RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8447
(229 letters)
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 136 bits (344), Expect = 2e-40
Identities = 39/168 (23%), Positives = 77/168 (45%), Gaps = 3/168 (1%)
Query: 48 QVSGLPPSNVTERYKGFSPFSFQG-LDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCD 106
V L + + YK F G L F++ + +E++F FD D
Sbjct: 7 AVEELSATECHQWYKKFMTECPSGQLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKD 66
Query: 107 GVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDED 166
G I E+V LS L+G ++ +++ F +YD++ +G I R E+ +++ + +E
Sbjct: 67 GYIDFMEYVAALSLVLKGKVDQKLRWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNE- 125
Query: 167 PDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAFGQCLP 214
+ + K+D + DG++S ++F + V + +LL+ + L
Sbjct: 126 -AMTAEEFTNMVFDKIDINGDGELSLEEFMEGVQKDEVLLDILTRSLD 172
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 135 bits (342), Expect = 8e-40
Identities = 43/168 (25%), Positives = 81/168 (48%), Gaps = 4/168 (2%)
Query: 46 VVQVSGLPPSNVTERYKGFSPFSFQG-LDRVVFRELLHNTFDLVTEEILMERIFCAFDRL 104
+ S + Y+GF G ++ F+E+ F +F AFD
Sbjct: 55 LEAQSKFTKKELQILYRGFKNECPSGVVNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTD 114
Query: 105 CDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLR---NSLISH 161
+G + ++++ GLS LRGT +E + + F +YD+N DG+IT+EEM +++ + +
Sbjct: 115 HNGAVSFEDFIKGLSILLRGTVQEKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKC 174
Query: 162 PQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAF 209
++ R VE +KMD +KDG ++ +F +S + ++ +
Sbjct: 175 TYPVLKEDAPRQHVETFFQKMDKNKDGVVTIDEFIESCQKDENIMRSM 222
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 132 bits (334), Expect = 1e-38
Identities = 40/153 (26%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 61 YKGFSPFSFQG-LDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLS 119
Y+GF G ++ F+++ F +F AFD G + +++V LS
Sbjct: 57 YRGFKNECPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALS 116
Query: 120 CFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLR---NSLISHPQDEDPDEGVRDLVE 176
LRGT E +++TF +YD+N DG+I +EEM +++ + + + ++ R V+
Sbjct: 117 ILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVD 176
Query: 177 LALRKMDYDKDGKISFQDFQQSVTDEPLLLEAF 209
+ +KMD +KDG ++ +F +S ++ ++ +
Sbjct: 177 VFFQKMDKNKDGIVTLDEFLESCQEDDNIMRSL 209
Score = 27.6 bits (61), Expect = 3.1
Identities = 12/71 (16%), Positives = 18/71 (25%), Gaps = 8/71 (11%)
Query: 125 TNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDY 184
T EL + G + E Q+ P D
Sbjct: 49 TKRELQVLYRGFKNECPSGVVNEETFKQIYAQFF--------PHGDASTYAHYLFNAFDT 100
Query: 185 DKDGKISFQDF 195
+ G + F+DF
Sbjct: 101 TQTGSVKFEDF 111
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 128 bits (323), Expect = 2e-37
Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 4/153 (2%)
Query: 61 YKGFSPFSFQG-LDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLS 119
YKGF G LD F+++ F +F FD DG I E++ LS
Sbjct: 31 YKGFIKDCPSGQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDGRIEFSEFIQALS 90
Query: 120 CFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDP---DEGVRDLVE 176
RGT +E +++ F +YDL+NDG+ITR EM ++ + + V+
Sbjct: 91 VTSRGTLDEKLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVD 150
Query: 177 LALRKMDYDKDGKISFQDFQQSVTDEPLLLEAF 209
MD + DGK++ Q+FQ+ +P +++A
Sbjct: 151 RIFAMMDKNADGKLTLQEFQEGSKADPSIVQAL 183
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 127 bits (321), Expect = 4e-37
Identities = 42/150 (28%), Positives = 76/150 (50%), Gaps = 4/150 (2%)
Query: 72 LDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIK 131
L F+++ N F E +F FD DG I E+++ LS RG E+ +K
Sbjct: 43 LSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFIIALSVTSRGKLEQKLK 102
Query: 132 FTFLIYDLNNDGFITREEMFQLLR---NSLISHPQDEDPDEGVRDLVELALRKMDYDKDG 188
+ F +YDL+ +G+I++ EM ++++ + S + + + E R+MD ++DG
Sbjct: 103 WAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDG 162
Query: 189 KISFQDFQQSVTDEPLLLEAFGQCLPSDAA 218
K+S ++F + +P ++ QC PS A
Sbjct: 163 KLSLEEFIRGAKSDPSIVRLL-QCDPSSAG 191
Score = 34.4 bits (79), Expect = 0.016
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 8/71 (11%)
Query: 125 TNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDY 184
T E+ ++ G ++ EE ++ N P E R D
Sbjct: 23 TEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFF--------PYGDASKFAEHVFRTFDA 74
Query: 185 DKDGKISFQDF 195
+ DG I F++F
Sbjct: 75 NGDGTIDFREF 85
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 126 bits (319), Expect = 7e-37
Identities = 36/141 (25%), Positives = 72/141 (51%), Gaps = 3/141 (2%)
Query: 72 LDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIK 131
++ F+++ F +F AFD G + +++V LS LRGT E ++
Sbjct: 36 VNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLR 95
Query: 132 FTFLIYDLNNDGFITREEMFQLLRNSLI---SHPQDEDPDEGVRDLVELALRKMDYDKDG 188
+TF +YD+N DG+I +EEM +++ + ++ R V++ +KMD +KDG
Sbjct: 96 WTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDG 155
Query: 189 KISFQDFQQSVTDEPLLLEAF 209
++ +F +S ++ ++ +
Sbjct: 156 IVTLDEFLESXQEDDNIMRSL 176
Score = 27.9 bits (62), Expect = 2.0
Identities = 12/71 (16%), Positives = 18/71 (25%), Gaps = 8/71 (11%)
Query: 125 TNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDY 184
T EL + G + E Q+ P D
Sbjct: 16 TKRELQVLYRGFKNEXPSGVVNEETFKQIYAQFF--------PHGDASTYAHYLFNAFDT 67
Query: 185 DKDGKISFQDF 195
+ G + F+DF
Sbjct: 68 TQTGSVKFEDF 78
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 128 bits (322), Expect = 1e-36
Identities = 44/166 (26%), Positives = 81/166 (48%), Gaps = 4/166 (2%)
Query: 48 QVSGLPPSNVTERYKGFSPFSFQG-LDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCD 106
+ + Y+GF G +D F+ + F +F AFD +
Sbjct: 84 AQTKFTKKELQSLYRGFKNECPTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGN 143
Query: 107 GVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDED 166
G IH +++V+GLS LRGT E +K+ F +YD+N DG IT+EEM ++++ +
Sbjct: 144 GAIHFEDFVVGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTY 203
Query: 167 P---DEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAF 209
P ++ + VE +KMD ++DG ++ +F ++ + ++ +
Sbjct: 204 PILREDAPLEHVERFFQKMDRNQDGVVTIDEFLETCQKDENIMNSM 249
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 126 bits (318), Expect = 2e-36
Identities = 30/165 (18%), Positives = 68/165 (41%), Gaps = 4/165 (2%)
Query: 61 YKGFSPFSFQG-LDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLS 119
Y+ F G F+ LL +++++ FD DG + E++ ++
Sbjct: 25 YRTFMMEYPSGLQTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNKDGFVDFLEFIAAVN 84
Query: 120 CFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELAL 179
++ E+ +K+ F +YD + +G I + E+ + + Q E + + L
Sbjct: 85 LIMQEKMEQKLKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQTLSPE---EFINLVF 141
Query: 180 RKMDYDKDGKISFQDFQQSVTDEPLLLEAFGQCLPSDAARQSFLS 224
K+D + DG+++ ++F + + LLE + + +
Sbjct: 142 HKIDINNDGELTLEEFINGMAKDQDLLEIVYKSFDFSNVLRVICN 186
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 124 bits (314), Expect = 4e-36
Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 4/153 (2%)
Query: 61 YKGFSPFSFQG-LDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLS 119
YKGF G L++ F+++ F E +F FD +G I E++ LS
Sbjct: 31 YKGFFKDCPSGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGYIDFKEFICALS 90
Query: 120 CFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSL---ISHPQDEDPDEGVRDLVE 176
RG + + + F +YDL+N+G I+ +EM +++ S + + ++ V
Sbjct: 91 VTSRGELNDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVN 150
Query: 177 LALRKMDYDKDGKISFQDFQQSVTDEPLLLEAF 209
MD +KDG+++ ++F + +P ++ A
Sbjct: 151 KIFNMMDKNKDGQLTLEEFCEGSKRDPTIVSAL 183
Score = 30.9 bits (70), Expect = 0.20
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 8/71 (11%)
Query: 125 TNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDY 184
+EL ++ + G + + E ++ + P E D
Sbjct: 23 DKKELQQWYKGFFKDCPSGHLNKSEFQKIYKQFF--------PFGDPSAFAEYVFNVFDA 74
Query: 185 DKDGKISFQDF 195
DK+G I F++F
Sbjct: 75 DKNGYIDFKEF 85
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 123 bits (311), Expect = 2e-35
Identities = 48/196 (24%), Positives = 83/196 (42%), Gaps = 38/196 (19%)
Query: 15 RQEVETLCKIFKKLLNSSSNAGVPISTSTPVVVQVSGLPPSNVTERYKGFSPFSFQGLDR 74
+EVE L ++FKKL +S + G+ + +
Sbjct: 33 VEEVEALYELFKKLSSSIIDDGL----------------------------------IHK 58
Query: 75 VVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFL-RGTNEELIKFT 133
F+ L + + +RIF FD +GVI E+V L F E +KF
Sbjct: 59 EEFQLALF--RNRNRRNLFADRIFDVFDVKRNGVIEFGEFVRSLGVFHPSAPVHEKVKFA 116
Query: 134 FLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQ 193
F +YDL GFI REE+ +++ +L+ + ++ + +V+ A + D DGKI
Sbjct: 117 FKLYDLRQTGFIEREELKEMVV-ALLHESELVLSEDMIEVMVDKAFVQADRKNDGKIDID 175
Query: 194 DFQQSVTDEPLLLEAF 209
+++ V+ P L++
Sbjct: 176 EWKDFVSLNPSLIKNM 191
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 123 bits (309), Expect = 3e-35
Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 4/153 (2%)
Query: 61 YKGFSPFSFQG-LDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLS 119
+KGF G L R F ++ F + E +F FD+ +G IH +E++ LS
Sbjct: 31 HKGFLRDCPSGQLAREDFVKIYKQFFPFGSPEDFANHLFTVFDKDNNGFIHFEEFITVLS 90
Query: 120 CFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLI---SHPQDEDPDEGVRDLVE 176
RGT EE + + F +YDLN+DG+IT +EM ++ + S + + V+
Sbjct: 91 TTSRGTLEEKLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVK 150
Query: 177 LALRKMDYDKDGKISFQDFQQSVTDEPLLLEAF 209
+ MD ++DG I+ +F++ +P ++ A
Sbjct: 151 KIFKLMDKNEDGYITLDEFREGSKVDPSIIGAL 183
Score = 26.0 bits (57), Expect = 8.9
Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 8/73 (10%)
Query: 125 TNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDY 184
E+ ++ G + RE+ ++ + P D D
Sbjct: 23 DRREIQQWHKGFLRDCPSGQLAREDFVKIYKQFF--------PFGSPEDFANHLFTVFDK 74
Query: 185 DKDGKISFQDFQQ 197
D +G I F++F
Sbjct: 75 DNNGFIHFEEFIT 87
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 122 bits (307), Expect = 7e-35
Identities = 28/166 (16%), Positives = 65/166 (39%), Gaps = 7/166 (4%)
Query: 61 YKGFSPFSFQG-LDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLS 119
Y+ F G + + F+ + F + + +F +FD DG + E+V+ L
Sbjct: 39 YQSFLKDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSNLDGTLDFKEYVIALH 98
Query: 120 CFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLR-----NSLISHPQDEDPDEGVRDL 174
G + +++ F +YD++ +G I++ E+ +++ + D +
Sbjct: 99 MTTAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENTPEKR 158
Query: 175 VELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAFGQCLPSDAARQ 220
E + + D K++ ++F + +L Q P +
Sbjct: 159 AEKIWKYFGKNDDDKLTEKEFIEGTLANKEILRLI-QFEPQKVKEK 203
Score = 31.9 bits (72), Expect = 0.12
Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 8/77 (10%)
Query: 125 TNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDY 184
+ EEL + G IT+++ + PD + + R D
Sbjct: 31 SEEELCSWYQSFLKDCPTGRITQQQFQSIYAKFF--------PDTDPKAYAQHVFRSFDS 82
Query: 185 DKDGKISFQDFQQSVTD 201
+ DG + F+++ ++
Sbjct: 83 NLDGTLDFKEYVIALHM 99
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 121 bits (305), Expect = 3e-34
Identities = 44/196 (22%), Positives = 84/196 (42%), Gaps = 38/196 (19%)
Query: 15 RQEVETLCKIFKKLLNSSSNAGVPISTSTPVVVQVSGLPPSNVTERYKGFSPFSFQGLDR 74
E+E L ++FKK+ ++ + G+ +++
Sbjct: 44 VSEIEALYELFKKISSAVIDDGL----------------------------------INK 69
Query: 75 VVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFL-RGTNEELIKFT 133
F+ L T E + +R+F FD +G++ +E+ LS F ++ I F+
Sbjct: 70 EEFQLALFKTN--KKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIHFS 127
Query: 134 FLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQ 193
F +YDL GFI R+E+ Q++ +L + D + D+++ + D DGKI +
Sbjct: 128 FQLYDLKQQGFIERQEVKQMVVATLAESGMNLK-DTVIEDIIDKTFEEADTKHDGKIDKE 186
Query: 194 DFQQSVTDEPLLLEAF 209
+++ V P LL+
Sbjct: 187 EWRSLVLRHPSLLKNM 202
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 112 bits (282), Expect = 4e-31
Identities = 39/197 (19%), Positives = 72/197 (36%), Gaps = 35/197 (17%)
Query: 15 RQEVETLCKIFKKLLNSSSNAGVPISTSTPVVVQVSGLPPSNVTERYKGFSPFSFQGLDR 74
+QE+ + F +LL +V + PF
Sbjct: 47 KQEILLAHRRFCELLPQE---------------------QRSVESSLRAQVPFE----QI 81
Query: 75 VVFRELLHNTFDLVTEEILMERIFCAFDRLC-DGVIHLDEWVLGLSCF-LRGTNEELIKF 132
+ EL N F ERI F + ++++ LS F T + +
Sbjct: 82 LSLPELKANPF--------KERICRVFSTSPAKDSLSFEDFLDLLSVFSDTATPDIKSHY 133
Query: 133 TFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISF 192
F I+D ++DG + RE++ +L+ ++ L++ L + D D+DG I+
Sbjct: 134 AFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINL 193
Query: 193 QDFQQSVTDEPLLLEAF 209
+FQ ++ P +F
Sbjct: 194 SEFQHVISRSPDFASSF 210
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 111 bits (279), Expect = 7e-31
Identities = 39/197 (19%), Positives = 72/197 (36%), Gaps = 35/197 (17%)
Query: 15 RQEVETLCKIFKKLLNSSSNAGVPISTSTPVVVQVSGLPPSNVTERYKGFSPFSFQGLDR 74
+QE+ + F +LL +V + PF
Sbjct: 16 KQEILLAHRRFCELLPQEQ---------------------RSVESSLRAQVPFE----QI 50
Query: 75 VVFRELLHNTFDLVTEEILMERIFCAFDRLC-DGVIHLDEWVLGLSCFL-RGTNEELIKF 132
+ EL N F ERI F + ++++ LS F T + +
Sbjct: 51 LSLPELKANPF--------KERICRVFSTSPAKDSLSFEDFLDLLSVFSDTATPDIKSHY 102
Query: 133 TFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISF 192
F I+D ++DG + RE++ +L+ ++ L++ L + D D+DG I+
Sbjct: 103 AFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINL 162
Query: 193 QDFQQSVTDEPLLLEAF 209
+FQ ++ P +F
Sbjct: 163 SEFQHVISRSPDFASSF 179
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 107 bits (269), Expect = 3e-29
Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 10/175 (5%)
Query: 48 QVSGLPPSNVTERYKGFSPFSFQG-LDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCD 106
V + + E YK F G L F+ D +E +F AFD D
Sbjct: 15 AVGAADAAQLQEWYKKFLEECPSGTLFMHEFKRFFKV-PDNEEATQYVEAMFRAFDTNGD 73
Query: 107 GVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRN--------SL 158
I E+V L+ LRGT E +K+TF IYD + +G I R+E+ ++ + S+
Sbjct: 74 NTIDFLEYVAALNLVLRGTLEHKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSV 133
Query: 159 ISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAFGQCL 213
+ + ++V+ +D + DG++S +F + + +++ L
Sbjct: 134 EVEAEQQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFVEGARRDKWVMKMLQMDL 188
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 85.2 bits (211), Expect = 1e-20
Identities = 36/174 (20%), Positives = 69/174 (39%), Gaps = 22/174 (12%)
Query: 48 QVSGLPPSNVTERYKGFSPFSFQGLDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDG 107
+ +G S +T Y F+ + + RE +L L +RI AF +
Sbjct: 19 KETGFSHSQITRLYSRFTSLDKGE-NGTLSREDFQRIPELAINP-LGDRIINAFFSEGED 76
Query: 108 VIHLDEWVLGLSCFL----------------RGTNEELIKFTFLIYDLNNDGFITREEMF 151
++ ++ L+ F + + F F +YDL+ D I+R+E+
Sbjct: 77 QVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELL 136
Query: 152 QLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLL 205
Q+LR + + DE + + +++ D D D ISF +F + + +
Sbjct: 137 QVLRMMVGVNISDEQLGS----IADRTIQEADQDGDSAISFTEFVKVLEKVDVE 186
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 77.7 bits (192), Expect = 3e-18
Identities = 34/109 (31%), Positives = 62/109 (56%), Gaps = 5/109 (4%)
Query: 93 LMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTN-EELIKFTFLIYDLNNDGFITREEMF 151
L++R+ FD +G + E++ G+S F + E+ ++F F IYD++ DG+I+ E+F
Sbjct: 39 LVQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELF 98
Query: 152 QLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVT 200
Q+L+ + ++ +D + V + A D D DG+ISF++F V
Sbjct: 99 QVLKMMVGNNLKDTQLQQIVDKTIINA----DKDGDGRISFEEFCAVVG 143
Score = 36.1 bits (84), Expect = 0.003
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 13/66 (19%)
Query: 130 IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGK 189
+ F DL+N G ++ EE F L L +P V+ ++++ D D +G+
Sbjct: 8 LGKRFKKLDLDNSGSLSVEE-FMSLP-ELQQNPL-------VQRVIDIF----DTDGNGE 54
Query: 190 ISFQDF 195
+ F++F
Sbjct: 55 VDFKEF 60
Score = 26.0 bits (58), Expect = 7.2
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 12/91 (13%)
Query: 77 FRE----LLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTN------ 126
F+E + + E+ L F +D DG I E L + G N
Sbjct: 57 FKEFIEGVSQFSVKGDKEQKLRF-AFRIYDMDKDGYISNGELFQVLKM-MVGNNLKDTQL 114
Query: 127 EELIKFTFLIYDLNNDGFITREEMFQLLRNS 157
++++ T + D + DG I+ EE ++
Sbjct: 115 QQIVDKTIINADKDGDGRISFEEFCAVVGGL 145
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 76.7 bits (189), Expect = 2e-17
Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 21/125 (16%)
Query: 93 LMERIFCAFDRLCDGVIHLDEWVLGLSCFL-----------------RGTNEELIKFTFL 135
L +RI +F + +V L+ F + + + F
Sbjct: 62 LGDRIIESFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQ 121
Query: 136 IYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDF 195
+YDL+ DG I+R EM Q+LR + +E + ++ + +++ D D DG +SF +F
Sbjct: 122 LYDLDRDGKISRHEMLQVLRLMVGVQVTEEQ----LENIADRTVQEADEDGDGAVSFVEF 177
Query: 196 QQSVT 200
+S+
Sbjct: 178 TKSLE 182
Score = 25.9 bits (57), Expect = 9.8
Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 6/101 (5%)
Query: 62 KGFSPFSFQGLDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDE--WVLGLS 119
+ + F + ++ L F +D DG I E VL L
Sbjct: 85 RVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHY-AFQLYDLDRDGKISRHEMLQVLRLM 143
Query: 120 CFLRGTNEEL---IKFTFLIYDLNNDGFITREEMFQLLRNS 157
++ T E+L T D + DG ++ E + L
Sbjct: 144 VGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKSLEKM 184
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 63.8 bits (155), Expect = 3e-13
Identities = 14/78 (17%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 125 TNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDP---DEGVRDLVELALRK 181
+ +EL F ++D + + + E+ + + ++ P ++ + ++++ LR
Sbjct: 65 SPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRD 124
Query: 182 MDYDKDGKISFQDFQQSV 199
D + DG I + +F +S+
Sbjct: 125 DDKNNDGYIDYAEFAKSL 142
Score = 31.1 bits (70), Expect = 0.13
Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 12/79 (15%)
Query: 89 TEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTN------------EELIKFTFLI 136
+ + L F D + ++ E ++ + +I
Sbjct: 65 SPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRD 124
Query: 137 YDLNNDGFITREEMFQLLR 155
D NNDG+I E + L+
Sbjct: 125 DDKNNDGYIDYAEFAKSLQ 143
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 66.6 bits (163), Expect = 5e-13
Identities = 21/128 (16%), Positives = 52/128 (40%), Gaps = 13/128 (10%)
Query: 70 QGLDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEEL 129
G ++ E+ + E+ + I A D +G I E+V +++
Sbjct: 370 DGYSKLSGEEVAVFDLPQIESEV--DAILGAADFDRNGYIDYSEFVTVAMDRKSLLSKDK 427
Query: 130 IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGK 189
++ F +D + +G I+ +E+ + D + +++ + +D + DG
Sbjct: 428 LESAFQKFDQDGNGKISVDELASVF-------GLDHLESKTWKEM----ISGIDSNNDGD 476
Query: 190 ISFQDFQQ 197
+ F++F +
Sbjct: 477 VDFEEFCK 484
Score = 51.2 bits (123), Expect = 7e-08
Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Query: 125 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKM 182
+ EE + F D N DG + R+E+ D + ++ + L
Sbjct: 341 SQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAI-LGAA 399
Query: 183 DYDKDGKISFQDF------QQSVTDEPLLLEAF 209
D+D++G I + +F ++S+ + L AF
Sbjct: 400 DFDRNGYIDYSEFVTVAMDRKSLLSKDKLESAF 432
Score = 35.4 bits (82), Expect = 0.012
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 91 EILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEM 150
+ +E F FD+ +G I +DE L L + K D NNDG + EE
Sbjct: 425 KDKLESAFQKFDQDGNGKISVDE--LASVFGLDHLESKTWKEMISGIDSNNDGDVDFEEF 482
Query: 151 FQLLRN 156
++++
Sbjct: 483 CKMIQK 488
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 65.5 bits (160), Expect = 1e-12
Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 16/135 (11%)
Query: 70 QGLDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEEL 129
+G + + + V EE+ + I D +G I E++ +EE
Sbjct: 379 EGYNVLRNFKNELGELKNVEEEV--DNILKEVDFDKNGYIEYSEFISVCMDKQILFSEER 436
Query: 130 IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGK 189
++ F ++D + G IT+EE+ L + I ++ D+ L + D +KD
Sbjct: 437 LRRAFNLFDTDKSGKITKEELANLFGLTSI-------SEKTWNDV----LGEADQNKDNM 485
Query: 190 ISFQDFQ---QSVTD 201
I F +F + D
Sbjct: 486 IDFDEFVSMMHKICD 500
Score = 48.9 bits (117), Expect = 4e-07
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 125 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKM 182
T EE + F D N DG + ++E+ + L + + + V + V+ L+++
Sbjct: 350 TLEERKELTDIFKKLDKNGDGQLDKKELIEGYN-VLRNFKNELGELKNVEEEVDNILKEV 408
Query: 183 DYDKDGKISFQDF------QQSVTDEPLLLEAF 209
D+DK+G I + +F +Q + E L AF
Sbjct: 409 DFDKNGYIEYSEFISVCMDKQILFSEERLRRAF 441
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 65.1 bits (159), Expect = 2e-12
Identities = 24/136 (17%), Positives = 54/136 (39%), Gaps = 15/136 (11%)
Query: 70 QGLDRVV-FRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEE 128
+G ++ + + D E ++++ A D +G I E+V + E
Sbjct: 359 EGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKNGYIEYSEFVTVAMDRKTLLSRE 418
Query: 129 LIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDG 188
++ F ++D +N G I+ E+ + + E + + L ++D + DG
Sbjct: 419 RLERAFRMFDSDNSGKISSTELATIFG-------VSDVDSETWKSV----LSEVDKNNDG 467
Query: 189 KISFQDFQ---QSVTD 201
++ F +FQ +
Sbjct: 468 EVDFDEFQQMLLKLCG 483
Score = 49.3 bits (118), Expect = 3e-07
Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 10/95 (10%)
Query: 125 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDP--DEGVRDLVELALR 180
+ +E + F D N DG + R E+ + + + QD V V+ L
Sbjct: 330 SQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLD 389
Query: 181 KMDYDKDGKISFQDF------QQSVTDEPLLLEAF 209
+D+DK+G I + +F ++++ L AF
Sbjct: 390 AVDFDKNGYIEYSEFVTVAMDRKTLLSRERLERAF 424
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 61.9 bits (151), Expect = 4e-12
Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 11/124 (8%)
Query: 74 RVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFT 133
+ + + + D G I E+ + + + +++LI
Sbjct: 75 KKGLEKDGLKL----PYNF--DLLLDQIDSDGSGKIDYTEF-IAAALDRKQLSKKLIYCA 127
Query: 134 FLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQ 193
F ++D++NDG IT E+ +L N + V+ + +R +D + DGKI F
Sbjct: 128 FRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRM----IRDVDKNNDGKIDFH 183
Query: 194 DFQQ 197
+F +
Sbjct: 184 EFSE 187
Score = 49.2 bits (118), Expect = 1e-07
Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 17/92 (18%)
Query: 125 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKM 182
+ ++ +K TFL+ D + G+IT+E++ + L L++ ++
Sbjct: 47 NDYDVEKLKSTFLVLDEDGKGYITKEQLKKGLE-KDGLKLPYN-----FDLLLD----QI 96
Query: 183 DYDKDGKISFQDF-----QQSVTDEPLLLEAF 209
D D GKI + +F + + L+ AF
Sbjct: 97 DSDGSGKIDYTEFIAAALDRKQLSKKLIYCAF 128
Score = 28.0 bits (63), Expect = 1.8
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 6/75 (8%)
Query: 86 DLVTEEILMERIFCAFDRLCDGVIHLDEW-----VLGLSCFLRGTNEELIKFTFLIYDLN 140
++++++ F FD DG I E + + +K D N
Sbjct: 117 KQLSKKLIYC-AFRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVDKN 175
Query: 141 NDGFITREEMFQLLR 155
NDG I E ++++
Sbjct: 176 NDGKIDFHEFSEMMK 190
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 62.8 bits (153), Expect = 1e-11
Identities = 22/132 (16%), Positives = 50/132 (37%), Gaps = 13/132 (9%)
Query: 70 QGLDRVVFRELLHNTFDLVTEEILME----RIFCAFDRLCDGVIHLDEWVLGLSCFLRGT 125
+G + + + + + E +E + D G I E++
Sbjct: 355 RGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLDMDGSGSIEYSEFIASAIDRTILL 414
Query: 126 NEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYD 185
+ E ++ F ++D + G I+ +E L +E +E + ++D +
Sbjct: 415 SRERMERAFKMFDKDGSGKISTKE----LFKLFSQADSSIQMEE-----LESIIEQVDNN 465
Query: 186 KDGKISFQDFQQ 197
KDG++ F +F +
Sbjct: 466 KDGEVDFNEFVE 477
Score = 48.5 bits (116), Expect = 5e-07
Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 13/98 (13%)
Query: 125 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDP-----DEGVRDLVEL 177
T +E + F D NNDG + R+E+ + + D + + D ++
Sbjct: 326 TLDETKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDS 385
Query: 178 ALRKMDYDKDGKISFQDF------QQSVTDEPLLLEAF 209
+ +D D G I + +F + + + AF
Sbjct: 386 LMPLLDMDGSGSIEYSEFIASAIDRTILLSRERMERAF 423
Score = 38.5 bits (90), Expect = 0.001
Identities = 18/66 (27%), Positives = 25/66 (37%)
Query: 91 EILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEM 150
MER F FD+ G I E S E ++ D N DG + E
Sbjct: 416 RERMERAFKMFDKDGSGKISTKELFKLFSQADSSIQMEELESIIEQVDNNKDGEVDFNEF 475
Query: 151 FQLLRN 156
++L+N
Sbjct: 476 VEMLQN 481
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 61.4 bits (149), Expect = 1e-11
Identities = 31/154 (20%), Positives = 58/154 (37%), Gaps = 13/154 (8%)
Query: 74 RVVFRELLHN-TFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFL---------- 122
+ + +ELL + M+ + + DG I + E L
Sbjct: 39 QNLIQELLQARKKAGLELSPEMKTFVDQYGQRDDGKIGIVELAHVLPTEENFLLLFRCQQ 98
Query: 123 RGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKM 182
+ EE +K T+ YD ++ GFI EE+ L++ L+ D + + +L L+
Sbjct: 99 LKSCEEFMK-TWRKYDTDHSGFIETEELKNFLKD-LLEKANKTVDDTKLAEYTDLMLKLF 156
Query: 183 DYDKDGKISFQDFQQSVTDEPLLLEAFGQCLPSD 216
D + DGK+ + + + + L F
Sbjct: 157 DSNNDGKLELTEMARLLPVQENFLLKFQGIKMCG 190
Score = 60.3 bits (146), Expect = 3e-11
Identities = 25/135 (18%), Positives = 45/135 (33%), Gaps = 15/135 (11%)
Query: 74 RVVFRELLHNTFDLVTEEILME---RIFCAFDRLCDGVIHLDEWV--------LGLSCFL 122
+ ++LL V + L E + FD DG + L E L
Sbjct: 126 KNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELTEMARLLPVQENFLLKFQG 185
Query: 123 RGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKM 182
+ F +YD + +G+I E+ LL++ + ++ D ++ M
Sbjct: 186 IKMCGKEFNKAFELYDQDGNGYIDENELDALLKD--LCEKNKQELDI--NNISTYKKNIM 241
Query: 183 DYDKDGKISFQDFQQ 197
GK+ D
Sbjct: 242 ALSDGGKLYRTDLAL 256
Score = 54.1 bits (130), Expect = 5e-09
Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 10/124 (8%)
Query: 86 DLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTN--------EELIKFTFLIY 137
L + E M+ + +D G I +E L L N E ++
Sbjct: 98 QLKSCEEFMK-TWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLF 156
Query: 138 DLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 197
D NNDG + EM +LL + + ++ + A D D +G I +
Sbjct: 157 DSNNDGKLELTEMARLLPVQENFLLKFQGIKMCGKEFNK-AFELYDQDGNGYIDENELDA 215
Query: 198 SVTD 201
+ D
Sbjct: 216 LLKD 219
Score = 46.4 bits (110), Expect = 2e-06
Identities = 13/80 (16%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 130 IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGK 189
+L +D + G++ +E+ L++ L+ + + + ++ + + DGK
Sbjct: 18 FFEIWLHFDADGSGYLEGKELQNLIQ-ELLQARKKAGLE--LSPEMKTFVDQYGQRDDGK 74
Query: 190 ISFQDFQQSVTDEPLLLEAF 209
I + + E L F
Sbjct: 75 IGIVELAHVLPTEENFLLLF 94
Score = 42.9 bits (101), Expect = 3e-05
Identities = 24/121 (19%), Positives = 38/121 (31%), Gaps = 24/121 (19%)
Query: 96 RIFCAFDRLCDGVIHLDEWVLGLSCFLR-----------GTNEELIKFTFLIYDLNNDGF 144
I+ FD G + E L ++ + E+ F Y +DG
Sbjct: 20 EIWLHFDADGSGYLEGKE----LQNLIQELLQARKKAGLELSPEMKTF-VDQYGQRDDGK 74
Query: 145 ITREEMFQLLRNS----LISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVT 200
I E+ +L L+ Q E RK D D G I ++ + +
Sbjct: 75 IGIVELAHVLPTEENFLLLFRCQQLKSCEEFMK----TWRKYDTDHSGFIETEELKNFLK 130
Query: 201 D 201
D
Sbjct: 131 D 131
Score = 34.8 bits (80), Expect = 0.012
Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 94 MERIFCAFDRLCDGVIHLDE-----WVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITRE 148
+ F +D+ +G I +E L + + I L++ G + R
Sbjct: 193 FNKAFELYDQDGNGYIDENELDALLKDLCEKNKQELDINNISTYKKNIMALSDGGKLYRT 252
Query: 149 EMFQLLR 155
++ +L
Sbjct: 253 DLALILS 259
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 59.7 bits (145), Expect = 2e-11
Identities = 17/121 (14%), Positives = 40/121 (33%), Gaps = 21/121 (17%)
Query: 91 EILMERIFCAFDRLC-----DGVIHLDEWVLGLSCFLRGTNEE-----LIKFTFLIYDLN 140
++LM+ + +D I ++ + ++ + + F D N
Sbjct: 47 KVLMDSLTGVWDNFLTAVAGGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTN 106
Query: 141 NDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVT 200
D I+R+E + + +D + DG +S ++F + +
Sbjct: 107 EDNNISRDEYGIFFGMLGLD---KTMAPA--------SFDAIDTNNDGLLSLEEFVIAGS 155
Query: 201 D 201
D
Sbjct: 156 D 156
Score = 42.8 bits (101), Expect = 2e-05
Identities = 11/68 (16%), Positives = 19/68 (27%), Gaps = 2/68 (2%)
Query: 130 IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKM--DYDKD 187
+K F D + DG ITR + + + + + D +
Sbjct: 8 MKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAGG 67
Query: 188 GKISFQDF 195
I F
Sbjct: 68 KGIDETTF 75
Score = 42.0 bits (99), Expect = 3e-05
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 94 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQL 153
+ F A D D I DE+ + G ++ + +F D NNDG ++ EE
Sbjct: 96 LPLFFRAVDTNEDNNISRDEYGIFFGML--GLDKTMAPASFDAIDTNNDGLLSLEEFVIA 153
Query: 154 LRNSLISHPQ 163
+ ++
Sbjct: 154 GSDFFMNDGD 163
Score = 26.6 bits (59), Expect = 5.3
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 7/40 (17%)
Query: 180 RKMDYDKDGKISFQDFQQSVTDEPLLLEAFGQCLPSDAAR 219
++D+DKDG I+ DF+ + E F + A
Sbjct: 13 NRIDFDKDGAITRMDFES-------MAERFAKESEMKAEH 45
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 60.1 bits (146), Expect = 2e-11
Identities = 19/115 (16%), Positives = 39/115 (33%), Gaps = 16/115 (13%)
Query: 94 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEE-------LIKFTFLIYDLNNDGFIT 146
R+ I ++E + + L E + D + DG+++
Sbjct: 61 FLRVADQLGLAPGVRISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVS 120
Query: 147 REEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTD 201
E L+ + D+ +D++K+G+IS +F +V D
Sbjct: 121 LPEFKAFLQA-VGPDLTDDKAIT--------CFNTLDFNKNGQISRDEFLVTVND 166
Score = 57.1 bits (138), Expect = 2e-10
Identities = 27/138 (19%), Positives = 43/138 (31%), Gaps = 18/138 (13%)
Query: 94 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNE---------ELIKFTFLIYDLNNDGF 144
M+ D DG I +++ L + + L
Sbjct: 16 MKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAPGVR 75
Query: 145 ITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPL 204
I+ EE +SL+ +E + +D DKDG +S +F+
Sbjct: 76 ISVEEAAVNATDSLLKMKGEE--KAMAVIQSLIMYDCIDTDKDGYVSLPEFKA------- 126
Query: 205 LLEAFGQCLPSDAARQSF 222
L+A G L D A F
Sbjct: 127 FLQAVGPDLTDDKAITCF 144
Score = 40.5 bits (95), Expect = 1e-04
Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 4/80 (5%)
Query: 90 EEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREE 149
I ++ D DG + L E+ L ++ F D N +G I+R+E
Sbjct: 100 AVIQSLIMYDCIDTDKDGYVSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNKNGQISRDE 159
Query: 150 MFQLLRNSLISHPQDEDPDE 169
+ + L +
Sbjct: 160 FLVTVNDFLFG----LEETA 175
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 60.8 bits (147), Expect = 2e-11
Identities = 21/139 (15%), Positives = 47/139 (33%), Gaps = 16/139 (11%)
Query: 74 RVVFRELLHNTFDLVTEEILME---RIFCAFDRLCDGVIHLDEWV------------LGL 118
+ ++L + L E + FD+ DG + L++ +
Sbjct: 127 KNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLARILALQENFLLQFKM 186
Query: 119 SCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELA 178
+ + + F YD++ G + E+ +++ ++ + + E
Sbjct: 187 DASSQVERKRDFEKIFAHYDVSRTGALEGPEVDGFVKD-MMELVRPSISGGDLDKFRECL 245
Query: 179 LRKMDYDKDGKISFQDFQQ 197
L D +KDGKI +
Sbjct: 246 LTHCDMNKDGKIQKSELAL 264
Score = 57.4 bits (138), Expect = 4e-10
Identities = 31/163 (19%), Positives = 65/163 (39%), Gaps = 17/163 (10%)
Query: 74 RVVFRELLH--NTFDLVTEEILME---RIFCAFDRLCDGVIHLDEWVLGL----SCFLRG 124
FR +L D +T+E + + A+D DG + ++E + FL
Sbjct: 34 DDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDATFDGRLQIEELANMILPQEENFLLI 93
Query: 125 T-------NEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVEL 177
N + YD ++ G+I+ E+ L++ + H + P++ + + +
Sbjct: 94 FRREAPLDNSVEFMKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNK-LDEYTDA 152
Query: 178 ALRKMDYDKDGKISFQDFQQSVTDEPLLLEAFGQCLPSDAARQ 220
++ D +KDG++ D + + + L F S R+
Sbjct: 153 MMKIFDKNKDGRLDLNDLARILALQENFLLQFKMDASSQVERK 195
Score = 50.4 bits (120), Expect = 9e-08
Identities = 24/136 (17%), Positives = 40/136 (29%), Gaps = 12/136 (8%)
Query: 77 FRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTN--------EE 128
F + L M+ I+ +D G I E L +E
Sbjct: 90 FLLIFRREAPLDNSVEFMK-IWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDE 148
Query: 129 LIKFTFLIYDLNNDGFITREEMFQLLR---NSLISHPQDEDPDEGVRDLVELALRKMDYD 185
I+D N DG + ++ ++L N L+ D + E D
Sbjct: 149 YTDAMMKIFDKNKDGRLDLNDLARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDVS 208
Query: 186 KDGKISFQDFQQSVTD 201
+ G + + V D
Sbjct: 209 RTGALEGPEVDGFVKD 224
Score = 49.3 bits (117), Expect = 2e-07
Identities = 14/63 (22%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 134 FLIYDLNNDGFITREEMFQLLRNSLISH-PQDEDPDEGVRDLVELALRKMDYDKDGKISF 192
+ +D +++G+I +E+ R+ L P+D+ DE V+ + + + D DG++
Sbjct: 17 WQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDATFDGRLQI 76
Query: 193 QDF 195
++
Sbjct: 77 EEL 79
Score = 43.5 bits (102), Expect = 2e-05
Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 12/118 (10%)
Query: 96 RIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNE----------ELIKFTFLIYDLNNDGFI 145
+I+ FD +G I E L+ ++ K YD DG +
Sbjct: 15 QIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDATFDGRL 74
Query: 146 TREEMFQLLRNSLISHPQDEDPDEGVRDLVEL--ALRKMDYDKDGKISFQDFQQSVTD 201
EE+ ++ + + + + VE RK D D G IS + + + D
Sbjct: 75 QIEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSSGYISAAELKNFLKD 132
Score = 34.7 bits (79), Expect = 0.018
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 94 MERIFCAFDRLCDGVIHLDE-----WVLGLSCFLRGTNEELIKFTFLI---YDLNNDGFI 145
E+IF +D G + E + + +L KF + D+N DG I
Sbjct: 198 FEKIFAHYDVSRTGALEGPEVDGFVKDMMELVRPSISGGDLDKFRECLLTHCDMNKDGKI 257
Query: 146 TREEMFQLL 154
+ E+ L
Sbjct: 258 QKSELALCL 266
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 60.2 bits (146), Expect = 6e-11
Identities = 20/134 (14%), Positives = 44/134 (32%), Gaps = 19/134 (14%)
Query: 77 FRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTN-EELIKFTFL 135
+++L D + E L +++F + G + + N + F
Sbjct: 144 LKQVLAKYADTIPEGPL-KKLFVMVENDTKGRMSYIT-------LVAVANDLAALVADFR 195
Query: 136 IYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDF 195
D N++G ++R+E + +D L R D D+ + F ++
Sbjct: 196 KIDTNSNGTLSRKEFREHFVRLGFDKKSVQD---------AL-FRYADEDESDDVGFSEY 245
Query: 196 QQSVTDEPLLLEAF 209
+L +
Sbjct: 246 VHLGLCLLVLRILY 259
Score = 59.1 bits (143), Expect = 1e-10
Identities = 19/121 (15%), Positives = 41/121 (33%), Gaps = 16/121 (13%)
Query: 77 FRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLI 136
FRE + +F D + E+V +++ +
Sbjct: 210 FREHFVRLGFDKKSVQ--DALFRYADEDESDDVGFSEYVHLG------LCLLVLRILYAF 261
Query: 137 YDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQ 196
D + G +++EE+ ++L ++ I + E +D D +S+Q+F
Sbjct: 262 ADFDKSGQLSKEEVQKVLEDAHIPESARKK--------FEHQFSVVDVDDSKSLSYQEFV 313
Query: 197 Q 197
Sbjct: 314 M 314
Score = 51.3 bits (123), Expect = 6e-08
Identities = 12/87 (13%), Positives = 32/87 (36%), Gaps = 11/87 (12%)
Query: 125 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKM 182
+ E+ ++ FL ++ G + +++ Q+L + ++ +
Sbjct: 117 SEEDTNILRQLFLSSAVSGSGKFSFQDLKQVLA-KYADTIPEGP--------LKKLFVMV 167
Query: 183 DYDKDGKISFQDFQQSVTDEPLLLEAF 209
+ D G++S+ D L+ F
Sbjct: 168 ENDTKGRMSYITLVAVANDLAALVADF 194
Score = 27.1 bits (60), Expect = 4.7
Identities = 8/66 (12%), Positives = 22/66 (33%), Gaps = 9/66 (13%)
Query: 94 MERIFCAFDRLCDGVIHLDE-----WVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITRE 148
+ ++ D G + +E + R E + D+++ ++ +
Sbjct: 255 LRILYAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQFS----VVDVDDSKSLSYQ 310
Query: 149 EMFQLL 154
E L+
Sbjct: 311 EFVMLV 316
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 59.1 bits (143), Expect = 6e-11
Identities = 16/132 (12%), Positives = 37/132 (28%), Gaps = 12/132 (9%)
Query: 68 SFQGLDRVVFREL-LHNTFDLVTE---EILMERIFCAFDRLCDGVIHLDEWVLGLSCFLR 123
+ + L L V + + G E++
Sbjct: 66 CYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLENKGSEDFVEFLEFRLMLCY 125
Query: 124 GTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMD 183
+ + F D + + + EE + + + EDP +++D
Sbjct: 126 IYDFFELTVMFDEIDASGNMLVDEEEFKRAVPKLEAWGAKVEDPAA--------LFKELD 177
Query: 184 YDKDGKISFQDF 195
+ G ++F +F
Sbjct: 178 KNGTGSVTFDEF 189
Score = 46.0 bits (109), Expect = 2e-06
Identities = 14/89 (15%), Positives = 24/89 (26%), Gaps = 7/89 (7%)
Query: 128 ELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDED-PDEGVRDLVELALRKMDYDK 186
+ F +D N G + +E++ L D R + +
Sbjct: 48 QRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLEN 107
Query: 187 DGKISFQDF------QQSVTDEPLLLEAF 209
G F +F + D L F
Sbjct: 108 KGSEDFVEFLEFRLMLCYIYDFFELTVMF 136
Score = 35.3 bits (81), Expect = 0.008
Identities = 23/163 (14%), Positives = 43/163 (26%), Gaps = 25/163 (15%)
Query: 49 VSGLPPSNVTERYKGFSPFSFQGLDRVVFRELLHNTFDLVTEEILMER--IFCAFDRLCD 106
G S + + + + T E R +F FD+
Sbjct: 3 ACGSKGSTSDKGLASDKDGKKAKDRKEAWERIRQAIPREKTAEAKQRRIELFKKFDKNET 62
Query: 107 GVIHLDEWVLGLSCFL--RGTNEELI--------KFTFLIYDLNNDGFITREE--MFQLL 154
G + DE G L + K L L N G E F+L+
Sbjct: 63 GKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLENKGSEDFVEFLEFRLM 122
Query: 155 RNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 197
+ + ++D + + ++F++
Sbjct: 123 LCYIYD-------FFELTV----MFDEIDASGNMLVDEEEFKR 154
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 55.7 bits (135), Expect = 7e-11
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 127 EELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDP-DEGVRDLVELALRKMDYD 185
+ ++ F D N DG++T E+ + +D E L+ + D +
Sbjct: 6 KAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLI----KMADKN 61
Query: 186 KDGKISFQDF 195
DGKIS ++F
Sbjct: 62 SDGKISKEEF 71
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 58.1 bits (141), Expect = 1e-10
Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 12/110 (10%)
Query: 88 VTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITR 147
E + + I + D +G I E+V + E + F +D + G IT
Sbjct: 84 QIEAEV-DHILQSVDFDRNGYIEYSEFVTVCMDKQLLLSRERLLAAFQQFDSDGSGKITN 142
Query: 148 EEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 197
EE+ +L + + DE + L++ D + DG++ F++F +
Sbjct: 143 EELGRLFGVTEVD-------DETWHQV----LQECDKNNDGEVDFEEFVE 181
Score = 48.1 bits (115), Expect = 4e-07
Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 18/99 (18%)
Query: 125 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQD------EDPDEGVRDLVE 176
T EE + F D N DG + R+E+ + R + + V +++
Sbjct: 35 TLEETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQ 94
Query: 177 LALRKMDYDKDGKISFQDF------QQSVTDEPLLLEAF 209
+D+D++G I + +F +Q + LL AF
Sbjct: 95 ----SVDFDRNGYIEYSEFVTVCMDKQLLLSRERLLAAF 129
Score = 40.3 bits (95), Expect = 2e-04
Identities = 25/131 (19%), Positives = 44/131 (33%), Gaps = 22/131 (16%)
Query: 87 LVTEEILME--RIFCAFDRLCDGVIHLDEWVLGLSCFLRGT-----------NEELIKFT 133
L T E E +IF D DG + E + G ++ E +
Sbjct: 33 LTTLEETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHI 92
Query: 134 FLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQ 193
D + +G+I E F ++ Q E + A ++ D D GKI+ +
Sbjct: 93 LQSVDFDRNGYIEYSE-F----VTVCMDKQLLLSRERLLA----AFQQFDSDGSGKITNE 143
Query: 194 DFQQSVTDEPL 204
+ + +
Sbjct: 144 ELGRLFGVTEV 154
Score = 28.0 bits (63), Expect = 1.7
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 86 DLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFI 145
L++ E L+ F FD G I +E LG + ++E D NNDG +
Sbjct: 118 LLLSRERLLA-AFQQFDSDGSGKITNEE--LGRLFGVTEVDDETWHQVLQECDKNNDGEV 174
Query: 146 TREEMFQLLRN 156
EE ++++
Sbjct: 175 DFEEFVEMMQK 185
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 57.2 bits (138), Expect = 2e-10
Identities = 16/116 (13%), Positives = 37/116 (31%), Gaps = 20/116 (17%)
Query: 95 ERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEE---------LIKFTFLIYDLNNDGFI 145
+ + D D + +EW+ + ++ + + F F + D + D I
Sbjct: 67 DGLRKYADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNII 126
Query: 146 TREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTD 201
+ E + + I D D A + ++ + F + T+
Sbjct: 127 DKHEYSTVYMSYGIP---KSDCDA--------AFDTLSDGGKTMVTREIFARLWTE 171
Score = 51.4 bits (123), Expect = 2e-08
Identities = 21/120 (17%), Positives = 39/120 (32%), Gaps = 15/120 (12%)
Query: 93 LMERIFCAFDRLCDGVIHLDEWVLGLSCF---------------LRGTNEELIKFTFLIY 137
++ +D DGVI D++ L + R T + +
Sbjct: 14 ILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYA 73
Query: 138 DLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 197
D N D +T+EE ++ + S + E E + + D D I ++
Sbjct: 74 DENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYST 133
Score = 44.4 bits (105), Expect = 6e-06
Identities = 14/78 (17%), Positives = 22/78 (28%), Gaps = 6/78 (7%)
Query: 91 EILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEM 150
M +F D D +I E+ + G + F +TRE
Sbjct: 108 TKYMNFMFDVNDTSGDNIIDKHEYSTVYMSY--GIPKSDCDAAFDTLSDGGKTMVTREIF 165
Query: 151 FQLLRNSLISHPQDEDPD 168
+L +S D
Sbjct: 166 ARLWTEYFVS----NDRG 179
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 56.3 bits (136), Expect = 4e-10
Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 19/104 (18%)
Query: 106 DGVIHLDEWVLGLSCFLRGTNEE--------LIKFTFLIYDLNNDGFITREEMFQLLRNS 157
DG + ++++ + E ++K + D N DG I +E L
Sbjct: 72 DGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFAAWLTAL 131
Query: 158 LISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTD 201
+S + E A ++D + +G++S + +V D
Sbjct: 132 GMS---KAEAAE--------AFNQVDTNGNGELSLDELLTAVRD 164
Score = 52.1 bits (125), Expect = 9e-09
Identities = 17/119 (14%), Positives = 42/119 (35%), Gaps = 16/119 (13%)
Query: 94 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRG-----TNEELIKFTFLIY----------D 138
+++ F +D +G + ++ E+
Sbjct: 9 LKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAG 68
Query: 139 LNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 197
+ +DG +T E+ ++ N LI + + + +V+ + D + DG+I+ +F
Sbjct: 69 VGSDGSLTEEQFIRVTEN-LIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFAA 126
Score = 42.0 bits (99), Expect = 3e-05
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 93 LMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQ 152
+++ I D+ DG I+ DE+ L+ G ++ F D N +G ++ +E+
Sbjct: 103 VVKGIVGMCDKNADGQINADEFAAWLTAL--GMSKAEAAEAFNQVDTNGNGELSLDELLT 160
Query: 153 LLRNSLISHPQDEDPD 168
+R+ D +
Sbjct: 161 AVRDFHFG---RLDVE 173
Score = 28.2 bits (63), Expect = 1.5
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 180 RKMDYDKDGKISFQDFQQSVTDEPLLLEAFGQCLPSDAARQ 220
+ D+D +G + DF++ + EAFG+ + +
Sbjct: 14 DRWDFDGNGALERADFEKEAQH---IAEAFGKDAGAAEVQT 51
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 54.6 bits (131), Expect = 4e-10
Identities = 16/73 (21%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 134 FLIYDLNNDGFITREEMFQLLRNSL--ISHPQDEDPDEGVRD-----LVELALRKMDYDK 186
F+++D+N+DG + +E+ L L + P++E+ D + + E ++ +D ++
Sbjct: 26 FILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVDTNQ 85
Query: 187 DGKISFQDFQQSV 199
D ++ ++F S
Sbjct: 86 DRLVTLEEFLAST 98
Score = 26.8 bits (59), Expect = 2.6
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 127 EELIKFTFLIYDLNNDGFITREE 149
+ + D N D +T EE
Sbjct: 71 LRMREHVMKNVDTNQDRLVTLEE 93
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 56.4 bits (136), Expect = 5e-10
Identities = 17/119 (14%), Positives = 33/119 (27%), Gaps = 22/119 (18%)
Query: 94 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNE-----------ELIKFTFLIYDLNND 142
+ F + ++WV F E L + + D + D
Sbjct: 83 VRVFFLHKGVEPVNGLLREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGD 142
Query: 143 GFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTD 201
G + +E+ +++ + E K D DK GK+ +
Sbjct: 143 GTVDVDELKTMMKAFDVP---QEAAYT--------FFEKADTDKSGKLERTELVHLFRK 190
Score = 54.1 bits (130), Expect = 3e-09
Identities = 12/73 (16%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 125 TNEELIKFT--FLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKM 182
+ L + F +DL++DG + +E+ ++ E +RD V +
Sbjct: 31 HPKMLSRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHK 90
Query: 183 DYDKDGKISFQDF 195
+ + +D+
Sbjct: 91 GVEPVNGLLREDW 103
Score = 50.6 bits (121), Expect = 5e-08
Identities = 31/161 (19%), Positives = 59/161 (36%), Gaps = 21/161 (13%)
Query: 74 RVVFRELLHNTFDLVTEEIL-MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTN------ 126
R V + N DL + + + + F FD DG + +DE + + N
Sbjct: 17 RSVGNQWQFNVEDLHPKMLSRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQV 76
Query: 127 ---EELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDE--GVRDLVELALRK 181
+ ++ FL + + RE+ + R + + E E + L
Sbjct: 77 EKMRDAVRVFFLHKGVEPVNGLLREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDV 136
Query: 182 MDYDKDGKISFQDFQQSVTDEPLLLEAFGQCLPSDAARQSF 222
+D D DG + + + +++AF +P +AA F
Sbjct: 137 LDDDGDGTVDVDELKT-------MMKAFD--VPQEAAYTFF 168
Score = 41.0 bits (96), Expect = 9e-05
Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 5/81 (6%)
Query: 90 EEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREE 149
+L + D DG + +DE + F +E F D + G + R E
Sbjct: 126 IALLSNSYYDVLDDDGDGTVDVDELKTMMKAF--DVPQEAAYTFFEKADTDKSGKLERTE 183
Query: 150 MFQLLRNSLISHPQDEDPDEG 170
+ L R + DP
Sbjct: 184 LVHLFRKFWME---PYDPQWD 201
Score = 26.3 bits (58), Expect = 8.5
Identities = 7/50 (14%), Positives = 15/50 (30%), Gaps = 8/50 (16%)
Query: 180 RKMDYDKDGKISFQDFQQSVTDEPLLLEAFGQCL-PSDAARQSFLSTLQA 228
D D DGK+ + + Q + +D + ++
Sbjct: 43 DTFDLDSDGKMEMDEVLY-------WPDRMRQLVNATDEQVEKMRDAVRV 85
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein;
2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1
PDB: 1eg4_A
Length = 261
Score = 56.2 bits (135), Expect = 8e-10
Identities = 21/132 (15%), Positives = 49/132 (37%), Gaps = 5/132 (3%)
Query: 78 RELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIY 137
+E + + ++ + + +D G I + + G+ + E+ ++ F
Sbjct: 118 QEHNNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKTGIISLCKAHLEDKYRYLFKQV 177
Query: 138 DLNNDGFITREEMFQLLRNSL-ISHPQDEDPDEGVRDLVELALRKM--DYDKDGKISFQD 194
++ GF + + LL +S+ I E G +E ++R + +I
Sbjct: 178 A-SSTGFCDQRRLGLLLHDSIQIPRQLGEVASFG-GSNIEPSVRSCFQFANNKPEIEAAL 235
Query: 195 FQQSVTDEPLLL 206
F + EP +
Sbjct: 236 FLDWMRLEPQSM 247
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 53.4 bits (129), Expect = 1e-09
Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 120 CFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELAL 179
L + IK F I D + GFI EE+ L+N S + L
Sbjct: 34 VGLSSKTPDQIKKVFGILDQDKSGFIEEEELQLFLKN--FSSSARVLTSAETKAF----L 87
Query: 180 RKMDYDKDGKISFQDFQQ 197
D D DGKI ++FQ
Sbjct: 88 AAGDTDGDGKIGVEEFQS 105
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 55.4 bits (134), Expect = 1e-09
Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 6/123 (4%)
Query: 77 FRELLHNT-FDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFL 135
FR+ L L E E + +DR G + L+E++ L + E +I F
Sbjct: 59 FRQGLAKLGLVLDQAEA--EGVCRKWDRNGSGTLDLEEFLRALRPPMSQAREAVIAAAFA 116
Query: 136 IYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDY-DKDGKISFQD 194
D + DG +T +++ + +HP+ + +++ L D +KDG+++ +
Sbjct: 117 KLDRSGDGVVTVDDLRGVYSGR--AHPKVRSGEWTEDEVLRRFLDNFDSSEKDGQVTLAE 174
Query: 195 FQQ 197
FQ
Sbjct: 175 FQD 177
Score = 53.9 bits (130), Expect = 3e-09
Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 11/137 (8%)
Query: 90 EEIL-MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITRE 148
I + R F DR + DE+ GL+ ++ + +D N G + E
Sbjct: 34 SGIQGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLE 93
Query: 149 EMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEA 208
E + LR P + + + A K+D DG ++ D + +
Sbjct: 94 EFLRALR-----PPMSQAREAVIAA----AFAKLDRSGDGVVTVDDLRGVYSGRAHPKVR 144
Query: 209 FGQCLPSDAARQSFLST 225
G+ D + FL
Sbjct: 145 SGEWT-EDEVLRRFLDN 160
Score = 26.2 bits (58), Expect = 9.4
Identities = 19/91 (20%), Positives = 29/91 (31%), Gaps = 9/91 (9%)
Query: 90 EEILMERIFCAFDRLCDGVIHLDE-----WVLGLSCFLRG---TNEELIKFTFLIYDLNN 141
E ++ F DR DGV+ +D+ G +E L +F
Sbjct: 108 EAVIAA-AFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFLDNFDSSEK 166
Query: 142 DGFITREEMFQLLRNSLISHPQDEDPDEGVR 172
DG +T E S DE+ +
Sbjct: 167 DGQVTLAEFQDYYSGVSASMNTDEEFVAMMT 197
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 54.7 bits (132), Expect = 1e-09
Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 18/103 (17%)
Query: 106 DGVIHLDEWVLGLSCFLRGTNEE-------LIKFTFLIYDLNNDGFITREEMFQLLRNSL 158
D I +E+V G LR + + + D + DG +T + + L
Sbjct: 69 DQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADTARALTAFG 128
Query: 159 ISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTD 201
+ ++ + A +D D DGK+ + +
Sbjct: 129 VP---EDLARQ--------AAAALDTDGDGKVGETEIVPAFAR 160
Score = 51.3 bits (123), Expect = 2e-08
Identities = 33/144 (22%), Positives = 48/144 (33%), Gaps = 26/144 (18%)
Query: 94 MERIFCAFDRLCDGVIHLDEWVLGLS--CFLRGTNEELIKFTFLIY-------------D 138
+ F FD+ +G I ++ G + L D
Sbjct: 6 IAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIAD 65
Query: 139 LNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQS 198
+ D ITREE L + + E R + AL D D DG ++ D +
Sbjct: 66 RDGDQRITREEFVTGAVKRL--RDKPDRFAEMARPFLHAALGVADTDGDGAVTVADTAR- 122
Query: 199 VTDEPLLLEAFGQCLPSDAARQSF 222
L AFG +P D ARQ+
Sbjct: 123 ------ALTAFG--VPEDLARQAA 138
Score = 50.1 bits (120), Expect = 5e-08
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 6/75 (8%)
Query: 127 EELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEG--VRDLVELALRKM-- 182
E I F +D + +G I R + + L D G + E + +
Sbjct: 3 ERRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAG 62
Query: 183 --DYDKDGKISFQDF 195
D D D +I+ ++F
Sbjct: 63 IADRDGDQRITREEF 77
Score = 39.7 bits (93), Expect = 2e-04
Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
Query: 91 EILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEM 150
+ D DG + + + L+ F G E+L + D + DG + E+
Sbjct: 97 RPFLHAALGVADTDGDGAVTVADTARALTAF--GVPEDLARQAAAALDTDGDGKVGETEI 154
Query: 151 FQLLR 155
Sbjct: 155 VPAFA 159
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 54.2 bits (130), Expect = 2e-09
Identities = 14/112 (12%), Positives = 30/112 (26%), Gaps = 20/112 (17%)
Query: 95 ERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTN---------EELIKFTFLIYDLNNDGFI 145
+ D D V+ +E++ + + I F F D++ DG +
Sbjct: 63 RDLKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIV 122
Query: 146 TREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 197
EE +N + V + +++
Sbjct: 123 DLEEFQNYCKN--FQLQCAD---------VPAVYNVITDGGKVTFDLNRYKE 163
Score = 53.8 bits (129), Expect = 3e-09
Identities = 19/126 (15%), Positives = 47/126 (37%), Gaps = 19/126 (15%)
Query: 91 EILMERIFCAFDRLCD----GVIHLDEWVLGLSCF---------------LRGTNEELIK 131
+ ++I FD D G I +++ ++ + ++ + E+ +
Sbjct: 4 DFQKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWR 63
Query: 132 FTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKIS 191
D+N D ++ EE + ++ + D ++ + + MD DG +
Sbjct: 64 DLKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVD 123
Query: 192 FQDFQQ 197
++FQ
Sbjct: 124 LEEFQN 129
Score = 41.8 bits (98), Expect = 4e-05
Identities = 11/77 (14%), Positives = 22/77 (28%), Gaps = 4/77 (5%)
Query: 91 EILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEM 150
+ + +F D DG++ L+E+ F + + +
Sbjct: 104 QNRIPFLFKGMDVSGDGIVDLEEFQNYCKNF--QLQCADVPAVYNVITDGGKVTFDLNRY 161
Query: 151 FQLLRNSLISHPQDEDP 167
+L L S D
Sbjct: 162 KELYYRLLTS--PAADA 176
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 52.9 bits (128), Expect = 2e-09
Identities = 23/127 (18%), Positives = 51/127 (40%), Gaps = 21/127 (16%)
Query: 74 RVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGT---NEELI 130
+ + E++L + IF + D +G I +E+ ++ +
Sbjct: 23 KAFVSKKRAI----KNEQLL-QLIFKSIDADGNGEIDQNEFAKFYGSIQGQDLSDDKIGL 77
Query: 131 KFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKI 190
K + + D++ DG +T+EE+ + G+ + E + K D + DG I
Sbjct: 78 KVLYKLMDVDGDGKLTKEEVTSFFKKH------------GIEKVAEQ-VMKADANGDGYI 124
Query: 191 SFQDFQQ 197
+ ++F +
Sbjct: 125 TLEEFLE 131
Score = 48.7 bits (117), Expect = 8e-08
Identities = 15/90 (16%), Positives = 35/90 (38%), Gaps = 18/90 (20%)
Query: 129 LIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDG 188
+ + F D+N DG ++ EE+ + + ++ ++ + + +D D +G
Sbjct: 1 MAEALFKEIDVNGDGAVSYEEVKAFVS-KKRAIKNEQL----LQLIFK----SIDADGNG 51
Query: 189 KISFQDF---------QQSVTDEPLLLEAF 209
+I +F Q D+ L +
Sbjct: 52 EIDQNEFAKFYGSIQGQDLSDDKIGLKVLY 81
Score = 40.6 bits (96), Expect = 7e-05
Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 6/105 (5%)
Query: 93 LMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQ 152
+ E +F D DG + +E +S NE+L++ F D + +G I + E
Sbjct: 1 MAEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFA- 59
Query: 153 LLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 197
Q +D + L + MD D DGK++ ++
Sbjct: 60 ----KFYGSIQGQDLSDDKIGLKV-LYKLMDVDGDGKLTKEEVTS 99
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 54.1 bits (131), Expect = 2e-09
Identities = 19/122 (15%), Positives = 47/122 (38%), Gaps = 12/122 (9%)
Query: 74 RVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFT 133
+++ + + ++ D G IH +++ +E+
Sbjct: 80 LDGLKKIGYQ----KIPPDI-HQVLRDIDSNASGQIHYTDFLAATIDKQTYLKKEVCLIP 134
Query: 134 FLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQ 193
F +D++ +G I+ EE L+ + + ++ L+++D + DG+I F
Sbjct: 135 FKFFDIDGNGKISVEE----LKRIFGRDDIENPLID---KAIDSLLQEVDLNGDGEIDFH 187
Query: 194 DF 195
+F
Sbjct: 188 EF 189
Score = 50.7 bits (122), Expect = 4e-08
Identities = 16/93 (17%), Positives = 40/93 (43%), Gaps = 17/93 (18%)
Query: 125 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKM 182
+ E+ ++ F+ D++N G ++ +E+ L+ + D + ++ +
Sbjct: 52 CDVEINNLRNIFIALDVDNSGTLSSQEILDGLK-KIGYQKIPPD----IHQVLR----DI 102
Query: 183 DYDKDGKISFQDF------QQSVTDEPLLLEAF 209
D + G+I + DF +Q+ + + L F
Sbjct: 103 DSNASGQIHYTDFLAATIDKQTYLKKEVCLIPF 135
Score = 27.9 bits (63), Expect = 1.9
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 89 TEEILMERIFCAFDRLCDGVIHLDEW--VLGLSCFLRGTNEELIKFTFLIYDLNNDGFIT 146
+E+ + F FD +G I ++E + G ++ I DLN DG I
Sbjct: 127 KKEVCLI-PFKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEVDLNGDGEID 185
Query: 147 REEMFQLLRN 156
E ++
Sbjct: 186 FHEFMLMMSK 195
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 51.5 bits (124), Expect = 5e-09
Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 8/92 (8%)
Query: 106 DGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDE 165
+ + L + + IK F + D + GFI +E+ L+ S
Sbjct: 22 ADSFNYKAFFA--KVGLTAKSADDIKKAFFVIDQDKSGFIEEDELKLFLQV--FSAGARA 77
Query: 166 DPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 197
D + L+ D D DG I ++
Sbjct: 78 LTDAETKAF----LKAGDSDGDGAIGVDEWAA 105
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 52.7 bits (127), Expect = 6e-09
Identities = 22/112 (19%), Positives = 43/112 (38%), Gaps = 20/112 (17%)
Query: 94 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQL 153
+ RI A D G I E+ + + +K F D + DG+I++ ++ L
Sbjct: 75 INRILQALDINDRGNITYTEF-MAGCYRWKNIESTFLKAAFNKIDKDEDGYISKSDIVSL 133
Query: 154 LRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDG--------KISFQDFQQ 197
+ + ++ + + + + K G KISFQ+F+
Sbjct: 134 VHDKVLD-------NNDIDNF----FLSVHSIKKGIPREHIINKISFQEFKD 174
Score = 48.8 bits (117), Expect = 1e-07
Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 18/95 (18%)
Query: 122 LRGTNEEL--IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELAL 179
L N + I F D N++G ++ E++ +L + + +++
Sbjct: 31 LSVINNHIKYINELFYKLDTNHNGSLSHREIYTVLASV-------GIKKWDINRILQ--- 80
Query: 180 RKMDYDKDGKISFQDF-----QQSVTDEPLLLEAF 209
+D + G I++ +F + + L AF
Sbjct: 81 -ALDINDRGNITYTEFMAGCYRWKNIESTFLKAAF 114
Score = 40.4 bits (95), Expect = 1e-04
Identities = 30/151 (19%), Positives = 56/151 (37%), Gaps = 16/151 (10%)
Query: 55 SNVTERYKGFSPFSFQGLDRVVFRELLHNTFDLVTEEIL-MERIFCAFDRLCDGVIHLDE 113
NV K + + ++ ++ + ++ I + +F D +G + E
Sbjct: 4 PNVLNNMKSYM--KHSNIRNIIIN-IMAHELSVINNHIKYINELFYKLDTNHNGSLSHRE 60
Query: 114 WVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRD 173
L+ G + I D+N+ G IT E F + ++ +
Sbjct: 61 IYTVLASV--GIKKWDINRILQALDINDRGNITYTE-FM----AGCYRWKNIESTF---- 109
Query: 174 LVELALRKMDYDKDGKISFQDFQQSVTDEPL 204
++ A K+D D+DG IS D V D+ L
Sbjct: 110 -LKAAFNKIDKDEDGYISKSDIVSLVHDKVL 139
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 51.4 bits (124), Expect = 2e-08
Identities = 24/113 (21%), Positives = 43/113 (38%), Gaps = 13/113 (11%)
Query: 85 FDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGF 144
+L EI + A D G I E++ + E+ + F +D + G+
Sbjct: 58 ANLKESEI--LDLMQAADVDNSGTIDYKEFIAATLHLNKIEREDHLFAAFTYFDKDGSGY 115
Query: 145 ITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 197
IT +E+ Q + D + +L+ D D DG+I + +F
Sbjct: 116 ITPDELQQACEEFGVE-------DVRIEELMRDV----DQDNDGRIDYNEFVA 157
Score = 49.8 bits (120), Expect = 5e-08
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 17/93 (18%)
Query: 125 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKM 182
+ EE+ +K F + D + G IT EE+ L+ + ++ ++ + + DL++
Sbjct: 22 SEEEIAGLKEMFNMIDADKSGQITFEELKAGLK-RVGANLKESE----ILDLMQ----AA 72
Query: 183 DYDKDGKISFQDF------QQSVTDEPLLLEAF 209
D D G I +++F + E L AF
Sbjct: 73 DVDNSGTIDYKEFIAATLHLNKIEREDHLFAAF 105
Score = 37.9 bits (89), Expect = 7e-04
Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 25/118 (21%)
Query: 89 TEEILME--RIFCAFDRLCDGVIHLDEWVLGLSCFLRG-----TNEELIKFTFLI--YDL 139
+EE + +F D G I +E L L+ E++ L+ D+
Sbjct: 22 SEEEIAGLKEMFNMIDADKSGQITFEE----LKAGLKRVGANLKESEILD---LMQAADV 74
Query: 140 NNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 197
+N G I +E F + H + ++ + A D D G I+ + QQ
Sbjct: 75 DNSGTIDYKE-F----IAATLHLNKIEREDHLFA----AFTYFDKDGSGYITPDELQQ 123
Score = 30.6 bits (70), Expect = 0.27
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 86 DLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFI 145
+ E+ L F FD+ G I DE L +C G + I+ D +NDG I
Sbjct: 94 KIEREDHLFA-AFTYFDKDGSGYITPDE--LQQACEEFGVEDVRIEELMRDVDQDNDGRI 150
Query: 146 TREEMFQLLR 155
E +++
Sbjct: 151 DYNEFVAMMQ 160
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 51.5 bits (124), Expect = 2e-08
Identities = 23/122 (18%), Positives = 49/122 (40%), Gaps = 16/122 (13%)
Query: 74 RVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFT 133
+ + + + E + + + A D G I E++ + EE +
Sbjct: 33 KDGLKRVGSE----LMESEI-KDLMDAADIDKSGTIDYGEFIAATVHLNKLEREENLVSA 87
Query: 134 FLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQ 193
F +D + G+IT +E+ Q ++ + D + D+++ D D DG+I +
Sbjct: 88 FSYFDKDGSGYITLDEIQQACKDFGLD-------DIHIDDMIKEI----DQDNDGQIDYG 136
Query: 194 DF 195
+F
Sbjct: 137 EF 138
Score = 46.1 bits (110), Expect = 1e-06
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 17/93 (18%)
Query: 125 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKM 182
+ EE+ +K F + D +N G IT +E+ L+ + S + + ++DL++
Sbjct: 5 SEEEIGGLKELFKMIDTDNSGTITFDELKDGLK-RVGSELMESE----IKDLMD----AA 55
Query: 183 DYDKDGKISFQDF------QQSVTDEPLLLEAF 209
D DK G I + +F + E L+ AF
Sbjct: 56 DIDKSGTIDYGEFIAATVHLNKLEREENLVSAF 88
Score = 41.1 bits (97), Expect = 9e-05
Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 4/106 (3%)
Query: 86 DLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFI 145
L EE L+ F FD+ G I LDE + +C G ++ I D +NDG I
Sbjct: 77 KLEREENLVS-AFSYFDKDGSGYITLDE--IQQACKDFGLDDIHIDDMIKEIDQDNDGQI 133
Query: 146 TREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKIS 191
E ++R + +L + AL +D + I
Sbjct: 134 DYGEFAAMMRKRKGNGGIGRRTMRKTLNLRD-ALGLVDNGSNQVIE 178
Score = 38.7 bits (91), Expect = 4e-04
Identities = 30/120 (25%), Positives = 42/120 (35%), Gaps = 26/120 (21%)
Query: 87 LVTEEI--LMERIFCAFDRLCDGVIHLDEWVLGLSCFLRG-----TNEELIKFTFLI--Y 137
L EEI L E +F D G I DE L L+ E+ L+
Sbjct: 4 LSEEEIGGLKE-LFKMIDTDNSGTITFDE----LKDGLKRVGSELMESEIKD---LMDAA 55
Query: 138 DLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 197
D++ G I E F + H + +E + A D D G I+ + QQ
Sbjct: 56 DIDKSGTIDYGE-F----IAATVHLNKLEREENLVS----AFSYFDKDGSGYITLDEIQQ 106
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 49.2 bits (118), Expect = 3e-08
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 122 LRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRK 181
L+ + + +K F I D + GFI +E+ +L+ S +D E + L+
Sbjct: 35 LKKKSADDVKKVFHILDKDKSGFIEEDELGSILKG-FSSDARDLSAKE-TKTLMAAG--- 89
Query: 182 MDYDKDGKISFQDFQQ 197
D D DGKI ++F
Sbjct: 90 -DKDGDGKIGVEEFST 104
Score = 26.1 bits (58), Expect = 5.5
Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 9/95 (9%)
Query: 69 FQGLDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRG---- 124
F D ++ ++++F D+ G I DE L F
Sbjct: 18 FTAADSFDHKKFFQMVGLKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDL 77
Query: 125 TNEELIKFTFLI--YDLNNDGFITREEMFQLLRNS 157
+ +E L+ D + DG I EE L+ S
Sbjct: 78 SAKETKT---LMAAGDKDGDGKIGVEEFSTLVAES 109
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 49.5 bits (119), Expect = 3e-08
Identities = 23/112 (20%), Positives = 47/112 (41%), Gaps = 11/112 (9%)
Query: 86 DLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFI 145
DL+ + + + + A +G + ++ L+ + +K F D + GFI
Sbjct: 5 DLLKADDIKKAL-DAVKA--EGSFNHKKFFA--LVGLKAMSANDVKKVFKAIDADASGFI 59
Query: 146 TREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 197
EE+ +L++ + + D + ++ A D D DGKI +F+
Sbjct: 60 EEEELKFVLKS--FAADGRDLTDAETKAFLKAA----DKDGDGKIGIDEFET 105
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 49.2 bits (118), Expect = 4e-08
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 122 LRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRK 181
+ + +K F I D + GFI +E+ L+ S + E + L
Sbjct: 35 MSKKSSSQLKEIFRILDNDQSGFIEEDELKYFLQR-FESGARVLTASE-TKTF----LAA 88
Query: 182 MDYDKDGKISFQDFQQ 197
D+D DGKI ++FQ+
Sbjct: 89 ADHDGDGKIGAEEFQE 104
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 48.7 bits (117), Expect = 4e-08
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
Query: 125 TNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDY 184
+ +++ K F + D + GFI +E+ L+N S D + L D
Sbjct: 39 SLDDVKKA-FYVIDQDKSGFIEEDELKLFLQN--FSPSARALTDAETKAF----LADGDK 91
Query: 185 DKDGKISFQDFQQ 197
D DG I +F
Sbjct: 92 DGDGMIGVDEFAA 104
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 50.1 bits (120), Expect = 7e-08
Identities = 18/139 (12%), Positives = 35/139 (25%), Gaps = 20/139 (14%)
Query: 70 QGLDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTN--- 126
+ +L ++ +E F I +++ G
Sbjct: 44 SKASDDICAKLEATPEQTKRHQVCVEAFFRGCGMEYGKEIAFPQFLDGWKQLATSELKKW 103
Query: 127 --------EELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELA 178
E F I+D + G IT +E + ++ E
Sbjct: 104 ARNEPTLIREWGDAVFDIFDKDGSGTITLDE----WKAYGKISGISPSQED-----CEAT 154
Query: 179 LRKMDYDKDGKISFQDFQQ 197
R D D G + + +
Sbjct: 155 FRHCDLDNAGDLDVDEMTR 173
Score = 39.3 bits (92), Expect = 4e-04
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 3/74 (4%)
Query: 125 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLRNSLI-SHPQDEDPDEGVRDLVELALRK 181
+ K F D+N +G IT +E+ + + + + + VE R
Sbjct: 15 NPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRG 74
Query: 182 MDYDKDGKISFQDF 195
+ +I+F F
Sbjct: 75 CGMEYGKEIAFPQF 88
Score = 33.2 bits (76), Expect = 0.034
Identities = 18/129 (13%), Positives = 37/129 (28%), Gaps = 20/129 (15%)
Query: 86 DLVTEEILME--RIFCAFDRLCDGVIHLDEWVLGLSCFL------RGTNEELIKFTFLIY 137
D + +F D +G I LDE V S + + + +
Sbjct: 12 DFDNPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQ---VCV 68
Query: 138 -------DLNNDGFITREEMFQLLRNSLISHPQDEDPDE--GVRDLVELALRKMDYDKDG 188
+ I + + S + +E +R+ + D D G
Sbjct: 69 EAFFRGCGMEYGKEIAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSG 128
Query: 189 KISFQDFQQ 197
I+ +++
Sbjct: 129 TITLDEWKA 137
Score = 31.3 bits (71), Expect = 0.17
Identities = 19/81 (23%), Positives = 32/81 (39%)
Query: 86 DLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFI 145
+ + +F FD+ G I LDEW ++E + TF DL+N G +
Sbjct: 107 EPTLIREWGDAVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLDNAGDL 166
Query: 146 TREEMFQLLRNSLISHPQDED 166
+EM + + + D
Sbjct: 167 DVDEMTRQHLGFWYTLDPEAD 187
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 48.3 bits (116), Expect = 7e-08
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 8/92 (8%)
Query: 106 DGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDE 165
G + L+G + +K F I D + GFI EE+ +L+ S +
Sbjct: 21 PGTFDYKRFFH--LVGLKGKTDAQVKEVFEILDKDQSGFIEEEELKGVLKG--FSAHGRD 76
Query: 166 DPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 197
D + L L D D DGKI +F +
Sbjct: 77 LNDTETKAL----LAAGDSDHDGKIGADEFAK 104
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 49.8 bits (119), Expect = 8e-08
Identities = 20/139 (14%), Positives = 35/139 (25%), Gaps = 20/139 (14%)
Query: 70 QGLDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNE-- 127
+V L + +E F ++ G E
Sbjct: 40 YKASDIVINNLGATPEQAKRHKDAVEAFFGGAGMKYGVETDWPAYIEGWKKLATDELEKY 99
Query: 128 ---------ELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELA 178
F I D + +G IT +E + ED +E
Sbjct: 100 AKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKAYTKA-AGIIQSSEDCEE--------T 150
Query: 179 LRKMDYDKDGKISFQDFQQ 197
R D D+ G++ + +
Sbjct: 151 FRVCDIDESGQLDVDEMTR 169
Score = 42.5 bits (100), Expect = 3e-05
Identities = 22/143 (15%), Positives = 47/143 (32%), Gaps = 23/143 (16%)
Query: 94 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRG------TNEELIKFTFLIY----DLNNDG 143
+ +F D +G I LDE V S + + K + +
Sbjct: 18 HKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAGMKYGV 77
Query: 144 FITREE----MFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSV 199
+L + L + ++E +R + +D D++G I+ +++
Sbjct: 78 ETDWPAYIEGWKKLATDELEKYAKNE--PTLIRIWGDALFDIVDKDQNGAITLDEWKA-- 133
Query: 200 TDEPLLLEAFGQCLPSDAARQSF 222
+A G S+ ++F
Sbjct: 134 -----YTKAAGIIQSSEDCEETF 151
Score = 39.8 bits (93), Expect = 2e-04
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 4/80 (5%)
Query: 90 EEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREE 149
I + +F D+ +G I LDEW + E + TF + D++ G + +E
Sbjct: 107 IRIWGDALFDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDE 166
Query: 150 MFQLLRNSLISHPQDEDPDE 169
M + + DP
Sbjct: 167 MTRQHLGFWYT----MDPAC 182
Score = 39.4 bits (92), Expect = 3e-04
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 4/77 (5%)
Query: 123 RGTNEELI---KFTFLIYDLNNDGFITREEMFQLL-RNSLISHPQDEDPDEGVRDLVELA 178
N I K F D+N++G I+ +EM + + + + +D VE
Sbjct: 8 DFDNPRWIGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAF 67
Query: 179 LRKMDYDKDGKISFQDF 195
+ + +
Sbjct: 68 FGGAGMKYGVETDWPAY 84
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 46.8 bits (112), Expect = 1e-07
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 10/81 (12%)
Query: 127 EELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDK 186
+ ++ F +D N DG I+ E+ LR + V+ ++ ++D D
Sbjct: 2 ADDMERIFKRFDTNGDGKISLSELTDALRT------LGSTSADEVQRMM----AEIDTDG 51
Query: 187 DGKISFQDFQQSVTDEPLLLE 207
DG I F +F P L++
Sbjct: 52 DGFIDFNEFISFCNANPGLMK 72
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 46.8 bits (112), Expect = 2e-07
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 121 FLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALR 180
++R +EE I F ++D N DG I +E + + ++ D V + ++ A
Sbjct: 1 WVRQDDEEEILRAFKVFDANGDGVIDFDE----FKFIMQKVGEEPLTDAEVEEAMKEA-- 54
Query: 181 KMDYDKDGKISFQDF 195
D D +G I +F
Sbjct: 55 --DEDGNGVIDIPEF 67
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 47.3 bits (113), Expect = 2e-07
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 119 SCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELA 178
+ L + +K F D + G++ +E+ L+ S ++ E + L++ A
Sbjct: 32 TSGLSKMSASQVKDIFRFIDNDQSGYLDGDELKYFLQK-FQSDARELTESE-TKSLMDAA 89
Query: 179 LRKMDYDKDGKISFQDFQQ 197
D D DGKI +FQ+
Sbjct: 90 ----DNDGDGKIGADEFQE 104
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 46.6 bits (111), Expect = 2e-07
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 11/62 (17%)
Query: 134 FLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQ 193
F D N G + REE L P + E +++D D+DG I+FQ
Sbjct: 33 FAACDANRSGRLEREEFRALCTEL------RVRPAD-----AEAVFQRLDADRDGAITFQ 81
Query: 194 DF 195
+F
Sbjct: 82 EF 83
Score = 35.8 bits (83), Expect = 0.001
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Query: 94 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQL 153
+ +F A D G + +E C + F D + DG IT +E +
Sbjct: 29 LRSVFAACDANRSGRLEREE--FRALCTELRVRPADAEAVFQRLDADRDGAITFQEFARG 86
Query: 154 LRNSL 158
SL
Sbjct: 87 FLGSL 91
Score = 26.2 bits (58), Expect = 4.0
Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 145 ITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 197
+ R +L D D +E + L D ++ G++ ++F+
Sbjct: 1 MHHHHHHSSGRENLYFQGADGDGEE-LARLRS-VFAACDANRSGRLEREEFRA 51
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 47.1 bits (112), Expect = 2e-07
Identities = 11/71 (15%), Positives = 25/71 (35%), Gaps = 9/71 (12%)
Query: 125 TNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDY 184
++ I F +D I+REE + + ++ + +M
Sbjct: 21 SHYHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQ---------FDRLWNEMPV 71
Query: 185 DKDGKISFQDF 195
+ G++ + DF
Sbjct: 72 NAKGRLKYPDF 82
Score = 34.8 bits (80), Expect = 0.005
Identities = 12/74 (16%), Positives = 27/74 (36%), Gaps = 1/74 (1%)
Query: 77 FRELLHNTFDLVTEEIL-MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFL 135
R++L VT + + F FD + I +E+ + ++ +E +
Sbjct: 8 DRDILARLHKAVTSHYHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWN 67
Query: 136 IYDLNNDGFITREE 149
+N G + +
Sbjct: 68 EMPVNAKGRLKYPD 81
Score = 27.1 bits (60), Expect = 2.0
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 178 ALRKMDYDKDGKISFQDFQQ 197
D K IS ++F+
Sbjct: 29 EFENFDTMKTNTISREEFRA 48
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 45.2 bits (108), Expect = 3e-07
Identities = 15/64 (23%), Positives = 28/64 (43%)
Query: 93 LMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQ 152
+ E +F D DG + +E +S NE+L++ F D + +G I + E +
Sbjct: 1 MAEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAK 60
Query: 153 LLRN 156
+
Sbjct: 61 FYGS 64
Score = 44.1 bits (105), Expect = 9e-07
Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 9/69 (13%)
Query: 129 LIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDG 188
+ + F D+N DG ++ EE+ + + ++L + +D D +G
Sbjct: 1 MAEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQL---------LQLIFKSIDADGNG 51
Query: 189 KISFQDFQQ 197
+I +F +
Sbjct: 52 EIDQNEFAK 60
Score = 29.5 bits (67), Expect = 0.15
Identities = 6/49 (12%), Positives = 18/49 (36%), Gaps = 7/49 (14%)
Query: 174 LVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAFGQCLPSDAARQSF 222
+ E +++D + DG +S+++ + + + F
Sbjct: 1 MAEALFKEIDVNGDGAVSYEEVKA-------FVSKKRAIKNEQLLQLIF 42
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 49.1 bits (117), Expect = 4e-07
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 19/130 (14%)
Query: 74 RVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTN--EELIK 131
V R L N TE L + + D +G I E++ ++ ++ T+ EE+ +
Sbjct: 335 GTVMRSLGQN----PTEAELQD-MINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIRE 389
Query: 132 FTFLIYDLNNDGFITREEMFQLLRNSLISHPQDED-PDEGVRDLVELALRKMDYDKDGKI 190
F ++D + +G+I+ E+ ++ N E DE V +++ A D D DG++
Sbjct: 390 -AFRVFDKDGNGYISAAELRHVMTNL------GEKLTDEEVDEMIREA----DIDGDGQV 438
Query: 191 SFQDFQQSVT 200
++++F Q +T
Sbjct: 439 NYEEFVQMMT 448
Score = 48.7 bits (116), Expect = 4e-07
Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 24/138 (17%)
Query: 69 FQGLDRVVFRELLHNTFDLVTEEILME--RIFCAFDRLCDGVIHLDEWVLGLSCFLRG-- 124
F+ ++ +L +NT D +TEE + E F FD+ DG I E L +R
Sbjct: 287 FKEDGNILGHKLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKE----LGTVMRSLG 342
Query: 125 ---TNEELIKFTFLI--YDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELAL 179
T EL +I D + +G I E ++ + +D D +E +R+ A
Sbjct: 343 QNPTEAELQD---MINEVDADGNGTIDFPEFLTMMARKM----KDTDSEEEIRE----AF 391
Query: 180 RKMDYDKDGKISFQDFQQ 197
R D D +G IS + +
Sbjct: 392 RVFDKDGNGYISAAELRH 409
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 45.7 bits (109), Expect = 5e-07
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 10/78 (12%)
Query: 123 RGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKM 182
+ EE+ + F + D + +G+I+ E+ ++ N L DE+ DE +R+
Sbjct: 25 TDSEEEIRE-AFRVEDKDGNGYISAAELRHVMTN-LGEKLTDEEVDEMIREA-------- 74
Query: 183 DYDKDGKISFQDFQQSVT 200
D D DG++++++F Q +T
Sbjct: 75 DIDGDGQVNYEEFVQMMT 92
>3a8r_A Putative uncharacterized protein; EF-hand, membrane,
oxidoreductase, transmembrane, calcium BI protein; 2.40A
{Oryza sativa japonica group}
Length = 179
Score = 47.4 bits (112), Expect = 5e-07
Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 15/130 (11%)
Query: 95 ERIFCAFDR---LCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMF 151
++F + R + V+ DE + ++ F + D N DG +T EE+
Sbjct: 62 VQMFDSLARKRGIVKQVLTKDELKDFYEQLTDQGFDNRLRTFFDMVDKNADGRLTAEEVK 121
Query: 152 QLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAFGQ 211
+++ S ++ + E + L + ++D G I +D E LLL++
Sbjct: 122 EIIALSASANKLSK-IKERADEYTALIMEELDPTNLGYIEMEDL------EALLLQS--- 171
Query: 212 CLPSDAARQS 221
PS+AA +S
Sbjct: 172 --PSEAAARS 179
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 46.4 bits (110), Expect = 6e-07
Identities = 16/107 (14%), Positives = 39/107 (36%), Gaps = 12/107 (11%)
Query: 91 EILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEM 150
+L + + + + + L E K ++ +DLN +G I +
Sbjct: 14 GLLKAQQEERLEGINKQFLDDPK--YSNDEDLPSKLEAF-KVKYMEFDLNGNGDIDIMSL 70
Query: 151 FQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 197
++L + P+ ++ L+ R++ + S+ DF +
Sbjct: 71 KRMLEK--LGVPKTH---LELKRLI----REVSSGSEETFSYSDFLR 108
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 46.4 bits (111), Expect = 6e-07
Identities = 21/132 (15%), Positives = 48/132 (36%), Gaps = 19/132 (14%)
Query: 75 VVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTN------EE 128
R + +N T +++ + I + LD+ + + + E
Sbjct: 28 DYLRAIGYN----PTNQLVQDIINADSSLRDASSLTLDQITGLIEVNEKELDATTKAKTE 83
Query: 129 LIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDG 188
F ++D + G ++ + LR L + E V+ L+ ++ D +G
Sbjct: 84 DFVKAFQVFDKESTGKVSVGD----LRYMLTGLGEKLTDAE-----VDELLKGVEVDSNG 134
Query: 189 KISFQDFQQSVT 200
+I ++ F + V
Sbjct: 135 EIDYKKFIEDVL 146
Score = 45.7 bits (109), Expect = 1e-06
Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 12/105 (11%)
Query: 98 FCAFDRLCDGVIHLDEWVLGLSCFLRG-----TNEELIKFTFLIYDLNNDGFITREEMFQ 152
F FD+ G I D L +LR TN+ + L + +T +++
Sbjct: 10 FTLFDKKGQGAIAKDS----LGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQITG 65
Query: 153 LLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 197
L+ + D D V+ A + D + GK+S D +
Sbjct: 66 LI--EVNEKELDATTKAKTEDFVK-AFQVFDKESTGKVSVGDLRY 107
Score = 38.0 bits (89), Expect = 6e-04
Identities = 8/66 (12%), Positives = 23/66 (34%), Gaps = 8/66 (12%)
Query: 130 IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGK 189
K F ++D G I ++ + LR ++ +P ++ + ++
Sbjct: 6 NKDIFTLFDKKGQGAIAKDSLGDYLR-AIGYNPTNQ-------LVQDIINADSSLRDASS 57
Query: 190 ISFQDF 195
++
Sbjct: 58 LTLDQI 63
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.5 bits (115), Expect = 7e-07
Identities = 49/252 (19%), Positives = 83/252 (32%), Gaps = 60/252 (23%)
Query: 4 HLMFQLLPLSFRQEVETLCKIFKKLLNSSSNAGVPISTSTPVVVQVSGLPPSNVTERYKG 63
H + L + ++ K + + A P + S L + +
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN-----SALFRAVGEGNAQL 156
Query: 64 FSPFSFQGLDRVVFREL--LHNTF-----DLVTE--EILMERIFCAFD--RLCDGVIHLD 112
+ F QG F EL L+ T+ DL+ E L E I D ++ +++
Sbjct: 157 VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL 216
Query: 113 EWVLG--------------LSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSL 158
EW+ +SC L G +I+ + GF T E+ L+
Sbjct: 217 EWLENPSNTPDKDYLLSIPISCPLIG----VIQLAHYVVTAKLLGF-TPGELRSYLK-GA 270
Query: 159 ISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLL--------EAFG 210
H Q G+ + +A+ + D S++ F SV +L EA+
Sbjct: 271 TGHSQ------GL--VTAVAIAETD-------SWESFFVSVRKAITVLFFIGVRCYEAYP 315
Query: 211 QC-LPSDAARQS 221
LP S
Sbjct: 316 NTSLPPSILEDS 327
Score = 35.0 bits (80), Expect = 0.017
Identities = 17/114 (14%), Positives = 33/114 (28%), Gaps = 39/114 (34%)
Query: 71 GLDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLS---CFLRGTNE 127
G+D L+ T + ++R D H + G S +
Sbjct: 1632 GMD-------LYKTSKAAQD---------VWNR-ADN--HFKD-TYGFSILDIVINNPVN 1671
Query: 128 ELIKFT------------FLIYDLNNDGFITREEMFQLLRNSLIS----HPQDE 165
I F +I++ DG + E++F+ + S +
Sbjct: 1672 LTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGL 1725
Score = 33.1 bits (75), Expect = 0.074
Identities = 49/279 (17%), Positives = 83/279 (29%), Gaps = 86/279 (30%)
Query: 8 QLLPLSFRQEVETLCKIFKK-------LLNSSSNAGVPISTSTPV------VVQ------ 48
L L + K+F + L N S+ S P+ V+Q
Sbjct: 194 TLSELI--RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVV 251
Query: 49 ---VSGLPPSNVTERYKGFSPFSFQGLDRVVFRELLHNTFDLVTEEILMERIFCAFDRLC 105
+ G P + KG + S QGL + I + +F
Sbjct: 252 TAKLLGFTPGELRSYLKGATGHS-QGL--------------VTAVAIAETDSWESFFVSV 296
Query: 106 DGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDL-NNDGF---------ITREEMFQLLR 155
I + ++ G+ C + + L L NN+G +T+E++ +
Sbjct: 297 RKAITVLFFI-GVRC-YEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN 354
Query: 156 --NSLISHPQDED--------PDEGV-----RDL--VELALRKM----DYDKDGKISFQD 194
NS P + V + L + L LRK D+ +I F +
Sbjct: 355 KTNS--HLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS-RIPFSE 411
Query: 195 ----FQQS---VTD---EPLLLEAFGQCLPSDAARQSFL 223
F V LL+ A + D + +
Sbjct: 412 RKLKFSNRFLPVASPFHSHLLVPAS-DLINKDLVKNNVS 449
Score = 30.4 bits (68), Expect = 0.66
Identities = 14/100 (14%), Positives = 30/100 (30%), Gaps = 23/100 (23%)
Query: 130 IKFTFLI-YDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDG 188
++ L+ +E+ ++L D++P EL + + Y
Sbjct: 16 LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEP----TTPAELVGKFLGY---- 67
Query: 189 KIS--FQDFQQSVTDEPL--LLEAFGQCLPSDAARQSFLS 224
+S + + D+ L L F +L
Sbjct: 68 -VSSLVEPSKVGQFDQVLNLCLTEF---------ENCYLE 97
Score = 28.1 bits (62), Expect = 3.5
Identities = 37/246 (15%), Positives = 75/246 (30%), Gaps = 98/246 (39%)
Query: 39 ISTSTP--VVVQVSGLPPSNVTERYKGFSPFSFQGLD------RVVFRELLHNTFDLV-- 88
I + P + + G + E Y S F+ + +F+E+ ++
Sbjct: 1664 IVINNPVNLTIHFGGEKGKRIRENY---SAMIFETIVDGKLKTEKIFKEINEHSTSYTFR 1720
Query: 89 -TEEILME------RIF----CAFDRLCD-GVIHLDEWVLGLSCFLRGTNEE---LIKFT 133
+ +L + AF+ L G+I D G S L G E L
Sbjct: 1721 SEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS--L-G---EYAALASLA 1774
Query: 134 FLIYDLNNDGFITREEMFQLL--RNSLISH--PQDE-----------DP--------DEG 170
++ E + +++ R + P+DE +P E
Sbjct: 1775 ---------DVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEA 1825
Query: 171 VRDLVELALRK--------------------------------MDYDKDGKISFQDFQQS 198
++ +VE ++ +++ K KI + Q+S
Sbjct: 1826 LQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKS 1885
Query: 199 VTDEPL 204
++ E +
Sbjct: 1886 LSLEEV 1891
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 46.4 bits (111), Expect = 8e-07
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 127 EELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDK 186
+EL F +D N DG I+ E+ + +R L D +E +RD+ D +
Sbjct: 88 KELRD-AFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDV--------DLNG 138
Query: 187 DGKISFQDF 195
DG++ F++F
Sbjct: 139 DGRVDFEEF 147
Score = 42.9 bits (102), Expect = 1e-05
Identities = 14/73 (19%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Query: 125 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKM 182
EE+ ++ F +D + DG+I ++ +R ++ P + + + +L + ++
Sbjct: 6 RPEEIEELREAFREFDKDKDGYINCRDLGNCMR-TMGYMPTEME----LIELSQ----QI 56
Query: 183 DYDKDGKISFQDF 195
+ + G + F DF
Sbjct: 57 NMNLGGHVDFDDF 69
Score = 40.2 bits (95), Expect = 1e-04
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 20/118 (16%)
Query: 89 TEEILME--RIFCAFDRLCDGVIHLDEWVLGLSCFLRG-----TNEELIKFTFLI--YDL 139
E + E F FD+ DG I+ + L +R T ELI+ L ++
Sbjct: 6 RPEEIEELREAFREFDKDKDGYINCRD----LGNCMRTMGYMPTEMELIE---LSQQINM 58
Query: 140 NNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 197
N G + ++ +L+ L++ D + +RD A R+ D + DG+IS + ++
Sbjct: 59 NLGGHVDFDDFVELMGPKLLAETADMIGVKELRD----AFREFDTNGDGEISTSELRE 112
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: a.39.1.5
Length = 67
Score = 44.0 bits (105), Expect = 8e-07
Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Query: 130 IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGK 189
K F +D N DG ++ +E ++ + + ED + ++D D +G+
Sbjct: 3 AKRVFEKFDKNKDGKLSLDEFREVAL-AFSPYFTQED--------IVKFFEEIDVDGNGE 53
Query: 190 ISFQDF 195
++ +F
Sbjct: 54 LNADEF 59
Score = 28.2 bits (64), Expect = 0.47
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 94 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEEL----IKFTFLIYDLNNDGFITREE 149
+R+F FD+ DG + LDE + I F D++ +G + +E
Sbjct: 3 AKRVFEKFDKNKDGKLSLDE----FREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADE 58
Query: 150 MFQLLRNSL 158
+ L
Sbjct: 59 FTSCIEKML 67
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 44.4 bits (106), Expect = 1e-06
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 11/73 (15%)
Query: 125 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKM 182
+ EE+ +K F + D +N G IT +E+ L+ + S + + ++DL++
Sbjct: 18 SEEEIGGLKELFKMIDTDNSGTITFDELKDGLK-RVGSELMESE----IKDLMD----AA 68
Query: 183 DYDKDGKISFQDF 195
D DK G I + +F
Sbjct: 69 DIDKSGTIDYGEF 81
Score = 25.2 bits (56), Expect = 7.8
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 164 DEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 197
+ +E + L E + +D D G I+F + +
Sbjct: 15 ERLSEEEIGGLKE-LFKMIDTDNSGTITFDELKD 47
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 44.0 bits (105), Expect = 1e-06
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 10/73 (13%)
Query: 123 RGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKM 182
R E+L F +D + DG IT +E+ + + L E+ D +R+
Sbjct: 2 RAGLEDLQV-AFRAFDQDGDGHITVDELRRAMAG-LGQPLPQEELDAMIRE--------A 51
Query: 183 DYDKDGKISFQDF 195
D D+DG++++++F
Sbjct: 52 DVDQDGRVNYEEF 64
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 46.1 bits (110), Expect = 2e-06
Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 9/85 (10%)
Query: 125 TNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDY 184
+ + + F D + G I+ E+ L + L+ + D
Sbjct: 24 NDNQELMEWFRAVDTDGSGAISVPELNAALSS-AGVPFSLAT----TEKLLHM----YDK 74
Query: 185 DKDGKISFQDFQQSVTDEPLLLEAF 209
+ G+I+F +F+ + E F
Sbjct: 75 NHSGEITFDEFKDLHHFILSMREGF 99
Score = 42.3 bits (100), Expect = 3e-05
Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 17/110 (15%)
Query: 101 FDRLCDGVIHLDEWVLGLSCFLRG-TNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLI 159
+D+ G I DE F ++ F D + DG + E +R +L+
Sbjct: 72 YDKNHSGEITFDE-------FKDLHHFILSMREGFRKRDSSGDGRLDSNE----VRAALL 120
Query: 160 SHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAF 209
S + +RK D + G + F D+ + + F
Sbjct: 121 SSGYQVSEQT-----FQALMRKFDRQRRGSLGFDDYVELSIFVCRVRNVF 165
Score = 31.9 bits (73), Expect = 0.092
Identities = 18/112 (16%), Positives = 35/112 (31%), Gaps = 16/112 (14%)
Query: 86 DLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFI 145
DL + M F D DG + +E L +E+ + +D G +
Sbjct: 87 DLHHFILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSL 146
Query: 146 TREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 197
++ +L V + D ++ G+++F F
Sbjct: 147 GFDDYVELSIF--------------VCRVRN-VFAFYDRERTGQVTF-TFDT 182
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 45.2 bits (108), Expect = 2e-06
Identities = 26/129 (20%), Positives = 49/129 (37%), Gaps = 21/129 (16%)
Query: 74 RVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTN-EELIKF 132
+ + N T+E L G I+ ++ L GT+ E++I+
Sbjct: 30 HDMLASMGKN----PTDEYLEG-----MMSEAPGPINFTMFLTMFGEKLNGTDPEDVIRN 80
Query: 133 TFLIYDLNNDGFITREEMFQLLRNSLISHPQDED-PDEGVRDLVELALRKMDYDKDGKIS 191
F +D GFI + + +LL + DE V ++ R+ DK G +
Sbjct: 81 AFACFDEEASGFIHEDHLRELLTT------MGDRFTDEEVDEM----YREAPIDKKGNFN 130
Query: 192 FQDFQQSVT 200
+ +F + +
Sbjct: 131 YVEFTRILK 139
Score = 40.6 bits (96), Expect = 7e-05
Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 20/87 (22%)
Query: 130 IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGK 189
K F + D N DGFI +E++ +L S+ +P DE L M + G
Sbjct: 9 FKEAFNMIDQNRDGFIDKEDLHDMLA-SMGKNPTDEY------------LEGMMSEAPGP 55
Query: 190 ISFQDF-------QQSVTDEPLLLEAF 209
I+F F E ++ AF
Sbjct: 56 INFTMFLTMFGEKLNGTDPEDVIRNAF 82
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II,
calcium/phospholipid binding protein,
calcium-phospholipid protein complex; 2.25A {Homo
sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Length = 96
Score = 44.0 bits (104), Expect = 2e-06
Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 128 ELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKD 187
E + FTF + + G++T+E++ L+ +++ V + ++ +D +D
Sbjct: 9 ETMMFTFHKFA-GDKGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKI----MKDLDQCRD 63
Query: 188 GKISFQDF 195
GK+ FQ F
Sbjct: 64 GKVGFQSF 71
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 44.3 bits (105), Expect = 2e-06
Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 11/73 (15%)
Query: 125 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKM 182
+L K ++ +DLN +G I + ++L L + ++ L+ ++
Sbjct: 27 LPSKLEGFKEKYMEFDLNGNGDIDIMSLKRMLE-KLGVPKTHLE----LKKLI----GEV 77
Query: 183 DYDKDGKISFQDF 195
S+ DF
Sbjct: 78 SSGSGETFSYPDF 90
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 45.2 bits (108), Expect = 2e-06
Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 27/148 (18%)
Query: 74 RVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTN-EELIKF 132
V R L N TE L + I D +G I E++ ++ ++ T+ EE I+
Sbjct: 34 GTVMRSLGQN----PTEAELQDMI-NEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIRE 88
Query: 133 TFLIYDLNNDGFITREEMFQLLRNSLISHPQDED-PDEGVRDLVELALRKMDYDKDGKIS 191
F ++D + +G+I+ E+ ++ N E DE V +++ A D D DG+++
Sbjct: 89 AFRVFDKDGNGYISAAELRHVMTNL------GEKLTDEEVDEMIREA----DIDGDGQVN 138
Query: 192 FQDFQQ----------SVTDEPLLLEAF 209
+++F Q + + ++
Sbjct: 139 YEEFVQMMTAKGGGGGAAARKEVIRNKI 166
Score = 41.4 bits (98), Expect = 7e-05
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 11/73 (15%)
Query: 125 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKM 182
T E++ K F ++D + DG IT +E+ ++R SL +P + + ++D++ ++
Sbjct: 6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMR-SLGQNPTEAE----LQDMIN----EV 56
Query: 183 DYDKDGKISFQDF 195
D D +G I F +F
Sbjct: 57 DADGNGTIDFPEF 69
Score = 39.4 bits (93), Expect = 3e-04
Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 24/118 (20%)
Query: 89 TEEILME--RIFCAFDRLCDGVIHLDEWVLGLSCFLRG-----TNEELIKFTFLI--YDL 139
TEE + E F FD+ DG I E L +R T EL +I D
Sbjct: 6 TEEQIAEFKEAFSLFDKDGDGTITTKE----LGTVMRSLGQNPTEAELQD---MINEVDA 58
Query: 140 NNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 197
+ +G I E ++ +D D +E +R+ A R D D +G IS + +
Sbjct: 59 DGNGTIDFPEFLTMMA----RKMKDTDSEEEIRE----AFRVFDKDGNGYISAAELRH 108
Score = 35.6 bits (83), Expect = 0.006
Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 22/112 (19%)
Query: 89 TEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRG-----TNEEL---IKFTFLIYDLN 140
+EE + E F FD+ +G I E L + T+EE+ I+ D++
Sbjct: 82 SEEEIRE-AFRVFDKDGNGYISAAE----LRHVMTNLGEKLTDEEVDEMIRE----ADID 132
Query: 141 NDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISF 192
DG + EE Q++ + +R +
Sbjct: 133 GDGQVNYEEFVQMMTAKG----GGGGAAARKEVIRN-KIRAIGKMARVFSVL 179
Score = 31.7 bits (73), Expect = 0.11
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 9/77 (11%)
Query: 74 RVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTN----EEL 129
R V L L EE+ + + D DG ++ +E+V ++ G +E+
Sbjct: 107 RHVMTNLGEK---LTDEEV--DEMIREADIDGDGQVNYEEFVQMMTAKGGGGGAAARKEV 161
Query: 130 IKFTFLIYDLNNDGFIT 146
I+ F
Sbjct: 162 IRNKIRAIGKMARVFSV 178
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 44.4 bits (106), Expect = 3e-06
Identities = 22/123 (17%), Positives = 56/123 (45%), Gaps = 15/123 (12%)
Query: 74 RVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTN-EELIKF 132
+V R L +E + + + D+ G ++ +++ ++ + + +E I
Sbjct: 29 KVAMRALGFE----PKKEEIKK-MISEIDKEGTGKMNFGDFLTVMTQKMSEKDTKEEILK 83
Query: 133 TFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISF 192
F ++D + G I+ + L+ ++ +E ++++++ A D D DG++S
Sbjct: 84 AFKLFDDDETGKISFKN----LKRVAKELGENLTDEE-LQEMIDEA----DRDGDGEVSE 134
Query: 193 QDF 195
Q+F
Sbjct: 135 QEF 137
Score = 41.7 bits (99), Expect = 3e-05
Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 18/94 (19%)
Query: 125 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKM 182
T E+ I+ F ++D + G I +E+ +R +L P+ E+ ++ ++ ++
Sbjct: 1 TEEQKQEIREAFDLFDADGTGTIDVKELKVAMR-ALGFEPKKEE----IKKMIS----EI 51
Query: 183 DYDKDGKISFQDFQQSVT-------DEPLLLEAF 209
D + GK++F DF +T + +L+AF
Sbjct: 52 DKEGTGKMNFGDFLTVMTQKMSEKDTKEEILKAF 85
Score = 39.4 bits (93), Expect = 2e-04
Identities = 28/118 (23%), Positives = 45/118 (38%), Gaps = 24/118 (20%)
Query: 89 TEEILME--RIFCAFDRLCDGVIHLDEWVLGLSCFLRG-----TNEELIKFTFLI--YDL 139
TEE E F FD G I + E L +R EE+ K +I D
Sbjct: 1 TEEQKQEIREAFDLFDADGTGTIDVKE----LKVAMRALGFEPKKEEIKK---MISEIDK 53
Query: 140 NNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 197
G + + ++ ++D E + A + D D+ GKISF++ ++
Sbjct: 54 EGTGKMNFGDFLTVMT----QKMSEKDTKEEILK----AFKLFDDDETGKISFKNLKR 103
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 44.5 bits (106), Expect = 4e-06
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 18/126 (14%)
Query: 74 RVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTN----EEL 129
V R L N T E L E I D G + DE+++ + ++ + EE
Sbjct: 42 GKVMRMLGQN----PTPEELQEMI-DEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEE 96
Query: 130 IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGK 189
+ F ++D N DG+I EE L+ L + + D+ + +L++ D + DG+
Sbjct: 97 LSDLFRMFDKNADGYIDLEE----LKIMLQATGETITEDD-IEELMKDG----DKNNDGR 147
Query: 190 ISFQDF 195
I + +F
Sbjct: 148 IDYDEF 153
Score = 37.9 bits (89), Expect = 8e-04
Identities = 29/128 (22%), Positives = 49/128 (38%), Gaps = 24/128 (18%)
Query: 89 TEEILME--RIFCAFDR-LCDGVIHLDEWVLGLSCFLRG-----TNEELIKFTFLI--YD 138
TEE E F F DG I E L +R T EEL + +I D
Sbjct: 13 TEEQKNEFKAAFDIFVLGAEDGSISTKE----LGKVMRMLGQNPTPEELQE---MIDEVD 65
Query: 139 LNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQS 198
+ G + +E ++ S+ +D+ + +L + R D + DG I ++ +
Sbjct: 66 EDGSGTVDFDEFLVMMVRSM----KDDSKGKSEEELSD-LFRMFDKNADGYIDLEELKIM 120
Query: 199 VT--DEPL 204
+ E +
Sbjct: 121 LQATGETI 128
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 42.6 bits (101), Expect = 4e-06
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Query: 125 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKM 182
T EE K F ++D +ND +T EE+ ++R +L ++P + + ++ ++
Sbjct: 9 TAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMR-ALGANPTKQK----ISEI----VKDY 59
Query: 183 DYDKDGKISFQDF 195
D D GK + F
Sbjct: 60 DKDNSGKFDQETF 72
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping,
EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB:
1h4b_A
Length = 86
Score = 42.6 bits (101), Expect = 5e-06
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 12/73 (16%)
Query: 125 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKM 182
T +++ + F +D N DG I+ E+ L+ + ++ VR ++ ++
Sbjct: 6 TPQDIADRERIFKRFDTNGDGKISSSELGDALKT--LGSVTPDE----VRRMM----AEI 55
Query: 183 DYDKDGKISFQDF 195
D D DG ISF +F
Sbjct: 56 DTDGDGFISFDEF 68
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 42.6 bits (101), Expect = 5e-06
Identities = 17/73 (23%), Positives = 39/73 (53%), Gaps = 10/73 (13%)
Query: 123 RGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKM 182
EEL + F ++D + +G+I+ E+ ++ N L DE+ ++ +++
Sbjct: 5 TDAEEELKE-AFKVFDKDQNGYISASELRHVMIN-LGEKLTDEEVEQMIKE--------A 54
Query: 183 DYDKDGKISFQDF 195
D D DG++++++F
Sbjct: 55 DLDGDGQVNYEEF 67
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 44.1 bits (105), Expect = 6e-06
Identities = 20/119 (16%), Positives = 39/119 (32%), Gaps = 21/119 (17%)
Query: 89 TEEILME--RIFCAFDRL-CDGVIHLDEWVLGLSCFLRG-----TNEELIKFTFLI--YD 138
+ + F F+ G + D+ + L T + + LI +D
Sbjct: 8 SSNQVKLLETAFRDFETPEGSGRVSTDQ----IGIILEVLGIQQTKSTIRQ---LIDEFD 60
Query: 139 LNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 197
+G I + + L E + +R+ A R D + +G IS ++
Sbjct: 61 PFGNGDIDFDSFKIIGARFLGEEVNPEQMQQELRE----AFRLYDKEGNGYISTDVMRE 115
Score = 42.9 bits (102), Expect = 1e-05
Identities = 14/73 (19%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 123 RGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKM 182
+EL + F +YD +G+I+ + +R L + ++ + +++
Sbjct: 87 EQMQQELRE-AFRLYDKEGNGYISTDV----MREILAELDETLSSED-LDAMIDEI---- 136
Query: 183 DYDKDGKISFQDF 195
D D G + F++F
Sbjct: 137 DADGSGTVDFEEF 149
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 43.2 bits (102), Expect = 6e-06
Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 21/87 (24%)
Query: 111 LDEWVLGLSCFLRGTNEELIKFT--FLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPD 168
+ EW + +K+ F +D G +T + +L S + P
Sbjct: 3 VAEWAV--------PQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSL-------PQ 47
Query: 169 EGVRDLVELALRKMDYDKDGKISFQDF 195
+ + L+ D D+DGK++ ++F
Sbjct: 48 AQLASIWNLS----DIDQDGKLTAEEF 70
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 44.1 bits (105), Expect = 6e-06
Identities = 21/123 (17%), Positives = 41/123 (33%), Gaps = 18/123 (14%)
Query: 74 RVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTN-EELIKF 132
R F + V E L + G I+ ++ L+G + E++I
Sbjct: 48 RETFAAMGRL---NVKNEELDA-----MIKEASGPINFTVFLTMFGEKLKGADPEDVIMG 99
Query: 133 TFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISF 192
F + D + G I + L L + P+E ++ D G + +
Sbjct: 100 AFKVLDPDGKGSIKKSF----LEELLTTGGGRFTPEE-----IKNMWAAFPPDVAGNVDY 150
Query: 193 QDF 195
++
Sbjct: 151 KNI 153
Score = 40.6 bits (96), Expect = 9e-05
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 12/66 (18%)
Query: 130 IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGK 189
K F + D N DG I ++++ + + ++E+ L M + G
Sbjct: 27 FKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEE------------LDAMIKEASGP 74
Query: 190 ISFQDF 195
I+F F
Sbjct: 75 INFTVF 80
Score = 33.7 bits (78), Expect = 0.019
Identities = 21/122 (17%), Positives = 37/122 (30%), Gaps = 23/122 (18%)
Query: 83 NTFDLVTEEILME--RIFCAFDRLCDGVIHLDEWVLGLSCFLR-----GTNEELIKFTFL 135
N F + E + + F D+ DG+I D+ L E +
Sbjct: 14 NVFSMFDETEIEDFKEAFTVIDQNADGIIDKDD----LRETFAAMGRLNVKNEELD---- 65
Query: 136 IYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDF 195
G I + L + DP++ + A + +D D G I
Sbjct: 66 AMIKEASGPINFTVFLTMFGEKL----KGADPEDVIMG----AFKVLDPDGKGSIKKSFL 117
Query: 196 QQ 197
++
Sbjct: 118 EE 119
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 44.4 bits (105), Expect = 7e-06
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 140 NNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSV 199
DG I +E+ + L S I+ E R +V + +D D G + F +F++
Sbjct: 44 GQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSM----LDRDMSGTMGFNEFKELW 99
Query: 200 TDEPLLLEAF 209
+ F
Sbjct: 100 AVLNGWRQHF 109
Score = 36.3 bits (84), Expect = 0.003
Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 21/136 (15%)
Query: 74 RVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFT 133
+ F+L T +++ DR G + +E L L G +
Sbjct: 59 TQSGIAGGYKPFNLETCRLMVS----MLDRDMSGTMGFNE-FKELWAVLNG-----WRQH 108
Query: 134 FLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQ 193
F+ +D + G + +E+ + L V ++ Y +GKI+F
Sbjct: 109 FISFDTDRSGTVDPQELQKALTTMGFRLSPQA---------VNSIAKR--YSTNGKITFD 157
Query: 194 DFQQSVTDEPLLLEAF 209
D+ L ++F
Sbjct: 158 DYIACCVKLRALTDSF 173
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 41.8 bits (99), Expect = 8e-06
Identities = 12/73 (16%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
Query: 125 TNEELIKFTFLIYDLN--NDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKM 182
+ EE+ F ++ + I++EE+ +++ + + +++ ++
Sbjct: 3 SPEEIKG-AFEVFAAKEGDPNQISKEELKLVMQTLG--PSLLKGMST-LDEMI----EEV 54
Query: 183 DYDKDGKISFQDF 195
D + DG++SF++F
Sbjct: 55 DKNGDGEVSFEEF 67
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 43.3 bits (103), Expect = 1e-05
Identities = 21/124 (16%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 74 RVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTN-EELIKF 132
+V + L + + +++ + +D ++ D++ + + + + + IK
Sbjct: 46 KVAMKALGFE----LPKREILD-LIDEYDSEGRHLMKYDDFYIVMGEKILKRDPLDEIKR 100
Query: 133 TFLIYDLNNDGFITREEMFQLLRNSLISHPQDED-PDEGVRDLVELALRKMDYDKDGKIS 191
F ++D ++ G I+ + + ++ + E DE +R ++E D D DG+I+
Sbjct: 101 AFQLFDDDHTGKISIKNLRRVAKEL------GETLTDEELRAMIEEF----DLDGDGEIN 150
Query: 192 FQDF 195
+F
Sbjct: 151 ENEF 154
Score = 42.5 bits (101), Expect = 2e-05
Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 22/96 (22%)
Query: 125 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKM 182
E+ I F ++D+NNDGF+ E+ ++ +L + + DL++ +
Sbjct: 18 LEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMK-ALGFELPKRE----ILDLID----EY 68
Query: 183 DYDKDGKISFQDFQQSVT---------DEPLLLEAF 209
D + + + DF + DE + AF
Sbjct: 69 DSEGRHLMKYDDFYIVMGEKILKRDPLDE--IKRAF 102
Score = 39.5 bits (93), Expect = 2e-04
Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 24/118 (20%)
Query: 89 TEEILME--RIFCAFDRLCDGVIHLDEWVLGLSCFLRG-----TNEELIKFTFLI--YDL 139
EE E F FD DG + E L ++ E++ LI YD
Sbjct: 18 LEEQKQEIYEAFSLFDMNNDGFLDYHE----LKVAMKALGFELPKREILD---LIDEYDS 70
Query: 140 NNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 197
+ ++ + ++ + DP + ++ A + D D GKIS ++ ++
Sbjct: 71 EGRHLMKYDDFYIVMGEKI----LKRDPLDEIKR----AFQLFDDDHTGKISIKNLRR 120
Score = 27.1 bits (61), Expect = 3.1
Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 18/76 (23%)
Query: 90 EEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRG-----TNEEL---IKFTFLIYDLNN 141
+EI R F FD G I + L + T+EEL I+ +DL+
Sbjct: 96 DEIK--RAFQLFDDDHTGKISIKN----LRRVAKELGETLTDEELRAMIEE----FDLDG 145
Query: 142 DGFITREEMFQLLRNS 157
DG I E + +S
Sbjct: 146 DGEINENEFIAICTDS 161
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 44.0 bits (104), Expect = 1e-05
Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 9/76 (11%)
Query: 134 FLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQ 193
F+ D + G + E+ I ++ + D D +G ISF
Sbjct: 57 FMGVDRDRSGTLEINELMMGQFPGGIRLSPQT-----ALRMMRI----FDTDFNGHISFY 107
Query: 194 DFQQSVTDEPLLLEAF 209
+F L F
Sbjct: 108 EFMAMYKFMELAYNLF 123
Score = 41.7 bits (98), Expect = 7e-05
Identities = 17/114 (14%), Positives = 28/114 (24%), Gaps = 22/114 (19%)
Query: 85 FDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNE-ELIKFTFLIYDLNNDG 143
T +M FD +G I E F+ EL F++ G
Sbjct: 84 LSPQTALRMMR----IFDTDFNGHISFYE-------FMAMYKFMELAYNLFVMNARARSG 132
Query: 144 FITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 197
+ E+ L+ Q L L ++ +
Sbjct: 133 TLEPHEILPALQQLGFYINQR----------TSLLLHRLFARGMAFCDLNCWIA 176
Score = 31.7 bits (72), Expect = 0.12
Identities = 12/108 (11%), Positives = 33/108 (30%), Gaps = 15/108 (13%)
Query: 94 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQL 153
+ + F DR G + ++E ++G + + I+D + +G I+ E +
Sbjct: 53 IYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNGHISFYEFMAM 112
Query: 154 LRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTD 201
+ + + G + + ++
Sbjct: 113 YKF--------------MELAYN-LFVMNARARSGTLEPHEILPALQQ 145
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 42.9 bits (102), Expect = 1e-05
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 19/125 (15%)
Query: 74 RVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFL--RGTNEELIK 131
V R L N TE L + I D +G I E++ ++ + + + EELI+
Sbjct: 33 GTVMRSLGQN----PTEAELQDMI-NEVDADGNGTIDFPEFLSLMARKMKEQDSEEELIE 87
Query: 132 FTFLIYDLNNDGFITREEMFQLLRNSLISHPQDED-PDEGVRDLVELALRKMDYDKDGKI 190
F ++D + +G I+ E+ ++ N E D+ V +++ A D D DG I
Sbjct: 88 -AFKVFDRDGNGLISAAELRHVMTNL------GEKLTDDEVDEMIREA----DIDGDGHI 136
Query: 191 SFQDF 195
++++F
Sbjct: 137 NYEEF 141
Score = 40.5 bits (96), Expect = 8e-05
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 22/107 (20%)
Query: 98 FCAFDRLCDGVIHLDEWVLGLSCFLRG-----TNEELIKFTFLI--YDLNNDGFITREEM 150
F FD+ DG I E L +R T EL +I D + +G I E
Sbjct: 16 FALFDKDGDGTITTKE----LGTVMRSLGQNPTEAELQD---MINEVDADGNGTIDFPEF 68
Query: 151 FQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 197
L+ +++D +E +L+E A + D D +G IS + +
Sbjct: 69 LSLMA----RKMKEQDSEE---ELIE-AFKVFDRDGNGLISAAELRH 107
Score = 39.8 bits (94), Expect = 1e-04
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 11/73 (15%)
Query: 125 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKM 182
T E++ K F ++D + DG IT +E+ ++R SL +P + + ++D+ + ++
Sbjct: 5 TEEQIAEFKEAFALFDKDGDGTITTKELGTVMR-SLGQNPTEAE----LQDM----INEV 55
Query: 183 DYDKDGKISFQDF 195
D D +G I F +F
Sbjct: 56 DADGNGTIDFPEF 68
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 42.9 bits (101), Expect = 1e-05
Identities = 12/69 (17%), Positives = 29/69 (42%), Gaps = 9/69 (13%)
Query: 127 EELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDK 186
K ++ +DLNN+G I + +++ L + ++ ++ ++
Sbjct: 49 LTAFKEKYMEFDLNNEGEIDLMSLKRMME-KLGVPKTHLE----MKKMI----SEVTGGV 99
Query: 187 DGKISFQDF 195
IS++DF
Sbjct: 100 SDTISYRDF 108
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 43.0 bits (102), Expect = 1e-05
Identities = 17/103 (16%), Positives = 41/103 (39%), Gaps = 15/103 (14%)
Query: 102 DRLCDGVIHLDEWVLGLSCFLR----GTNEELIKFTFLIYDLNNDGFITREEMFQLLRNS 157
D L + + ++ L + GT E+ ++ F ++D +G + E+ +L
Sbjct: 58 DELKSRRVDFETFLPMLQAVAKNRGQGTYEDYLE-GFRVFDKEGNGKVMGAELRHVLTT- 115
Query: 158 LISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVT 200
L +E+ + + D +G I+++ F + +
Sbjct: 116 LGEKMTEEEVET---------VLAGHEDSNGCINYEAFLKHIL 149
Score = 40.7 bits (96), Expect = 8e-05
Identities = 22/106 (20%), Positives = 39/106 (36%), Gaps = 16/106 (15%)
Query: 98 FCAFDRLCDGVIHLDEWVLGLSCFLRG-----TNEELIKFTFLI-YDLNNDGFITREEMF 151
F FDR+ DG I + +R TN E++K D + E
Sbjct: 16 FELFDRVGDGKILYSQ----CGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFETFL 71
Query: 152 QLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 197
+L ++ + + E D +E R D + +GK+ + +
Sbjct: 72 PML--QAVAKNRGQGTYE---DYLE-GFRVFDKEGNGKVMGAELRH 111
Score = 38.3 bits (90), Expect = 5e-04
Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
Query: 125 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKM 182
++L K F ++D DG I + ++R +L +P + + V ++ K
Sbjct: 5 NKDQLEEFKEAFELFDRVGDGKILYSQCGDVMR-ALGQNPTNAE----VLKVLGNP--KS 57
Query: 183 DYDKDGKISFQDF 195
D K ++ F+ F
Sbjct: 58 DELKSRRVDFETF 70
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 42.9 bits (102), Expect = 1e-05
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 10/73 (13%)
Query: 123 RGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKM 182
R + EE++K F ++D +N G IT ++ LR ++ +E +++++ A
Sbjct: 97 RDSREEILK-AFRLFDDDNSGTITIKD----LRRVAKELGENLTEEE-LQEMIAEA---- 146
Query: 183 DYDKDGKISFQDF 195
D + D +I +F
Sbjct: 147 DRNDDNEIDEDEF 159
Score = 42.2 bits (100), Expect = 3e-05
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 22/96 (22%)
Query: 125 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKM 182
T E+ I+ F ++D + G I +E+ +R +L P+ E+ ++ ++ ++
Sbjct: 23 TEEQKQEIREAFDLFDTDGSGTIDAKELKVAMR-ALGFEPKKEE----IKKMIS----EI 73
Query: 183 DYDKDGKISFQDFQQSVT---------DEPLLLEAF 209
D D G I F++F +T +E +L+AF
Sbjct: 74 DKDGSGTIDFEEFLTMMTAKMGERDSREE--ILKAF 107
Score = 39.1 bits (92), Expect = 3e-04
Identities = 30/118 (25%), Positives = 43/118 (36%), Gaps = 24/118 (20%)
Query: 89 TEEILME--RIFCAFDRLCDGVIHLDEWVLGLSCFLRG-----TNEELIKFTFLI--YDL 139
TEE E F FD G I E L +R EE+ K +I D
Sbjct: 23 TEEQKQEIREAFDLFDTDGSGTIDAKE----LKVAMRALGFEPKKEEIKK---MISEIDK 75
Query: 140 NNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 197
+ G I EE ++ + + D E + A R D D G I+ +D ++
Sbjct: 76 DGSGTIDFEEFLTMMT----AKMGERDSREEILK----AFRLFDDDNSGTITIKDLRR 125
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 43.1 bits (102), Expect = 1e-05
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 140 NNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSV 199
DG I +E+ + L S I+ E R +V + +D D G + F +F++
Sbjct: 13 GQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSM----LDRDMSGTMGFNEFKELW 68
Query: 200 TDEPLLLEAF 209
+ F
Sbjct: 69 AVLNGWRQHF 78
Score = 35.8 bits (83), Expect = 0.004
Identities = 22/129 (17%), Positives = 43/129 (33%), Gaps = 23/129 (17%)
Query: 82 HNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTN-EELIKFTFLIYDLN 140
+ F+L T +++ DR G + +E F + F+ +D +
Sbjct: 36 YKPFNLETCRLMVS----MLDRDMSGTMGFNE-------FKELWAVLNGWRQHFISFDSD 84
Query: 141 NDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVT 200
G + +E+ + L V ++ Y GKI+F D+
Sbjct: 85 RSGTVDPQELQKALTTMGFRLNPQT---------VNSIAKR--YSTSGKITFDDYIACCV 133
Query: 201 DEPLLLEAF 209
L ++F
Sbjct: 134 KLRALTDSF 142
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 41.4 bits (98), Expect = 2e-05
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Query: 125 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKM 182
+ E + K F ++D + G I+ +E+ ++R L +P E+ + ++ ++
Sbjct: 15 SEEMIAEFKAAFDMFDADGGGDISTKELGTVMR-MLGQNPTKEE----LDAII----EEV 65
Query: 183 DYDKDGKISFQDF 195
D D G I F++F
Sbjct: 66 DEDGSGTIDFEEF 78
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 42.5 bits (101), Expect = 2e-05
Identities = 13/89 (14%), Positives = 32/89 (35%), Gaps = 22/89 (24%)
Query: 130 IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGK 189
K F ++D + G I + + LLR + +P + + +++ +
Sbjct: 7 YKQAFSLFDRHGTGRIPKTSIGDLLR-ACGQNPTLAE------------ITEIESTLPAE 53
Query: 190 ISFQDF-----QQSVTDEPL----LLEAF 209
+ + F + + D P ++ F
Sbjct: 54 VDMEQFLQVLNRPNGFDMPGDPEEFVKGF 82
Score = 38.3 bits (90), Expect = 5e-04
Identities = 19/105 (18%), Positives = 33/105 (31%), Gaps = 20/105 (19%)
Query: 98 FCAFDRLCDGVIHLDEWVLGLSCFLRG-----TNEELIKFTFLIYDLNNDGFITREEMFQ 152
F FDR G I + LR T E+ + + + E+ Q
Sbjct: 11 FSLFDRHGTGRIPKTS----IGDLLRACGQNPTLAEITE-----IESTLPAEVDMEQFLQ 61
Query: 153 LLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 197
+L + P + + V+ + D D G I + +
Sbjct: 62 VLNRPN----GFDMPGD-PEEFVK-GFQVFDKDATGMIGVGELRY 100
Score = 35.2 bits (82), Expect = 0.005
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 13/78 (16%)
Query: 124 GTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDED-PDEGVRDLVELALRKM 182
G EE +K F ++D + G I E+ +L + E +E + +L L+ +
Sbjct: 73 GDPEEFVK-GFQVFDKDATGMIGVGELRYVLTSL------GEKLSNEEMDEL----LKGV 121
Query: 183 DYDKDGKISFQDFQQSVT 200
DG +++ DF Q +
Sbjct: 122 PVK-DGMVNYHDFVQMIL 138
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 41.6 bits (98), Expect = 2e-05
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 13/73 (17%)
Query: 125 TNEELIKFT--FLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKM 182
+ E K+ FL D + DGF++ E+ ++ + + P + + L
Sbjct: 5 SPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGL-------PSTLLAHIWSLC---- 53
Query: 183 DYDKDGKISFQDF 195
D GK+S F
Sbjct: 54 DTKDCGKLSKDQF 66
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 42.6 bits (101), Expect = 2e-05
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 11/73 (15%)
Query: 125 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKM 182
+ E + K F ++D + G I+ +E+ ++R L +P E+ + ++E ++
Sbjct: 15 SEEMIAEFKAAFDMFDADGGGDISTKELGTVMR-MLGQNPTKEE----LDAIIE----EV 65
Query: 183 DYDKDGKISFQDF 195
D D G I F++F
Sbjct: 66 DEDGSGTIDFEEF 78
Score = 42.6 bits (101), Expect = 2e-05
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 10/69 (14%)
Query: 127 EELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDK 186
EEL F I+D N DGFI EE L L + + ++ + DL++ + D +
Sbjct: 96 EELAN-CFRIFDKNADGFIDIEE----LGEILRATGEHVTEED-IEDLMKDS----DKNN 145
Query: 187 DGKISFQDF 195
DG+I F +F
Sbjct: 146 DGRIDFDEF 154
Score = 39.9 bits (94), Expect = 2e-04
Identities = 28/118 (23%), Positives = 44/118 (37%), Gaps = 21/118 (17%)
Query: 89 TEEILME--RIFCAFDRLCDGVIHLDEWVLGLSCFLRG-----TNEELIKFTFLI--YDL 139
+EE++ E F FD G I E L +R T EEL +I D
Sbjct: 15 SEEMIAEFKAAFDMFDADGGGDISTKE----LGTVMRMLGQNPTKEELDA---IIEEVDE 67
Query: 140 NNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 197
+ G I EE F ++ + +E + + R D + DG I ++ +
Sbjct: 68 DGSGTIDFEE-FLVMMVRQMKEDAKGKSEEELAN----CFRIFDKNADGFIDIEELGE 120
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 40.9 bits (97), Expect = 2e-05
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 125 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKM 182
+ E+ IK F ++D N G I E+ +R +L + + + +L+ +
Sbjct: 2 SEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMR-ALGFDVKKPE----ILELM----NEY 52
Query: 183 DYDKDGKISFQDF 195
D + +G I F DF
Sbjct: 53 DREGNGYIGFDDF 65
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 42.3 bits (100), Expect = 2e-05
Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 9/73 (12%)
Query: 123 RGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKM 182
EL K F + IT E + + I ED +R+
Sbjct: 36 EEFVSELCK-GFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQG--------MVREG 86
Query: 183 DYDKDGKISFQDF 195
D D DG ++ +F
Sbjct: 87 DLDGDGALNQTEF 99
Score = 31.9 bits (73), Expect = 0.059
Identities = 4/61 (6%), Positives = 16/61 (26%), Gaps = 8/61 (13%)
Query: 137 YDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQ 196
E+M ++ + E+ + + + I+ + +
Sbjct: 12 TTSTTKMETKYEDMLPVMAEKM----DVEEFVSELCK----GFSLLADPERHLITAESLR 63
Query: 197 Q 197
+
Sbjct: 64 R 64
Score = 27.3 bits (61), Expect = 2.1
Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 13/97 (13%)
Query: 90 EEILMERIFCAFDRLCDGVIHLDE--WVLGLSCFLRGTNEEL---IKFTFLIYDLNNDGF 144
E+ + F +I + G+ + E+ ++ DL+ DG
Sbjct: 40 SEL--CKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVRE----GDLDGDGA 93
Query: 145 ITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRK 181
+ + E L+ S ED + + + L
Sbjct: 94 LNQTEFCVLMVRL--SPEMMEDAETWLEKALTQELCN 128
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 41.7 bits (98), Expect = 2e-05
Identities = 14/86 (16%), Positives = 27/86 (31%), Gaps = 21/86 (24%)
Query: 112 DEWVLGLSCFLRGTNEELIKFT--FLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDE 169
+ W + T E+ + F + FI+ S +
Sbjct: 12 EPWRI--------TEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKL-------SIP 56
Query: 170 GVRDLVELALRKMDYDKDGKISFQDF 195
+ + EL+ D D DG ++ +F
Sbjct: 57 ELSYIWELS----DADCDGALTLPEF 78
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 42.6 bits (101), Expect = 2e-05
Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 8/83 (9%)
Query: 127 EELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDK 186
+ + F D + G I+ E+ Q L N + VR ++ + D +
Sbjct: 6 QSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVT----VRSIISM----FDREN 57
Query: 187 DGKISFQDFQQSVTDEPLLLEAF 209
++F +F F
Sbjct: 58 KAGVNFSEFTGVWKYITDWQNVF 80
Score = 42.2 bits (100), Expect = 2e-05
Identities = 30/140 (21%), Positives = 46/140 (32%), Gaps = 27/140 (19%)
Query: 74 RVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTN-EELIKF 132
+ F+ VT ++ FDR ++ E F +
Sbjct: 30 QQALSNGTWTPFNPVTVRSIIS----MFDRENKAGVNFSE-------FTGVWKYITDWQN 78
Query: 133 TFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVR---DLVELALRKMDYDKDGK 189
F YD +N G I + E+ Q L G R ++ +RK D G+
Sbjct: 79 VFRTYDRDNSGMIDKNELKQALSGF------------GYRLSDQFHDILIRKFDRQGRGQ 126
Query: 190 ISFQDFQQSVTDEPLLLEAF 209
I+F DF Q L + F
Sbjct: 127 IAFDDFIQGCIVLQRLTDIF 146
Score = 26.4 bits (59), Expect = 6.1
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Query: 93 LMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFIT 146
+ + FDR G I D+++ + + L F YD + DG+I
Sbjct: 111 FHDILIRKFDRQGRGQIAFDDFI---QGCIV--LQRLTD-IFRRYDTDQDGWIQ 158
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 42.0 bits (99), Expect = 3e-05
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 140 NNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSV 199
DG + EE+ + L S I+ E R ++ + +D D GK+ F F++
Sbjct: 11 GQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAM----LDRDHTGKMGFNAFKELW 66
Query: 200 TDEPLLLEAF 209
E F
Sbjct: 67 AALNAWKENF 76
Score = 37.3 bits (87), Expect = 0.001
Identities = 22/137 (16%), Positives = 41/137 (29%), Gaps = 23/137 (16%)
Query: 74 RVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLR-GTNEELIKF 132
++ F L T I++ DR G + + F K
Sbjct: 26 TQSGINGTYSPFSLETCRIMIA----MLDRDHTGKMGFNA-------FKELWAALNAWKE 74
Query: 133 TFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISF 192
F+ D + G + E+ Q + + +++ Y K+G+I F
Sbjct: 75 NFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQT---------LTTIVKR--YSKNGRIFF 123
Query: 193 QDFQQSVTDEPLLLEAF 209
D+ L + F
Sbjct: 124 DDYVACCVKLRALTDFF 140
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis complex;
NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 40.1 bits (94), Expect = 4e-05
Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 13/73 (17%)
Query: 125 TNEELIKFT--FLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKM 182
T+E+ + F + +GFI + S + P + + EL+
Sbjct: 4 TDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKL-------PILELSHIWELS---- 52
Query: 183 DYDKDGKISFQDF 195
D+DKDG ++ +F
Sbjct: 53 DFDKDGALTLDEF 65
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 41.4 bits (98), Expect = 4e-05
Identities = 22/118 (18%), Positives = 50/118 (42%), Gaps = 16/118 (13%)
Query: 90 EEILMERIFCAFDRLCDGVIHLDEWVLGLSCFL---RGTNEELIKFTFLIYDLNNDGFIT 146
E++ ++ + + +E++ + +GT + ++ F +D GFI+
Sbjct: 47 EDVFA---VGGTHKMGEKSLPFEEFLPAYEGLMDCEQGTFADYME-AFKTFDREGQGFIS 102
Query: 147 REEMFQLLRNSLISHPQDED-PDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEP 203
E+ +L E DE V ++++L + D +G + ++DF + V P
Sbjct: 103 GAELRHVLTAL------GERLSDEDVDEIIKLT--DLQEDLEGNVKYEDFVKKVMAGP 152
Score = 35.2 bits (82), Expect = 0.006
Identities = 14/75 (18%), Positives = 32/75 (42%), Gaps = 14/75 (18%)
Query: 125 TNEEL--IKFTFLIYDL--NNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALR 180
+ +E+ +K F ++D DG + ++ + R L +P++ED V +
Sbjct: 4 SQDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCR-CLGINPRNED----VFAVGG---- 54
Query: 181 KMDYDKDGKISFQDF 195
+ + F++F
Sbjct: 55 -THKMGEKSLPFEEF 68
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 40.9 bits (97), Expect = 6e-05
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 11/73 (15%)
Query: 125 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKM 182
T E++ K F ++D +N G I+ E+ ++R SL P + + V DL+ ++
Sbjct: 6 TEEQIAEFKEAFALFDKDNSGSISASELATVMR-SLGLSPSEAE----VADLMN----EI 56
Query: 183 DYDKDGKISFQDF 195
D D + I F +F
Sbjct: 57 DVDGNHAIEFSEF 69
Score = 39.4 bits (93), Expect = 2e-04
Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 22/107 (20%)
Query: 98 FCAFDRLCDGVIHLDEWVLGLSCFLRG-----TNEELIKFTFLI--YDLNNDGFITREEM 150
F FD+ G I E L+ +R + E+ L+ D++ + I E
Sbjct: 17 FALFDKDNSGSISASE----LATVMRSLGLSPSEAEVAD---LMNEIDVDGNHAIEFSEF 69
Query: 151 FQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 197
L+ + D ++ +L+E A + D + DG IS + +
Sbjct: 70 LALMS----RQLKCNDSEQ---ELLE-AFKVFDKNGDGLISAAELKH 108
Score = 39.4 bits (93), Expect = 2e-04
Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 18/124 (14%)
Query: 74 RVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFL--RGTNEELIK 131
V R L + +E + + + D + I E++ +S L + +EL++
Sbjct: 34 ATVMRSLGLS----PSEAEVADLM-NEIDVDGNHAIEFSEFLALMSRQLKCNDSEQELLE 88
Query: 132 FTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKIS 191
F ++D N DG I+ E L++ L S + E V +++ D G+I+
Sbjct: 89 -AFKVFDKNGDGLISAAE----LKHVLTSIGEKLTDAE-VDEMLREV----S-DGSGEIN 137
Query: 192 FQDF 195
+ F
Sbjct: 138 IKQF 141
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 40.5 bits (96), Expect = 7e-05
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 16/87 (18%)
Query: 130 IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGK 189
K F ++D GFIT+E + +L+ + ++ + D +GK
Sbjct: 8 FKEAFELFDSERTGFITKEGLQTVLK-QFGVRVEPAA----FNEMFN----EADATGNGK 58
Query: 190 ISFQDF-------QQSVTDEPLLLEAF 209
I F +F + T E +L +AF
Sbjct: 59 IQFPEFLSMMGRRMKQTTSEDILRQAF 85
Score = 40.5 bits (96), Expect = 7e-05
Identities = 18/124 (14%), Positives = 45/124 (36%), Gaps = 18/124 (14%)
Query: 74 RVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTN-EELIKF 132
+ V ++ V +F D +G I E++ + ++ T E++++
Sbjct: 29 QTVLKQFGVR----VEPAAF-NEMFNEADATGNGKIQFPEFLSMMGRRMKQTTSEDILRQ 83
Query: 133 TFLIYDLNNDGFITREEMFQLLRNSLISHPQDED-PDEGVRDLVELALRKMDYDKDGKIS 191
F +D G+I + + L N + + + + + + G+I
Sbjct: 84 AFRTFDPEGTGYIPKAALQDALLN------LGDRLKPHEFAEFLGIT----ETE-KGQIR 132
Query: 192 FQDF 195
+ +F
Sbjct: 133 YDNF 136
Score = 35.9 bits (84), Expect = 0.003
Identities = 18/107 (16%), Positives = 30/107 (28%), Gaps = 22/107 (20%)
Query: 98 FCAFDRLCDGVIHLDEWVLGLSCFLRG-----TNEELIKFTFLI--YDLNNDGFITREEM 150
F FD G I + L L+ + + D +G I E
Sbjct: 12 FELFDSERTGFITKEG----LQTVLKQFGVRVEPAAFNE---MFNEADATGNGKIQFPEF 64
Query: 151 FQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 197
++ + ++ +R A R D + G I Q
Sbjct: 65 LSMMGR----RMKQTTSEDILRQ----AFRTFDPEGTGYIPKAALQD 103
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100
proteins, EF-; 1.94A {Homo sapiens}
Length = 104
Score = 39.5 bits (92), Expect = 1e-04
Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 128 ELIKFTFLIYDLN--NDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYD 185
+++ TF Y + + + E+ +LL L S + + L + +D +
Sbjct: 13 DVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKL----MSNLDSN 68
Query: 186 KDGKISFQDF 195
+D ++ FQ++
Sbjct: 69 RDNEVDFQEY 78
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 39.5 bits (93), Expect = 2e-04
Identities = 8/73 (10%), Positives = 22/73 (30%), Gaps = 15/73 (20%)
Query: 125 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKM 182
E++ + ++ G I+ + R L P D +K+
Sbjct: 10 LEEKVDESDVRIYFNEKSSGGKISIDNASYNAR-KLGLAPSSID------------EKKI 56
Query: 183 DYDKDGKISFQDF 195
++++ +
Sbjct: 57 KELYGDNLTYEQY 69
Score = 39.1 bits (92), Expect = 2e-04
Identities = 20/123 (16%), Positives = 43/123 (34%), Gaps = 23/123 (18%)
Query: 75 VVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTN--EELIKF 132
R+L + + L + ++++ LS + + EELIK
Sbjct: 39 YNARKLGLA----PSSIDEKK-----IKELYGDNLTYEQYLEYLSICVHDKDNVEELIKM 89
Query: 133 TFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISF 192
F +D N G++T+ +M +L D++ + + + I +
Sbjct: 90 -FAHFDNNCTGYLTKSQMKNILTT-WGDALTDQEAIDALNAF----------SSEDNIDY 137
Query: 193 QDF 195
+ F
Sbjct: 138 KLF 140
Score = 35.7 bits (83), Expect = 0.003
Identities = 19/119 (15%), Positives = 38/119 (31%), Gaps = 24/119 (20%)
Query: 89 TEEILME--RIFCAFDRLCDGVIHLDEWVLGLSCFLRG-----TNEELIKFTFLIYDLNN 141
EE + E ++ G I +D S R ++ + K
Sbjct: 10 LEEKVDESDVRIYFNEKSSGGKISIDN----ASYNARKLGLAPSSIDEKK-----IKELY 60
Query: 142 DGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVT 200
+T E+ + L D+D E +L++ D + G ++ + +T
Sbjct: 61 GDNLTYEQYLEYLS----ICVHDKDNVE---ELIK-MFAHFDNNCTGYLTKSQMKNILT 111
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 39.4 bits (93), Expect = 2e-04
Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 12/77 (15%)
Query: 125 TNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDED-PDEGVRDLVELALRKMD 183
++E++ F D +G I E+ QLL N + V +L ++++
Sbjct: 74 QSKEMLD-AFRALDKEGNGTIQEAELRQLLLNL------GDALTSSEVEEL----MKEVS 122
Query: 184 YDKDGKISFQDFQQSVT 200
DG I+++ F +
Sbjct: 123 VSGDGAINYESFVDMLV 139
Score = 35.2 bits (82), Expect = 0.006
Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 12/69 (17%)
Query: 127 EELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDK 186
+ I+ F I+D +NDG ++ EE+ LR SL +P + + + + +
Sbjct: 4 ADQIQECFQIFDKDNDGKVSIEELGSALR-SLGKNPTNAE----LNTIKG------QLNA 52
Query: 187 DGKISFQDF 195
F
Sbjct: 53 KE-FDLATF 60
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 39.8 bits (94), Expect = 2e-04
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 13/66 (19%)
Query: 130 IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGK 189
+K F + D++ DGF+++E++ + L P D++ L M + G
Sbjct: 20 MKEAFSMIDVDRDGFVSKEDIKAISE-QLGRAPDDKE------------LTAMLKEAPGP 66
Query: 190 ISFQDF 195
++F F
Sbjct: 67 LNFTMF 72
Score = 39.4 bits (93), Expect = 2e-04
Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 13/92 (14%)
Query: 106 DGVIHLDEWVLGLSCFLRGTN-EELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQD 164
G ++ ++ S L GT+ EE I+ F ++D + E + LL N
Sbjct: 64 PGPLNFTMFLSIFSDKLSGTDSEETIRNAFAMFDEQETKKLNIEYIKDLLEN------MG 117
Query: 165 ED-PDEGVRDLVELALRKMDYDKDGKISFQDF 195
++ + +R + A + GK + F
Sbjct: 118 DNFNKDEMRMTFKEA----PVE-GGKFDYVKF 144
Score = 34.8 bits (81), Expect = 0.009
Identities = 14/124 (11%), Positives = 37/124 (29%), Gaps = 24/124 (19%)
Query: 81 LHNTFDLVTEEILME--RIFCAFDRLCDGVIHLDEWVLGLSCFLRG-----TNEELIKFT 133
+ ++ + E F D DG + ++ + ++EL
Sbjct: 5 ASGVLTKLPQKQIQEMKEAFSMIDVDRDGFVSKED----IKAISEQLGRAPDDKELTA-- 58
Query: 134 FLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQ 193
++ + G + + D +E +R+ A D + K++ +
Sbjct: 59 -MLKE--APGPLNFTMFLSIFS----DKLSGTDSEETIRN----AFAMFDEQETKKLNIE 107
Query: 194 DFQQ 197
+
Sbjct: 108 YIKD 111
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding
protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Length = 113
Score = 38.8 bits (90), Expect = 2e-04
Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 128 ELIKFTFLIYDLN--NDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYD 185
+++ TF Y + + + E+ +LL L S + + L + +D +
Sbjct: 22 DVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKL----MSNLDSN 77
Query: 186 KDGKISFQDF 195
+D ++ FQ++
Sbjct: 78 RDNEVDFQEY 87
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 39.5 bits (93), Expect = 2e-04
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 10/82 (12%)
Query: 123 RGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDED-PDEGVRDLVELALRK 181
+E ++ F +D G I+ E+ +L+ E ++ D+
Sbjct: 81 GTAADEFME-AFKTFDREGQGLISSAEIRNVLKML------GERITEDQCNDIFTFC--D 131
Query: 182 MDYDKDGKISFQDFQQSVTDEP 203
+ D DG I ++D + V P
Sbjct: 132 IREDIDGNIKYEDLMKKVMAGP 153
Score = 36.8 bits (86), Expect = 0.002
Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 14/75 (18%)
Query: 125 TNEEL--IKFTFLIYDL--NNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALR 180
T +E+ ++ F ++D DG + ++ LLR L +P + V
Sbjct: 4 TKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLR-CLGMNPTEAQ----VHQHGG---- 54
Query: 181 KMDYDKDGKISFQDF 195
+ ++
Sbjct: 55 -TKKMGEKAYKLEEI 68
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO,
EF-hand calcium binding proteins, S100 proteins, protein
dynamics, binding protein; 2.10A {Homo sapiens} PDB:
2l0u_A 2l0v_A 2l50_A 2l51_A
Length = 100
Score = 38.2 bits (89), Expect = 3e-04
Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 7/71 (9%)
Query: 128 ELIKFTFLIY---DLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDY 184
++ F Y I++ ++L+ L D + L ++ +D
Sbjct: 11 IVLVENFYKYVSKYSLVKNKISKSSFREMLQKELNHMLSDTGNRKAADKL----IQNLDA 66
Query: 185 DKDGKISFQDF 195
+ DG+ISF ++
Sbjct: 67 NHDGRISFDEY 77
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 39.2 bits (92), Expect = 3e-04
Identities = 25/124 (20%), Positives = 42/124 (33%), Gaps = 22/124 (17%)
Query: 74 RVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTN-EELIKF 132
R F L TE+ L + G I+ ++ + GT+ E++I
Sbjct: 80 RATFDSLGRL----CTEQELDSMV-----AEAPGPINFTMFLTIFGDRIAGTDEEDVIVN 130
Query: 133 TFLIYDLNNDGFITREEMFQLLRNSLISHPQDED-PDEGVRDLVELALRKMDYDKDGKIS 191
F ++D DG E + + L E + V L + D +G I
Sbjct: 131 AFNLFD-EGDGKCKEETLKRSLTT------WGEKFSQDEVDQA----LSEAPIDGNGLID 179
Query: 192 FQDF 195
+ F
Sbjct: 180 IKKF 183
Score = 39.2 bits (92), Expect = 4e-04
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 13/66 (19%)
Query: 130 IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGK 189
K F + D + DGFI++ ++ SL +++ L M + G
Sbjct: 59 FKEAFQLIDQDKDGFISKNDIRATFD-SLGRLCTEQE------------LDSMVAEAPGP 105
Query: 190 ISFQDF 195
I+F F
Sbjct: 106 INFTMF 111
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 38.7 bits (91), Expect = 3e-04
Identities = 13/92 (14%), Positives = 38/92 (41%), Gaps = 13/92 (14%)
Query: 106 DGVIHLDEWVLGLSCFLRGTN-EELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQD 164
G ++ ++ + GT+ E+ ++ F ++D + GFI + + LL N
Sbjct: 62 PGQLNFTAFLTLFGEKVSGTDPEDALRNAFSMFDEDGQGFIPEDYLKDLLEN------MG 115
Query: 165 ED-PDEGVRDLVELALRKMDYDKDGKISFQDF 195
++ E ++++ + + + ++
Sbjct: 116 DNFSKEEIKNV----WKDAPLK-NKQFNYNKM 142
Score = 38.3 bits (90), Expect = 5e-04
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 13/66 (19%)
Query: 130 IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGK 189
+K F + D + DGFI E++ + SL P D++ L M + G+
Sbjct: 18 LKEAFTMIDQDRDGFIGMEDLKDMFS-SLGRVPPDDE------------LNAMLKECPGQ 64
Query: 190 ISFQDF 195
++F F
Sbjct: 65 LNFTAF 70
Score = 32.9 bits (76), Expect = 0.031
Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 22/108 (20%)
Query: 98 FCAFDRLCDGVIHLDEWVLGLSCFLRG-----TNEELIKFTFLIYDLNNDGFITREEMFQ 152
F D+ DG I +++ L ++EL ++ + G +
Sbjct: 22 FTMIDQDRDGFIGMED----LKDMFSSLGRVPPDDELNA---MLKEC--PGQLNFTAFLT 72
Query: 153 LLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVT 200
L + DP++ +R+ A D D G I + +
Sbjct: 73 LFGEKV----SGTDPEDALRN----AFSMFDEDGQGFIPEDYLKDLLE 112
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1irj_A*
Length = 113
Score = 38.0 bits (88), Expect = 4e-04
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 128 ELIKFTFLIYDLN--NDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYD 185
E I TF Y + + + + E +L+R L + + E+ +E V +E + +D +
Sbjct: 12 ETIINTFHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKV---IEHIMEDLDTN 68
Query: 186 KDGKISFQDF 195
D ++SF++F
Sbjct: 69 ADKQLSFEEF 78
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural
genomics, PSI-B protein structure initiative, NEW YORK
structural genomics consortium; 1.54A {Homo sapiens}
PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Length = 93
Score = 37.5 bits (87), Expect = 4e-04
Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 128 ELIKFTFLIYDLN--NDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYD 185
+++ TF Y + + + E+ +LL L S + + L + +D +
Sbjct: 10 DVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKL----MSNLDSN 65
Query: 186 KDGKISFQDF 195
+D ++ FQ++
Sbjct: 66 RDNEVDFQEY 75
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response, metal
binding PR; 1.73A {Homo sapiens} PDB: 1odb_A* 2wc8_A
2wcf_A 2wce_A 1e8a_A 1gqm_A
Length = 95
Score = 36.7 bits (85), Expect = 8e-04
Identities = 14/70 (20%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 128 ELIKFTFLIYDLN--NDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYD 185
E I F Y + + +++ E+ QLL L + ++ + ++ + +D +
Sbjct: 12 EGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEI----FQGLDAN 67
Query: 186 KDGKISFQDF 195
+D ++ FQ+F
Sbjct: 68 QDEQVDFQEF 77
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1mr8_A
Length = 93
Score = 36.7 bits (85), Expect = 9e-04
Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 10/70 (14%)
Query: 128 ELIKFTFLIYDLN--NDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYD 185
I + Y L N + R+++ +LL + + + D ++L D +
Sbjct: 10 NSIIDVYHKYSLIKGNFHAVYRDDLKKLLETESPQYIRKKGADVWFKEL--------DIN 61
Query: 186 KDGKISFQDF 195
DG ++FQ+F
Sbjct: 62 TDGAVNFQEF 71
Score = 27.0 bits (60), Expect = 1.8
Identities = 7/55 (12%), Positives = 21/55 (38%)
Query: 77 FRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIK 131
++LL + + F D DG ++ E+++ + +++ +
Sbjct: 34 LKKLLETESPQYIRKKGADVWFKELDINTDGAVNFQEFLILVIKMGVAAHKKSHE 88
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP:
a.39.1.1
Length = 78
Score = 36.2 bits (84), Expect = 0.001
Identities = 14/70 (20%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 128 ELIKFTFLIYDLN--NDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYD 185
+K F Y + +++EE+ QL++ S + ++ +++D +
Sbjct: 7 AELKSIFEKYAAKEGDPNQLSKEELKQLIQAEFPSLLKGPR-------TLDDLFQELDKN 59
Query: 186 KDGKISFQDF 195
DG++SF++F
Sbjct: 60 GDGEVSFEEF 69
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 37.5 bits (88), Expect = 0.001
Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 125 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKM 182
+ K FL++D D IT ++ + R +L +P + + + ++
Sbjct: 3 SKAAADDFKEAFLLFDRTGDAKITASQVGDIAR-ALGQNPTNAE----INKILGNP--SK 55
Query: 183 DYDKDGKISFQDF 195
+ I+F++F
Sbjct: 56 EEMNAAAITFEEF 68
Score = 37.1 bits (87), Expect = 0.001
Identities = 17/103 (16%), Positives = 42/103 (40%), Gaps = 15/103 (14%)
Query: 102 DRLCDGVIHLDEWVLGLSCFLR----GTNEELIKFTFLIYDLNNDGFITREEMFQLLRNS 157
+ + I +E++ L GT E+ ++ ++D +G + E+ +L
Sbjct: 56 EEMNAAAITFEEFLPMLQAAANNKDQGTFEDFVE-GLRVFDKEGNGTVMGAELRHVLAT- 113
Query: 158 LISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVT 200
L +E+ +E ++ D +G I+++ F + +
Sbjct: 114 LGEKMTEEEVEELMKG---------QEDSNGCINYEAFVKHIM 147
Score = 35.6 bits (83), Expect = 0.004
Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 16/106 (15%)
Query: 98 FCAFDRLCDGVIHLDEWVLGLSCFLRG-----TNEELIKFTFLI-YDLNNDGFITREEMF 151
F FDR D I + + R TN E+ K + N IT EE
Sbjct: 14 FLLFDRTGDAKITASQ----VGDIARALGQNPTNAEINKILGNPSKEEMNAAAITFEEFL 69
Query: 152 QLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 197
+L+ + ++D D VE LR D + +G + + +
Sbjct: 70 PMLQAAA----NNKDQGT-FEDFVE-GLRVFDKEGNGTVMGAELRH 109
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 38.4 bits (90), Expect = 0.001
Identities = 10/72 (13%), Positives = 20/72 (27%), Gaps = 12/72 (16%)
Query: 127 EELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDK 186
I + + I + Q L G+ + ++ + +
Sbjct: 381 HTTILNPHIHLMGDESACIAYIRITQYLD------------AGGIPRTAQSEETRVWHRR 428
Query: 187 DGKISFQDFQQS 198
DGK F +S
Sbjct: 429 DGKWQIVHFHRS 440
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 37.4 bits (87), Expect = 0.001
Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 8/87 (9%)
Query: 126 NEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDP---DEGVRDLVELALRKM 182
+ F +D ++ E+ +L + HP + + R +V + M
Sbjct: 2 EVRQFRRLFAQLA-GDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAV----M 56
Query: 183 DYDKDGKISFQDFQQSVTDEPLLLEAF 209
D D GK+ F++F+ + +
Sbjct: 57 DSDTTGKLGFEEFKYLWNNIKKWQAIY 83
Score = 34.7 bits (80), Expect = 0.011
Identities = 22/142 (15%), Positives = 50/142 (35%), Gaps = 22/142 (15%)
Query: 70 QGLDRVVFR--ELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNE 127
L++VV R +L + F + T ++ D G + +E L ++
Sbjct: 27 NILNKVVTRHPDLKTDGFGIDTCRSMVA----VMDSDTTGKLGFEE-FKYLWNNIKK--- 78
Query: 128 ELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKD 187
+ + +D++ G I E+ + +E + + + + D+
Sbjct: 79 --WQAIYKQFDVDRSGTIGSSELPGAFEAA------GFHLNEHLYSM----IIRRYSDEG 126
Query: 188 GKISFQDFQQSVTDEPLLLEAF 209
G + F +F + + AF
Sbjct: 127 GNMDFDNFISCLVRLDAMFRAF 148
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein,
EF-hand, calcium regulation, oligomer neuronal
development, spine2; 2.03A {Danio rerio}
Length = 99
Score = 36.0 bits (83), Expect = 0.002
Identities = 12/70 (17%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 128 ELIKFTFLIYDLN--NDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYD 185
+ + F Y + + +++ E+ +LL L + V + + +D +
Sbjct: 10 DALITVFHNYSGSEGDKYKLSKGELKELLNAELTDFLMSQKDPMLVEKI----MNDLDSN 65
Query: 186 KDGKISFQDF 195
KD ++ F +F
Sbjct: 66 KDNEVDFNEF 75
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15,
EPS15; EH domain, EF-hand, solution structure, S100
protein; NMR {Mus musculus} SCOP: a.39.1.6
Length = 99
Score = 35.9 bits (83), Expect = 0.002
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 11/62 (17%)
Query: 134 FLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQ 193
+ + N G + + L+ S + PD + + +LA D D G +S Q
Sbjct: 17 YRQVEAGNTGRVLALDAAAFLKKSGL-------PDLILGKIWDLA----DTDGKGVLSKQ 65
Query: 194 DF 195
+F
Sbjct: 66 EF 67
Score = 34.0 bits (78), Expect = 0.008
Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 10/76 (13%)
Query: 95 ERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTN---EELIKFTFLIYDLNNDGFITREEMF 151
E+ + + G + + + FL+ + L K L D + G ++++E F
Sbjct: 14 EKYYRQVEAGNTGRVLALD----AAAFLKKSGLPDLILGKIWDLA-DTDGKGVLSKQEFF 68
Query: 152 QLLRNSLISHPQDEDP 167
LR L++ Q+
Sbjct: 69 VALR--LVACAQNGLE 82
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding
protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A
1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X*
3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A*
3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Length = 92
Score = 35.9 bits (83), Expect = 0.002
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 128 ELIKFTFLIYDLN--NDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYD 185
+ F Y + + + E+ +L+ N L ++ E V + + +D +
Sbjct: 9 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKV----METLDSN 64
Query: 186 KDGKISFQDF 195
DG+ FQ+F
Sbjct: 65 GDGECDFQEF 74
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium,
polymorphism, structural genomics, spine2, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
2kay_A
Length = 92
Score = 35.1 bits (81), Expect = 0.002
Identities = 12/70 (17%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Query: 128 ELIKFTFLIY--DLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYD 185
+ TF Y + ++R+E+ +L++ L E ++ ++ +D +
Sbjct: 10 TTMVTTFHKYSGREGSKLTLSRKELKELIKKELCLGEMKES-------SIDDLMKSLDKN 62
Query: 186 KDGKISFQDF 195
D +I F+++
Sbjct: 63 SDQEIDFKEY 72
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type
four-helix bundle, metal binding protein; NMR {Rattus
norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A
2l0p_A 2jpt_A
Length = 93
Score = 35.2 bits (81), Expect = 0.002
Identities = 14/70 (20%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 128 ELIKFTFLIYDLN--NDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYD 185
E + F + + ++++E+ LL+ L S + + V + ++++D +
Sbjct: 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKI----MKELDEN 64
Query: 186 KDGKISFQDF 195
DG++ FQ+F
Sbjct: 65 GDGEVDFQEF 74
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein;
2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A
2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Length = 106
Score = 35.2 bits (81), Expect = 0.003
Identities = 10/70 (14%), Positives = 28/70 (40%), Gaps = 9/70 (12%)
Query: 128 ELIKFTFLIYDLN--NDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYD 185
E + TF + ++ E +L+ L +D ++ ++ +D +
Sbjct: 22 ETVVTTFFTFARQEGRKDSLSVNEFKELVTQQLPHLLKDVGS-------LDEKMKSLDVN 74
Query: 186 KDGKISFQDF 195
+D ++ F ++
Sbjct: 75 QDSELKFNEY 84
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor
supressor, CAL binding protein; 1.30A {Homo sapiens}
PDB: 2rgi_A 4duq_A
Length = 98
Score = 35.2 bits (81), Expect = 0.003
Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 128 ELIKFTFLIYDLN--NDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYD 185
++ TF Y + +++ EM +LL L S ++ +EG++ L + +D +
Sbjct: 11 AVLVTTFHKYSSQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKL----MGSLDEN 66
Query: 186 KDGKISFQDF 195
D ++ FQ++
Sbjct: 67 SDQQVDFQEY 76
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding
protein; 1.45A {Homo sapiens} PDB: 3nsi_A 1kso_A 3nsk_A
3nsl_A
Length = 101
Score = 34.8 bits (80), Expect = 0.004
Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 128 ELIKFTFLIYDLN--NDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYD 185
I TF Y + + + E+ +LL+ L + E + + +D +
Sbjct: 10 AAIVCTFQEYAGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNKF----MSVLDTN 65
Query: 186 KDGKISFQDF 195
KD ++ F ++
Sbjct: 66 KDCEVDFVEY 75
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1ozo_A
Length = 95
Score = 34.8 bits (80), Expect = 0.004
Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 128 ELIKFTFLIYDLN--NDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYD 185
+I F Y + + +T+ E+ L+ L Q + V L L+ +D +
Sbjct: 9 GMIIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKL----LKDLDAN 64
Query: 186 KDGKISFQDF 195
D ++ F +F
Sbjct: 65 GDAQVDFSEF 74
>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100
protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2 PDB:
2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A
Length = 100
Score = 34.8 bits (80), Expect = 0.004
Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 141 NDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDF 195
D I + + +++ + + D + + K D ++D KI F +F
Sbjct: 22 RDDKIDKPSLLTMMKENFPNFLSACDKKG--TNYLADVFEKKDKNEDKKIDFSEF 74
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.005
Identities = 18/153 (11%), Positives = 46/153 (30%), Gaps = 39/153 (25%)
Query: 86 DLVTEEILMERIFCAFDRLCD-----------GVIHLD-EWVLG-LSCFLRGTNEELIKF 132
++ + + F L V+ ++ ++++ + R + +
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 133 TFLIYDLNNDG------FITREEMFQLLRNSLISHPQDEDPDEGV----------RDLVE 176
L ND ++R + + LR +L + P + V +
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL----LELRPAKNVLIDGVLGSGKTWVAL 168
Query: 177 LALRKMDYDKDGKISFQ----DFQQSVTDEPLL 205
Y K+ F+ + + + E +L
Sbjct: 169 DVCL--SYKVQCKMDFKIFWLNLKNCNSPETVL 199
Score = 36.4 bits (83), Expect = 0.008
Identities = 37/240 (15%), Positives = 78/240 (32%), Gaps = 59/240 (24%)
Query: 5 LMFQLLPLSFRQEVETLCKIFKKLLNSSSNAGVPISTSTPVVVQVSGLPPSNVTERYKGF 64
++ S R + T +K + + S ++ L P+ + +
Sbjct: 328 RRLSIIAESIRDGLATW-DNWKHVNCDKLTTIIESS--------LNVLEPAEYRKMFDRL 378
Query: 65 SPFSFQGLDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRG 124
S VF H + +L I+ + V+ +++ S +
Sbjct: 379 S----------VFPPSAH-----IPTILL-SLIWFDVIKSDVMVV-VNKLH-KYSLVEKQ 420
Query: 125 TNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISH---PQDEDPDEGVRDLVE----- 176
E T I + + + E + L S++ H P+ D D+ + ++
Sbjct: 421 PKE----STISIPSIYLELKVKLENEYA-LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475
Query: 177 -LA--LRKMD-YDKDGKIS--FQDF---QQSVTDEPLLLEAFGQCLPSDAARQSFLSTLQ 227
+ L+ ++ ++ F DF +Q + + A G S L+TLQ
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG----------SILNTLQ 525
Score = 35.2 bits (80), Expect = 0.015
Identities = 38/219 (17%), Positives = 72/219 (32%), Gaps = 51/219 (23%)
Query: 16 QEVETLCKIFKKLLNSSSNAGVPISTSTPVVVQVSGLPPSNVTERYKGFSPFSFQGLDRV 75
+ ++ L S S+ I L ++ L R+
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIK-----------LRIHSIQAE-----------LRRL 237
Query: 76 VFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVL------GLSCFLRGTNEEL 129
+ + N LV + + + AF+ C +L ++ FL
Sbjct: 238 LKSKPYENCL-LVLLNVQNAKAWNAFNLSCK--------ILLTTRFKQVTDFLSAATT-- 286
Query: 130 IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKM--DYDKD 187
T + D ++ T +E+ LL L PQD P E V L + + +D
Sbjct: 287 ---THISLDHHSMTL-TPDEVKSLLLKYLDCRPQDL-PRE-VLTTNPRRL-SIIAESIRD 339
Query: 188 GKISFQDFQQSVTDEPL--LLEAFGQCLPSDAARQSFLS 224
G ++ +++ V + L ++E+ L R+ F
Sbjct: 340 GLATWDNWKH-VNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Score = 27.1 bits (59), Expect = 5.7
Identities = 22/116 (18%), Positives = 43/116 (37%), Gaps = 28/116 (24%)
Query: 58 TERYKGFSPFSFQGLD-RVVFRELLHNT---------FDLVTEEILMERIFC----AFDR 103
E + + F LD R + +++ H++ + + + + C ++R
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543
Query: 104 LCDGVIHLDEWVLGLSCFLRGTNEELI--KFTFLI-YDLNND-GFITREEMFQLLR 155
L + ++ FL E LI K+T L+ L + I E Q+ R
Sbjct: 544 LVNAILD----------FLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100
family, EF-hand protein, complex (ligand/annexin),
ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2
PDB: 1nsh_A
Length = 99
Score = 34.4 bits (79), Expect = 0.005
Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 128 ELIKFTFLIY--DLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYD 185
E + F + N+ I++ E + L + Q++ + + ++K+D D
Sbjct: 13 ESLIAIFQKHAGRDGNNTKISKTEFLIFMNTELAAFTQNQKDPGVLDRM----MKKLDLD 68
Query: 186 KDGKISFQDF 195
DG++ FQ+F
Sbjct: 69 SDGQLDFQEF 78
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH
domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A
1f8h_A 1ff1_A
Length = 106
Score = 33.2 bits (76), Expect = 0.015
Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 22/86 (25%)
Query: 112 DEWVLGLSCFLRGTNEELIKFT--FLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDE 169
W + E+ K+ F +GF++ +++ +L NS + P +
Sbjct: 5 SPWAV--------KPEDKAKYDAIFDSLS-PVNGFLSGDKVKPVLLNSKL-------PVD 48
Query: 170 GVRDLVELALRKMDYDKDGKISFQDF 195
+ + EL+ D D DG + +F
Sbjct: 49 ILGRVWELS----DIDHDGMLDRDEF 70
Score = 25.1 bits (55), Expect = 9.1
Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 95 ERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLL 154
+ IF + +G + D+ V + + + L + L D+++DG + R+E +
Sbjct: 18 DAIFDSLSP-VNGFLSGDK-VKPVLLNSKLPVDILGRVWELS-DIDHDGMLDRDEFAVAM 74
Query: 155 R 155
Sbjct: 75 F 75
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2,
protein structure initiative, northeast structural
genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Length = 121
Score = 33.7 bits (77), Expect = 0.015
Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 20/85 (23%)
Query: 112 DEWVLGLSCFLRGTNEELIKFTFLIYDLN-NDGFITREEMFQLLRNSLISHPQDEDPDEG 170
D W + T EE K + L GFIT ++ S + P
Sbjct: 23 DTWAI--------TVEERAKHDQQFHSLKPISGFITGDQARNFFFQSGL-------PQPV 67
Query: 171 VRDLVELALRKMDYDKDGKISFQDF 195
+ + LA D + DG++ +F
Sbjct: 68 LAQIWALA----DMNNDGRMDQVEF 88
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free,
signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A
2cnp_A 2jtt_A
Length = 90
Score = 32.4 bits (74), Expect = 0.021
Identities = 9/51 (17%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 145 ITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDF 195
++++E+ +L++ L + +D + + + +D +KD +++FQ++
Sbjct: 29 LSKKELKELIQKELTIGSKLQDAE------IARLMEDLDRNKDQEVNFQEY 73
>1nub_A Basement membrane protein BM-40; extracellular module,
glycoprotein, anti-adhesive protein, C binding,
site-directed mutagenesis; HET: NAG; 2.80A {Homo
sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A*
1bmo_A*
Length = 229
Score = 32.6 bits (73), Expect = 0.070
Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 12/70 (17%)
Query: 127 EELIKFTFLIYDLN-NDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYD 185
+ + F D + DG+++ E+ L + + E D D
Sbjct: 154 IFPVHWQFGQLDQHPIDGYLSHTELAPLRAPLI-------PMEHCTTRFFETC----DLD 202
Query: 186 KDGKISFQDF 195
D I+ ++
Sbjct: 203 NDKYIALDEW 212
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 33.0 bits (74), Expect = 0.085
Identities = 16/106 (15%), Positives = 31/106 (29%), Gaps = 17/106 (16%)
Query: 130 IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGK 189
I D N D + +E+ L+ I R+ D+ +
Sbjct: 13 IHSCLRKADKNKDNKMNFKELKDFLKELNIQVD---------DGYARKIFRECDHSQTDS 63
Query: 190 ISFQDFQQ---SVTDEPLLLEAFGQCLPSDAAR-----QSFLSTLQ 227
+ ++ + +T + AF + S +FL Q
Sbjct: 64 LEDEEIETFYKMLTQRAEIDRAFEEAAGSAETLSVERLVTFLQHQQ 109
>2ccl_B Endo-1,4-beta-xylanase Y; cell adhesion, cohesin/dockerin complex,
cellulosome, cohesi dockerin, scaffolding, cellulose
degradation; 2.03A {Clostridium thermocellum} SCOP:
a.139.1.1 PDB: 1ohz_B
Length = 63
Score = 30.2 bits (69), Expect = 0.086
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 11/58 (18%)
Query: 138 DLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDF 195
D+N DG I + +L+ S++ L + A + D DK+G I+ D
Sbjct: 6 DVNGDGTINSTD-LTMLKRSVL----------RAITLTDDAKARADVDKNGSINAADV 52
>2y3n_B Cellulosomal family-48 processive glycoside hydro; structrual
protein-hydrolase complex, cellulosome; 1.90A
{Bacteroides cellulosolvens}
Length = 71
Score = 30.0 bits (68), Expect = 0.100
Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 12/65 (18%)
Query: 132 FTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKIS 191
F L DLN DG I + +L S + +E K D + DG I+
Sbjct: 2 FVKLKGDLNGDGVINMAD-VMILAQSFGKAIGNPGVNE-----------KADLNNDGVIN 49
Query: 192 FQDFQ 196
D
Sbjct: 50 SDDAI 54
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo
sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Length = 139
Score = 31.1 bits (70), Expect = 0.12
Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 14/73 (19%)
Query: 125 TNEELIKFT--FLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKM 182
++ + F +G IT + + S + P+ + + +LA
Sbjct: 46 VGKDKPTYDEIFYTLS-PVNGKITGANAKKEMVKSKL-------PNTVLGKIWKLA---- 93
Query: 183 DYDKDGKISFQDF 195
D DKDG + ++F
Sbjct: 94 DVDKDGLLDDEEF 106
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 32.1 bits (72), Expect = 0.17
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 142 DGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 197
D ++ E+ +L + HP D D D + MD D GK+ F++F+
Sbjct: 744 DMEVSATELMNILNKVVTRHP-DLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKY 798
Score = 28.2 bits (62), Expect = 2.4
Identities = 9/68 (13%), Positives = 23/68 (33%), Gaps = 16/68 (23%)
Query: 131 KFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVR---DLVELALRKMDYDKD 187
+ + ++ + G I E+ + G + + +R+ D+
Sbjct: 807 QGIYKRFETDRSGTIGSNELPGAFEAA------------GFHLNQHIYSMIIRRYS-DET 853
Query: 188 GKISFQDF 195
G + F +F
Sbjct: 854 GNMDFDNF 861
Score = 27.8 bits (61), Expect = 3.2
Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 140 NNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 197
+D I+ +E+ +L N +IS +D + + + MD D +GK+ +F
Sbjct: 545 GDDMEISVKELQTIL-NRIISKHKDLRTNGFSLESCRSMVNLMDRDGNGKLGLVEFNI 601
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 31.7 bits (71), Expect = 0.23
Identities = 13/78 (16%), Positives = 25/78 (32%), Gaps = 1/78 (1%)
Query: 120 CFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELAL 179
+ D I+ E+ +LR L D D + ++ +
Sbjct: 523 IEANEEDIGDGFRRLFAQLAGEDAEISAFELQTILRRVLAKRE-DIKSDGFSIETCKIMV 581
Query: 180 RKMDYDKDGKISFQDFQQ 197
+D D GK+ ++F
Sbjct: 582 DMLDEDGSGKLGLKEFYI 599
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases,
like, EF-hand, structural genomics, structural genomics
CON SGC, hydrolase; 1.80A {Homo sapiens}
Length = 174
Score = 29.9 bits (67), Expect = 0.47
Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 17/126 (13%)
Query: 70 QGLDRVVFRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEEL 129
L++ + + F L L+ + +G + +E+
Sbjct: 28 GLLNQELLTGPPGDMFSLDECRSLV----ALMELKVNGRLDQEEFARLWKRL------VH 77
Query: 130 IKFTFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGK 189
+ F + G + ++++ + N+ + L+ L + D G+
Sbjct: 78 YQHVFQKVQ-TSPGVLLSSDLWKAIENTDFLRGIFISRE-----LLHLVTLRYS-DSVGR 130
Query: 190 ISFQDF 195
+SF
Sbjct: 131 VSFPSL 136
Score = 29.1 bits (65), Expect = 0.76
Identities = 10/71 (14%), Positives = 24/71 (33%), Gaps = 3/71 (4%)
Query: 142 DGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTD 201
I ++ LL L++ P + D + M+ +G++ ++F +
Sbjct: 18 GSDIDATQLQGLLNQELLTGPPGDMFSL---DECRSLVALMELKVNGRLDQEEFARLWKR 74
Query: 202 EPLLLEAFGQC 212
F +
Sbjct: 75 LVHYQHVFQKV 85
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase;
HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Length = 479
Score = 30.2 bits (69), Expect = 0.54
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 147 REEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDK-DGKISFQDFQ--QSVTD 201
++ L L H DP + RDL E L +M+ K + + SF D V D
Sbjct: 222 QKAFLTQLDELLTEHRMTWDPAQPPRDLTEAFLAEMEKAKGNPESSFNDENLRIVVAD 279
>4exo_A Methyl-accepting chemotaxis protein; signaling protein, chemotaxis
receptor, PAS domain, four HEL bundle; HET: MSE; 1.90A
{Vibrio parahaemolyticus}
Length = 146
Score = 29.2 bits (66), Expect = 0.61
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 10/53 (18%)
Query: 146 TREEMF----QLLRN------SLISHPQDEDPDEGVRDLVELALRKMDYDKDG 188
R+E+ + L+ + I D D + + + L+ M ++ DG
Sbjct: 6 DRQELIDARKKELKAYMMMGVTAIKPLYDSDVNGSNKQAAKEILKAMRFESDG 58
>2qhk_A Methyl-accepting chemotaxis protein; structural genomics, PSI-2,
MCSG, protein structur initiative; 1.91A {Vibrio
parahaemolyticus}
Length = 174
Score = 28.5 bits (64), Expect = 1.1
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 10/53 (18%)
Query: 146 TREEMF----QLLRN------SLISHPQDEDPDEGVRDLVELALRKMDYDKDG 188
R+E+ + L+ + I D D + + + L+ M ++ DG
Sbjct: 13 DRQELIDARKKELKAYMMMGVTAIKPLYDSDVNGSNKQAAKEILKAMRFESDG 65
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling
protein; 2.65A {Streptococcus agalactiae}
Length = 250
Score = 28.8 bits (65), Expect = 1.2
Identities = 7/39 (17%), Positives = 18/39 (46%), Gaps = 7/39 (17%)
Query: 143 GFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRK 181
++ ++ +L Q++ D+ +DL+ LA +
Sbjct: 201 NMLSNADIATVLT-------QEKTLDDKNQDLITLANHR 232
>1daq_A Endoglucanase SS, CELS; cellulose degradation, cellulosome,
calcium-binding, hydrolase; NMR {Clostridium
thermocellum} SCOP: a.139.1.1 PDB: 1dav_A
Length = 71
Score = 26.8 bits (60), Expect = 1.8
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 13/63 (20%)
Query: 133 TFLIYDLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISF 192
T L D+N+DG + + L+ ++ + D D ++DG+++
Sbjct: 3 TKLYGDVNDDGKVNSTD-AVALKRYVLRSGISINTDNA------------DLNEDGRVNS 49
Query: 193 QDF 195
D
Sbjct: 50 TDL 52
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase,
alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase;
HET: HEM BHF; 2.70A {Homo sapiens}
Length = 507
Score = 27.9 bits (63), Expect = 2.6
Identities = 6/59 (10%), Positives = 17/59 (28%), Gaps = 2/59 (3%)
Query: 147 REEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLL 205
+ + + H + P RD+++ + +K + E +
Sbjct: 225 NRNFSNFILDKFLRHCESLRPGAAPRDMMDAFILSA--EKKAAGDSHGGGARLDLENVP 281
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases,
PSTP/PPP, structural genomics, PSI, protein structure
initiative; 1.95A {Mycobacterium tuberculosis} SCOP:
d.219.1.1 PDB: 2cm1_A
Length = 237
Score = 27.5 bits (62), Expect = 3.0
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 8/39 (20%)
Query: 143 GFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRK 181
++ E + + L+ + E L+ELALR
Sbjct: 192 DPVSDETILEALQ--------IPEVAESAHRLIELALRG 222
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese,
phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A
2jft_A 2v06_A
Length = 234
Score = 27.5 bits (62), Expect = 3.2
Identities = 8/39 (20%), Positives = 11/39 (28%), Gaps = 8/39 (20%)
Query: 143 GFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRK 181
+ + DP VR LVE+A
Sbjct: 190 AAADEALIVDAATS--------PDPQVAVRRLVEVANDA 220
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family
phosphatase, hydrolase; 1.28A {Synechococcus elongatus}
PDB: 2j86_A 2y09_A 2xzv_A
Length = 240
Score = 27.6 bits (62), Expect = 3.5
Identities = 5/39 (12%), Positives = 12/39 (30%), Gaps = 8/39 (20%)
Query: 143 GFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRK 181
+T + + L + + + LV+ A
Sbjct: 197 EELTDDVISIYLS--------EPNVQKAAAALVDAAKTH 227
>4fl4_A Glycoside hydrolase family 9; structural genomics,
montreal-kingston bacterial structural initiative, BSGI,
dockerin; 2.80A {Clostridium thermocellum} PDB: 3p0d_A
Length = 88
Score = 26.1 bits (58), Expect = 3.9
Identities = 10/58 (17%), Positives = 24/58 (41%), Gaps = 9/58 (15%)
Query: 138 DLNNDGFITREEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDF 195
D+N+DG + + LL+ ++ + + D ++DG+++ D
Sbjct: 24 DVNDDGKVNSTD-LTLLKRYVLKAVSTLPSSKA--------EKNADVNRDGRVNSSDV 72
>3pyw_A S-layer protein SAP; SLH-domains, polysaccharide binding, GST-SLH,
cell WALL, STR genomics, PSI-2, protein structure
initiative; 1.80A {Bacillus anthracis}
Length = 203
Score = 27.0 bits (60), Expect = 4.3
Identities = 7/22 (31%), Positives = 9/22 (40%), Gaps = 5/22 (22%)
Query: 142 DGF-----ITREEMFQLLRNSL 158
+GF I R M LL +
Sbjct: 92 NGFEPNGKIDRVSMASLLVEAY 113
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR
family, gene regulation; 2.30A {Streptomyces coelicolor}
Length = 195
Score = 26.9 bits (60), Expect = 4.4
Identities = 8/62 (12%), Positives = 20/62 (32%), Gaps = 3/62 (4%)
Query: 148 EEMFQLLRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLE 207
E + + ++++ P V D + ++ +G + + P L E
Sbjct: 60 ELLPPAVARAVLAADPGAAPLTAVLDAMSQVGAQLVAQVEG---AAQRRAVIDASPELQE 116
Query: 208 AF 209
Sbjct: 117 RE 118
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.140 0.415
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,656,641
Number of extensions: 228816
Number of successful extensions: 1745
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1186
Number of HSP's successfully gapped: 383
Length of query: 229
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 139
Effective length of database: 4,188,903
Effective search space: 582257517
Effective search space used: 582257517
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 56 (25.2 bits)