RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8444
(248 letters)
>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease
M disulfide bond, glycoprotein, secreted, transport,
choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo
sapiens}
Length = 457
Score = 222 bits (568), Expect = 1e-70
Identities = 63/212 (29%), Positives = 101/212 (47%), Gaps = 8/212 (3%)
Query: 3 HDCKEGGCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQT 62
D GC +T +G +PN+P Y EC W ++ G +L F++F LE H
Sbjct: 227 WDGSSTGCGGNLTTSSGTFISPNYPMPYYHSSECYWWLKSSHGSAFELEFKDFHLEHHPN 286
Query: 63 CAYDHVVMYDGDSPDSLTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATHTTV 122
C D++ +YDG S +S L + CG + P I + + +++ ++D Q +GF A +
Sbjct: 287 CTLDYLAVYDGPSSNSHLLTQLCGDEKPPLIRSSGDSMFIKLRTDEGQQGRGFKAEYRQT 346
Query: 123 CGGHLQAQDYKRHLYSHARYGHDNYGKSMDCDWTIEAEPGKNVHLTFLTFDIESNKDCEY 182
C + L S + Y ++ C+WTI A G V+ TFL FD+E + +C
Sbjct: 347 CENVVIVNQTYGILESIGY--PNPYSENQHCNWTIRATTGNTVNYTFLAFDLEHHINCST 404
Query: 183 DYVEVYSGLDSSVSQASYGRFCGTTVALKFQS 214
DY+E+Y G GR+CG + +
Sbjct: 405 DYLELYDGPR------QMGRYCGVDLPPPGST 430
Score = 198 bits (505), Expect = 2e-61
Identities = 59/207 (28%), Positives = 95/207 (45%), Gaps = 6/207 (2%)
Query: 10 CKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVV 69
C +T G I++P HP+ YP C WH P H I L+F+ F LE H C D++
Sbjct: 1 CGEILTESTGTIQSPGHPNVYPHGINCTWHILVQPNHLIHLMFETFHLEFHYNCTNDYLE 60
Query: 70 MYDGDSPDSLTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATHTTVCGGHLQA 129
+YD DS S LGR+CG +P + + N L ++F +D+ + +GF+ + +
Sbjct: 61 VYDTDSETS--LGRYCGKSIPPSLTSSGNSLMLVFVTDSDLAYEGFLINYEAISAATACL 118
Query: 130 QDYKRHLYSHARYGH-DNYGKSMDCDWTIEAEPGKNVHLTFLTFDIESNKD-CEYDYVEV 187
QDY L + +NY + +C + I G+ + + F F +E D++E+
Sbjct: 119 QDYTDDLGTFTSPNFPNNYPNNWECIYRITVRTGQLIAVHFTNFSLEEAIGNYYTDFLEI 178
Query: 188 YSGLDSSVSQASYGRFCGTTVALKFQS 214
G G F G+ + S
Sbjct: 179 RDG--GYEKSPLLGIFYGSNLPPTIIS 203
Score = 182 bits (462), Expect = 6e-55
Identities = 66/214 (30%), Positives = 90/214 (42%), Gaps = 10/214 (4%)
Query: 5 CKEGGCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPH-QTC 63
C + T G +PN P+ YP+ ECI+ T G I + F F LE
Sbjct: 112 SAATACLQDYTDDLGTFTSPNFPNNYPNNWECIYRITVRTGQLIAVHFTNFSLEEAIGNY 171
Query: 64 AYDHVVMYDGDSPDSLTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATHTTV- 122
D + + DG S LG F G LP II+ SN+L++ FKSD R GF A
Sbjct: 172 YTDFLEIRDGGYEKSPLLGIFYGSNLPPTIISHSNKLWLKFKSDQIDTRSGFSAYWDGSS 231
Query: 123 --CGGHLQAQDYKRHLYSHARYGHDNYGKSMDCDWTIEAEPGKNVHLTFLTFDIESNKDC 180
CGG+L S Y Y S +C W +++ G L F F +E + +C
Sbjct: 232 TGCGGNLTTS--SGTFISP-NYP-MPYYHSSECYWWLKSSHGSAFELEFKDFHLEHHPNC 287
Query: 181 EYDYVEVYSGLDSSVSQASYGRFCGTTVALKFQS 214
DY+ VY G S+ + CG +S
Sbjct: 288 TLDYLAVYDGPSSNSHL--LTQLCGDEKPPLIRS 319
Score = 117 bits (295), Expect = 8e-31
Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 10 CKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVV 69
+ G++++ +P+ Y + C W T G+ + F F+LE H C+ D++
Sbjct: 349 NVVIVNQTYGILESIGYPNPYSENQHCNWTIRATTGNTVNYTFLAFDLEHHINCSTDYLE 408
Query: 70 MYDGDSPDSLTLGRFCGIKLPYPIITGSNQLYMMFKSDA-SVQRKGFIAT 118
+YDG +GR+CG+ LP P T S++L ++ +D + KGF
Sbjct: 409 LYDGPR----QMGRYCGVDLPPPGSTTSSKLQVLLLTDGVGRREKGFQMQ 454
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived
antibody, developmental protein, differentiation,
glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A
Length = 579
Score = 197 bits (502), Expect = 7e-60
Identities = 60/222 (27%), Positives = 100/222 (45%), Gaps = 20/222 (9%)
Query: 7 EGGCKYEITAPN-GVIKTPNHPDYYPSKRECIWHFT-TTPGHRIKLVFQEFELEPHQTCA 64
+ C + + + G I +P +P YPS + C W P +I L F C
Sbjct: 3 DPPCGGRLNSKDAGYITSPGYPQDYPSHQNCEWIVYAPEPNQKIVLNFNPHFEIEKHDCK 62
Query: 65 YDHVVMYDGDSPDSLTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATHTTV-- 122
YD + + DGDS + LG+ CG P II+ + LY+ F SD + Q GF +
Sbjct: 63 YDFIEIRDGDSESADLLGKHCGNIAPPTIISSGSMLYIKFTSDYARQGAGFSLRYEIFKT 122
Query: 123 ----CGGHLQAQDYKRHLYSHARYGHDNYGKSMDCDWTIEAEPGKNVHLTFLTFDIESNK 178
C + + + + + Y ++DC +TI A+P + L FL FD+E +
Sbjct: 123 GSEDCSKNFTSPN---GTIESPGFP-EKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDP 178
Query: 179 ------DCEYDYVEVYSGLDSSVSQASYGRFCGTTVALKFQS 214
DC+YD+++++ G+ G++CGT + +S
Sbjct: 179 LQVGEGDCKYDWLDIWDGIPHVGP--LIGKYCGTKTPSELRS 218
Score = 145 bits (368), Expect = 1e-40
Identities = 44/188 (23%), Positives = 74/188 (39%), Gaps = 7/188 (3%)
Query: 7 EGGCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEP------H 60
C T+PNG I++P P+ YP +C + P I L F F+LE
Sbjct: 124 SEDCSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPLQVGE 183
Query: 61 QTCAYDHVVMYDGDSPDSLTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATHT 120
C YD + ++DG +G++CG K P + + + L + F +D +V + GF A +
Sbjct: 184 GDCKYDWLDIWDGIPHVGPLIGKYCGTKTPSELRSSTGILSLTFHTDMAVAKDGFSARYY 243
Query: 121 TVCGGHLQAQDYKRHLYSHARYGHDNYGKSMDCDWTIEAEPGKNVHLTFLTFDIESNKDC 180
V L+ L + + S ++ + L N D
Sbjct: 244 LVHQEPLENFQCNVPLGMESGRIANEQI-SASSTYSDGRWTPQQSRLHGDDNGWTPNLDS 302
Query: 181 EYDYVEVY 188
+Y++V
Sbjct: 303 NKEYLQVD 310
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding
domain, angiogenesis, developmental protein,
differentiation; HET: NAG FUC; 2.00A {Homo sapiens}
SCOP: b.18.1.2 b.18.1.2 b.23.1.1
Length = 450
Score = 169 bits (430), Expect = 2e-50
Identities = 54/213 (25%), Positives = 90/213 (42%), Gaps = 10/213 (4%)
Query: 3 HDCKEG-GCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQ 61
H K G C T P+GVIK+P P+ YP+ EC + I L F+ F+LEP
Sbjct: 3 HMFKRGPECSQNYTTPSGVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLEPDS 62
Query: 62 T------CAYDHVVMYDGDSPDSLTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGF 115
C YD + ++DG +GR+CG K P I + S L M+F +D+++ ++GF
Sbjct: 63 NPPGGMFCRYDRLEIWDGFPDVGPHIGRYCGQKTPGRIRSSSGILSMVFYTDSAIAKEGF 122
Query: 116 IATHTTVCGGHLQAQDYKRHLYSHARYGHDNYGKSMDCDWTIEAEPGKNVHLTFLTFDIE 175
A ++ + + L + H + + T + L +
Sbjct: 123 SANYSVLQSSVSEDFKCMEALGMESGEIHSDQITASSQYSTN--WSAERSRLNYPENGWT 180
Query: 176 SNKDCEYDYVEVYSGLDSSVSQ-ASYGRFCGTT 207
+D ++++V GL V+ + G T
Sbjct: 181 PGEDSYREWIQVDLGLLRFVTAVGTQGAISKET 213
Score = 75.9 bits (186), Expect = 4e-16
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 145 DNYGKSMDCDWTIEAEPGKNVHLTFLTFDIESN------KDCEYDYVEVYSGLDSSVSQA 198
+ Y S++C + + A + L F +FD+E + C YD +E++ G
Sbjct: 29 EKYPNSLECTYIVFAPKMSEIILEFESFDLEPDSNPPGGMFCRYDRLEIWDGFPDVGPH- 87
Query: 199 SYGRFCGTTVALKFQS 214
GR+CG + +S
Sbjct: 88 -IGRYCGQKTPGRIRS 102
>3dem_A Complement factor MAsp-3; complement system, innate immunity,
calcium binding sites, C pathway, EGF-like domain,
glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}
Length = 278
Score = 164 bits (417), Expect = 3e-50
Identities = 63/255 (24%), Positives = 95/255 (37%), Gaps = 58/255 (22%)
Query: 12 YEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVVMY 71
E+ G I++P +PD YPS E W+ T G RIKL F F LE C YD+V +
Sbjct: 3 VELNNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESSYLCEYDYVKVE 62
Query: 72 DGDSPDSLTLGRFCGIKLPYP----IITGSNQLYMMFKSDASVQRKGFIAT--------- 118
D + GR P +++ + + + F+SD S + +
Sbjct: 63 TEDQVLATFCGRETTDTEQTPGQEVVLSPGSFMSITFRSDFSNEERFTGFDAHYMAVDVD 122
Query: 119 ---------------HTTVCGGHLQAQDYKRHLYS--------------HARYGH----- 144
GG+ + + L++ R G
Sbjct: 123 ECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTCRVECSDNLFTQRTGVITSPD 182
Query: 145 --DNYGKSMDCDWTIEAEPGKNVHLTFL-TFDIESNKD--CEYDYVEVYSGLDSSVSQAS 199
+ Y KS +C +TIE E G V+L F FDIE + + C YDY+++ G
Sbjct: 183 FPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDHPEVPCPYDYIKIKVG------PKV 236
Query: 200 YGRFCGTTVALKFQS 214
G FCG +
Sbjct: 237 LGPFCGEKAPEPIST 251
Score = 135 bits (340), Expect = 9e-39
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 7/123 (5%)
Query: 1 NGHDCKEGGCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQE-FELEP 59
+ C+ T GVI +P+ P+ YP EC++ G + L F++ F++E
Sbjct: 158 DNRTCRVECSDNLFTQRTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIED 217
Query: 60 HQ--TCAYDHVVMYDGDSPDSLTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIA 117
H C YD++ + G LG FCG K P PI T S+ + ++F SD S + +G+
Sbjct: 218 HPEVPCPYDYIKIKVGPK----VLGPFCGEKAPEPISTQSHSVLILFHSDNSGENRGWRL 273
Query: 118 THT 120
++
Sbjct: 274 SYR 276
Score = 77.7 bits (191), Expect = 4e-17
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Query: 145 DNYGKSMDCDWTIEAEPGKNVHLTFLTFDIESNKDCEYDYVEVYSGLDSSVSQASYGRFC 204
D+Y + W I G + L F+ F++ES+ CEYDYV+V + FC
Sbjct: 19 DSYPSDSEVTWNITVPDGFRIKLYFMHFNLESSYLCEYDYVKVETEDQVL------ATFC 72
Query: 205 GTTVALKFQSFRDLRIMTSVHMIMLR 230
G Q+ +++ + +
Sbjct: 73 GRETTDTEQTPGQEVVLSPGSFMSIT 98
>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB
domain, EGF like domain., hydrolase, sugar binding
protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP:
b.23.1.1 b.23.1.1 g.3.11.1
Length = 286
Score = 159 bits (404), Expect = 3e-48
Identities = 51/251 (20%), Positives = 83/251 (33%), Gaps = 58/251 (23%)
Query: 16 APNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVVMYDGDS 75
G + +P P+ Y + ++ W T PG R++L F F LE C YD V + G
Sbjct: 6 PVFGRLVSPGFPEKYGNHQDRSWTLTAPPGFRLRLYFTHFNLELSYRCEYDFVKLTSGTK 65
Query: 76 PDSLTLGRFCGIKLPYP----IITGSNQLYMMFKSDASVQRKGFIA---------THTTV 122
+ G+ P + L + F SD S ++
Sbjct: 66 VLATLCGQESTDTERAPGNDTFYSLGPSLKVTFHSDYSNEKPFTGFEAFYAAEDVDECRT 125
Query: 123 CGGHLQAQDYKRHLYSHARYGH------------------------------------DN 146
G D+ H Y Y
Sbjct: 126 SLGDSVPCDHYCHXYLGGYYCSCRVGYILHQNKHTCSALCSGQVFTGRSGFLSSPEYPQP 185
Query: 147 YGKSMDCDWTIEAEPGKNVHLTFL-TFDIESNKD--CEYDYVEVYSGLDSSVSQASYGRF 203
Y K C + I E G ++ L F+ +FD+E + + C YD +++ + YG F
Sbjct: 186 YPKLSSCAYNIRLEEGFSITLDFVESFDVEMHPEAQCPYDSLKIQTDKR------EYGPF 239
Query: 204 CGTTVALKFQS 214
CG T+ + ++
Sbjct: 240 CGKTLPPRIET 250
Score = 139 bits (352), Expect = 2e-40
Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 7/129 (5%)
Query: 1 NGHDCKEGGCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQE-FELEP 59
N H C T +G + +P +P YP C ++ G I L F E F++E
Sbjct: 157 NKHTCSALCSGQVFTGRSGFLSSPEYPQPYPKLSSCAYNIRLEEGFSITLDFVESFDVEM 216
Query: 60 HQ--TCAYDHVVMYDGDSPDSLTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIA 117
H C YD + + G FCG LP I T SN++ + F +D S G+
Sbjct: 217 HPEAQCPYDSLKIQTDKR----EYGPFCGKTLPPRIETDSNKVTITFTTDESGNHTGWKI 272
Query: 118 THTTVCGGH 126
+T+ H
Sbjct: 273 HYTSTAQPH 281
Score = 76.9 bits (189), Expect = 8e-17
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Query: 145 DNYGKSMDCDWTIEAEPGKNVHLTFLTFDIESNKDCEYDYVEVYSGLDSSVSQASYGRFC 204
+ YG D WT+ A PG + L F F++E + CEYD+V++ SG C
Sbjct: 18 EKYGNHQDRSWTLTAPPGFRLRLYFTHFNLELSYRCEYDFVKLTSGTKVL------ATLC 71
Query: 205 GTTVALKFQSFRDLRIMTSVHMIMLR 230
G ++ + + + +
Sbjct: 72 GQESTDTERAPGNDTFYSLGPSLKVT 97
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting,
mannan-binding protein, complement, ficolins complement
pathway, mannose- binding lectin; HET: NAG BMA MAN;
4.20A {Homo sapiens}
Length = 361
Score = 160 bits (407), Expect = 8e-48
Identities = 63/255 (24%), Positives = 97/255 (38%), Gaps = 58/255 (22%)
Query: 12 YEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVVMY 71
E+ G I++P +PD YPS E W+ T G RIKL F F LE C YD+V +
Sbjct: 3 VELNNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESSYLCEYDYVKVE 62
Query: 72 DGDSPDSLTLGRFCGIKLPYP----IITGSNQLYMMFKSDASVQRK--GFIATHTTVCGG 125
D + GR P +++ + + + F+SD S + + GF A + V
Sbjct: 63 TEDQVLATFCGRETTDTEQTPGQEVVLSPGSFMSITFRSDFSNEERFTGFDAHYMAVDVD 122
Query: 126 HLQAQDYKRHLYSHARYGH----------------------------------------- 144
+ ++ + H + +
Sbjct: 123 ECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTCRVECSDNLFTQRTGVITSPD 182
Query: 145 --DNYGKSMDCDWTIEAEPGKNVHLTFL-TFDIESNKD--CEYDYVEVYSGLDSSVSQAS 199
+ Y KS +C +TIE E G V+L F FDIE + + C YDY+++ G
Sbjct: 183 FPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDHPEVPCPYDYIKIKVG------PKV 236
Query: 200 YGRFCGTTVALKFQS 214
G FCG +
Sbjct: 237 LGPFCGEKAPEPIST 251
Score = 147 bits (372), Expect = 1e-42
Identities = 43/186 (23%), Positives = 72/186 (38%), Gaps = 13/186 (6%)
Query: 1 NGHDCKEGGCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQE-FELEP 59
+ C+ T GVI +P+ P+ YP EC++ G + L F++ F++E
Sbjct: 158 DNRTCRVECSDNLFTQRTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIED 217
Query: 60 HQ--TCAYDHVVMYDGDSPDSLTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIA 117
H C YD++ + G LG FCG K P PI T S+ + ++F SD S + +G+
Sbjct: 218 HPEVPCPYDYIKIKVGPK----VLGPFCGEKAPEPISTQSHSVLILFHSDNSGENRGWRL 273
Query: 118 THTTVCGGHLQAQDYKRHLYSHARYGHDNYGKSMDCDWTIEAEPGKNVHLTFLTFDIESN 177
++ + Q + + G V + D
Sbjct: 274 SYRAAGNECPELQPPVHGKIE-----PSQAKYFFKDQVLVSCDTGYKVLKDNVEMDTFQ- 327
Query: 178 KDCEYD 183
+C D
Sbjct: 328 IECLKD 333
>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein, cell
adhesion, extracellular matrix; 2.30A {Homo sapiens}
Length = 149
Score = 151 bits (383), Expect = 1e-46
Identities = 44/139 (31%), Positives = 63/139 (45%), Gaps = 3/139 (2%)
Query: 9 GCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHV 68
C T P + K+P P+ Y + C WH G RI L F +F+LE C D+V
Sbjct: 6 ECGGVFTDPKQIFKSPGFPNEYEDNQICYWHIRLKYGQRIHLSFLDFDLEDDPGCLADYV 65
Query: 69 VMYDGDSPDSLTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATHTTVCGGHLQ 128
+YD +GR+CG +LP II+ N + + F SDASV GF + +
Sbjct: 66 EIYDSYDDVHGFVGRYCGDELPDDIISTGNVMTLKFLSDASVTAGGFQIKYVAMDPVSKS 125
Query: 129 AQDYKRHLYSHARYGHDNY 147
+Q S G+ N+
Sbjct: 126 SQGKNTSTTST---GNKNF 141
Score = 89.0 bits (221), Expect = 2e-22
Identities = 27/103 (26%), Positives = 38/103 (36%), Gaps = 20/103 (19%)
Query: 119 HTTVCGGHLQAQDYKRHLYSHARYGH-------DNYGKSMDCDWTIEAEPGKNVHLTFLT 171
H CGG + Y + C W I + G+ +HL+FL
Sbjct: 3 HAKECGGVF-----------TDPKQIFKSPGFPNEYEDNQICYWHIRLKYGQRIHLSFLD 51
Query: 172 FDIESNKDCEYDYVEVYSGLDSSVSQASYGRFCGTTVALKFQS 214
FD+E + C DYVE+Y GR+CG + S
Sbjct: 52 FDLEDDPGCLADYVEIYDS--YDDVHGFVGRYCGDELPDDIIS 92
>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding
domain, developmental protein, differentiation,
glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}
Length = 460
Score = 158 bits (400), Expect = 6e-46
Identities = 45/199 (22%), Positives = 78/199 (39%), Gaps = 7/199 (3%)
Query: 4 DCKEGGCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEP---- 59
D C T+PNG I++P P+ YP +C + P I L F F+LE
Sbjct: 2 DPGSEDCSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPLQ 61
Query: 60 --HQTCAYDHVVMYDGDSPDSLTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIA 117
C YD + ++DG +G++CG K P + + + L + F +D +V + GF A
Sbjct: 62 VGEGDCKYDWLDIWDGIPHVGPLIGKYCGTKTPSELRSSTGILSLTFHTDMAVAKDGFSA 121
Query: 118 THTTVCGGHLQAQDYKRHLYSHARYGHDNYGKSMDCDWTIEAEPGKNVHLTFLTFDIESN 177
+ V L+ L + + S ++ + L N
Sbjct: 122 RYYLVHQEPLENFQCNVPLGMESGRIANEQ-ISASSTYSDGRWTPQQSRLHGDDNGWTPN 180
Query: 178 KDCEYDYVEVYSGLDSSVS 196
D +Y++V + ++
Sbjct: 181 LDSNKEYLQVDLRFLTMLT 199
Score = 76.3 bits (187), Expect = 4e-16
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 8/70 (11%)
Query: 145 DNYGKSMDCDWTIEAEPGKNVHLTFLTFDIE------SNKDCEYDYVEVYSGLDSSVSQA 198
+ Y ++DC +TI A+P + L FL FD+E DC+YD+++++ G+
Sbjct: 26 EKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPLQVGEGDCKYDWLDIWDGIPHVGPL- 84
Query: 199 SYGRFCGTTV 208
G++CGT
Sbjct: 85 -IGKYCGTKT 93
>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding
site, complex with ethylamine, COMP protein, lectin
pathway of complement; 1.45A {Rattus norvegicus} PDB:
3pob_A 3pof_A 3pog_A 3poi_A 3poe_A
Length = 115
Score = 128 bits (324), Expect = 3e-38
Identities = 34/110 (30%), Positives = 57/110 (51%), Gaps = 7/110 (6%)
Query: 14 ITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQE-FELEPHQ--TCAYDHVVM 70
T G I +P++P+ YP EC + G + L F++ F++E H C YD++ +
Sbjct: 9 FTQRTGTITSPDYPNPYPKSSECSYTIDLEEGFMVTLQFEDIFDIEDHPEVPCPYDYIKI 68
Query: 71 YDGDSPDSLTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATHT 120
G G FCG K P PI T S+ + ++F+SD S + +G+ ++
Sbjct: 69 KAGSK----VWGPFCGEKSPEPISTQSHSIQILFRSDNSGENRGWRLSYR 114
Score = 74.3 bits (183), Expect = 3e-17
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 20/84 (23%)
Query: 145 DNYGKSMDCDWTIEAEPGKNVHLTFL-TFDIESNKD--CEYDYVEVYSGLDSSVSQASYG 201
+ Y KS +C +TI+ E G V L F FDIE + + C YDY+++ +G +G
Sbjct: 23 NPYPKSSECSYTIDLEEGFMVTLQFEDIFDIEDHPEVPCPYDYIKIKAG------SKVWG 76
Query: 202 RFCGTT-----------VALKFQS 214
FCG + + F+S
Sbjct: 77 PFCGEKSPEPISTQSHSIQILFRS 100
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 129 bits (327), Expect = 4e-38
Identities = 37/142 (26%), Positives = 58/142 (40%), Gaps = 7/142 (4%)
Query: 17 PNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVVMYDGDSP 76
G I +PN+P YPS+ E W G+ I L F ++E + CAYD V + GD+
Sbjct: 4 MYGEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIELSENCAYDSVQIISGDTE 63
Query: 77 DSLTLGRFCGIKLPYP----IITGSNQLYMMFKSDASVQRKGFIATHTTVCGGHLQAQDY 132
+ G+ P N+L ++FKSD S + + V + D+
Sbjct: 64 EGRLCGQRSSNNPHSPIVEEFQVPYNKLQVIFKSDFSNEERFTGFAAYYVATDINECTDF 123
Query: 133 KRHLYSHARYGHDNYGKSMDCD 154
SH + + N+ C
Sbjct: 124 VDVPCSH--FCN-NFIGGYFCS 142
Score = 78.3 bits (193), Expect = 3e-18
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 145 DNYGKSMDCDWTIEAEPGKNVHLTFLTFDIESNKDCEYDYVEVYSGLDSSVSQASYGRFC 204
Y ++ W IE G +HL F DIE +++C YD V++ SG G+
Sbjct: 15 QAYPSEVEKSWDIEVPEGYGIHLYFTHLDIELSENCAYDSVQIISGDTEEGRLC--GQRS 72
Query: 205 GTT 207
Sbjct: 73 SNN 75
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 122 bits (308), Expect = 3e-35
Identities = 31/160 (19%), Positives = 56/160 (35%), Gaps = 8/160 (5%)
Query: 9 GCKYEITAP-NGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDH 67
+ P G + +P P Y + +E W T PG+R++L F F+LE C YD
Sbjct: 2 PLGPKWPEPVFGRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLELSHLCEYDF 61
Query: 68 VVMYDGDSPDSLTLGRFCGIKLPYP----IITGSNQLYMMFKSDASVQRKGFIATHTTVC 123
V + G + G+ P + + L + F+SD S ++
Sbjct: 62 VKLSSGAKVLATLCGQESTDTERAPGKDTFYSLGSSLDITFRSDYSNEKPFTGFEAFYAA 121
Query: 124 GGHLQAQDYKRHLYSHARYGHD---NYGKSMDCDWTIEAE 160
+ Q + + H+ + S + +
Sbjct: 122 EDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRN 161
Score = 80.4 bits (198), Expect = 6e-19
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 121 TVCGGHLQAQDYKRHLYSHARYGH-DNYGKSMDCDWTIEAEPGKNVHLTFLTFDIESNKD 179
T G + R L S G Y + WT+ A PG + L F FD+E +
Sbjct: 1 TPLGPKWPEPVFGR-LAS---PGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLELSHL 56
Query: 180 CEYDYVEVYSGLDSSVSQASYGRFCGTT 207
CEYD+V++ SG + V G+ T
Sbjct: 57 CEYDFVKLSSG--AKVLATLCGQESTDT 82
>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal
fluid protein, CUB domain, X-RAY growth factor; 1.90A
{Bos taurus} SCOP: b.23.1.1
Length = 114
Score = 118 bits (299), Expect = 2e-34
Identities = 21/120 (17%), Positives = 42/120 (35%), Gaps = 11/120 (9%)
Query: 6 KEGGCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAY 65
+ C + +GVI T Y K C+W P + +++ Q +L C
Sbjct: 6 RNTNCGGILKEESGVIATY-----YGPKTNCVWTIQMPPEYHVRVSIQYLQLN----CNK 56
Query: 66 DHVVMYDGDSPDSLTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATHTTVCGG 125
+ + + DG P S LG+ C L + + + + + + + +
Sbjct: 57 ESLEIIDG-LPGSPVLGKICEGSLM-DYRSSGSIMTVKYIREPEHPASFYEVLYFQDPQA 114
Score = 78.9 bits (195), Expect = 5e-19
Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 16/91 (17%)
Query: 118 THTTVCGGHLQAQDYKRHLYSHARYGHDNYGKSMDCDWTIEAEPGKNVHLTFLTFDIESN 177
T CGG L+ + + + YG +C WTI+ P +V ++ +
Sbjct: 5 PRNTNCGGILKEE--SGVIAT-------YYGPKTNCVWTIQMPPEYHVRVSIQYLQLN-- 53
Query: 178 KDCEYDYVEVYSGLDSSVSQASYGRFCGTTV 208
C + +E+ GL S G+ C ++
Sbjct: 54 --CNKESLEIIDGLPGS---PVLGKICEGSL 79
>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins,
spermadhesins, CUB domain architecture, complex (seminal
plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Length = 109
Score = 117 bits (295), Expect = 6e-34
Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 12/117 (10%)
Query: 9 GCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHV 68
C +T G I T P EC+W P +++ + L C ++V
Sbjct: 5 ACGGRLTDDYGTIFTYKGPK-----TECVWTLQVDPKYKLLVSIPTLNLT----CGKEYV 55
Query: 69 VMYDGDSPDSLTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATHTTVCGG 125
+ +G +P S +LG+FC + GS+ + + +K D+ + G
Sbjct: 56 EVLEG-APGSKSLGKFCE--GLSILNRGSSGMTVKYKRDSGHPASPYEIIFLRDSQG 109
Score = 71.3 bits (175), Expect = 3e-16
Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 25/101 (24%)
Query: 123 CGGHLQAQDYKRHLYSHARYGHDNYGKSMDCDWTIEAEPGKNVHLTFLTFDIESNKDCEY 182
CGG L D +++ Y +C WT++ +P + ++ T ++ C
Sbjct: 6 CGGRLT--DDYGTIFT---YKGPK----TECVWTLQVDPKYKLLVSIPTLNLT----CGK 52
Query: 183 DYVEVYSGLDSSVSQASYGRFCGT---------TVALKFQS 214
+YVEV G S S G+FC + +K++
Sbjct: 53 EYVEVLEGAPGS---KSLGKFCEGLSILNRGSSGMTVKYKR 90
>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma proteins,
spermadhesins, CUB domain architecture, complex (seminal
plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Length = 116
Score = 117 bits (294), Expect = 8e-34
Identities = 17/117 (14%), Positives = 37/117 (31%), Gaps = 11/117 (9%)
Query: 9 GCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHV 68
C I +G I + C W P ++++ L C ++V
Sbjct: 8 ECGRVIKDTSGSISNTDRQKNL-----CTWTILMKPDQKVRMAIPYLNLA----CGKEYV 58
Query: 69 VMYDGDSPDSLTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATHTTVCGG 125
++DG + G+ C ++ +N + + + + F+ G
Sbjct: 59 EVFDG-LLSGPSYGKLCA-GAAIVFLSTANTMTIKYNRISGNSSSPFLIYFYGSSPG 113
Score = 67.4 bits (165), Expect = 9e-15
Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 26/102 (25%)
Query: 123 CGGHLQAQDYKRHLYSHARYGHDNYGKSMDCDWTIEAEPGKNVHLTFLTFDIESNKDCEY 182
CG ++ D + + N C WTI +P + V + ++ C
Sbjct: 9 CGRVIK--DTSGSISNT--DRQKNL-----CTWTILMKPDQKVRMAIPYLNLA----CGK 55
Query: 183 DYVEVYSGLDSSVSQASYGRFCGT----------TVALKFQS 214
+YVEV+ GL S SYG+ C T+ +K+
Sbjct: 56 EYVEVFDGLLSG---PSYGKLCAGAAIVFLSTANTMTIKYNR 94
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.047
Identities = 29/190 (15%), Positives = 49/190 (25%), Gaps = 68/190 (35%)
Query: 76 PDSLTLGRF-CGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATHTTVCGGHLQAQDYKR 134
P +L+ G + +P + AS ++ F G
Sbjct: 8 PLTLSHGSLEHVLLVP-------TASF----FIASQLQEQFNKILPEPTEG--------- 47
Query: 135 HLYSHARYGHDNYGKSMDCDWTIEAEPGKNVHLT--FLTF---DIESNKDCEYDYVEVYS 189
+ D+ EP L FL + +E +K ++D
Sbjct: 48 -------FAADD-------------EPTTPAELVGKFLGYVSSLVEPSKVGQFD------ 81
Query: 190 GLDSSVSQASYGRF-----CGT---TVALKFQSFRDLRIMTSVHMI----MLRLEMGMPP 237
V F G +A K D ++ + +I R+ P
Sbjct: 82 ----QVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPF 137
Query: 238 DSPIIGNLLR 247
D L R
Sbjct: 138 DKKSNSALFR 147
Score = 31.2 bits (70), Expect = 0.38
Identities = 40/233 (17%), Positives = 67/233 (28%), Gaps = 82/233 (35%)
Query: 48 IKLVFQEFELEPHQTCAY----D-HVVMYDGDSPDSLTLGRFCGI-----------KLPY 91
+ L EFE Y D H + + TL + + K P+
Sbjct: 84 LNLCLTEFE------NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPF 137
Query: 92 PIITGSNQLYMMFKSDASVQRKGFIATHTTVCGGHLQ--AQDY-K--RHLYSHARYGHDN 146
+ S +F++ +A + GG Q DY + R LY
Sbjct: 138 DKKSNSA----LFRA-VGEGNAQLVA----IFGG--QGNTDDYFEELRDLY-------QT 179
Query: 147 YGKSMDCDWTIEAEPGKNVHLTFLTFDIESNKDCEYDYVEVYSGLD--------SSVSQA 198
Y + D + L+ L I + D E + GL+ S+
Sbjct: 180 Y-HVLVGDLIKFSAE----TLSEL---IRTTLDAEKVF---TQGLNILEWLENPSNTPDK 228
Query: 199 SYGRFCGTTVALKFQSFRDLRI-MTS-VH-MIMLRLEMGMPPDSPIIGNLLRI 248
Y ++ I + H ++ +L +G P G L
Sbjct: 229 DY--LLSIPISCPL-------IGVIQLAHYVVTAKL-LGFTP-----GELRSY 266
Score = 28.9 bits (64), Expect = 1.8
Identities = 38/260 (14%), Positives = 64/260 (24%), Gaps = 110/260 (42%)
Query: 35 ECIWHFTTTPGHRI-----KLVFQE-----------FELEPHQTCAYDHVVMYDGDSPDS 78
HF G RI ++F+ F+ + +Y + +
Sbjct: 1671 NLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSY----TFRSEK-GL 1725
Query: 79 LTLGRFCGIKLPY--P-IITGSNQLYMMFKSDASVQRKGFIATHTTVCGGH--------- 126
L+ +F P + + KS + A GH
Sbjct: 1726 LSATQF-------TQPALTLMEKAAFEDLKSKGLIPADATFA-------GHSLGEYAALA 1771
Query: 127 -----LQAQD-----YKR-HLYSHA----RYGHDNYGKSMDCDWTIEAEPGKNVHLTFLT 171
+ + + R A G NYG M I PG+ +
Sbjct: 1772 SLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYG--M-----IAINPGRVA----AS 1820
Query: 172 FDIESNKDCEYDYVEVYSGLDSSVSQASYGRFC---------------GTTVAL------ 210
F E+ + VE V + + G G AL
Sbjct: 1821 FSQEALQYV----VE-------RVGKRT-GWLVEIVNYNVENQQYVAAGDLRALDTVTNV 1868
Query: 211 ----KFQSFRDLRIMTSVHM 226
K Q + + S+ +
Sbjct: 1869 LNFIKLQKIDIIELQKSLSL 1888
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal,
PSI, MCSG, structural genomics, midwest center
structural genomics; 1.40A {Staphylococcus epidermidis}
Length = 107
Score = 28.1 bits (63), Expect = 1.1
Identities = 5/28 (17%), Positives = 8/28 (28%), Gaps = 3/28 (10%)
Query: 193 SSVSQASYGRFCGTTVALKFQSFRDLRI 220
S S R + F +L+
Sbjct: 45 LETSSTSIIRLS---KKVTPGGFNELKT 69
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide
oxidoreductase, C(4A)-peroxyflavin, crystallography,
conformational dynamics; HET: FAD; 2.00A {Streptococcus
pyogenes} PDB: 2bcp_A* 2bc1_A*
Length = 490
Score = 27.1 bits (61), Expect = 6.3
Identities = 7/52 (13%), Positives = 13/52 (25%), Gaps = 13/52 (25%)
Query: 1 NGHDCKEGGCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVF 52
K G +T P++ + IK+V+
Sbjct: 387 TLEKAKRLGFDAAVT----EYTDNQKPEFIEHGNFPVT---------IKIVY 425
>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, transferase; 2.40A {Neisseria meningitidis}
Length = 794
Score = 27.2 bits (60), Expect = 6.9
Identities = 27/189 (14%), Positives = 59/189 (31%), Gaps = 26/189 (13%)
Query: 75 SPDSLTLGRFCGIKLPYPIIT---GSNQLYMMFKSDASVQRKGFIATHTTVCGGHLQAQD 131
+PD + + I+ GS + M+F A +V + +D
Sbjct: 235 NPDEFYVFKPTLKAGKPAILRKTMGSKHIKMIFTDKAE--------AGKSVTNVDVPEED 286
Query: 132 YKRHLYSH------ARYG---HDNYGKSMDCDWTIEAEPGKNVHLT---FLTFDIESNKD 179
R + A Y +YG+ MD +W + GK +++ T + +
Sbjct: 287 RNRFSITDEEITELAHYALTIEKHYGRPMDIEWGRDGLDGK-LYILQARPETVKSQEEGN 345
Query: 180 CEYDYVEVYSGLDSSVSQASYGRFCGTTVALKFQSFRDLRIMTSVHMIMLRLEMGMPPDS 239
+ + G+ G + ++ + + +++ M P
Sbjct: 346 RNLRRFAINGDKTVLCEGRAIGQKVGQGKVRLIKDASEMDSVEAGDVLVTD--MTDPDWE 403
Query: 240 PIIGNLLRI 248
P++ I
Sbjct: 404 PVMKRASAI 412
>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein,
molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB:
1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A*
1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A*
1uvc_A*
Length = 93
Score = 25.2 bits (55), Expect = 9.3
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 79 LTLGRFCGIKLPYPIITGSN 98
++ CG+ +PY I T ++
Sbjct: 69 ASIPSKCGVSIPYTISTSTD 88
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.444
Gapped
Lambda K H
0.267 0.0563 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,901,460
Number of extensions: 222053
Number of successful extensions: 521
Number of sequences better than 10.0: 1
Number of HSP's gapped: 435
Number of HSP's successfully gapped: 55
Length of query: 248
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 157
Effective length of database: 4,160,982
Effective search space: 653274174
Effective search space used: 653274174
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.7 bits)