Query psy8447
Match_columns 229
No_of_seqs 149 out of 2148
Neff 9.9
Searched_HMMs 46136
Date Fri Aug 16 19:05:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8447.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8447hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0044|consensus 100.0 9.1E-28 2E-32 179.2 17.1 176 38-213 9-187 (193)
2 KOG0034|consensus 99.9 1.2E-23 2.5E-28 157.1 17.0 158 11-211 25-185 (187)
3 COG5126 FRQ1 Ca2+-binding prot 99.9 6.6E-24 1.4E-28 153.3 14.7 122 72-204 37-159 (160)
4 KOG0027|consensus 99.9 3.6E-20 7.9E-25 136.0 15.0 121 71-201 24-149 (151)
5 KOG0038|consensus 99.8 1.7E-19 3.7E-24 125.5 14.1 170 7-210 16-186 (189)
6 PTZ00183 centrin; Provisional 99.8 1E-18 2.2E-23 129.3 16.2 123 72-204 34-157 (158)
7 PTZ00184 calmodulin; Provision 99.8 4.6E-18 9.9E-23 124.3 16.1 120 72-201 28-148 (149)
8 KOG0028|consensus 99.7 1.1E-16 2.5E-21 113.4 14.5 140 53-202 28-171 (172)
9 KOG0037|consensus 99.7 1.6E-16 3.5E-21 118.5 11.6 151 55-220 57-207 (221)
10 KOG0031|consensus 99.6 5.1E-14 1.1E-18 99.3 15.1 136 53-202 27-166 (171)
11 KOG0037|consensus 99.5 1.2E-12 2.5E-17 98.0 14.3 159 18-200 56-219 (221)
12 KOG0030|consensus 99.5 9.6E-13 2.1E-17 91.4 11.7 129 61-200 17-150 (152)
13 KOG0036|consensus 99.5 1.5E-12 3.2E-17 105.7 13.4 134 57-204 16-149 (463)
14 KOG0027|consensus 99.5 1.5E-12 3.3E-17 95.5 11.6 125 94-222 10-140 (151)
15 COG5126 FRQ1 Ca2+-binding prot 99.4 2.2E-12 4.8E-17 93.6 12.1 145 8-155 9-155 (160)
16 KOG0044|consensus 99.4 1.1E-12 2.4E-17 98.4 10.8 142 10-156 20-175 (193)
17 PF13499 EF-hand_7: EF-hand do 99.4 5.9E-13 1.3E-17 83.7 7.8 66 129-199 1-66 (66)
18 PTZ00183 centrin; Provisional 99.4 4.3E-12 9.3E-17 93.6 11.3 121 94-222 19-145 (158)
19 PTZ00184 calmodulin; Provision 99.4 8.8E-12 1.9E-16 90.9 12.4 121 94-222 13-139 (149)
20 PLN02964 phosphatidylserine de 99.3 7E-11 1.5E-15 103.5 12.9 80 77-156 161-243 (644)
21 cd05022 S-100A13 S-100A13: S-1 99.2 7.1E-11 1.5E-15 78.1 6.7 69 128-204 8-78 (89)
22 KOG0028|consensus 99.1 7.9E-10 1.7E-14 78.9 10.6 148 7-156 21-170 (172)
23 PF13499 EF-hand_7: EF-hand do 99.1 1.5E-10 3.3E-15 72.6 6.4 61 94-154 2-66 (66)
24 PLN02964 phosphatidylserine de 99.1 3.5E-10 7.5E-15 99.2 10.7 127 63-202 112-244 (644)
25 KOG0034|consensus 99.1 1.2E-09 2.5E-14 82.0 10.7 100 57-156 68-175 (187)
26 cd05026 S-100Z S-100Z: S-100Z 99.1 8.3E-10 1.8E-14 74.0 8.1 72 128-203 10-83 (93)
27 KOG2562|consensus 99.1 1.1E-09 2.4E-14 90.5 10.3 142 52-197 272-420 (493)
28 KOG4223|consensus 99.0 7.3E-10 1.6E-14 87.8 7.4 134 55-197 160-301 (325)
29 KOG4223|consensus 99.0 4.1E-09 8.8E-14 83.6 11.6 137 57-203 79-230 (325)
30 cd05027 S-100B S-100B: S-100B 99.0 8.7E-10 1.9E-14 72.9 6.2 71 128-202 8-80 (88)
31 cd05031 S-100A10_like S-100A10 99.0 2.3E-09 5E-14 72.1 7.7 76 128-207 8-85 (94)
32 cd05025 S-100A1 S-100A1: S-100 99.0 4.2E-09 9.1E-14 70.5 8.7 75 128-207 9-86 (92)
33 KOG4666|consensus 98.9 1.2E-09 2.5E-14 86.5 5.4 160 41-215 209-373 (412)
34 cd00252 SPARC_EC SPARC_EC; ext 98.9 4.1E-09 8.9E-14 73.1 7.5 61 127-200 47-107 (116)
35 KOG0377|consensus 98.9 1.5E-08 3.3E-13 83.4 11.7 151 44-201 453-615 (631)
36 cd05023 S-100A11 S-100A11: S-1 98.9 8.5E-09 1.9E-13 68.3 7.9 71 128-202 9-81 (89)
37 cd00213 S-100 S-100: S-100 dom 98.9 1.4E-08 3E-13 67.4 8.6 72 128-203 8-81 (88)
38 cd00052 EH Eps15 homology doma 98.9 6.7E-09 1.4E-13 65.1 6.3 63 131-204 2-64 (67)
39 cd05022 S-100A13 S-100A13: S-1 98.9 1.3E-08 2.8E-13 67.3 7.5 64 94-157 10-76 (89)
40 cd05029 S-100A6 S-100A6: S-100 98.8 9.6E-09 2.1E-13 68.0 5.7 68 129-202 11-80 (88)
41 cd05027 S-100B S-100B: S-100B 98.8 6.5E-08 1.4E-12 64.0 9.4 64 94-157 10-80 (88)
42 smart00027 EH Eps15 homology d 98.8 2.7E-08 5.9E-13 67.1 6.9 66 128-204 10-75 (96)
43 cd00051 EFh EF-hand, calcium b 98.8 1.8E-08 3.8E-13 61.6 5.3 61 130-199 2-62 (63)
44 KOG4251|consensus 98.8 2.4E-08 5.3E-13 76.2 7.0 187 1-197 123-341 (362)
45 cd00051 EFh EF-hand, calcium b 98.8 5.2E-08 1.1E-12 59.5 7.4 61 94-154 2-62 (63)
46 PF13833 EF-hand_8: EF-hand do 98.8 4.4E-08 9.6E-13 58.7 6.7 51 106-156 2-53 (54)
47 KOG0751|consensus 98.8 1.5E-07 3.3E-12 78.6 11.8 148 53-202 31-208 (694)
48 KOG0036|consensus 98.7 1.5E-07 3.3E-12 77.0 11.2 96 91-200 13-109 (463)
49 cd05026 S-100Z S-100Z: S-100Z 98.7 1.3E-07 2.9E-12 63.3 8.9 65 94-158 12-83 (93)
50 smart00027 EH Eps15 homology d 98.7 1.4E-07 3.1E-12 63.6 8.9 63 94-158 12-74 (96)
51 PF13833 EF-hand_8: EF-hand do 98.7 1.8E-08 3.8E-13 60.4 3.4 53 141-201 1-53 (54)
52 KOG0030|consensus 98.7 3.1E-07 6.7E-12 64.2 9.8 104 92-201 11-116 (152)
53 cd05031 S-100A10_like S-100A10 98.7 1.4E-07 3.1E-12 63.3 8.1 65 94-158 10-81 (94)
54 cd00052 EH Eps15 homology doma 98.7 1.4E-07 3.1E-12 59.0 7.6 61 95-157 2-62 (67)
55 cd05025 S-100A1 S-100A1: S-100 98.7 2.3E-07 4.9E-12 62.1 8.4 65 94-158 11-82 (92)
56 KOG0031|consensus 98.7 9.5E-07 2.1E-11 62.9 11.7 114 94-219 34-153 (171)
57 KOG2643|consensus 98.6 3.1E-07 6.6E-12 75.8 9.8 147 64-229 327-477 (489)
58 cd00252 SPARC_EC SPARC_EC; ext 98.6 2.9E-07 6.4E-12 63.9 7.8 57 94-154 50-106 (116)
59 PF00036 EF-hand_1: EF hand; 98.6 7.1E-08 1.5E-12 49.7 3.5 27 130-156 2-28 (29)
60 PF14658 EF-hand_9: EF-hand do 98.6 1.7E-07 3.7E-12 57.5 5.4 62 132-201 2-64 (66)
61 cd05030 calgranulins Calgranul 98.6 4.8E-07 1E-11 59.9 7.9 70 129-202 9-80 (88)
62 cd05029 S-100A6 S-100A6: S-100 98.6 5.6E-07 1.2E-11 59.5 8.0 64 94-157 12-80 (88)
63 cd00213 S-100 S-100: S-100 dom 98.6 5.3E-07 1.1E-11 59.8 7.8 64 94-157 10-80 (88)
64 cd05023 S-100A11 S-100A11: S-1 98.5 1.1E-06 2.3E-11 58.3 8.1 64 94-157 11-81 (89)
65 KOG0038|consensus 98.4 1.8E-06 3.9E-11 60.9 7.7 99 58-156 74-177 (189)
66 KOG4251|consensus 98.4 1.9E-06 4.2E-11 66.0 7.4 142 58-200 101-308 (362)
67 cd05024 S-100A10 S-100A10: A s 98.3 4.3E-06 9.2E-11 55.0 7.8 70 129-203 9-78 (91)
68 PF00036 EF-hand_1: EF hand; 98.3 1.1E-06 2.3E-11 45.2 3.9 27 94-120 2-28 (29)
69 PF13405 EF-hand_6: EF-hand do 98.3 9.3E-07 2E-11 46.4 3.4 27 129-155 1-27 (31)
70 PF14658 EF-hand_9: EF-hand do 98.3 5.1E-06 1.1E-10 51.0 6.7 62 96-157 2-65 (66)
71 KOG0041|consensus 98.3 3.4E-06 7.4E-11 62.7 6.8 65 128-201 99-163 (244)
72 KOG2643|consensus 98.2 6.3E-06 1.4E-10 68.2 8.5 120 67-202 210-347 (489)
73 cd05030 calgranulins Calgranul 98.2 1.2E-05 2.5E-10 53.3 7.2 64 94-157 10-80 (88)
74 PRK12309 transaldolase/EF-hand 98.2 1.1E-05 2.3E-10 67.7 8.6 57 88-157 330-386 (391)
75 cd05024 S-100A10 S-100A10: A s 98.1 1.1E-05 2.5E-10 53.0 6.7 64 58-121 8-77 (91)
76 KOG0377|consensus 98.1 1.3E-05 2.9E-10 66.4 8.0 63 94-156 549-615 (631)
77 KOG4065|consensus 98.1 1.4E-05 3E-10 54.1 6.6 67 132-198 71-142 (144)
78 KOG0041|consensus 98.1 3.7E-05 8.1E-10 57.3 9.4 102 51-153 92-200 (244)
79 KOG4347|consensus 98.1 9E-06 2E-10 70.4 6.4 141 7-150 454-612 (671)
80 PF13202 EF-hand_5: EF hand; P 98.0 6.2E-06 1.4E-10 40.8 3.0 23 131-153 2-24 (25)
81 PRK12309 transaldolase/EF-hand 98.0 1.3E-05 2.9E-10 67.2 6.8 55 125-201 331-385 (391)
82 PF14788 EF-hand_10: EF hand; 98.0 2.9E-05 6.3E-10 45.0 5.9 50 108-157 1-50 (51)
83 KOG0751|consensus 98.0 0.00018 3.9E-09 60.7 12.6 101 55-158 73-209 (694)
84 KOG0040|consensus 98.0 0.00027 6E-09 66.6 14.4 139 49-200 2244-2397(2399)
85 PF13202 EF-hand_5: EF hand; P 97.9 1.5E-05 3.2E-10 39.4 3.0 24 176-199 2-25 (25)
86 PF10591 SPARC_Ca_bdg: Secrete 97.8 1.8E-05 3.9E-10 54.8 2.5 66 122-198 48-113 (113)
87 KOG0040|consensus 97.7 9.3E-05 2E-09 69.6 6.4 78 124-203 2246-2326(2399)
88 PF12763 EF-hand_4: Cytoskelet 97.6 0.00038 8.3E-09 47.4 6.6 63 127-201 9-71 (104)
89 PF13405 EF-hand_6: EF-hand do 97.5 0.00019 4.1E-09 37.4 3.8 26 94-119 2-27 (31)
90 PF12763 EF-hand_4: Cytoskelet 97.4 0.00069 1.5E-08 46.1 6.3 59 95-156 13-71 (104)
91 KOG2562|consensus 97.4 0.00075 1.6E-08 56.7 7.2 91 98-200 284-378 (493)
92 PF14788 EF-hand_10: EF hand; 97.3 0.0011 2.4E-08 38.4 5.5 49 72-121 2-50 (51)
93 KOG1029|consensus 97.1 0.0079 1.7E-07 53.7 10.7 135 52-200 10-256 (1118)
94 PF10591 SPARC_Ca_bdg: Secrete 97.1 0.00034 7.4E-09 48.5 2.0 61 90-152 52-112 (113)
95 smart00054 EFh EF-hand, calciu 97.0 0.00081 1.7E-08 33.4 2.9 26 130-155 2-27 (29)
96 smart00054 EFh EF-hand, calciu 96.6 0.0038 8.2E-08 30.8 3.2 27 175-201 2-28 (29)
97 PF09069 EF-hand_3: EF-hand; 96.5 0.014 3E-07 38.5 6.2 77 127-206 2-80 (90)
98 KOG0046|consensus 96.5 0.012 2.6E-07 50.5 7.3 65 129-200 20-84 (627)
99 KOG0169|consensus 96.4 0.28 6.1E-06 44.2 15.5 139 56-202 137-275 (746)
100 KOG0046|consensus 96.0 0.032 7E-07 47.9 7.5 76 9-121 9-86 (627)
101 KOG4666|consensus 96.0 0.021 4.5E-07 46.2 6.0 99 57-156 261-359 (412)
102 PF09279 EF-hand_like: Phospho 95.9 0.037 7.9E-07 35.9 6.0 67 129-203 1-71 (83)
103 KOG3866|consensus 95.8 0.019 4.1E-07 46.0 5.0 70 131-200 247-323 (442)
104 KOG0169|consensus 95.6 0.17 3.6E-06 45.6 10.4 68 91-158 135-202 (746)
105 KOG0039|consensus 95.5 0.046 1E-06 49.4 6.9 94 106-207 2-95 (646)
106 KOG4578|consensus 95.4 0.0088 1.9E-07 48.3 1.8 69 128-204 333-401 (421)
107 PF09279 EF-hand_like: Phospho 95.4 0.059 1.3E-06 34.9 5.5 61 94-155 2-68 (83)
108 PLN02952 phosphoinositide phos 95.2 0.29 6.2E-06 43.7 10.7 94 105-202 13-111 (599)
109 KOG3555|consensus 95.2 0.053 1.1E-06 44.2 5.7 63 127-202 249-311 (434)
110 PF05042 Caleosin: Caleosin re 95.2 0.4 8.8E-06 35.5 9.8 69 126-199 94-164 (174)
111 KOG4065|consensus 95.0 0.082 1.8E-06 36.1 5.2 66 88-153 63-142 (144)
112 KOG4286|consensus 94.0 0.82 1.8E-05 41.4 10.5 160 41-208 403-587 (966)
113 KOG3555|consensus 92.1 0.43 9.3E-06 39.1 5.6 59 94-156 252-310 (434)
114 KOG4578|consensus 91.4 0.14 3.1E-06 41.5 2.2 64 93-156 334-398 (421)
115 KOG2243|consensus 90.8 0.86 1.9E-05 44.2 6.7 82 133-224 4062-4151(5019)
116 PF05042 Caleosin: Caleosin re 90.2 0.26 5.6E-06 36.5 2.4 123 94-216 9-139 (174)
117 KOG0035|consensus 90.1 1.9 4.2E-05 40.1 8.3 97 55-152 747-848 (890)
118 KOG4347|consensus 89.9 0.91 2E-05 40.4 5.9 78 108-195 534-612 (671)
119 KOG1707|consensus 89.3 3.4 7.5E-05 36.6 8.9 69 128-207 315-385 (625)
120 KOG1955|consensus 88.9 1.4 3.1E-05 38.0 6.2 70 50-122 223-295 (737)
121 PF05517 p25-alpha: p25-alpha 88.8 2.2 4.7E-05 31.3 6.5 49 72-121 19-70 (154)
122 KOG1265|consensus 87.9 3.9 8.5E-05 38.0 8.6 92 108-202 204-300 (1189)
123 KOG3866|consensus 87.5 3.2 6.9E-05 33.7 7.1 84 53-156 225-324 (442)
124 KOG0035|consensus 87.4 1.5 3.3E-05 40.7 5.8 71 128-202 747-817 (890)
125 KOG1955|consensus 87.3 1.2 2.7E-05 38.4 4.9 61 129-200 232-292 (737)
126 PF09068 EF-hand_2: EF hand; 87.3 2.1 4.5E-05 30.3 5.4 26 130-155 99-124 (127)
127 KOG2557|consensus 86.4 4.1 8.8E-05 34.0 7.2 108 106-215 72-190 (427)
128 PF14513 DAG_kinase_N: Diacylg 86.4 0.52 1.1E-05 33.8 1.9 37 105-141 45-82 (138)
129 KOG1029|consensus 85.4 1.3 2.8E-05 40.4 4.2 61 94-156 197-257 (1118)
130 PF12174 RST: RCD1-SRO-TAF4 (R 82.9 1.9 4.2E-05 26.9 3.2 50 107-159 7-56 (70)
131 PF05517 p25-alpha: p25-alpha 82.2 6.7 0.00015 28.7 6.3 64 131-200 2-68 (154)
132 KOG0998|consensus 81.9 0.96 2.1E-05 42.4 2.2 178 11-202 121-346 (847)
133 cd00086 homeodomain Homeodomai 81.9 3.8 8.2E-05 24.0 4.2 46 11-63 5-50 (59)
134 KOG4301|consensus 81.7 13 0.00028 30.8 8.2 153 46-204 44-218 (434)
135 KOG0042|consensus 81.2 1.8 3.9E-05 38.2 3.4 64 129-201 594-657 (680)
136 PF00046 Homeobox: Homeobox do 81.0 2.3 5E-05 25.0 3.0 45 11-62 5-49 (57)
137 PF08726 EFhand_Ca_insen: Ca2+ 80.2 2.4 5.1E-05 26.5 2.8 29 126-155 4-32 (69)
138 PLN02952 phosphoinositide phos 78.5 27 0.00059 31.6 9.9 85 70-155 15-109 (599)
139 KOG1264|consensus 77.8 28 0.00061 32.6 9.7 149 52-203 137-295 (1267)
140 PF00404 Dockerin_1: Dockerin 77.7 4 8.6E-05 19.0 2.5 17 138-154 1-17 (21)
141 PF14513 DAG_kinase_N: Diacylg 76.9 12 0.00027 26.8 6.1 65 37-101 7-78 (138)
142 PF08414 NADPH_Ox: Respiratory 76.2 3.5 7.5E-05 27.6 2.9 56 63-122 35-94 (100)
143 KOG1707|consensus 75.6 45 0.00098 30.0 10.2 33 173-205 315-347 (625)
144 PF09068 EF-hand_2: EF hand; 74.1 26 0.00057 24.7 7.1 73 128-200 41-124 (127)
145 smart00389 HOX Homeodomain. DN 73.9 6.3 0.00014 22.8 3.5 46 11-63 5-50 (56)
146 KOG4004|consensus 71.7 1.3 2.9E-05 33.5 0.1 58 132-200 191-249 (259)
147 PLN02223 phosphoinositide phos 68.6 31 0.00068 30.7 7.8 76 126-202 14-93 (537)
148 KOG0488|consensus 67.2 8 0.00017 31.8 3.7 47 10-63 176-222 (309)
149 TIGR01565 homeo_ZF_HD homeobox 65.8 5.5 0.00012 23.9 1.9 50 10-62 5-54 (58)
150 KOG1265|consensus 65.6 1.3E+02 0.0028 28.8 13.7 80 72-155 205-298 (1189)
151 PLN02230 phosphoinositide phos 63.6 48 0.001 30.0 8.1 74 126-202 27-103 (598)
152 KOG0042|consensus 63.1 26 0.00056 31.3 6.1 74 50-124 585-661 (680)
153 TIGR01848 PHA_reg_PhaR polyhyd 61.3 23 0.00049 24.1 4.4 67 136-202 11-78 (107)
154 KOG0493|consensus 60.4 9.6 0.00021 30.2 2.8 47 10-63 250-296 (342)
155 PLN02228 Phosphoinositide phos 56.4 60 0.0013 29.2 7.4 65 52-118 21-90 (567)
156 PLN02222 phosphoinositide phos 54.6 55 0.0012 29.6 6.9 68 51-120 21-90 (581)
157 KOG2243|consensus 53.7 30 0.00064 34.6 5.2 58 97-155 4062-4119(5019)
158 cd02977 ArsC_family Arsenate R 53.6 28 0.00061 23.3 4.1 54 143-206 34-90 (105)
159 KOG0998|consensus 53.3 4.7 0.0001 38.0 0.2 62 94-157 285-346 (847)
160 KOG4004|consensus 50.9 7.3 0.00016 29.6 0.8 48 105-154 201-248 (259)
161 PF00427 PBS_linker_poly: Phyc 50.9 88 0.0019 22.2 6.2 26 187-212 42-67 (131)
162 PF02671 PAH: Paired amphipath 50.5 15 0.00033 20.6 2.0 27 188-214 17-47 (47)
163 PLN02228 Phosphoinositide phos 50.5 83 0.0018 28.4 7.3 69 125-202 21-93 (567)
164 cd07313 terB_like_2 tellurium 48.1 79 0.0017 20.9 6.9 53 95-149 40-93 (104)
165 PLN02222 phosphoinositide phos 46.4 1E+02 0.0022 28.0 7.2 65 89-156 23-90 (581)
166 PF12174 RST: RCD1-SRO-TAF4 (R 45.4 69 0.0015 20.0 4.5 47 72-122 9-55 (70)
167 PF11116 DUF2624: Protein of u 44.9 86 0.0019 20.4 7.4 51 107-157 13-63 (85)
168 cd07978 TAF13 The TATA Binding 44.3 92 0.002 20.6 5.8 23 185-207 50-72 (92)
169 cd03035 ArsC_Yffb Arsenate Red 44.1 24 0.00052 23.9 2.5 55 144-207 35-89 (105)
170 PF07879 PHB_acc_N: PHB/PHA ac 43.3 15 0.00033 22.4 1.2 22 135-156 10-31 (64)
171 PF02761 Cbl_N2: CBL proto-onc 43.1 93 0.002 20.3 7.3 63 94-157 9-71 (85)
172 PF11829 DUF3349: Protein of u 41.9 99 0.0021 20.7 5.0 61 109-173 20-80 (96)
173 KOG0850|consensus 41.3 48 0.001 25.9 3.9 51 6-63 122-172 (245)
174 KOG0842|consensus 39.7 19 0.00041 29.5 1.7 46 11-63 158-203 (307)
175 COG4359 Uncharacterized conser 39.6 1.2E+02 0.0027 23.1 5.7 79 104-202 9-88 (220)
176 KOG2871|consensus 39.6 19 0.0004 30.3 1.6 33 125-157 306-338 (449)
177 KOG1264|consensus 39.5 1.1E+02 0.0023 29.0 6.3 150 4-155 128-292 (1267)
178 PF04876 Tenui_NCP: Tenuivirus 38.8 1.5E+02 0.0033 21.5 6.8 72 104-207 95-166 (175)
179 COG3793 TerB Tellurite resista 38.0 1.6E+02 0.0034 21.4 6.0 64 142-205 38-102 (144)
180 PLN02230 phosphoinositide phos 37.6 1.8E+02 0.0039 26.5 7.4 32 53-85 27-58 (598)
181 PRK06049 rpl30p 50S ribosomal 37.4 1.2E+02 0.0027 22.2 5.4 48 143-202 56-103 (154)
182 KOG0843|consensus 36.7 60 0.0013 24.4 3.7 47 10-63 106-152 (197)
183 COG2344 AT-rich DNA-binding pr 36.6 1.9E+02 0.0042 22.1 6.6 69 11-84 5-78 (211)
184 PF08414 NADPH_Ox: Respiratory 36.1 1.4E+02 0.0029 20.2 5.7 59 94-157 32-93 (100)
185 cd03032 ArsC_Spx Arsenate Redu 35.9 1E+02 0.0022 21.0 4.7 57 143-207 35-91 (115)
186 PF05872 DUF853: Bacterial pro 34.7 3.3E+02 0.0071 24.1 9.0 113 72-205 106-230 (502)
187 PF08672 APC2: Anaphase promot 33.6 1.1E+02 0.0024 18.4 4.5 33 124-157 11-45 (60)
188 KOG4718|consensus 33.2 45 0.00098 25.7 2.6 58 7-64 87-146 (235)
189 cd07313 terB_like_2 tellurium 33.0 1.4E+02 0.0031 19.6 6.3 62 50-113 32-93 (104)
190 cd03034 ArsC_ArsC Arsenate Red 33.0 85 0.0018 21.4 3.9 54 143-207 34-90 (112)
191 PRK10026 arsenate reductase; P 32.9 65 0.0014 23.2 3.3 56 144-207 38-93 (141)
192 PF07492 Trehalase_Ca-bi: Neut 32.5 11 0.00024 19.2 -0.5 19 176-194 2-20 (30)
193 PF01023 S_100: S-100/ICaBP ty 31.9 97 0.0021 17.2 3.7 27 130-156 8-36 (44)
194 PHA02335 hypothetical protein 31.5 63 0.0014 21.9 2.8 42 175-218 12-53 (118)
195 PF03960 ArsC: ArsC family; I 31.5 34 0.00074 23.2 1.7 57 144-207 32-88 (110)
196 PF12238 MSA-2c: Merozoite sur 31.4 1.8E+02 0.0038 22.5 5.5 88 72-159 28-116 (205)
197 PF05920 Homeobox_KN: Homeobox 31.1 25 0.00055 19.2 0.8 25 38-62 11-35 (40)
198 KOG2301|consensus 31.0 49 0.0011 33.7 3.2 68 127-200 1416-1483(1592)
199 KOG4286|consensus 30.6 4E+02 0.0087 25.1 8.3 107 85-201 413-533 (966)
200 PF11363 DUF3164: Protein of u 30.1 2.1E+02 0.0046 21.8 5.9 57 77-137 105-161 (195)
201 cd06404 PB1_aPKC PB1 domain is 30.0 1.4E+02 0.0031 19.3 4.2 21 125-145 56-76 (83)
202 PF08976 DUF1880: Domain of un 29.3 52 0.0011 22.8 2.2 31 89-120 5-35 (118)
203 TIGR02395 rpoN_sigma RNA polym 28.5 1E+02 0.0022 26.7 4.4 67 12-83 90-156 (429)
204 TIGR00014 arsC arsenate reduct 28.1 1E+02 0.0022 21.0 3.6 58 143-207 34-91 (114)
205 PF09873 DUF2100: Uncharacteri 28.0 2E+02 0.0044 22.2 5.3 19 104-122 37-55 (215)
206 PRK05932 RNA polymerase factor 28.0 1.2E+02 0.0026 26.6 4.7 67 12-83 115-181 (455)
207 cd08324 CARD_NOD1_CARD4 Caspas 27.9 1.5E+02 0.0032 19.3 3.9 59 141-213 26-84 (85)
208 cd01657 Ribosomal_L7_archeal_e 27.2 2.4E+02 0.0052 20.7 5.6 54 142-204 54-110 (159)
209 PF09373 PMBR: Pseudomurein-bi 26.8 79 0.0017 16.3 2.2 17 141-157 1-17 (33)
210 PRK13344 spxA transcriptional 26.4 94 0.002 22.0 3.2 63 136-207 29-91 (132)
211 PF07105 DUF1367: Protein of u 26.0 3E+02 0.0066 21.0 6.0 18 131-149 55-72 (196)
212 KOG3442|consensus 25.8 1.5E+02 0.0032 20.9 3.9 43 142-190 53-95 (132)
213 TIGR01309 L30P_arch 50S riboso 25.2 1.9E+02 0.0041 21.1 4.7 48 142-201 53-100 (152)
214 PF09851 SHOCT: Short C-termin 24.9 1.1E+02 0.0023 15.5 3.7 25 130-157 5-29 (31)
215 cd03033 ArsC_15kD Arsenate Red 24.5 1.2E+02 0.0025 20.9 3.3 29 178-207 61-89 (113)
216 KOG4403|consensus 24.1 1.4E+02 0.0031 25.8 4.2 28 129-156 69-96 (575)
217 PRK12559 transcriptional regul 23.8 1.2E+02 0.0026 21.4 3.4 57 143-207 35-91 (131)
218 PRK03968 DNA primase large sub 23.8 4.6E+02 0.01 22.4 8.2 19 104-122 173-191 (399)
219 PF02269 TFIID-18kDa: Transcri 23.7 1.2E+02 0.0025 20.1 3.1 40 174-213 39-78 (93)
220 PF09824 ArsR: ArsR transcript 23.6 3.1E+02 0.0066 20.2 5.4 76 125-212 69-144 (160)
221 PRK01655 spxA transcriptional 23.0 1.7E+02 0.0036 20.6 4.0 57 143-207 35-91 (131)
222 cd08327 CARD_RAIDD Caspase act 22.6 2.2E+02 0.0048 18.9 4.2 56 141-210 32-87 (94)
223 PF04876 Tenui_NCP: Tenuivirus 22.6 3.1E+02 0.0068 20.0 7.0 10 23-32 18-27 (175)
224 TIGR01616 nitro_assoc nitrogen 22.4 1.5E+02 0.0033 20.7 3.7 29 178-207 62-90 (126)
225 PF09862 DUF2089: Protein of u 22.3 2E+02 0.0043 19.9 4.0 22 175-199 91-112 (113)
226 TIGR03573 WbuX N-acetyl sugar 21.8 1.5E+02 0.0033 24.7 4.2 43 142-199 300-342 (343)
227 PF03556 Cullin_binding: Culli 21.7 2.8E+02 0.0061 19.1 5.6 87 98-199 30-116 (117)
228 KOG0039|consensus 21.6 2.5E+02 0.0054 25.9 5.7 78 72-156 4-89 (646)
229 PRK14067 exodeoxyribonuclease 21.6 2.3E+02 0.0051 18.1 4.4 45 174-221 15-59 (80)
230 PF03979 Sigma70_r1_1: Sigma-7 21.4 1.7E+02 0.0037 18.6 3.5 15 141-155 18-32 (82)
231 PF12588 PSDC: Phophatidylseri 21.2 3.3E+02 0.0071 19.7 5.8 54 170-223 17-94 (141)
232 cd08330 CARD_ASC_NALP1 Caspase 21.2 2E+02 0.0044 18.4 3.8 53 141-207 26-79 (82)
No 1
>KOG0044|consensus
Probab=99.96 E-value=9.1e-28 Score=179.15 Aligned_cols=176 Identities=30% Similarity=0.476 Sum_probs=160.4
Q ss_pred CCCCchhhhHhhcCCChhHHHHHHhccCccCCCC-CCHHHHHHHHhhhcCCCcHHHHHHHHHHHHccCCCCceeHHHHHH
Q psy8447 38 PISTSTPVVVQVSGLPPSNVTERYKGFSPFSFQG-LDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVL 116 (229)
Q Consensus 38 ~~~~~~~~~~~~~~l~~~~~~~l~~~f~~~d~~~-i~~~ef~~~l~~~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~ 116 (229)
..+..+..+.+.+.+++.++..||+.|...++.+ ++..+|+.++...++......++..+|+.||.|++|.|+|.||+.
T Consensus 9 ~~~~~~e~l~~~t~f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~ 88 (193)
T KOG0044|consen 9 LQPESLEQLVQQTKFSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFIC 88 (193)
T ss_pred CCcHHHHHHHHhcCCCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHH
Confidence 3455678889999999999999999999999877 999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCC--CChHHHHHHHHHHHHHcCCCCCCcccHHH
Q psy8447 117 GLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDE--DPDEGVRDLVELALRKMDYDKDGKISFQD 194 (229)
Q Consensus 117 ~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~dg~Is~~e 194 (229)
+++.+.++..+++++++|++||.||+|+|+++|+..++..+........ ..+...++.+..+|+.+|.|+||.||++|
T Consensus 89 als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~ee 168 (193)
T KOG0044|consen 89 ALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEE 168 (193)
T ss_pred HHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHH
Confidence 9999999999999999999999999999999999999998765443311 23556777899999999999999999999
Q ss_pred HHHHHhcChHHHHHhcccC
Q psy8447 195 FQQSVTDEPLLLEAFGQCL 213 (229)
Q Consensus 195 f~~~~~~~~~~~~~~~~~~ 213 (229)
|...+...|.+++.+++.+
T Consensus 169 f~~~~~~d~~i~~~l~~~~ 187 (193)
T KOG0044|consen 169 FIEGCKADPSILRALEQDP 187 (193)
T ss_pred HHHHhhhCHHHHHHhhhcc
Confidence 9999999999999998776
No 2
>KOG0034|consensus
Probab=99.92 E-value=1.2e-23 Score=157.15 Aligned_cols=158 Identities=34% Similarity=0.508 Sum_probs=134.9
Q ss_pred CcCcHHHHHHHHHHHHHHhhc-CCCCCCCCCCchhhhHhhcCCChhHHHHHHhccCccCCCCCCHHHHHHHHhhhcCCCc
Q psy8447 11 PLSFRQEVETLCKIFKKLLNS-SSNAGVPISTSTPVVVQVSGLPPSNVTERYKGFSPFSFQGLDRVVFRELLHNTFDLVT 89 (229)
Q Consensus 11 ~~~~~~~i~~l~~~f~~l~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~f~~~d~~~i~~~ef~~~l~~~~~~~~ 89 (229)
+.|+..||..|+.+|.+++.. ..|. |+..+|..+.. ..
T Consensus 25 ~~fs~~EI~~L~~rF~kl~~~~~~g~------------------------------------lt~eef~~i~~-----~~ 63 (187)
T KOG0034|consen 25 TQFSANEIERLYERFKKLDRNNGDGY------------------------------------LTKEEFLSIPE-----LA 63 (187)
T ss_pred cccCHHHHHHHHHHHHHhccccccCc------------------------------------cCHHHHHHHHH-----Hh
Confidence 347888888888888888876 4443 88999999984 34
Q ss_pred HHHHHHHHHHHHccCCCCc-eeHHHHHHHHHhhccCChHH-HHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCC
Q psy8447 90 EEILMERIFCAFDRLCDGV-IHLDEWVLGLSCFLRGTNEE-LIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDP 167 (229)
Q Consensus 90 ~~~~~~~lf~~~d~~~~g~-I~~~ef~~~~~~~~~~~~~~-~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~ 167 (229)
...+..++++.|+.+++|. |+|++|+.++..+......+ +++.+|++||.+++|+|+++|+..++..+.+..... +
T Consensus 64 ~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~--~ 141 (187)
T KOG0034|consen 64 LNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDM--S 141 (187)
T ss_pred cCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcc--h
Confidence 4455789999999999888 99999999999998765555 999999999999999999999999999887643332 6
Q ss_pred hHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcChHHHHHhcc
Q psy8447 168 DEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAFGQ 211 (229)
Q Consensus 168 ~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~~~~~~~~~~ 211 (229)
++.++++++..+.++|.++||.||++||.+++.+.|.+.+.++.
T Consensus 142 ~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P~~~~~m~~ 185 (187)
T KOG0034|consen 142 DEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQPDLLEKMTI 185 (187)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCccHHHHcCC
Confidence 88999999999999999999999999999999999999987764
No 3
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.92 E-value=6.6e-24 Score=153.26 Aligned_cols=122 Identities=27% Similarity=0.461 Sum_probs=106.8
Q ss_pred CCHHHHHHHHhhhcCCCcHHHHHHHHHHHHccCCCCceeHHHHHHHHHhhc-cCChHHHHHHHHHHhcCCCCCcccHHHH
Q psy8447 72 LDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFL-RGTNEELIKFTFLIYDLNNDGFITREEM 150 (229)
Q Consensus 72 i~~~ef~~~l~~~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~-~~~~~~~~~~~F~~~D~~~~G~I~~~e~ 150 (229)
|+..+|..+++.++..++..+ +..+|..+|. +++.|+|.+|+.++.... ...++++++++|+.||.|++|+|+..|+
T Consensus 37 I~~~el~~ilr~lg~~~s~~e-i~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL 114 (160)
T COG5126 37 IDRNELGKILRSLGFNPSEAE-INKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGEL 114 (160)
T ss_pred CcHHHHHHHHHHcCCCCcHHH-HHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHH
Confidence 999999999997766555555 8999999999 999999999999999988 5677899999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcChH
Q psy8447 151 FQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPL 204 (229)
Q Consensus 151 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~~~ 204 (229)
+.+++.++...+ ++ .++.+++.+|.+++|.|+|++|.+.+...|.
T Consensus 115 ~~vl~~lge~~~-----de----ev~~ll~~~d~d~dG~i~~~eF~~~~~~~~~ 159 (160)
T COG5126 115 RRVLKSLGERLS-----DE----EVEKLLKEYDEDGDGEIDYEEFKKLIKDSPT 159 (160)
T ss_pred HHHHHhhcccCC-----HH----HHHHHHHhcCCCCCceEeHHHHHHHHhccCC
Confidence 999997755443 22 3788999999999999999999998877664
No 4
>KOG0027|consensus
Probab=99.85 E-value=3.6e-20 Score=135.97 Aligned_cols=121 Identities=22% Similarity=0.334 Sum_probs=106.9
Q ss_pred CCCHHHHHHHHhhhcCCCcHHHHHHHHHHHHccCCCCceeHHHHHHHHHhhccCCh-----HHHHHHHHHHhcCCCCCcc
Q psy8447 71 GLDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTN-----EELIKFTFLIYDLNNDGFI 145 (229)
Q Consensus 71 ~i~~~ef~~~l~~~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~~~-----~~~~~~~F~~~D~~~~G~I 145 (229)
.|+..++..+++.++..++..+ +..++..+|.+++|.|++.+|+.++........ .+.++.+|+.||.+++|+|
T Consensus 24 ~i~~~el~~~lr~lg~~~t~~e-l~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~I 102 (151)
T KOG0027|consen 24 KISVEELGAVLRSLGQNPTEEE-LRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFI 102 (151)
T ss_pred cccHHHHHHHHHHcCCCCCHHH-HHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcC
Confidence 3999999999999999877777 799999999999999999999999998765432 4589999999999999999
Q ss_pred cHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhc
Q psy8447 146 TREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTD 201 (229)
Q Consensus 146 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~ 201 (229)
+..|++.++..++.+.. .+.+..+++.+|.++||.|+|++|+.++..
T Consensus 103 s~~el~~~l~~lg~~~~---------~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 103 SASELKKVLTSLGEKLT---------DEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred cHHHHHHHHHHhCCcCC---------HHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 99999999999876543 223888999999999999999999998865
No 5
>KOG0038|consensus
Probab=99.84 E-value=1.7e-19 Score=125.53 Aligned_cols=170 Identities=24% Similarity=0.377 Sum_probs=134.8
Q ss_pred hhccCcCcHHHHHHHHHHHHHHhhcCCCCCCCCCCchhhhHhhcCCChhHHHHHHhccCccCCCCCCHHHHHHHHhhhcC
Q psy8447 7 FQLLPLSFRQEVETLCKIFKKLLNSSSNAGVPISTSTPVVVQVSGLPPSNVTERYKGFSPFSFQGLDRVVFRELLHNTFD 86 (229)
Q Consensus 7 ~~~~~~~~~~~i~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~f~~~d~~~i~~~ef~~~l~~~~~ 86 (229)
|+.||.||..+|..++.+|+.+.+...+. ...- ...+ .-++..+....+ +
T Consensus 16 YQDCTFFtrKdIlrl~~Rf~~L~P~lVP~----~~~~------~~~~---------------~v~vp~e~i~kM-----P 65 (189)
T KOG0038|consen 16 YQDCTFFTRKDILRLHKRFYELAPHLVPT----DMTG------NRPP---------------IVKVPFELIEKM-----P 65 (189)
T ss_pred hcccccccHHHHHHHHHHHHHhCcccccc----cccC------CCCC---------------ceeecHHHHhhC-----h
Confidence 67899999999999999999999877643 1100 0000 001332222222 2
Q ss_pred CCcHHHHHHHHHHHHccCCCCceeHHHHHHHHHhhccCChHH-HHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCC
Q psy8447 87 LVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEE-LIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDE 165 (229)
Q Consensus 87 ~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~-~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~ 165 (229)
.+....+-++|...|..|+.|.++|++|+.+++.++...+.+ ++..+|+.||-|++++|...++...+..+- ..+
T Consensus 66 ELkenpfk~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lT----r~e 141 (189)
T KOG0038|consen 66 ELKENPFKRRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLT----RDE 141 (189)
T ss_pred hhhcChHHHHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHh----hcc
Confidence 244455678899999999999999999999999998766654 789999999999999999999999998763 455
Q ss_pred CChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcChHHHHHhc
Q psy8447 166 DPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAFG 210 (229)
Q Consensus 166 ~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~~~~~~~~~ 210 (229)
.+++.+.-+++.++.+.|.++||++++.||..++.+.|+++..|.
T Consensus 142 Ls~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~raPDFlsTFH 186 (189)
T KOG0038|consen 142 LSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILRAPDFLSTFH 186 (189)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhCcchHhhhe
Confidence 577788889999999999999999999999999999999988764
No 6
>PTZ00183 centrin; Provisional
Probab=99.82 E-value=1e-18 Score=129.26 Aligned_cols=123 Identities=17% Similarity=0.213 Sum_probs=103.5
Q ss_pred CCHHHHHHHHhhhcCCCcHHHHHHHHHHHHccCCCCceeHHHHHHHHHhhc-cCChHHHHHHHHHHhcCCCCCcccHHHH
Q psy8447 72 LDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFL-RGTNEELIKFTFLIYDLNNDGFITREEM 150 (229)
Q Consensus 72 i~~~ef~~~l~~~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~-~~~~~~~~~~~F~~~D~~~~G~I~~~e~ 150 (229)
|+..+|..++..++...+. ..+..+|..+|.+++|.|+|.+|+.++.... .....+.++.+|+.+|.+++|+|+.+||
T Consensus 34 i~~~e~~~~l~~~g~~~~~-~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~ 112 (158)
T PTZ00183 34 IDPKELKVAMRSLGFEPKK-EEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNL 112 (158)
T ss_pred ccHHHHHHHHHHhCCCCCH-HHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHH
Confidence 9999999999987654444 4489999999999999999999999887653 3455678999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcChH
Q psy8447 151 FQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPL 204 (229)
Q Consensus 151 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~~~ 204 (229)
..++..++... ++. .+..++..+|.+++|.|++++|..++...|.
T Consensus 113 ~~~l~~~~~~l-----~~~----~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 157 (158)
T PTZ00183 113 KRVAKELGETI-----TDE----ELQEMIDEADRNGDGEISEEEFYRIMKKTNL 157 (158)
T ss_pred HHHHHHhCCCC-----CHH----HHHHHHHHhCCCCCCcCcHHHHHHHHhcccC
Confidence 99998765322 222 3778999999999999999999999998775
No 7
>PTZ00184 calmodulin; Provisional
Probab=99.80 E-value=4.6e-18 Score=124.34 Aligned_cols=120 Identities=23% Similarity=0.363 Sum_probs=100.1
Q ss_pred CCHHHHHHHHhhhcCCCcHHHHHHHHHHHHccCCCCceeHHHHHHHHHhhcc-CChHHHHHHHHHHhcCCCCCcccHHHH
Q psy8447 72 LDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLR-GTNEELIKFTFLIYDLNNDGFITREEM 150 (229)
Q Consensus 72 i~~~ef~~~l~~~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~-~~~~~~~~~~F~~~D~~~~G~I~~~e~ 150 (229)
|+..+|..++..++..++. +.+..+|+.+|.+++|.|+|++|+.++..... ......+..+|+.||.+++|+|+.+||
T Consensus 28 i~~~e~~~~l~~~~~~~~~-~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~ 106 (149)
T PTZ00184 28 ITTKELGTVMRSLGQNPTE-AELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAEL 106 (149)
T ss_pred CCHHHHHHHHHHhCCCCCH-HHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHH
Confidence 9999999999887665554 44799999999999999999999999887643 355678899999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhc
Q psy8447 151 FQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTD 201 (229)
Q Consensus 151 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~ 201 (229)
..++..++... +.+ .+..++..+|.+++|.|+|+||..++..
T Consensus 107 ~~~l~~~~~~~-----~~~----~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 107 RHVMTNLGEKL-----TDE----EVDEMIREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred HHHHHHHCCCC-----CHH----HHHHHHHhcCCCCCCcCcHHHHHHHHhc
Confidence 99998764322 222 3777899999999999999999998753
No 8
>KOG0028|consensus
Probab=99.75 E-value=1.1e-16 Score=113.38 Aligned_cols=140 Identities=16% Similarity=0.226 Sum_probs=114.4
Q ss_pred ChhHHHHHHhccCccCC---CCCCHHHHHHHHhhhcCCCcHHHHHHHHHHHHccCCCCceeHHHHHHHHHhhc-cCChHH
Q psy8447 53 PPSNVTERYKGFSPFSF---QGLDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFL-RGTNEE 128 (229)
Q Consensus 53 ~~~~~~~l~~~f~~~d~---~~i~~~ef~~~l~~~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~-~~~~~~ 128 (229)
++.+-+.+..+|..++. +.|+..+|.-.++.++..+...+ +..+...+|+++.|.|+|++|+..+.... ...+.+
T Consensus 28 ~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~e-i~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~e 106 (172)
T KOG0028|consen 28 TEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEE-ILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKE 106 (172)
T ss_pred cHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHH-HHHHHHhhhhccCceechHHHHHHHHHHHhccCcHH
Confidence 34343444444444444 44999999999999988777777 67899999999999999999999977654 456889
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcC
Q psy8447 129 LIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDE 202 (229)
Q Consensus 129 ~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~ 202 (229)
+++.+|+.+|.|++|.|+..+|+.+...++... +++. +.+++..+|.++||.|+-++|..+|.+.
T Consensus 107 Ei~~afrl~D~D~~Gkis~~~lkrvakeLgenl-----tD~E----l~eMIeEAd~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 107 EIKKAFRLFDDDKTGKISQRNLKRVAKELGENL-----TDEE----LMEMIEEADRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred HHHHHHHcccccCCCCcCHHHHHHHHHHhCccc-----cHHH----HHHHHHHhcccccccccHHHHHHHHhcC
Confidence 999999999999999999999999999985433 3433 7789999999999999999999998764
No 9
>KOG0037|consensus
Probab=99.71 E-value=1.6e-16 Score=118.55 Aligned_cols=151 Identities=20% Similarity=0.173 Sum_probs=128.0
Q ss_pred hHHHHHHhccCccCCCCCCHHHHHHHHhhhcCCCcHHHHHHHHHHHHccCCCCceeHHHHHHHHHhhccCChHHHHHHHH
Q psy8447 55 SNVTERYKGFSPFSFQGLDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTF 134 (229)
Q Consensus 55 ~~~~~l~~~f~~~d~~~i~~~ef~~~l~~~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~~~~F 134 (229)
.++..++..-+....+.|+..++.+.+.......=..+.++.|+..||.+.+|+|++.||..+|..+ ..++.+|
T Consensus 57 ~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i------~~Wr~vF 130 (221)
T KOG0037|consen 57 PQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI------NQWRNVF 130 (221)
T ss_pred HHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH------HHHHHHH
Confidence 4555555555555555699999999999665544445558999999999999999999999999988 6799999
Q ss_pred HHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcChHHHHHhcccCC
Q psy8447 135 LIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAFGQCLP 214 (229)
Q Consensus 135 ~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~~~~~~~~~~~~~ 214 (229)
+.||.|++|.|+..|++.+|..++.+.+ + +..+.+++.+|..+.|.|.+++|++++...+.+.+.|....+
T Consensus 131 ~~~D~D~SG~I~~sEL~~Al~~~Gy~Ls-----p----q~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~lt~~Fr~~D~ 201 (221)
T KOG0037|consen 131 RTYDRDRSGTIDSSELRQALTQLGYRLS-----P----QFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQRLTEAFRRRDT 201 (221)
T ss_pred HhcccCCCCcccHHHHHHHHHHcCcCCC-----H----HHHHHHHHHhccccCCceeHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999987654 2 247889999998779999999999999999999999999988
Q ss_pred ChHHHH
Q psy8447 215 SDAARQ 220 (229)
Q Consensus 215 ~~~~~~ 220 (229)
..+|..
T Consensus 202 ~q~G~i 207 (221)
T KOG0037|consen 202 AQQGSI 207 (221)
T ss_pred ccceeE
Confidence 776655
No 10
>KOG0031|consensus
Probab=99.62 E-value=5.1e-14 Score=99.29 Aligned_cols=136 Identities=21% Similarity=0.302 Sum_probs=108.2
Q ss_pred ChhHHHHHHhccCccCCCC---CCHHHHHHHHhhhcCCCcHHHHHHHHHHHHccCCCCceeHHHHHHHHHhhcc-CChHH
Q psy8447 53 PPSNVTERYKGFSPFSFQG---LDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLR-GTNEE 128 (229)
Q Consensus 53 ~~~~~~~l~~~f~~~d~~~---i~~~ef~~~l~~~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~-~~~~~ 128 (229)
+..+++++.++|...|.+. |+..+++.++..++...+.++ +..++.. ..|-|+|.-|+.++..... ..+++
T Consensus 27 ~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~e-lDaM~~E----a~gPINft~FLTmfGekL~gtdpe~ 101 (171)
T KOG0031|consen 27 DQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEE-LDAMMKE----APGPINFTVFLTMFGEKLNGTDPEE 101 (171)
T ss_pred hHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHH-HHHHHHh----CCCCeeHHHHHHHHHHHhcCCCHHH
Confidence 4445555555555555443 999999999999998755555 6766665 6889999999999887665 46778
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcC
Q psy8447 129 LIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDE 202 (229)
Q Consensus 129 ~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~ 202 (229)
.+..+|+.||.++.|.|..+.++.+|...+-+. +++. ++.+++.+-.+..|.|.|..|..++.+.
T Consensus 102 ~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~-----~~eE----V~~m~r~~p~d~~G~~dy~~~~~~ithG 166 (171)
T KOG0031|consen 102 VILNAFKTFDDEGSGKIDEDYLRELLTTMGDRF-----TDEE----VDEMYREAPIDKKGNFDYKAFTYIITHG 166 (171)
T ss_pred HHHHHHHhcCccCCCccCHHHHHHHHHHhcccC-----CHHH----HHHHHHhCCcccCCceeHHHHHHHHHcc
Confidence 899999999999999999999999998875443 3332 7889999988899999999999998754
No 11
>KOG0037|consensus
Probab=99.50 E-value=1.2e-12 Score=98.04 Aligned_cols=159 Identities=18% Similarity=0.171 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCchhhhHh---hcCCChhHHHHHHhccCccCCCCCCHHHHHHHHhhhcCCCcHHHHH
Q psy8447 18 VETLCKIFKKLLNSSSNAGVPISTSTPVVVQ---VSGLPPSNVTERYKGFSPFSFQGLDRVVFRELLHNTFDLVTEEILM 94 (229)
Q Consensus 18 i~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~l~~~f~~~d~~~i~~~ef~~~l~~~~~~~~~~~~~ 94 (229)
-..+...|...+.++++. +...+++.... -..++.+.+.-+...|+....+.|++.||..+...+.. +
T Consensus 56 ~~~~~~~f~~vD~d~sg~--i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~-------W 126 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGR--ILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQ-------W 126 (221)
T ss_pred cHHHHHHHHhhCcccccc--ccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHH-------H
Confidence 346778899999888876 66666665533 35688999999999999998888999999999887532 7
Q ss_pred HHHHHHHccCCCCceeHHHHHHHHHhhccCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHH
Q psy8447 95 ERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDL 174 (229)
Q Consensus 95 ~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 174 (229)
+.+|+.+|+|++|+|+..|+..++..+.-..+.+-...+++.||..++|.|..++|.+.+-.+- .
T Consensus 127 r~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~---------------~ 191 (221)
T KOG0037|consen 127 RNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQ---------------R 191 (221)
T ss_pred HHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHH---------------H
Confidence 8999999999999999999999999999889999999999999999999999999999986552 2
Q ss_pred HHHHHHHcCCCCCCc--ccHHHHHHHHh
Q psy8447 175 VELALRKMDYDKDGK--ISFQDFQQSVT 200 (229)
Q Consensus 175 ~~~~~~~~d~~~dg~--Is~~ef~~~~~ 200 (229)
+..+|+..|++.+|. |+|++|+.+..
T Consensus 192 lt~~Fr~~D~~q~G~i~~~y~dfl~~t~ 219 (221)
T KOG0037|consen 192 LTEAFRRRDTAQQGSITISYDDFLQMTM 219 (221)
T ss_pred HHHHHHHhccccceeEEEeHHHHHHHhh
Confidence 567999999999985 79999988643
No 12
>KOG0030|consensus
Probab=99.48 E-value=9.6e-13 Score=91.37 Aligned_cols=129 Identities=15% Similarity=0.134 Sum_probs=97.1
Q ss_pred HhccCccCCCCCCHHHHHHHHhhhcCCCcHHHHHHHHHHHHccC--CCCceeHHHHHHHHHhhccC---ChHHHHHHHHH
Q psy8447 61 YKGFSPFSFQGLDRVVFRELLHNTFDLVTEEILMERIFCAFDRL--CDGVIHLDEWVLGLSCFLRG---TNEELIKFTFL 135 (229)
Q Consensus 61 ~~~f~~~d~~~i~~~ef~~~l~~~~~~~~~~~~~~~lf~~~d~~--~~g~I~~~ef~~~~~~~~~~---~~~~~~~~~F~ 135 (229)
+..|+....++|+-.+...+++.++..++..+ +.+....++++ +-.+|+|++|+.++..+.+. -+-+..-.-.+
T Consensus 17 F~lfD~~gD~ki~~~q~gdvlRalG~nPT~ae-V~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~edfvegLr 95 (152)
T KOG0030|consen 17 FLLFDRTGDGKISGSQVGDVLRALGQNPTNAE-VLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYEDFVEGLR 95 (152)
T ss_pred HHHHhccCcccccHHHHHHHHHHhcCCCcHHH-HHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHHHHHHHHH
Confidence 33333333334888899999999998888877 45555666555 44789999999999988764 33456677889
Q ss_pred HhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHh
Q psy8447 136 IYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVT 200 (229)
Q Consensus 136 ~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~ 200 (229)
.||++++|.|...|++++|..+|.++. ++. ++.++.-. .|++|.|.|++|++-+.
T Consensus 96 vFDkeg~G~i~~aeLRhvLttlGekl~-----eeE----Ve~Llag~-eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 96 VFDKEGNGTIMGAELRHVLTTLGEKLT-----EEE----VEELLAGQ-EDSNGCINYEAFVKHIM 150 (152)
T ss_pred hhcccCCcceeHHHHHHHHHHHHhhcc-----HHH----HHHHHccc-cccCCcCcHHHHHHHHh
Confidence 999999999999999999999976653 222 56666665 47889999999998654
No 13
>KOG0036|consensus
Probab=99.47 E-value=1.5e-12 Score=105.71 Aligned_cols=134 Identities=20% Similarity=0.203 Sum_probs=109.8
Q ss_pred HHHHHhccCccCCCCCCHHHHHHHHhhhcCCCcHHHHHHHHHHHHccCCCCceeHHHHHHHHHhhccCChHHHHHHHHHH
Q psy8447 57 VTERYKGFSPFSFQGLDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLI 136 (229)
Q Consensus 57 ~~~l~~~f~~~d~~~i~~~ef~~~l~~~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~~~~F~~ 136 (229)
+..+++.|+....+.++..++...+..+....+..+.+..+|+..|.|.+|.++|.||...+..- +.++..+|+.
T Consensus 16 ~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~-----E~~l~~~F~~ 90 (463)
T KOG0036|consen 16 IRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK-----ELELYRIFQS 90 (463)
T ss_pred HHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHh-----HHHHHHHHhh
Confidence 33444444443334488888888888876655667778999999999999999999999999753 5688899999
Q ss_pred hcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcChH
Q psy8447 137 YDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPL 204 (229)
Q Consensus 137 ~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~~~ 204 (229)
.|.++||.|+.+|+.+.++.++... +++ .+..+|+.+|+++.+.|+++||...+.-+|.
T Consensus 91 iD~~hdG~i~~~Ei~~~l~~~gi~l-----~de----~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p~ 149 (463)
T KOG0036|consen 91 IDLEHDGKIDPNEIWRYLKDLGIQL-----SDE----KAAKFFEHMDKDGKATIDLEEWRDHLLLYPE 149 (463)
T ss_pred hccccCCccCHHHHHHHHHHhCCcc-----CHH----HHHHHHHHhccCCCeeeccHHHHhhhhcCCh
Confidence 9999999999999999999987643 333 3777999999999999999999999998884
No 14
>KOG0027|consensus
Probab=99.45 E-value=1.5e-12 Score=95.49 Aligned_cols=125 Identities=24% Similarity=0.292 Sum_probs=100.8
Q ss_pred HHHHHHHHccCCCCceeHHHHHHHHHhhccCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHH
Q psy8447 94 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRD 173 (229)
Q Consensus 94 ~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 173 (229)
+..+|..||.+++|.|+-.++..++..+....+...+..+++.+|.+++|.|+.+||..++...+....... ...+
T Consensus 10 l~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~----~~~~ 85 (151)
T KOG0027|consen 10 LKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEE----ASSE 85 (151)
T ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccc----ccHH
Confidence 688999999999999999999999999999999999999999999999999999999999987654322221 1122
Q ss_pred HHHHHHHHcCCCCCCcccHHHHHHHHhcC------hHHHHHhcccCCChHHHHHH
Q psy8447 174 LVELALRKMDYDKDGKISFQDFQQSVTDE------PLLLEAFGQCLPSDAARQSF 222 (229)
Q Consensus 174 ~~~~~~~~~d~~~dg~Is~~ef~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 222 (229)
.+..+|+.+|.+++|.||..|+..+|... +..-+++........|..+|
T Consensus 86 el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f 140 (151)
T KOG0027|consen 86 ELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNF 140 (151)
T ss_pred HHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeH
Confidence 48889999999999999999999998733 23555555555555554433
No 15
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.45 E-value=2.2e-12 Score=93.55 Aligned_cols=145 Identities=17% Similarity=0.212 Sum_probs=129.6
Q ss_pred hccCcCcHHHHHHHHHHHHHHhhcCCCCCCCCCCchhhhHhhcCC--ChhHHHHHHhccCccCCCCCCHHHHHHHHhhhc
Q psy8447 8 QLLPLSFRQEVETLCKIFKKLLNSSSNAGVPISTSTPVVVQVSGL--PPSNVTERYKGFSPFSFQGLDRVVFRELLHNTF 85 (229)
Q Consensus 8 ~~~~~~~~~~i~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~l~~~f~~~d~~~i~~~ef~~~l~~~~ 85 (229)
...+.||+++++.|++.|..++++.+|. +...++..+.+..+. +...+.+++..++. +.+.|++.+|..++....
T Consensus 9 ~~~~~~t~~qi~~lkeaF~l~D~d~~G~--I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~ 85 (160)
T COG5126 9 LTFTQLTEEQIQELKEAFQLFDRDSDGL--IDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKL 85 (160)
T ss_pred hhcccCCHHHHHHHHHHHHHhCcCCCCC--CcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHh
Confidence 4568899999999999999999988887 888888888777765 45888899999988 556699999999999987
Q ss_pred CCCcHHHHHHHHHHHHccCCCCceeHHHHHHHHHhhccCChHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q psy8447 86 DLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 155 (229)
Q Consensus 86 ~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~ 155 (229)
....+.+.+..+|+.||.|++|+|+..+++.++..+....+++++..+++.+|.+++|.|++++|.+.+.
T Consensus 86 ~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~ 155 (160)
T COG5126 86 KRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIK 155 (160)
T ss_pred ccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHh
Confidence 6666666689999999999999999999999999999999999999999999999999999999999874
No 16
>KOG0044|consensus
Probab=99.45 E-value=1.1e-12 Score=98.38 Aligned_cols=142 Identities=20% Similarity=0.104 Sum_probs=111.5
Q ss_pred cCcCcHHHHHHHHHHHHHHhhcCCCCCCCCCCchhhhHhhcCCCh---hHHHHHHhccCccCCCCCCHHHHHHHHhhhcC
Q psy8447 10 LPLSFRQEVETLCKIFKKLLNSSSNAGVPISTSTPVVVQVSGLPP---SNVTERYKGFSPFSFQGLDRVVFRELLHNTFD 86 (229)
Q Consensus 10 ~~~~~~~~i~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~l~~~f~~~d~~~i~~~ef~~~l~~~~~ 86 (229)
.|+|++.+|..+++.|..-|+.+. ....++..+-....+.. .-...+++.|+....+.|++.+|...+.....
T Consensus 20 ~t~f~~~ei~~~Yr~Fk~~cP~G~----~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~r 95 (193)
T KOG0044|consen 20 QTKFSKKEIQQWYRGFKNECPSGR----LTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSR 95 (193)
T ss_pred hcCCCHHHHHHHHHHhcccCCCCc----cCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcC
Confidence 589999999999999998776554 55566777777766533 23445566666655556999999888888766
Q ss_pred CCcHHHHHHHHHHHHccCCCCceeHHHHHHHHHhhcc-----------CChHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q psy8447 87 LVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLR-----------GTNEELIKFTFLIYDLNNDGFITREEMFQLLR 155 (229)
Q Consensus 87 ~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~-----------~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~ 155 (229)
.+.++-+..+|+.+|.|++|.|+++|++.++..+.. ..+++.+..+|..+|.|++|.||.+||.....
T Consensus 96 -Gt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~ 174 (193)
T KOG0044|consen 96 -GTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCK 174 (193)
T ss_pred -CcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhh
Confidence 444455788899999999999999999998887432 23567899999999999999999999999886
Q ss_pred H
Q psy8447 156 N 156 (229)
Q Consensus 156 ~ 156 (229)
+
T Consensus 175 ~ 175 (193)
T KOG0044|consen 175 A 175 (193)
T ss_pred h
Confidence 4
No 17
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.44 E-value=5.9e-13 Score=83.67 Aligned_cols=66 Identities=30% Similarity=0.559 Sum_probs=58.0
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHH
Q psy8447 129 LIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSV 199 (229)
Q Consensus 129 ~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~ 199 (229)
+++.+|+.+|.+++|+|+.+|+..++..++...+ +...++.++.+++.+|.|+||.|+++||..+|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~-----~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMS-----DEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHST-----HHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhccccc-----HHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4789999999999999999999999998864332 55677789999999999999999999999875
No 18
>PTZ00183 centrin; Provisional
Probab=99.40 E-value=4.3e-12 Score=93.62 Aligned_cols=121 Identities=23% Similarity=0.260 Sum_probs=96.3
Q ss_pred HHHHHHHHccCCCCceeHHHHHHHHHhhccCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHH
Q psy8447 94 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRD 173 (229)
Q Consensus 94 ~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 173 (229)
+..+|..+|.+++|.|++.||..++..+........+..+|..+|.+++|.|+..||..++....... ..++
T Consensus 19 ~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~--------~~~~ 90 (158)
T PTZ00183 19 IREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGER--------DPRE 90 (158)
T ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCC--------CcHH
Confidence 67789999999999999999999998876556778899999999999999999999999886542111 1123
Q ss_pred HHHHHHHHcCCCCCCcccHHHHHHHHhcC------hHHHHHhcccCCChHHHHHH
Q psy8447 174 LVELALRKMDYDKDGKISFQDFQQSVTDE------PLLLEAFGQCLPSDAARQSF 222 (229)
Q Consensus 174 ~~~~~~~~~d~~~dg~Is~~ef~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 222 (229)
.++.+|+.+|.+++|.|+.+||..++... ..+..+|......+.|..++
T Consensus 91 ~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~ 145 (158)
T PTZ00183 91 EILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISE 145 (158)
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcH
Confidence 47889999999999999999999998732 23555676666566665543
No 19
>PTZ00184 calmodulin; Provisional
Probab=99.39 E-value=8.8e-12 Score=90.90 Aligned_cols=121 Identities=17% Similarity=0.234 Sum_probs=94.7
Q ss_pred HHHHHHHHccCCCCceeHHHHHHHHHhhccCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHH
Q psy8447 94 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRD 173 (229)
Q Consensus 94 ~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 173 (229)
+...|..+|.+++|.|++++|..++..+......+.+..+|..+|.+++|.|++++|..++....... ...+
T Consensus 13 ~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~--------~~~~ 84 (149)
T PTZ00184 13 FKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDT--------DSEE 84 (149)
T ss_pred HHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCC--------cHHH
Confidence 56789999999999999999999998776666678899999999999999999999999987543211 1223
Q ss_pred HHHHHHHHcCCCCCCcccHHHHHHHHhcC------hHHHHHhcccCCChHHHHHH
Q psy8447 174 LVELALRKMDYDKDGKISFQDFQQSVTDE------PLLLEAFGQCLPSDAARQSF 222 (229)
Q Consensus 174 ~~~~~~~~~d~~~dg~Is~~ef~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 222 (229)
.+..+|+.+|.+++|.|+.++|..++... ..+-.+|......+.|..++
T Consensus 85 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~ 139 (149)
T PTZ00184 85 EIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINY 139 (149)
T ss_pred HHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcH
Confidence 47889999999999999999999988532 33445565554555555443
No 20
>PLN02964 phosphatidylserine decarboxylase
Probab=99.27 E-value=7e-11 Score=103.54 Aligned_cols=80 Identities=23% Similarity=0.222 Sum_probs=68.9
Q ss_pred HHHHHhhhc-CCCcHHH--HHHHHHHHHccCCCCceeHHHHHHHHHhhccCChHHHHHHHHHHhcCCCCCcccHHHHHHH
Q psy8447 77 FRELLHNTF-DLVTEEI--LMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQL 153 (229)
Q Consensus 77 f~~~l~~~~-~~~~~~~--~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~ 153 (229)
+..++..++ ..++..+ +++.+|..+|.+++|.|+|+||+.++..+....+++++..+|+.||.|++|+|+.+||..+
T Consensus 161 Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~v 240 (644)
T PLN02964 161 VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAAL 240 (644)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHH
Confidence 666666666 2444443 4789999999999999999999999998776678889999999999999999999999999
Q ss_pred HHH
Q psy8447 154 LRN 156 (229)
Q Consensus 154 l~~ 156 (229)
+..
T Consensus 241 L~~ 243 (644)
T PLN02964 241 LAL 243 (644)
T ss_pred HHh
Confidence 987
No 21
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.19 E-value=7.1e-11 Score=78.07 Aligned_cols=69 Identities=20% Similarity=0.276 Sum_probs=56.0
Q ss_pred HHHHHHHHHhcC-CCCCcccHHHHHHHHHH-HhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcChH
Q psy8447 128 ELIKFTFLIYDL-NNDGFITREEMFQLLRN-SLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPL 204 (229)
Q Consensus 128 ~~~~~~F~~~D~-~~~G~I~~~e~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~~~ 204 (229)
..+..+|+.||. +++|+|+..|++.++.. ++... ++. +.++.+++.+|.|+||.|+|+||..++.....
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~l-----s~~---~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~ 78 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLL-----KDV---EGLEEKMKNLDVNQDSKLSFEEFWELIGELAK 78 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhc-----cCH---HHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 357889999999 99999999999999988 54322 220 23888999999999999999999998876543
No 22
>KOG0028|consensus
Probab=99.14 E-value=7.9e-10 Score=78.88 Aligned_cols=148 Identities=11% Similarity=0.070 Sum_probs=127.6
Q ss_pred hhccCcCcHHHHHHHHHHHHHHhhcCCCCCCCCCCchhhhHhhcCCC--hhHHHHHHhccCccCCCCCCHHHHHHHHhhh
Q psy8447 7 FQLLPLSFRQEVETLCKIFKKLLNSSSNAGVPISTSTPVVVQVSGLP--PSNVTERYKGFSPFSFQGLDRVVFRELLHNT 84 (229)
Q Consensus 7 ~~~~~~~~~~~i~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~l~~~f~~~d~~~i~~~ef~~~l~~~ 84 (229)
+...+.+++++-+.++..|..++++..|. +...++....+..++. ..++..+...+++...+.|++.+|+..+...
T Consensus 21 ~~~~~~l~~~q~q~i~e~f~lfd~~~~g~--iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k 98 (172)
T KOG0028|consen 21 ASPKSELTEEQKQEIKEAFELFDPDMAGK--IDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVK 98 (172)
T ss_pred CCCCccccHHHHhhHHHHHHhhccCCCCc--ccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHH
Confidence 44567788888899999999999766655 7777777778888876 4888899999998888889999999998776
Q ss_pred cCCCcHHHHHHHHHHHHccCCCCceeHHHHHHHHHhhccCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q psy8447 85 FDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRN 156 (229)
Q Consensus 85 ~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~ 156 (229)
.....+.+.+..+|+.+|-|++|.|++.+|+.+..-+....+++.++.+..-+|.+++|-|+.+||..+++.
T Consensus 99 ~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 99 LGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 554334445899999999999999999999999999999999999999999999999999999999998864
No 23
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.14 E-value=1.5e-10 Score=72.59 Aligned_cols=61 Identities=28% Similarity=0.463 Sum_probs=53.4
Q ss_pred HHHHHHHHccCCCCceeHHHHHHHHHhhccCC----hHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q psy8447 94 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGT----NEELIKFTFLIYDLNNDGFITREEMFQLL 154 (229)
Q Consensus 94 ~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~~----~~~~~~~~F~~~D~~~~G~I~~~e~~~~l 154 (229)
++.+|+.+|.+++|.|+.+||..++..+.... ..+.+..+|+.+|++++|.|+.+||..++
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 57899999999999999999999999987543 33567777999999999999999998864
No 24
>PLN02964 phosphatidylserine decarboxylase
Probab=99.14 E-value=3.5e-10 Score=99.23 Aligned_cols=127 Identities=13% Similarity=0.069 Sum_probs=93.2
Q ss_pred ccCccCCCCCCHHHHHHHHhh--hcCCCcHHHHHHHHHHHHccCCCCceeHHHHHHHHHhhc-cCChHHH---HHHHHHH
Q psy8447 63 GFSPFSFQGLDRVVFRELLHN--TFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFL-RGTNEEL---IKFTFLI 136 (229)
Q Consensus 63 ~f~~~d~~~i~~~ef~~~l~~--~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~-~~~~~~~---~~~~F~~ 136 (229)
.|...+.+.+++.++...... ........+.+..+|..+|+|++|.| +..++..+. ...++.+ ++.+|..
T Consensus 112 ~~~~~~~~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~ 187 (644)
T PLN02964 112 RISVFETNRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAI 187 (644)
T ss_pred EEEEEecCCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 455566666888887766654 11112222336788999999999997 555555554 2334443 8999999
Q ss_pred hcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcC
Q psy8447 137 YDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDE 202 (229)
Q Consensus 137 ~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~ 202 (229)
+|.+++|.|+.+||..++..++.. .++ +.+..+|+.+|.+++|.|+++||..++...
T Consensus 188 ~D~DgdG~IdfdEFl~lL~~lg~~-----~se----EEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 188 VDYDEDGQLSFSEFSDLIKAFGNL-----VAA----NKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred hCCCCCCeEcHHHHHHHHHHhccC-----CCH----HHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 999999999999999999875321 122 237889999999999999999999999875
No 25
>KOG0034|consensus
Probab=99.11 E-value=1.2e-09 Score=82.05 Aligned_cols=100 Identities=21% Similarity=0.210 Sum_probs=85.5
Q ss_pred HHHHHhccCccCCCC-CCHHHHHHHHhhhcCCCcHHHHHHHHHHHHccCCCCceeHHHHHHHHHhhccC-Ch------HH
Q psy8447 57 VTERYKGFSPFSFQG-LDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRG-TN------EE 128 (229)
Q Consensus 57 ~~~l~~~f~~~d~~~-i~~~ef~~~l~~~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~-~~------~~ 128 (229)
..++.+.|.....+. |++.+|...+..+.+..+.+.-++-+|+.+|.+++|.|+.+|+..++..+... .. .+
T Consensus 68 ~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~ 147 (187)
T KOG0034|consen 68 ADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLED 147 (187)
T ss_pred HHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHH
Confidence 456777788766666 99999999999998877777568899999999999999999999999998763 22 23
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHH
Q psy8447 129 LIKFTFLIYDLNNDGFITREEMFQLLRN 156 (229)
Q Consensus 129 ~~~~~F~~~D~~~~G~I~~~e~~~~l~~ 156 (229)
.+...|..+|.|++|.|+.+||++++..
T Consensus 148 i~d~t~~e~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 148 IVDKTFEEADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence 5678999999999999999999999864
No 26
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.08 E-value=8.3e-10 Score=74.00 Aligned_cols=72 Identities=21% Similarity=0.351 Sum_probs=55.0
Q ss_pred HHHHHHHHHhc-CCCCC-cccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcCh
Q psy8447 128 ELIKFTFLIYD-LNNDG-FITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEP 203 (229)
Q Consensus 128 ~~~~~~F~~~D-~~~~G-~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~~ 203 (229)
..+..+|..|| .|++| +|+..|++.++...+........++. .+..+++.+|.|+||.|+|+||..++...-
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~----~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPM----LVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHH----HHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 35678899999 78998 59999999999774322111121222 378899999999999999999999887553
No 27
>KOG2562|consensus
Probab=99.08 E-value=1.1e-09 Score=90.49 Aligned_cols=142 Identities=16% Similarity=0.216 Sum_probs=113.1
Q ss_pred CChhHHHHHHhccCccCCCC---CCHHHHHHHHhhhcCCCcHHHHHHHHHH----HHccCCCCceeHHHHHHHHHhhccC
Q psy8447 52 LPPSNVTERYKGFSPFSFQG---LDRVVFRELLHNTFDLVTEEILMERIFC----AFDRLCDGVIHLDEWVLGLSCFLRG 124 (229)
Q Consensus 52 l~~~~~~~l~~~f~~~d~~~---i~~~ef~~~l~~~~~~~~~~~~~~~lf~----~~d~~~~g~I~~~ef~~~~~~~~~~ 124 (229)
++.+....++..|...|.+. |+.+++...-.. .-...++.+||. .+-...+|.++|.+|+.++......
T Consensus 272 FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~----tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k 347 (493)
T KOG2562|consen 272 FSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDH----TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDK 347 (493)
T ss_pred eeHHHHHHHHHHHhhhccccccccCHHHHHHHhcc----chhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccC
Confidence 46667777777777777654 898888777554 233566888888 3334568999999999999999888
Q ss_pred ChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHH
Q psy8447 125 TNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 197 (229)
Q Consensus 125 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~ 197 (229)
....-++..|++.|.+++|.|+..|+.-+.+.....+......+-.+++.+.+++..+-+...|.|++.+|+.
T Consensus 348 ~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 348 DTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred CCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 8888999999999999999999999999988776544333333445778889999999888899999999998
No 28
>KOG4223|consensus
Probab=99.04 E-value=7.3e-10 Score=87.79 Aligned_cols=134 Identities=22% Similarity=0.284 Sum_probs=97.8
Q ss_pred hHHHHHHhccCccCCCC---CCHHHHHHHHhhhcCCCcHHHHHHHHHHHHccCCCCceeHHHHHHHHHhhccCC-----h
Q psy8447 55 SNVTERYKGFSPFSFQG---LDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGT-----N 126 (229)
Q Consensus 55 ~~~~~l~~~f~~~d~~~---i~~~ef~~~l~~~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~~-----~ 126 (229)
..+.+-.+.|...|.++ ++..+|..++..--......-+++.-+.-.|+|++|.|+++||+.-+..-.... .
T Consensus 160 km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv 239 (325)
T KOG4223|consen 160 KMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWV 239 (325)
T ss_pred HHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccc
Confidence 34555667787777654 999999999876432233344456667888999999999999998776654321 1
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHH
Q psy8447 127 EELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 197 (229)
Q Consensus 127 ~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~ 197 (229)
..+-.+++..+|+|++|+++.+|+..-+.. .. ....+..++.++-..|.|+||++|++|.+.
T Consensus 240 ~~Ere~F~~~~DknkDG~L~~dEl~~WI~P-------~~--~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 240 LTEREQFFEFRDKNKDGKLDGDELLDWILP-------SE--QDHAKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred cccHHHHHHHhhcCCCCccCHHHHhcccCC-------CC--ccHHHHHHHHHhhhhccCccccccHHHHhh
Confidence 224458899999999999999999854421 11 113344589999999999999999999765
No 29
>KOG4223|consensus
Probab=99.04 E-value=4.1e-09 Score=83.62 Aligned_cols=137 Identities=20% Similarity=0.238 Sum_probs=99.6
Q ss_pred HHHHHhccCccCCCC-CCHHHHHHHHhhhcCCCcHHHHHHHHHHHHccCCCCceeHHHHHHHHHhhc-------cC-ChH
Q psy8447 57 VTERYKGFSPFSFQG-LDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFL-------RG-TNE 127 (229)
Q Consensus 57 ~~~l~~~f~~~d~~~-i~~~ef~~~l~~~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~-------~~-~~~ 127 (229)
+..+....+ .+.++ |+..++...+..........+ +.+-|..+|.+.+|.|+|++++....... .. ...
T Consensus 79 l~~l~~~iD-~~~Dgfv~~~El~~wi~~s~k~~v~~~-~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~~ 156 (325)
T KOG4223|consen 79 LGKLVPKID-SDSDGFVTESELKAWIMQSQKKYVVEE-AARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEEDNE 156 (325)
T ss_pred HHHHHhhhc-CCCCCceeHHHHHHHHHHHHHHHHHHH-HHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchhcH
Confidence 334444444 22223 999999998887544333334 56678889999999999999999887531 11 111
Q ss_pred ------HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhc
Q psy8447 128 ------ELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTD 201 (229)
Q Consensus 128 ------~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~ 201 (229)
.+-+.-|+..|.|++|.+|.+||..++.. +..+.+..=++.+-+..+|+|+||.|+++||+.-|..
T Consensus 157 ~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHP--------Ee~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~ 228 (325)
T KOG4223|consen 157 EYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHP--------EEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYS 228 (325)
T ss_pred HHHHHHHHHHHHHhhcccCCCCcccHHHHHhccCh--------hhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhh
Confidence 23356799999999999999999998852 1245555557889999999999999999999997765
Q ss_pred Ch
Q psy8447 202 EP 203 (229)
Q Consensus 202 ~~ 203 (229)
++
T Consensus 229 ~~ 230 (325)
T KOG4223|consen 229 HE 230 (325)
T ss_pred cc
Confidence 54
No 30
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.02 E-value=8.7e-10 Score=72.94 Aligned_cols=71 Identities=24% Similarity=0.360 Sum_probs=53.9
Q ss_pred HHHHHHHHHhc-CCCCC-cccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcC
Q psy8447 128 ELIKFTFLIYD-LNNDG-FITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDE 202 (229)
Q Consensus 128 ~~~~~~F~~~D-~~~~G-~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~ 202 (229)
..++.+|+.|| .+++| +|+.+|++.+|+.-+........+++ .++.+++.+|.|++|.|+|++|..++...
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~----~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQE----VVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHH----HHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 35789999998 79999 59999999999971111111122222 37889999999999999999999987644
No 31
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.00 E-value=2.3e-09 Score=72.11 Aligned_cols=76 Identities=22% Similarity=0.426 Sum_probs=57.2
Q ss_pred HHHHHHHHHhcC-CC-CCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcChHH
Q psy8447 128 ELIKFTFLIYDL-NN-DGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLL 205 (229)
Q Consensus 128 ~~~~~~F~~~D~-~~-~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~~~~ 205 (229)
..+..+|..||. ++ +|+|+..|+..+++..++.......+++ .++.+++.+|.+++|.|+|++|+.++.....+
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~----ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~~ 83 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPM----AVDKIMKDLDQNRDGKVNFEEFVSLVAGLSIA 83 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHH----HHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 467899999997 87 6999999999999863221111121222 37889999999999999999999988765544
Q ss_pred HH
Q psy8447 206 LE 207 (229)
Q Consensus 206 ~~ 207 (229)
.+
T Consensus 84 ~~ 85 (94)
T cd05031 84 CE 85 (94)
T ss_pred HH
Confidence 43
No 32
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.99 E-value=4.2e-09 Score=70.54 Aligned_cols=75 Identities=19% Similarity=0.308 Sum_probs=57.7
Q ss_pred HHHHHHHHHhc-CCCCCc-ccHHHHHHHHHH-HhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcChH
Q psy8447 128 ELIKFTFLIYD-LNNDGF-ITREEMFQLLRN-SLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPL 204 (229)
Q Consensus 128 ~~~~~~F~~~D-~~~~G~-I~~~e~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~~~ 204 (229)
+.++.+|+.|| .+++|+ |+..|++.+++. ++..... ..+++ .++.+++.+|.+++|.|+|++|..++.....
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~-~~s~~----~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~ 83 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDA-QKDAD----AVDKIMKELDENGDGEVDFQEFVVLVAALTV 83 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccC-CCCHH----HHHHHHHHHCCCCCCcCcHHHHHHHHHHHHH
Confidence 56889999997 999995 999999999986 4322111 11222 3788999999999999999999998876554
Q ss_pred HHH
Q psy8447 205 LLE 207 (229)
Q Consensus 205 ~~~ 207 (229)
.-+
T Consensus 84 ~~~ 86 (92)
T cd05025 84 ACN 86 (92)
T ss_pred HHH
Confidence 433
No 33
>KOG4666|consensus
Probab=98.95 E-value=1.2e-09 Score=86.50 Aligned_cols=160 Identities=19% Similarity=0.182 Sum_probs=118.6
Q ss_pred CchhhhHhhcCCChhHHHHHHhccCcc---CCCC-CCHHHHHHHHhhhcCCCcHHHHHHHHHHHHccCCCCceeHHHHHH
Q psy8447 41 TSTPVVVQVSGLPPSNVTERYKGFSPF---SFQG-LDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVL 116 (229)
Q Consensus 41 ~~~~~~~~~~~l~~~~~~~l~~~f~~~---d~~~-i~~~ef~~~l~~~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~ 116 (229)
.++..+.+..+|+...+..-...+-.. .+++ |+-.+|...++ .+..+.++.+|..||.+++|.++|.|...
T Consensus 209 ~eF~~~~r~lkL~~~gl~k~ld~y~~var~~kg~~igi~efa~~l~-----vpvsd~l~~~f~LFde~~tg~~D~re~v~ 283 (412)
T KOG4666|consen 209 PEFVAKRRVLKLPLVGLIKKLDGYVYVAREAKGPDIGIVEFAVNLR-----VPVSDKLAPTFMLFDEGTTGNGDYRETVK 283 (412)
T ss_pred HHHHHHHhccCCChHHHHHHHhhHHHHHHhccCCCcceeEeeeeee-----cchhhhhhhhhheecCCCCCcccHHHHhh
Confidence 344556666777766555443333221 2222 66566654444 34445678999999999999999999999
Q ss_pred HHHhhccC-ChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHH
Q psy8447 117 GLSCFLRG-TNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDF 195 (229)
Q Consensus 117 ~~~~~~~~-~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef 195 (229)
.+..++.. .+...++.+|+.|+.+.||+++..++.-+++...+ ..... +--+|..++...+|+|++++|
T Consensus 284 ~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lg-v~~l~---------v~~lf~~i~q~d~~ki~~~~f 353 (412)
T KOG4666|consen 284 TLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLG-VEVLR---------VPVLFPSIEQKDDPKIYASNF 353 (412)
T ss_pred hheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcC-cceee---------ccccchhhhcccCcceeHHHH
Confidence 99999965 56778999999999999999999999988876543 11111 445788888888999999999
Q ss_pred HHHHhcChHHHHHhcccCCC
Q psy8447 196 QQSVTDEPLLLEAFGQCLPS 215 (229)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~ 215 (229)
.+++..+|++...+--++..
T Consensus 354 ~~fa~~~p~~a~~~~~yld~ 373 (412)
T KOG4666|consen 354 RKFAATEPNLALSELGYLDK 373 (412)
T ss_pred HHHHHhCchhhhhhhccccc
Confidence 99999999998776666643
No 34
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.94 E-value=4.1e-09 Score=73.13 Aligned_cols=61 Identities=21% Similarity=0.301 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHh
Q psy8447 127 EELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVT 200 (229)
Q Consensus 127 ~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~ 200 (229)
...+.++|..+|.|++|+|+.+|+..+. +. ..+..+..++..+|.|+||.||++||..++.
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~-----------~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR--LD-----------PNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH--cc-----------chHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 3678999999999999999999999875 11 1133478899999999999999999999984
No 35
>KOG0377|consensus
Probab=98.94 E-value=1.5e-08 Score=83.39 Aligned_cols=151 Identities=18% Similarity=0.178 Sum_probs=99.8
Q ss_pred hhhHhhcCCChhHHHHHHhccCccCCCCCCHHHHHHHHhhhcCCCcHHHHHHHHHHHHccCCCCceeHHHHHHHHHhhcc
Q psy8447 44 PVVVQVSGLPPSNVTERYKGFSPFSFQGLDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLR 123 (229)
Q Consensus 44 ~~~~~~~~l~~~~~~~l~~~f~~~d~~~i~~~ef~~~l~~~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~ 123 (229)
..+...+.-...++..-++.++..+.+.|+...-..++.......-+...+. =+....+.+|.+.|.+-+..+..-..
T Consensus 453 k~Lrerl~s~~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~--~kla~~s~d~~v~Y~~~~~~l~~e~~ 530 (631)
T KOG0377|consen 453 KELRERLRSHRSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLR--PKLANGSDDGKVEYKSTLDNLDTEVI 530 (631)
T ss_pred HHHHHHHHhhhhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhh--hhccCCCcCcceehHhHHHHhhhhhH
Confidence 3444444444455566666666666666888888877777644322222111 12334466788888877665544110
Q ss_pred --C----------ChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCccc
Q psy8447 124 --G----------TNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKIS 191 (229)
Q Consensus 124 --~----------~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is 191 (229)
. .....+..+|+.+|.|++|.|+.+||+.+++-++.+. +..++++. +.++.+.+|.|+||.|+
T Consensus 531 ~~ea~~slvetLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~-~~~i~~~~----i~~la~~mD~NkDG~ID 605 (631)
T KOG0377|consen 531 LEEAGSSLVETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHM-NGAISDDE----ILELARSMDLNKDGKID 605 (631)
T ss_pred HHHHHhHHHHHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhc-CCCcCHHH----HHHHHHhhccCCCCccc
Confidence 0 1224577899999999999999999999997665444 44555554 56678899999999999
Q ss_pred HHHHHHHHhc
Q psy8447 192 FQDFQQSVTD 201 (229)
Q Consensus 192 ~~ef~~~~~~ 201 (229)
++||+++++-
T Consensus 606 lNEfLeAFrl 615 (631)
T KOG0377|consen 606 LNEFLEAFRL 615 (631)
T ss_pred HHHHHHHHhh
Confidence 9999998763
No 36
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.92 E-value=8.5e-09 Score=68.32 Aligned_cols=71 Identities=18% Similarity=0.410 Sum_probs=54.9
Q ss_pred HHHHHHHHH-hcCCCCC-cccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcC
Q psy8447 128 ELIKFTFLI-YDLNNDG-FITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDE 202 (229)
Q Consensus 128 ~~~~~~F~~-~D~~~~G-~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~ 202 (229)
..+..+|+. +|.+|+| +|+.+||..++...+........++. .+..+++.+|.|+||.|+|+||..++...
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~----~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPG----VLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHH----HHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 356789999 6788876 99999999999876543222222222 37789999999999999999999988654
No 37
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.90 E-value=1.4e-08 Score=67.41 Aligned_cols=72 Identities=24% Similarity=0.413 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcC--CCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcCh
Q psy8447 128 ELIKFTFLIYDL--NNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEP 203 (229)
Q Consensus 128 ~~~~~~F~~~D~--~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~~ 203 (229)
+.++.+|..||. +++|+|+..|+..+++..++.......+. +.+..++..+|.+++|.|+|++|+.++...-
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~----~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDP----EAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCH----HHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 468889999999 89999999999999986332211111122 2378899999999999999999999887553
No 38
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.88 E-value=6.7e-09 Score=65.10 Aligned_cols=63 Identities=27% Similarity=0.377 Sum_probs=52.8
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcChH
Q psy8447 131 KFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPL 204 (229)
Q Consensus 131 ~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~~~ 204 (229)
+.+|..+|.+++|.|+.+|+..+++..+. +++ .++.++..+|.+++|.|+++||..++...+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~-------~~~----~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~ 64 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL-------PRS----VLAQIWDLADTDKDGKLDKEEFAIAMHLIAL 64 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC-------CHH----HHHHHHHHhcCCCCCcCCHHHHHHHHHHHHH
Confidence 56899999999999999999999987531 222 3778999999999999999999998876554
No 39
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.87 E-value=1.3e-08 Score=67.28 Aligned_cols=64 Identities=16% Similarity=0.116 Sum_probs=56.0
Q ss_pred HHHHHHHHcc-CCCCceeHHHHHHHHHh-hccCChH-HHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q psy8447 94 MERIFCAFDR-LCDGVIHLDEWVLGLSC-FLRGTNE-ELIKFTFLIYDLNNDGFITREEMFQLLRNS 157 (229)
Q Consensus 94 ~~~lf~~~d~-~~~g~I~~~ef~~~~~~-~~~~~~~-~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~ 157 (229)
+..+|+.||+ +++|.|+..||..++.. +....+. +.+..+++..|.|++|.|+++||..++..+
T Consensus 10 l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 10 LVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 5778999999 99999999999999998 5544455 789999999999999999999999988765
No 40
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.83 E-value=9.6e-09 Score=67.97 Aligned_cols=68 Identities=18% Similarity=0.320 Sum_probs=52.2
Q ss_pred HHHHHHHHhcC-CC-CCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcC
Q psy8447 129 LIKFTFLIYDL-NN-DGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDE 202 (229)
Q Consensus 129 ~~~~~F~~~D~-~~-~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~ 202 (229)
.+-.+|..||. +| +|+|+.+||+.++..... .....+++ .+..+++.+|.|++|.|+|+||..++...
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~--lg~k~t~~----ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKELT--IGSKLQDA----EIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHHh--cCCCCCHH----HHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 45689999998 67 899999999999974210 01222333 37779999999999999999999987653
No 41
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.81 E-value=6.5e-08 Score=63.98 Aligned_cols=64 Identities=14% Similarity=0.168 Sum_probs=57.0
Q ss_pred HHHHHHHHc-cCCCC-ceeHHHHHHHHHh-----hccCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q psy8447 94 MERIFCAFD-RLCDG-VIHLDEWVLGLSC-----FLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNS 157 (229)
Q Consensus 94 ~~~lf~~~d-~~~~g-~I~~~ef~~~~~~-----~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~ 157 (229)
+..+|+.|| ++++| .|+..|+..++.. +....+++.+..+++.+|.|++|.|+++||..++..+
T Consensus 10 l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 10 LIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 678999998 79999 6999999999998 5566677889999999999999999999999988765
No 42
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.78 E-value=2.7e-08 Score=67.15 Aligned_cols=66 Identities=23% Similarity=0.229 Sum_probs=54.9
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcChH
Q psy8447 128 ELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPL 204 (229)
Q Consensus 128 ~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~~~ 204 (229)
..++.+|..+|.+++|.|+.+|+..+++..+ .+++ .+..++..+|.+++|.|+++||+.++.....
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~-------~~~~----ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~ 75 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKSG-------LPQT----LLAKIWNLADIDNDGELDKDEFALAMHLIYR 75 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC-------CCHH----HHHHHHHHhcCCCCCCcCHHHHHHHHHHHHH
Confidence 5688999999999999999999999998742 1222 3778999999999999999999998775443
No 43
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.77 E-value=1.8e-08 Score=61.61 Aligned_cols=61 Identities=26% Similarity=0.503 Sum_probs=39.9
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHH
Q psy8447 130 IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSV 199 (229)
Q Consensus 130 ~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~ 199 (229)
+..+|..+|.+++|.|+..|+..+++.++... + .+.+..++..+|.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~-----~----~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGL-----S----EEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCC-----C----HHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 45667777777777777777777776654211 1 1135567777777777777777777654
No 44
>KOG4251|consensus
Probab=98.77 E-value=2.4e-08 Score=76.25 Aligned_cols=187 Identities=14% Similarity=0.087 Sum_probs=128.1
Q ss_pred CccccchhccCcCcHHHHHHHHHHHHHHhhcCCCCCCCCCCchhhhHhh----------------cCCCh---hHHHHHH
Q psy8447 1 MKRHLMFQLLPLSFRQEVETLCKIFKKLLNSSSNAGVPISTSTPVVVQV----------------SGLPP---SNVTERY 61 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~----------------~~l~~---~~~~~l~ 61 (229)
||||+|.++..|| ++..+.-+-.|+..+++++|..+....++.-++.. .+... .-++.+.
T Consensus 123 mqrwImektaEHf-qeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekevadairlneelkVDeEtqevlenlk 201 (362)
T KOG4251|consen 123 MQRWIMEKTAEHF-QEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVADAIRLNEELKVDEETQEVLENLK 201 (362)
T ss_pred HHHHHHHHHHHHH-HHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHHHHHhhccCcccccHHHHHHHHhhh
Confidence 6888888888888 55566667789999999988755544443322211 11111 1122334
Q ss_pred hccCccCCCC----CCHHHHHHHHhhhcCCCcHHHHHHHHHHHHccCCCCceeHHHHHHHHHhhccC---------ChHH
Q psy8447 62 KGFSPFSFQG----LDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRG---------TNEE 128 (229)
Q Consensus 62 ~~f~~~d~~~----i~~~ef~~~l~~~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~---------~~~~ 128 (229)
..+...|.-. ++..+|..++..-....-....+..|++.+|+|++..++-.+|+.+....... ...+
T Consensus 202 dRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkd 281 (362)
T KOG4251|consen 202 DRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKD 281 (362)
T ss_pred hhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHH
Confidence 4444444422 77788888877655555556668889999999999999999999876654332 2234
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHH
Q psy8447 129 LIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 197 (229)
Q Consensus 129 ~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~ 197 (229)
+.+.+=..+|.|++|.+|.+|+..++...... ..-+.+..++..-|.|++..++.++.+.
T Consensus 282 RkkEFeElIDsNhDGivTaeELe~y~dP~n~~---------~alne~~~~ma~~d~n~~~~Ls~eell~ 341 (362)
T KOG4251|consen 282 RKKEFEELIDSNHDGIVTAEELEDYVDPQNFR---------LALNEVNDIMALTDANNDEKLSLEELLE 341 (362)
T ss_pred HHHHHHHHhhcCCccceeHHHHHhhcCchhhh---------hhHHHHHHHHhhhccCCCcccCHHHHHH
Confidence 56667778999999999999999987543211 1122266678888899999999999876
No 45
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.76 E-value=5.2e-08 Score=59.47 Aligned_cols=61 Identities=33% Similarity=0.411 Sum_probs=55.6
Q ss_pred HHHHHHHHccCCCCceeHHHHHHHHHhhccCChHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q psy8447 94 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLL 154 (229)
Q Consensus 94 ~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l 154 (229)
+..+|..+|.+++|.|++.+|..++..+....+.+.+..+|..+|.+++|.|+.++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 4678999999999999999999999998888888899999999999999999999998765
No 46
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.76 E-value=4.4e-08 Score=58.67 Aligned_cols=51 Identities=27% Similarity=0.434 Sum_probs=40.2
Q ss_pred CCceeHHHHHHHHHhhccC-ChHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q psy8447 106 DGVIHLDEWVLGLSCFLRG-TNEELIKFTFLIYDLNNDGFITREEMFQLLRN 156 (229)
Q Consensus 106 ~g~I~~~ef~~~~~~~~~~-~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~ 156 (229)
+|.|+.++|..++..+... .+.+.+..+|..+|.+++|+|+++||..++..
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred cCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 6788888888888666555 67777888888888888888888888887753
No 47
>KOG0751|consensus
Probab=98.76 E-value=1.5e-07 Score=78.61 Aligned_cols=148 Identities=19% Similarity=0.267 Sum_probs=109.2
Q ss_pred ChhHHHHHHhccCccCCCC---CCHHHHHHHHhhhcCCCcH-HHHHHHHHHHHccCCCCceeHHHHHHHHHhhccCChHH
Q psy8447 53 PPSNVTERYKGFSPFSFQG---LDRVVFRELLHNTFDLVTE-EILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEE 128 (229)
Q Consensus 53 ~~~~~~~l~~~f~~~d~~~---i~~~ef~~~l~~~~~~~~~-~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~ 128 (229)
.+.++..++-.|...+.++ +++++|...+..+...... ++..+.+-...|..+||.|+|+||+.+-..+|. ++.
T Consensus 31 ~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~--pDa 108 (694)
T KOG0751|consen 31 DPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCA--PDA 108 (694)
T ss_pred ChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccC--chH
Confidence 4566777777777766654 9999998888777654433 333344445567889999999999999888874 466
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHh--hcCCCCCCCh------------------------HHHHHHHHHHHHHc
Q psy8447 129 LIKFTFLIYDLNNDGFITREEMFQLLRNSL--ISHPQDEDPD------------------------EGVRDLVELALRKM 182 (229)
Q Consensus 129 ~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~--~~~~~~~~~~------------------------~~~~~~~~~~~~~~ 182 (229)
....+|+.||..++|.++.+++..++.+.- ++.+....++ +-..++..+.|+..
T Consensus 109 l~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qafr~~ 188 (694)
T KOG0751|consen 109 LFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQLEHAEQAFREK 188 (694)
T ss_pred HHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 778899999999999999999999998642 2333333222 33444577889999
Q ss_pred CCCCCCcccHHHHHHHHhcC
Q psy8447 183 DYDKDGKISFQDFQQSVTDE 202 (229)
Q Consensus 183 d~~~dg~Is~~ef~~~~~~~ 202 (229)
|..+.|.||--+|...|...
T Consensus 189 d~~~ng~is~Ldfq~imvt~ 208 (694)
T KOG0751|consen 189 DKAKNGFISVLDFQDIMVTI 208 (694)
T ss_pred cccCCCeeeeechHhhhhhh
Confidence 99999999999998877643
No 48
>KOG0036|consensus
Probab=98.74 E-value=1.5e-07 Score=77.01 Aligned_cols=96 Identities=26% Similarity=0.347 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHccCCCCceeHHHHHHHHHhhccC-ChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChH
Q psy8447 91 EILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRG-TNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDE 169 (229)
Q Consensus 91 ~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~-~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~ 169 (229)
+..++.+|+.+|.+++|.|+..+....+..+..+ ...+.++.+|...|.|.+|.+++.||++++..-
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~------------ 80 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK------------ 80 (463)
T ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHh------------
Confidence 4447889999999999999999999999998876 566788899999999999999999999999742
Q ss_pred HHHHHHHHHHHHcCCCCCCcccHHHHHHHHh
Q psy8447 170 GVRDLVELALRKMDYDKDGKISFQDFQQSVT 200 (229)
Q Consensus 170 ~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~ 200 (229)
+..+..+|..+|.+.||.|..+|..+.+.
T Consensus 81 --E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~ 109 (463)
T KOG0036|consen 81 --ELELYRIFQSIDLEHDGKIDPNEIWRYLK 109 (463)
T ss_pred --HHHHHHHHhhhccccCCccCHHHHHHHHH
Confidence 22367799999999999999999888776
No 49
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.73 E-value=1.3e-07 Score=63.30 Aligned_cols=65 Identities=18% Similarity=0.114 Sum_probs=54.1
Q ss_pred HHHHHHHHc-cCCCC-ceeHHHHHHHHHhh-----ccCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh
Q psy8447 94 MERIFCAFD-RLCDG-VIHLDEWVLGLSCF-----LRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSL 158 (229)
Q Consensus 94 ~~~lf~~~d-~~~~g-~I~~~ef~~~~~~~-----~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~ 158 (229)
+..+|..|| .|++| +|+..|+..++... ........+..+++.+|.|++|.|+++||..++..+.
T Consensus 12 ~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 12 LIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 567799998 78998 59999999999763 2233567899999999999999999999999998763
No 50
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.72 E-value=1.4e-07 Score=63.59 Aligned_cols=63 Identities=22% Similarity=0.275 Sum_probs=56.8
Q ss_pred HHHHHHHHccCCCCceeHHHHHHHHHhhccCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh
Q psy8447 94 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSL 158 (229)
Q Consensus 94 ~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~ 158 (229)
+..+|..+|.+++|.|++.++..++... +.+.+.+..+|..+|.+++|.|+++||..++..+.
T Consensus 12 l~~~F~~~D~d~~G~Is~~el~~~l~~~--~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~ 74 (96)
T smart00027 12 YEQIFRSLDKNQDGTVTGAQAKPILLKS--GLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIY 74 (96)
T ss_pred HHHHHHHhCCCCCCeEeHHHHHHHHHHc--CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHH
Confidence 6788999999999999999999999874 46778899999999999999999999999987653
No 51
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.69 E-value=1.8e-08 Score=60.43 Aligned_cols=53 Identities=38% Similarity=0.505 Sum_probs=42.8
Q ss_pred CCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhc
Q psy8447 141 NDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTD 201 (229)
Q Consensus 141 ~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~ 201 (229)
.+|.|+.++|..++..++... .+++. +..+|..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~----~s~~e----~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKD----LSEEE----VDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSS----SCHHH----HHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCC----CCHHH----HHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 479999999999996654331 23332 888999999999999999999998763
No 52
>KOG0030|consensus
Probab=98.69 E-value=3.1e-07 Score=64.25 Aligned_cols=104 Identities=19% Similarity=0.175 Sum_probs=88.4
Q ss_pred HHHHHHHHHHccCCCCceeHHHHHHHHHhhccCChHHHHHHHHHHhcCC--CCCcccHHHHHHHHHHHhhcCCCCCCChH
Q psy8447 92 ILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLN--NDGFITREEMFQLLRNSLISHPQDEDPDE 169 (229)
Q Consensus 92 ~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~~--~~G~I~~~e~~~~l~~~~~~~~~~~~~~~ 169 (229)
+..+.+|..||..++|.|++.+.-..++.+....++..+.+....++.+ +--+|++++|.-++.++..+- .+.
T Consensus 11 ~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk-----~q~ 85 (152)
T KOG0030|consen 11 EEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNK-----DQG 85 (152)
T ss_pred HHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhcc-----ccC
Confidence 3478999999999999999999999999999999999999999999888 567999999999998876432 222
Q ss_pred HHHHHHHHHHHHcCCCCCCcccHHHHHHHHhc
Q psy8447 170 GVRDLVELALRKMDYDKDGKISFQDFQQSVTD 201 (229)
Q Consensus 170 ~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~ 201 (229)
.+++.++ -++.+|+.+.|.|...|++.++..
T Consensus 86 t~edfve-gLrvFDkeg~G~i~~aeLRhvLtt 116 (152)
T KOG0030|consen 86 TYEDFVE-GLRVFDKEGNGTIMGAELRHVLTT 116 (152)
T ss_pred cHHHHHH-HHHhhcccCCcceeHHHHHHHHHH
Confidence 4555444 889999999999999999998764
No 53
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.68 E-value=1.4e-07 Score=63.31 Aligned_cols=65 Identities=14% Similarity=0.085 Sum_probs=55.7
Q ss_pred HHHHHHHHcc-CC-CCceeHHHHHHHHHh-----hccCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh
Q psy8447 94 MERIFCAFDR-LC-DGVIHLDEWVLGLSC-----FLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSL 158 (229)
Q Consensus 94 ~~~lf~~~d~-~~-~g~I~~~ef~~~~~~-----~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~ 158 (229)
+..+|..||. ++ +|.|+..|+..++.. +....+++.+..+++.+|.+++|.|+++||..++....
T Consensus 10 l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 10 LILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 6779999997 87 699999999999875 23345678899999999999999999999999987653
No 54
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.68 E-value=1.4e-07 Score=58.96 Aligned_cols=61 Identities=25% Similarity=0.267 Sum_probs=53.9
Q ss_pred HHHHHHHccCCCCceeHHHHHHHHHhhccCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q psy8447 95 ERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNS 157 (229)
Q Consensus 95 ~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~ 157 (229)
+.+|..+|.+++|.|+.+|+..++... +.+.+.++.+|..+|.+++|.|+.+||..++..+
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~--g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS--GLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc--CCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 467999999999999999999999876 3477789999999999999999999999988654
No 55
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.66 E-value=2.3e-07 Score=62.08 Aligned_cols=65 Identities=17% Similarity=0.147 Sum_probs=55.5
Q ss_pred HHHHHHHHc-cCCCC-ceeHHHHHHHHHh-hc----cCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh
Q psy8447 94 MERIFCAFD-RLCDG-VIHLDEWVLGLSC-FL----RGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSL 158 (229)
Q Consensus 94 ~~~lf~~~d-~~~~g-~I~~~ef~~~~~~-~~----~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~ 158 (229)
+..+|..|| .+++| .|+..|+..++.. +. ...+.+.++.+|+.+|.+++|.|+++||..++..+.
T Consensus 11 l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 11 LINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 678999997 99999 5999999999975 32 134667899999999999999999999999987653
No 56
>KOG0031|consensus
Probab=98.65 E-value=9.5e-07 Score=62.89 Aligned_cols=114 Identities=15% Similarity=0.175 Sum_probs=92.6
Q ss_pred HHHHHHHHccCCCCceeHHHHHHHHHhhccCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHH
Q psy8447 94 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRD 173 (229)
Q Consensus 94 ~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 173 (229)
...+|..+|.|++|.|+.+++...+..+.+..+++.+..+++. ..|.|++.-|..++-..+... ..++
T Consensus 34 fKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~E----a~gPINft~FLTmfGekL~gt--------dpe~ 101 (171)
T KOG0031|consen 34 FKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKE----APGPINFTVFLTMFGEKLNGT--------DPEE 101 (171)
T ss_pred HHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh----CCCCeeHHHHHHHHHHHhcCC--------CHHH
Confidence 4778999999999999999999999999999999999999865 479999998887776544322 2345
Q ss_pred HHHHHHHHcCCCCCCcccHHHHHHHHhcC------hHHHHHhcccCCChHHH
Q psy8447 174 LVELALRKMDYDKDGKISFQDFQQSVTDE------PLLLEAFGQCLPSDAAR 219 (229)
Q Consensus 174 ~~~~~~~~~d~~~dg~Is~~ef~~~~~~~------~~~~~~~~~~~~~~~~~ 219 (229)
.+..+|+.+|.++.|.|.-+.++++++.. +.+-+++....+...|+
T Consensus 102 ~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~ 153 (171)
T KOG0031|consen 102 VILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGN 153 (171)
T ss_pred HHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCc
Confidence 68889999999999999999999999754 34666777776654444
No 57
>KOG2643|consensus
Probab=98.63 E-value=3.1e-07 Score=75.78 Aligned_cols=147 Identities=16% Similarity=0.230 Sum_probs=81.1
Q ss_pred cCccCCCCCCHHHHHHHHhhhcCCC--cHHHHHHHHHHHHccCCCCceeHHHHHHHHHhhccCChHHHHHHHHHHhcCCC
Q psy8447 64 FSPFSFQGLDRVVFRELLHNTFDLV--TEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNN 141 (229)
Q Consensus 64 f~~~d~~~i~~~ef~~~l~~~~~~~--~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~~~ 141 (229)
|+..+.+.|+..+|..++-...... .....+.++-+.++.++. -|++.||+.++..+..-. .+..|...| ...
T Consensus 327 ~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~~~-gISl~Ef~~Ff~Fl~~l~---dfd~Al~fy-~~A 401 (489)
T KOG2643|consen 327 FDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDDGK-GISLQEFKAFFRFLNNLN---DFDIALRFY-HMA 401 (489)
T ss_pred hCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCCCC-CcCHHHHHHHHHHHhhhh---HHHHHHHHH-HHc
Confidence 3333333366666666655543221 222234444455544432 366666666665543211 222222222 122
Q ss_pred CCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcChHHHHHhcc--cCCChHHH
Q psy8447 142 DGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAFGQ--CLPSDAAR 219 (229)
Q Consensus 142 ~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~~~~~~~~~~--~~~~~~~~ 219 (229)
.+.|+..+|.++...+-+... ++. +++-+|.-+|.|+||.+|.+||+.+|.+. +.+ .+|.+.|.
T Consensus 402 g~~i~~~~f~raa~~vtGveL----Sdh----VvdvvF~IFD~N~Dg~LS~~EFl~Vmk~R------mhrgl~~p~~~gl 467 (489)
T KOG2643|consen 402 GASIDEKTFQRAAKVVTGVEL----SDH----VVDVVFTIFDENNDGTLSHKEFLAVMKRR------MHRGLELPKDTGL 467 (489)
T ss_pred CCCCCHHHHHHHHHHhcCccc----ccc----eeeeEEEEEccCCCCcccHHHHHHHHHHH------hhccccCCcccch
Confidence 466777777776665432211 211 36678888999999999999999988743 233 44666666
Q ss_pred HHHHhhhhcC
Q psy8447 220 QSFLSTLQAC 229 (229)
Q Consensus 220 ~~~~~~~~~~ 229 (229)
+..-+..|.|
T Consensus 468 ~~~~~~v~kc 477 (489)
T KOG2643|consen 468 LRYMKAVKKC 477 (489)
T ss_pred HHHHHHHHHH
Confidence 6666666655
No 58
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.60 E-value=2.9e-07 Score=63.88 Aligned_cols=57 Identities=28% Similarity=0.281 Sum_probs=51.0
Q ss_pred HHHHHHHHccCCCCceeHHHHHHHHHhhccCChHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q psy8447 94 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLL 154 (229)
Q Consensus 94 ~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l 154 (229)
+..+|..+|.|++|.|+..|+..+. ....+..+..+|..+|.|++|.||.+||+..+
T Consensus 50 l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 50 VGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 6889999999999999999999876 23456778899999999999999999999988
No 59
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.59 E-value=7.1e-08 Score=49.65 Aligned_cols=27 Identities=30% Similarity=0.497 Sum_probs=18.7
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHH
Q psy8447 130 IKFTFLIYDLNNDGFITREEMFQLLRN 156 (229)
Q Consensus 130 ~~~~F~~~D~~~~G~I~~~e~~~~l~~ 156 (229)
++.+|+.||+|++|+|+.+||..+++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 566777777777777777777776654
No 60
>PF14658 EF-hand_9: EF-hand domain
Probab=98.58 E-value=1.7e-07 Score=57.48 Aligned_cols=62 Identities=18% Similarity=0.372 Sum_probs=53.4
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCC-CcccHHHHHHHHhc
Q psy8447 132 FTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKD-GKISFQDFQQSVTD 201 (229)
Q Consensus 132 ~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d-g~Is~~ef~~~~~~ 201 (229)
.+|..||+++.|.|...++..+|++++...+.+. -++.+...+|+++. |.|+++.|..+|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~--------~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEES--------ELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHH--------HHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 4799999999999999999999999977544332 37889999999998 99999999998864
No 61
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.57 E-value=4.8e-07 Score=59.91 Aligned_cols=70 Identities=21% Similarity=0.380 Sum_probs=52.8
Q ss_pred HHHHHHHHhcCC--CCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcC
Q psy8447 129 LIKFTFLIYDLN--NDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDE 202 (229)
Q Consensus 129 ~~~~~F~~~D~~--~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~ 202 (229)
.+...|..|+.. ++|.|+.+||..++...+......... ++.++.+++.+|.+++|.|+|++|..++...
T Consensus 9 ~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~----~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 9 TIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKN----QKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCC----HHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 456789999877 489999999999997543322211111 2347889999999999999999999988743
No 62
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.56 E-value=5.6e-07 Score=59.50 Aligned_cols=64 Identities=14% Similarity=0.050 Sum_probs=52.0
Q ss_pred HHHHHHHHcc-CC-CCceeHHHHHHHHHh---hccCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q psy8447 94 MERIFCAFDR-LC-DGVIHLDEWVLGLSC---FLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNS 157 (229)
Q Consensus 94 ~~~lf~~~d~-~~-~g~I~~~ef~~~~~~---~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~ 157 (229)
+-.+|..||. ++ +|.|+..||..++.. +....+.+.+..+++.+|.|++|.|+++||..++..+
T Consensus 12 ~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 12 LVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 4567888886 66 789999999999963 3455677889999999999999999999998888765
No 63
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.55 E-value=5.3e-07 Score=59.76 Aligned_cols=64 Identities=16% Similarity=0.147 Sum_probs=54.4
Q ss_pred HHHHHHHHcc--CCCCceeHHHHHHHHHhh-cc----CChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q psy8447 94 MERIFCAFDR--LCDGVIHLDEWVLGLSCF-LR----GTNEELIKFTFLIYDLNNDGFITREEMFQLLRNS 157 (229)
Q Consensus 94 ~~~lf~~~d~--~~~g~I~~~ef~~~~~~~-~~----~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~ 157 (229)
+..+|..+|+ +++|.|+..+|..++... .. ......+..++..+|.+++|.|++++|..++...
T Consensus 10 l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 10 IIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 6778999999 899999999999998752 22 1246789999999999999999999999988765
No 64
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.50 E-value=1.1e-06 Score=58.26 Aligned_cols=64 Identities=17% Similarity=0.235 Sum_probs=50.6
Q ss_pred HHHHHHH-HccCCCC-ceeHHHHHHHHHhhc-----cCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q psy8447 94 MERIFCA-FDRLCDG-VIHLDEWVLGLSCFL-----RGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNS 157 (229)
Q Consensus 94 ~~~lf~~-~d~~~~g-~I~~~ef~~~~~~~~-----~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~ 157 (229)
+..+|.. +|.+++| .|+..||..++.... .......+..+++.+|.|++|.|+++||..++..+
T Consensus 11 l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 11 LIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 5667777 6677765 899999999888763 23445678889999999999999999998888765
No 65
>KOG0038|consensus
Probab=98.41 E-value=1.8e-06 Score=60.89 Aligned_cols=99 Identities=17% Similarity=0.169 Sum_probs=80.8
Q ss_pred HHHHhccCccCCCCCCHHHHHHHHhhhcCCCcHHHHHHHHHHHHccCCCCceeHHHHHHHHHhhccC-ChHH----HHHH
Q psy8447 58 TERYKGFSPFSFQGLDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRG-TNEE----LIKF 132 (229)
Q Consensus 58 ~~l~~~f~~~d~~~i~~~ef~~~l~~~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~-~~~~----~~~~ 132 (229)
+++-++|.....+.+++.+|..++.-+.-..+.+--+..+|+.+|-|+++.|.-+++...+..+.++ ...+ ...+
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ek 153 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEK 153 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 4566788888888899999999999876545555556778999999999999999999999998764 3333 3467
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHH
Q psy8447 133 TFLIYDLNNDGFITREEMFQLLRN 156 (229)
Q Consensus 133 ~F~~~D~~~~G~I~~~e~~~~l~~ 156 (229)
+.+..|.||+|+|+..||.+++..
T Consensus 154 vieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 154 VIEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred HHHHhcCCCCCcccHHHHHHHHHh
Confidence 788899999999999999998753
No 66
>KOG4251|consensus
Probab=98.35 E-value=1.9e-06 Score=66.03 Aligned_cols=142 Identities=16% Similarity=0.147 Sum_probs=94.1
Q ss_pred HHHHhccCccCCC---CCCHHHHHHHHhhhcCC---CcHHHHHHHHHHHHccCCCCceeHHHHHHHHHhhcc--------
Q psy8447 58 TERYKGFSPFSFQ---GLDRVVFRELLHNTFDL---VTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLR-------- 123 (229)
Q Consensus 58 ~~l~~~f~~~d~~---~i~~~ef~~~l~~~~~~---~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~-------- 123 (229)
+.+...|.+.|.+ .|+..++++.+...... ...++ .+.-|+..|+|++|.|+|+||..-+.....
T Consensus 101 rklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeamee-SkthFraVDpdgDGhvsWdEykvkFlaskghsekevad 179 (362)
T KOG4251|consen 101 RKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEE-SKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVAD 179 (362)
T ss_pred HHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhh-hhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHHHH
Confidence 3445555555543 49999998887763211 11111 345688899999999999999887665111
Q ss_pred ----------------------------------------------------CChHHHHHHHHHHhcCCCCCcccHHHHH
Q psy8447 124 ----------------------------------------------------GTNEELIKFTFLIYDLNNDGFITREEMF 151 (229)
Q Consensus 124 ----------------------------------------------------~~~~~~~~~~F~~~D~~~~G~I~~~e~~ 151 (229)
+....-++.+...+|.||+-.++..||.
T Consensus 180 airlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFi 259 (362)
T KOG4251|consen 180 AIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFI 259 (362)
T ss_pred HhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhh
Confidence 0011234556777888888888888887
Q ss_pred HHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHh
Q psy8447 152 QLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVT 200 (229)
Q Consensus 152 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~ 200 (229)
...-......-.+.+.+.-+++..+++=..+|.|.||.++++|+..++-
T Consensus 260 slpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~d 308 (362)
T KOG4251|consen 260 SLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVD 308 (362)
T ss_pred cCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcC
Confidence 6543322233334445555666778888889999999999999988753
No 67
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.34 E-value=4.3e-06 Score=55.04 Aligned_cols=70 Identities=17% Similarity=0.409 Sum_probs=52.7
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcCh
Q psy8447 129 LIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEP 203 (229)
Q Consensus 129 ~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~~ 203 (229)
.+...|..|. .+.|.+++.||..++..=+.........+. .++.+++..|.|+||.|+|.||..++....
T Consensus 9 ~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~----~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 9 KMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPM----AVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHH----HHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 3567899997 446799999999999764433222222333 478899999999999999999999876543
No 68
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.33 E-value=1.1e-06 Score=45.24 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=24.9
Q ss_pred HHHHHHHHccCCCCceeHHHHHHHHHh
Q psy8447 94 MERIFCAFDRLCDGVIHLDEWVLGLSC 120 (229)
Q Consensus 94 ~~~lf~~~d~~~~g~I~~~ef~~~~~~ 120 (229)
++.+|+.+|+|++|.|+++||+.++..
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 578999999999999999999998864
No 69
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.31 E-value=9.3e-07 Score=46.38 Aligned_cols=27 Identities=37% Similarity=0.678 Sum_probs=22.5
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHH
Q psy8447 129 LIKFTFLIYDLNNDGFITREEMFQLLR 155 (229)
Q Consensus 129 ~~~~~F~~~D~~~~G~I~~~e~~~~l~ 155 (229)
+++.+|+.||.|++|+|+.+||..+++
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 467889999999999999999998887
No 70
>PF14658 EF-hand_9: EF-hand domain
Probab=98.28 E-value=5.1e-06 Score=51.01 Aligned_cols=62 Identities=16% Similarity=0.228 Sum_probs=54.1
Q ss_pred HHHHHHccCCCCceeHHHHHHHHHhhcc-CChHHHHHHHHHHhcCCCC-CcccHHHHHHHHHHH
Q psy8447 96 RIFCAFDRLCDGVIHLDEWVLGLSCFLR-GTNEELIKFTFLIYDLNND-GFITREEMFQLLRNS 157 (229)
Q Consensus 96 ~lf~~~d~~~~g~I~~~ef~~~~~~~~~-~~~~~~~~~~F~~~D~~~~-G~I~~~e~~~~l~~~ 157 (229)
.+|..||.++.|.|.-.+++.++..... ...+.+++.+.+.+|+++. |.|+.++|..+|+..
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHHh
Confidence 3688899999999999999999999887 6777899999999999988 999999999988753
No 71
>KOG0041|consensus
Probab=98.26 E-value=3.4e-06 Score=62.73 Aligned_cols=65 Identities=25% Similarity=0.375 Sum_probs=49.2
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhc
Q psy8447 128 ELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTD 201 (229)
Q Consensus 128 ~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~ 201 (229)
..+..+|+.||.+.||+|+..|+..+|.+++.- +..+ -++.+++..|-|.||+|||-||.-++..
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgap-------QTHL--~lK~mikeVded~dgklSfreflLIfrk 163 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLGAP-------QTHL--GLKNMIKEVDEDFDGKLSFREFLLIFRK 163 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHhCCc-------hhhH--HHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 456678888999999999999998888887531 1111 2677888888888999999888876653
No 72
>KOG2643|consensus
Probab=98.24 E-value=6.3e-06 Score=68.24 Aligned_cols=120 Identities=18% Similarity=0.231 Sum_probs=75.6
Q ss_pred cCCCC-CCHHHHHHHHhhhcCCCcHHHHHHHHHHHHccCCCCceeHHHHHHHHHhhccCC---------------hHHHH
Q psy8447 67 FSFQG-LDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGT---------------NEELI 130 (229)
Q Consensus 67 ~d~~~-i~~~ef~~~l~~~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~~---------------~~~~~ 130 (229)
.+..+ |+..+..-++.-+. .+... .+.+|+.||.|+||.|+.+||.........+. ..-.+
T Consensus 210 lg~~GLIsfSdYiFLlTlLS--~p~~~-F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~ 286 (489)
T KOG2643|consen 210 LGESGLISFSDYIFLLTLLS--IPERN-FRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEV 286 (489)
T ss_pred cCCCCeeeHHHHHHHHHHHc--cCccc-ceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhh
Confidence 34434 77777666666543 22222 46678888888888888888887775533210 00011
Q ss_pred H--HHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcC
Q psy8447 131 K--FTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDE 202 (229)
Q Consensus 131 ~--~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~ 202 (229)
. ..-..|-.+++|.++.++|.++++.+ .+++++.-|..+|+...|.|+-.+|..++...
T Consensus 287 nsaL~~yFFG~rg~~kLs~deF~~F~e~L-------------q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~ 347 (489)
T KOG2643|consen 287 NSALLTYFFGKRGNGKLSIDEFLKFQENL-------------QEEILELEFERFDKGDSGAISEVDFAELLLAY 347 (489)
T ss_pred hhhHHHHhhccCCCccccHHHHHHHHHHH-------------HHHHHHHHHHHhCcccccccCHHHHHHHHHHH
Confidence 1 12234577788888888888888765 23345666777777777888888888877643
No 73
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.17 E-value=1.2e-05 Score=53.27 Aligned_cols=64 Identities=17% Similarity=0.144 Sum_probs=44.8
Q ss_pred HHHHHHHHccC--CCCceeHHHHHHHHHhh-ccCCh----HHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q psy8447 94 MERIFCAFDRL--CDGVIHLDEWVLGLSCF-LRGTN----EELIKFTFLIYDLNNDGFITREEMFQLLRNS 157 (229)
Q Consensus 94 ~~~lf~~~d~~--~~g~I~~~ef~~~~~~~-~~~~~----~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~ 157 (229)
+-.+|..++.. .+|.|+..||..++... ....+ ++.+..+|..+|.+++|.|+++||..++..+
T Consensus 10 ~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 10 IINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 34566666644 46788888888888632 22232 6778888888888888888888888877654
No 74
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.16 E-value=1.1e-05 Score=67.74 Aligned_cols=57 Identities=35% Similarity=0.388 Sum_probs=49.2
Q ss_pred CcHHHHHHHHHHHHccCCCCceeHHHHHHHHHhhccCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q psy8447 88 VTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNS 157 (229)
Q Consensus 88 ~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~ 157 (229)
......+..+|+.+|.+++|.|+.+||.. +..+|..+|.|++|.|+++||...+...
T Consensus 330 ~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 330 EAFTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred ChhhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 34455578899999999999999999952 4678999999999999999999998764
No 75
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.15 E-value=1.1e-05 Score=53.03 Aligned_cols=64 Identities=16% Similarity=0.289 Sum_probs=44.5
Q ss_pred HHHHhccCccCCC--CCCHHHHHHHHhhhcC----CCcHHHHHHHHHHHHccCCCCceeHHHHHHHHHhh
Q psy8447 58 TERYKGFSPFSFQ--GLDRVVFRELLHNTFD----LVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCF 121 (229)
Q Consensus 58 ~~l~~~f~~~d~~--~i~~~ef~~~l~~~~~----~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~ 121 (229)
..+...|..+..+ .++..+|+.++..-.+ .......+..+|+..|.|+||.|+|.||+.++..+
T Consensus 8 ~~lI~~FhkYaG~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 8 EKMMLTFHKFAGEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 3344444444322 3888888888876533 22345557889999999999999999999888776
No 76
>KOG0377|consensus
Probab=98.12 E-value=1.3e-05 Score=66.42 Aligned_cols=63 Identities=29% Similarity=0.323 Sum_probs=55.7
Q ss_pred HHHHHHHHccCCCCceeHHHHHHHHHhhccC----ChHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q psy8447 94 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRG----TNEELIKFTFLIYDLNNDGFITREEMFQLLRN 156 (229)
Q Consensus 94 ~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~----~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~ 156 (229)
++.+|+..|.|++|.|+.+||..+|..+... ..++.+-.+=+..|-|+||.|+..||.++++-
T Consensus 549 LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 549 LETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred HHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 6789999999999999999999999987653 45677788889999999999999999998864
No 77
>KOG4065|consensus
Probab=98.11 E-value=1.4e-05 Score=54.07 Aligned_cols=67 Identities=19% Similarity=0.438 Sum_probs=55.4
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHHhh-----cCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHH
Q psy8447 132 FTFLIYDLNNDGFITREEMFQLLRNSLI-----SHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQS 198 (229)
Q Consensus 132 ~~F~~~D~~~~G~I~~~e~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~ 198 (229)
-.|++.|.|++|.|+.-|+..++..... +.+..-.++...+.++..+++.-|.|+||.|+|-||...
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 5789999999999999999999887642 223344466778889999999999999999999999864
No 78
>KOG0041|consensus
Probab=98.11 E-value=3.7e-05 Score=57.32 Aligned_cols=102 Identities=12% Similarity=0.193 Sum_probs=72.1
Q ss_pred CCChhHHHHHHhccCccCCCC---CCHHHHHHHHhhhcCCCcHHHHHHHHHHHHccCCCCceeHHHHHHHHHhhccCC--
Q psy8447 51 GLPPSNVTERYKGFSPFSFQG---LDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGT-- 125 (229)
Q Consensus 51 ~l~~~~~~~l~~~f~~~d~~~---i~~~ef~~~l~~~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~~-- 125 (229)
.++..+++.....|..+|.+. |+..+++.++..++..-+.-- +..++...|.|.+|+|+|.+|+-++.....+-
T Consensus 92 eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~-lK~mikeVded~dgklSfreflLIfrkaaagEL~ 170 (244)
T KOG0041|consen 92 EFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLG-LKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQ 170 (244)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHH-HHHHHHHhhcccccchhHHHHHHHHHHHhccccc
Confidence 455666666666666665542 999999999999876444444 68899999999999999999999888765432
Q ss_pred hHHHHHHHHHH--hcCCCCCcccHHHHHHH
Q psy8447 126 NEELIKFTFLI--YDLNNDGFITREEMFQL 153 (229)
Q Consensus 126 ~~~~~~~~F~~--~D~~~~G~I~~~e~~~~ 153 (229)
.+..+..+=+. .|...-|......|-.+
T Consensus 171 ~ds~~~~LAr~~eVDVskeGV~GAknFFeA 200 (244)
T KOG0041|consen 171 EDSGLLRLARLSEVDVSKEGVSGAKNFFEA 200 (244)
T ss_pred cchHHHHHHHhcccchhhhhhhhHHHHHHH
Confidence 12333334334 67777777777766554
No 79
>KOG4347|consensus
Probab=98.07 E-value=9e-06 Score=70.39 Aligned_cols=141 Identities=23% Similarity=0.274 Sum_probs=102.4
Q ss_pred hhccCcCcHHHHHHHHHHHHHHhhcCC-CCCCCCCCchhhhHhhcCCChhHHHHHHhccCccC-----------CCC---
Q psy8447 7 FQLLPLSFRQEVETLCKIFKKLLNSSS-NAGVPISTSTPVVVQVSGLPPSNVTERYKGFSPFS-----------FQG--- 71 (229)
Q Consensus 7 ~~~~~~~~~~~i~~l~~~f~~l~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~f~~~d-----------~~~--- 71 (229)
|+....+|.+.|+.++..++...-..- .. -+...++.+.+...++..++..++..|.... ++-
T Consensus 454 y~kFg~it~e~ie~~R~K~r~~v~q~le~~--~krt~lrs~~~~~~lt~~dL~~lYd~f~~e~~~~~~~~~~~~p~~~~~ 531 (671)
T KOG4347|consen 454 YEKFGDITDELIEHLRKKHRLGVLQSLEDF--TKRTILRSVVQTTSLTNTDLENLYDLFKEEHLTNSIGLGRSDPDFEAF 531 (671)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHhhcccCccCHHHHHHHHHHHHHHHhccCcccCCCCCCchHH
Confidence 344456777777777666654442111 00 1122344555566677777777777765321 110
Q ss_pred ---CCHHHHHHHHhhhcCCCcHHHHHHHHHHHHccCCCCceeHHHHHHHHHhhccCChHHHHHHHHHHhcCCCCCcccHH
Q psy8447 72 ---LDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITRE 148 (229)
Q Consensus 72 ---i~~~ef~~~l~~~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~ 148 (229)
|+...|..++..+.++.....+++++|+.+|.+.+|.|+|.+++..+..++.+...+.++.+|++||.+++ ....+
T Consensus 532 eqyi~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e 610 (671)
T KOG4347|consen 532 EQYIDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDRE 610 (671)
T ss_pred HHHHHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccc
Confidence 56667777777777766677788999999999999999999999999999999999999999999999999 88888
Q ss_pred HH
Q psy8447 149 EM 150 (229)
Q Consensus 149 e~ 150 (229)
|.
T Consensus 611 ~~ 612 (671)
T KOG4347|consen 611 EV 612 (671)
T ss_pred cc
Confidence 87
No 80
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.05 E-value=6.2e-06 Score=40.81 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=15.9
Q ss_pred HHHHHHhcCCCCCcccHHHHHHH
Q psy8447 131 KFTFLIYDLNNDGFITREEMFQL 153 (229)
Q Consensus 131 ~~~F~~~D~~~~G~I~~~e~~~~ 153 (229)
+.+|+.+|.|++|.|+.+||.++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 45677777777777777777664
No 81
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.04 E-value=1.3e-05 Score=67.20 Aligned_cols=55 Identities=31% Similarity=0.562 Sum_probs=48.0
Q ss_pred ChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhc
Q psy8447 125 TNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTD 201 (229)
Q Consensus 125 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~ 201 (229)
.....++.+|+.||.+++|.|+.+||.. +..+|..+|.|+||.|+++||...+..
T Consensus 331 ~~~~~l~~aF~~~D~dgdG~Is~~E~~~----------------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 331 AFTHAAQEIFRLYDLDGDGFITREEWLG----------------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred hhhHHHHHHHHHhCCCCCCcCcHHHHHH----------------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 4567889999999999999999999831 356899999999999999999998764
No 82
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.02 E-value=2.9e-05 Score=44.96 Aligned_cols=50 Identities=16% Similarity=0.148 Sum_probs=38.1
Q ss_pred ceeHHHHHHHHHhhccCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q psy8447 108 VIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNS 157 (229)
Q Consensus 108 ~I~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~ 157 (229)
+++|.|...++..+.-...++-+..+|+.+|++++|.+..+||..+++.+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 36888888888888777888888889999999999999999998888653
No 83
>KOG0751|consensus
Probab=98.00 E-value=0.00018 Score=60.73 Aligned_cols=101 Identities=17% Similarity=0.188 Sum_probs=74.8
Q ss_pred hHHHHHHhccCccCCCC-CCHHHHHHHHhhhcCCCcHHHHHHHHHHHHccCCCCceeHHHHHHHHHhhcc----------
Q psy8447 55 SNVTERYKGFSPFSFQG-LDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLR---------- 123 (229)
Q Consensus 55 ~~~~~l~~~f~~~d~~~-i~~~ef~~~l~~~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~---------- 123 (229)
.++.++...-...-+++ |+..||+.+=.-++ .++..-..+|..||+.++|.++++++..++.....
T Consensus 73 ~~~v~Lla~iaD~tKDglisf~eF~afe~~lC---~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~ 149 (694)
T KOG0751|consen 73 DKIVRLLASIADQTKDGLISFQEFRAFESVLC---APDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDS 149 (694)
T ss_pred hHHHHHHHhhhhhcccccccHHHHHHHHhhcc---CchHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCc
Confidence 34445555444455555 99999988755543 34444678999999999999999999999887321
Q ss_pred -------------------------CChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh
Q psy8447 124 -------------------------GTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSL 158 (229)
Q Consensus 124 -------------------------~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~ 158 (229)
....+..+++|...|..++|.||.-+|..++-.+-
T Consensus 150 efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qafr~~d~~~ng~is~Ldfq~imvt~~ 209 (694)
T KOG0751|consen 150 EFIKLHFGDIRKRHLNYAEFTQFLHEFQLEHAEQAFREKDKAKNGFISVLDFQDIMVTIR 209 (694)
T ss_pred chHHHHhhhHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcccCCCeeeeechHhhhhhhh
Confidence 12335678899999999999999999998876543
No 84
>KOG0040|consensus
Probab=97.98 E-value=0.00027 Score=66.61 Aligned_cols=139 Identities=20% Similarity=0.224 Sum_probs=102.0
Q ss_pred hcCCChhHHHHHHhccCccCCC---CCCHHHHHHHHhhhcCCC------cHHHHHHHHHHHHccCCCCceeHHHHHHHHH
Q psy8447 49 VSGLPPSNVTERYKGFSPFSFQ---GLDRVVFRELLHNTFDLV------TEEILMERIFCAFDRLCDGVIHLDEWVLGLS 119 (229)
Q Consensus 49 ~~~l~~~~~~~l~~~f~~~d~~---~i~~~ef~~~l~~~~~~~------~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~ 119 (229)
..|.+...+..+--.|+.+|.. -++..+|..+++.++... .+++..+.++...|++.+|.|+..+|..++.
T Consensus 2244 ~~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi 2323 (2399)
T KOG0040|consen 2244 HNGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMI 2323 (2399)
T ss_pred cCCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHH
Confidence 3567777777766666666554 399999999999986654 2233578999999999999999999999988
Q ss_pred hhccC--ChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCC----CCCcccHH
Q psy8447 120 CFLRG--TNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYD----KDGKISFQ 193 (229)
Q Consensus 120 ~~~~~--~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~----~dg~Is~~ 193 (229)
.-... ...+.+..+|+..|. +..||+.+++...| +++..+-.+..|-..+++. -.+.+.|.
T Consensus 2324 ~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~l------------treqaefc~s~m~~~~e~~~~~s~q~~l~y~ 2390 (2399)
T KOG0040|consen 2324 SKETENILSSEEIEDAFRALDA-GKPYVTKEELYQNL------------TREQAEFCMSKMKPYAETSSGRSDQVALDYK 2390 (2399)
T ss_pred hcccccccchHHHHHHHHHhhc-CCccccHHHHHhcC------------CHHHHHHHHHHhhhhcccccCCCccccccHH
Confidence 75432 334589999999999 88999999976554 3344444455666666653 22468999
Q ss_pred HHHHHHh
Q psy8447 194 DFQQSVT 200 (229)
Q Consensus 194 ef~~~~~ 200 (229)
+|..-+.
T Consensus 2391 dfv~sl~ 2397 (2399)
T KOG0040|consen 2391 DFVNSLF 2397 (2399)
T ss_pred HHHHHHh
Confidence 9987553
No 85
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.91 E-value=1.5e-05 Score=39.43 Aligned_cols=24 Identities=50% Similarity=0.794 Sum_probs=21.6
Q ss_pred HHHHHHcCCCCCCcccHHHHHHHH
Q psy8447 176 ELALRKMDYDKDGKISFQDFQQSV 199 (229)
Q Consensus 176 ~~~~~~~d~~~dg~Is~~ef~~~~ 199 (229)
+.+|+.+|.|+||.||.+||.+++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHC
Confidence 568999999999999999999864
No 86
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.76 E-value=1.8e-05 Score=54.84 Aligned_cols=66 Identities=29% Similarity=0.507 Sum_probs=45.4
Q ss_pred ccCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHH
Q psy8447 122 LRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQS 198 (229)
Q Consensus 122 ~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~ 198 (229)
........+.+.|...|.|++|.|+..|+..+...+. + .+. -++.+++..|.|+||.||..||..+
T Consensus 48 ~~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~---~----~e~----C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 48 SYSECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLM---P----PEH----CARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp TGGGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTS---T----TGG----GHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred chhhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHh---h----hHH----HHHHHHHHcCCCCCCCCCHHHHccC
Confidence 3344556788999999999999999999987765331 1 111 3677999999999999999999764
No 87
>KOG0040|consensus
Probab=97.68 E-value=9.3e-05 Score=69.60 Aligned_cols=78 Identities=23% Similarity=0.340 Sum_probs=63.0
Q ss_pred CChHH---HHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHh
Q psy8447 124 GTNEE---LIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVT 200 (229)
Q Consensus 124 ~~~~~---~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~ 200 (229)
+.+++ ++..+|+.||.+.+|.++..+|...|+.+|...|..+..+. +..++.++...|++.+|.|+..||.++|.
T Consensus 2246 GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~--~p~fe~~ld~vDP~r~G~Vsl~dY~afmi 2323 (2399)
T KOG0040|consen 2246 GVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEP--EPEFEEILDLVDPNRDGYVSLQDYMAFMI 2323 (2399)
T ss_pred CCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCC--ChhHHHHHHhcCCCCcCcccHHHHHHHHH
Confidence 45554 45678999999999999999999999999887754443211 11488899999999999999999999998
Q ss_pred cCh
Q psy8447 201 DEP 203 (229)
Q Consensus 201 ~~~ 203 (229)
.++
T Consensus 2324 ~~E 2326 (2399)
T KOG0040|consen 2324 SKE 2326 (2399)
T ss_pred hcc
Confidence 664
No 88
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.56 E-value=0.00038 Score=47.36 Aligned_cols=63 Identities=24% Similarity=0.372 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhc
Q psy8447 127 EELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTD 201 (229)
Q Consensus 127 ~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~ 201 (229)
......+|+..|. ++|+|+.++.+.++...+. -.+.+.+|+...|.+++|.++++||.-+|.-
T Consensus 9 ~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L-----------~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 9 KQKYDQIFQSLDP-QDGKISGDQAREFFMKSGL-----------PRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp HHHHHHHHHCTSS-STTEEEHHHHHHHHHHTTS-----------SHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCC-----------CHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 3455667777664 4677777777777654321 1124666777777777777777777776653
No 89
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.53 E-value=0.00019 Score=37.39 Aligned_cols=26 Identities=31% Similarity=0.440 Sum_probs=23.3
Q ss_pred HHHHHHHHccCCCCceeHHHHHHHHH
Q psy8447 94 MERIFCAFDRLCDGVIHLDEWVLGLS 119 (229)
Q Consensus 94 ~~~lf~~~d~~~~g~I~~~ef~~~~~ 119 (229)
++.+|+.+|.|++|.|+++||..++.
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 57899999999999999999999987
No 90
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.41 E-value=0.00069 Score=46.11 Aligned_cols=59 Identities=24% Similarity=0.277 Sum_probs=37.6
Q ss_pred HHHHHHHccCCCCceeHHHHHHHHHhhccCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q psy8447 95 ERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRN 156 (229)
Q Consensus 95 ~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~ 156 (229)
..+|...+. ++|.|+-.+-..++... +.+.+.+..+|.+.|.+++|+++.+||.-+++-
T Consensus 13 ~~~F~~l~~-~~g~isg~~a~~~f~~S--~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 13 DQIFQSLDP-QDGKISGDQAREFFMKS--GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp HHHHHCTSS-STTEEEHHHHHHHHHHT--TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred HHHHHhcCC-CCCeEeHHHHHHHHHHc--CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 445555553 45777777776665533 456667777777777777777777777766653
No 91
>KOG2562|consensus
Probab=97.36 E-value=0.00075 Score=56.69 Aligned_cols=91 Identities=15% Similarity=0.246 Sum_probs=70.9
Q ss_pred HHHHccCCCCceeHHHHHHHHHhhccCChHHHHHHHHH----HhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHH
Q psy8447 98 FCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFL----IYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRD 173 (229)
Q Consensus 98 f~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~~~~F~----~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 173 (229)
|..+|.|.+|.|+-+++..+-... .+..-+.++|. .+-...+|.+++++|..++-++-.+.. +..
T Consensus 284 FweLD~Dhd~lidk~~L~ry~d~t---lt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t-----~~S--- 352 (493)
T KOG2562|consen 284 FWELDTDHDGLIDKEDLKRYGDHT---LTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDT-----PAS--- 352 (493)
T ss_pred HhhhccccccccCHHHHHHHhccc---hhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCC-----ccc---
Confidence 677899999999999987766544 34566788998 455668999999999999987633322 222
Q ss_pred HHHHHHHHcCCCCCCcccHHHHHHHHh
Q psy8447 174 LVELALRKMDYDKDGKISFQDFQQSVT 200 (229)
Q Consensus 174 ~~~~~~~~~d~~~dg~Is~~ef~~~~~ 200 (229)
++-+|+.+|.+++|.++..|..-+..
T Consensus 353 -leYwFrclDld~~G~Lt~~el~~fye 378 (493)
T KOG2562|consen 353 -LEYWFRCLDLDGDGILTLNELRYFYE 378 (493)
T ss_pred -hhhheeeeeccCCCcccHHHHHHHHH
Confidence 67799999999999999998776654
No 92
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.31 E-value=0.0011 Score=38.42 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=37.4
Q ss_pred CCHHHHHHHHhhhcCCCcHHHHHHHHHHHHccCCCCceeHHHHHHHHHhh
Q psy8447 72 LDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCF 121 (229)
Q Consensus 72 i~~~ef~~~l~~~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~ 121 (229)
+++.++..+++.+.-.+... .+..+|+..|++++|.+..+||..++..+
T Consensus 2 msf~Evk~lLk~~NI~~~~~-yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDE-YARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp BEHHHHHHHHHHTT----HH-HHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHH-HHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 56788888888876655554 48899999999999999999999988754
No 93
>KOG1029|consensus
Probab=97.06 E-value=0.0079 Score=53.73 Aligned_cols=135 Identities=16% Similarity=0.221 Sum_probs=97.6
Q ss_pred CChhHHHHHHhccCccCCCC--CCHHHHHHHHhhhcCCCcHHHHHHHHHHHHccCCCCceeHHHHHHHHHh---------
Q psy8447 52 LPPSNVTERYKGFSPFSFQG--LDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSC--------- 120 (229)
Q Consensus 52 l~~~~~~~l~~~f~~~d~~~--i~~~ef~~~l~~~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~--------- 120 (229)
++.++-......|.....+. |+-.+-+.++-..+ -+..++..|+.+.|.|+||+++-.||..++..
T Consensus 10 vT~~Er~K~~~qF~~Lkp~~gfitg~qArnfflqS~---LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkLqG~~ 86 (1118)
T KOG1029|consen 10 VTDEERQKHDAQFGQLKPGQGFITGDQARNFFLQSG---LPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQGIQ 86 (1118)
T ss_pred cchHHHHHHHHHHhccCCCCCccchHhhhhhHHhcC---CChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHhcCCc
Confidence 45555566666777666543 88788777776643 23344678888999999999999999887776
Q ss_pred -----------------------------------------------------------------h--------------
Q psy8447 121 -----------------------------------------------------------------F-------------- 121 (229)
Q Consensus 121 -----------------------------------------------------------------~-------------- 121 (229)
+
T Consensus 87 lP~~LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~spl~ 166 (1118)
T KOG1029|consen 87 LPPVLPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSPLP 166 (1118)
T ss_pred CCCCCChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCCCC
Confidence 0
Q ss_pred -----cc-----------------CChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHH
Q psy8447 122 -----LR-----------------GTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELAL 179 (229)
Q Consensus 122 -----~~-----------------~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (229)
.. ....-+.+.+|+..|+...|++|...-+.+|-.. +.+ ...+.+|+
T Consensus 167 ~~ss~se~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS--~Lp---------q~~LA~IW 235 (1118)
T KOG1029|consen 167 HDSSVSEGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQS--GLP---------QNQLAHIW 235 (1118)
T ss_pred CCcchhhcCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHhc--CCc---------hhhHhhhe
Confidence 00 0111245689999999999999999988888543 222 12377789
Q ss_pred HHcCCCCCCcccHHHHHHHHh
Q psy8447 180 RKMDYDKDGKISFQDFQQSVT 200 (229)
Q Consensus 180 ~~~d~~~dg~Is~~ef~~~~~ 200 (229)
-.-|.|+||+++-+||+-.|.
T Consensus 236 ~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 236 TLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred eeeccCCCCcccHHHHHHHHH
Confidence 999999999999999988764
No 94
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.06 E-value=0.00034 Score=48.45 Aligned_cols=61 Identities=26% Similarity=0.281 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHccCCCCceeHHHHHHHHHhhccCChHHHHHHHHHHhcCCCCCcccHHHHHH
Q psy8447 90 EEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQ 152 (229)
Q Consensus 90 ~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~ 152 (229)
....+...|..+|.|+||.|+..|+..+...+ ...+.=++.+|+..|.|++|.||..|+..
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 34457888999999999999999988877655 23333478899999999999999999864
No 95
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.05 E-value=0.00081 Score=33.42 Aligned_cols=26 Identities=38% Similarity=0.597 Sum_probs=17.4
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHH
Q psy8447 130 IKFTFLIYDLNNDGFITREEMFQLLR 155 (229)
Q Consensus 130 ~~~~F~~~D~~~~G~I~~~e~~~~l~ 155 (229)
++.+|+.+|.+++|.|+..+|..+++
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 45567777777777777777666654
No 96
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.57 E-value=0.0038 Score=30.80 Aligned_cols=27 Identities=37% Similarity=0.671 Sum_probs=23.6
Q ss_pred HHHHHHHcCCCCCCcccHHHHHHHHhc
Q psy8447 175 VELALRKMDYDKDGKISFQDFQQSVTD 201 (229)
Q Consensus 175 ~~~~~~~~d~~~dg~Is~~ef~~~~~~ 201 (229)
++.+|+.+|.+++|.|++.+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 456899999999999999999998764
No 97
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=96.50 E-value=0.014 Score=38.45 Aligned_cols=77 Identities=17% Similarity=0.251 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhh--cCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcChH
Q psy8447 127 EELIKFTFLIYDLNNDGFITREEMFQLLRNSLI--SHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPL 204 (229)
Q Consensus 127 ~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~~~ 204 (229)
.++.+.+|..+ .|++|.++..-+..+|+.+.. ....+..+-..++..++..|... .....|+.++|+.++...|.
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ePq 78 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSEPQ 78 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT--T
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhCCC
Confidence 46789999999 788999999999999987531 11111111122566688888876 35667999999999999986
Q ss_pred HH
Q psy8447 205 LL 206 (229)
Q Consensus 205 ~~ 206 (229)
.+
T Consensus 79 ~l 80 (90)
T PF09069_consen 79 SL 80 (90)
T ss_dssp TT
T ss_pred ee
Confidence 43
No 98
>KOG0046|consensus
Probab=96.49 E-value=0.012 Score=50.47 Aligned_cols=65 Identities=22% Similarity=0.362 Sum_probs=52.9
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHh
Q psy8447 129 LIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVT 200 (229)
Q Consensus 129 ~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~ 200 (229)
.++..|...| +++|+|+..|+..++.+..... ....++.++.++...+.|.+|.|+|++|+.++.
T Consensus 20 ~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~------g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 20 ELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPL------GYFVREEIKEILGEVGVDADGRVEFEEFVGIFL 84 (627)
T ss_pred HHHHHHHhhc-CCCCeeehHHhHHHHHHhcccc------cchhHHHHHHHHhccCCCcCCccCHHHHHHHHH
Confidence 4677899999 9999999999999998764322 113455688999999999999999999999654
No 99
>KOG0169|consensus
Probab=96.41 E-value=0.28 Score=44.24 Aligned_cols=139 Identities=13% Similarity=0.209 Sum_probs=95.6
Q ss_pred HHHHHHhccCccCCCCCCHHHHHHHHhhhcCCCcHHHHHHHHHHHHccCCCCceeHHHHHHHHHhhccCChHHHHHHHHH
Q psy8447 56 NVTERYKGFSPFSFQGLDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFL 135 (229)
Q Consensus 56 ~~~~l~~~f~~~d~~~i~~~ef~~~l~~~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~~~~F~ 135 (229)
.+..++..++....+.++..+...++..+...+.... +..+|+..+...++.+...+|..+........ ++..+|.
T Consensus 137 wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~-~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~f~ 212 (746)
T KOG0169|consen 137 WIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESK-ARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFLFV 212 (746)
T ss_pred HHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHH-HHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHHHH
Confidence 3445555555555555888888888888766555544 67888888888899999999999888776443 6778888
Q ss_pred HhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcC
Q psy8447 136 IYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDE 202 (229)
Q Consensus 136 ~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~ 202 (229)
.+-.+ .++++.+++..++..... .+..+.+..+++++..=..-..-..+.++++.|..+|...
T Consensus 213 ~~s~~-~~~ls~~~L~~Fl~~~q~---e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S~ 275 (746)
T KOG0169|consen 213 QYSHG-KEYLSTDDLLRFLEEEQG---EDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFSP 275 (746)
T ss_pred HHhCC-CCccCHHHHHHHHHHhcc---cccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcCc
Confidence 88555 899999999999987622 2223444444433322122223345679999999988744
No 100
>KOG0046|consensus
Probab=96.03 E-value=0.032 Score=47.94 Aligned_cols=76 Identities=14% Similarity=0.097 Sum_probs=53.3
Q ss_pred ccCcCcHHHHHHHHHHHHHHhhcCCCCCCCCCCchhhhHhhcCCChhHHHHHHhccCccCCCCCCHHHHHHHHhhhcCC-
Q psy8447 9 LLPLSFRQEVETLCKIFKKLLNSSSNAGVPISTSTPVVVQVSGLPPSNVTERYKGFSPFSFQGLDRVVFRELLHNTFDL- 87 (229)
Q Consensus 9 ~~~~~~~~~i~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~f~~~d~~~i~~~ef~~~l~~~~~~- 87 (229)
..+.+|++|+..+++.|.+++ +++|. ++..++..++......
T Consensus 9 ~~~~~tq~El~~l~~kF~~~d-~~~G~------------------------------------v~~~~l~~~f~k~~~~~ 51 (627)
T KOG0046|consen 9 LQSQLTQEELRELKEKFNKLD-DQKGY------------------------------------VTVYELPDAFKKAKLPL 51 (627)
T ss_pred hcccccHHHHHHHHHHHHhhc-CCCCe------------------------------------eehHHhHHHHHHhcccc
Confidence 346778888888888888888 55555 5566666666655331
Q ss_pred -CcHHHHHHHHHHHHccCCCCceeHHHHHHHHHhh
Q psy8447 88 -VTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCF 121 (229)
Q Consensus 88 -~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~ 121 (229)
.-..+.++.+....+.|.+|.|+|++|+.++..+
T Consensus 52 g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 52 GYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred cchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 1224447788888888999999999999866553
No 101
>KOG4666|consensus
Probab=96.01 E-value=0.021 Score=46.19 Aligned_cols=99 Identities=13% Similarity=0.055 Sum_probs=73.5
Q ss_pred HHHHHhccCccCCCCCCHHHHHHHHhhhcCCCcHHHHHHHHHHHHccCCCCceeHHHHHHHHHhhccCChHHHHHHHHHH
Q psy8447 57 VTERYKGFSPFSFQGLDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLI 136 (229)
Q Consensus 57 ~~~l~~~f~~~d~~~i~~~ef~~~l~~~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~~~~F~~ 136 (229)
+...+..|+....+.++..+-...+.-++.......+++..|+.|+.+.||.++=.+|-.++... .+...-++.-.|..
T Consensus 261 l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~-lgv~~l~v~~lf~~ 339 (412)
T KOG4666|consen 261 LAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVV-LGVEVLRVPVLFPS 339 (412)
T ss_pred hhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHh-cCcceeeccccchh
Confidence 44455555555555576666655555556556667778999999999999999887776666553 34555567789999
Q ss_pred hcCCCCCcccHHHHHHHHHH
Q psy8447 137 YDLNNDGFITREEMFQLLRN 156 (229)
Q Consensus 137 ~D~~~~G~I~~~e~~~~l~~ 156 (229)
.+...+|+|++++|+++...
T Consensus 340 i~q~d~~ki~~~~f~~fa~~ 359 (412)
T KOG4666|consen 340 IEQKDDPKIYASNFRKFAAT 359 (412)
T ss_pred hhcccCcceeHHHHHHHHHh
Confidence 99999999999999998754
No 102
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=95.91 E-value=0.037 Score=35.90 Aligned_cols=67 Identities=21% Similarity=0.350 Sum_probs=45.0
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCC----CCCcccHHHHHHHHhcCh
Q psy8447 129 LIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYD----KDGKISFQDFQQSVTDEP 203 (229)
Q Consensus 129 ~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~----~dg~Is~~ef~~~~~~~~ 203 (229)
++..+|..|-. +.+.+|.++|..+|+.--.. ...+.+. +..++..+..+ ..+.+|++.|..+|....
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~---~~~~~~~----~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGE---PRLTDEQ----AKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS----TTSSHHH----HHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhcc---ccCcHHH----HHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 36778888855 78899999999998764221 1123444 44455554433 468999999999997654
No 103
>KOG3866|consensus
Probab=95.81 E-value=0.019 Score=46.03 Aligned_cols=70 Identities=23% Similarity=0.416 Sum_probs=51.0
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCC----ChHHHHH---HHHHHHHHcCCCCCCcccHHHHHHHHh
Q psy8447 131 KFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDED----PDEGVRD---LVELALRKMDYDKDGKISFQDFQQSVT 200 (229)
Q Consensus 131 ~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~----~~~~~~~---~~~~~~~~~d~~~dg~Is~~ef~~~~~ 200 (229)
+.+|.+.|.|++|+++..|+..++..-+.+.-+... -.++.++ +-.++++.+|+|.|..||++||+..--
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~ 323 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTD 323 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhh
Confidence 467999999999999999999887754432222111 1122222 355789999999999999999998654
No 104
>KOG0169|consensus
Probab=95.57 E-value=0.17 Score=45.63 Aligned_cols=68 Identities=21% Similarity=0.190 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHccCCCCceeHHHHHHHHHhhccCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh
Q psy8447 91 EILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSL 158 (229)
Q Consensus 91 ~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~ 158 (229)
...+..+|...|++++|.+++.+-..++..+.....+..+...|+..|..++|.+...++.++.....
T Consensus 135 ~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~ 202 (746)
T KOG0169|consen 135 EHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELT 202 (746)
T ss_pred HHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhc
Confidence 45578899999999999999999999999988888888999999999999999999999999887653
No 105
>KOG0039|consensus
Probab=95.49 E-value=0.046 Score=49.44 Aligned_cols=94 Identities=23% Similarity=0.339 Sum_probs=76.2
Q ss_pred CCceeHHHHHHHHHhhccCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCC
Q psy8447 106 DGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYD 185 (229)
Q Consensus 106 ~g~I~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 185 (229)
+| |+++||. ....+.+.+++.+|.++|. ++|.++.+++..++.....-.. .........+....++...|.+
T Consensus 2 ~~-~~~~~~~-----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 73 (646)
T KOG0039|consen 2 EG-ISFQELK-----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANW-LSLIKKQTEEYAALIMEELDPD 73 (646)
T ss_pred CC-cchhhhc-----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhh-hhhhhhhhhHHHHHhhhhcccc
Confidence 56 8999998 5567889999999999998 8999999999999987643322 3334445566788899999999
Q ss_pred CCCcccHHHHHHHHhcChHHHH
Q psy8447 186 KDGKISFQDFQQSVTDEPLLLE 207 (229)
Q Consensus 186 ~dg~Is~~ef~~~~~~~~~~~~ 207 (229)
..|.+.++++..++...|....
T Consensus 74 ~~~y~~~~~~~~ll~~~~~~~~ 95 (646)
T KOG0039|consen 74 HKGYITNEDLEILLLQIPTLLF 95 (646)
T ss_pred ccceeeecchhHHHHhchHHHH
Confidence 9999999999999998886444
No 106
>KOG4578|consensus
Probab=95.40 E-value=0.0088 Score=48.26 Aligned_cols=69 Identities=23% Similarity=0.261 Sum_probs=54.6
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcChH
Q psy8447 128 ELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPL 204 (229)
Q Consensus 128 ~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~~~ 204 (229)
..+.+-|...|+|.++.|.+.|+..+=+-+.... ....-.+.+++..|.|+|-.||+.||+.++...+.
T Consensus 333 Rvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s--------~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~~ 401 (421)
T KOG4578|consen 333 RVVHWYFNQLDKNSNNDIERREWKPFKRVLLKKS--------KPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEKE 401 (421)
T ss_pred heeeeeeeeecccccCccchhhcchHHHHHHhhc--------cHHHHhhhcchhcccCCCceecHHHHhhhhccccc
Confidence 3577889999999999999999887755443211 23445788999999999999999999998875543
No 107
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=95.38 E-value=0.059 Score=34.92 Aligned_cols=61 Identities=18% Similarity=0.168 Sum_probs=48.7
Q ss_pred HHHHHHHHccCCCCceeHHHHHHHHHhhccC--ChHHHHHHHHHHhcCC----CCCcccHHHHHHHHH
Q psy8447 94 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRG--TNEELIKFTFLIYDLN----NDGFITREEMFQLLR 155 (229)
Q Consensus 94 ~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~--~~~~~~~~~F~~~D~~----~~G~I~~~e~~~~l~ 155 (229)
+..+|..+.. +.+.|+.++|..++....+. .+.+.+..++..|..+ ..+.+|.++|..+|.
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHC
Confidence 5678888866 67899999999999876654 4677888888888655 479999999999985
No 108
>PLN02952 phosphoinositide phospholipase C
Probab=95.24 E-value=0.29 Score=43.71 Aligned_cols=94 Identities=12% Similarity=0.104 Sum_probs=64.5
Q ss_pred CCCceeHHHHHHHHHhhcc--CChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHc
Q psy8447 105 CDGVIHLDEWVLGLSCFLR--GTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKM 182 (229)
Q Consensus 105 ~~g~I~~~ef~~~~~~~~~--~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (229)
+.|.++|.+|..+...+.. ..+..++..+|..|-.+ .+.++.++|..+|...-.. ...+.+....+++.++...
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~e---~~~~~~~~~~i~~~~~~~~ 88 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQDE---LDCTLAEAQRIVEEVINRR 88 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCC---cCCCHHHHHHHHHHHHhhc
Confidence 4689999999988887742 23567899999999654 4789999999999875321 1234444444555444432
Q ss_pred C---CCCCCcccHHHHHHHHhcC
Q psy8447 183 D---YDKDGKISFQDFQQSVTDE 202 (229)
Q Consensus 183 d---~~~dg~Is~~ef~~~~~~~ 202 (229)
. ..+.+.++++.|..++...
T Consensus 89 ~~~~~~~~~~l~~~~F~~~l~s~ 111 (599)
T PLN02952 89 HHVTRYTRHGLNLDDFFHFLLYD 111 (599)
T ss_pred cccccccccCcCHHHHHHHHcCc
Confidence 2 1233469999999999754
No 109
>KOG3555|consensus
Probab=95.23 E-value=0.053 Score=44.22 Aligned_cols=63 Identities=17% Similarity=0.229 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcC
Q psy8447 127 EELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDE 202 (229)
Q Consensus 127 ~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~ 202 (229)
...+.++|..+|.|.+|.++..|+..+-.. .-+.-++.+|...|...||.||-.||..++.+.
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~ld-------------knE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~ 311 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIELD-------------KNEACIKPFFNSCDTYKDGSISTNEWCYCFQKS 311 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhhcc-------------CchhHHHHHHhhhcccccCccccchhhhhhccC
Confidence 467899999999999999999999876532 112247889999999999999999999988643
No 110
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=95.21 E-value=0.4 Score=35.46 Aligned_cols=69 Identities=17% Similarity=0.148 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCC--ChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHH
Q psy8447 126 NEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDED--PDEGVRDLVELALRKMDYDKDGKISFQDFQQSV 199 (229)
Q Consensus 126 ~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~ 199 (229)
..+++..+|..|+..+.+.+|..|+.++++.- +.+.+.. .....| -..++.. -.+.||.++.++.+.+.
T Consensus 94 vp~kFe~iF~kya~~~~d~LT~~E~~~m~~~n--r~~~D~~GW~a~~~E--W~~~y~L-~~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 94 VPQKFEEIFSKYAKTGPDALTLRELWRMLKGN--RNANDPFGWFAAFFE--WGALYIL-AKDKDGFLSKEDIRGVY 164 (174)
T ss_pred CHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhc--cccCCcchhhhhhhH--HHHHHHH-HcCcCCcEeHHHHhhhc
Confidence 34789999999999999999999999999852 1111110 001111 1111111 25678999998877653
No 111
>KOG4065|consensus
Probab=94.97 E-value=0.082 Score=36.15 Aligned_cols=66 Identities=23% Similarity=0.204 Sum_probs=47.9
Q ss_pred CcHHHHHHHHHHHHccCCCCceeHHHHHHHHHhhccC----------ChHH----HHHHHHHHhcCCCCCcccHHHHHHH
Q psy8447 88 VTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRG----------TNEE----LIKFTFLIYDLNNDGFITREEMFQL 153 (229)
Q Consensus 88 ~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~----------~~~~----~~~~~F~~~D~~~~G~I~~~e~~~~ 153 (229)
+++++.---.|...|-|++|.|+--|++.++...... ..+. .+..+.+--|.|++|+|++.||.+.
T Consensus 63 mtpeqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 63 MTPEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred CCHHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 4555543446788899999999999999999886541 1222 3445566678889999999998764
No 112
>KOG4286|consensus
Probab=94.02 E-value=0.82 Score=41.36 Aligned_cols=160 Identities=9% Similarity=0.094 Sum_probs=101.5
Q ss_pred CchhhhHhhcCCChhHHHHHHhccCccCCC---C-CCHHHHHHHHhhh-------cCC-----CcHHHHHHHHHHHHccC
Q psy8447 41 TSTPVVVQVSGLPPSNVTERYKGFSPFSFQ---G-LDRVVFRELLHNT-------FDL-----VTEEILMERIFCAFDRL 104 (229)
Q Consensus 41 ~~~~~~~~~~~l~~~~~~~l~~~f~~~d~~---~-i~~~ef~~~l~~~-------~~~-----~~~~~~~~~lf~~~d~~ 104 (229)
+.+..+.+.+.+..-.+.-+.+.|+.-+-. . ++.......+... .+. ...+--+..++..||..
T Consensus 403 mKlr~LQK~l~ldlv~ltl~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~ 482 (966)
T KOG4286|consen 403 MKLRRLQKALCLDLLSLSLALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTG 482 (966)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccC
Confidence 334455555555555555555555544332 2 6666655554443 111 12233356678999999
Q ss_pred CCCceeHHHHHHHHHhhccCChHHHHHHHHHHhcCCCCCcccHHHHHH-------HHHHHhhc--CCCCCCChHHHHHHH
Q psy8447 105 CDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQ-------LLRNSLIS--HPQDEDPDEGVRDLV 175 (229)
Q Consensus 105 ~~g~I~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~-------~l~~~~~~--~~~~~~~~~~~~~~~ 175 (229)
.+|.|..-+|...+..+++...+++++.+|...-.++.-.+ ...|-. +.+.+|.. -...+ ++--+
T Consensus 483 R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAfGgsN-----vepsv 556 (966)
T KOG4286|consen 483 RTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAFGGSN-----IEPSV 556 (966)
T ss_pred CCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhhcCCC-----CChHH
Confidence 99999999999999999999999999999999977766654 433433 33333310 00111 11236
Q ss_pred HHHHHHcCCCCCCcccHHHHHHHHhcChHHHHH
Q psy8447 176 ELALRKMDYDKDGKISFQDFQQSVTDEPLLLEA 208 (229)
Q Consensus 176 ~~~~~~~d~~~dg~Is~~ef~~~~~~~~~~~~~ 208 (229)
+..|... ++.-.|++..|..|+...|-.+.+
T Consensus 557 rsCF~~v--~~~pei~~~~f~dw~~~epqsmVw 587 (966)
T KOG4286|consen 557 RSCFQFV--NNKPEIEAALFLDWMRLEPQSMVW 587 (966)
T ss_pred HHHHHhc--CCCCcchHHHHHHHhccCcchhhH
Confidence 7777733 566789999999999988864443
No 113
>KOG3555|consensus
Probab=92.10 E-value=0.43 Score=39.14 Aligned_cols=59 Identities=24% Similarity=0.197 Sum_probs=50.2
Q ss_pred HHHHHHHHccCCCCceeHHHHHHHHHhhccCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q psy8447 94 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRN 156 (229)
Q Consensus 94 ~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~ 156 (229)
+..||..+|.|.++.++-.|+..+- ..-.+.=++.+|+..|...+|.|+-.|++..+..
T Consensus 252 ~gWMFnklD~N~Dl~Ld~sEl~~I~----ldknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 252 LGWMFNKLDTNYDLLLDQSELRAIE----LDKNEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred hhhhhhccccccccccCHHHhhhhh----ccCchhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 6889999999999999999966543 3455667899999999999999999999987754
No 114
>KOG4578|consensus
Probab=91.39 E-value=0.14 Score=41.53 Aligned_cols=64 Identities=22% Similarity=0.248 Sum_probs=52.7
Q ss_pred HHHHHHHHHccCCCCceeHHHHHHHHHhhccCCh-HHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q psy8447 93 LMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTN-EELIKFTFLIYDLNNDGFITREEMFQLLRN 156 (229)
Q Consensus 93 ~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~~~-~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~ 156 (229)
.+...|..+|+|.++.|+..|+..+-..+..... ..=.+.+|+..|.|+|-.|+..|+...|..
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 5566788999999999999998887777665433 345788999999999999999999988753
No 115
>KOG2243|consensus
Probab=90.75 E-value=0.86 Score=44.20 Aligned_cols=82 Identities=21% Similarity=0.487 Sum_probs=61.0
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcC--------hH
Q psy8447 133 TFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDE--------PL 204 (229)
Q Consensus 133 ~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~--------~~ 204 (229)
.|+.||+||.|.|+..+|.+++..- +.- ++. .++.++.....+.+...+|++|..-+..- ..
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~--k~y----tqs----e~dfllscae~dend~~~y~dfv~rfhepakdigfnvav 4131 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGH--KHY----TQS----EIDFLLSCAEADENDMFDYEDFVDRFHEPAKDIGFNVAV 4131 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcc--ccc----hhH----HHHHHHHhhccCccccccHHHHHHHhcCchhhcCcchhh
Confidence 4888999999999999999998632 111 111 26678888888889999999999876532 23
Q ss_pred HHHHhcccCCChHHHHHHHh
Q psy8447 205 LLEAFGQCLPSDAARQSFLS 224 (229)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~ 224 (229)
++..++.++|.+.....|+.
T Consensus 4132 lltnlsehmpndsrlk~~ld 4151 (5019)
T KOG2243|consen 4132 LLTNLSEHMPNDSRLKCFLD 4151 (5019)
T ss_pred hhhhhHhhCCCchhHHHHHh
Confidence 66677888888877766654
No 116
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=90.15 E-value=0.26 Score=36.48 Aligned_cols=123 Identities=15% Similarity=0.137 Sum_probs=72.1
Q ss_pred HHHHHHHHccCCCCceeHHHHHHHHHhhccCChHHHHHHHHHHhcCC---CCCcccHHHHHHHHHHHhh-cC-CC-CC-C
Q psy8447 94 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLN---NDGFITREEMFQLLRNSLI-SH-PQ-DE-D 166 (229)
Q Consensus 94 ~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~~---~~G~I~~~e~~~~l~~~~~-~~-~~-~~-~ 166 (229)
+++=+..||+|+||.|...|-...++.+.-+..-..+-.++=..... ..+.+----|.-.+..+.. ++ ++ .. .
T Consensus 9 LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~YD 88 (174)
T PF05042_consen 9 LQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAYD 88 (174)
T ss_pred HhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccccc
Confidence 55667789999999999999888888886554443332221111100 1121111112222222210 00 00 00 0
Q ss_pred Ch-HHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcChHHHHHhcccCCCh
Q psy8447 167 PD-EGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAFGQCLPSD 216 (229)
Q Consensus 167 ~~-~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~~~~~~~~~~~~~~~ 216 (229)
++ .-+.+.++++|.+++..+.+.+|+.|..+++..+.+....+++..+..
T Consensus 89 ~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~ 139 (174)
T PF05042_consen 89 TEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFF 139 (174)
T ss_pred cCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhh
Confidence 11 123445888999999988899999999999998888777777654433
No 117
>KOG0035|consensus
Probab=90.12 E-value=1.9 Score=40.10 Aligned_cols=97 Identities=12% Similarity=0.034 Sum_probs=70.7
Q ss_pred hHHHHHHhccCccCCCCCCHHHHHHHHhhhcCCCcH-HHHHHH---HHHHHccCCCCceeHHHHHHHHHhhccC-ChHHH
Q psy8447 55 SNVTERYKGFSPFSFQGLDRVVFRELLHNTFDLVTE-EILMER---IFCAFDRLCDGVIHLDEWVLGLSCFLRG-TNEEL 129 (229)
Q Consensus 55 ~~~~~l~~~f~~~d~~~i~~~ef~~~l~~~~~~~~~-~~~~~~---lf~~~d~~~~g~I~~~ef~~~~~~~~~~-~~~~~ 129 (229)
.++..++..|+..+.+.++..+|..++..++..... +..+.. ++..-|.+..|.++|.+|...+..-... ....+
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l~~~~r 826 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDLDTELR 826 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhhcHHHH
Confidence 344556666677777779999999999998876554 222333 4444456666899999999998876543 45568
Q ss_pred HHHHHHHhcCCCCCcccHHHHHH
Q psy8447 130 IKFTFLIYDLNNDGFITREEMFQ 152 (229)
Q Consensus 130 ~~~~F~~~D~~~~G~I~~~e~~~ 152 (229)
+..+|+.+-++.. +|..+|+..
T Consensus 827 ~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 827 AILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred HHHHHHHHHcchh-HHHHHHHHh
Confidence 8899999977766 888888877
No 118
>KOG4347|consensus
Probab=89.90 E-value=0.91 Score=40.41 Aligned_cols=78 Identities=13% Similarity=0.140 Sum_probs=56.5
Q ss_pred ceeHHHHHHHHHhhccC-ChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCC
Q psy8447 108 VIHLDEWVLGLSCFLRG-TNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDK 186 (229)
Q Consensus 108 ~I~~~ef~~~~~~~~~~-~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 186 (229)
.|+|+.|...+..+... .+..-+.++|..+|.+++|.|+..++..-|..+..+ ...+.+.-+++.+|+++
T Consensus 534 yi~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~---------~~~ek~~l~y~lh~~p~ 604 (671)
T KOG4347|consen 534 YIDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAG---------DALEKLKLLYKLHDPPA 604 (671)
T ss_pred HHHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhh---------hHHHHHHHHHhhccCCc
Confidence 35666666666555433 233467899999999999999999999999876532 23334778999999988
Q ss_pred CCcccHHHH
Q psy8447 187 DGKISFQDF 195 (229)
Q Consensus 187 dg~Is~~ef 195 (229)
+ ....++-
T Consensus 605 ~-~~d~e~~ 612 (671)
T KOG4347|consen 605 D-ELDREEV 612 (671)
T ss_pred c-ccccccc
Confidence 8 6666654
No 119
>KOG1707|consensus
Probab=89.28 E-value=3.4 Score=36.62 Aligned_cols=69 Identities=19% Similarity=0.189 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHH--HHhcChHH
Q psy8447 128 ELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ--SVTDEPLL 205 (229)
Q Consensus 128 ~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~--~~~~~~~~ 205 (229)
+.+..+|..||.|+||.++..|+..+........ .+.....+.. -.+..|.++++-|.. .|+..+++
T Consensus 315 ~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~p----W~~~~~~~~t-------~~~~~G~ltl~g~l~~WsL~Tlld~ 383 (625)
T KOG1707|consen 315 RFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSP----WTSSPYKDST-------VKNERGWLTLNGFLSQWSLMTLLDP 383 (625)
T ss_pred HHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCC----CCCCcccccc-------eecccceeehhhHHHHHHHHhhccH
Confidence 4677899999999999999999999987653221 0100000000 124678999999987 33444443
Q ss_pred HH
Q psy8447 206 LE 207 (229)
Q Consensus 206 ~~ 207 (229)
..
T Consensus 384 ~~ 385 (625)
T KOG1707|consen 384 RR 385 (625)
T ss_pred HH
Confidence 33
No 120
>KOG1955|consensus
Probab=88.89 E-value=1.4 Score=37.99 Aligned_cols=70 Identities=14% Similarity=0.208 Sum_probs=47.2
Q ss_pred cCCChhHHHHHHhccCccCCC--C-CCHHHHHHHHhhhcCCCcHHHHHHHHHHHHccCCCCceeHHHHHHHHHhhc
Q psy8447 50 SGLPPSNVTERYKGFSPFSFQ--G-LDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFL 122 (229)
Q Consensus 50 ~~l~~~~~~~l~~~f~~~d~~--~-i~~~ef~~~l~~~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~ 122 (229)
..+++++-+...+.|.....+ + |+-..-++++.+.. ++-.+ +.-||.+.|.+.||-++..||+.++-.+.
T Consensus 223 w~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~E-LshIWeLsD~d~DGALtL~EFcAAfHLVV 295 (737)
T KOG1955|consen 223 WQITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEE-LSHIWELSDVDRDGALTLSEFCAAFHLVV 295 (737)
T ss_pred cccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHH-HHHHHhhcccCccccccHHHHHhhHhhee
Confidence 345556666666666655433 3 77666777776532 33344 57789999999999999999998876643
No 121
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=88.77 E-value=2.2 Score=31.27 Aligned_cols=49 Identities=16% Similarity=0.193 Sum_probs=35.1
Q ss_pred CCHHHHHHHHhhhcC---CCcHHHHHHHHHHHHccCCCCceeHHHHHHHHHhh
Q psy8447 72 LDRVVFRELLHNTFD---LVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCF 121 (229)
Q Consensus 72 i~~~ef~~~l~~~~~---~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~ 121 (229)
|+-..|..+++..+. ..+..+ +..+|..+-..+...|+|++|+.++..+
T Consensus 19 m~~~~F~Kl~kD~~i~d~k~t~td-vDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 19 MDSKNFAKLCKDCGIIDKKLTSTD-VDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp EEHHHHHHHHHHTSS--SSS-HHH-HHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHcCCCCCCCchHH-HHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 888888888887633 234445 6888988766666779999999988765
No 122
>KOG1265|consensus
Probab=87.92 E-value=3.9 Score=38.05 Aligned_cols=92 Identities=13% Similarity=0.164 Sum_probs=64.8
Q ss_pred ceeHHHHHHHHHhhccCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhh-cCCCCCCChHHHHHHHHHHHHHcCCCC
Q psy8447 108 VIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLI-SHPQDEDPDEGVRDLVELALRKMDYDK 186 (229)
Q Consensus 108 ~I~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~ 186 (229)
..+++.|..++..++. ..++..+|..+-.++.-++|.+++..++..--. ...++...+-.-...+..+++.+..|+
T Consensus 204 ~f~~e~f~~~l~klcp---R~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~ 280 (1189)
T KOG1265|consen 204 DFTLEKFYRLLNKLCP---RPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNS 280 (1189)
T ss_pred hccHHHHHHHHHhcCC---chhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCch
Confidence 3567777777777753 356888999999998899999999999986321 111111111112224778888888777
Q ss_pred C----CcccHHHHHHHHhcC
Q psy8447 187 D----GKISFQDFQQSVTDE 202 (229)
Q Consensus 187 d----g~Is~~ef~~~~~~~ 202 (229)
+ |++|-+-|+.+++..
T Consensus 281 ~~a~~gqms~dgf~ryl~gd 300 (1189)
T KOG1265|consen 281 DNAEKGQMSTDGFVRYLMGD 300 (1189)
T ss_pred hhhhccccchhhhHHHhhCC
Confidence 5 889999999998864
No 123
>KOG3866|consensus
Probab=87.54 E-value=3.2 Score=33.74 Aligned_cols=84 Identities=20% Similarity=0.224 Sum_probs=55.4
Q ss_pred ChhHHHHHHhccCccCCCCCCHHHHHHHHhhhcCCCcHHHHHHHHHHHHccCCCCceeHHHHHHHHHhhccC-----Ch-
Q psy8447 53 PPSNVTERYKGFSPFSFQGLDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRG-----TN- 126 (229)
Q Consensus 53 ~~~~~~~l~~~f~~~d~~~i~~~ef~~~l~~~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~-----~~- 126 (229)
+..+++.+|+.-+..+++..++. ..|...|.|++|.++=.|+-.++..-... ..
T Consensus 225 SkdQLkEVWEE~DgLdpn~fdPK--------------------TFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNee 284 (442)
T KOG3866|consen 225 SKDQLKEVWEESDGLDPNQFDPK--------------------TFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEE 284 (442)
T ss_pred cHHHHHHHHHHhcCCCcccCCcc--------------------hheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcc
Confidence 44667777777666666543322 34666778888888888877777663321 11
Q ss_pred -------HHHH---HHHHHHhcCCCCCcccHHHHHHHHHH
Q psy8447 127 -------EELI---KFTFLIYDLNNDGFITREEMFQLLRN 156 (229)
Q Consensus 127 -------~~~~---~~~F~~~D~~~~G~I~~~e~~~~l~~ 156 (229)
++++ ..+.+..|+|.+..||.+||.+.-..
T Consensus 285 DDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 285 DDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhh
Confidence 1222 24688899999999999999877654
No 124
>KOG0035|consensus
Probab=87.36 E-value=1.5 Score=40.75 Aligned_cols=71 Identities=14% Similarity=0.098 Sum_probs=54.9
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcC
Q psy8447 128 ELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDE 202 (229)
Q Consensus 128 ~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~ 202 (229)
.+++..|+.+|....|.++.+++...+..+|.+... ++........++...|.+.-|++++.+|...|.+.
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~----ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~ 817 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMSLGYNTEE----EEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLERE 817 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccch----hHHHHHHHHHHHhccCcccccceeHHHHHhHhhhh
Confidence 578899999999999999999999999887654322 22333335557777777777999999999988644
No 125
>KOG1955|consensus
Probab=87.32 E-value=1.2 Score=38.39 Aligned_cols=61 Identities=18% Similarity=0.349 Sum_probs=48.6
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHh
Q psy8447 129 LIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVT 200 (229)
Q Consensus 129 ~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~ 200 (229)
-...-|+.+-.|-.|+|+..--++++.+- +++ +++ +.+|++.-|.+.||.+++.||+.++.
T Consensus 232 YYvnQFrtvQpDp~gfisGsaAknFFtKS--klp--------i~E-LshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 232 YYVNQFRTVQPDPHGFISGSAAKNFFTKS--KLP--------IEE-LSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHhhhhcccCCcccccccHHHHhhhhhc--cCc--------hHH-HHHHHhhcccCccccccHHHHHhhHh
Confidence 34567888899999999999888888653 222 222 78899999999999999999999874
No 126
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=87.28 E-value=2.1 Score=30.28 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=15.4
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHH
Q psy8447 130 IKFTFLIYDLNNDGFITREEMFQLLR 155 (229)
Q Consensus 130 ~~~~F~~~D~~~~G~I~~~e~~~~l~ 155 (229)
+.++...||++++|.|+.-.++..+.
T Consensus 99 ln~Ll~vyD~~rtG~I~vls~KvaL~ 124 (127)
T PF09068_consen 99 LNWLLNVYDSQRTGKIRVLSFKVALI 124 (127)
T ss_dssp HHHHHHHH-TT--SEEEHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeeehhHHHHHHH
Confidence 45677777777777777777666553
No 127
>KOG2557|consensus
Probab=86.42 E-value=4.1 Score=33.98 Aligned_cols=108 Identities=20% Similarity=0.346 Sum_probs=71.3
Q ss_pred CCceeHHHHHHHHHhhccCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHH----
Q psy8447 106 DGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRK---- 181 (229)
Q Consensus 106 ~g~I~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 181 (229)
+..++++.+.........+..++.++.++...|.+++|..+.....+++..++...-..+.+. .++........
T Consensus 72 ~~~~~l~k~~~~~~~~~~gt~dq~a~mL~~~~~~sgn~~~~~~q~eQ~~~~vlks~~~~ess~--~es~~~~~~d~af~~ 149 (427)
T KOG2557|consen 72 DDKMTLEKLVIAKATYEKGTDDQIAEMLYQTLDVNGNGVLSRSQLEQFLVVVLKSVFSTESSD--AESSDYKKMDDAFLN 149 (427)
T ss_pred CccchHHHHhhHHhhhccCcccHHHHHHHHHHhhccccccchhHHHHHHHHHhhheeeecccc--hhhhhhhhhhccccc
Confidence 346888888888888888888888999999999999999999999999887653221111111 11111111111
Q ss_pred ------cCCCCCCcccHHHHHHHHhcChHHHH-HhcccCCC
Q psy8447 182 ------MDYDKDGKISFQDFQQSVTDEPLLLE-AFGQCLPS 215 (229)
Q Consensus 182 ------~d~~~dg~Is~~ef~~~~~~~~~~~~-~~~~~~~~ 215 (229)
-+.+.-+..+++.|+.++...|-+.+ +|++.+++
T Consensus 150 ~~~~~ke~e~t~p~~~le~~~s~~p~f~~i~r~~fs~L~~~ 190 (427)
T KOG2557|consen 150 AATFSKEDEGTEPGMSLEDFRSWCPFFPTIRKFLFSLLMPP 190 (427)
T ss_pred hhhhccccccCCCchhHHHHhhhchHHHHHHHHHHHHhccc
Confidence 12233355789999999888887666 44444444
No 128
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=86.38 E-value=0.52 Score=33.76 Aligned_cols=37 Identities=19% Similarity=0.327 Sum_probs=22.7
Q ss_pred CCCceeHHHHHHHHHhhcc-CChHHHHHHHHHHhcCCC
Q psy8447 105 CDGVIHLDEWVLGLSCFLR-GTNEELIKFTFLIYDLNN 141 (229)
Q Consensus 105 ~~g~I~~~ef~~~~~~~~~-~~~~~~~~~~F~~~D~~~ 141 (229)
..+.|+|+-|..++..... +.+++..+.+|..|-...
T Consensus 45 ~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~~ 82 (138)
T PF14513_consen 45 PEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKKP 82 (138)
T ss_dssp ETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS----
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 4568888888888888764 466777788888875554
No 129
>KOG1029|consensus
Probab=85.41 E-value=1.3 Score=40.39 Aligned_cols=61 Identities=16% Similarity=0.313 Sum_probs=50.9
Q ss_pred HHHHHHHHccCCCCceeHHHHHHHHHhhccCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q psy8447 94 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRN 156 (229)
Q Consensus 94 ~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~ 156 (229)
-..+|...|+..+|.++-..=..++.. .+.+...+..++.+-|.|+||.++.+||.-.+.-
T Consensus 197 Y~QlFNa~DktrsG~Lsg~qaR~aL~q--S~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 197 YRQLFNALDKTRSGYLSGQQARSALGQ--SGLPQNQLAHIWTLSDVDGDGKLSADEFILAMHL 257 (1118)
T ss_pred HHHHhhhcccccccccccHHHHHHHHh--cCCchhhHhhheeeeccCCCCcccHHHHHHHHHH
Confidence 367899999999999998877766654 3577778889999999999999999999876643
No 130
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=82.91 E-value=1.9 Score=26.95 Aligned_cols=50 Identities=20% Similarity=0.135 Sum_probs=34.1
Q ss_pred CceeHHHHHHHHHhhccCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhh
Q psy8447 107 GVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLI 159 (229)
Q Consensus 107 g~I~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~ 159 (229)
-.++|.-+...+.... +...+..+...|+.=..+.|+++||.+.++.+.+
T Consensus 7 p~~~F~~L~~~l~~~l---~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVG 56 (70)
T PF12174_consen 7 PWMPFPMLFSALSKHL---PPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVG 56 (70)
T ss_pred CcccHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 3566666666666554 4444555555555557899999999999998754
No 131
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=82.18 E-value=6.7 Score=28.68 Aligned_cols=64 Identities=16% Similarity=0.269 Sum_probs=41.0
Q ss_pred HHHHHHh---cCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHh
Q psy8447 131 KFTFLIY---DLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVT 200 (229)
Q Consensus 131 ~~~F~~~---D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~ 200 (229)
+.+|..| -..+...++-.-|..+++..+.- +..++.. .+..+|..+-..+...|+|++|+.+|.
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~--d~k~t~t----dvDiiF~Kvk~k~~~~I~f~~F~~aL~ 68 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGII--DKKLTST----DVDIIFSKVKAKGARKITFEQFLEALA 68 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS----SSS-HH----HHHHHHHHHT-SS-SEEEHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCC--CCCCchH----HHHHHHHHhhcCCCcccCHHHHHHHHH
Confidence 3455555 35556788899999999886432 2223333 267788886555566799999999885
No 132
>KOG0998|consensus
Probab=81.94 E-value=0.96 Score=42.41 Aligned_cols=178 Identities=16% Similarity=0.133 Sum_probs=108.6
Q ss_pred CcCcHHHHHHHHHHHHHHhhcCCCCCCCCCCchhhhHhhcCCChhHHHHHHhccCccCCCCCCHHHHHHHHhhhcCCCc-
Q psy8447 11 PLSFRQEVETLCKIFKKLLNSSSNAGVPISTSTPVVVQVSGLPPSNVTERYKGFSPFSFQGLDRVVFRELLHNTFDLVT- 89 (229)
Q Consensus 11 ~~~~~~~i~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~f~~~d~~~i~~~ef~~~l~~~~~~~~- 89 (229)
..++.++...+-.+|+.+++.. +...-....-+....+++..-+.++|..-+....+.+++.+|.-.++.....+.
T Consensus 121 p~~~~qe~aky~q~f~s~~p~~---g~~sg~~~~pil~~s~Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l~~ 197 (847)
T KOG0998|consen 121 PAITPQEQAKYDQIFRSLSPSN---GLLSGDKAKPILLNSKLPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLLNG 197 (847)
T ss_pred CCCCHHHHHHHHHHHhccCCCC---CccccchhhhhhhcCCCChhhhccccccccccccCCCChhhhhhhhhHHHHHhhc
Confidence 4577888888888888888752 223334455555666677777777777777666666777777655543211000
Q ss_pred -----H----H--------------------------------HHHHHHHHHHccCCCCceeHHHHHHHHHhhcc-----
Q psy8447 90 -----E----E--------------------------------ILMERIFCAFDRLCDGVIHLDEWVLGLSCFLR----- 123 (229)
Q Consensus 90 -----~----~--------------------------------~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~----- 123 (229)
+ . .....+...-+.+.++.++-.++.........
T Consensus 198 ~~~p~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~~v 277 (847)
T KOG0998|consen 198 NSEPVPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSPKV 277 (847)
T ss_pred ccCCCCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccCccc
Confidence 0 0 00111112222233444444443333332222
Q ss_pred -CChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcC
Q psy8447 124 -GTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDE 202 (229)
Q Consensus 124 -~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~ 202 (229)
.........+|...|.+.+|.|+..+....+...+. + .+.+.+++...|..+.|.+++.+|.-.+...
T Consensus 278 sp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~gl--~---------~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~ 346 (847)
T KOG0998|consen 278 SPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFGL--S---------KPRLAHVWLLADTQNTGTLSKDEFALAMHLL 346 (847)
T ss_pred ChHHHHHHHHHHHhccccCCCcccccccccccccCCC--C---------hhhhhhhhhhcchhccCcccccccchhhhhh
Confidence 122345566899999999999999999998876332 1 1237889999999999999999888766543
No 133
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=81.90 E-value=3.8 Score=24.02 Aligned_cols=46 Identities=20% Similarity=0.225 Sum_probs=37.4
Q ss_pred CcCcHHHHHHHHHHHHHHhhcCCCCCCCCCCchhhhHhhcCCChhHHHHHHhc
Q psy8447 11 PLSFRQEVETLCKIFKKLLNSSSNAGVPISTSTPVVVQVSGLPPSNVTERYKG 63 (229)
Q Consensus 11 ~~~~~~~i~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 63 (229)
+.++.+.+..|...|.. .+. |+..+...++..++++..+|..|+..
T Consensus 5 ~~~~~~~~~~Le~~f~~-----~~~--P~~~~~~~la~~~~l~~~qV~~WF~n 50 (59)
T cd00086 5 TRFTPEQLEELEKEFEK-----NPY--PSREEREELAKELGLTERQVKIWFQN 50 (59)
T ss_pred CcCCHHHHHHHHHHHHh-----CCC--CCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 56788999999999987 222 66778889999999999999988754
No 134
>KOG4301|consensus
Probab=81.71 E-value=13 Score=30.76 Aligned_cols=153 Identities=13% Similarity=0.209 Sum_probs=93.9
Q ss_pred hHhhcCCChhHHHHHHhccCccCCCC------CCHHHHHHHHhhhcC----CC------cHH----HHHHHHHHHHccCC
Q psy8447 46 VVQVSGLPPSNVTERYKGFSPFSFQG------LDRVVFRELLHNTFD----LV------TEE----ILMERIFCAFDRLC 105 (229)
Q Consensus 46 ~~~~~~l~~~~~~~l~~~f~~~d~~~------i~~~ef~~~l~~~~~----~~------~~~----~~~~~lf~~~d~~~ 105 (229)
+.++.++--.++..+.++|....-+. |+...+..++...+. .+ ..+ -.+.-+...+|..+
T Consensus 44 iqkk~~~hlvdiwnmieafren~ln~l~~~tei~~srlea~lstif~qlnkrL~ss~~id~e~sislllaflLaA~ds~~ 123 (434)
T KOG4301|consen 44 IQKKCNLHLVDIWNMIEAFRENGLNNLDPNTEINVSRLEAVLSTIFYQLNKRLPSSHQIDVEQSISLLLAFLLAAEDSEG 123 (434)
T ss_pred eeccCCchhHHHHHHHHHHHhccccCCCCcchhhhhHHHHHHHHHHHhhhccCcccccccHHHHHHHHHHHHHhhcCccC
Confidence 33445555566666666666543332 444444444443311 11 111 11233456789999
Q ss_pred CCceeHHHHHHHHHhhccCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCC--CCCChHHHHHHHHHHHHHcC
Q psy8447 106 DGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQ--DEDPDEGVRDLVELALRKMD 183 (229)
Q Consensus 106 ~g~I~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d 183 (229)
.|.++---....+..++.+...++++.+|.... |.+|.+..-.+.++++.+..-... +.-+..--+..++..|
T Consensus 124 ~g~~~vfavkialatlc~gk~~dklryIfs~is-ds~gim~~i~~~~fl~evlslpT~v~e~psfg~te~~a~~cf---- 198 (434)
T KOG4301|consen 124 QGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHEVLSLPTAVFEGPSFGYTELSARLCF---- 198 (434)
T ss_pred CCCceeecchhhhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHcCCchhhcCCCcchHHHHHHHHH----
Confidence 999999989999999999988999999999984 667888888888888876531110 1111111122233333
Q ss_pred CCCCCcccHHHHHHHHhcChH
Q psy8447 184 YDKDGKISFQDFQQSVTDEPL 204 (229)
Q Consensus 184 ~~~dg~Is~~ef~~~~~~~~~ 204 (229)
-.+-+++++.|+..+...|.
T Consensus 199 -~qqrKv~Ln~fldtl~sdp~ 218 (434)
T KOG4301|consen 199 -LQQRKVELNQFLDTLMSDPP 218 (434)
T ss_pred -HHHHHHHHHHHHHHHhcCCC
Confidence 23456899999998888764
No 135
>KOG0042|consensus
Probab=81.18 E-value=1.8 Score=38.18 Aligned_cols=64 Identities=14% Similarity=0.329 Sum_probs=50.7
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhc
Q psy8447 129 LIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTD 201 (229)
Q Consensus 129 ~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~ 201 (229)
..+.-|..+|.|+.|+++..+++++++..+.+. +++ .+..++++.|.+-.|.++..||.+++..
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~-----d~~----~~~~~l~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSENVGW-----DED----RLHEELQEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCC-----CHH----HHHHHHHHHHHhhcceeeHHHHHHHHHH
Confidence 345679999999999999999999998765222 222 3667788888888999999999998763
No 136
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=81.02 E-value=2.3 Score=24.99 Aligned_cols=45 Identities=13% Similarity=0.234 Sum_probs=36.8
Q ss_pred CcCcHHHHHHHHHHHHHHhhcCCCCCCCCCCchhhhHhhcCCChhHHHHHHh
Q psy8447 11 PLSFRQEVETLCKIFKKLLNSSSNAGVPISTSTPVVVQVSGLPPSNVTERYK 62 (229)
Q Consensus 11 ~~~~~~~i~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 62 (229)
+.||.+++..|...|.. . . . |...+...++..++++...|..|+.
T Consensus 5 ~~~t~~q~~~L~~~f~~-~--~--~--p~~~~~~~la~~l~l~~~~V~~WF~ 49 (57)
T PF00046_consen 5 TRFTKEQLKVLEEYFQE-N--P--Y--PSKEEREELAKELGLTERQVKNWFQ 49 (57)
T ss_dssp SSSSHHHHHHHHHHHHH-S--S--S--CHHHHHHHHHHHHTSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-h--c--c--ccccccccccccccccccccccCHH
Confidence 67899999999999994 1 1 2 5567788999999999999988875
No 137
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=80.19 E-value=2.4 Score=26.47 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q psy8447 126 NEELIKFTFLIYDLNNDGFITREEMFQLLR 155 (229)
Q Consensus 126 ~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~ 155 (229)
+.+.+..+|+.. .++.++||.+|+++.|.
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~ 32 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSLT 32 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS-
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHcC
Confidence 346788999999 78889999999998864
No 138
>PLN02952 phosphoinositide phospholipase C
Probab=78.51 E-value=27 Score=31.57 Aligned_cols=85 Identities=11% Similarity=0.008 Sum_probs=56.1
Q ss_pred CCCCHHHHHHHHhhhcC-CCcHHHHHHHHHHHHccCCCCceeHHHHHHHHHhhccC--ChHHHHHHHHHHh----c---C
Q psy8447 70 QGLDRVVFRELLHNTFD-LVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRG--TNEELIKFTFLIY----D---L 139 (229)
Q Consensus 70 ~~i~~~ef~~~l~~~~~-~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~--~~~~~~~~~F~~~----D---~ 139 (229)
+.++..+|..+.+.+.. ...+...+..+|..+..++ +.++.++|..++...... .+.+.+..++..+ . .
T Consensus 15 g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~~ 93 (599)
T PLN02952 15 GSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVTR 93 (599)
T ss_pred CCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccccc
Confidence 34888999888777642 2223333788998886544 689999999999887653 3444555555433 1 1
Q ss_pred CCCCcccHHHHHHHHH
Q psy8447 140 NNDGFITREEMFQLLR 155 (229)
Q Consensus 140 ~~~G~I~~~e~~~~l~ 155 (229)
.+.+.++.+.|..+|.
T Consensus 94 ~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 94 YTRHGLNLDDFFHFLL 109 (599)
T ss_pred ccccCcCHHHHHHHHc
Confidence 2335688999988885
No 139
>KOG1264|consensus
Probab=77.83 E-value=28 Score=32.55 Aligned_cols=149 Identities=9% Similarity=0.129 Sum_probs=78.7
Q ss_pred CChhHHHHHH-hccCccCCC---CCCHHHHHHHHhhhcCCCcHHHHHHHHHHHHccCCCCceeHHHHHHHHHhhccCChH
Q psy8447 52 LPPSNVTERY-KGFSPFSFQ---GLDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNE 127 (229)
Q Consensus 52 l~~~~~~~l~-~~f~~~d~~---~i~~~ef~~~l~~~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~~~~ 127 (229)
+++.++.+|. +.+...+.. .|+..++..++.......+...+...-|..- ....+-++|++|-.+...+.-....
T Consensus 137 ~~p~qI~~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted-~~~k~dlsf~~f~~ly~~lmfs~~~ 215 (1267)
T KOG1264|consen 137 PTPLQIERWLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTED-GARKDDLSFEQFHLLYKKLMFSQQK 215 (1267)
T ss_pred CChHHHHHHHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhHh-hhccccccHHHHHHHHHHHhhccch
Confidence 4556666663 444444533 2888999999888765555554443333332 3345679999999988876543222
Q ss_pred HHHH---HHHHH--hcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCC-CCCCcccHHHHHHHHhc
Q psy8447 128 ELIK---FTFLI--YDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDY-DKDGKISFQDFQQSVTD 201 (229)
Q Consensus 128 ~~~~---~~F~~--~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~dg~Is~~ef~~~~~~ 201 (229)
..+. ..|-. =+...--.++..||.++|..--....-.+.+ .++.....+++..-. -..-.+++.||+.++-.
T Consensus 216 a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~--av~~~~r~F~~D~~re~~EPyl~v~EFv~fLFS 293 (1267)
T KOG1264|consen 216 AILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRN--AVREFMRKFIDDTMRETAEPYLFVDEFVTFLFS 293 (1267)
T ss_pred hhhhcccchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHH--HHHHHHHHHHhhhhhhccCcceeHHHHHHHHhh
Confidence 2111 11111 1111224688999999886432111100101 222222222222111 12346899999998865
Q ss_pred Ch
Q psy8447 202 EP 203 (229)
Q Consensus 202 ~~ 203 (229)
.+
T Consensus 294 re 295 (1267)
T KOG1264|consen 294 RE 295 (1267)
T ss_pred cc
Confidence 54
No 140
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=77.70 E-value=4 Score=18.99 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=11.3
Q ss_pred cCCCCCcccHHHHHHHH
Q psy8447 138 DLNNDGFITREEMFQLL 154 (229)
Q Consensus 138 D~~~~G~I~~~e~~~~l 154 (229)
|.|++|.|+.-++.-+-
T Consensus 1 DvN~DG~vna~D~~~lk 17 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALLK 17 (21)
T ss_dssp -TTSSSSSSHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHH
Confidence 56788888887765443
No 141
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=76.87 E-value=12 Score=26.77 Aligned_cols=65 Identities=14% Similarity=0.162 Sum_probs=35.3
Q ss_pred CCCCCchhhhHhhcCCChhHHHHHHhccCccCCC------C-CCHHHHHHHHhhhcCCCcHHHHHHHHHHHH
Q psy8447 37 VPISTSTPVVVQVSGLPPSNVTERYKGFSPFSFQ------G-LDRVVFRELLHNTFDLVTEEILMERIFCAF 101 (229)
Q Consensus 37 ~~~~~~~~~~~~~~~l~~~~~~~l~~~f~~~d~~------~-i~~~ef~~~l~~~~~~~~~~~~~~~lf~~~ 101 (229)
+.++.++.++.+-...+...++.+++.|.....- . |+.+.|+.++....-.-.++++++.+|..|
T Consensus 7 ~lsp~eF~qLq~y~eys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF 78 (138)
T PF14513_consen 7 SLSPEEFAQLQKYSEYSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSF 78 (138)
T ss_dssp -S-HHHHHHHHHHHHH----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3556666677666666777777777777654321 1 888888888877655446666666666553
No 142
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=76.22 E-value=3.5 Score=27.58 Aligned_cols=56 Identities=21% Similarity=0.166 Sum_probs=31.0
Q ss_pred ccCccCCCC-CCHHHHHHHHhhhcCCCcHHHHHHHHHHHHccC---CCCceeHHHHHHHHHhhc
Q psy8447 63 GFSPFSFQG-LDRVVFRELLHNTFDLVTEEILMERIFCAFDRL---CDGVIHLDEWVLGLSCFL 122 (229)
Q Consensus 63 ~f~~~d~~~-i~~~ef~~~l~~~~~~~~~~~~~~~lf~~~d~~---~~g~I~~~ef~~~~~~~~ 122 (229)
.|+....++ +....|.+++.. ...++++..+|..+-+. ..+.|+.+|+..+|..+.
T Consensus 35 RFd~La~dG~L~rs~Fg~CIGM----~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qis 94 (100)
T PF08414_consen 35 RFDKLAKDGLLPRSDFGECIGM----KDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQIS 94 (100)
T ss_dssp HHHHH-BTTBEEGGGHHHHHT------S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH
T ss_pred HHHHhCcCCcccHHHHHHhcCC----cccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhh
Confidence 333333344 777777777663 34566677777666432 235677777777776654
No 143
>KOG1707|consensus
Probab=75.55 E-value=45 Score=29.96 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=29.5
Q ss_pred HHHHHHHHHcCCCCCCcccHHHHHHHHhcChHH
Q psy8447 173 DLVELALRKMDYDKDGKISFQDFQQSVTDEPLL 205 (229)
Q Consensus 173 ~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~~~~ 205 (229)
+.+..+|..+|.++||.++=+|+..++..-|..
T Consensus 315 ~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~ 347 (625)
T KOG1707|consen 315 RFLVDVFEKFDRDNDGALSPEELKDLFSTAPGS 347 (625)
T ss_pred HHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCC
Confidence 468889999999999999999999998887765
No 144
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=74.08 E-value=26 Score=24.69 Aligned_cols=73 Identities=22% Similarity=0.231 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCCC--CCcccHHHHHHHHHHHhh----cCCCCCCC-----hHHHHHHHHHHHHHcCCCCCCcccHHHHH
Q psy8447 128 ELIKFTFLIYDLNN--DGFITREEMFQLLRNSLI----SHPQDEDP-----DEGVRDLVELALRKMDYDKDGKISFQDFQ 196 (229)
Q Consensus 128 ~~~~~~F~~~D~~~--~G~I~~~e~~~~l~~~~~----~~~~~~~~-----~~~~~~~~~~~~~~~d~~~dg~Is~~ef~ 196 (229)
..+..+|+....+. +..|+..++..++..++. +.+..... +...+=.+.-++..+|.++.|.|+.-.|+
T Consensus 41 ~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~K 120 (127)
T PF09068_consen 41 SNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFK 120 (127)
T ss_dssp HHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHH
T ss_pred HHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHH
Confidence 34555666655553 466888888888887762 23332211 23444457778999999999999999998
Q ss_pred HHHh
Q psy8447 197 QSVT 200 (229)
Q Consensus 197 ~~~~ 200 (229)
..+.
T Consensus 121 vaL~ 124 (127)
T PF09068_consen 121 VALI 124 (127)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 145
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=73.87 E-value=6.3 Score=22.83 Aligned_cols=46 Identities=20% Similarity=0.195 Sum_probs=36.7
Q ss_pred CcCcHHHHHHHHHHHHHHhhcCCCCCCCCCCchhhhHhhcCCChhHHHHHHhc
Q psy8447 11 PLSFRQEVETLCKIFKKLLNSSSNAGVPISTSTPVVVQVSGLPPSNVTERYKG 63 (229)
Q Consensus 11 ~~~~~~~i~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 63 (229)
+.++++++..|...|..-. .|...+...++..++++..+|..|+..
T Consensus 5 ~~~~~~~~~~L~~~f~~~~-------~P~~~~~~~la~~~~l~~~qV~~WF~n 50 (56)
T smart00389 5 TSFTPEQLEELEKEFQKNP-------YPSREEREELAAKLGLSERQVKVWFQN 50 (56)
T ss_pred CcCCHHHHHHHHHHHHhCC-------CCCHHHHHHHHHHHCcCHHHHHHhHHH
Confidence 4588999999988887433 266778889999999999999888754
No 146
>KOG4004|consensus
Probab=71.69 E-value=1.3 Score=33.49 Aligned_cols=58 Identities=17% Similarity=0.301 Sum_probs=42.1
Q ss_pred HHHHHhcCC-CCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHh
Q psy8447 132 FTFLIYDLN-NDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVT 200 (229)
Q Consensus 132 ~~F~~~D~~-~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~ 200 (229)
+-|-..|.. .+|++|-.|+.-+-..+. ..+--+..+|...|.|+||.|+.+||..++-
T Consensus 191 wqf~qld~~p~d~~~sh~el~pl~ap~i-----------pme~c~~~f~e~cd~~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 191 WQFGQLDQHPIDGYLSHTELAPLRAPLI-----------PMEHCTTRFFETCDLDNDKYIALDEWAGCFG 249 (259)
T ss_pred eeeccccCCCccccccccccccccCCcc-----------cHHhhchhhhhcccCCCCCceeHHHhhcccC
Confidence 446666766 699999999865533221 1122367799999999999999999988764
No 147
>PLN02223 phosphoinositide phospholipase C
Probab=68.65 E-value=31 Score=30.67 Aligned_cols=76 Identities=8% Similarity=-0.015 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcC----CCCCCcccHHHHHHHHhc
Q psy8447 126 NEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMD----YDKDGKISFQDFQQSVTD 201 (229)
Q Consensus 126 ~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----~~~dg~Is~~ef~~~~~~ 201 (229)
+.+.++.+|..| .+++|..+.+.+.+++.-+...-.....+.+..+.+++.++...- ....+.++.+.|..++..
T Consensus 14 ~p~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 14 QPDLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred CcHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 456788888888 367788888888888843322222233345555556666554432 112356999999999976
Q ss_pred C
Q psy8447 202 E 202 (229)
Q Consensus 202 ~ 202 (229)
.
T Consensus 93 ~ 93 (537)
T PLN02223 93 T 93 (537)
T ss_pred c
Confidence 4
No 148
>KOG0488|consensus
Probab=67.19 E-value=8 Score=31.83 Aligned_cols=47 Identities=15% Similarity=0.074 Sum_probs=38.4
Q ss_pred cCcCcHHHHHHHHHHHHHHhhcCCCCCCCCCCchhhhHhhcCCChhHHHHHHhc
Q psy8447 10 LPLSFRQEVETLCKIFKKLLNSSSNAGVPISTSTPVVVQVSGLPPSNVTERYKG 63 (229)
Q Consensus 10 ~~~~~~~~i~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 63 (229)
=|.||+.++..|.++|....- ....+=..++..++|+..+|+.||..
T Consensus 176 RTaFT~~Ql~~LEkrF~~QKY-------LS~~DR~~LA~~LgLTdaQVKtWfQN 222 (309)
T KOG0488|consen 176 RTAFSDHQLFELEKRFEKQKY-------LSVADRIELAASLGLTDAQVKTWFQN 222 (309)
T ss_pred hhhhhHHHHHHHHHHHHHhhc-------ccHHHHHHHHHHcCCchhhHHHHHhh
Confidence 478999999999999997654 33444578899999999999999855
No 149
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=65.83 E-value=5.5 Score=23.87 Aligned_cols=50 Identities=8% Similarity=-0.092 Sum_probs=35.4
Q ss_pred cCcCcHHHHHHHHHHHHHHhhcCCCCCCCCCCchhhhHhhcCCChhHHHHHHh
Q psy8447 10 LPLSFRQEVETLCKIFKKLLNSSSNAGVPISTSTPVVVQVSGLPPSNVTERYK 62 (229)
Q Consensus 10 ~~~~~~~~i~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 62 (229)
=|.||.+++..|...|....-.-. +|.......+...+++++..++-|+.
T Consensus 5 RT~Ft~~Q~~~Le~~fe~~~y~~~---~~~~~~r~~la~~lgl~~~vvKVWfq 54 (58)
T TIGR01565 5 RTKFTAEQKEKMRDFAEKLGWKLK---DKRREEVREFCEEIGVTRKVFKVWMH 54 (58)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHHhCCCHHHeeeecc
Confidence 378999999999988886653221 14445677888888888877766553
No 150
>KOG1265|consensus
Probab=65.56 E-value=1.3e+02 Score=28.78 Aligned_cols=80 Identities=18% Similarity=0.158 Sum_probs=61.4
Q ss_pred CCHHHHHHHHhhhcCCCcHHHHHHHHHHHHccCCCCceeHHHHHHHHHhhcc----------CChHHHHHHHHHHhcCCC
Q psy8447 72 LDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLR----------GTNEELIKFTFLIYDLNN 141 (229)
Q Consensus 72 i~~~ef~~~l~~~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~----------~~~~~~~~~~F~~~D~~~ 141 (229)
.+...|..++..+++ ...++.||..+..++.-.++.+++..++..-.+ .....+++.+.+.|..++
T Consensus 205 f~~e~f~~~l~klcp----R~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~ 280 (1189)
T KOG1265|consen 205 FTLEKFYRLLNKLCP----RPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNS 280 (1189)
T ss_pred ccHHHHHHHHHhcCC----chhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCch
Confidence 555666777776543 223788999999888889999999999987544 244578888999987774
Q ss_pred ----CCcccHHHHHHHHH
Q psy8447 142 ----DGFITREEMFQLLR 155 (229)
Q Consensus 142 ----~G~I~~~e~~~~l~ 155 (229)
.|.++.+-|..++.
T Consensus 281 ~~a~~gqms~dgf~ryl~ 298 (1189)
T KOG1265|consen 281 DNAEKGQMSTDGFVRYLM 298 (1189)
T ss_pred hhhhccccchhhhHHHhh
Confidence 78999999988874
No 151
>PLN02230 phosphoinositide phospholipase C 4
Probab=63.64 E-value=48 Score=30.04 Aligned_cols=74 Identities=15% Similarity=0.181 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcC---CCCCCcccHHHHHHHHhcC
Q psy8447 126 NEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMD---YDKDGKISFQDFQQSVTDE 202 (229)
Q Consensus 126 ~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~~dg~Is~~ef~~~~~~~ 202 (229)
+..+++.+|..|-.++ +.++.++|..+|...-... ...+.+..+.++..+..... .-..+.++.+.|..++...
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s~ 103 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGE--GETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFST 103 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCc--ccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcCc
Confidence 4567888999985443 7999999999998753211 12233344444444433322 1234569999999988763
No 152
>KOG0042|consensus
Probab=63.07 E-value=26 Score=31.33 Aligned_cols=74 Identities=16% Similarity=0.148 Sum_probs=41.8
Q ss_pred cCCChhHHHHHHhccCccCCCC---CCHHHHHHHHhhhcCCCcHHHHHHHHHHHHccCCCCceeHHHHHHHHHhhccC
Q psy8447 50 SGLPPSNVTERYKGFSPFSFQG---LDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRG 124 (229)
Q Consensus 50 ~~l~~~~~~~l~~~f~~~d~~~---i~~~ef~~~l~~~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~ 124 (229)
..++++++......|...|.+. +...+....+...+. ..+++.+.++.+..|.+.+|.+...||..+.+.+..+
T Consensus 585 i~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~-~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~g 661 (680)
T KOG0042|consen 585 IKLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENV-GWDEDRLHEELQEADENLNGFVELREFLQLMSAIKNG 661 (680)
T ss_pred cccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhcC
Confidence 4456666666666666665532 445555555555442 2233335555566666666666666666666655443
No 153
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=61.29 E-value=23 Score=24.09 Aligned_cols=67 Identities=15% Similarity=0.203 Sum_probs=37.1
Q ss_pred HhcCCCCCcccHHHHHHHHHHHhhcCCCCCCCh-HHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcC
Q psy8447 136 IYDLNNDGFITREEMFQLLRNSLISHPQDEDPD-EGVRDLVELALRKMDYDKDGKISFQDFQQSVTDE 202 (229)
Q Consensus 136 ~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~ 202 (229)
+||+..+-+||.+++.++++.--.-...+..+. +.-..++-+++-+....+...++-.=..++++..
T Consensus 11 LYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~~L~qlIr~y 78 (107)
T TIGR01848 11 LYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTDFLTQIIRFY 78 (107)
T ss_pred ccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHh
Confidence 578888888888888888865210000111111 1222344555555545566667776666666644
No 154
>KOG0493|consensus
Probab=60.38 E-value=9.6 Score=30.19 Aligned_cols=47 Identities=13% Similarity=0.090 Sum_probs=37.0
Q ss_pred cCcCcHHHHHHHHHHHHHHhhcCCCCCCCCCCchhhhHhhcCCChhHHHHHHhc
Q psy8447 10 LPLSFRQEVETLCKIFKKLLNSSSNAGVPISTSTPVVVQVSGLPPSNVTERYKG 63 (229)
Q Consensus 10 ~~~~~~~~i~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 63 (229)
-|.||.++++.|+..|+..-- .+...-+++.+.++|++.+|+-|+..
T Consensus 250 RTAFtaeQL~RLK~EF~enRY-------lTEqRRQ~La~ELgLNEsQIKIWFQN 296 (342)
T KOG0493|consen 250 RTAFTAEQLQRLKAEFQENRY-------LTEQRRQELAQELGLNESQIKIWFQN 296 (342)
T ss_pred cccccHHHHHHHHHHHhhhhh-------HHHHHHHHHHHHhCcCHHHhhHHhhh
Confidence 578999999999999985332 33444578899999999999988754
No 155
>PLN02228 Phosphoinositide phospholipase C
Probab=56.39 E-value=60 Score=29.25 Aligned_cols=65 Identities=14% Similarity=0.226 Sum_probs=36.4
Q ss_pred CChhHHHHHHhccCccCCCCCCHHHHHHHHhhhcCC-CcHHHHHHHHHHHHccC----CCCceeHHHHHHHH
Q psy8447 52 LPPSNVTERYKGFSPFSFQGLDRVVFRELLHNTFDL-VTEEILMERIFCAFDRL----CDGVIHLDEWVLGL 118 (229)
Q Consensus 52 l~~~~~~~l~~~f~~~d~~~i~~~ef~~~l~~~~~~-~~~~~~~~~lf~~~d~~----~~g~I~~~ef~~~~ 118 (229)
.++.++..++..+... +.++.++|..++...-.. ....+.+..++..+... ..|.++.+.|..++
T Consensus 21 ~~~~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl 90 (567)
T PLN02228 21 EPPVSIKRLFEAYSRN--GKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYL 90 (567)
T ss_pred CCcHHHHHHHHHhcCC--CccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHh
Confidence 3667777777666532 247777777777665332 22233356666666432 23456666655544
No 156
>PLN02222 phosphoinositide phospholipase C 2
Probab=54.59 E-value=55 Score=29.59 Aligned_cols=68 Identities=13% Similarity=0.111 Sum_probs=49.0
Q ss_pred CCChhHHHHHHhccCccCCCCCCHHHHHHHHhhhcCC-CcHHHHHHHHHHHHcc-CCCCceeHHHHHHHHHh
Q psy8447 51 GLPPSNVTERYKGFSPFSFQGLDRVVFRELLHNTFDL-VTEEILMERIFCAFDR-LCDGVIHLDEWVLGLSC 120 (229)
Q Consensus 51 ~l~~~~~~~l~~~f~~~d~~~i~~~ef~~~l~~~~~~-~~~~~~~~~lf~~~d~-~~~g~I~~~ef~~~~~~ 120 (229)
..++.++..++..+.. .+.++.++|..++...... ....+.+..|+..+.. ...+.++++.|..++..
T Consensus 21 ~~~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 21 SEAPREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CCCcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 3466789999988864 3459999999999887553 2334446777877642 23567999999998876
No 157
>KOG2243|consensus
Probab=53.74 E-value=30 Score=34.62 Aligned_cols=58 Identities=12% Similarity=0.262 Sum_probs=48.5
Q ss_pred HHHHHccCCCCceeHHHHHHHHHhhccCChHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q psy8447 97 IFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 155 (229)
Q Consensus 97 lf~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~ 155 (229)
-|+.+|+|+.|.|+..+|-.++..- +..+..++..+......|.+..+++++|...+.
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 3677899999999999999988753 345667888899999999999999999988664
No 158
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=53.58 E-value=28 Score=23.26 Aligned_cols=54 Identities=26% Similarity=0.378 Sum_probs=33.7
Q ss_pred CcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHH---HHHHHcCCCCCCcccHHHHHHHHhcChHHH
Q psy8447 143 GFITREEMFQLLRNSLISHPQDEDPDEGVRDLVE---LALRKMDYDKDGKISFQDFQQSVTDEPLLL 206 (229)
Q Consensus 143 G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~~~dg~Is~~ef~~~~~~~~~~~ 206 (229)
..++.+++..++...+. ...+++. ..++..+......++-+|+.++|.++|.++
T Consensus 34 ~~~~~~~l~~~~~~~~~----------~~~~li~~~~~~~~~l~~~~~~~ls~~e~~~~l~~~p~Li 90 (105)
T cd02977 34 EPPTKEELKELLAKLGL----------GVEDLFNTRGTPYRKLGLADKDELSDEEALELMAEHPKLI 90 (105)
T ss_pred CCCCHHHHHHHHHhcCC----------CHHHHHhcCCchHHHcCCccccCCCHHHHHHHHHhCcCee
Confidence 44577788777765531 0111121 344555443346789999999999999874
No 159
>KOG0998|consensus
Probab=53.28 E-value=4.7 Score=37.97 Aligned_cols=62 Identities=21% Similarity=0.266 Sum_probs=54.0
Q ss_pred HHHHHHHHccCCCCceeHHHHHHHHHhhccCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q psy8447 94 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNS 157 (229)
Q Consensus 94 ~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~ 157 (229)
...+|...|.+.+|.|++.++...+.. .+.....+...+...|.++.|.|++.++.-.+..+
T Consensus 285 ~~~if~q~d~~~dG~I~s~~~~~~f~~--~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~ 346 (847)
T KOG0998|consen 285 YSKIFSQVDKDNDGSISSNEARNIFLP--FGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHLL 346 (847)
T ss_pred HHHHHHhccccCCCccccccccccccc--CCCChhhhhhhhhhcchhccCcccccccchhhhhh
Confidence 345789999999999999999998887 56777889999999999999999999988877654
No 160
>KOG4004|consensus
Probab=50.94 E-value=7.3 Score=29.63 Aligned_cols=48 Identities=23% Similarity=0.228 Sum_probs=33.9
Q ss_pred CCCceeHHHHHHHHHhhccCChHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q psy8447 105 CDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLL 154 (229)
Q Consensus 105 ~~g~I~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l 154 (229)
.+|.+|-.|+..+-..+. ..+.=...+|+..|.|++|+|+..|+...+
T Consensus 201 ~d~~~sh~el~pl~ap~i--pme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 201 IDGYLSHTELAPLRAPLI--PMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred ccccccccccccccCCcc--cHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 356677666554433332 234456789999999999999999987655
No 161
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 Phycobilisomes (PBSs) are the major light-harvesting systems in cyanobacteria and red algae. PBS is a supercomplex that is composed of a core complex and multiple peripheral rod complexes. Typically, the core consists of two or five cylinders lying on the membrane with, in most cases, multiple rods radiating from the core to form a hemidiscoidal structure. The building units of the core cylinders and the peripheral rods are trimeric and hexameric discs, in which a monomer consists of a pair of related phycobiliproteins (PBPs), such as phycorerythrins, phycoerythrocyanins, phycocyanins, and allophycocyanins. The discs are connected to each other via specific linker polypeptides to form peripheral rods or core cylinders. Linker polypeptides share a conserved domain of ~180 residues, which can be present in one or multiple copies [, , , , ].; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2L8V_A 2KY4_A 3OSJ_D 2L06_A 3NPH_B 2L3W_A 3PRU_C 3OHW_A.
Probab=50.93 E-value=88 Score=22.25 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=19.2
Q ss_pred CCcccHHHHHHHHhcChHHHHHhccc
Q psy8447 187 DGKISFQDFQQSVTDEPLLLEAFGQC 212 (229)
Q Consensus 187 dg~Is~~ef~~~~~~~~~~~~~~~~~ 212 (229)
+|.||..||++.+...+.+.+.|-..
T Consensus 42 ng~IsVreFVr~La~S~~yr~~f~~~ 67 (131)
T PF00427_consen 42 NGQISVREFVRALAKSELYRKRFFEP 67 (131)
T ss_dssp TTSS-HHHHHHHHHTSHHHHHHHTTT
T ss_pred cCCCcHHHHHHHHHcCHHHHHHHccc
Confidence 68899999999998887765554443
No 162
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=50.52 E-value=15 Score=20.57 Aligned_cols=27 Identities=37% Similarity=0.618 Sum_probs=17.3
Q ss_pred CcccHHHHH----HHHhcChHHHHHhcccCC
Q psy8447 188 GKISFQDFQ----QSVTDEPLLLEAFGQCLP 214 (229)
Q Consensus 188 g~Is~~ef~----~~~~~~~~~~~~~~~~~~ 214 (229)
+.++..+.. .++..+|++++.|...+|
T Consensus 17 ~~~~~~~v~~~v~~Ll~~hpdLl~~F~~FlP 47 (47)
T PF02671_consen 17 GRISRSEVIEEVSELLRGHPDLLEEFNRFLP 47 (47)
T ss_dssp TCSCHHHHHHHHHHHTTT-HHHHHHHHHHSS
T ss_pred cCCCHHHHHHHHHHHHccCHHHHHHHHhhCc
Confidence 445555444 455688999988887765
No 163
>PLN02228 Phosphoinositide phospholipase C
Probab=50.51 E-value=83 Score=28.40 Aligned_cols=69 Identities=13% Similarity=0.209 Sum_probs=42.6
Q ss_pred ChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCC----CCCcccHHHHHHHHh
Q psy8447 125 TNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYD----KDGKISFQDFQQSVT 200 (229)
Q Consensus 125 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~----~dg~Is~~ef~~~~~ 200 (229)
.+..++..+|..|-. ++.++.++|..+|...-... ..+.+ .+..++..+... ..|.++.+.|..++.
T Consensus 21 ~~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~---~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~ 91 (567)
T PLN02228 21 EPPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGER---HAGLD----YVQDIFHSVKHHNVFHHHGLVHLNAFYRYLF 91 (567)
T ss_pred CCcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCc---cCCHH----HHHHHHHHhccchhhcccCccCHHHHHHHhc
Confidence 355677788888753 25788888888887653211 11111 245566655432 346799999999887
Q ss_pred cC
Q psy8447 201 DE 202 (229)
Q Consensus 201 ~~ 202 (229)
..
T Consensus 92 s~ 93 (567)
T PLN02228 92 SD 93 (567)
T ss_pred Cc
Confidence 54
No 164
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=48.06 E-value=79 Score=20.88 Aligned_cols=53 Identities=15% Similarity=0.152 Sum_probs=23.4
Q ss_pred HHHHHHHccCCCCceeHHHHHHHHHhhcc-CChHHHHHHHHHHhcCCCCCcccHHH
Q psy8447 95 ERIFCAFDRLCDGVIHLDEWVLGLSCFLR-GTNEELIKFTFLIYDLNNDGFITREE 149 (229)
Q Consensus 95 ~~lf~~~d~~~~g~I~~~ef~~~~~~~~~-~~~~~~~~~~F~~~D~~~~G~I~~~e 149 (229)
..+...+........++.+|...+...+. ......+..+|.+.-. ||.++..|
T Consensus 40 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA~A--DG~~~~~E 93 (104)
T cd07313 40 AELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVAYA--DGELDEYE 93 (104)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh--cCCCCHHH
Confidence 44455554444444556665555544331 1112234444444432 34455544
No 165
>PLN02222 phosphoinositide phospholipase C 2
Probab=46.44 E-value=1e+02 Score=27.98 Aligned_cols=65 Identities=14% Similarity=0.123 Sum_probs=48.2
Q ss_pred cHHHHHHHHHHHHccCCCCceeHHHHHHHHHhhccC--ChHHHHHHHHHHhcC-CCCCcccHHHHHHHHHH
Q psy8447 89 TEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRG--TNEELIKFTFLIYDL-NNDGFITREEMFQLLRN 156 (229)
Q Consensus 89 ~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~--~~~~~~~~~F~~~D~-~~~G~I~~~e~~~~l~~ 156 (229)
++.+ +..+|..+.. ++.++.++|..++...... ...+.+..+++.+.. ...+.++.+.|..+|..
T Consensus 23 ~~~e-i~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 23 APRE-IKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CcHH-HHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 4444 6888888854 4699999999999887654 356677777777643 24677999999999854
No 166
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=45.36 E-value=69 Score=19.98 Aligned_cols=47 Identities=13% Similarity=0.162 Sum_probs=26.3
Q ss_pred CCHHHHHHHHhhhcCCCcHHHHHHHHHHHHccCCCCceeHHHHHHHHHhhc
Q psy8447 72 LDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFL 122 (229)
Q Consensus 72 i~~~ef~~~l~~~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~ 122 (229)
+++..+...+... .++.. ...+...|+.=..+.|+-+||+..++.+.
T Consensus 9 ~~F~~L~~~l~~~---l~~~~-~~~l~~~Y~~~k~~kIsR~~fvr~lR~IV 55 (70)
T PF12174_consen 9 MPFPMLFSALSKH---LPPSK-MDLLQKHYEEFKKKKISREEFVRKLRQIV 55 (70)
T ss_pred ccHHHHHHHHHHH---CCHHH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 5555555555543 33332 34444445444567788888887777664
No 167
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=44.90 E-value=86 Score=20.43 Aligned_cols=51 Identities=14% Similarity=0.023 Sum_probs=38.1
Q ss_pred CceeHHHHHHHHHhhccCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q psy8447 107 GVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNS 157 (229)
Q Consensus 107 g~I~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~ 157 (229)
..||..|++.+.....-..+.+.++.+....-.+.-.-.+.++-..+++.+
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkei 63 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEI 63 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 457888888888777777777777778777766666667777777777765
No 168
>cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Several hy
Probab=44.34 E-value=92 Score=20.58 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=19.3
Q ss_pred CCCCcccHHHHHHHHhcChHHHH
Q psy8447 185 DKDGKISFQDFQQSVTDEPLLLE 207 (229)
Q Consensus 185 ~~dg~Is~~ef~~~~~~~~~~~~ 207 (229)
-+.|+++.+||.-+++++|.-+-
T Consensus 50 ~r~~k~~~eD~~FliR~D~~Kl~ 72 (92)
T cd07978 50 RRRGKVKVEDLIFLLRKDPKKLA 72 (92)
T ss_pred cCCCCCCHHHHHHHHhcCHHHHH
Confidence 46788999999999999997443
No 169
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=44.11 E-value=24 Score=23.87 Aligned_cols=55 Identities=11% Similarity=0.104 Sum_probs=31.2
Q ss_pred cccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcChHHHH
Q psy8447 144 FITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLE 207 (229)
Q Consensus 144 ~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~~~~~~ 207 (229)
.+|.+|+..++...+. . .+-+.-...++....+....+|-+++.++|..+|.+++
T Consensus 35 p~s~~eL~~~l~~~g~--------~-~li~~~~~~yk~l~l~~~~~~s~~e~~~~l~~~p~Lik 89 (105)
T cd03035 35 GLDAATLERWLAKVGW--------E-TLLNKRGTTWRKLDDAQKAALDAAKAIALMLEHPSLIK 89 (105)
T ss_pred CCCHHHHHHHHHHhCh--------H-HHHccCchHHHhCChhhhccCCHHHHHHHHHhCcCeee
Confidence 3566666666665431 0 00001123455544432245788999999999998743
No 170
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=43.30 E-value=15 Score=22.41 Aligned_cols=22 Identities=36% Similarity=0.668 Sum_probs=19.8
Q ss_pred HHhcCCCCCcccHHHHHHHHHH
Q psy8447 135 LIYDLNNDGFITREEMFQLLRN 156 (229)
Q Consensus 135 ~~~D~~~~G~I~~~e~~~~l~~ 156 (229)
++||+..+.+|+.+++.++++.
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 3689999999999999999975
No 171
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=43.05 E-value=93 Score=20.27 Aligned_cols=63 Identities=11% Similarity=-0.037 Sum_probs=42.0
Q ss_pred HHHHHHHHccCCCCceeHHHHHHHHHhhccCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q psy8447 94 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNS 157 (229)
Q Consensus 94 ~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~ 157 (229)
++..++..-.+ +-.|.+.+|...+.....-........+=..+|.-.+|+||.=||.-+.+-.
T Consensus 9 A~~FW~~~Fg~-r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRlF 71 (85)
T PF02761_consen 9 AAEFWKTSFGK-RTIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTRLF 71 (85)
T ss_dssp HHHHHHHHHTT--SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHHT
T ss_pred HHHHHHHHCCC-CeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHHHH
Confidence 34444433222 3579999999999988766665555666667888899999999988877643
No 172
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=41.88 E-value=99 Score=20.68 Aligned_cols=61 Identities=11% Similarity=0.082 Sum_probs=37.6
Q ss_pred eeHHHHHHHHHhhccCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHH
Q psy8447 109 IHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRD 173 (229)
Q Consensus 109 I~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 173 (229)
+.-.+|..++..+....+++++..+-..+-.++...++..++..++..+-...+ +++.++.
T Consensus 20 vP~~Dy~PLlALL~r~Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~vt~~~P----~~~di~R 80 (96)
T PF11829_consen 20 VPPTDYVPLLALLRRRLTDDEVAEVAAELAARGDPPVDRIDIGVAITRVTDELP----TPEDIER 80 (96)
T ss_dssp B-HHHHHHHHHHHTTTS-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHHCSS-S-----HHHHHH
T ss_pred CCCCccHHHHHHhcccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCc----CHHHHHH
Confidence 556667777777777777777777777766666666678888777776643333 4445444
No 173
>KOG0850|consensus
Probab=41.27 E-value=48 Score=25.95 Aligned_cols=51 Identities=10% Similarity=0.111 Sum_probs=39.7
Q ss_pred chhccCcCcHHHHHHHHHHHHHHhhcCCCCCCCCCCchhhhHhhcCCChhHHHHHHhc
Q psy8447 6 MFQLLPLSFRQEVETLCKIFKKLLNSSSNAGVPISTSTPVVVQVSGLPPSNVTERYKG 63 (229)
Q Consensus 6 ~~~~~~~~~~~~i~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 63 (229)
|.+.-|.++.-++..|.++|++=.- ....+=.+++..++|+..+|+-|+..
T Consensus 122 ~RKPRTIYSS~QLqaL~rRFQkTQY-------LALPERAeLAAsLGLTQTQVKIWFQN 172 (245)
T KOG0850|consen 122 VRKPRTIYSSLQLQALNRRFQQTQY-------LALPERAELAASLGLTQTQVKIWFQN 172 (245)
T ss_pred ccCCcccccHHHHHHHHHHHhhcch-------hcCcHHHHHHHHhCCchhHhhhhhhh
Confidence 4566788999999999999996442 33455678889999999999888743
No 174
>KOG0842|consensus
Probab=39.68 E-value=19 Score=29.52 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=37.2
Q ss_pred CcCcHHHHHHHHHHHHHHhhcCCCCCCCCCCchhhhHhhcCCChhHHHHHHhc
Q psy8447 11 PLSFRQEVETLCKIFKKLLNSSSNAGVPISTSTPVVVQVSGLPPSNVTERYKG 63 (229)
Q Consensus 11 ~~~~~~~i~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 63 (229)
..||+.++.+|.++|+..-- .+-.|=..++..++|++.+|+-|+..
T Consensus 158 VLFSqAQV~ELERRFrqQRY-------LSAPERE~LA~~LrLT~TQVKIWFQN 203 (307)
T KOG0842|consen 158 VLFSQAQVYELERRFRQQRY-------LSAPEREHLASSLRLTPTQVKIWFQN 203 (307)
T ss_pred cccchhHHHHHHHHHHhhhc-------cccHhHHHHHHhcCCCchheeeeeec
Confidence 46999999999999996542 34456778999999999999988754
No 175
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=39.59 E-value=1.2e+02 Score=23.10 Aligned_cols=79 Identities=15% Similarity=0.195 Sum_probs=45.0
Q ss_pred CCCCceeHHHHHHHHHhhccCChHHHHHHHHHHhcCCCCCcccHHHHHH-HHHHHhhcCCCCCCChHHHHHHHHHHHHHc
Q psy8447 104 LCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQ-LLRNSLISHPQDEDPDEGVRDLVELALRKM 182 (229)
Q Consensus 104 ~~~g~I~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (229)
|-+|+|+.+++...+...... .+++ .+++.--++.||..+-.. ++..++ . ..++.++-+.+.+
T Consensus 9 DFDGTITl~Ds~~~itdtf~~---~e~k---~l~~~vls~tiS~rd~~g~mf~~i~--~--------s~~Eile~llk~i 72 (220)
T COG4359 9 DFDGTITLNDSNDYITDTFGP---GEWK---ALKDGVLSKTISFRDGFGRMFGSIH--S--------SLEEILEFLLKDI 72 (220)
T ss_pred cCCCceEecchhHHHHhccCc---hHHH---HHHHHHhhCceeHHHHHHHHHHhcC--C--------CHHHHHHHHHhhc
Confidence 568999999998888754321 1222 444555678888665332 332221 1 1233445455434
Q ss_pred CCCCCCcccHHHHHHHHhcC
Q psy8447 183 DYDKDGKISFQDFQQSVTDE 202 (229)
Q Consensus 183 d~~~dg~Is~~ef~~~~~~~ 202 (229)
-. .-.+.+|.+++..+
T Consensus 73 ~I----dp~fKef~e~ike~ 88 (220)
T COG4359 73 KI----DPGFKEFVEWIKEH 88 (220)
T ss_pred cc----CccHHHHHHHHHHc
Confidence 33 25789999998765
No 176
>KOG2871|consensus
Probab=39.59 E-value=19 Score=30.30 Aligned_cols=33 Identities=18% Similarity=0.353 Sum_probs=29.4
Q ss_pred ChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q psy8447 125 TNEELIKFTFLIYDLNNDGFITREEMFQLLRNS 157 (229)
Q Consensus 125 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~ 157 (229)
.+.+.++++|+.+|..++|+|+-.-+..++...
T Consensus 306 ~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~ 338 (449)
T KOG2871|consen 306 NPSEQLRRNFHAYDPEDNNFISCSGLQIVMTAL 338 (449)
T ss_pred CCCHHHHhhhhccCccCCCeeecHHHHHHHHHh
Confidence 456889999999999999999999999888765
No 177
>KOG1264|consensus
Probab=39.55 E-value=1.1e+02 Score=29.05 Aligned_cols=150 Identities=15% Similarity=0.093 Sum_probs=73.2
Q ss_pred ccchhccCcCcHHHHHHHH-HHHHHHhhcCCCCCCCCCCchhhhHhhcCCChhHHHHHHhccCccCCC--CCCHHHHHHH
Q psy8447 4 HLMFQLLPLSFRQEVETLC-KIFKKLLNSSSNAGVPISTSTPVVVQVSGLPPSNVTERYKGFSPFSFQ--GLDRVVFREL 80 (229)
Q Consensus 4 ~~~~~~~~~~~~~~i~~l~-~~f~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~f~~~d~~--~i~~~ef~~~ 80 (229)
|.+.......++.+|+.+. +.+..+++..-.. +..-++.......++.....+-+.+.|...... .+++.+|..+
T Consensus 128 w~~~dtl~a~~p~qI~~wlrk~~ysvd~~~~~~--isard~k~~l~qvn~k~~~~kfl~e~~ted~~~k~dlsf~~f~~l 205 (1267)
T KOG1264|consen 128 WLHQDTLNAPTPLQIERWLRKQIYSVDQTRENS--ISARDLKTILPQVNFKVSSAKFLKEKFTEDGARKDDLSFEQFHLL 205 (1267)
T ss_pred hhhhhhccCCChHHHHHHHHhhheeccchhhhh--eeHHhhhcccccceEEechHHHHHHHHhHhhhccccccHHHHHHH
Confidence 3344555666777777643 3444444322111 111122222222222233334444556554433 3999999999
Q ss_pred HhhhcCCCcHHHHHHH----HHHHHccCCCCceeHHHHHHHHHhhccC---ChHHHHHHHHHHhcCC-----CCCcccHH
Q psy8447 81 LHNTFDLVTEEILMER----IFCAFDRLCDGVIHLDEWVLGLSCFLRG---TNEELIKFTFLIYDLN-----NDGFITRE 148 (229)
Q Consensus 81 l~~~~~~~~~~~~~~~----lf~~~d~~~~g~I~~~ef~~~~~~~~~~---~~~~~~~~~F~~~D~~-----~~G~I~~~ 148 (229)
+..+.........+.. +...-++-.--.+++.+|..++...... +....++.....|=.| ..-+++..
T Consensus 206 y~~lmfs~~~a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~ 285 (1267)
T KOG1264|consen 206 YKKLMFSQQKAILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVD 285 (1267)
T ss_pred HHHHhhccchhhhhcccchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHH
Confidence 9887543222221111 1111111112479999999998875432 1112333333333211 35688888
Q ss_pred HHHHHHH
Q psy8447 149 EMFQLLR 155 (229)
Q Consensus 149 e~~~~l~ 155 (229)
||+.+|=
T Consensus 286 EFv~fLF 292 (1267)
T KOG1264|consen 286 EFVTFLF 292 (1267)
T ss_pred HHHHHHh
Confidence 8888773
No 178
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=38.76 E-value=1.5e+02 Score=21.53 Aligned_cols=72 Identities=14% Similarity=0.249 Sum_probs=39.2
Q ss_pred CCCCceeHHHHHHHHHhhccCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcC
Q psy8447 104 LCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMD 183 (229)
Q Consensus 104 ~~~g~I~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 183 (229)
+.+|.|++..|..++...+. +.+..-|- .+..+.+.+++... +..+++.+.
T Consensus 95 ~~n~~i~~~~ff~~lQ~~lG----dWIT~~~L----kh~n~MSk~Qik~L---------------------~~~Ii~~ak 145 (175)
T PF04876_consen 95 STNGLIDIGKFFDILQPKLG----DWITKNFL----KHPNRMSKDQIKTL---------------------CEQIIEMAK 145 (175)
T ss_pred CcccceeHHHHHHHHHHHhh----hHHHHHHH----hccchhhHHHHHHH---------------------HHHHHHHHh
Confidence 34667888777777765432 12222221 22344455544444 444444443
Q ss_pred CCCCCcccHHHHHHHHhcChHHHH
Q psy8447 184 YDKDGKISFQDFQQSVTDEPLLLE 207 (229)
Q Consensus 184 ~~~dg~Is~~ef~~~~~~~~~~~~ 207 (229)
.++ +.=+++..+..+.|.+..
T Consensus 146 ae~---~dtE~Ye~vwkKmPaY~~ 166 (175)
T PF04876_consen 146 AES---SDTEHYEKVWKKMPAYFS 166 (175)
T ss_pred ccC---CchHHHHHHHHHhhHHHH
Confidence 222 455888888889998765
No 179
>COG3793 TerB Tellurite resistance protein [Inorganic ion transport and metabolism]
Probab=37.97 E-value=1.6e+02 Score=21.37 Aligned_cols=64 Identities=16% Similarity=0.147 Sum_probs=39.6
Q ss_pred CCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCC-CcccHHHHHHHHhcChHH
Q psy8447 142 DGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKD-GKISFQDFQQSVTDEPLL 205 (229)
Q Consensus 142 ~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d-g~Is~~ef~~~~~~~~~~ 205 (229)
+|-++.+|...++.-+-....-.....+.+....+.+...++.+.+ |++.-.+.+..+...+..
T Consensus 38 dg~~~~~e~~~~~~~~~s~~~L~~f~~~~i~~~~~~~~~~~~~d~~~gk~ea~~~I~~lk~d~e~ 102 (144)
T COG3793 38 DGEVDSEEKQKMVQFLRSSAALSVFDSNEINEIFETLVGSFDTDFEIGKREAMKEIEDLKHDTEA 102 (144)
T ss_pred ccccChHHHHHHHHHHHcChhhhhccHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhcCChHH
Confidence 5777777777777654322111222233444556666667777777 788888888888877753
No 180
>PLN02230 phosphoinositide phospholipase C 4
Probab=37.64 E-value=1.8e+02 Score=26.54 Aligned_cols=32 Identities=9% Similarity=0.236 Sum_probs=17.0
Q ss_pred ChhHHHHHHhccCccCCCCCCHHHHHHHHhhhc
Q psy8447 53 PPSNVTERYKGFSPFSFQGLDRVVFRELLHNTF 85 (229)
Q Consensus 53 ~~~~~~~l~~~f~~~d~~~i~~~ef~~~l~~~~ 85 (229)
++.++..++..|.... +.++.++|..++....
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q 58 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEG 58 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhC
Confidence 4455666665554222 3366666666666543
No 181
>PRK06049 rpl30p 50S ribosomal protein L30P; Reviewed
Probab=37.43 E-value=1.2e+02 Score=22.19 Aligned_cols=48 Identities=21% Similarity=0.275 Sum_probs=25.5
Q ss_pred CcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcC
Q psy8447 143 GFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDE 202 (229)
Q Consensus 143 G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~ 202 (229)
|.++.+.+..++..-+.......++++.+.+ . -|.++.+|+.+.+...
T Consensus 56 ge~~~~tv~~Li~kRG~~~g~~~ltd~~i~e---~---------~g~~~iedl~~~i~~~ 103 (154)
T PRK06049 56 GEIDADTLAELLRKRGRLEGNKKLTDEYVKE---N---------TGYDSIEELAEALVEG 103 (154)
T ss_pred eeCchHHHHHHHHHhCcccCCCCCCHHHHHH---h---------cCCccHHHHHHHHHhC
Confidence 5566666666666554322223344433222 0 2667888888766544
No 182
>KOG0843|consensus
Probab=36.66 E-value=60 Score=24.42 Aligned_cols=47 Identities=11% Similarity=0.070 Sum_probs=32.4
Q ss_pred cCcCcHHHHHHHHHHHHHHhhcCCCCCCCCCCchhhhHhhcCCChhHHHHHHhc
Q psy8447 10 LPLSFRQEVETLCKIFKKLLNSSSNAGVPISTSTPVVVQVSGLPPSNVTERYKG 63 (229)
Q Consensus 10 ~~~~~~~~i~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 63 (229)
-|.||.+++..|...|...- . ..-.+-.++++.++|++.+|+-|+..
T Consensus 106 RT~ft~~Ql~~LE~~F~~~~-----Y--vvg~eR~~LA~~L~LsetQVkvWFQN 152 (197)
T KOG0843|consen 106 RTAFTPEQLLKLEHAFEGNQ-----Y--VVGAERKQLAQSLSLSETQVKVWFQN 152 (197)
T ss_pred ccccCHHHHHHHHHHHhcCC-----e--eechHHHHHHHHcCCChhHhhhhhhh
Confidence 46788888888888876322 1 22235567888888888888877643
No 183
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=36.64 E-value=1.9e+02 Score=22.13 Aligned_cols=69 Identities=10% Similarity=0.254 Sum_probs=47.1
Q ss_pred CcCcHHHHHH---HHHHHHHHhhcCCCCCCCCCCchhhhHhhcCCChhHHHHHHhccCccCCCC--CCHHHHHHHHhhh
Q psy8447 11 PLSFRQEVET---LCKIFKKLLNSSSNAGVPISTSTPVVVQVSGLPPSNVTERYKGFSPFSFQG--LDRVVFRELLHNT 84 (229)
Q Consensus 11 ~~~~~~~i~~---l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~f~~~d~~~--i~~~ef~~~l~~~ 84 (229)
.+++.....+ +++.+..+..++.. ..+-.++++..++++..+++=+..|....+.+ -+-..+..++...
T Consensus 5 ~~IP~AT~kRL~~YyR~le~l~a~~v~-----rvsS~els~~~~vdsatIRrDfSYFG~lGkrG~GYnV~~L~~ff~~~ 78 (211)
T COG2344 5 KKIPKATAKRLPLYYRVLERLHASGVE-----RVSSKELSEALGVDSATIRRDFSYFGELGKRGYGYNVKYLRDFFDDL 78 (211)
T ss_pred ccCCHHHHHHhHHHHHHHHHHHHcCCc-----eecHHHHHHHhCCCHHHHhhhhHHHHhcCCCCCCccHHHHHHHHHHH
Confidence 3555555555 44555555554432 34567888999999999999888888888765 5666676666664
No 184
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=36.10 E-value=1.4e+02 Score=20.16 Aligned_cols=59 Identities=15% Similarity=0.226 Sum_probs=37.2
Q ss_pred HHHHHHHHccCCCCceeHHHHHHHHHhhccCChHHHHHHHHHHhcCC---CCCcccHHHHHHHHHHH
Q psy8447 94 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLN---NDGFITREEMFQLLRNS 157 (229)
Q Consensus 94 ~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~~---~~G~I~~~e~~~~l~~~ 157 (229)
++.-|..+-. +|.+....|-..+.+. ...+-+..+|...-.. ..+.|+.+|+..++.++
T Consensus 32 VE~RFd~La~--dG~L~rs~Fg~CIGM~---dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 32 VEKRFDKLAK--DGLLPRSDFGECIGMK---DSKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHHHHHH-B--TTBEEGGGHHHHHT-----S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred HHHHHHHhCc--CCcccHHHHHHhcCCc---ccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 4555555545 8999999999887754 3344445555544221 25789999999999876
No 185
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=35.86 E-value=1e+02 Score=21.02 Aligned_cols=57 Identities=19% Similarity=0.325 Sum_probs=33.3
Q ss_pred CcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcChHHHH
Q psy8447 143 GFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLE 207 (229)
Q Consensus 143 G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~~~~~~ 207 (229)
..++.+|+..++..++.. .+.+-+.-...++....+. ..+|-+|+.++|..+|.+++
T Consensus 35 ~~~~~~el~~~~~~~~~~-------~~~l~n~~~~~~k~l~~~~-~~ls~~e~i~~l~~~p~Lik 91 (115)
T cd03032 35 QPLTKEELKEILSLTENG-------VEDIISTRSKAFKNLNIDI-DELSLSELIRLISEHPSLLR 91 (115)
T ss_pred CcchHHHHHHHHHHhcCC-------HHHHHhcCcHHHHHcCCCc-ccCCHHHHHHHHHhChhhee
Confidence 445777777777665211 0011111223455554333 45789999999999998744
No 186
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=34.72 E-value=3.3e+02 Score=24.14 Aligned_cols=113 Identities=19% Similarity=0.113 Sum_probs=72.5
Q ss_pred CCHHHHHHHHhhh--cCCCcHHHHHHHHHHHHccCCCCceeHHHHHHHHHhhccCChHHHHHHHHHHhcCCCCCcccHHH
Q psy8447 72 LDRVVFRELLHNT--FDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREE 149 (229)
Q Consensus 72 i~~~ef~~~l~~~--~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e 149 (229)
.+..+|.-++-.- ..+-+.+..+..+|+..|.++==.|+..++..++..+.. ..+..-.. -|.|+...
T Consensus 106 aTvsemGPlLLsrlL~LNdtQ~gvL~i~F~~ADd~gLlLlDLkDLra~l~~v~e-----~~~e~~~~-----yG~is~aS 175 (502)
T PF05872_consen 106 ATVSEMGPLLLSRLLELNDTQEGVLNIVFRIADDEGLLLLDLKDLRAMLQYVSE-----NAKELSAE-----YGNISSAS 175 (502)
T ss_pred eeHHhhchHHHHHHhccchHHHHHHHHHHHHhccCCCccccHHHHHHHHHHHHh-----hHHHHHHH-----cCCccHHH
Confidence 4455665544433 223455667888999999988889999999999988732 22222223 48899999
Q ss_pred HHHHHHHHhh----------cCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcChHH
Q psy8447 150 MFQLLRNSLI----------SHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLL 205 (229)
Q Consensus 150 ~~~~l~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~~~~ 205 (229)
+-.+++.+.. ..|.-+ +..+++ .|.++.|.|+.-+--.++. .|.+
T Consensus 176 ~gaI~R~ll~LE~qG~d~FFGEPald---------i~Dl~r-~~~~GrG~IniL~a~~l~~-~P~L 230 (502)
T PF05872_consen 176 IGAIQRALLVLEQQGGDQFFGEPALD---------IEDLMR-TDADGRGVINILAADKLMN-SPKL 230 (502)
T ss_pred HHHHHHHHHHHHHcchHhhCCCccCC---------HHHHhc-cCCCCCEEEEEEEhHhhhh-CcHH
Confidence 9888888642 111111 333443 3467888998877776665 5543
No 187
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=33.56 E-value=1.1e+02 Score=18.37 Aligned_cols=33 Identities=18% Similarity=0.157 Sum_probs=20.8
Q ss_pred CChHHHHHHHHHHh--cCCCCCcccHHHHHHHHHHH
Q psy8447 124 GTNEELIKFTFLIY--DLNNDGFITREEMFQLLRNS 157 (229)
Q Consensus 124 ~~~~~~~~~~F~~~--D~~~~G~I~~~e~~~~l~~~ 157 (229)
..+-+++..+.+.| +. +...++.+|+..++...
T Consensus 11 sl~l~RIh~mLkmf~~~~-~~~~~s~~eL~~fL~~l 45 (60)
T PF08672_consen 11 SLPLDRIHSMLKMFPKDP-GGYDISLEELQEFLDRL 45 (60)
T ss_dssp SEEHHHHHHHHHHH-GGG---TT--HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhccCCC-CCCCCCHHHHHHHHHHH
Confidence 35667777777777 44 44567888888888765
No 188
>KOG4718|consensus
Probab=33.18 E-value=45 Score=25.73 Aligned_cols=58 Identities=16% Similarity=0.184 Sum_probs=33.3
Q ss_pred hhccCcCcHHHHHHHHHHHHHHhhc-CCCCCCCCCCchh-hhHhhcCCChhHHHHHHhcc
Q psy8447 7 FQLLPLSFRQEVETLCKIFKKLLNS-SSNAGVPISTSTP-VVVQVSGLPPSNVTERYKGF 64 (229)
Q Consensus 7 ~~~~~~~~~~~i~~l~~~f~~l~~~-~~~~~~~~~~~~~-~~~~~~~l~~~~~~~l~~~f 64 (229)
.++.|.|++.|++.+++...++..+ ..+....+..... ...+..++.+..++.+...|
T Consensus 87 SkmaT~f~~nEielfrkalE~im~sed~~~asst~~~~~vlq~k~k~L~ks~iE~lLqkf 146 (235)
T KOG4718|consen 87 SKMATGFTANEIELFRKALEKIMSSEDCHIASSTAYNDIVLQAKSKPLKKSRIEELLQKF 146 (235)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHhhhHhhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4678999999999999988888776 3333222221111 22233445555555544443
No 189
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=33.03 E-value=1.4e+02 Score=19.56 Aligned_cols=62 Identities=21% Similarity=0.227 Sum_probs=37.3
Q ss_pred cCCChhHHHHHHhccCccCCCCCCHHHHHHHHhhhcCCCcHHHHHHHHHHHHccCCCCceeHHH
Q psy8447 50 SGLPPSNVTERYKGFSPFSFQGLDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDE 113 (229)
Q Consensus 50 ~~l~~~~~~~l~~~f~~~d~~~i~~~ef~~~l~~~~~~~~~~~~~~~lf~~~d~~~~g~I~~~e 113 (229)
.++++.+...++..|.....+..+..+|...+...........++..+|...-. ||.++-.|
T Consensus 32 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA~A--DG~~~~~E 93 (104)
T cd07313 32 FGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVAYA--DGELDEYE 93 (104)
T ss_pred hCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh--cCCCCHHH
Confidence 356677788888887766555577777777766543222233445555555433 45566655
No 190
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=32.96 E-value=85 Score=21.36 Aligned_cols=54 Identities=24% Similarity=0.352 Sum_probs=33.0
Q ss_pred CcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHH---HHHHHcCCCCCCcccHHHHHHHHhcChHHHH
Q psy8447 143 GFITREEMFQLLRNSLISHPQDEDPDEGVRDLVE---LALRKMDYDKDGKISFQDFQQSVTDEPLLLE 207 (229)
Q Consensus 143 G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~~~dg~Is~~ef~~~~~~~~~~~~ 207 (229)
-.+|.+|+..++..++.. +.+++. ..++....+. ..++-+++.++|..+|.+++
T Consensus 34 ~~~t~~el~~~l~~~~~~----------~~~lin~~~~~y~~l~~~~-~~ls~~e~i~ll~~~P~Lik 90 (112)
T cd03034 34 TPPTAAELRELLAKLGIS----------PRDLLRTKEAPYKELGLAD-PELSDEELIDAMAAHPILIE 90 (112)
T ss_pred CCcCHHHHHHHHHHcCCC----------HHHHHhcCCchHHHcCCCc-cCCCHHHHHHHHHhCcCccc
Confidence 346778887777765311 111111 2344444332 46889999999999998754
No 191
>PRK10026 arsenate reductase; Provisional
Probab=32.85 E-value=65 Score=23.20 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=32.6
Q ss_pred cccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcChHHHH
Q psy8447 144 FITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLE 207 (229)
Q Consensus 144 ~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~~~~~~ 207 (229)
.+|.+|+..++...+.. ...+-+.-...++....+.+ .+|.+++..+|..+|.+++
T Consensus 38 ppt~~eL~~~l~~~g~~-------~~~lint~~~~yr~L~~~~~-~ls~~e~l~ll~~~P~LIK 93 (141)
T PRK10026 38 PPTRDELVKLIADMGIS-------VRALLRKNVEPYEELGLAED-KFTDDQLIDFMLQHPILIN 93 (141)
T ss_pred CcCHHHHHHHHHhCCCC-------HHHHHHcCCchHHHcCCCcc-CCCHHHHHHHHHhCcccee
Confidence 45777777777654310 00111111234555554433 4799999999999998654
No 192
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=32.48 E-value=11 Score=19.16 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=14.2
Q ss_pred HHHHHHcCCCCCCcccHHH
Q psy8447 176 ELALRKMDYDKDGKISFQD 194 (229)
Q Consensus 176 ~~~~~~~d~~~dg~Is~~e 194 (229)
+.++..-|++++-+|+.++
T Consensus 2 ~~LL~qEDTDgn~qITIeD 20 (30)
T PF07492_consen 2 RSLLEQEDTDGNFQITIED 20 (30)
T ss_pred hhHhhccccCCCcEEEEec
Confidence 3466777889998888765
No 193
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=31.93 E-value=97 Score=17.22 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=18.9
Q ss_pred HHHHHHHhc-C-CCCCcccHHHHHHHHHH
Q psy8447 130 IKFTFLIYD-L-NNDGFITREEMFQLLRN 156 (229)
Q Consensus 130 ~~~~F~~~D-~-~~~G~I~~~e~~~~l~~ 156 (229)
+..+|..|- . .....+++.||..++..
T Consensus 8 iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 8 IIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 456677774 2 24568899999888865
No 194
>PHA02335 hypothetical protein
Probab=31.53 E-value=63 Score=21.91 Aligned_cols=42 Identities=12% Similarity=0.353 Sum_probs=32.0
Q ss_pred HHHHHHHcCCCCCCcccHHHHHHHHhcChHHHHHhcccCCChHH
Q psy8447 175 VELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAFGQCLPSDAA 218 (229)
Q Consensus 175 ~~~~~~~~d~~~dg~Is~~ef~~~~~~~~~~~~~~~~~~~~~~~ 218 (229)
+.-+++.+ ++-..||++||..-+.+..-+-+.|.++.++++-
T Consensus 12 m~fAi~~Y--~np~sVt~ddf~~DlkRi~yIkrllKRy~~~~~~ 53 (118)
T PHA02335 12 MLFAIKNY--NNPQSVTYDDFEEDLKRFKYIKRLFKRYLNTGEL 53 (118)
T ss_pred HHHHHHhc--CCcccccHHHHHHHHHHHHHHHHHHHhhcCCCCh
Confidence 33344544 4556799999999999999888899999887654
No 195
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=31.49 E-value=34 Score=23.16 Aligned_cols=57 Identities=18% Similarity=0.202 Sum_probs=32.2
Q ss_pred cccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcChHHHH
Q psy8447 144 FITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLE 207 (229)
Q Consensus 144 ~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~~~~~~ 207 (229)
.+|.+|+..++..++... ...++. -...++..+......+|-+++.++|..+|.+++
T Consensus 32 p~s~~el~~~l~~~~~~~-~~lin~------~~~~~k~l~~~~~~~~s~~e~i~~l~~~p~Lik 88 (110)
T PF03960_consen 32 PLSREELRELLSKLGNGP-DDLINT------RSKTYKELGKLKKDDLSDEELIELLLENPKLIK 88 (110)
T ss_dssp ---HHHHHHHHHHHTSSG-GGGB-T------TSHHHHHTTHHHCTTSBHHHHHHHHHHSGGGB-
T ss_pred CCCHHHHHHHHHHhcccH-HHHhcC------ccchHhhhhhhhhhhhhhHHHHHHHHhChhhee
Confidence 479999999998876221 111111 012344443112356899999999999998743
No 196
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=31.40 E-value=1.8e+02 Score=22.52 Aligned_cols=88 Identities=9% Similarity=0.142 Sum_probs=46.2
Q ss_pred CCHHHHHHHHhhhcCCCcHHHHHHHHHHHHccCCCCceeHHHHHHHHHhhccCChHHHHHHHHHHhcCCCCCcc-cHHHH
Q psy8447 72 LDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFI-TREEM 150 (229)
Q Consensus 72 i~~~ef~~~l~~~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I-~~~e~ 150 (229)
++...|.+.+.......+.++....||...-.=....--++.|+.-+..-......++++.-|+.+=-+.+..+ +++-+
T Consensus 28 f~t~lFd~~~~~~~s~q~~ee~F~~l~~sV~~m~~~i~~~n~fl~~~~~~~~~~~~~~~~~YyKkhIy~~d~~v~d~~~l 107 (205)
T PF12238_consen 28 FKTSLFDETVLSNLSGQSDEEKFKSLFDSVPLMKHKISHMNAFLNDWPPHMLEEGREKMTKYYKKHIYKEDSEVKDYNGL 107 (205)
T ss_pred CchhhhhHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCchhhhhccHHHHHHHHHHhccCcccccccHHHH
Confidence 66666666555554445555444444443211011112233333322222222344677778877656666777 88888
Q ss_pred HHHHHHHhh
Q psy8447 151 FQLLRNSLI 159 (229)
Q Consensus 151 ~~~l~~~~~ 159 (229)
..+++.++.
T Consensus 108 v~~ck~Fl~ 116 (205)
T PF12238_consen 108 VKFCKDFLD 116 (205)
T ss_pred HHHHHHHhc
Confidence 888877653
No 197
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=31.12 E-value=25 Score=19.17 Aligned_cols=25 Identities=12% Similarity=0.334 Sum_probs=17.6
Q ss_pred CCCCchhhhHhhcCCChhHHHHHHh
Q psy8447 38 PISTSTPVVVQVSGLPPSNVTERYK 62 (229)
Q Consensus 38 ~~~~~~~~~~~~~~l~~~~~~~l~~ 62 (229)
|+..+...+++.++++..+|..++.
T Consensus 11 Ps~~ek~~L~~~tgls~~Qi~~WF~ 35 (40)
T PF05920_consen 11 PSKEEKEELAKQTGLSRKQISNWFI 35 (40)
T ss_dssp --HHHHHHHHHHHTS-HHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5566677888889999988888764
No 198
>KOG2301|consensus
Probab=31.05 E-value=49 Score=33.70 Aligned_cols=68 Identities=12% Similarity=0.044 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHh
Q psy8447 127 EELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVT 200 (229)
Q Consensus 127 ~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~ 200 (229)
-+....++..||++..|+|...++..+++.+-....-....+. +.+--.+-..++|.|++.+-+-++.
T Consensus 1416 ~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~------kli~mdmp~~~gd~V~f~d~L~aL~ 1483 (1592)
T KOG2301|consen 1416 FEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR------KLISMDLPMVSGDRVHCLDILFALT 1483 (1592)
T ss_pred HHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc------eeeeeecCcCCCCeeehhhHHHHHH
Confidence 3567789999999999999999999999876432211111111 2233333345666777776666554
No 199
>KOG4286|consensus
Probab=30.59 E-value=4e+02 Score=25.15 Aligned_cols=107 Identities=8% Similarity=0.025 Sum_probs=63.6
Q ss_pred cCCCcHHHHHHHHHHHHccCC-CCceeHHHHHHHHHhhcc----------CCh---HHHHHHHHHHhcCCCCCcccHHHH
Q psy8447 85 FDLVTEEILMERIFCAFDRLC-DGVIHLDEWVLGLSCFLR----------GTN---EELIKFTFLIYDLNNDGFITREEM 150 (229)
Q Consensus 85 ~~~~~~~~~~~~lf~~~d~~~-~g~I~~~ef~~~~~~~~~----------~~~---~~~~~~~F~~~D~~~~G~I~~~e~ 150 (229)
+....+-..+..+|..++-.+ +...+..+.+..+..... ..+ +--+.+++++||...+|.|..-+|
T Consensus 413 ~ldlv~ltl~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~R~g~irvls~ 492 (966)
T KOG4286|consen 413 CLDLLSLSLALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSF 492 (966)
T ss_pred HhccccHHHHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccCCCcceEEeee
Confidence 333444444667777776543 345555555554443211 111 234678999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhc
Q psy8447 151 FQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTD 201 (229)
Q Consensus 151 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~ 201 (229)
+-.+..+.. . ..++.+.-+|+..-.++. .+.-..|..++..
T Consensus 493 ki~~i~lck-~--------~leek~~ylF~~vA~~~s-q~~q~~l~lLL~d 533 (966)
T KOG4286|consen 493 KIGIISLCK-A--------HLEDKYRYLFKQVASSTS-QCDQRRLGLLLHD 533 (966)
T ss_pred hhhHHHHhc-c--------hhHHHHHHHHHHHcCchh-hHHHHHHHHHHHH
Confidence 888765532 1 345567778888854333 3335555555443
No 200
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=30.11 E-value=2.1e+02 Score=21.83 Aligned_cols=57 Identities=12% Similarity=-0.053 Sum_probs=33.0
Q ss_pred HHHHHhhhcCCCcHHHHHHHHHHHHccCCCCceeHHHHHHHHHhhccCChHHHHHHHHHHh
Q psy8447 77 FRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIY 137 (229)
Q Consensus 77 f~~~l~~~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~~~~F~~~ 137 (229)
+.+++....... ..++...+.+.|..|+.|.|+....+.+...- ..++++..+++.+
T Consensus 105 Ide~l~~w~~g~-~~~l~~lV~~af~~dk~G~l~~~rIl~Lrrl~---i~D~~w~~am~aI 161 (195)
T PF11363_consen 105 IDECLNEWAKGA-DPELRALVNRAFQVDKEGNLNTSRILGLRRLE---IDDERWQEAMDAI 161 (195)
T ss_pred HHHHHHHHhcCC-ChHHHHHHHHHHhcCCCCCcCHHHHHHHHhcc---CCCHHHHHHHHHH
Confidence 445555544333 34445556677888888888888877666542 2234444444443
No 201
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=30.04 E-value=1.4e+02 Score=19.32 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=14.9
Q ss_pred ChHHHHHHHHHHhcCCCCCcc
Q psy8447 125 TNEELIKFTFLIYDLNNDGFI 145 (229)
Q Consensus 125 ~~~~~~~~~F~~~D~~~~G~I 145 (229)
+++.++..||++|..+++-.+
T Consensus 56 SS~~EL~EA~rl~~~n~~~~l 76 (83)
T cd06404 56 SSQMELEEAFRLYELNKDSEL 76 (83)
T ss_pred cCHHHHHHHHHHHHhcCcccE
Confidence 456778888888887776544
No 202
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=29.33 E-value=52 Score=22.80 Aligned_cols=31 Identities=19% Similarity=0.393 Sum_probs=19.7
Q ss_pred cHHHHHHHHHHHHccCCCCceeHHHHHHHHHh
Q psy8447 89 TEEILMERIFCAFDRLCDGVIHLDEWVLGLSC 120 (229)
Q Consensus 89 ~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~ 120 (229)
+.+. .++++..+=.|..|.|.|.||+.-+..
T Consensus 5 tDeQ-FdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 5 TDEQ-FDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp -HHH-HHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred cHHH-hhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 4444 577888888888999999999887664
No 203
>TIGR02395 rpoN_sigma RNA polymerase sigma-54 factor. A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called sigma-54, or RpoN (unrelated to sigma 70-type factors such as RpoD/SigA). RpoN is responsible for enhancer-dependent transcription, and its presence characteristically is associated with varied panels of activators, most of which are enhancer-binding proteins (but see Brahmachary, et al., PubMed:15231786). RpoN may be responsible for transcription of nitrogen fixation genes, flagellins, pilins, etc., and synonyms for the gene symbol rpoN, such as ntrA, reflect these observations
Probab=28.47 E-value=1e+02 Score=26.75 Aligned_cols=67 Identities=10% Similarity=0.056 Sum_probs=46.7
Q ss_pred cCcHHHHHHHHHHHHHHhhcCCCCCCCCCCchhhhHhhcCCChhHHHHHHhccCccCCCCCCHHHHHHHHhh
Q psy8447 12 LSFRQEVETLCKIFKKLLNSSSNAGVPISTSTPVVVQVSGLPPSNVTERYKGFSPFSFQGLDRVVFRELLHN 83 (229)
Q Consensus 12 ~~~~~~i~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~f~~~d~~~i~~~ef~~~l~~ 83 (229)
.+++.+..-...+-..++.++. -..+...++...+++..++..++......++.||...++.+++.-
T Consensus 90 ~~~~~~~~ia~~iI~~LD~~Gy-----L~~~~~eia~~l~~~~~~ve~~l~~iq~leP~GIgAr~L~EcLll 156 (429)
T TIGR02395 90 LFTERDRKIALYIIDNLDEDGY-----LEIDLEEIADELEVSEEEVEKVLELIQRLDPAGVGARDLQECLLL 156 (429)
T ss_pred CCCHHHHHHHHHHHHhCCCCCC-----CCCCHHHHHHHcCCCHHHHHHHHHHHhcCCCCccCcCCHHHHHHH
Confidence 3555555544444555554432 345677888888999999999999999999988777777766553
No 204
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=28.14 E-value=1e+02 Score=21.02 Aligned_cols=58 Identities=17% Similarity=0.247 Sum_probs=32.6
Q ss_pred CcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcChHHHH
Q psy8447 143 GFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLE 207 (229)
Q Consensus 143 G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~~~~~~ 207 (229)
-.+|.+|+..++..++... ..+.+ +.-...++....+. ..++-+++.++|..+|.+++
T Consensus 34 ~p~t~~el~~~l~~~g~~~-----~~~li-n~~~~~~~~l~~~~-~~ls~~e~i~~l~~~P~Lik 91 (114)
T TIGR00014 34 NPPTKSELEAIFAKLGLTV-----AREMI-RTKEALYKELGLSD-PNLSDQELLDAMVAHPILLE 91 (114)
T ss_pred CCcCHHHHHHHHHHcCCch-----HHHHH-hcCCcHHHHcCCCc-cCCCHHHHHHHHHHCcCccc
Confidence 3467777777776653210 00000 01122444444332 35788999999999998754
No 205
>PF09873 DUF2100: Uncharacterized protein conserved in archaea (DUF2100); InterPro: IPR019210 This entry represents various hypothetical archaeal proteins, and has no known function.
Probab=28.04 E-value=2e+02 Score=22.16 Aligned_cols=19 Identities=16% Similarity=0.314 Sum_probs=13.5
Q ss_pred CCCCceeHHHHHHHHHhhc
Q psy8447 104 LCDGVIHLDEWVLGLSCFL 122 (229)
Q Consensus 104 ~~~g~I~~~ef~~~~~~~~ 122 (229)
-..|.|+-++|..++..+.
T Consensus 37 ak~G~Id~~e~kkav~~li 55 (215)
T PF09873_consen 37 AKPGKIDVEEFKKAVYSLI 55 (215)
T ss_pred CCCCcccHHHHHHHHHHHH
Confidence 3557888888888777653
No 206
>PRK05932 RNA polymerase factor sigma-54; Reviewed
Probab=28.02 E-value=1.2e+02 Score=26.61 Aligned_cols=67 Identities=13% Similarity=0.106 Sum_probs=47.7
Q ss_pred cCcHHHHHHHHHHHHHHhhcCCCCCCCCCCchhhhHhhcCCChhHHHHHHhccCccCCCCCCHHHHHHHHhh
Q psy8447 12 LSFRQEVETLCKIFKKLLNSSSNAGVPISTSTPVVVQVSGLPPSNVTERYKGFSPFSFQGLDRVVFRELLHN 83 (229)
Q Consensus 12 ~~~~~~i~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~f~~~d~~~i~~~ef~~~l~~ 83 (229)
.+++.+..-..-+-..++.++. -..+...++...+++..++..++......++.||....+.+++.-
T Consensus 115 ~l~~~~~~ia~~iI~~LD~~Gy-----L~~~~~eia~~l~~~~~~v~~~l~~lQ~leP~GigAr~L~ECLll 181 (455)
T PRK05932 115 PFSETDRAIATYIIDALDDEGY-----LTEDLEEIAESLGVELDEVEAVLKRIQSFDPAGVGARDLQECLLL 181 (455)
T ss_pred CCCHHHHHHHHHHHHhCCCCCC-----CCCCHHHHHHHcCCCHHHHHHHHHHHhcCCCCccCcCCHHHHHHH
Confidence 3555555554444444544332 335678888888999999999999999999988887777776654
No 207
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=27.93 E-value=1.5e+02 Score=19.31 Aligned_cols=59 Identities=12% Similarity=0.068 Sum_probs=36.5
Q ss_pred CCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcChHHHHHhcccC
Q psy8447 141 NDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAFGQCL 213 (229)
Q Consensus 141 ~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~~~~~~~~~~~~ 213 (229)
++|.|+.+|...+...- +-.+.+++++... -..|..-.+-|..++.+-.+..--+++|+
T Consensus 26 ~n~~it~E~y~~V~a~~------------T~qdkmRkLld~v--~akG~~~k~~F~~iL~e~~~~y~~~~~~~ 84 (85)
T cd08324 26 KNDYFSTEDAEIVCACP------------TQPDKVRKILDLV--QSKGEEVSEYFLYLLQQLADAYVDLRPWL 84 (85)
T ss_pred ccCCccHHHHHHHHhCC------------CCHHHHHHHHHHH--HhcCchHHHHHHHHHHHHHHhhhhhhccc
Confidence 57899999876665321 1222466666654 34677778888888876655544455443
No 208
>cd01657 Ribosomal_L7_archeal_euk Ribosomal protein L7, which is found in archaea and eukaryotes but not in prokaryotes, binds domain II of the 23S rRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L7 members have an N-terminal extension not found in the archeal L7 orthologs. L7 is closely related to the ribosomal L30 protein found in eukaryotes and prokaryotes.
Probab=27.18 E-value=2.4e+02 Score=20.73 Aligned_cols=54 Identities=20% Similarity=0.116 Sum_probs=32.5
Q ss_pred CCcccHHHHHHHHHHHhhcCCC---CCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcChH
Q psy8447 142 DGFITREEMFQLLRNSLISHPQ---DEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPL 204 (229)
Q Consensus 142 ~G~I~~~e~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~~~ 204 (229)
=|.++.+-++.++...+.-..+ ..++++.+ +++.+ ..|.++.+|+...+..-..
T Consensus 54 ~ge~~~~tv~~Li~kRG~~~~~~~~~~ltdn~i---ie~~l------~~gi~ciedlv~~i~~~~~ 110 (159)
T cd01657 54 WGEPNLETLRELIYKRGRLKGNGQRIPLTDNYL---VEKTL------KKGIICIEDLAHEIYTGGP 110 (159)
T ss_pred eccCcHHHHHHHHHHhCeecCCCeeeeCChHHH---HHHHc------ccCcccHHHHHHHHHhCcc
Confidence 4777777777777776543322 23344332 22222 3488999999998876553
No 209
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=26.83 E-value=79 Score=16.27 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=12.7
Q ss_pred CCCcccHHHHHHHHHHH
Q psy8447 141 NDGFITREEMFQLLRNS 157 (229)
Q Consensus 141 ~~G~I~~~e~~~~l~~~ 157 (229)
+.|.|+.+|+..+...+
T Consensus 1 ~~~~i~~~~~~d~a~rv 17 (33)
T PF09373_consen 1 SSGTISKEEYLDMASRV 17 (33)
T ss_pred CCceecHHHHHHHHHHH
Confidence 35788888888887654
No 210
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=26.38 E-value=94 Score=21.97 Aligned_cols=63 Identities=16% Similarity=0.285 Sum_probs=35.8
Q ss_pred HhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcChHHHH
Q psy8447 136 IYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLE 207 (229)
Q Consensus 136 ~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~~~~~~ 207 (229)
..|... ..++.+|+..++...+... + .+-+.-...++..+.+. ..++-+++.++|..+|.+++
T Consensus 29 ~~d~~~-~~~s~~eL~~~l~~~~~~~------~-~lin~~~~~~k~L~~~~-~~ls~~e~i~ll~~~P~Lik 91 (132)
T PRK13344 29 EQNLGK-EPLTKEEILAILTKTENGI------E-SIVSSKNRYAKALDCDI-EELSVNEVIDLIQENPRILK 91 (132)
T ss_pred EEECCC-CCCCHHHHHHHHHHhCCCH------H-HhhccCcHHHHhCCcch-hcCCHHHHHHHHHhCcccee
Confidence 334333 3468888888887653210 0 00011223455544332 46788999999999998643
No 211
>PF07105 DUF1367: Protein of unknown function (DUF1367); InterPro: IPR009797 This entry is represented by Bacteriophage VT2phi_272, P37. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several highly conserved, hypothetical bacterial and phage proteins of around 200 resides in length. The function of this family is unknown.
Probab=26.02 E-value=3e+02 Score=21.05 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=7.5
Q ss_pred HHHHHHhcCCCCCcccHHH
Q psy8447 131 KFTFLIYDLNNDGFITREE 149 (229)
Q Consensus 131 ~~~F~~~D~~~~G~I~~~e 149 (229)
...|+.+-+.| |.|+..|
T Consensus 55 ~lgFeyW~P~g-g~is~~E 72 (196)
T PF07105_consen 55 NLGFEYWEPTG-GTISPAE 72 (196)
T ss_pred HHHHHHccCCC-CccCHHH
Confidence 33444443332 4444444
No 212
>KOG3442|consensus
Probab=25.83 E-value=1.5e+02 Score=20.85 Aligned_cols=43 Identities=26% Similarity=0.272 Sum_probs=33.4
Q ss_pred CCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcc
Q psy8447 142 DGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKI 190 (229)
Q Consensus 142 ~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~I 190 (229)
.|.||.+|-.++|. ..+..+.+.++...+++|+.-|+...|..
T Consensus 53 ~~~iTlqEa~qILn------V~~~ln~eei~k~yehLFevNdkskGGSF 95 (132)
T KOG3442|consen 53 NGKITLQEAQQILN------VKEPLNREEIEKRYEHLFEVNDKSKGGSF 95 (132)
T ss_pred cccccHHHHhhHhC------CCCCCCHHHHHHHHHHHHhccCcccCcce
Confidence 47799999888873 13355677888899999999998877754
No 213
>TIGR01309 L30P_arch 50S ribosomal protein L30P, archaeal. This model represents the archaeal ribosomal protein similar to longer (~ 250 residue) eukaryotic 60S ribosomal protein L7 and to the much shorter (~ 60 residue) bacterial 50S ribosomal protein L30. Protein naming follows the SwissProt designation as L30P, while the gene symbol rpmD follows TIGR usage.
Probab=25.20 E-value=1.9e+02 Score=21.15 Aligned_cols=48 Identities=21% Similarity=0.221 Sum_probs=25.4
Q ss_pred CCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhc
Q psy8447 142 DGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTD 201 (229)
Q Consensus 142 ~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~ 201 (229)
=|.++.+-++.++..-+.......++++.+++ .-|.++.+|+.+.+..
T Consensus 53 ~ge~~~~tv~~Li~kRG~~~g~~~ltd~~i~e------------~~g~~~iedl~~~i~~ 100 (152)
T TIGR01309 53 WGEIDEDTLELLIRKRGRLVGGDKVTDEYVKE------------VTGYESVDELAKALVE 100 (152)
T ss_pred EecCCHHHHHHHHHHhccccCCCcCCHHHHHH------------HcCCccHHHHHHHHHc
Confidence 35666666666666554332223334332221 1256788888886654
No 214
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=24.95 E-value=1.1e+02 Score=15.50 Aligned_cols=25 Identities=28% Similarity=0.227 Sum_probs=15.4
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHH
Q psy8447 130 IKFTFLIYDLNNDGFITREEMFQLLRNS 157 (229)
Q Consensus 130 ~~~~F~~~D~~~~G~I~~~e~~~~l~~~ 157 (229)
+..+=..++ .|-||.+||...-..+
T Consensus 5 L~~L~~l~~---~G~IseeEy~~~k~~l 29 (31)
T PF09851_consen 5 LEKLKELYD---KGEISEEEYEQKKARL 29 (31)
T ss_pred HHHHHHHHH---cCCCCHHHHHHHHHHH
Confidence 344444444 6888888887765543
No 215
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=24.48 E-value=1.2e+02 Score=20.85 Aligned_cols=29 Identities=10% Similarity=0.200 Sum_probs=20.2
Q ss_pred HHHHcCCCCCCcccHHHHHHHHhcChHHHH
Q psy8447 178 ALRKMDYDKDGKISFQDFQQSVTDEPLLLE 207 (229)
Q Consensus 178 ~~~~~d~~~dg~Is~~ef~~~~~~~~~~~~ 207 (229)
.++....+. ..+|-++..++|..+|.+++
T Consensus 61 ~~r~~~~~~-~~ls~~e~~~ll~~~P~Lik 89 (113)
T cd03033 61 RVKSGEVVP-EALDEEEALALMIADPLLIR 89 (113)
T ss_pred HHHhcCCCc-cCCCHHHHHHHHHhCcceee
Confidence 444443332 45788999999999998754
No 216
>KOG4403|consensus
Probab=24.14 E-value=1.4e+02 Score=25.84 Aligned_cols=28 Identities=29% Similarity=0.272 Sum_probs=14.6
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHH
Q psy8447 129 LIKFTFLIYDLNNDGFITREEMFQLLRN 156 (229)
Q Consensus 129 ~~~~~F~~~D~~~~G~I~~~e~~~~l~~ 156 (229)
.++.+-+..|.|.+|.|+.+|-..+++.
T Consensus 69 Air~iHrqmDDD~nG~Id~~ESdeFlrE 96 (575)
T KOG4403|consen 69 AIRDIHRQMDDDHNGSIDVEESDEFLRE 96 (575)
T ss_pred HHHHHHHhcccccCCCcccccchHHHHH
Confidence 3444445555555555555555555543
No 217
>PRK12559 transcriptional regulator Spx; Provisional
Probab=23.85 E-value=1.2e+02 Score=21.36 Aligned_cols=57 Identities=16% Similarity=0.324 Sum_probs=33.3
Q ss_pred CcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcChHHHH
Q psy8447 143 GFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLE 207 (229)
Q Consensus 143 G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~~~~~~ 207 (229)
..++.+|+..++...+.. ...+-+.-...++..+.+. -.+|-++..++|..+|.+++
T Consensus 35 ~~~s~~el~~~l~~~~~g-------~~~lin~~~~~~k~l~~~~-~~ls~~e~i~ll~~~P~Lik 91 (131)
T PRK12559 35 NSMTVDELKSILRLTEEG-------ATEIISTRSKTFQDLNINI-EELSLNEFYKLIIEHPLMLR 91 (131)
T ss_pred CcCCHHHHHHHHHHcCCC-------HHHHHhcCcHHHHhCCCCc-ccCCHHHHHHHHHhCcceEe
Confidence 346778888777663211 0011111223456555443 35788999999999998644
No 218
>PRK03968 DNA primase large subunit; Validated
Probab=23.78 E-value=4.6e+02 Score=22.37 Aligned_cols=19 Identities=11% Similarity=-0.083 Sum_probs=13.5
Q ss_pred CCCCceeHHHHHHHHHhhc
Q psy8447 104 LCDGVIHLDEWVLGLSCFL 122 (229)
Q Consensus 104 ~~~g~I~~~ef~~~~~~~~ 122 (229)
+|.=.++.++|+..|....
T Consensus 173 nG~VYLdkee~iki~~eaf 191 (399)
T PRK03968 173 NGRVYLRREEFLKLWSKAF 191 (399)
T ss_pred CcEEEecHHHHHHHHHHHH
Confidence 4555778888888877654
No 219
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=23.73 E-value=1.2e+02 Score=20.06 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=3.2
Q ss_pred HHHHHHHHcCCCCCCcccHHHHHHHHhcChHHHHHhcccC
Q psy8447 174 LVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAFGQCL 213 (229)
Q Consensus 174 ~~~~~~~~~d~~~dg~Is~~ef~~~~~~~~~~~~~~~~~~ 213 (229)
++..+......-|.+.|+.+||.-+++++|.-+.=+..++
T Consensus 39 l~~~A~~~a~~rg~~~i~~eDl~F~lR~D~~Kl~Rl~~~L 78 (93)
T PF02269_consen 39 LCQEAMEVAQRRGSKKIKVEDLLFLLRKDPKKLARLRELL 78 (93)
T ss_dssp HHHHHHC---------------------------------
T ss_pred HHHHHHHHHhccccCcCcHHHHHHHHhcCHHHHHHHHHHH
Confidence 3444445555556789999999999999997544444444
No 220
>PF09824 ArsR: ArsR transcriptional regulator; InterPro: IPR014517 Members of this family of archaeal proteins are conserved transcriptional regulators belonging to the ArsR family.
Probab=23.63 E-value=3.1e+02 Score=20.24 Aligned_cols=76 Identities=17% Similarity=0.310 Sum_probs=54.5
Q ss_pred ChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcChH
Q psy8447 125 TNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPL 204 (229)
Q Consensus 125 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~~~ 204 (229)
.++.+.+..|..+-.| =..+.+|+..++..... +++.+++.++.+-+.+- .|.+|..+..+-+...|.
T Consensus 69 kPeKEYhtsYs~vqaN--Fqcs~~DLsdii~i~f~-------~deel~~~~e~i~~~v~---~Gn~Sl~~lsr~l~~sp~ 136 (160)
T PF09824_consen 69 KPEKEYHTSYSKVQAN--FQCSMEDLSDIIYIAFM-------SDEELRDYVEKIEKEVE---AGNTSLSDLSRKLGISPV 136 (160)
T ss_pred CchHHHHhhHhheeee--eEeeHHHHHHHHheeec-------CHHHHHHHHHHHHHHHH---cCCCcHHHHHHHhCCCHH
Confidence 3455666666666443 45688888888864322 45577777888887774 388999999999999999
Q ss_pred HHHHhccc
Q psy8447 205 LLEAFGQC 212 (229)
Q Consensus 205 ~~~~~~~~ 212 (229)
+++.+..-
T Consensus 137 firglAKR 144 (160)
T PF09824_consen 137 FIRGLAKR 144 (160)
T ss_pred HHHHHHHh
Confidence 88876543
No 221
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=23.01 E-value=1.7e+02 Score=20.59 Aligned_cols=57 Identities=25% Similarity=0.346 Sum_probs=31.8
Q ss_pred CcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcChHHHH
Q psy8447 143 GFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLE 207 (229)
Q Consensus 143 G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~~~~~~ 207 (229)
...+.+++..++...+.. .+.+-+.-...++....+. -.+|-+|+.++|..+|.+++
T Consensus 35 ~~~~~~eL~~~l~~~~~g-------~~~lin~~~~~~k~l~~~~-~~ls~~e~i~ll~~~p~Lik 91 (131)
T PRK01655 35 SPLTIDEIKQILRMTEDG-------TDEIISTRSKVFQKLNVDV-ESLSLQDLIKLISDNPGLLR 91 (131)
T ss_pred ChhhHHHHHHHHHHhcCC-------HHHHHhcCcHHHHhCCCCc-ccCCHHHHHHHHHhCcceEe
Confidence 344666666666654210 0011111223455554443 35788999999999998643
No 222
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=22.64 E-value=2.2e+02 Score=18.86 Aligned_cols=56 Identities=16% Similarity=0.272 Sum_probs=35.7
Q ss_pred CCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcChHHHHHhc
Q psy8447 141 NDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAFG 210 (229)
Q Consensus 141 ~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~~~~~~~~~~~ 210 (229)
++|.||.++...+-..- .-.+.+..++... ...|.--|..|+.++...|-+.+.+.
T Consensus 32 ~~gIlT~~~~e~I~a~~------------T~~~k~~~LLdiL--p~RG~~AF~~F~~aL~e~~~l~~~l~ 87 (94)
T cd08327 32 QEGILTESHVEEIESQT------------TSRRKTMKLLDIL--PSRGPKAFHAFLDSLEEFPWVRDKLL 87 (94)
T ss_pred hCCCCCHHHHHHHHccC------------ChHHHHHHHHHHH--HhhChhHHHHHHHHHHHHHHHHHHHH
Confidence 46788888766654311 1122355555543 46788899999999987666655543
No 223
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=22.56 E-value=3.1e+02 Score=19.98 Aligned_cols=10 Identities=20% Similarity=0.471 Sum_probs=5.0
Q ss_pred HHHHHHhhcC
Q psy8447 23 KIFKKLLNSS 32 (229)
Q Consensus 23 ~~f~~l~~~~ 32 (229)
++|+...+++
T Consensus 18 rllYD~lP~~ 27 (175)
T PF04876_consen 18 RLLYDMLPSK 27 (175)
T ss_pred HHHHHhchhh
Confidence 4455555544
No 224
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=22.45 E-value=1.5e+02 Score=20.75 Aligned_cols=29 Identities=14% Similarity=0.257 Sum_probs=20.0
Q ss_pred HHHHcCCCCCCcccHHHHHHHHhcChHHHH
Q psy8447 178 ALRKMDYDKDGKISFQDFQQSVTDEPLLLE 207 (229)
Q Consensus 178 ~~~~~d~~~dg~Is~~ef~~~~~~~~~~~~ 207 (229)
.++..+.+. ..++-++..++|..+|.+++
T Consensus 62 ~~r~l~~~~-~~ls~~e~i~lm~~~P~LIK 90 (126)
T TIGR01616 62 RVKSGEVNP-DSIDEASALALMVSDPLLIR 90 (126)
T ss_pred HhhhCCCCc-ccCCHHHHHHHHHhCcCeEe
Confidence 455444332 45788999999999998644
No 225
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=22.28 E-value=2e+02 Score=19.91 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=13.6
Q ss_pred HHHHHHHcCCCCCCcccHHHHHHHH
Q psy8447 175 VELALRKMDYDKDGKISFQDFQQSV 199 (229)
Q Consensus 175 ~~~~~~~~d~~~dg~Is~~ef~~~~ 199 (229)
...+++... +|.||.+|=.+.+
T Consensus 91 ~~~IL~~L~---~GeIs~eeA~~~L 112 (113)
T PF09862_consen 91 RKEILDKLE---KGEISVEEALEIL 112 (113)
T ss_pred HHHHHHHHH---cCCCCHHHHHHHh
Confidence 444555553 6788888765543
No 226
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=21.81 E-value=1.5e+02 Score=24.71 Aligned_cols=43 Identities=33% Similarity=0.383 Sum_probs=24.6
Q ss_pred CCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHH
Q psy8447 142 DGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSV 199 (229)
Q Consensus 142 ~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~ 199 (229)
.|.||++|-...++..-. . ..++.++.+++.++ ||-+||..++
T Consensus 300 ~G~itReeal~~v~~~d~-----~----~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 300 SGRITREEAIELVKEYDG-----E----FPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred cCCCCHHHHHHHHHHhcc-----c----ccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 577777777777665311 1 11123556666665 6667776654
No 227
>PF03556 Cullin_binding: Cullin binding; InterPro: IPR005176 The eukaryotic defective in cullin neddylation (DCN) protein family, may contribute to neddylation of cullin components of SCF-type E3 ubiquitin ligase complexes. These multi-protein complexes are required for polyubiquitination and subsequent degradation of target proteins by the 26S proteasome []. Proteins in the DCN family include: Yeast DCN1. Vertebrate DCN1-like protein 1. Vertebrate DCN1-like protein 2. Vertebrate DCN1-like protein 4. This entry represents a domain found within DCN family proteins. Its function is unknown but it has been suggested that it has the features of a basic helix-loop-helix leucine zipper (bHLH-ZIP) domain [].It is often found in association with a UBA-like domain (IPR009060 from INTERPRO).; PDB: 3TDI_A 2IS9_A 3O6B_E 3O2P_A 3BQ3_A 3TDZ_A 3TDU_B.
Probab=21.70 E-value=2.8e+02 Score=19.13 Aligned_cols=87 Identities=13% Similarity=0.048 Sum_probs=49.8
Q ss_pred HHHHccCCCCceeHHHHHHHHHhhccCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHH
Q psy8447 98 FCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVEL 177 (229)
Q Consensus 98 f~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 177 (229)
|...-..+...|+.+-=+.++..+..+.....+....+.+...+...||++....++.-... +..
T Consensus 30 F~~~~~~~qr~l~~e~Ai~~W~llf~~~~~~~l~~w~~Fl~~~~~k~IskD~W~~~l~F~~~---------------~~~ 94 (117)
T PF03556_consen 30 FDFAREEGQRSLPLETAIAYWRLLFSGRFFPLLDSWIEFLEEKYKKAISKDTWNQFLDFFKT---------------VDE 94 (117)
T ss_dssp HHHHS-TT-SSEEHHHHHHHHHHHTTTTSSCCHHHHHHHHHHCT-SEEEHHHHHHHHHHHHH----------------HC
T ss_pred HHHhCCcccCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcCCcCcChhHHHHHHHHHHh---------------cCc
Confidence 33333455678888888888888776543345555666666667778999988887753211 122
Q ss_pred HHHHcCCCCCCcccHHHHHHHH
Q psy8447 178 ALRKMDYDKDGKISFQDFQQSV 199 (229)
Q Consensus 178 ~~~~~d~~~dg~Is~~ef~~~~ 199 (229)
-+..+|.++.=-+-++||+.++
T Consensus 95 dls~Yde~~AWP~liDeFVe~~ 116 (117)
T PF03556_consen 95 DLSNYDEEGAWPSLIDEFVEWL 116 (117)
T ss_dssp CHCC--TTSSS-HHHHHHHHHH
T ss_pred cccCCCCCCCCcHHHHHHHHHh
Confidence 3444443333347778887765
No 228
>KOG0039|consensus
Probab=21.61 E-value=2.5e+02 Score=25.94 Aligned_cols=78 Identities=18% Similarity=0.239 Sum_probs=56.7
Q ss_pred CCHHHHHHHHhhhcCCCcHHHHHHHHHHHHccCCCCceeHHHHHHHHHhhcc--------CChHHHHHHHHHHhcCCCCC
Q psy8447 72 LDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLR--------GTNEELIKFTFLIYDLNNDG 143 (229)
Q Consensus 72 i~~~ef~~~l~~~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~~~~~~~--------~~~~~~~~~~F~~~D~~~~G 143 (229)
++..++. ....+.++-++.+|...|. .+|.++-+++..++..... ....+....+++..|.++.|
T Consensus 4 ~~~~~~~------~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (646)
T KOG0039|consen 4 ISFQELK------ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKG 76 (646)
T ss_pred cchhhhc------ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccc
Confidence 4555555 2235556667888888888 8899999998887776543 22334566789999999999
Q ss_pred cccHHHHHHHHHH
Q psy8447 144 FITREEMFQLLRN 156 (229)
Q Consensus 144 ~I~~~e~~~~l~~ 156 (229)
++..+++..++..
T Consensus 77 y~~~~~~~~ll~~ 89 (646)
T KOG0039|consen 77 YITNEDLEILLLQ 89 (646)
T ss_pred eeeecchhHHHHh
Confidence 9999988887764
No 229
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=21.60 E-value=2.3e+02 Score=18.15 Aligned_cols=45 Identities=9% Similarity=0.101 Sum_probs=35.8
Q ss_pred HHHHHHHHcCCCCCCcccHHHHHHHHhcChHHHHHhcccCCChHHHHH
Q psy8447 174 LVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAFGQCLPSDAARQS 221 (229)
Q Consensus 174 ~~~~~~~~~d~~~dg~Is~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (229)
.++.++..+. +|.++.++-...+...-.++..++..|..++..-.
T Consensus 15 ~LEeIV~~LE---~~~l~Lees~~lyeeG~~L~k~C~~~L~~ae~kI~ 59 (80)
T PRK14067 15 RLQEIVDALE---GGDLPLEESVALYKEGLGLARACREQLAKARNEIR 59 (80)
T ss_pred HHHHHHHHHH---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666777774 67799999999999988898888888877776654
No 230
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=21.44 E-value=1.7e+02 Score=18.62 Aligned_cols=15 Identities=27% Similarity=0.556 Sum_probs=9.3
Q ss_pred CCCcccHHHHHHHHH
Q psy8447 141 NDGFITREEMFQLLR 155 (229)
Q Consensus 141 ~~G~I~~~e~~~~l~ 155 (229)
..|+||+.|+..+|.
T Consensus 18 ~~G~lT~~eI~~~L~ 32 (82)
T PF03979_consen 18 KKGYLTYDEINDALP 32 (82)
T ss_dssp HHSS-BHHHHHHH-S
T ss_pred hcCcCCHHHHHHHcC
Confidence 467788888777764
No 231
>PF12588 PSDC: Phophatidylserine decarboxylase ; InterPro: IPR022237 This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF02666 from PFAM. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=21.18 E-value=3.3e+02 Score=19.66 Aligned_cols=54 Identities=13% Similarity=0.151 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHH----cCCCCC--CcccHHHHHHHH----hcChHHHH--------------HhcccCCChHHHHHHH
Q psy8447 170 GVRDLVELALRK----MDYDKD--GKISFQDFQQSV----TDEPLLLE--------------AFGQCLPSDAARQSFL 223 (229)
Q Consensus 170 ~~~~~~~~~~~~----~d~~~d--g~Is~~ef~~~~----~~~~~~~~--------------~~~~~~~~~~~~~~~~ 223 (229)
.+.-.+.++|.+ .|+.+. +.=+|++++.++ +.-|.+.. +|.+...++.|.+-|+
T Consensus 17 ~l~ml~~~Mf~q~~~~~~p~g~~~~i~~~~~mL~~ln~i~t~AP~~~~~~~~~glvG~P~naiLdwpM~T~sG~a~F~ 94 (141)
T PF12588_consen 17 RLYMLFTQMFDQPPYNADPTGNPPQIRDYDEMLQLLNHIMTTAPEFSDANEPVGLVGFPMNAILDWPMGTPSGYAFFL 94 (141)
T ss_pred HHHHHHHHHHhCcccccCCCCCccccccHHHHHHHHHHHHhhCCcccccCCCCCccccChHHHHHhhccChHHHHHHc
Confidence 344457778877 333332 224788887755 34555555 5556666666655544
No 232
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=21.15 E-value=2e+02 Score=18.37 Aligned_cols=53 Identities=19% Similarity=0.213 Sum_probs=33.5
Q ss_pred CCCcccHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHh-cChHHHH
Q psy8447 141 NDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVT-DEPLLLE 207 (229)
Q Consensus 141 ~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~Is~~ef~~~~~-~~~~~~~ 207 (229)
+.|-|+.++...+...- +..+.++.++... ...|...+.-|.+++. ..|.+.+
T Consensus 26 ~~~Vit~e~~~~I~a~~------------T~~~kar~Lld~l--~~kG~~A~~~F~~~L~e~~p~L~~ 79 (82)
T cd08330 26 GKKVITQEQYSEVRAEK------------TNQEKMRKLFSFV--RSWGASCKDIFYQILREEEPYLVE 79 (82)
T ss_pred HCCCCCHHHHHHHHcCC------------CcHHHHHHHHHHH--HccCHHHHHHHHHHHHHhChHHHh
Confidence 45778888766665321 1223466666655 3478888999999887 5565544
Done!