Query psy8444
Match_columns 248
No_of_seqs 151 out of 1621
Neff 9.5
Searched_HMMs 29240
Date Fri Aug 16 19:00:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8444.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8444hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gz9_A Neuropilin-1, A5 protei 100.0 1.9E-47 6.5E-52 346.2 21.4 217 3-228 4-234 (577)
2 3kq4_B Cubilin; protein-protei 100.0 1.9E-46 6.4E-51 332.1 23.9 213 8-228 232-444 (457)
3 1nt0_A MAsp2, mannose-binding 100.0 1.1E-45 3.8E-50 308.3 21.0 203 13-228 3-264 (286)
4 3kq4_B Cubilin; protein-protei 100.0 1.3E-45 4.5E-50 326.6 20.0 215 8-228 115-333 (457)
5 2qqk_A Neuropilin-2; VEGF rece 100.0 8.9E-45 3E-49 329.7 24.0 214 8-228 4-232 (579)
6 3dem_A Complement factor MAsp- 100.0 1.1E-44 3.6E-49 301.4 22.4 207 11-228 2-265 (278)
7 4aqb_A Mannan-binding lectin s 100.0 2.5E-42 8.6E-47 297.1 21.0 205 13-228 4-265 (361)
8 2wno_A Tumor necrosis factor-i 99.9 4.9E-27 1.7E-31 176.9 15.8 117 7-123 4-120 (149)
9 3poj_A Mannan-binding lectin s 99.9 5.9E-26 2E-30 163.8 11.6 110 8-121 2-115 (115)
10 2wno_A Tumor necrosis factor-i 99.9 1.2E-25 4E-30 169.4 11.4 102 121-228 5-106 (149)
11 2qqo_A Neuropilin-2; VEGF rece 99.9 1.4E-23 4.7E-28 185.6 23.1 115 8-122 6-126 (460)
12 2qqm_A Neuropilin-1; VEGF rece 99.9 6.9E-24 2.4E-28 187.1 19.6 115 8-122 9-129 (450)
13 1spp_B Major seminal plasma gl 99.9 2.4E-23 8.1E-28 150.3 12.9 104 8-122 7-110 (116)
14 1spp_A Major seminal plasma gl 99.9 3E-23 1E-27 148.0 13.0 103 8-122 4-106 (109)
15 3poj_A Mannan-binding lectin s 99.9 4.1E-24 1.4E-28 154.1 7.8 98 122-228 3-103 (115)
16 1sfp_A ASFP; spermadhesin, bov 99.9 7.2E-23 2.5E-27 147.3 13.6 105 7-122 7-111 (114)
17 1szb_A Mannose binding lectin- 99.9 1.4E-22 4.7E-27 156.0 13.4 107 11-121 5-121 (170)
18 1nzi_A Complement C1S componen 99.9 8.1E-23 2.8E-27 155.7 11.4 103 15-121 2-114 (159)
19 1nt0_A MAsp2, mannose-binding 99.9 1.6E-22 5.6E-27 168.2 12.3 116 3-123 159-278 (286)
20 3dem_A Complement factor MAsp- 99.9 3.2E-22 1.1E-26 165.8 11.7 114 3-121 160-277 (278)
21 1szb_A Mannose binding lectin- 99.9 4E-22 1.4E-26 153.5 11.0 89 133-228 11-107 (170)
22 1nzi_A Complement C1S componen 99.9 1.8E-22 6.2E-27 153.7 8.6 89 133-228 4-100 (159)
23 4gz9_A Neuropilin-1, A5 protei 99.9 1.1E-21 3.7E-26 177.7 13.7 115 8-122 127-247 (577)
24 2qqk_A Neuropilin-2; VEGF rece 99.9 3.2E-20 1.1E-24 168.5 22.5 115 8-122 125-245 (579)
25 2qqm_A Neuropilin-1; VEGF rece 99.9 4.4E-22 1.5E-26 175.5 8.9 103 120-228 8-116 (450)
26 2qqo_A Neuropilin-2; VEGF rece 99.8 3.1E-21 1E-25 170.6 11.3 101 122-228 7-113 (460)
27 4aqb_A Mannan-binding lectin s 99.8 1.6E-20 5.5E-25 161.2 14.9 152 3-166 160-317 (361)
28 1spp_B Major seminal plasma gl 99.8 2.3E-21 7.8E-26 139.8 7.9 90 122-228 8-97 (116)
29 1spp_A Major seminal plasma gl 99.8 2.7E-21 9.2E-26 137.9 7.7 90 121-228 4-93 (109)
30 1sfp_A ASFP; spermadhesin, bov 99.8 4.9E-21 1.7E-25 137.7 8.3 91 121-228 8-98 (114)
No 1
>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H
Probab=100.00 E-value=1.9e-47 Score=346.20 Aligned_cols=217 Identities=25% Similarity=0.536 Sum_probs=196.1
Q ss_pred CCCCCCCCCcEEecC-ceEEeCCCCCCCCCCCCcEEEEEEeCCC-CeEEEEEE-EEEEcCCCCCcceEEEEEeCCCCCcc
Q psy8444 3 HDCKEGGCKYEITAP-NGVIKTPNHPDYYPSKRECIWHFTTTPG-HRIKLVFQ-EFELEPHQTCAYDHVVMYDGDSPDSL 79 (248)
Q Consensus 3 ~~C~~~~C~~~~~~~-~G~i~SP~yP~~y~~~~~C~w~I~~~~g-~~i~l~f~-~f~l~~~~~C~~d~l~i~dg~~~~~~ 79 (248)
..|. .||+.++.. +|.|+||+||..||++..|.|.|++|.+ ++|+|.|. .|+|+. .+|.+|||.|+||....++
T Consensus 4 ~~~~--~CGg~l~~~~~G~i~SPnyP~~Yp~n~~C~W~I~~p~~~~~I~L~F~~~f~le~-~~C~~Dyl~I~dG~~~~~~ 80 (577)
T 4gz9_A 4 FRSD--KCGGTIKIENPGYLTSPGYPHSYHPSEKCEWLIQAPEPYQRIMINFNPHFDLED-RDCKYDYVEVIDGENEGGR 80 (577)
T ss_dssp ---C--CSSEEEECSSCEEEECTTTTTCCCSSCEEEEEEECSSTTCCEEEEECSCCBCCC-GGGTSSEEEEEESSSTTSE
T ss_pred cccC--CCCCEEEcCCCEEEeCCCCCCCCCCCCeEEEEEEECCCCcEEEEEEEeeeeecC-CCCCccEEEEEeCCCCCCc
Confidence 3454 799999865 5999999999999999999999999865 78999997 799985 5799999999999988888
Q ss_pred ceeccccccCCccEEEcCCEEEEEEEeCCCccCCCeEEEEEcc-----cCCeEEecCCcceeeecCCCCCCCCCCCCCce
Q psy8444 80 TLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATHTTV-----CGGHLQAQDYKRHLYSHARYGHDNYGKSMDCD 154 (248)
Q Consensus 80 ~~~~~cg~~~p~~~~s~~~~l~v~f~s~~~~~~~GF~~~y~~~-----C~~~~~~~~~~~~~~~Sp~y~p~~yp~~~~C~ 154 (248)
+++++||...|..++|+++.|+|+|+||....++||.+.|++. |++.+... .|.|+||+| |..||++.+|.
T Consensus 81 ~lg~~CG~~~p~~i~S~~n~l~v~F~SD~s~~~~GF~a~y~~~~~~~~C~~~~~~~---~G~i~SPny-P~~Yp~n~~C~ 156 (577)
T 4gz9_A 81 LWGKFCGKIAPSPVVSSGPFLFIKFVSDYETHGAGFSIRYEIFKRGPECSQNYTAP---TGVIKSPGF-PEKYPNSLECT 156 (577)
T ss_dssp EEEEECSSSCCCCEECSSSEEEEEEECCSSCCCCBCEEEEEECCCCCEEEEEECSS---EEEEECTTT-TSCCCSSCEEE
T ss_pred EEEEecCCCCCCCEEEeCCeEEEEEEECCCCCCCCeEEEEEEeecCcccceeecCC---CccccCCCC-CCCCCCCceEE
Confidence 9999999999999999999999999999999999999999874 77776654 459999999 99999999999
Q ss_pred EEEEeCCCCeEEEEEeEEEeeCCC------CCCCcEEEEEeCCCCCcCCcceecccCCCCCCcEEecCCEEEEEEeeeeE
Q psy8444 155 WTIEAEPGKNVHLTFLTFDIESNK------DCEYDYVEVYSGLDSSVSQASYGRFCGTTVALKFQSFRDLRIMTSVHMIM 228 (248)
Q Consensus 155 w~I~~p~~~~i~l~f~~f~l~~~~------~C~~d~l~I~dg~~~~~~~~~~~~~cg~~~p~~~~S~~n~~~v~f~s~~~ 228 (248)
|.|.+|+|++|.|+|.+|+||.+. .|.+|||+||||.+.. ++++++|||...|..++|++|.|+|+|.||.+
T Consensus 157 W~I~~p~g~~I~L~F~~F~lE~~~~~~~~~~C~~D~l~I~dG~~~~--~~~lg~~CG~~~P~~i~S~~n~l~i~F~SD~s 234 (577)
T 4gz9_A 157 YIIFAPKMSEIILEFESFDLEQDSNPPGGMFCRYDRLEIWDGFPEV--GPHIGRYCGQKTPGRIRSSSGVLSMVFYTDSA 234 (577)
T ss_dssp EEEECGGGCCEEEEEEEEECCCCCSCSTTCCCCSSEEEEESSSTTT--SCEEEEECSSSCCCCEEECSSEEEEEEECCSS
T ss_pred EEEEECCCCEEEEEEEEEEeeecCCCCCCCccCccEEEEEcCCCCC--CceeEEEeCCCCCCCcceeCCEEEEEEEECCC
Confidence 999999999999999999999753 4999999999998876 88999999999999999999999999999876
No 2
>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens}
Probab=100.00 E-value=1.9e-46 Score=332.11 Aligned_cols=213 Identities=29% Similarity=0.604 Sum_probs=200.7
Q ss_pred CCCCcEEecCceEEeCCCCCCCCCCCCcEEEEEEeCCCCeEEEEEEEEEEcCCCCCcceEEEEEeCCCCCccceeccccc
Q psy8444 8 GGCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVVMYDGDSPDSLTLGRFCGI 87 (248)
Q Consensus 8 ~~C~~~~~~~~G~i~SP~yP~~y~~~~~C~w~I~~~~g~~i~l~f~~f~l~~~~~C~~d~l~i~dg~~~~~~~~~~~cg~ 87 (248)
..|++.++..+|.|+||+||..|+++..|.|.|+++++++|+|.|..|+|+....|.+|+|.|+||....++.++++||.
T Consensus 232 ~~Cg~~~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~~~~i~l~f~~f~le~~~~C~~D~l~i~dg~~~~~~~l~~~CG~ 311 (457)
T 3kq4_B 232 TGCGGNLTTSSGTFISPNYPMPYYHSSECYWWLKSSHGSAFELEFKDFHLEHHPNCTLDYLAVYDGPSSNSHLLTQLCGD 311 (457)
T ss_dssp CCCEECCCSSEEEEECTTTTSCCCSSCEEEEEECCSTTCCEEEEEEECCCCCCTTCCSSEEEEEESSSTTSEEEEEECSS
T ss_pred CCCCCeEccCcceeccCCCCCCCCCCCEEEEEEEeCCCCEEEEEEEeeeecCCCCcCCCEEEEEeCCCCCchhhhhhcCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999998888889999999
Q ss_pred cCCccEEEcCCEEEEEEEeCCCccCCCeEEEEEcccCCeEEecCCcceeeecCCCCCCCCCCCCCceEEEEeCCCCeEEE
Q psy8444 88 KLPYPIITGSNQLYMMFKSDASVQRKGFIATHTTVCGGHLQAQDYKRHLYSHARYGHDNYGKSMDCDWTIEAEPGKNVHL 167 (248)
Q Consensus 88 ~~p~~~~s~~~~l~v~f~s~~~~~~~GF~~~y~~~C~~~~~~~~~~~~~~~Sp~y~p~~yp~~~~C~w~I~~p~~~~i~l 167 (248)
..|..+.|+++.|+|+|+++.....+||.|.|.+.|++.+.... ..|+|.||+| |..||++.+|.|+|++|+|++|+|
T Consensus 312 ~~p~~i~S~~n~l~v~f~sd~~~~~~GF~a~y~~~C~~~~~~~~-~~G~i~Sp~y-P~~Yp~~~~C~w~i~~~~g~~i~l 389 (457)
T 3kq4_B 312 EKPPLIRSSGDSMFIKLRTDEGQQGRGFKAEYRQTCENVVIVNQ-TYGILESIGY-PNPYSENQHCNWTIRATTGNTVNY 389 (457)
T ss_dssp CCCCCEECSSSCEEEEEECCSSCCCCCCEEEEEECCTTEEECSC-SSEEEECTTT-TSCCCSSCEEEEEEECSTTCCCEE
T ss_pred cCCCCEEecCCEEEEEEEeCCcccCCeEEEEEEeecCCcccccc-eeeEEecCCC-CccCCCCCceEEEEEcCCCCEEEE
Confidence 99999999999999999999999999999999999999987654 3468999999 999999999999999999999999
Q ss_pred EEeEEEeeCCCCCCCcEEEEEeCCCCCcCCcceecccCCCCCCcEEecCCEEEEEEeeeeE
Q psy8444 168 TFLTFDIESNKDCEYDYVEVYSGLDSSVSQASYGRFCGTTVALKFQSFRDLRIMTSVHMIM 228 (248)
Q Consensus 168 ~f~~f~l~~~~~C~~d~l~I~dg~~~~~~~~~~~~~cg~~~p~~~~S~~n~~~v~f~s~~~ 228 (248)
+|.+|+||.+..|.+|||+||||.+ .+++|||...|..++|+++.|+|+|.+|.+
T Consensus 390 ~f~~f~le~~~~C~~D~l~i~dg~~------~~~~~CG~~~p~~~~s~~~~l~v~F~sd~~ 444 (457)
T 3kq4_B 390 TFLAFDLEHHINCSTDYLELYDGPR------QMGRYCGVDLPPPGSTTSSKLQVLLLTDGV 444 (457)
T ss_dssp EEEEEECCCCTTTTSSEEEEEETTE------EEEEECTTCCCCCEECSSSEEEEEEECCSC
T ss_pred EEeEEEEccCCCCCceEEEEEeCCc------cceeecCCCCCCCEEeeCCEEEEEEEECCC
Confidence 9999999999999999999999842 289999999999999999999999999864
No 3
>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1
Probab=100.00 E-value=1.1e-45 Score=308.32 Aligned_cols=203 Identities=28% Similarity=0.540 Sum_probs=174.7
Q ss_pred EEecCceEEeCCCCCCCCCCCCcEEEEEEeCCCCeEEEEEEEEEEcCCCCCcceEEEEEeCCCCCccceecccccc----
Q psy8444 13 EITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVVMYDGDSPDSLTLGRFCGIK---- 88 (248)
Q Consensus 13 ~~~~~~G~i~SP~yP~~y~~~~~C~w~I~~~~g~~i~l~f~~f~l~~~~~C~~d~l~i~dg~~~~~~~~~~~cg~~---- 88 (248)
.++..+|.|+||+||..|+++..|.|.|++++|++|+|.|..|+|+....|.+|+|.|+||. ..++++||..
T Consensus 3 ~l~~~~G~i~SP~yP~~Yp~~~~C~w~I~~p~g~~I~L~F~~f~le~~~~C~~D~l~I~dg~----~~~~~~CG~~~~~~ 78 (286)
T 1nt0_A 3 WPEPVFGRLVSPGFPEKYGNHQDRSWTLTAPPGFRLRLYFTHFNLELSYRCEYDFVKLTSGT----KVLATLCGQESTDT 78 (286)
T ss_dssp --CCCEEEEECTTTTSCCCSSCCEEEEEECCTTEEEEEEEEEEECCCCGGGCSSEEEEEETT----EEEEEECSSSCCSS
T ss_pred cccCCCceEeCCCCCccCcCCCcEEEEEEcCCCCEEEEEEEEEEecCCCCCCCcEEEEECCC----eEeceECCCcCCCc
Confidence 57788999999999999999999999999999999999999999999888999999999985 4688999986
Q ss_pred --CC--ccEEEcCCEEEEEEEeCCCccC--CCeEEEEEcc----------------------------------------
Q psy8444 89 --LP--YPIITGSNQLYMMFKSDASVQR--KGFIATHTTV---------------------------------------- 122 (248)
Q Consensus 89 --~p--~~~~s~~~~l~v~f~s~~~~~~--~GF~~~y~~~---------------------------------------- 122 (248)
.| ..++|+++.|+|+|+++..... .||.+.|.+.
T Consensus 79 ~~~P~~~~~~S~~n~l~v~F~Sd~s~~~~~~GF~a~y~~~~~~~C~~~~~~~~~c~~~C~n~~g~~~csC~~Gy~L~~d~ 158 (286)
T 1nt0_A 79 ERAPGNDTFYSLGPSLKVTFHSDYSNEKPFTGFEAFYAAEDVDECRTSLGDSVPCDHYCHXYLGGYYCSCRVGYILHQNK 158 (286)
T ss_dssp CBCCTTCEEECSSSEEEEEEECCC----CCCEEEEEEEEEECCTTC-------CCSSEEEEETTEEEEECCTTEEECTTS
T ss_pred ccCCCCceEEeCCCEEEEEEEeCCcCCcCcccEEEEEEeccCCccCCCCCCcccCCCccccccCceEeecCCCceeccCC
Confidence 56 6899999999999999987664 9999999864
Q ss_pred ------cCCeEEecCCcceeeecCCCCCCCCCCCCCceEEEEeCCCCeEEEEEe-EEEeeCC--CCCCCcEEEEEeCCCC
Q psy8444 123 ------CGGHLQAQDYKRHLYSHARYGHDNYGKSMDCDWTIEAEPGKNVHLTFL-TFDIESN--KDCEYDYVEVYSGLDS 193 (248)
Q Consensus 123 ------C~~~~~~~~~~~~~~~Sp~y~p~~yp~~~~C~w~I~~p~~~~i~l~f~-~f~l~~~--~~C~~d~l~I~dg~~~ 193 (248)
|++.+ ..+..|.|+||+| |..||++.+|.|.|++|+|++|+|.|. +|+||.. ..|.+|+|+|+||
T Consensus 159 ~~C~~~Cg~~~--~~~~~G~i~SP~y-P~~Yp~~~~C~w~I~~~~g~~I~l~f~~~f~le~~~~~~C~~D~l~i~dg--- 232 (286)
T 1nt0_A 159 HTCSALCSGQV--FTGRSGFLSSPEY-PQPYPKLSSCAYNIRLEEGFSITLDFVESFDVEMHPEAQCPYDSLKIQTD--- 232 (286)
T ss_dssp SCEEECCEEEE--ECSSSEEEECTTT-TSCCCSSCEEEEEEECCSSCEEEEEECSCCBBCCC----C--CEEEEECS---
T ss_pred CCccccccCce--ecCCceEEeCCCC-CCCCCCCCEEEEEEECCCceEEEEEEeceEEeccCCCCCCCCcEEEEEeC---
Confidence 33331 1234569999999 999999999999999999999999996 8999975 6899999999998
Q ss_pred CcCCcceecccCCCCCCcEEecCCEEEEEEeeeeE
Q psy8444 194 SVSQASYGRFCGTTVALKFQSFRDLRIMTSVHMIM 228 (248)
Q Consensus 194 ~~~~~~~~~~cg~~~p~~~~S~~n~~~v~f~s~~~ 228 (248)
.+++++|||...|..++|++|.|+|+|.++.+
T Consensus 233 ---~~~~~~~CG~~~p~~~~S~~n~l~i~F~sd~~ 264 (286)
T 1nt0_A 233 ---KREYGPFCGKTLPPRIETDSNKVTITFTTDES 264 (286)
T ss_dssp ---SCEEEEECBSSCCCCEECSSSEEEEEEECCSC
T ss_pred ---CcceEEEcCCCCCCCEEeeCCEEEEEEEeCCC
Confidence 46789999999999999999999999999876
No 4
>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens}
Probab=100.00 E-value=1.3e-45 Score=326.65 Aligned_cols=215 Identities=31% Similarity=0.531 Sum_probs=202.4
Q ss_pred CCCCcEEecCceEEeCCCCCCCCCCCCcEEEEEEeCCCCeEEEEEEEEEEcCCC-CCcceEEEEEeCCCCCccceecccc
Q psy8444 8 GGCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQ-TCAYDHVVMYDGDSPDSLTLGRFCG 86 (248)
Q Consensus 8 ~~C~~~~~~~~G~i~SP~yP~~y~~~~~C~w~I~~~~g~~i~l~f~~f~l~~~~-~C~~d~l~i~dg~~~~~~~~~~~cg 86 (248)
..|++.++..+|.|+||+||..|+++..|.|.|+++++++|.|.|..|+|+... .|.+|+|.|+|+....+++++++||
T Consensus 115 ~~Cg~~~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~i~l~f~~f~le~~~~~C~~D~l~i~dg~~~~s~~~~~~cG 194 (457)
T 3kq4_B 115 TACLQDYTDDLGTFTSPNFPNNYPNNWECIYRITVRTGQLIAVHFTNFSLEEAIGNYYTDFLEIRDGGYEKSPLLGIFYG 194 (457)
T ss_dssp SCEEEEECSSCCCEECTTTTSCCCSSCEEEEEECCCSSCCCEEEEEEEECCCCBTTBCSSEEEEESSSSTTSCEEEEECS
T ss_pred ccccceeecCcEEECCCCCCCcCCCCceEEEEEEeCCCCEEEEEEEEEEeecCCCCcccceEEEecCCCCCcceeeeecC
Confidence 479999999999999999999999999999999999999999999999999876 8999999999998888889999999
Q ss_pred ccCCccEEEcCCEEEEEEEeCCCccCCCeEEEEEc---ccCCeEEecCCcceeeecCCCCCCCCCCCCCceEEEEeCCCC
Q psy8444 87 IKLPYPIITGSNQLYMMFKSDASVQRKGFIATHTT---VCGGHLQAQDYKRHLYSHARYGHDNYGKSMDCDWTIEAEPGK 163 (248)
Q Consensus 87 ~~~p~~~~s~~~~l~v~f~s~~~~~~~GF~~~y~~---~C~~~~~~~~~~~~~~~Sp~y~p~~yp~~~~C~w~I~~p~~~ 163 (248)
...|..+.|.++.|+|+|++|.....+||.+.|.+ .|++.+... .|.|+||+| |..||++.+|.|.|.+++++
T Consensus 195 ~~~p~~~~S~~n~l~v~F~sd~~~~~~GF~~~y~~~~~~Cg~~~~~~---~G~i~SP~y-P~~Yp~~~~C~w~I~~~~~~ 270 (457)
T 3kq4_B 195 SNLPPTIISHSNKLWLKFKSDQIDTRSGFSAYWDGSSTGCGGNLTTS---SGTFISPNY-PMPYYHSSECYWWLKSSHGS 270 (457)
T ss_dssp SSCCCCEECSSSCEEEEEECCSSCCCCEEEEEEECCCCCCEECCCSS---EEEEECTTT-TSCCCSSCEEEEEECCSTTC
T ss_pred CCCCCCeEEcCCEEEEEEEeCCCCCcCCEEEEeccccCCCCCeEccC---cceeccCCC-CCCCCCCCEEEEEEEeCCCC
Confidence 99999999999999999999999999999999985 599887653 459999999 99999999999999999999
Q ss_pred eEEEEEeEEEeeCCCCCCCcEEEEEeCCCCCcCCcceecccCCCCCCcEEecCCEEEEEEeeeeE
Q psy8444 164 NVHLTFLTFDIESNKDCEYDYVEVYSGLDSSVSQASYGRFCGTTVALKFQSFRDLRIMTSVHMIM 228 (248)
Q Consensus 164 ~i~l~f~~f~l~~~~~C~~d~l~I~dg~~~~~~~~~~~~~cg~~~p~~~~S~~n~~~v~f~s~~~ 228 (248)
+|+|+|.+|+||....|.+|+|+||||.... +++++++||...|..++|++|.|+|+|.++.+
T Consensus 271 ~i~l~f~~f~le~~~~C~~D~l~i~dg~~~~--~~~l~~~CG~~~p~~i~S~~n~l~v~f~sd~~ 333 (457)
T 3kq4_B 271 AFELEFKDFHLEHHPNCTLDYLAVYDGPSSN--SHLLTQLCGDEKPPLIRSSGDSMFIKLRTDEG 333 (457)
T ss_dssp CEEEEEEECCCCCCTTCCSSEEEEEESSSTT--SEEEEEECSSCCCCCEECSSSCEEEEEECCSS
T ss_pred EEEEEEEeeeecCCCCcCCCEEEEEeCCCCC--chhhhhhcCCcCCCCEEecCCEEEEEEEeCCc
Confidence 9999999999999999999999999998876 88999999999999999999999999998764
No 5
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A
Probab=100.00 E-value=8.9e-45 Score=329.69 Aligned_cols=214 Identities=29% Similarity=0.619 Sum_probs=188.7
Q ss_pred CCCCcEEec-CceEEeCCCCCCCCCCCCcEEEEEEeCC-CCeEEEEEE-EEEEcCCCCCcceEEEEEeCCCCCccceecc
Q psy8444 8 GGCKYEITA-PNGVIKTPNHPDYYPSKRECIWHFTTTP-GHRIKLVFQ-EFELEPHQTCAYDHVVMYDGDSPDSLTLGRF 84 (248)
Q Consensus 8 ~~C~~~~~~-~~G~i~SP~yP~~y~~~~~C~w~I~~~~-g~~i~l~f~-~f~l~~~~~C~~d~l~i~dg~~~~~~~~~~~ 84 (248)
..|++.++. .+|.|+||+||..||++..|.|.|++|. +++|.|.|. .|+|+. ..|.+|+|.|+||....++.++++
T Consensus 4 ~~Cgg~~~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~p~~~~~I~l~F~~~f~le~-~~C~~D~l~i~dg~~~~~~~l~~~ 82 (579)
T 2qqk_A 4 PPCGGRLNSKDAGYITSPGYPQDYPSHQNCEWIVYAPEPNQKIVLNFNPHFEIEK-HDCKYDFIEIRDGDSESADLLGKH 82 (579)
T ss_dssp -CCCEEEETTSCEEEECTTTTSCCCSSCCEEEEEECSSTTSEEEEEECSCCBCCC-TTSSSSEEEEEESSSTTSEEEEEE
T ss_pred CCCCCEEEeCCCeEEeCCCCCCCCcCCCEEEEEEEECCCCcEEEEEEeccccccc-CCCCeeEEEEEeCCCCCcceeeeE
Confidence 379999986 6899999999999999999999999985 679999999 899986 579999999999988778889999
Q ss_pred ccccCCccEEEcCCEEEEEEEeCCCccCCCeEEEEEcc------cCCeEEecCCcceeeecCCCCCCCCCCCCCceEEEE
Q psy8444 85 CGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATHTTV------CGGHLQAQDYKRHLYSHARYGHDNYGKSMDCDWTIE 158 (248)
Q Consensus 85 cg~~~p~~~~s~~~~l~v~f~s~~~~~~~GF~~~y~~~------C~~~~~~~~~~~~~~~Sp~y~p~~yp~~~~C~w~I~ 158 (248)
||...|..++|+++.|+|+|+++.....+||.+.|.+. |++.+... .|.|+||+| |..||++.+|.|.|.
T Consensus 83 CG~~~p~~i~S~~n~l~v~F~Sd~~~~~~GF~~~y~~~~~~~~~Cg~~~~~~---~G~i~SP~y-P~~Yp~~~~C~w~I~ 158 (579)
T 2qqk_A 83 CGNIAPPTIISSGSMLYIKFTSDYARQGAGFSLRYEIFKTGSEDCSKNFTSP---NGTIESPGF-PEKYPHNLDCTFTIL 158 (579)
T ss_dssp CTTSCCCCEECSSSEEEEEEECC---CCCBCEEEEEEECCCCCCCCCEECCS---EEEEECTTT-TSCCCSSCEEEEEEE
T ss_pred CCCCCCCCEEecCCEEEEEEEECCCCCCCceEEEEEEcccccccccceeccC---CceecCCCC-cccCCCCCeEEEEEE
Confidence 99999999999999999999999988999999999853 99987653 459999999 999999999999999
Q ss_pred eCCCCeEEEEEeEEEeeCC------CCCCCcEEEEEeCCCCCcCCcceecccCCCCCCcEEecCCEEEEEEeeeeE
Q psy8444 159 AEPGKNVHLTFLTFDIESN------KDCEYDYVEVYSGLDSSVSQASYGRFCGTTVALKFQSFRDLRIMTSVHMIM 228 (248)
Q Consensus 159 ~p~~~~i~l~f~~f~l~~~------~~C~~d~l~I~dg~~~~~~~~~~~~~cg~~~p~~~~S~~n~~~v~f~s~~~ 228 (248)
+|++++|.|.|.+|+||.+ ..|.+|+|+||||.... ++++++|||...|..++|++|.|.|+|.++.+
T Consensus 159 ~~~g~~I~l~F~~f~le~~~~~~~~~~C~~D~l~I~dg~~~~--~~~~~~~CG~~~p~~i~S~~n~l~i~F~sd~~ 232 (579)
T 2qqk_A 159 AKPKMEIILQFLIFDLEHDPLQVGEGDCKYDWLDIWDGIPHV--GPLIGKYCGTKTPSELRSSTGILSLTFHTDMA 232 (579)
T ss_dssp CCTTEEEEEEEEEEEC-------------CCEEEEESSSTTT--SCEEEEECSSSCCCCEEECSSEEEEEEECCSS
T ss_pred cCCCCEEEEEEEEEEeecccccccCCCCCCEEEEEEeCCCCC--CceeEEeCCCCCCCcEEeeCCeEEEEEecccc
Confidence 9999999999999999974 57999999999998775 88999999999999999999999999999864
No 6
>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-44 Score=301.36 Aligned_cols=207 Identities=31% Similarity=0.531 Sum_probs=177.9
Q ss_pred CcEEecCceEEeCCCCCCCCCCCCcEEEEEEeCCCCeEEEEEEEEEEcCCCCCcceEEEEEeCCCCCccceeccccccCC
Q psy8444 11 KYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVVMYDGDSPDSLTLGRFCGIKLP 90 (248)
Q Consensus 11 ~~~~~~~~G~i~SP~yP~~y~~~~~C~w~I~~~~g~~i~l~f~~f~l~~~~~C~~d~l~i~dg~~~~~~~~~~~cg~~~p 90 (248)
+..++..+|.|+||+||..|+++..|.|.|++++|++|+|+|..|+|+....|.+|+|.|+|+. ..++++||...|
T Consensus 2 g~~lt~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~L~F~~f~le~~~~C~~D~l~v~dg~----~~~~~~CG~~~~ 77 (278)
T 3dem_A 2 TVELNNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESSYLCEYDYVKVETED----QVLATFCGRETT 77 (278)
T ss_dssp -----CCEEEEECTTTTSCCCSSEEEEEEEECCTTEEEEEEEEEEECCCCGGGCSSEEEEECSS----CEEEEECSBSSS
T ss_pred cceeccCCceEeCCCCCCCCcCCCcEEEEEEECCCCEEEEEEEEEEeCCCCCCCCcEEEEecCC----cccceEcCCcCC
Confidence 4578899999999999999999999999999999999999999999999889999999999975 357899998753
Q ss_pred --------ccEEEcCCEEEEEEEeCCCccC--CCeEEEEEcc----cCCeEE----------------------------
Q psy8444 91 --------YPIITGSNQLYMMFKSDASVQR--KGFIATHTTV----CGGHLQ---------------------------- 128 (248)
Q Consensus 91 --------~~~~s~~~~l~v~f~s~~~~~~--~GF~~~y~~~----C~~~~~---------------------------- 128 (248)
..++|+++.|+|+|+++..... .||.|.|.+. |.....
T Consensus 78 ~~~~~~~~~~~~S~~n~l~v~F~Sd~~~~~~~~GF~~~y~~~~~~~C~~~~~~~~~c~~~C~n~~g~~~C~C~~Gy~l~~ 157 (278)
T 3dem_A 78 DTEQTPGQEVVLSPGSFMSITFRSDFSNEERFTGFDAHYMAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHT 157 (278)
T ss_dssp SSSCCCTTCCEECSSSEEEEEEEECSCCCSCCCEEEEEEEEEECCTTTC-----CCCSSEEEEETTEEEEECCTTCEECT
T ss_pred CcccCCCCccEEecCCeEEEEEecCcccccccceeEEEEEEeccccCCCCCCCcccCCcCcCCccCCcEEEeCCcceecc
Confidence 5799999999999999987654 7999999863 321110
Q ss_pred ------------ecCCcceeeecCCCCCCCCCCCCCceEEEEeCCCCeEEEEEeE-EEeeCC--CCCCCcEEEEEeCCCC
Q psy8444 129 ------------AQDYKRHLYSHARYGHDNYGKSMDCDWTIEAEPGKNVHLTFLT-FDIESN--KDCEYDYVEVYSGLDS 193 (248)
Q Consensus 129 ------------~~~~~~~~~~Sp~y~p~~yp~~~~C~w~I~~p~~~~i~l~f~~-f~l~~~--~~C~~d~l~I~dg~~~ 193 (248)
...+..|.|+||+| |..||++.+|.|+|++|++++|.|+|.+ |+||.. ..|.+|+|+|+||
T Consensus 158 d~~~C~~~Cgg~~~~~~~G~i~SP~y-P~~Yp~~~~C~w~i~~~~g~~i~l~f~~~f~le~~~~~~C~~D~l~i~dg--- 233 (278)
T 3dem_A 158 DNRTCRVECSDNLFTQRTGVITSPDF-PNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDHPEVPCPYDYIKIKVG--- 233 (278)
T ss_dssp TSSCEECCCCCCCBCSSEEEEESTTT-TSCCCSSCEEEEEEECCTTCCEEEEECSCCBBCCCSSSSSSSCEEEEEET---
T ss_pred CCCCCcccCCCceecCCccceeCCCC-CCCCCCcCeEEEEEEeCCCcEEEEEEccccccccCCCCCCCCCEEEEecC---
Confidence 01234679999999 9999999999999999999999999998 999973 5799999999998
Q ss_pred CcCCcceecccCCCCCCcEEecCCEEEEEEeeeeE
Q psy8444 194 SVSQASYGRFCGTTVALKFQSFRDLRIMTSVHMIM 228 (248)
Q Consensus 194 ~~~~~~~~~~cg~~~p~~~~S~~n~~~v~f~s~~~ 228 (248)
...+++|||...|..++|++|.|+|+|.|+.+
T Consensus 234 ---~~~~~~~CG~~~p~~~~s~~~~l~v~F~sd~~ 265 (278)
T 3dem_A 234 ---PKVLGPFCGEKAPEPISTQSHSVLILFHSDNS 265 (278)
T ss_dssp ---TEEEEEECBSSCCCCEECSCSEEEEEEECCSS
T ss_pred ---CcccccccCCCCCCCEEEcCCEEEEEEEECCC
Confidence 45789999999999999999999999999865
No 7
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens}
Probab=100.00 E-value=2.5e-42 Score=297.08 Aligned_cols=205 Identities=31% Similarity=0.524 Sum_probs=175.4
Q ss_pred EEecCceEEeCCCCCCCCCCCCcEEEEEEeCCCCeEEEEEEEEEEcCCCCCcceEEEEEeCCCCCccceeccccccCC--
Q psy8444 13 EITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVVMYDGDSPDSLTLGRFCGIKLP-- 90 (248)
Q Consensus 13 ~~~~~~G~i~SP~yP~~y~~~~~C~w~I~~~~g~~i~l~f~~f~l~~~~~C~~d~l~i~dg~~~~~~~~~~~cg~~~p-- 90 (248)
.++...|.|+||+||..|+++++|.|.|++|+|++|+|.|.+|+||.+..|.+|||.|+|+.. .+.++||...+
T Consensus 4 ~lt~~~G~i~SP~yP~~Yp~n~~C~W~I~~~~g~~I~l~F~~f~lE~~~~C~~D~l~i~dg~~----~~~~~cG~~~~~~ 79 (361)
T 4aqb_A 4 ELNNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESSYLCEYDYVKVETEDQ----VLATFCGRETTDT 79 (361)
T ss_dssp EEESSEEEEECTTTTSCCCSSEEEEEEEECCTTEEEEEEEEEEECCCCGGGCSSEEEEECSSC----EEEEECSBSSSSS
T ss_pred EEeCCeEEEeCCCCCCCCCCCCeEEEEEEECCCCEEEEEEeEEEecCCCCCCceEEEEccCCc----ccceeeccccCCC
Confidence 578899999999999999999999999999999999999999999999999999999999864 35667776543
Q ss_pred ------ccEEEcCCEEEEEEEeCCCccC--CCeEEEEEccc--------------CCe-----------------EE---
Q psy8444 91 ------YPIITGSNQLYMMFKSDASVQR--KGFIATHTTVC--------------GGH-----------------LQ--- 128 (248)
Q Consensus 91 ------~~~~s~~~~l~v~f~s~~~~~~--~GF~~~y~~~C--------------~~~-----------------~~--- 128 (248)
..+.|.++.|+|+|++|.+... .||.|+|.+.. ... +.
T Consensus 80 ~~~~~~~~~~S~~n~l~v~F~SD~s~~~~~~GF~a~y~~~~~~~c~~~~~~~~~~~~~c~n~~g~~~csC~~g~~l~~~~ 159 (361)
T 4aqb_A 80 EQTPGQEVVLSPGSFMSITFRSDFSNEERFTGFDAHYMAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDN 159 (361)
T ss_dssp SCCCTTCCEECSSSEEEEEEEECSCCCSCCCEEEEEEEEEECCGGGTGGGSSSCCSSEEEEETTEEEEECCTTCEECTTS
T ss_pred ccCCCccceeccCCEeEEEEEeCCcccccccccccceeeccccccccccccCCCCCccCCccCCCceeccCCCeEEeccc
Confidence 3589999999999999987665 59999997631 100 00
Q ss_pred ----------ecCCcceeeecCCCCCCCCCCCCCceEEEEeCCCCeEEEEEeE-EEeeC--CCCCCCcEEEEEeCCCCCc
Q psy8444 129 ----------AQDYKRHLYSHARYGHDNYGKSMDCDWTIEAEPGKNVHLTFLT-FDIES--NKDCEYDYVEVYSGLDSSV 195 (248)
Q Consensus 129 ----------~~~~~~~~~~Sp~y~p~~yp~~~~C~w~I~~p~~~~i~l~f~~-f~l~~--~~~C~~d~l~I~dg~~~~~ 195 (248)
......|.|+||+| |..||++.+|.|.|++++|++|.|.|.+ |+++. +..|.+|+|+|+||
T Consensus 160 ~~~~~~~c~~~~~~~~G~i~SP~y-P~~Yp~~~~C~w~i~~~~g~~i~l~f~~~~~~e~~~~~~C~~D~l~i~dg----- 233 (361)
T 4aqb_A 160 RTCRVECSDNLFTQRTGVITSPDF-PNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDHPEVPCPYDYIKIKVG----- 233 (361)
T ss_dssp SCEECCCCCCCBCSSEEEEESTTT-TSCCCSSCEEEEEEECCTTCEEEEEECSCCBBCCCSSSSSSSSEEEEEET-----
T ss_pred cccccccccceEeCCCcEEecCCC-CCCCCCCceeeEEeeeccCcEEEEEEeecccccCCccCccCCCeEEEeeC-----
Confidence 01234568999999 9999999999999999999999999987 56665 35699999999998
Q ss_pred CCcceecccCCCCCCcEEecCCEEEEEEeeeeE
Q psy8444 196 SQASYGRFCGTTVALKFQSFRDLRIMTSVHMIM 228 (248)
Q Consensus 196 ~~~~~~~~cg~~~p~~~~S~~n~~~v~f~s~~~ 228 (248)
..++++|||...|..++|++|.|+|+|.|+.+
T Consensus 234 -~~~~~~~cG~~~p~~~~s~~n~~~i~F~SD~~ 265 (361)
T 4aqb_A 234 -PKVLGPFCGEKAPEPISTQSHSVLILFHSDNS 265 (361)
T ss_dssp -TEEEEEECBSSCCCCEECSCSEEEEEEECCSC
T ss_pred -CeeEEeeCCCCCCCCEeecCCeEEEEEEeCCC
Confidence 56789999999999999999999999999876
No 8
>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein, cell adhesion, extracellular matrix; 2.30A {Homo sapiens}
Probab=99.95 E-value=4.9e-27 Score=176.88 Aligned_cols=117 Identities=34% Similarity=0.604 Sum_probs=110.6
Q ss_pred CCCCCcEEecCceEEeCCCCCCCCCCCCcEEEEEEeCCCCeEEEEEEEEEEcCCCCCcceEEEEEeCCCCCccceecccc
Q psy8444 7 EGGCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVVMYDGDSPDSLTLGRFCG 86 (248)
Q Consensus 7 ~~~C~~~~~~~~G~i~SP~yP~~y~~~~~C~w~I~~~~g~~i~l~f~~f~l~~~~~C~~d~l~i~dg~~~~~~~~~~~cg 86 (248)
...|++.++..+|.|+||+||..|+++..|.|.|+++++++|+|+|..|+|+....|.+|+|.|+|+....+..++++||
T Consensus 4 ~~~Cgg~l~~~~G~i~SP~yP~~Yp~n~~C~W~I~~~~g~~I~L~F~~f~le~~~~C~~D~l~I~dg~~~~~~~~~~~CG 83 (149)
T 2wno_A 4 AKECGGVFTDPKQIFKSPGFPNEYEDNQICYWHIRLKYGQRIHLSFLDFDLEDDPGCLADYVEIYDSYDDVHGFVGRYCG 83 (149)
T ss_dssp CSCCCEEECSSEEEEECTTTTSCCCTTCEEEEEEECCTTCEEEEEEEEEECCCCTTCCSSEEEEESSSSSSSSEEEEECS
T ss_pred CCCCCCEEECCceEEECCCCCcCCCCCCEEEEEEEECCCCEEEEEEEEEEecCCCCCCCCEEEEecCCCCCcceeeeEcC
Confidence 36799999999999999999999999999999999999999999999999999889999999999998877788999999
Q ss_pred ccCCccEEEcCCEEEEEEEeCCCccCCCeEEEEEccc
Q psy8444 87 IKLPYPIITGSNQLYMMFKSDASVQRKGFIATHTTVC 123 (248)
Q Consensus 87 ~~~p~~~~s~~~~l~v~f~s~~~~~~~GF~~~y~~~C 123 (248)
...|..++|+++.|+|+|++|.....+||.+.|.+..
T Consensus 84 ~~~p~~~~S~~n~l~v~F~Sd~~~~~~GF~a~y~~~~ 120 (149)
T 2wno_A 84 DELPDDIISTGNVMTLKFLSDASVTAGGFQIKYVAMD 120 (149)
T ss_dssp SSCCCCEECSSSEEEEEEECCSSCCCCEEEEEEEEEC
T ss_pred CCCCCCEEEeCCEEEEEEEECCCCCCCCEEEEEEEEC
Confidence 9989999999999999999999989999999999863
No 9
>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding site, complex with ethylamine, COMP protein, lectin pathway of complement; 1.45A {Rattus norvegicus} PDB: 3pob_A 3pof_A 3pog_A 3poi_A 3poe_A
Probab=99.93 E-value=5.9e-26 Score=163.81 Aligned_cols=110 Identities=32% Similarity=0.650 Sum_probs=100.5
Q ss_pred CCCCcEE-ecCceEEeCCCCCCCCCCCCcEEEEEEeCCCCeEEEEEE-EEEEcCCC--CCcceEEEEEeCCCCCccceec
Q psy8444 8 GGCKYEI-TAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQ-EFELEPHQ--TCAYDHVVMYDGDSPDSLTLGR 83 (248)
Q Consensus 8 ~~C~~~~-~~~~G~i~SP~yP~~y~~~~~C~w~I~~~~g~~i~l~f~-~f~l~~~~--~C~~d~l~i~dg~~~~~~~~~~ 83 (248)
..|++.+ +..+|.|+||+||..|+++..|.|.|+++++++|+|.|. .|+|+... .|.+|+|.|+|+. ..+++
T Consensus 2 ~~Cgg~~~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~i~l~f~d~f~le~~~~~~C~~D~l~i~dg~----~~~~~ 77 (115)
T 3poj_A 2 VECSGNLFTQRTGTITSPDYPNPYPKSSECSYTIDLEEGFMVTLQFEDIFDIEDHPEVPCPYDYIKIKAGS----KVWGP 77 (115)
T ss_dssp -CEEEEEECSSEEEEECTTTTSCCCTTCEEEEEEECCTTCCCEEEECSCCBBCCCSSSSSCSCEEEEEETT----EEEEE
T ss_pred eECCCceEcCCCEEEcCCCCCcCCcCCCeEEEEEEcCCCCEEEEEEecceecccCCCCCCCCeEEEEEcCC----ccccc
Confidence 3688874 888999999999999999999999999999999999999 59999753 7999999999985 46789
Q ss_pred cccccCCccEEEcCCEEEEEEEeCCCccCCCeEEEEEc
Q psy8444 84 FCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATHTT 121 (248)
Q Consensus 84 ~cg~~~p~~~~s~~~~l~v~f~s~~~~~~~GF~~~y~~ 121 (248)
+||...|..+.|+++.|+|+|++|....++||.++|++
T Consensus 78 ~CG~~~p~~~~s~~~~l~i~F~Sd~~~~~~GF~~~y~a 115 (115)
T 3poj_A 78 FCGEKSPEPISTQSHSIQILFRSDNSGENRGWRLSYRA 115 (115)
T ss_dssp ECBSSCCCCEECCCSEEEEEEECCSSCCCCBCEEEEEC
T ss_pred CcCCCCCCCEEecCCEEEEEEEcCCCCCCCCEEEEEEC
Confidence 99999999999999999999999999999999999975
No 10
>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein, cell adhesion, extracellular matrix; 2.30A {Homo sapiens}
Probab=99.93 E-value=1.2e-25 Score=169.35 Aligned_cols=102 Identities=26% Similarity=0.626 Sum_probs=93.9
Q ss_pred cccCCeEEecCCcceeeecCCCCCCCCCCCCCceEEEEeCCCCeEEEEEeEEEeeCCCCCCCcEEEEEeCCCCCcCCcce
Q psy8444 121 TVCGGHLQAQDYKRHLYSHARYGHDNYGKSMDCDWTIEAEPGKNVHLTFLTFDIESNKDCEYDYVEVYSGLDSSVSQASY 200 (248)
Q Consensus 121 ~~C~~~~~~~~~~~~~~~Sp~y~p~~yp~~~~C~w~I~~p~~~~i~l~f~~f~l~~~~~C~~d~l~I~dg~~~~~~~~~~ 200 (248)
..|++.+... .|+|+||+| |..||++.+|.|.|++|++++|+|+|.+|+||.+..|.+|+|+||||.... ++++
T Consensus 5 ~~Cgg~l~~~---~G~i~SP~y-P~~Yp~n~~C~W~I~~~~g~~I~L~F~~f~le~~~~C~~D~l~I~dg~~~~--~~~~ 78 (149)
T 2wno_A 5 KECGGVFTDP---KQIFKSPGF-PNEYEDNQICYWHIRLKYGQRIHLSFLDFDLEDDPGCLADYVEIYDSYDDV--HGFV 78 (149)
T ss_dssp SCCCEEECSS---EEEEECTTT-TSCCCTTCEEEEEEECCTTCEEEEEEEEEECCCCTTCCSSEEEEESSSSSS--SSEE
T ss_pred CCCCCEEECC---ceEEECCCC-CcCCCCCCEEEEEEEECCCCEEEEEEEEEEecCCCCCCCCEEEEecCCCCC--ccee
Confidence 3599887654 359999999 999999999999999999999999999999999889999999999998775 7899
Q ss_pred ecccCCCCCCcEEecCCEEEEEEeeeeE
Q psy8444 201 GRFCGTTVALKFQSFRDLRIMTSVHMIM 228 (248)
Q Consensus 201 ~~~cg~~~p~~~~S~~n~~~v~f~s~~~ 228 (248)
++|||...|..++|++|.|+|+|.|+.+
T Consensus 79 ~~~CG~~~p~~~~S~~n~l~v~F~Sd~~ 106 (149)
T 2wno_A 79 GRYCGDELPDDIISTGNVMTLKFLSDAS 106 (149)
T ss_dssp EEECSSSCCCCEECSSSEEEEEEECCSS
T ss_pred eeEcCCCCCCCEEEeCCEEEEEEEECCC
Confidence 9999999999999999999999999875
No 11
>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}
Probab=99.92 E-value=1.4e-23 Score=185.59 Aligned_cols=115 Identities=31% Similarity=0.651 Sum_probs=106.6
Q ss_pred CCCCcEEecCceEEeCCCCCCCCCCCCcEEEEEEeCCCCeEEEEEEEEEEcCC------CCCcceEEEEEeCCCCCccce
Q psy8444 8 GGCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPH------QTCAYDHVVMYDGDSPDSLTL 81 (248)
Q Consensus 8 ~~C~~~~~~~~G~i~SP~yP~~y~~~~~C~w~I~~~~g~~i~l~f~~f~l~~~------~~C~~d~l~i~dg~~~~~~~~ 81 (248)
..|++.++..+|.|+||+||..||++..|.|.|++++|++|.|.|..|+|+.. ..|.+|+|.|+||....++.+
T Consensus 6 ~~Cg~~l~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~L~F~~f~le~~~~~~~~~~C~~D~l~i~dg~~~~~~~~ 85 (460)
T 2qqo_A 6 EDCSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPLQVGEGDCKYDWLDIWDGIPHVGPLI 85 (460)
T ss_dssp -CCCEEECSSEEEEECTTTTSCCCSSCEEEEEEECCTTCEEEEEEEEEECCCC--------CCSSEEEEESSSTTTSCEE
T ss_pred CCCCCEEeCCceEEeCCCCCCCCCCCCEEEEEEEcCCCCEEEEEEEEEEcccccccccCCCCCCCEEEEEcCCCCCCccc
Confidence 46999999999999999999999999999999999999999999999999975 479999999999987777889
Q ss_pred eccccccCCccEEEcCCEEEEEEEeCCCccCCCeEEEEEcc
Q psy8444 82 GRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATHTTV 122 (248)
Q Consensus 82 ~~~cg~~~p~~~~s~~~~l~v~f~s~~~~~~~GF~~~y~~~ 122 (248)
+++||...|..+.|+++.|.|+|+++......||.+.|.+.
T Consensus 86 ~~~CG~~~p~~i~S~~n~l~v~F~Sd~~~~~~GF~~~y~~~ 126 (460)
T 2qqo_A 86 GKYCGTKTPSELRSSTGILSLTFHTDMAVAKDGFSARYYLV 126 (460)
T ss_dssp EEECTTCCCCCEEECSSEEEEEEECCSSCCCCEEEEEEEEE
T ss_pred ceEeCCcCCcCEEeeCCEEEEEEeccceeecCcEEEEEEEE
Confidence 99999999999999999999999999999999999999875
No 12
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1
Probab=99.92 E-value=6.9e-24 Score=187.07 Aligned_cols=115 Identities=35% Similarity=0.683 Sum_probs=108.6
Q ss_pred CCCCcEEecCceEEeCCCCCCCCCCCCcEEEEEEeCCCCeEEEEEEEEEEcCCC------CCcceEEEEEeCCCCCccce
Q psy8444 8 GGCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQ------TCAYDHVVMYDGDSPDSLTL 81 (248)
Q Consensus 8 ~~C~~~~~~~~G~i~SP~yP~~y~~~~~C~w~I~~~~g~~i~l~f~~f~l~~~~------~C~~d~l~i~dg~~~~~~~~ 81 (248)
..|++.++..+|.|+||+||..||++..|.|.|++|+|++|+|.|..|+|+... .|.+|+|.|+||....++.+
T Consensus 9 ~~Cg~~~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~f~le~~~~~~~~~~C~~D~l~i~dg~~~~~~~~ 88 (450)
T 2qqm_A 9 PECSQNYTTPSGVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLEPDSNPPGGMFCRYDRLEIWDGFPDVGPHI 88 (450)
T ss_dssp CTTCEEECSSEEEEECTTTTSCCCSSCEEEEEEECGGGCCEEEEEEEEECCCC----CCCSSCSSEEEEESSSTTTSCEE
T ss_pred CCCCCeEeCCcEEEeCCCCCcCCCCCCeEEEEEEeCCCCEEEEEEEEEEeEeccCCCCCCCCCCcEEEEecCCCCCCccc
Confidence 579999999999999999999999999999999999999999999999999865 79999999999988778899
Q ss_pred eccccccCCccEEEcCCEEEEEEEeCCCccCCCeEEEEEcc
Q psy8444 82 GRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATHTTV 122 (248)
Q Consensus 82 ~~~cg~~~p~~~~s~~~~l~v~f~s~~~~~~~GF~~~y~~~ 122 (248)
+++||...|..+.|+++.|+|+|++|......||.+.|.+.
T Consensus 89 ~~~CG~~~p~~i~S~~n~l~v~F~Sd~~~~~~GF~~~y~~~ 129 (450)
T 2qqm_A 89 GRYCGQKTPGRIRSSSGILSMVFYTDSAIAKEGFSANYSVL 129 (450)
T ss_dssp EEECTTCCCCEEEECSSEEEEEEECCSSCCCCEEEEEEEEC
T ss_pred eeecCCcCCCcEEEcCCEEEEEEEeCCccccCCeEEEEecc
Confidence 99999999999999999999999999999999999999874
No 13
>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Probab=99.90 E-value=2.4e-23 Score=150.26 Aligned_cols=104 Identities=16% Similarity=0.392 Sum_probs=96.7
Q ss_pred CCCCcEEecCceEEeCCCCCCCCCCCCcEEEEEEeCCCCeEEEEEEEEEEcCCCCCcceEEEEEeCCCCCccceeccccc
Q psy8444 8 GGCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVVMYDGDSPDSLTLGRFCGI 87 (248)
Q Consensus 8 ~~C~~~~~~~~G~i~SP~yP~~y~~~~~C~w~I~~~~g~~i~l~f~~f~l~~~~~C~~d~l~i~dg~~~~~~~~~~~cg~ 87 (248)
..|++.++..+|.|+|| |+++.+|.|.|++|+|++|+|.|..|+| +|.+|+|.|+||... ++.++++||.
T Consensus 7 ~~Cgg~l~~~~G~i~SP-----Yp~~~~C~w~I~~~~g~~I~l~f~~f~l----~C~~D~l~i~dg~~~-~~~~~~~CG~ 76 (116)
T 1spp_B 7 DECGRVIKDTSGSISNT-----DRQKNLCTWTILMKPDQKVRMAIPYLNL----ACGKEYVEVFDGLLS-GPSYGKLCAG 76 (116)
T ss_dssp GGTTEEECCSEEEEECC-----SSCCSEEEEEEECCTTCEEEEEEEEEEC----CBTTEEEEEESSSTT-SCEEEEESEE
T ss_pred CCCCCEEeCCceEEeCC-----CcCCCCEEEEEEeCCCCEEEEEEeeCcc----cCCCCEEEEEcCCCC-CcccccccCc
Confidence 57999999999999998 7889999999999999999999999999 588999999999865 6788999998
Q ss_pred cCCccEEEcCCEEEEEEEeCCCccCCCeEEEEEcc
Q psy8444 88 KLPYPIITGSNQLYMMFKSDASVQRKGFIATHTTV 122 (248)
Q Consensus 88 ~~p~~~~s~~~~l~v~f~s~~~~~~~GF~~~y~~~ 122 (248)
. |..++|+++.|+|+|++|.....+||.+.|.+.
T Consensus 77 ~-p~~~~S~~n~l~v~F~Sd~~~~~~GF~~~y~~~ 110 (116)
T 1spp_B 77 A-AIVFLSTANTMTIKYNRISGNSSSPFLIYFYGS 110 (116)
T ss_dssp E-EEEEECSSSEEEEEEEESSCSCCCCCEEEEEEE
T ss_pred C-CCCEEecCCEEEEEEEECCCCCCCCEEEEEEEe
Confidence 8 889999999999999999999999999999875
No 14
>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Probab=99.90 E-value=3e-23 Score=148.00 Aligned_cols=103 Identities=22% Similarity=0.377 Sum_probs=94.9
Q ss_pred CCCCcEEecCceEEeCCCCCCCCCCCCcEEEEEEeCCCCeEEEEEEEEEEcCCCCCcceEEEEEeCCCCCccceeccccc
Q psy8444 8 GGCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVVMYDGDSPDSLTLGRFCGI 87 (248)
Q Consensus 8 ~~C~~~~~~~~G~i~SP~yP~~y~~~~~C~w~I~~~~g~~i~l~f~~f~l~~~~~C~~d~l~i~dg~~~~~~~~~~~cg~ 87 (248)
..|++.++..+|.|+|| ||++.+|.|.|++++|++|+|.|..|++ +|.+|+|.|+||... ++.++++||.
T Consensus 4 ~~Cgg~l~~~~G~i~SP-----Yp~~~~C~w~I~~~~g~~I~l~f~~f~l----~C~~D~l~I~dg~~~-~~~~~~~CG~ 73 (109)
T 1spp_A 4 HACGGRLTDDYGTIFTY-----KGPKTECVWTLQVDPKYKLLVSIPTLNL----TCGKEYVEVLEGAPG-SKSLGKFCEG 73 (109)
T ss_dssp CSSCEEEECSEEEEECC-----CSSCSEEEEEEECCTTSEEEEEEEEEEC----CTTTEEEEEESSSTT-SCEEEEESEE
T ss_pred cCCCCEEeCCcEEEeCC-----CCCCCcEEEEEEcCCCCEEEEEEeeeec----cCCCCEEEEEeCCCC-CchhhhhhCC
Confidence 57999999999999998 7889999999999999999999999998 589999999999865 6788999998
Q ss_pred cCCccEEEcCCEEEEEEEeCCCccCCCeEEEEEcc
Q psy8444 88 KLPYPIITGSNQLYMMFKSDASVQRKGFIATHTTV 122 (248)
Q Consensus 88 ~~p~~~~s~~~~l~v~f~s~~~~~~~GF~~~y~~~ 122 (248)
. |..+.| ++.|+|+|++|......||.+.|.+.
T Consensus 74 ~-p~~~~S-~n~l~v~F~Sd~~~~~~GF~~~y~~~ 106 (109)
T 1spp_A 74 L-SILNRG-SSGMTVKYKRDSGHPASPYEIIFLRD 106 (109)
T ss_dssp E-EEEEEE-CTTCEEEEEECTTCCCCCCEEEEEEE
T ss_pred C-CCCEEE-CCEEEEEEEeCCCCCCCCEEEEEEEe
Confidence 6 778999 99999999999998999999999864
No 15
>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding site, complex with ethylamine, COMP protein, lectin pathway of complement; 1.45A {Rattus norvegicus} PDB: 3pob_A 3pof_A 3pog_A 3poi_A 3poe_A
Probab=99.90 E-value=4.1e-24 Score=154.11 Aligned_cols=98 Identities=29% Similarity=0.522 Sum_probs=86.7
Q ss_pred ccCCeEEecCCcceeeecCCCCCCCCCCCCCceEEEEeCCCCeEEEEEe-EEEeeCC--CCCCCcEEEEEeCCCCCcCCc
Q psy8444 122 VCGGHLQAQDYKRHLYSHARYGHDNYGKSMDCDWTIEAEPGKNVHLTFL-TFDIESN--KDCEYDYVEVYSGLDSSVSQA 198 (248)
Q Consensus 122 ~C~~~~~~~~~~~~~~~Sp~y~p~~yp~~~~C~w~I~~p~~~~i~l~f~-~f~l~~~--~~C~~d~l~I~dg~~~~~~~~ 198 (248)
.|++.+. ....|.|+||+| |..||++.+|.|.|++|++++|+|+|. .|+||.. ..|.+|+|+|+|| ..
T Consensus 3 ~Cgg~~~--~~~~G~i~SP~y-P~~Yp~~~~C~w~I~~~~g~~i~l~f~d~f~le~~~~~~C~~D~l~i~dg------~~ 73 (115)
T 3poj_A 3 ECSGNLF--TQRTGTITSPDY-PNPYPKSSECSYTIDLEEGFMVTLQFEDIFDIEDHPEVPCPYDYIKIKAG------SK 73 (115)
T ss_dssp CEEEEEE--CSSEEEEECTTT-TSCCCTTCEEEEEEECCTTCCCEEEECSCCBBCCCSSSSSCSCEEEEEET------TE
T ss_pred ECCCceE--cCCCEEEcCCCC-CcCCcCCCeEEEEEEcCCCCEEEEEEecceecccCCCCCCCCeEEEEEcC------Cc
Confidence 4887752 223569999999 999999999999999999999999999 5999974 4899999999998 45
Q ss_pred ceecccCCCCCCcEEecCCEEEEEEeeeeE
Q psy8444 199 SYGRFCGTTVALKFQSFRDLRIMTSVHMIM 228 (248)
Q Consensus 199 ~~~~~cg~~~p~~~~S~~n~~~v~f~s~~~ 228 (248)
++++|||...|..++|++|.|+|+|.|+.+
T Consensus 74 ~~~~~CG~~~p~~~~s~~~~l~i~F~Sd~~ 103 (115)
T 3poj_A 74 VWGPFCGEKSPEPISTQSHSIQILFRSDNS 103 (115)
T ss_dssp EEEEECBSSCCCCEECCCSEEEEEEECCSS
T ss_pred ccccCcCCCCCCCEEecCCEEEEEEEcCCC
Confidence 789999999999999999999999999865
No 16
>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal fluid protein, CUB domain, X-RAY growth factor; 1.90A {Bos taurus} SCOP: b.23.1.1
Probab=99.90 E-value=7.2e-23 Score=147.28 Aligned_cols=105 Identities=18% Similarity=0.346 Sum_probs=96.5
Q ss_pred CCCCCcEEecCceEEeCCCCCCCCCCCCcEEEEEEeCCCCeEEEEEEEEEEcCCCCCcceEEEEEeCCCCCccceecccc
Q psy8444 7 EGGCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVVMYDGDSPDSLTLGRFCG 86 (248)
Q Consensus 7 ~~~C~~~~~~~~G~i~SP~yP~~y~~~~~C~w~I~~~~g~~i~l~f~~f~l~~~~~C~~d~l~i~dg~~~~~~~~~~~cg 86 (248)
...|++.++..+|.|+|| |+++.+|.|.|++++|++|+|.|..|++ +|.+|+|.|+||... ++.++++||
T Consensus 7 ~~~Cgg~l~~~~G~i~Sp-----y~~~~~C~w~I~~~~g~~I~l~f~~f~l----~C~~D~l~i~dg~~~-~~~~~~~CG 76 (114)
T 1sfp_A 7 NTNCGGILKEESGVIATY-----YGPKTNCVWTIQMPPEYHVRVSIQYLQL----NCNKESLEIIDGLPG-SPVLGKICE 76 (114)
T ss_dssp ECSSCEEECCSEEEEECC-----CSSCSEEEEEEECCTTCEEEEEEEEEEC----CTTTEEEEEESSSTT-SCEEEEESE
T ss_pred CCCCCCeEECCcEEEeCC-----CcCCCCEEEEEEeCCCCEEEEEEeeeee----ecCCCEEEEEcCCCC-CcceeEecC
Confidence 468999999999999997 6789999999999999999999999998 588999999999874 678899999
Q ss_pred ccCCccEEEcCCEEEEEEEeCCCccCCCeEEEEEcc
Q psy8444 87 IKLPYPIITGSNQLYMMFKSDASVQRKGFIATHTTV 122 (248)
Q Consensus 87 ~~~p~~~~s~~~~l~v~f~s~~~~~~~GF~~~y~~~ 122 (248)
.. |..+.|.++.|+|+|++|.....+||.+.|.+.
T Consensus 77 ~~-p~~~~S~~n~l~v~F~Sd~~~~~~GF~~~y~~~ 111 (114)
T 1sfp_A 77 GS-LMDYRSSGSIMTVKYIREPEHPASFYEVLYFQD 111 (114)
T ss_dssp EE-EEEEECSSSEEEEEEEECTTSCCCCCEEEEEEE
T ss_pred cC-CCCEEecCCeEEEEEEECCCCCCCCEEEEEEEE
Confidence 88 789999999999999999988999999999864
No 17
>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=99.89 E-value=1.4e-22 Score=156.05 Aligned_cols=107 Identities=30% Similarity=0.540 Sum_probs=97.8
Q ss_pred CcEEecCceEEeCCCCCCCCCCCCcEEEEEEeCCCCeEEEEEEEEEEcCCCCCcceEEEEEeCCCCCccceecccccc--
Q psy8444 11 KYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVVMYDGDSPDSLTLGRFCGIK-- 88 (248)
Q Consensus 11 ~~~~~~~~G~i~SP~yP~~y~~~~~C~w~I~~~~g~~i~l~f~~f~l~~~~~C~~d~l~i~dg~~~~~~~~~~~cg~~-- 88 (248)
+..++..+|.|+||+||..|+++..|.|.|++++|++|+|+|..|+|+....|.+|+|.|+|+. ..++++||..
T Consensus 5 ~~~l~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~f~le~~~~C~~D~l~i~dg~----~~~~~~CG~~~~ 80 (170)
T 1szb_A 5 PKWPEPVFGRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLELSHLCEYDFVKLSSGA----KVLATLCGQEST 80 (170)
T ss_dssp CCCCCCCEEEEECTTTTSCCCSSCEEEEEEECCTTEEEEEEEEEEECCCCTTSCSSEEEEESSS----SEEEEECSBTTT
T ss_pred cceEcCCCeEEECCCCCcCCcCCCcEEEEEEcCCCCEEEEEEEEEEccCCCCCCCCEEEEEeCC----ccccccCCCCCC
Confidence 4567889999999999999999999999999999999999999999999889999999999985 4678999987
Q ss_pred ----CC--ccEEEcCCEEEEEEEeCCCccC--CCeEEEEEc
Q psy8444 89 ----LP--YPIITGSNQLYMMFKSDASVQR--KGFIATHTT 121 (248)
Q Consensus 89 ----~p--~~~~s~~~~l~v~f~s~~~~~~--~GF~~~y~~ 121 (248)
.| ..++|+++.|+|+|+++..... .||.+.|..
T Consensus 81 ~~~~~P~~~~~~S~~n~l~v~F~Sd~~~~~~~~Gf~~~~~~ 121 (170)
T 1szb_A 81 DTERAPGKDTFYSLGSSLDITFRSDYSNEKPFTGFEAFYAA 121 (170)
T ss_dssp TCSSSCTTCCEECSSSEEEEEEECCSCCSSCCCEEEEEEEE
T ss_pred ccccCCCCceEEeeCCeEEEEEeccccccCcCcCceeeeec
Confidence 46 6899999999999999988765 999999975
No 18
>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=99.89 E-value=8.1e-23 Score=155.67 Aligned_cols=103 Identities=35% Similarity=0.587 Sum_probs=92.1
Q ss_pred ecCceEEeCCCCCCCCCCCCcEEEEEEeCCCCeEEEEEEEEEEcCCCCCcceEEEEEeCCCCCccceeccccccCC----
Q psy8444 15 TAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVVMYDGDSPDSLTLGRFCGIKLP---- 90 (248)
Q Consensus 15 ~~~~G~i~SP~yP~~y~~~~~C~w~I~~~~g~~i~l~f~~f~l~~~~~C~~d~l~i~dg~~~~~~~~~~~cg~~~p---- 90 (248)
+..+|.|+||+||..|+++..|.|.|++++|++|+|+|..|+|+....|.+|+|.|+||. ..++++||...|
T Consensus 2 ~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~f~le~~~~C~~D~l~i~dg~----~~~~~~CG~~~~~~~~ 77 (159)
T 1nzi_A 2 PTMYGEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIELSENCAYDSVQIISGD----TEEGRLCGQRSSNNPH 77 (159)
T ss_dssp CCSEEEEECTTTTSCCCSSEEEEEEEECCTTEEEEEEEEEEECCCCGGGCSSEEEEEC-------CCEEECSEECCCCSS
T ss_pred CCCCEEEECCCCccCCCCCCCEEEEEEeCCCCEEEEEEeEEEecCCCCCCCCEEEEEeCC----chhcccCCCCCCCccc
Confidence 567899999999999999999999999999999999999999998888999999999986 357899998764
Q ss_pred ----ccEEEcCCEEEEEEEeCCCccC--CCeEEEEEc
Q psy8444 91 ----YPIITGSNQLYMMFKSDASVQR--KGFIATHTT 121 (248)
Q Consensus 91 ----~~~~s~~~~l~v~f~s~~~~~~--~GF~~~y~~ 121 (248)
..++|+++.|+|+|+++..... +||.+.|..
T Consensus 78 ~P~~~~~~S~~n~l~v~F~Sd~~~~~~~~GF~~~y~~ 114 (159)
T 1nzi_A 78 SPIVEEFQVPYNKLQVIFKSDFSNEERFTGFAAYYVA 114 (159)
T ss_dssp CCCSEEEEESSSEEEEEEEECSCCTTCCCEEEEEEEE
T ss_pred CCcceeEEecCCeEEEEEEecCccCcccccceeeeec
Confidence 3699999999999999987765 899999986
No 19
>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1
Probab=99.88 E-value=1.6e-22 Score=168.22 Aligned_cols=116 Identities=30% Similarity=0.603 Sum_probs=102.0
Q ss_pred CCCCCCCCCcE-EecCceEEeCCCCCCCCCCCCcEEEEEEeCCCCeEEEEEE-EEEEcCC--CCCcceEEEEEeCCCCCc
Q psy8444 3 HDCKEGGCKYE-ITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQ-EFELEPH--QTCAYDHVVMYDGDSPDS 78 (248)
Q Consensus 3 ~~C~~~~C~~~-~~~~~G~i~SP~yP~~y~~~~~C~w~I~~~~g~~i~l~f~-~f~l~~~--~~C~~d~l~i~dg~~~~~ 78 (248)
+.|. ..|++. ++..+|.|+||+||..||++..|.|.|++++|++|+|.|. .|+|+.. ..|.+|+|.|+||.
T Consensus 159 ~~C~-~~Cg~~~~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~~f~le~~~~~~C~~D~l~i~dg~---- 233 (286)
T 1nt0_A 159 HTCS-ALCSGQVFTGRSGFLSSPEYPQPYPKLSSCAYNIRLEEGFSITLDFVESFDVEMHPEAQCPYDSLKIQTDK---- 233 (286)
T ss_dssp SCEE-ECCEEEEECSSSEEEECTTTTSCCCSSCEEEEEEECCSSCEEEEEECSCCBBCCC----C--CEEEEECSS----
T ss_pred CCcc-ccccCceecCCceEEeCCCCCCCCCCCCEEEEEEECCCceEEEEEEeceEEeccCCCCCCCCcEEEEEeCC----
Confidence 3454 479887 8899999999999999999999999999999999999996 8999975 57999999999984
Q ss_pred cceeccccccCCccEEEcCCEEEEEEEeCCCccCCCeEEEEEccc
Q psy8444 79 LTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATHTTVC 123 (248)
Q Consensus 79 ~~~~~~cg~~~p~~~~s~~~~l~v~f~s~~~~~~~GF~~~y~~~C 123 (248)
..++++||...|..+.|.++.|+|+|++|.....+||.|.|.+..
T Consensus 234 ~~~~~~CG~~~p~~~~S~~n~l~i~F~sd~~~~~~GF~~~y~~~~ 278 (286)
T 1nt0_A 234 REYGPFCGKTLPPRIETDSNKVTITFTTDESGNHTGWKIHYTSTA 278 (286)
T ss_dssp CEEEEECBSSCCCCEECSSSEEEEEEECCSCCCCCBCEEEEEEEC
T ss_pred cceEEEcCCCCCCCEEeeCCEEEEEEEeCCCCCCCCEEEEEEEec
Confidence 568899999999999999999999999999999999999998763
No 20
>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}
Probab=99.87 E-value=3.2e-22 Score=165.84 Aligned_cols=114 Identities=33% Similarity=0.713 Sum_probs=103.1
Q ss_pred CCCCCCCCCcE-EecCceEEeCCCCCCCCCCCCcEEEEEEeCCCCeEEEEEEE-EEEcCC--CCCcceEEEEEeCCCCCc
Q psy8444 3 HDCKEGGCKYE-ITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQE-FELEPH--QTCAYDHVVMYDGDSPDS 78 (248)
Q Consensus 3 ~~C~~~~C~~~-~~~~~G~i~SP~yP~~y~~~~~C~w~I~~~~g~~i~l~f~~-f~l~~~--~~C~~d~l~i~dg~~~~~ 78 (248)
+.|. ..|++. ++..+|.|+||+||..||++..|.|.|++++|++|.|.|.+ |+|+.. ..|.+|+|.|+||.
T Consensus 160 ~~C~-~~Cgg~~~~~~~G~i~SP~yP~~Yp~~~~C~w~i~~~~g~~i~l~f~~~f~le~~~~~~C~~D~l~i~dg~---- 234 (278)
T 3dem_A 160 RTCR-VECSDNLFTQRTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDHPEVPCPYDYIKIKVGP---- 234 (278)
T ss_dssp SCEE-CCCCCCCBCSSEEEEESTTTTSCCCSSCEEEEEEECCTTCCEEEEECSCCBBCCCSSSSSSSCEEEEEETT----
T ss_pred CCCc-ccCCCceecCCccceeCCCCCCCCCCcCeEEEEEEeCCCcEEEEEEccccccccCCCCCCCCCEEEEecCC----
Confidence 4555 578774 58889999999999999999999999999999999999997 999874 46999999999985
Q ss_pred cceeccccccCCccEEEcCCEEEEEEEeCCCccCCCeEEEEEc
Q psy8444 79 LTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATHTT 121 (248)
Q Consensus 79 ~~~~~~cg~~~p~~~~s~~~~l~v~f~s~~~~~~~GF~~~y~~ 121 (248)
..++++||...|..++|+++.|+|+|++|.....+||.|+|++
T Consensus 235 ~~~~~~CG~~~p~~~~s~~~~l~v~F~sd~~~~~~GF~~~y~~ 277 (278)
T 3dem_A 235 KVLGPFCGEKAPEPISTQSHSVLILFHSDNSGENRGWRLSYRA 277 (278)
T ss_dssp EEEEEECBSSCCCCEECSCSEEEEEEECCSSCCCCBCEEEEEE
T ss_pred cccccccCCCCCCCEEEcCCEEEEEEEECCCCCcCCEEEEEEE
Confidence 4578999999999999999999999999999999999999986
No 21
>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=99.87 E-value=4e-22 Score=153.46 Aligned_cols=89 Identities=26% Similarity=0.449 Sum_probs=82.1
Q ss_pred cceeeecCCCCCCCCCCCCCceEEEEeCCCCeEEEEEeEEEeeCCCCCCCcEEEEEeCCCCCcCCcceecccCCC-----
Q psy8444 133 KRHLYSHARYGHDNYGKSMDCDWTIEAEPGKNVHLTFLTFDIESNKDCEYDYVEVYSGLDSSVSQASYGRFCGTT----- 207 (248)
Q Consensus 133 ~~~~~~Sp~y~p~~yp~~~~C~w~I~~p~~~~i~l~f~~f~l~~~~~C~~d~l~I~dg~~~~~~~~~~~~~cg~~----- 207 (248)
..|.|+||+| |..||++.+|.|.|++|++++|+|+|.+|+||....|.+|+|+|||| ..++++|||..
T Consensus 11 ~~G~i~SP~y-P~~Yp~~~~C~w~I~~~~g~~I~l~f~~f~le~~~~C~~D~l~i~dg------~~~~~~~CG~~~~~~~ 83 (170)
T 1szb_A 11 VFGRLASPGF-PGEYANDQERRWTLTAPPGYRLRLYFTHFDLELSHLCEYDFVKLSSG------AKVLATLCGQESTDTE 83 (170)
T ss_dssp CEEEEECTTT-TSCCCSSCEEEEEEECCTTEEEEEEEEEEECCCCTTSCSSEEEEESS------SSEEEEECSBTTTTCS
T ss_pred CCeEEECCCC-CcCCcCCCcEEEEEEcCCCCEEEEEEEEEEccCCCCCCCCEEEEEeC------CccccccCCCCCCccc
Confidence 4569999999 99999999999999999999999999999999988999999999998 45789999986
Q ss_pred -CC--CcEEecCCEEEEEEeeeeE
Q psy8444 208 -VA--LKFQSFRDLRIMTSVHMIM 228 (248)
Q Consensus 208 -~p--~~~~S~~n~~~v~f~s~~~ 228 (248)
.| ..++|++|.|+|+|.|+.+
T Consensus 84 ~~P~~~~~~S~~n~l~v~F~Sd~~ 107 (170)
T 1szb_A 84 RAPGKDTFYSLGSSLDITFRSDYS 107 (170)
T ss_dssp SSCTTCCEECSSSEEEEEEECCSC
T ss_pred cCCCCceEEeeCCeEEEEEecccc
Confidence 47 6899999999999999875
No 22
>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=99.87 E-value=1.8e-22 Score=153.73 Aligned_cols=89 Identities=27% Similarity=0.465 Sum_probs=79.4
Q ss_pred cceeeecCCCCCCCCCCCCCceEEEEeCCCCeEEEEEeEEEeeCCCCCCCcEEEEEeCCCCCcCCcceecccCCCCC---
Q psy8444 133 KRHLYSHARYGHDNYGKSMDCDWTIEAEPGKNVHLTFLTFDIESNKDCEYDYVEVYSGLDSSVSQASYGRFCGTTVA--- 209 (248)
Q Consensus 133 ~~~~~~Sp~y~p~~yp~~~~C~w~I~~p~~~~i~l~f~~f~l~~~~~C~~d~l~I~dg~~~~~~~~~~~~~cg~~~p--- 209 (248)
..|.|+||+| |..||++.+|.|.|++|++++|+|+|.+|+||....|.+|+|+|||| ..++++|||...|
T Consensus 4 ~~G~i~SP~y-P~~Yp~~~~C~w~I~~~~g~~I~l~f~~f~le~~~~C~~D~l~i~dg------~~~~~~~CG~~~~~~~ 76 (159)
T 1nzi_A 4 MYGEILSPNY-PQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIELSENCAYDSVQIISG------DTEEGRLCGQRSSNNP 76 (159)
T ss_dssp SEEEEECTTT-TSCCCSSEEEEEEEECCTTEEEEEEEEEEECCCCGGGCSSEEEEEC---------CCEEECSEECCCCS
T ss_pred CCEEEECCCC-ccCCCCCCCEEEEEEeCCCCEEEEEEeEEEecCCCCCCCCEEEEEeC------CchhcccCCCCCCCcc
Confidence 4568999999 99999999999999999999999999999999988999999999998 3478999998664
Q ss_pred -----CcEEecCCEEEEEEeeeeE
Q psy8444 210 -----LKFQSFRDLRIMTSVHMIM 228 (248)
Q Consensus 210 -----~~~~S~~n~~~v~f~s~~~ 228 (248)
..++|++|.|+|+|.|+.+
T Consensus 77 ~~P~~~~~~S~~n~l~v~F~Sd~~ 100 (159)
T 1nzi_A 77 HSPIVEEFQVPYNKLQVIFKSDFS 100 (159)
T ss_dssp SCCCSEEEEESSSEEEEEEEECSC
T ss_pred cCCcceeEEecCCeEEEEEEecCc
Confidence 3699999999999999865
No 23
>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H
Probab=99.87 E-value=1.1e-21 Score=177.71 Aligned_cols=115 Identities=35% Similarity=0.669 Sum_probs=108.6
Q ss_pred CCCCcEEecCceEEeCCCCCCCCCCCCcEEEEEEeCCCCeEEEEEEEEEEcCCC------CCcceEEEEEeCCCCCccce
Q psy8444 8 GGCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQ------TCAYDHVVMYDGDSPDSLTL 81 (248)
Q Consensus 8 ~~C~~~~~~~~G~i~SP~yP~~y~~~~~C~w~I~~~~g~~i~l~f~~f~l~~~~------~C~~d~l~i~dg~~~~~~~~ 81 (248)
..|++.++..+|.|.||+||..||++..|.|.|++|+|++|.|.|..|+|+... .|.+|||.|+||....++.+
T Consensus 127 ~~C~~~~~~~~G~i~SPnyP~~Yp~n~~C~W~I~~p~g~~I~L~F~~F~lE~~~~~~~~~~C~~D~l~I~dG~~~~~~~l 206 (577)
T 4gz9_A 127 PECSQNYTAPTGVIKSPGFPEKYPNSLECTYIIFAPKMSEIILEFESFDLEQDSNPPGGMFCRYDRLEIWDGFPEVGPHI 206 (577)
T ss_dssp CEEEEEECSSEEEEECTTTTSCCCSSCEEEEEEECGGGCCEEEEEEEEECCCCCSCSTTCCCCSSEEEEESSSTTTSCEE
T ss_pred cccceeecCCCccccCCCCCCCCCCCceEEEEEEECCCCEEEEEEEEEEeeecCCCCCCCccCccEEEEEcCCCCCCcee
Confidence 468999999999999999999999999999999999999999999999998754 39999999999988888899
Q ss_pred eccccccCCccEEEcCCEEEEEEEeCCCccCCCeEEEEEcc
Q psy8444 82 GRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATHTTV 122 (248)
Q Consensus 82 ~~~cg~~~p~~~~s~~~~l~v~f~s~~~~~~~GF~~~y~~~ 122 (248)
+++||...|..+.|.++.|+|+|++|.....+||.|.|+++
T Consensus 207 g~~CG~~~P~~i~S~~n~l~i~F~SD~s~~~~GF~a~y~~v 247 (577)
T 4gz9_A 207 GRYCGQKTPGRIRSSSGVLSMVFYTDSAIAKEGFSANYSVL 247 (577)
T ss_dssp EEECSSSCCCCEEECSSEEEEEEECCSSCCCCEEEEEEEEC
T ss_pred EEEeCCCCCCCcceeCCEEEEEEEECCCCCCceEEEEEEEE
Confidence 99999999999999999999999999999999999999875
No 24
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A
Probab=99.86 E-value=3.2e-20 Score=168.47 Aligned_cols=115 Identities=31% Similarity=0.651 Sum_probs=102.6
Q ss_pred CCCCcEEecCceEEeCCCCCCCCCCCCcEEEEEEeCCCCeEEEEEEEEEEcCC------CCCcceEEEEEeCCCCCccce
Q psy8444 8 GGCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPH------QTCAYDHVVMYDGDSPDSLTL 81 (248)
Q Consensus 8 ~~C~~~~~~~~G~i~SP~yP~~y~~~~~C~w~I~~~~g~~i~l~f~~f~l~~~------~~C~~d~l~i~dg~~~~~~~~ 81 (248)
..|++.++..+|.|+||+||..||++..|.|.|+++++++|.|.|..|+|+.. ..|.+|+|.|+||....++.+
T Consensus 125 ~~Cg~~~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~F~~f~le~~~~~~~~~~C~~D~l~I~dg~~~~~~~~ 204 (579)
T 2qqk_A 125 EDCSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPLQVGEGDCKYDWLDIWDGIPHVGPLI 204 (579)
T ss_dssp CCCCCEECCSEEEEECTTTTSCCCSSCEEEEEEECCTTEEEEEEEEEEEC-------------CCEEEEESSSTTTSCEE
T ss_pred ccccceeccCCceecCCCCcccCCCCCeEEEEEEcCCCCEEEEEEEEEEeecccccccCCCCCCEEEEEEeCCCCCCcee
Confidence 45999999999999999999999999999999999999999999999999975 479999999999987777889
Q ss_pred eccccccCCccEEEcCCEEEEEEEeCCCccCCCeEEEEEcc
Q psy8444 82 GRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATHTTV 122 (248)
Q Consensus 82 ~~~cg~~~p~~~~s~~~~l~v~f~s~~~~~~~GF~~~y~~~ 122 (248)
+++||...|..+.|.++.|.|+|+++.....+||.+.|.+.
T Consensus 205 ~~~CG~~~p~~i~S~~n~l~i~F~sd~~~~~~GF~~~y~~~ 245 (579)
T 2qqk_A 205 GKYCGTKTPSELRSSTGILSLTFHTDMAVAKDGFSARYYLV 245 (579)
T ss_dssp EEECSSSCCCCEEECSSEEEEEEECCSSCCCCEEEEEEEEE
T ss_pred EEeCCCCCCCcEEeeCCeEEEEEeccccccccceEEEEEEE
Confidence 99999999999999999999999999999999999999863
No 25
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1
Probab=99.86 E-value=4.4e-22 Score=175.51 Aligned_cols=103 Identities=20% Similarity=0.455 Sum_probs=93.2
Q ss_pred EcccCCeEEecCCcceeeecCCCCCCCCCCCCCceEEEEeCCCCeEEEEEeEEEeeCCC------CCCCcEEEEEeCCCC
Q psy8444 120 TTVCGGHLQAQDYKRHLYSHARYGHDNYGKSMDCDWTIEAEPGKNVHLTFLTFDIESNK------DCEYDYVEVYSGLDS 193 (248)
Q Consensus 120 ~~~C~~~~~~~~~~~~~~~Sp~y~p~~yp~~~~C~w~I~~p~~~~i~l~f~~f~l~~~~------~C~~d~l~I~dg~~~ 193 (248)
...|++.+... .|.|+||+| |..||++.+|.|.|++|++++|.|.|.+|+||.+. .|.+|+|+||||...
T Consensus 8 ~~~Cg~~~~~~---~G~i~SP~y-P~~Yp~~~~C~w~I~~~~g~~I~l~f~~f~le~~~~~~~~~~C~~D~l~i~dg~~~ 83 (450)
T 2qqm_A 8 GPECSQNYTTP---SGVIKSPGF-PEKYPNSLECTYIVFAPKMSEIILEFESFDLEPDSNPPGGMFCRYDRLEIWDGFPD 83 (450)
T ss_dssp -CTTCEEECSS---EEEEECTTT-TSCCCSSCEEEEEEECGGGCCEEEEEEEEECCCC----CCCSSCSSEEEEESSSTT
T ss_pred CCCCCCeEeCC---cEEEeCCCC-CcCCCCCCeEEEEEEeCCCCEEEEEEEEEEeEeccCCCCCCCCCCcEEEEecCCCC
Confidence 34599988754 459999999 99999999999999999999999999999999864 799999999999887
Q ss_pred CcCCcceecccCCCCCCcEEecCCEEEEEEeeeeE
Q psy8444 194 SVSQASYGRFCGTTVALKFQSFRDLRIMTSVHMIM 228 (248)
Q Consensus 194 ~~~~~~~~~~cg~~~p~~~~S~~n~~~v~f~s~~~ 228 (248)
. ++++++|||...|..++|++|.|+|+|.|+.+
T Consensus 84 ~--~~~~~~~CG~~~p~~i~S~~n~l~v~F~Sd~~ 116 (450)
T 2qqm_A 84 V--GPHIGRYCGQKTPGRIRSSSGILSMVFYTDSA 116 (450)
T ss_dssp T--SCEEEEECTTCCCCEEEECSSEEEEEEECCSS
T ss_pred C--CccceeecCCcCCCcEEEcCCEEEEEEEeCCc
Confidence 5 88999999999999999999999999999875
No 26
>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}
Probab=99.85 E-value=3.1e-21 Score=170.56 Aligned_cols=101 Identities=25% Similarity=0.591 Sum_probs=91.2
Q ss_pred ccCCeEEecCCcceeeecCCCCCCCCCCCCCceEEEEeCCCCeEEEEEeEEEeeCC------CCCCCcEEEEEeCCCCCc
Q psy8444 122 VCGGHLQAQDYKRHLYSHARYGHDNYGKSMDCDWTIEAEPGKNVHLTFLTFDIESN------KDCEYDYVEVYSGLDSSV 195 (248)
Q Consensus 122 ~C~~~~~~~~~~~~~~~Sp~y~p~~yp~~~~C~w~I~~p~~~~i~l~f~~f~l~~~------~~C~~d~l~I~dg~~~~~ 195 (248)
.|++.+... .|.|+||+| |..||++.+|.|.|++|+|++|.|.|.+|+||.+ ..|.+|+|+||||....
T Consensus 7 ~Cg~~l~~~---~G~i~SP~y-P~~Yp~~~~C~w~I~~~~g~~I~L~F~~f~le~~~~~~~~~~C~~D~l~i~dg~~~~- 81 (460)
T 2qqo_A 7 DCSKNFTSP---NGTIESPGF-PEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPLQVGEGDCKYDWLDIWDGIPHV- 81 (460)
T ss_dssp CCCEEECSS---EEEEECTTT-TSCCCSSCEEEEEEECCTTCEEEEEEEEEECCCC--------CCSSEEEEESSSTTT-
T ss_pred CCCCEEeCC---ceEEeCCCC-CCCCCCCCEEEEEEEcCCCCEEEEEEEEEEcccccccccCCCCCCCEEEEEcCCCCC-
Confidence 399987653 459999999 9999999999999999999999999999999985 47999999999998775
Q ss_pred CCcceecccCCCCCCcEEecCCEEEEEEeeeeE
Q psy8444 196 SQASYGRFCGTTVALKFQSFRDLRIMTSVHMIM 228 (248)
Q Consensus 196 ~~~~~~~~cg~~~p~~~~S~~n~~~v~f~s~~~ 228 (248)
++++++|||...|..++|++|.|.|+|.|+.+
T Consensus 82 -~~~~~~~CG~~~p~~i~S~~n~l~v~F~Sd~~ 113 (460)
T 2qqo_A 82 -GPLIGKYCGTKTPSELRSSTGILSLTFHTDMA 113 (460)
T ss_dssp -SCEEEEECTTCCCCCEEECSSEEEEEEECCSS
T ss_pred -CcccceEeCCcCCcCEEeeCCEEEEEEeccce
Confidence 88999999999999999999999999999875
No 27
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens}
Probab=99.85 E-value=1.6e-20 Score=161.17 Aligned_cols=152 Identities=28% Similarity=0.539 Sum_probs=121.6
Q ss_pred CCCCCCCCCcEEecCceEEeCCCCCCCCCCCCcEEEEEEeCCCCeEEEEEEE-EEEcCC--CCCcceEEEEEeCCCCCcc
Q psy8444 3 HDCKEGGCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQE-FELEPH--QTCAYDHVVMYDGDSPDSL 79 (248)
Q Consensus 3 ~~C~~~~C~~~~~~~~G~i~SP~yP~~y~~~~~C~w~I~~~~g~~i~l~f~~-f~l~~~--~~C~~d~l~i~dg~~~~~~ 79 (248)
+.|....|++.++..+|.|.||+||..|+++..|.|.|++++|++|.|.|.+ |+++.. ..|.+|+|.|+||. .
T Consensus 160 ~~~~~~~c~~~~~~~~G~i~SP~yP~~Yp~~~~C~w~i~~~~g~~i~l~f~~~~~~e~~~~~~C~~D~l~i~dg~----~ 235 (361)
T 4aqb_A 160 RTCRVECSDNLFTQRTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDHPEVPCPYDYIKIKVGP----K 235 (361)
T ss_dssp SCEECCCCCCCBCSSEEEEESTTTTSCCCSSCEEEEEEECCTTCEEEEEECSCCBBCCCSSSSSSSSEEEEEETT----E
T ss_pred cccccccccceEeCCCcEEecCCCCCCCCCCceeeEEeeeccCcEEEEEEeecccccCCccCccCCCeEEEeeCC----e
Confidence 3455567888899999999999999999999999999999999999999986 566653 45999999999985 4
Q ss_pred ceeccccccCCccEEEcCCEEEEEEEeCCCccCCCeEEEEEcc---cCCeEEecCCcceeeecCCCCCCCCCCCCCceEE
Q psy8444 80 TLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATHTTV---CGGHLQAQDYKRHLYSHARYGHDNYGKSMDCDWT 156 (248)
Q Consensus 80 ~~~~~cg~~~p~~~~s~~~~l~v~f~s~~~~~~~GF~~~y~~~---C~~~~~~~~~~~~~~~Sp~y~p~~yp~~~~C~w~ 156 (248)
.++++||...|..+.|.++.|+|+|++|.....+||+++|++. |... .....|.+.++.. . | ...-.+.
T Consensus 236 ~~~~~cG~~~p~~~~s~~n~~~i~F~SD~~~~~~GF~~~y~~~~~~C~~~---~~p~~G~~~~~~~-~--~--~~g~~v~ 307 (361)
T 4aqb_A 236 VLGPFCGEKAPEPISTQSHSVLILFHSDNSGENRGWRLSYRAAGNECPEL---QPPVHGKIEPSQA-K--Y--FFKDQVL 307 (361)
T ss_dssp EEEEECBSSCCCCEECSCSEEEEEEECCSCCCCCBCEEEEEEECCEECCC---CCCTTEEEESCCS-S--E--ETTCEEE
T ss_pred eEEeeCCCCCCCCEeecCCeEEEEEEeCCCCCccceEEEEEEccCCCCCC---CCCCCCEEecCCC-C--c--ccCCEEE
Confidence 6789999999999999999999999999999999999999875 4432 1223335543222 1 1 2234678
Q ss_pred EEeCCCCeEE
Q psy8444 157 IEAEPGKNVH 166 (248)
Q Consensus 157 I~~p~~~~i~ 166 (248)
+...+|+.+.
T Consensus 308 ~~C~~GY~l~ 317 (361)
T 4aqb_A 308 VSCDTGYKVL 317 (361)
T ss_dssp EEECTTEEEE
T ss_pred EEeCCCeEEe
Confidence 8899998764
No 28
>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Probab=99.85 E-value=2.3e-21 Score=139.82 Aligned_cols=90 Identities=27% Similarity=0.516 Sum_probs=80.2
Q ss_pred ccCCeEEecCCcceeeecCCCCCCCCCCCCCceEEEEeCCCCeEEEEEeEEEeeCCCCCCCcEEEEEeCCCCCcCCccee
Q psy8444 122 VCGGHLQAQDYKRHLYSHARYGHDNYGKSMDCDWTIEAEPGKNVHLTFLTFDIESNKDCEYDYVEVYSGLDSSVSQASYG 201 (248)
Q Consensus 122 ~C~~~~~~~~~~~~~~~Sp~y~p~~yp~~~~C~w~I~~p~~~~i~l~f~~f~l~~~~~C~~d~l~I~dg~~~~~~~~~~~ 201 (248)
.||+.+.... |.|+|| ||++.+|.|.|++|+|++|.|+|.+|+| .|.+|+|+||||... +++++
T Consensus 8 ~Cgg~l~~~~---G~i~SP------Yp~~~~C~w~I~~~~g~~I~l~f~~f~l----~C~~D~l~i~dg~~~---~~~~~ 71 (116)
T 1spp_B 8 ECGRVIKDTS---GSISNT------DRQKNLCTWTILMKPDQKVRMAIPYLNL----ACGKEYVEVFDGLLS---GPSYG 71 (116)
T ss_dssp GTTEEECCSE---EEEECC------SSCCSEEEEEEECCTTCEEEEEEEEEEC----CBTTEEEEEESSSTT---SCEEE
T ss_pred CCCCEEeCCc---eEEeCC------CcCCCCEEEEEEeCCCCEEEEEEeeCcc----cCCCCEEEEEcCCCC---Ccccc
Confidence 5999877654 588885 7889999999999999999999999999 688999999999764 67899
Q ss_pred cccCCCCCCcEEecCCEEEEEEeeeeE
Q psy8444 202 RFCGTTVALKFQSFRDLRIMTSVHMIM 228 (248)
Q Consensus 202 ~~cg~~~p~~~~S~~n~~~v~f~s~~~ 228 (248)
+|||.. |..++|++|.|+|+|.|+.+
T Consensus 72 ~~CG~~-p~~~~S~~n~l~v~F~Sd~~ 97 (116)
T 1spp_B 72 KLCAGA-AIVFLSTANTMTIKYNRISG 97 (116)
T ss_dssp EESEEE-EEEEECSSSEEEEEEEESSC
T ss_pred cccCcC-CCCEEecCCEEEEEEEECCC
Confidence 999988 88899999999999999876
No 29
>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Probab=99.84 E-value=2.7e-21 Score=137.85 Aligned_cols=90 Identities=22% Similarity=0.444 Sum_probs=79.0
Q ss_pred cccCCeEEecCCcceeeecCCCCCCCCCCCCCceEEEEeCCCCeEEEEEeEEEeeCCCCCCCcEEEEEeCCCCCcCCcce
Q psy8444 121 TVCGGHLQAQDYKRHLYSHARYGHDNYGKSMDCDWTIEAEPGKNVHLTFLTFDIESNKDCEYDYVEVYSGLDSSVSQASY 200 (248)
Q Consensus 121 ~~C~~~~~~~~~~~~~~~Sp~y~p~~yp~~~~C~w~I~~p~~~~i~l~f~~f~l~~~~~C~~d~l~I~dg~~~~~~~~~~ 200 (248)
..|++.+.... |.|+|| ||++.+|.|.|++|+|++|.|+|.+|+| .|.+|+|+||||... ++++
T Consensus 4 ~~Cgg~l~~~~---G~i~SP------Yp~~~~C~w~I~~~~g~~I~l~f~~f~l----~C~~D~l~I~dg~~~---~~~~ 67 (109)
T 1spp_A 4 HACGGRLTDDY---GTIFTY------KGPKTECVWTLQVDPKYKLLVSIPTLNL----TCGKEYVEVLEGAPG---SKSL 67 (109)
T ss_dssp CSSCEEEECSE---EEEECC------CSSCSEEEEEEECCTTSEEEEEEEEEEC----CTTTEEEEEESSSTT---SCEE
T ss_pred cCCCCEEeCCc---EEEeCC------CCCCCcEEEEEEcCCCCEEEEEEeeeec----cCCCCEEEEEeCCCC---Cchh
Confidence 35999987643 588885 7899999999999999999999999998 688999999999763 6789
Q ss_pred ecccCCCCCCcEEecCCEEEEEEeeeeE
Q psy8444 201 GRFCGTTVALKFQSFRDLRIMTSVHMIM 228 (248)
Q Consensus 201 ~~~cg~~~p~~~~S~~n~~~v~f~s~~~ 228 (248)
++|||.. |..++| +|.|+|+|.|+.+
T Consensus 68 ~~~CG~~-p~~~~S-~n~l~v~F~Sd~~ 93 (109)
T 1spp_A 68 GKFCEGL-SILNRG-SSGMTVKYKRDSG 93 (109)
T ss_dssp EEESEEE-EEEEEE-CTTCEEEEEECTT
T ss_pred hhhhCCC-CCCEEE-CCEEEEEEEeCCC
Confidence 9999986 788999 9999999999864
No 30
>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal fluid protein, CUB domain, X-RAY growth factor; 1.90A {Bos taurus} SCOP: b.23.1.1
Probab=99.84 E-value=4.9e-21 Score=137.66 Aligned_cols=91 Identities=22% Similarity=0.544 Sum_probs=80.2
Q ss_pred cccCCeEEecCCcceeeecCCCCCCCCCCCCCceEEEEeCCCCeEEEEEeEEEeeCCCCCCCcEEEEEeCCCCCcCCcce
Q psy8444 121 TVCGGHLQAQDYKRHLYSHARYGHDNYGKSMDCDWTIEAEPGKNVHLTFLTFDIESNKDCEYDYVEVYSGLDSSVSQASY 200 (248)
Q Consensus 121 ~~C~~~~~~~~~~~~~~~Sp~y~p~~yp~~~~C~w~I~~p~~~~i~l~f~~f~l~~~~~C~~d~l~I~dg~~~~~~~~~~ 200 (248)
..|++.+.... |.|+|| ||++.+|.|.|++|+|++|+|.|.+|+| .|.+|+|+||||... ++++
T Consensus 8 ~~Cgg~l~~~~---G~i~Sp------y~~~~~C~w~I~~~~g~~I~l~f~~f~l----~C~~D~l~i~dg~~~---~~~~ 71 (114)
T 1sfp_A 8 TNCGGILKEES---GVIATY------YGPKTNCVWTIQMPPEYHVRVSIQYLQL----NCNKESLEIIDGLPG---SPVL 71 (114)
T ss_dssp CSSCEEECCSE---EEEECC------CSSCSEEEEEEECCTTCEEEEEEEEEEC----CTTTEEEEEESSSTT---SCEE
T ss_pred CCCCCeEECCc---EEEeCC------CcCCCCEEEEEEeCCCCEEEEEEeeeee----ecCCCEEEEEcCCCC---Ccce
Confidence 45999887543 588885 6789999999999999999999999998 688999999999763 6789
Q ss_pred ecccCCCCCCcEEecCCEEEEEEeeeeE
Q psy8444 201 GRFCGTTVALKFQSFRDLRIMTSVHMIM 228 (248)
Q Consensus 201 ~~~cg~~~p~~~~S~~n~~~v~f~s~~~ 228 (248)
++|||.. |..++|++|.|+|+|.|+.+
T Consensus 72 ~~~CG~~-p~~~~S~~n~l~v~F~Sd~~ 98 (114)
T 1sfp_A 72 GKICEGS-LMDYRSSGSIMTVKYIREPE 98 (114)
T ss_dssp EEESEEE-EEEEECSSSEEEEEEEECTT
T ss_pred eEecCcC-CCCEEecCCeEEEEEEECCC
Confidence 9999988 78899999999999999864
Done!