRH) plays multiple roles in vertebrate species. In mammals, it is the major hypothalamic releasing factor for pituitary adrenocorticotropin secretion, and is a neurotransmitter or neuromodulator at other sites in the central nervous system. In non-mammalian vertebrates, CRH not only acts as a neurotransmitter and hypophysiotropin, it also acts as a potent thyrotropin-releasing factor, allowing CRH to regulate both the adrenal and thyroid axes, especially in development. CRH-BP is thought to play an inhibitory role in which it binds CRH and other CRH-like ligands and prevents the activation of CRH receptors. There is however evidence that CRH-BP may also exhibit diverse extra and intracellular roles in a cell specific fashion and at specific times in development [].
Probab=96.74 E-value=0.0067 Score=49.93 Aligned_cols=73 Identities=23% Similarity=0.464 Sum_probs=57.3
Q ss_pred CCCCCceEEEEeCCCCeEEEEEeEEEeeCCCCCC-CcEEEEEeCCCCC--------c----CCcceecccCCCCCC-cEE
Q psy8444 148 GKSMDCDWTIEAEPGKNVHLTFLTFDIESNKDCE-YDYVEVYSGLDSS--------V----SQASYGRFCGTTVAL-KFQ 213 (248)
Q Consensus 148 p~~~~C~w~I~~p~~~~i~l~f~~f~l~~~~~C~-~d~l~I~dg~~~~--------~----~~~~~~~~cg~~~p~-~~~ 213 (248)
.+...|--.+.+.+++.|.|+|..+++. |. .|.|.|+||+..+ | -......||++.... .+.
T Consensus 76 ~pq~~Ca~y~iaePd~~IeI~~~~vdid----C~~G~ll~v~DGW~LnGe~FPs~~DHplpl~eR~~efC~~~~~~~~~r 151 (311)
T PF05428_consen 76 RPQLVCAAYFIAEPDELIEIEFDHVDID----CEGGDLLKVFDGWELNGEKFPSSQDHPLPLEERYTEFCDSGPNRRSFR 151 (311)
T ss_pred CCCceeEEEEEeCCCeEEEEEEEEeecc----CCCCCEEEEEeceEECccCCcCcccCCCchHHHHHHhccCCCCcceeE
Confidence 3578899999999999999999999984 44 4999999997544 2 123346899985544 589
Q ss_pred ecCCEEEEEEe
Q psy8444 214 SFRDLRIMTSV 224 (248)
Q Consensus 214 S~~n~~~v~f~ 224 (248)
|+.|..+|+|-
T Consensus 152 SSQNvAmi~fR 162 (311)
T PF05428_consen 152 SSQNVAMIQFR 162 (311)
T ss_pred eccceEEEEEE
Confidence 99999999885
No 13
>PF02408 CUB_2: CUB-like domain; InterPro: IPR003366 This domain is found in a family of hypothetical Caenorhabditis elegans proteins. The aligned region has no known function nor do any of the proteins which possess it. However, this domain is related to the CUB domain (IPR000859 from INTERPRO). The aligned region is approximately 130 amino acids long and contains two conserved cysteine residues.
Probab=96.24 E-value=0.078 Score=38.35 Aligned_cols=81 Identities=12% Similarity=0.261 Sum_probs=49.4
Q ss_pred CCCCCCcEEEEEEeCCCCeEEEEEEEEEEcCCCCCcceEEEEEeCCCCCccceeccccccCCccEEEcCCEEEEEEEeCC
Q psy8444 29 YYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVVMYDGDSPDSLTLGRFCGIKLPYPIITGSNQLYMMFKSDA 108 (248)
Q Consensus 29 ~y~~~~~C~w~I~~~~g~~i~l~f~~f~l~~~~~C~~d~l~i~dg~~~~~~~~~~~cg~~~p~~~~s~~~~l~v~f~s~~ 108 (248)
.+|.+.+|.|.|.+|.|..++|.+.. ++.. .|.+.|.|..+..... ..... ..+........|.+.+..
T Consensus 37 ~~p~n~~C~y~i~iP~G~~a~v~~~~-~~~~-----~d~i~v~D~~g~~~~~---~~~~~--~~~~~~~p~~~i~v~t~t 105 (120)
T PF02408_consen 37 QFPANQNCTYQINIPKGYYAKVTLSA-NLND-----NDSITVTDSNGKSEYI---TSSDN--EPFYFVAPGFSIQVQTVT 105 (120)
T ss_pred ccCCCCceEEEEEcCCceEEEEEEEE-ecCC-----CCEEEEEecCCCEEEe---ecCCC--cEEEEeCCCeEEEEEECC
Confidence 46788999999999999999998753 3322 6899999976542111 11112 233444444556666554
Q ss_pred CccCCCeEEEEE
Q psy8444 109 SVQRKGFIATHT 120 (248)
Q Consensus 109 ~~~~~GF~~~y~ 120 (248)
....-+|...|.
T Consensus 106 ~~~~F~f~v~w~ 117 (120)
T PF02408_consen 106 GNSQFGFKVQWQ 117 (120)
T ss_pred CCcEEEEEEEEE
Confidence 443445555553
No 14
>PF02408 CUB_2: CUB-like domain; InterPro: IPR003366 This domain is found in a family of hypothetical Caenorhabditis elegans proteins. The aligned region has no known function nor do any of the proteins which possess it. However, this domain is related to the CUB domain (IPR000859 from INTERPRO). The aligned region is approximately 130 amino acids long and contains two conserved cysteine residues.
Probab=95.94 E-value=0.087 Score=38.09 Aligned_cols=72 Identities=13% Similarity=0.088 Sum_probs=45.8
Q ss_pred CCCCCCCCceEEEEeCCCCeEEEEEeEEEeeCCCCCCCcEEEEEeCCCCCcCCcceecccCCCCCCcEEecCCEEEEEEe
Q psy8444 145 DNYGKSMDCDWTIEAEPGKNVHLTFLTFDIESNKDCEYDYVEVYSGLDSSVSQASYGRFCGTTVALKFQSFRDLRIMTSV 224 (248)
Q Consensus 145 ~~yp~~~~C~w~I~~p~~~~i~l~f~~f~l~~~~~C~~d~l~I~dg~~~~~~~~~~~~~cg~~~p~~~~S~~n~~~v~f~ 224 (248)
..+|.+.+|.|.|.+|.|..++|.+..- +.. .|.|.|.|..... ....-....+..+++.+-.+.|.-.
T Consensus 36 ~~~p~n~~C~y~i~iP~G~~a~v~~~~~-~~~-----~d~i~v~D~~g~~-----~~~~~~~~~~~~~~~p~~~i~v~t~ 104 (120)
T PF02408_consen 36 PQFPANQNCTYQINIPKGYYAKVTLSAN-LND-----NDSITVTDSNGKS-----EYITSSDNEPFYFVAPGFSIQVQTV 104 (120)
T ss_pred cccCCCCceEEEEEcCCceEEEEEEEEe-cCC-----CCEEEEEecCCCE-----EEeecCCCcEEEEeCCCeEEEEEEC
Confidence 4578999999999999999888876532 222 3999999964331 1222223444455555555666544
Q ss_pred eee
Q psy8444 225 HMI 227 (248)
Q Consensus 225 s~~ 227 (248)
+..
T Consensus 105 t~~ 107 (120)
T PF02408_consen 105 TGN 107 (120)
T ss_pred CCC
Confidence 443
No 15
>PF08248 Tryp_FSAP: Tryptophyllin-3 skin active peptide; InterPro: IPR013266 PdT-3 or Tryptophyllin-3 peptide is a subfamily of the family Tryptophyllin and of the superfamily FSAP (Frog Skin Active Peptide). Originally identified in skin extracts of Neotropical leaf frogs, Phyllomedusa sp. This subfamily has an average length of 13 amino acids. The pharmacological activity of the tryptophyllins remains to be established [] but it seems that these peptides possess an action on liver protein synthesis and body weight []. It is thought to possesses insulin-releasing activity [].
Probab=22.92 E-value=55 Score=13.14 Aligned_cols=9 Identities=11% Similarity=0.047 Sum_probs=4.4
Q ss_pred CCCCCCCCC
Q psy8444 140 ARYGHDNYG 148 (248)
Q Consensus 140 p~y~p~~yp 148 (248)
|.|+|..||
T Consensus 3 pfw~ppiyp 11 (12)
T PF08248_consen 3 PFWPPPIYP 11 (12)
T ss_pred ccCCCCccc
Confidence 445444454
No 16
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=22.00 E-value=2.7e+02 Score=18.97 Aligned_cols=68 Identities=19% Similarity=0.058 Sum_probs=33.5
Q ss_pred EEEEeCCCCeEEEEEeEEEeeCCCCCCCcEEEEEeCCCCCcCCcceecccCCCCCCcEEecCCEEEEEEeeeeEEEEeeC
Q psy8444 155 WTIEAEPGKNVHLTFLTFDIESNKDCEYDYVEVYSGLDSSVSQASYGRFCGTTVALKFQSFRDLRIMTSVHMIMLRLEMG 234 (248)
Q Consensus 155 w~I~~p~~~~i~l~f~~f~l~~~~~C~~d~l~I~dg~~~~~~~~~~~~~cg~~~p~~~~S~~n~~~v~f~s~~~~~~~~~ 234 (248)
-.|+++.|..+.|.|.+-+-.. --+.|.+... ...+-.+....++|...-...|++.
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~~------h~~~i~~~~~-----------------~~~l~~g~~~~~~f~~~~~G~y~~~ 91 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSRP------HEFVIPDLGI-----------------SKVLPPGETATVTFTPLKPGEYEFY 91 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS-------EEEEEGGGTE-----------------EEEE-TT-EEEEEEEE-S-EEEEEB
T ss_pred CEEEEcCCCeEEEEEEECCCCc------EEEEECCCce-----------------EEEECCCCEEEEEEcCCCCEEEEEE
Confidence 3788889998888887664433 2233333100 0234455667788877777777765
Q ss_pred CCCCccccccc
Q psy8444 235 MPPDSPIIGNL 245 (248)
Q Consensus 235 ~~~~~~~~~~~ 245 (248)
=.-...|.|.+
T Consensus 92 C~~~~~m~G~l 102 (104)
T PF13473_consen 92 CTMHPNMKGTL 102 (104)
T ss_dssp -SSS-TTB---
T ss_pred cCCCCcceecc
Confidence 44333356654
No 17
>KOG0281|consensus
Probab=20.71 E-value=1.2e+02 Score=26.40 Aligned_cols=45 Identities=24% Similarity=0.320 Sum_probs=33.9
Q ss_pred CCCCCceEEEEeCCCCeEEEEEeEEEeeCCCCCCCcEEEEEeCCCCC
Q psy8444 148 GKSMDCDWTIEAEPGKNVHLTFLTFDIESNKDCEYDYVEVYSGLDSS 194 (248)
Q Consensus 148 p~~~~C~w~I~~p~~~~i~l~f~~f~l~~~~~C~~d~l~I~dg~~~~ 194 (248)
|.+.-|.-++.-..|.+..|+|.+|++-..+ ..|-+-|+|-.+..
T Consensus 436 ~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsss--HddtILiWdFl~~~ 480 (499)
T KOG0281|consen 436 PASTLCLRTLVEHSGRVFRLQFDEFQIISSS--HDDTILIWDFLNGP 480 (499)
T ss_pred cccchHHHhhhhccceeEEEeecceEEEecc--CCCeEEEEEcCCCC
Confidence 4556677777777888999999999997632 13889999965543
Done!