RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8447
(229 letters)
>gnl|CDD|238008 cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily
of calcium sensors and calcium signal modulators; most
examples in this alignment model have 2 active canonical
EF hands. Ca2+ binding induces a conformational change
in the EF-hand motif, leading to the activation or
inactivation of target proteins. EF-hands tend to occur
in pairs or higher copy numbers.
Length = 63
Score = 54.5 bits (132), Expect = 2e-10
Identities = 17/68 (25%), Positives = 37/68 (54%), Gaps = 9/68 (13%)
Query: 130 IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGK 189
++ F ++D + DG I+ +E+ L++ ++E ++ +R++D D DGK
Sbjct: 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEE---------IDEMIREVDKDGDGK 52
Query: 190 ISFQDFQQ 197
I F++F +
Sbjct: 53 IDFEEFLE 60
Score = 41.4 bits (98), Expect = 1e-05
Identities = 20/61 (32%), Positives = 25/61 (40%)
Query: 95 ERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLL 154
F FD+ DG I DE L G +EE I D + DG I EE +L+
Sbjct: 3 REAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62
Query: 155 R 155
Sbjct: 63 A 63
>gnl|CDD|222177 pfam13499, EF_hand_5, EF-hand domain pair.
Length = 60
Score = 53.1 bits (128), Expect = 6e-10
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 136 IYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDF 195
+ D + DG+I EE+ +LL+ + DE V +L+E ++D D DG+ISF++F
Sbjct: 2 LLDKDGDGYIDVEELRKLLKAL-----GLKLTDEEVEELIEADFNEIDKDGDGRISFEEF 56
Query: 196 QQ 197
+
Sbjct: 57 LE 58
Score = 33.9 bits (78), Expect = 0.006
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 100 AFDRLCDGVIHLDEWVLGLSCFL----RGTNEELIKFTFLIYDLNNDGFITREEMFQLL 154
D+ DG I ++E L EELI+ F D + DG I+ EE + +
Sbjct: 2 LLDKDGDGYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEEFLEAM 60
>gnl|CDD|227455 COG5126, FRQ1, Ca2+-binding protein (EF-Hand superfamily) [Signal
transduction mechanisms / Cytoskeleton / Cell division
and chromosome partitioning / General function
prediction only].
Length = 160
Score = 55.4 bits (134), Expect = 1e-09
Identities = 29/114 (25%), Positives = 61/114 (53%), Gaps = 11/114 (9%)
Query: 93 LMERIFCAFDRLCDGVIHLDEWVLGLSCFL-RGTNEELIKFTFLIYDLNNDGFITREEMF 151
+ ++F D + + E++ +S L RG EE ++ F ++D ++DG+I+ E+
Sbjct: 57 EINKLFEEIDAGNET-VDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELR 115
Query: 152 QLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLL 205
++L++ + DE V L L++ D D DG+I +++F++ + D P +
Sbjct: 116 RVLKSL-----GERLSDEEVEKL----LKEYDEDGDGEIDYEEFKKLIKDSPTI 160
>gnl|CDD|185504 PTZ00184, PTZ00184, calmodulin; Provisional.
Length = 149
Score = 39.4 bits (92), Expect = 4e-04
Identities = 25/91 (27%), Positives = 51/91 (56%), Gaps = 10/91 (10%)
Query: 106 DGVIHLDEWVLGLSCFLRGT-NEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQD 164
+G I E++ ++ ++ T +EE IK F ++D + +GFI+ E LR+ + + +
Sbjct: 61 NGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAE----LRHVMTNLGEK 116
Query: 165 EDPDEGVRDLVELALRKMDYDKDGKISFQDF 195
+E V+ +R+ D D DG+I++++F
Sbjct: 117 LTDEE-----VDEMIREADVDGDGQINYEEF 142
Score = 29.7 bits (67), Expect = 0.77
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 11/73 (15%)
Query: 125 TNEELIKF--TFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKM 182
T E++ +F F ++D + DG IT +E+ ++R SL +P + + + + ++
Sbjct: 6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMR-SLGQNPTEAELQDMINEV-------- 56
Query: 183 DYDKDGKISFQDF 195
D D +G I F +F
Sbjct: 57 DADGNGTIDFPEF 69
>gnl|CDD|205583 pfam13405, EF_hand_4, EF-hand domain.
Length = 30
Score = 32.6 bits (75), Expect = 0.008
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 130 IKFTFLIYDLNNDGFITREEMFQLLRN 156
++ F ++D + DG+I+ EE+ + LR+
Sbjct: 2 LREAFKLFDKDGDGYISAEELRKALRS 28
Score = 25.6 bits (57), Expect = 2.5
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 178 ALRKMDYDKDGKISFQDFQQ 197
A + D D DG IS ++ ++
Sbjct: 5 AFKLFDKDGDGYISAEELRK 24
>gnl|CDD|183426 PRK12309, PRK12309, transaldolase/EF-hand domain-containing
protein; Provisional.
Length = 391
Score = 36.3 bits (84), Expect = 0.009
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 22/61 (36%)
Query: 134 FLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQ 193
F +YDL+ DGFITREE D V AL D + DGKI+ +
Sbjct: 340 FRLYDLDGDGFITREEWLG-------------------SDAVFDAL---DLNHDGKITPE 377
Query: 194 D 194
+
Sbjct: 378 E 378
Score = 30.9 bits (70), Expect = 0.48
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 13/56 (23%)
Query: 95 ERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEM 150
+ IF +D DG I +EW+ G++ F DLN+DG IT EEM
Sbjct: 337 QEIFRLYDLDGDGFITREEWL--------GSDA-----VFDALDLNHDGKITPEEM 379
>gnl|CDD|200946 pfam00036, efhand, EF hand. The EF-hands can be divided into two
classes: signaling proteins and buffering/transport
proteins. The first group is the largest and includes
the most well-known members of the family such as
calmodulin, troponin C and S100B. These proteins
typically undergo a calcium-dependent conformational
change which opens a target binding site. The latter
group is represented by calbindin D9k and do not undergo
calcium dependent conformational changes.
Length = 29
Score = 31.7 bits (73), Expect = 0.018
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 130 IKFTFLIYDLNNDGFITREEMFQLLRN 156
+K F +D + DG I+ EE +LL+
Sbjct: 2 LKEAFKEFDKDGDGKISFEEFKELLKK 28
Score = 29.7 bits (68), Expect = 0.10
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 175 VELALRKMDYDKDGKISFQDFQQ 197
++ A ++ D D DGKISF++F++
Sbjct: 2 LKEAFKEFDKDGDGKISFEEFKE 24
>gnl|CDD|197492 smart00054, EFh, EF-hand, calcium binding motif. EF-hands are
calcium-binding motifs that occur at least in pairs.
Links between disease states and genes encoding
EF-hands, particularly the S100 subclass, are emerging.
Each motif consists of a 12 residue loop flanked on
either side by a 12 residue alpha-helix. EF-hands
undergo a conformational change unpon binding calcium
ions.
Length = 29
Score = 31.2 bits (72), Expect = 0.030
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 130 IKFTFLIYDLNNDGFITREEMFQLLRN 156
+K F ++D + DG I EE LL+
Sbjct: 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28
Score = 29.7 bits (68), Expect = 0.11
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 178 ALRKMDYDKDGKISFQDFQQ 197
A R D D DGKI F++F+
Sbjct: 5 AFRLFDKDGDGKIDFEEFKD 24
>gnl|CDD|185503 PTZ00183, PTZ00183, centrin; Provisional.
Length = 158
Score = 33.5 bits (77), Expect = 0.036
Identities = 35/154 (22%), Positives = 70/154 (45%), Gaps = 20/154 (12%)
Query: 59 ERYKGFSPFSFQGLDRVVFRELLHNT----FDLVTEEILMERIFCAFDRLCDGVIHLDEW 114
E + F F G + +EL F+ EEI +++ D+ G I +E+
Sbjct: 18 EIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEI--KQMIADVDKDGSGKIDFEEF 75
Query: 115 VLGLSCFL--RGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDED-PDEGV 171
+ ++ L R EE++K F ++D + G I+ + L+ ++ E DE +
Sbjct: 76 LDIMTKKLGERDPREEILK-AFRLFDDDKTGKIS----LKNLKR--VAKELGETITDEEL 128
Query: 172 RDLVELALRKMDYDKDGKISFQDFQQSVTDEPLL 205
+++++ A D + DG+IS ++F + + L
Sbjct: 129 QEMIDEA----DRNGDGEISEEEFYRIMKKTNLF 158
>gnl|CDD|205383 pfam13202, EF_hand_3, EF hand.
Length = 25
Score = 30.3 bits (70), Expect = 0.048
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 133 TFLIYDLNNDGFITREEMFQLL 154
F +D N DG I++EE+ +LL
Sbjct: 4 LFRQFDTNGDGKISKEELKRLL 25
Score = 29.9 bits (69), Expect = 0.071
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 178 ALRKMDYDKDGKISFQDFQQ 197
R+ D + DGKIS ++ ++
Sbjct: 4 LFRQFDTNGDGKISKEELKR 23
>gnl|CDD|215520 PLN02964, PLN02964, phosphatidylserine decarboxylase.
Length = 644
Score = 33.3 bits (76), Expect = 0.094
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 165 EDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAFG 210
EDP E R L +DYD+DG++SF +F L++AFG
Sbjct: 171 EDPVETERSFARRILAIVDYDEDGQLSFSEFSD-------LIKAFG 209
>gnl|CDD|222407 pfam13833, EF_hand_6, EF-hand domain pair.
Length = 53
Score = 29.8 bits (68), Expect = 0.16
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 142 DGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTD 201
G ITREE+ + L IS ++E V++ R+ D D DGKISF++F +
Sbjct: 2 KGLITREELKRALALLGISLSEEE---------VDILFREFDTDGDGKISFEEFCVLLQR 52
Query: 202 E 202
Sbjct: 53 L 53
>gnl|CDD|133450 cd05211, NAD_bind_Glu_Leu_Phe_Val, NAD(P) binding domain of
glutamate dehydrogenase, leucine dehydrogenase,
phenylalanine dehydrogenase, and valine dehydrogenase.
Amino acid dehydrogenase (DH) is a widely distributed
family of enzymes that catalyzes the oxidative
deamination of an amino acid to its keto acid and
ammonia with concomitant reduction of NAD(P)+. This
subfamily includes glutamate, leucine, phenylalanine,
and valine DHs. Glutamate DH is a multi-domain enzyme
that catalyzes the reaction from glutamate to
2-oxyoglutarate and ammonia in the presence of NAD or
NADP. It is present in all organisms. Enzymes involved
in ammonia assimilation are typically NADP+-dependent,
while those involved in glutamate catabolism are
generally NAD+-dependent. As in other NAD+-dependent
DHs, monomers in this family have 2 domains separated by
a deep cleft. Here the c-terminal domain contains a
modified NAD-binding Rossmann fold with 7 rather than
the usual 6 beta strands and one strand anti-parrallel
to the others. Amino acid DH-like NAD(P)-binding domains
are members of the Rossmann fold superfamily and include
glutamate, leucine, and phenylalanine DHs, methylene
tetrahydrofolate DH, methylene-tetrahydromethanopterin
DH, methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+ as
a cofactor. The NAD(P)-binding Rossmann fold superfamily
includes a wide variety of protein families including
NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 217
Score = 31.8 bits (72), Expect = 0.21
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 90 EEILMER-IFCAFDRLCD--GVIHL-DEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGF 144
IL ER I A D + + GVI EWV L E K ++ D++N F
Sbjct: 136 LRILHERGIVVAPDIVANAGGVIVSYFEWVQNLQRLSWDAEEVRSKLEQVMTDIHNGVF 194
>gnl|CDD|238131 cd00213, S-100, S-100: S-100 domain, which represents the largest
family within the superfamily of proteins carrying the
Ca-binding EF-hand motif. Note that this S-100 hierarchy
contains only S-100 EF-hand domains, other EF-hands have
been modeled separately. S100 proteins are expressed
exclusively in vertebrates, and are implicated in
intracellular and extracellular regulatory activities.
Intracellularly, S100 proteins act as Ca-signaling or
Ca-buffering proteins. The most unusual characteristic
of certain S100 proteins is their occurrence in
extracellular space, where they act in a cytokine-like
manner through RAGE, the receptor for advanced glycation
products. Structural data suggest that many S100 members
exist within cells as homo- or heterodimers and even
oligomers; oligomerization contributes to their
functional diversification. Upon binding calcium, most
S100 proteins change conformation to a more open
structure exposing a hydrophobic cleft. This hydrophobic
surface represents the interaction site of S100 proteins
with their target proteins. There is experimental
evidence showing that many S100 proteins have multiple
binding partners with diverse mode of interaction with
different targets. In addition to S100 proteins (such as
S100A1,-3,-4,-6,-7,-10,-11,and -13), this group includes
the ''fused'' gene family, a group of calcium binding
S100-related proteins. The ''fused'' gene family
includes multifunctional epidermal differentiation
proteins - profilaggrin, trichohyalin, repetin,
hornerin, and cornulin; functionally these proteins are
associated with keratin intermediate filaments and
partially crosslinked to the cell envelope. These
''fused'' gene proteins contain N-terminal sequence with
two Ca-binding EF-hands motif, which may be associated
with calcium signaling in epidermal cells and
autoprocessing in a calcium-dependent manner. In
contrast to S100 proteins, "fused" gene family proteins
contain an extraordinary high number of almost perfect
peptide repeats with regular array of polar and charged
residues similar to many known cell envelope proteins.
Length = 88
Score = 29.8 bits (68), Expect = 0.26
Identities = 14/58 (24%), Positives = 32/58 (55%), Gaps = 10/58 (17%)
Query: 141 NDGFITREEMFQLLRNSL---ISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDF 195
+ ++++E+ +LL L + + +D + V+ ++ +D +KDGK+ FQ+F
Sbjct: 23 DKDTLSKKELKELLETELPNFLKNQKDPE-------AVDKIMKDLDVNKDGKVDFQEF 73
>gnl|CDD|150423 pfam09748, Med10, Transcription factor subunit Med10 of Mediator
complex. Med10 is one of the protein subunits of the
Mediator complex, tethered to Rgr1 protein. The Mediator
complex is required for the transcription of most RNA
polymerase II (Pol II)-transcribed genes. Med10
specifically mediates basal-level HIS4 transcription via
Gcn4, and, additionally, there is a putative requirement
for Med10 in Bas2-mediated transcription. Med10 is part
of the middle region of Mediator.
Length = 120
Score = 29.9 bits (68), Expect = 0.44
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 8/58 (13%)
Query: 163 QDEDPDEGVRDLVELALRKMDYDKDGKI-SFQDFQQSVTDEPLLLEAFGQCLPSDAAR 219
+PD R+ VEL LRK Y K GK+ +F+ F+ L E + P A
Sbjct: 66 DGRNPDLYTREFVELVLRKNQYVK-GKMHAFKKFRDV------LAEELSEAFPELVAE 116
>gnl|CDD|238083 cd00143, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic
domain; The protein architecture and deduced catalytic
mechanism of PP2C phosphatases are similar to the PP1,
PP2A, PP2B family of protein Ser/Thr phosphatases, with
which PP2C shares no sequence similarity.
Length = 254
Score = 30.8 bits (70), Expect = 0.52
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 9/51 (17%)
Query: 134 FLIYDLNNDG---FITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRK 181
FLI L +DG ++ +E ++R S ED E ++LV+LALR+
Sbjct: 197 FLI--LASDGLWDVLSNQEAVDIVR----SELAKEDLQEAAQELVDLALRR 241
>gnl|CDD|238255 cd00453, FTBP_aldolase_II, Fructose/tagarose-bisphosphate aldolase
class II. This family includes fructose-1,6-bisphosphate
(FBP) and tagarose 1,6-bisphosphate (TBP) aldolases.
FBP-aldolase is homodimeric and used in gluconeogenesis
and glycolysis; the enzyme controls the condensation of
dihydroxyacetone phosphate with
glyceraldehyde-3-phosphate to yield
fructose-1,6-bisphosphate. TBP-aldolase is tetrameric
and produces tagarose-1,6-bisphosphate. There is an
absolute requirement for a divalent metal ion, usually
zinc, and in addition the enzymes are activated by
monovalent cations such as Na+. Although structurally
similar, the class I aldolases use a different mechanism
and are believed to have an independent evolutionary
origin.
Length = 340
Score = 30.9 bits (69), Expect = 0.55
Identities = 7/35 (20%), Positives = 15/35 (42%)
Query: 158 LISHPQDEDPDEGVRDLVELALRKMDYDKDGKISF 192
+ H + ++D V + KM+ D D + +
Sbjct: 245 FVFHGGSGSTAQEIKDSVSYGVVKMNIDTDTQWAT 279
>gnl|CDD|223379 COG0302, FolE, GTP cyclohydrolase I [Coenzyme metabolism].
Length = 195
Score = 29.1 bits (66), Expect = 1.2
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 18/82 (21%)
Query: 54 PSNVTERYKGFSPFSFQGLDRVVFRELLHNTFDLVTEEILMER-IFCAFDRLC------- 105
P V + Y+ F G D +L TF+ +E+++ + I F LC
Sbjct: 39 PKRVAKAYR----ELFSGYDEDPAEIVLEATFEEDHDEMVLVKDI--EFYSLCEHHLLPF 92
Query: 106 DGVIHL----DEWVLGLSCFLR 123
G H+ D V+GLS R
Sbjct: 93 FGKAHVAYIPDGKVIGLSKIAR 114
>gnl|CDD|240152 cd05025, S-100A1, S-100A1: S-100A1 domain found in proteins similar
to S100A1. S100A1 is a calcium-binding protein belonging
to a large S100 vertebrate-specific protein family
within the EF-hand superfamily of calcium-binding
proteins. Note that the S-100 hierarchy, to which this
S-100A1 group belongs, contains only S-100 EF-hand
domains, other EF-hands have been modeled separately. As
is the case with many other members of S100 protein
family, S100A1 is implicated in intracellular and
extracellular regulatory activities, including
interaction with myosin-associated twitchin kinase,
actin-capping protein CapZ, sinapsin I, and tubulin.
Structural data suggests that S100A1 proteins exist
within cells as antiparallel homodimers, while
heterodimers with S100A4 and S100B also has been
reported. Upon binding calcium S100A1 changes
conformation to expose a hydrophobic cleft which is the
interaction site of S100A1 with its more that 20 known
target proteins.
Length = 92
Score = 27.2 bits (60), Expect = 2.6
Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 145 ITREEMFQLLRNSLISH-PQDEDPDEGVRDLVELALRKMDYDKDGKISFQDF 195
++++E+ LL+ L +D D V+ ++++D + DG++ FQ+F
Sbjct: 28 LSKKELKDLLQTELSDFLDAQKDAD-----AVDKIMKELDENGDGEVDFQEF 74
>gnl|CDD|183711 PRK12738, kbaY, tagatose-bisphosphate aldolase; Reviewed.
Length = 286
Score = 28.5 bits (63), Expect = 2.8
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 149 EMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQD 194
E+ +++ L+ H + PDE VR +EL + K++ + KI+F
Sbjct: 196 EIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAFAG 241
>gnl|CDD|200963 pfam00056, Ldh_1_N, lactate/malate dehydrogenase, NAD binding
domain. L-lactate dehydrogenases are metabolic enzymes
which catalyze the conversion of L-lactate to pyruvate,
the last step in anaerobic glycolysis.
L-2-hydroxyisocaproate dehydrogenases are also members
of the family. Malate dehydrogenases catalyze the
interconversion of malate to oxaloacetate. The enzyme
participates in the citric acid cycle. L-lactate
dehydrogenase is also found as a lens crystallin in bird
and crocodile eyes. N-terminus (this family) is a
Rossmann NAD-binding fold. C-terminus is an unusual
alpha+beta fold.
Length = 142
Score = 27.5 bits (62), Expect = 3.5
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 9/44 (20%)
Query: 23 KIFK----KLLNSSSNAGV-----PISTSTPVVVQVSGLPPSNV 57
IFK + S+ +A V P+ T + +VSGLPP V
Sbjct: 96 GIFKDIVPAIAKSAPDAIVLVVSNPVDILTYIAWKVSGLPPERV 139
>gnl|CDD|201806 pfam01457, Peptidase_M8, Leishmanolysin.
Length = 521
Score = 28.2 bits (63), Expect = 4.0
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 7/37 (18%)
Query: 46 VVQVSGLPPSNVTERYKGFSPFSFQGLDRVVFRELLH 82
V V +P +N+T RY Q + RVV E+ H
Sbjct: 191 AVGVINIPAANITSRY-------DQLVTRVVTHEIAH 220
>gnl|CDD|236397 PRK09182, PRK09182, DNA polymerase III subunit epsilon; Validated.
Length = 294
Score = 28.0 bits (63), Expect = 4.3
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 13/43 (30%)
Query: 160 SHPQDEDPDEGVRDLVELALRKMDYDKDGKI-----SFQDFQQ 197
+DE ++E+ + +YD DG+I +F QQ
Sbjct: 50 DPRKDE--------IIEIGMVAFEYDDDGRIGDVLDTFGGLQQ 84
>gnl|CDD|237224 PRK12842, PRK12842, putative succinate dehydrogenase; Reviewed.
Length = 574
Score = 28.1 bits (63), Expect = 4.9
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 27 KLLNSSSNAGVPISTSTPV 45
+L S+ + G+PI T TP
Sbjct: 219 RLAKSALDLGIPILTGTPA 237
>gnl|CDD|237235 PRK12857, PRK12857, fructose-1,6-bisphosphate aldolase; Reviewed.
Length = 284
Score = 27.4 bits (61), Expect = 6.1
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 152 QLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISF 192
+L+ ++ H PDE +R + L +RK++ D + + +F
Sbjct: 199 ELVNIPIVLHGSSGVPDEAIRKAISLGVRKVNIDTNIREAF 239
>gnl|CDD|223598 COG0524, RbsK, Sugar kinases, ribokinase family [Carbohydrate
transport and metabolism].
Length = 311
Score = 27.5 bits (61), Expect = 6.4
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 9/64 (14%)
Query: 133 TFLIYDLNNDGFITREEM----FQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDG 188
TF+ Y +T E++ IS Q E P E + +ELA
Sbjct: 105 TFVFYRGAAALLLTPEDLDEDELAGADVLHISGIQLEIPPEALLAALELAK-----AAGV 159
Query: 189 KISF 192
+SF
Sbjct: 160 TVSF 163
>gnl|CDD|234096 TIGR03031, cas_csx12, CRISPR-associated protein Cas9/Csx12, subtype
II-B/NMENI. Members of this family of CRISPR-associated
(cas) protein are found, so far, in CRISPR/cas loci in
Wolinella succinogenes DSM 1740, Legionella pneumophila
str. Paris, and Francisella tularensis, where the last
probably is an example of a degenerate CRISPR locus,
having neither repeats nor a functional Cas1. The
characteristic repeat length is 37 base pairs and period
is about 72. One region of this large protein shows
sequence similarity to pfam01844, HNH endonuclease
[Mobile and extrachromosomal element functions, Other].
Length = 802
Score = 27.6 bits (61), Expect = 6.5
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 2/72 (2%)
Query: 132 FTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKIS 191
+T++ DL D +I LL+ L + D + ++ DY +
Sbjct: 98 YTYVDTDL--DEYIKDATEINLLKELLPFKLRSISEDNFIDWFLQKIQSSADYLANYSEE 155
Query: 192 FQDFQQSVTDEP 203
F+ S T+E
Sbjct: 156 FRKILVSKTEEK 167
>gnl|CDD|227087 COG4744, COG4744, Uncharacterized conserved protein [Function
unknown].
Length = 121
Score = 26.4 bits (58), Expect = 7.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 155 RNSLISHPQDEDPDEGVRDLVELAL 179
R + P+D+DP GV +L + A+
Sbjct: 9 RMRFLEDPEDDDPMTGVANLFDAAM 33
>gnl|CDD|130917 TIGR01858, tag_bisphos_ald, class II aldolase, tagatose
bisphosphate family. This model describes
tagatose-1,6-bisphosphate aldolases, and perhaps other
closely related class II aldolases. This tetrameric,
Zn2+-dependent enzyme is related to the class II
fructose bisphosphate aldolase; fructose
1,6-bisphosphate and tagatose 1,6 bisphosphate differ
only in chirality at C4.
Length = 282
Score = 27.1 bits (60), Expect = 8.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 158 LISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQD 194
L+ H + PDE VR +EL + K++ + KI+F
Sbjct: 203 LVLHGASDVPDEDVRRTIELGICKVNVATELKIAFSG 239
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.140 0.415
Gapped
Lambda K H
0.267 0.0908 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,164,435
Number of extensions: 1196783
Number of successful extensions: 1548
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1531
Number of HSP's successfully gapped: 57
Length of query: 229
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 135
Effective length of database: 6,768,326
Effective search space: 913724010
Effective search space used: 913724010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 57 (25.4 bits)