RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8444
(248 letters)
>d2qqma3 b.23.1.1 (A:156-263) Mannose-binding protein associated
serine protease 2, MASP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 108
Score = 88.1 bits (217), Expect = 4e-23
Identities = 37/108 (34%), Positives = 58/108 (53%), Gaps = 6/108 (5%)
Query: 19 GVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQ------TCAYDHVVMYD 72
GVIK+P P+ YP+ EC + I L F+ F+LEP C YD + ++D
Sbjct: 1 GVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLEPDSNPPGGMFCRYDRLEIWD 60
Query: 73 GDSPDSLTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATHT 120
G +GR+CG K P I + S L M+F +D+++ ++GF A ++
Sbjct: 61 GFPDVGPHIGRYCGQKTPGRIRSSSGILSMVFYTDSAIAKEGFSANYS 108
Score = 37.2 bits (85), Expect = 3e-04
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 145 DNYGKSMDCDWTIEAEPGKNVHLTFLTFDIESN------KDCEYDYVEVYSGLDSSVSQA 198
+ Y S++C + + A + L F +FD+E + C YD +E++ G
Sbjct: 10 EKYPNSLECTYIVFAPKMSEIILEFESFDLEPDSNPPGGMFCRYDRLEIWDGFPDVGPH- 68
Query: 199 SYGRFCGTTVALKFQS 214
GR+CG + +S
Sbjct: 69 -IGRYCGQKTPGRIRS 83
>d1szba1 b.23.1.1 (A:3-123) Mannose-binding protein associated
serine protease 2, MASP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 121
Score = 87.2 bits (215), Expect = 1e-22
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 6/112 (5%)
Query: 17 PNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVVMYDGDSP 76
G + +P P Y + +E W T PG+R++L F F+LE C YD V + G
Sbjct: 9 VFGRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLELSHLCEYDFVKLSSGAKV 68
Query: 77 DSLTLGRFCGIKLPYP----IITGSNQLYMMFKSDASVQR--KGFIATHTTV 122
+ G+ P + + L + F+SD S ++ GF A +
Sbjct: 69 LATLCGQESTDTERAPGKDTFYSLGSSLDITFRSDYSNEKPFTGFEAFYAAE 120
Score = 40.6 bits (94), Expect = 2e-05
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 145 DNYGKSMDCDWTIEAEPGKNVHLTFLTFDIESNKDCEYDYVEVYSGLDSSVSQASYGRFC 204
Y + WT+ A PG + L F FD+E + CEYD+V++ SG + V G+
Sbjct: 20 GEYANDQERRWTLTAPPGYRLRLYFTHFDLELSHLCEYDFVKLSSG--AKVLATLCGQES 77
Query: 205 GTT 207
T
Sbjct: 78 TDT 80
>d1nzia1 b.23.1.1 (A:1-117) Complement C1S component {Human (Homo
sapiens) [TaxId: 9606]}
Length = 117
Score = 85.3 bits (210), Expect = 6e-22
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 6/110 (5%)
Query: 19 GVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVVMYDGDSPDS 78
G I +PN+P YPS+ E W G+ I L F ++E + CAYD V + GD+ +
Sbjct: 6 GEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIELSENCAYDSVQIISGDTEEG 65
Query: 79 LTLGRFCGIKLPYP----IITGSNQLYMMFKSDASVQRK--GFIATHTTV 122
G+ P N+L ++FKSD S + + GF A +
Sbjct: 66 RLCGQRSSNNPHSPIVEEFQVPYNKLQVIFKSDFSNEERFTGFAAYYVAT 115
Score = 38.7 bits (89), Expect = 9e-05
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 145 DNYGKSMDCDWTIEAEPGKNVHLTFLTFDIESNKDCEYDYVEVYSGLDSSVSQASYGRFC 204
Y ++ W IE G +HL F DIE +++C YD V++ SG + G+
Sbjct: 15 QAYPSEVEKSWDIEVPEGYGIHLYFTHLDIELSENCAYDSVQIISG--DTEEGRLCGQRS 72
Query: 205 GTT 207
Sbjct: 73 SNN 75
>d1nt0a2 b.23.1.1 (A:165-278) Mannose-binding protein associated
serine protease 2, MASP2 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 114
Score = 80.7 bits (198), Expect = 3e-20
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 15 TAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQ---EFELEPHQTCAYDHVVMY 71
T +G + +P +P YP C ++ G I L F + E+ P C YD + +
Sbjct: 7 TGRSGFLSSPEYPQPYPKLSSCAYNIRLEEGFSITLDFVESFDVEMHPEAQCPYDSLKIQ 66
Query: 72 DGDSPDSLTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATHTTV 122
FCG LP I T SN++ + F +D S G+ +T+
Sbjct: 67 TDKREYG----PFCGKTLPPRIETDSNKVTITFTTDESGNHTGWKIHYTST 113
Score = 33.8 bits (76), Expect = 0.005
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 145 DNYGKSMDCDWTIEAEPGKNVHLTF---LTFDIESNKDCEYDYVEVY 188
Y K C + I E G ++ L F ++ C YD +++
Sbjct: 20 QPYPKLSSCAYNIRLEEGFSITLDFVESFDVEMHPEAQCPYDSLKIQ 66
>d1sfpa_ b.23.1.1 (A:) Acidic seminal fluid protein (ASFP) {Cow (Bos
taurus) [TaxId: 9913]}
Length = 111
Score = 63.0 bits (152), Expect = 2e-13
Identities = 15/117 (12%), Positives = 35/117 (29%), Gaps = 11/117 (9%)
Query: 6 KEGGCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAY 65
+ C + +GVI T Y K C+W P + +++ Q C
Sbjct: 3 RNTNCGGILKEESGVIATY-----YGPKTNCVWTIQMPPEYHVRVSIQYL----QLNCNK 53
Query: 66 DHVVMYDGDSPDSLTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATHTTV 122
+ + + DG + G + + + + + + + +
Sbjct: 54 ESLEIIDGLPGSPVLGKICEGS--LMDYRSSGSIMTVKYIREPEHPASFYEVLYFQD 108
Score = 26.8 bits (58), Expect = 1.1
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 13/71 (18%)
Query: 120 TTVCGGHLQAQDYKRHLYSHARYGHDNYGKSMDCDWTIEAEPGKNVHLTFLTFDIESNKD 179
T CGG L + YG +C WTI+ P +V ++ + +
Sbjct: 4 NTNCGGIL---------KEESGVIATYYGPKTNCVWTIQMPPEYHVRVSIQYLQL----N 50
Query: 180 CEYDYVEVYSG 190
C + +E+ G
Sbjct: 51 CNKESLEIIDG 61
>d1sppa_ b.23.1.1 (A:) Major seminal plasma glycoprotein PSP-I {Pig
(Sus scrofa) [TaxId: 9823]}
Length = 109
Score = 59.3 bits (142), Expect = 3e-12
Identities = 19/116 (16%), Positives = 38/116 (32%), Gaps = 12/116 (10%)
Query: 10 CKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHVV 69
C +T G I T P EC+W P +++ + + TC ++V
Sbjct: 6 CGGRLTDDYGTIFTYKGPK-----TECVWTLQVDPKYKLLVSIPTL----NLTCGKEYVE 56
Query: 70 MYDGDSPDSLTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATHTTVCGG 125
+ +G + + GS+ + + +K D+ + G
Sbjct: 57 VLEGAPGSKS---LGKFCEGLSILNRGSSGMTVKYKRDSGHPASPYEIIFLRDSQG 109
>d1sppb_ b.23.1.1 (B:) Major seminal plasma glycoprotein PSP-II {Pig
(Sus scrofa) [TaxId: 9823]}
Length = 112
Score = 55.0 bits (131), Expect = 1e-10
Identities = 16/114 (14%), Positives = 35/114 (30%), Gaps = 11/114 (9%)
Query: 9 GCKYEITAPNGVIKTPNHPDYYPSKRECIWHFTTTPGHRIKLVFQEFELEPHQTCAYDHV 68
C I +G I + C W P ++++ + C ++V
Sbjct: 8 ECGRVIKDTSGSISNTDRQKNL-----CTWTILMKPDQKVRMAIPYL----NLACGKEYV 58
Query: 69 VMYDGDSPDSLTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATHTTV 122
++DG G+ C + T +N + + + + F+
Sbjct: 59 EVFDGLLSGPSY-GKLCAGAAIVFLST-ANTMTIKYNRISGNSSSPFLIYFYGS 110
Score = 26.5 bits (57), Expect = 1.5
Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 16/98 (16%)
Query: 123 CGGHLQAQDYKRHLYSHARYGHDNYGKSMDCDWTIEAEPGKNVHLTFLTFDIESNKDCEY 182
CG ++ + + + K++ C WTI +P + V + N C
Sbjct: 9 CGRVIKD--------TSGSISNTDRQKNL-CTWTILMKPDQKVRMAIPYL----NLACGK 55
Query: 183 DYVEVYSGLDSSVSQASYGRFCGTTVALKFQSFRDLRI 220
+YVEV+ D +S SYG+ C + + + I
Sbjct: 56 EYVEVF---DGLLSGPSYGKLCAGAAIVFLSTANTMTI 90
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 25.6 bits (56), Expect = 5.1
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 45 GHRIKLVFQEFELEPHQTCAYDHVVM 70
R+ +VFQ F L H T ++V+
Sbjct: 88 RTRLTMVFQHFNLWSHMT-VLENVME 112
>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein
(ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}
Length = 93
Score = 24.4 bits (53), Expect = 5.4
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 79 LTLGRFCGIKLPYPIITGSN 98
++ CG+ +PY I T ++
Sbjct: 69 ASIPSKCGVSIPYTISTSTD 88
>d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli
[TaxId: 562]}
Length = 336
Score = 25.7 bits (55), Expect = 5.8
Identities = 16/171 (9%), Positives = 43/171 (25%), Gaps = 8/171 (4%)
Query: 83 RFCGIKLPYPIITGS------NQLYMMFKSDASVQRKGFIATHTTVCGGHLQAQDYKRHL 136
G+ P+ + + + G + +
Sbjct: 48 NCMGLTFKNPLGLAAGLDKDGECIDALGAMGFGSIEIGTVTPRPQPGNDKPRLFRLVDAE 107
Query: 137 YSHARYGHDNYGKSMDCDWTIEAEPGKNVHLTFLTFDIESNKDCEYDYVEVYSGLDSSVS 196
R G +N G + +A + + + + DY+ + +
Sbjct: 108 GLINRMGFNNLGVDNLVENVKKAHYDGVLGINIGKNKDTPVEQGKDDYLICMEKIYAYAG 167
Query: 197 QASYGRFCGTTVALKFQSFRD--LRIMTSVHMIMLRLEMGMPPDSPIIGNL 245
+ T L+ + + ++T++ L+ PI +
Sbjct: 168 YIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKI 218
>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein
(ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId:
4513]}
Length = 91
Score = 24.4 bits (53), Expect = 6.2
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 79 LTLGRFCGIKLPYPIITGSN 98
++ C + +PY I +
Sbjct: 67 ASIPSKCNVNVPYTISPDID 86
>d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 367
Score = 25.3 bits (54), Expect = 7.3
Identities = 21/172 (12%), Positives = 43/172 (25%), Gaps = 12/172 (6%)
Query: 83 RFCGIKLPYPIITGS------NQLYMMFKSDASVQRKGFIATHTTVCGGHLQAQDYKRHL 136
R G K P+ + + ++K G + +
Sbjct: 53 RVLGHKFRNPVGIAAGFDKHGEAVDGLYKMGFGFVEIGSVTPKPQEGNPRPRVFRLPEDQ 112
Query: 137 YSHARYGHDNYGKSM---DCDWTIEAEPGKNVHLTFLTFDIESNKD---CEYDYVEVYSG 190
RYG +++G S+ + + L ++ NK DY E
Sbjct: 113 AVINRYGFNSHGLSVVEHRLRARQQKQAKLTEDGLPLGVNLGKNKTSVDAAEDYAEGVRV 172
Query: 191 LDSSVSQASYGRFCGTTVALKFQSFRDLRIMTSVHMIMLRLEMGMPPDSPII 242
L T L+ + ++ R + ++
Sbjct: 173 LGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVL 224
>d1kbla3 d.142.1.5 (A:2-376) Pyruvate phosphate dikinase, N-terminal
domain {Clostridium symbiosum [TaxId: 1512]}
Length = 375
Score = 25.3 bits (54), Expect = 7.9
Identities = 11/91 (12%), Positives = 19/91 (20%), Gaps = 1/91 (1%)
Query: 68 VVMYDGDSPDSLTLGRFCGIKLPYPIITGSNQLYMMFKSDASVQRKGFIATHTTVCGGHL 127
V T G + + G +
Sbjct: 237 NVQTMVFGNKGETSGTGVAFTRNPSTGEKGIYGEYLINAQGEDVVAGVRTPQPITQLEND 296
Query: 128 QAQDYKRHLYSHARYGHDNYGKSMDCDWTIE 158
YK+ A ++ D ++TIE
Sbjct: 297 MPDCYKQ-FMDLAMKLEKHFRDMQDMEFTIE 326
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.444
Gapped
Lambda K H
0.267 0.0449 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 993,524
Number of extensions: 45304
Number of successful extensions: 146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 26
Length of query: 248
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 165
Effective length of database: 1,268,006
Effective search space: 209220990
Effective search space used: 209220990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.5 bits)