BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8448
(482 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 147/298 (49%), Gaps = 23/298 (7%)
Query: 88 PTQLSKQIKFGSKSH---VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQD 144
P + + +KF H V +FSP+G++L + S D I++W GK K +
Sbjct: 30 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--- 86
Query: 145 NFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRD 204
+ + +A+S DS +L S S +KIW +++G+CL+ L K HS V C F+
Sbjct: 87 -----KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQ 140
Query: 205 NSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNL 264
++ I++ SFD VRI +K+GK LK HS V+ + F DG ++S+S DG ++W+
Sbjct: 141 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 200
Query: 265 KTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKR 323
+ +C T + + V+ + P N ++ + NT+ + + +G+ +++ + K
Sbjct: 201 ASGQCLKTL--IDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 257
Query: 324 EGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTV 381
E + G+WI ED ++ + +Q + +Q LQ T V ++T
Sbjct: 258 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-------KEIVQKLQGHTDVVISTA 308
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 149/303 (49%), Gaps = 23/303 (7%)
Query: 83 EEEKYPTQLSKQIKFGSKSH---VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLK 139
+ + P + + +KF H V +FSP+G++L + S D I++W GK K +
Sbjct: 9 QSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 68
Query: 140 YQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCI 199
+ + +A+S DS +L S S +KIW +++G+CL+ L K HS V C
Sbjct: 69 GH--------KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCC 119
Query: 200 QFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTV 259
F+ ++ I++ SFD VRI +K+GK LK HS V+ + F DG ++S+S DG
Sbjct: 120 NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 179
Query: 260 KMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSL 318
++W+ + +C T + + V+ + P N ++ + NT+ + + +G+ +++
Sbjct: 180 RIWDTASGQCLKTL--IDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTY 236
Query: 319 SSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSL 378
+ K E + G+WI ED ++ + +Q + +Q LQ T V +
Sbjct: 237 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-------KEIVQKLQGHTDVVI 289
Query: 379 NTV 381
+T
Sbjct: 290 STA 292
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 147/298 (49%), Gaps = 23/298 (7%)
Query: 88 PTQLSKQIKFGSKSH---VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQD 144
P + + +KF H V +FSP+G++L + S D I++W GK K +
Sbjct: 32 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--- 88
Query: 145 NFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRD 204
+ + +A+S DS +L S S +KIW +++G+CL+ L K HS V C F+
Sbjct: 89 -----KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQ 142
Query: 205 NSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNL 264
++ I++ SFD VRI +K+GK LK HS V+ + F DG ++S+S DG ++W+
Sbjct: 143 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 202
Query: 265 KTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKR 323
+ +C T + + V+ + P N ++ + NT+ + + +G+ +++ + K
Sbjct: 203 ASGQCLKTL--IDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 259
Query: 324 EGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTV 381
E + G+WI ED ++ + +Q + +Q LQ T V ++T
Sbjct: 260 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-------KEIVQKLQGHTDVVISTA 310
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 147/298 (49%), Gaps = 23/298 (7%)
Query: 88 PTQLSKQIKFGSKSH---VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQD 144
P + + +KF H V +FSP+G++L + S D I++W GK K +
Sbjct: 4 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--- 60
Query: 145 NFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRD 204
+ + +A+S DS +L S S +KIW +++G+CL+ L K HS V C F+
Sbjct: 61 -----KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQ 114
Query: 205 NSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNL 264
++ I++ SFD VRI +K+GK LK HS V+ + F DG ++S+S DG ++W+
Sbjct: 115 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 174
Query: 265 KTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKR 323
+ +C T + + V+ + P N ++ + NT+ + + +G+ +++ + K
Sbjct: 175 ASGQCLKTL--IDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 231
Query: 324 EGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTV 381
E + G+WI ED ++ + +Q + +Q LQ T V ++T
Sbjct: 232 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-------KEIVQKLQGHTDVVISTA 282
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 147/298 (49%), Gaps = 23/298 (7%)
Query: 88 PTQLSKQIKFGSKSH---VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQD 144
P + + +KF H V +FSP+G++L + S D I++W GK K +
Sbjct: 25 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--- 81
Query: 145 NFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRD 204
+ + +A+S DS +L S S +KIW +++G+CL+ L K HS V C F+
Sbjct: 82 -----KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQ 135
Query: 205 NSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNL 264
++ I++ SFD VRI +K+GK LK HS V+ + F DG ++S+S DG ++W+
Sbjct: 136 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 195
Query: 265 KTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKR 323
+ +C T + + V+ + P N ++ + NT+ + + +G+ +++ + K
Sbjct: 196 ASGQCLKTL--IDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 252
Query: 324 EGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTV 381
E + G+WI ED ++ + +Q + +Q LQ T V ++T
Sbjct: 253 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-------KEIVQKLQGHTDVVISTA 303
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 149/303 (49%), Gaps = 23/303 (7%)
Query: 83 EEEKYPTQLSKQIKFGSKSH---VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLK 139
+ + P + + +KF H V +FSP+G++L + S D I++W GK K +
Sbjct: 9 QSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 68
Query: 140 YQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCI 199
+ + +A+S DS +L S S +KIW +++G+CL+ L K HS V C
Sbjct: 69 GH--------KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCC 119
Query: 200 QFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTV 259
F+ ++ I++ SFD VRI +K+GK LK HS V+ + F DG ++S+S DG
Sbjct: 120 NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 179
Query: 260 KMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSL 318
++W+ + +C T + + V+ + P N ++ + NT+ + + +G+ +++
Sbjct: 180 RIWDTASGQCLKTL--IDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTY 236
Query: 319 SSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSL 378
+ K E + G+WI ED ++ + +Q + +Q LQ T V +
Sbjct: 237 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-------KEIVQKLQGHTDVVI 289
Query: 379 NTV 381
+T
Sbjct: 290 STA 292
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 58/107 (54%)
Query: 168 GSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKM 227
GS + + K + L+ H+ V+ ++FS + + ++S D ++I G GK
Sbjct: 4 GSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 63
Query: 228 LKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFK 274
K GH ++D+ +++D + ++SAS D T+K+W++ + +C T K
Sbjct: 64 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 110
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 147/298 (49%), Gaps = 23/298 (7%)
Query: 88 PTQLSKQIKFGSKSH---VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQD 144
P + + +KF H V +FSP+G++L + S D I++W GK K +
Sbjct: 7 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--- 63
Query: 145 NFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRD 204
+ + +A+S DS +L S S +KIW +++G+CL+ L K HS V C F+
Sbjct: 64 -----KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQ 117
Query: 205 NSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNL 264
++ I++ SFD VRI +K+GK LK HS V+ + F DG ++S+S DG ++W+
Sbjct: 118 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 177
Query: 265 KTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKR 323
+ +C T + + V+ + P N ++ + NT+ + + +G+ +++ + K
Sbjct: 178 ASGQCLKTL--IDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 234
Query: 324 EGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTV 381
E + G+WI ED ++ + +Q + +Q LQ T V ++T
Sbjct: 235 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-------KEIVQKLQGHTDVVISTA 285
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 149/303 (49%), Gaps = 23/303 (7%)
Query: 83 EEEKYPTQLSKQIKFGSKSH---VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLK 139
+ + P + + +KF H V +FSP+G++L + S D I++W GK K +
Sbjct: 8 QSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 67
Query: 140 YQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCI 199
+ + +A+S DS +L S S +KIW +++G+CL+ L K HS V C
Sbjct: 68 GH--------KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCC 118
Query: 200 QFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTV 259
F+ ++ I++ SFD VRI +K+GK LK HS V+ + F DG ++S+S DG
Sbjct: 119 NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 178
Query: 260 KMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSL 318
++W+ + +C T + + V+ + P N ++ + NT+ + + +G+ +++
Sbjct: 179 RIWDTASGQCLKTL--IDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTY 235
Query: 319 SSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSL 378
+ K E + G+WI ED ++ + +Q + +Q LQ T V +
Sbjct: 236 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-------KEIVQKLQGHTDVVI 288
Query: 379 NTV 381
+T
Sbjct: 289 STA 291
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 147/298 (49%), Gaps = 23/298 (7%)
Query: 88 PTQLSKQIKFGSKSH---VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQD 144
P + + +KF H V +FSP+G++L + S D I++W GK K +
Sbjct: 8 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--- 64
Query: 145 NFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRD 204
+ + +A+S DS +L S S +KIW +++G+CL+ L K HS V C F+
Sbjct: 65 -----KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQ 118
Query: 205 NSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNL 264
++ I++ SFD VRI +K+GK LK HS V+ + F DG ++S+S DG ++W+
Sbjct: 119 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178
Query: 265 KTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKR 323
+ +C T + + V+ + P N ++ + NT+ + + +G+ +++ + K
Sbjct: 179 ASGQCLKTL--IDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 235
Query: 324 EGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTV 381
E + G+WI ED ++ + +Q + +Q LQ T V ++T
Sbjct: 236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-------KEIVQKLQGHTDVVISTA 286
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 147/298 (49%), Gaps = 23/298 (7%)
Query: 88 PTQLSKQIKFGSKSH---VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQD 144
P + + +KF H V +FSP+G++L + S D I++W GK K +
Sbjct: 8 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--- 64
Query: 145 NFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRD 204
+ + +A+S DS +L S S +KIW +++G+CL+ L K HS V C F+
Sbjct: 65 -----KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQ 118
Query: 205 NSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNL 264
++ I++ SFD VRI +K+GK LK HS V+ + F DG ++S+S DG ++W+
Sbjct: 119 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178
Query: 265 KTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKR 323
+ +C T + + V+ + P N ++ + NT+ + + +G+ +++ + K
Sbjct: 179 ASGQCLKTL--IDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 235
Query: 324 EGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTV 381
E + G+WI ED ++ + +Q + +Q LQ T V ++T
Sbjct: 236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-------KEIVQKLQGHTDVVISTA 286
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 147/298 (49%), Gaps = 23/298 (7%)
Query: 88 PTQLSKQIKFGSKSH---VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQD 144
P + + +KF H V +FSP+G++L + S D I++W GK K +
Sbjct: 9 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--- 65
Query: 145 NFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRD 204
+ + +A+S DS +L S S +KIW +++G+CL+ L K HS V C F+
Sbjct: 66 -----KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQ 119
Query: 205 NSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNL 264
++ I++ SFD VRI +K+GK LK HS V+ + F DG ++S+S DG ++W+
Sbjct: 120 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 179
Query: 265 KTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKR 323
+ +C T + + V+ + P N ++ + NT+ + + +G+ +++ + K
Sbjct: 180 ASGQCLKTL--IDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 236
Query: 324 EGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTV 381
E + G+WI ED ++ + +Q + +Q LQ T V ++T
Sbjct: 237 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-------KEIVQKLQGHTDVVISTA 287
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/311 (27%), Positives = 150/311 (48%), Gaps = 25/311 (8%)
Query: 77 AAMKDQEEEKYPTQLSKQ--IKFGSKSH---VECARFSPDGQYLITGSVDGFIEVWNFTT 131
AM + PT + +KF H V +FSP+G++L + S D I++W
Sbjct: 1 GAMGSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD 60
Query: 132 GKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKA 191
GK K + + + +A+S DS +L S S +KIW +++G+CL+ L K
Sbjct: 61 GKFEKTISGH--------KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KG 111
Query: 192 HSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVL 251
HS V C F+ ++ I++ SFD VRI +K+GK LK HS V+ + F DG ++
Sbjct: 112 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 171
Query: 252 SASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM- 310
S+S DG ++W+ + +C T + + V+ + P N ++ + NT+ + +
Sbjct: 172 SSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYS 228
Query: 311 QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCL 370
+G+ +++ + K E + G+WI ED ++ + +Q + +Q L
Sbjct: 229 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-------KEIVQKL 281
Query: 371 QEETGVSLNTV 381
Q T V ++T
Sbjct: 282 QGHTDVVISTA 292
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 118 bits (296), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 79/285 (27%), Positives = 141/285 (49%), Gaps = 20/285 (7%)
Query: 98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLA 157
G V +FSP+G++L + S D I++W GK K + + + +A
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--------KLGISDVA 75
Query: 158 YSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYV 217
+S DS +L S S +KIW +++G+CL+ L K HS V C F+ ++ I++ SFD V
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 218 RIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLG 277
RI +K+GK LK HS V+ + F DG ++S+S DG ++W+ + +C T +
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL--ID 192
Query: 278 ASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPR 336
+ V+ + P N ++ + NT+ + + +G+ +++ + K E +
Sbjct: 193 DDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 251
Query: 337 GEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTV 381
G+WI ED ++ + +Q + +Q LQ T V ++T
Sbjct: 252 GKWIVSGSEDNLVYIWNLQT-------KEIVQKLQGHTDVVISTA 289
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 118 bits (296), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 79/285 (27%), Positives = 141/285 (49%), Gaps = 20/285 (7%)
Query: 98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLA 157
G V +FSP+G++L + S D I++W GK K + + + +A
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--------KLGISDVA 75
Query: 158 YSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYV 217
+S DS +L S S +KIW +++G+CL+ L K HS V C F+ ++ I++ SFD V
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 218 RIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLG 277
RI +K+GK LK HS V+ + F DG ++S+S DG ++W+ + +C T +
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL--ID 192
Query: 278 ASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPR 336
+ V+ + P N ++ + NT+ + + +G+ +++ + K E +
Sbjct: 193 DDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 251
Query: 337 GEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTV 381
G+WI ED ++ + +Q + +Q LQ T V ++T
Sbjct: 252 GKWIVSGSEDNLVYIWNLQT-------KEIVQKLQGHTDVVISTA 289
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 118 bits (295), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 79/285 (27%), Positives = 140/285 (49%), Gaps = 20/285 (7%)
Query: 98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLA 157
G V +FSP+G++L S D I++W GK K + + + +A
Sbjct: 24 GHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGH--------KLGISDVA 75
Query: 158 YSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYV 217
+S DS +L S S +KIW +++G+CL+ L K HS V C F+ ++ I++ SFD V
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 218 RIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLG 277
RI +K+GK LK HS V+ + F DG ++S+S DG ++W+ + +C T +
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL--ID 192
Query: 278 ASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPR 336
+ V+ + P N ++ + NT+ + + +G+ +++ + K E +
Sbjct: 193 DDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 251
Query: 337 GEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTV 381
G+WI ED ++ + +Q + +Q LQ T V ++T
Sbjct: 252 GKWIVSGSEDNLVYIWNLQT-------KEIVQKLQGHTDVVISTA 289
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 116 bits (290), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 140/285 (49%), Gaps = 20/285 (7%)
Query: 98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLA 157
G V +FSP+G++L + S D I++W GK K + + + +A
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--------KLGISDVA 75
Query: 158 YSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYV 217
+S DS +L S S +KIW +++G+CL+ L K HS V C F+ ++ I++ SFD V
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 218 RIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLG 277
RI +K+G LK HS V+ + F DG ++S+S DG ++W+ + +C T +
Sbjct: 135 RIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL--ID 192
Query: 278 ASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPR 336
+ V+ + P N ++ + NT+ + + +G+ +++ + K E +
Sbjct: 193 DDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 251
Query: 337 GEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTV 381
G+WI ED ++ + +Q + +Q LQ T V ++T
Sbjct: 252 GKWIVSGSEDNMVYIWNLQT-------KEIVQKLQGHTDVVISTA 289
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 139/285 (48%), Gaps = 20/285 (7%)
Query: 98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLA 157
G V +FSP+G++L + S D I++W GK K + + + +A
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--------KLGISDVA 75
Query: 158 YSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYV 217
+S DS +L S S +KIW +++G+CL+ L K HS V C F+ ++ I++ SFD V
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 218 RIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLG 277
RI +K+G LK HS V+ + F DG ++S+S DG ++W+ + +C T +
Sbjct: 135 RIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL--ID 192
Query: 278 ASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPR 336
+ V+ + P N ++ + N + + + +G+ +++ + K E +
Sbjct: 193 DDNPPVSFVKFSP-NGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 251
Query: 337 GEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTV 381
G+WI ED ++ + +Q + +Q LQ T V ++T
Sbjct: 252 GKWIVSGSEDNMVYIWNLQT-------KEIVQKLQGHTDVVISTA 289
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 121/256 (47%), Gaps = 20/256 (7%)
Query: 94 QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAV 153
Q G S V FSPDGQ + + S D +++WN G++ + L + +V
Sbjct: 92 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHS--------SSV 142
Query: 154 MSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF 213
+A+S D + +AS S VK+W GQ L+ L HS V + FS D I +AS
Sbjct: 143 WGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT-GHSSSVWGVAFSPDGQTIASASD 200
Query: 214 DTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTF 273
D V++ ++G++L+ GHSS V + F+ DG ++ SAS D TVK+WN
Sbjct: 201 DKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN----RNGQLL 255
Query: 274 KSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTT 333
++L +VN + P + + + TV + N GQ++++L+
Sbjct: 256 QTLTGHSSSVNGVAFRP-DGQTIASASDDKTVKLWNRNGQLLQTLTG---HSSSVWGVAF 311
Query: 334 SPRGEWIYCVGEDMVL 349
SP G+ I +D +
Sbjct: 312 SPDGQTIASASDDKTV 327
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 128/274 (46%), Gaps = 25/274 (9%)
Query: 94 QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAV 153
Q G S V FSPDGQ + + S D +++WN G++ + L + +V
Sbjct: 133 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHS--------SSV 183
Query: 154 MSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF 213
+A+S D + +AS S VK+W GQ L+ L HS V + FS D I +AS
Sbjct: 184 WGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT-GHSSSVRGVAFSPDGQTIASASD 241
Query: 214 DTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTF 273
D V++ ++G++L+ GHSS VN + F DG ++ SAS D TVK+WN
Sbjct: 242 DKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN----RNGQLL 296
Query: 274 KSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTT 333
++L +V + P + + + TV + N GQ +++L+
Sbjct: 297 QTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQHLQTLTG---HSSSVWGVAF 352
Query: 334 SPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTL 367
SP G+ I +D + ++ + + L++TL
Sbjct: 353 SPDGQTIASASDD-----KTVKLWNRNGQLLQTL 381
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 131/276 (47%), Gaps = 29/276 (10%)
Query: 94 QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAV 153
Q G S V F PDGQ + + S D +++WN G++ + L + +V
Sbjct: 256 QTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHS--------SSV 306
Query: 154 MSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF 213
+A+S D + +AS S VK+W GQ L+ L HS V + FS D I +AS
Sbjct: 307 WGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLT-GHSSSVWGVAFSPDGQTIASASD 364
Query: 214 DTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTF 273
D V++ ++G++L+ GHSS V + F+ DG ++ SAS D TVK+WN
Sbjct: 365 DKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN----RNGQLL 419
Query: 274 KSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLS--SGKREGGDFLCC 331
++L +V + P + + + TV + N GQ++++L+ S G F
Sbjct: 420 QTLTGHSSSVWGVAFSPDD-QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAF--- 475
Query: 332 TTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTL 367
SP G+ I +D + ++ + + L++TL
Sbjct: 476 --SPDGQTIASASDD-----KTVKLWNRNGQLLQTL 504
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 78/269 (28%), Positives = 130/269 (48%), Gaps = 29/269 (10%)
Query: 101 SHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR 160
S V FSPDGQ + + S D +++WN G++ + L + +V +A+S
Sbjct: 17 SSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHS--------SSVWGVAFSP 67
Query: 161 DSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIH 220
D + +AS S VK+W GQ L+ L HS V + FS D I +AS D V++
Sbjct: 68 DGQTIASASDDKTVKLWN-RNGQLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLW 125
Query: 221 GLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASD 280
++G++L+ GHSS V + F+ DG ++ SAS D TVK+WN ++L
Sbjct: 126 N-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN----RNGQLLQTLTGHS 180
Query: 281 IAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLS--SGKREGGDFLCCTTSPRGE 338
+V + P + + + TV + N GQ++++L+ S G F SP G+
Sbjct: 181 SSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAF-----SPDGQ 234
Query: 339 WIYCVGEDMVLVVRLIQQYLKESNLMKTL 367
I +D + ++ + + L++TL
Sbjct: 235 TIASASDD-----KTVKLWNRNGQLLQTL 258
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 131/276 (47%), Gaps = 29/276 (10%)
Query: 94 QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAV 153
Q G S V FSPDGQ + + S D +++WN G++ + L + +V
Sbjct: 51 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHS--------SSV 101
Query: 154 MSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF 213
+A+S D + +AS S VK+W GQ L+ L HS V + FS D I +AS
Sbjct: 102 RGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT-GHSSSVWGVAFSPDGQTIASASD 159
Query: 214 DTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTF 273
D V++ ++G++L+ GHSS V + F+ DG ++ SAS D TVK+WN
Sbjct: 160 DKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN----RNGQLL 214
Query: 274 KSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLS--SGKREGGDFLCC 331
++L +V + P + + + TV + N GQ++++L+ S G F
Sbjct: 215 QTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFR-- 271
Query: 332 TTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTL 367
P G+ I +D + ++ + + L++TL
Sbjct: 272 ---PDGQTIASASDD-----KTVKLWNRNGQLLQTL 299
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 90/170 (52%), Gaps = 12/170 (7%)
Query: 94 QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAV 153
Q G S V FSPDGQ + + S D +++WN G++ + L + +V
Sbjct: 379 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHS--------SSV 429
Query: 154 MSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF 213
+A+S D + +AS S VK+W GQ L+ L HS V + FS D I +AS
Sbjct: 430 WGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLT-GHSSSVRGVAFSPDGQTIASASD 487
Query: 214 DTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWN 263
D V++ ++G++L+ GHSS V + F+ DG ++ SAS D TVK+WN
Sbjct: 488 DKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 536
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 90/170 (52%), Gaps = 12/170 (7%)
Query: 94 QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAV 153
Q G S V FSPD Q + + S D +++WN G++ + L + +V
Sbjct: 420 QTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHS--------SSV 470
Query: 154 MSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF 213
+A+S D + +AS S VK+W GQ L+ L HS V + FS D I +AS
Sbjct: 471 RGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT-GHSSSVRGVAFSPDGQTIASASD 528
Query: 214 DTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWN 263
D V++ ++G++L+ GHSS V + F+ DG ++ SASSD TVK+WN
Sbjct: 529 DKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 17/144 (11%)
Query: 226 KMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNS 285
K HSS V + F+ DG ++ SAS D TVK+WN ++L +V
Sbjct: 7 KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVWG 62
Query: 286 IHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLS--SGKREGGDFLCCTTSPRGEWIYCV 343
+ P + + + TV + N GQ++++L+ S G F SP G+ I
Sbjct: 63 VAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAF-----SPDGQTIASA 116
Query: 344 GEDMVLVVRLIQQYLKESNLMKTL 367
+D + ++ + + L++TL
Sbjct: 117 SDD-----KTVKLWNRNGQLLQTL 135
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 104/208 (50%), Gaps = 19/208 (9%)
Query: 98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLA 157
G + V S +G + ++ S D + +WN G Q Q F+ + V+S+A
Sbjct: 65 GHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNG--------QCQYKFLGHTKDVLSVA 116
Query: 158 YSRDSEMLASGSQSGKVKIWKIATGQCLRKLEK-AHSLGVTCIQFSR--DNSQILTASFD 214
+S D+ + SG + +++W + G+C+ L + AH+ V+C++FS D I++ +D
Sbjct: 117 FSPDNRQIVSGGRDNALRVWNV-KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWD 175
Query: 215 TYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFK 274
V++ L +G+++ + +GH+++V +T + DG S+ DG ++W+L E S
Sbjct: 176 NLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEM- 234
Query: 275 SLGASDIAVNSIHLLPKNTEHFVVCNKT 302
A+ +N I P + +C T
Sbjct: 235 ---AAGAPINQICFSPN---RYWMCAAT 256
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 82/171 (47%), Gaps = 20/171 (11%)
Query: 103 VECARFSP--DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR 160
V C RFSP D +++G D ++VW+ TG++ DLK N+ V S+ S
Sbjct: 155 VSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLK--GHTNY------VTSVTVSP 206
Query: 161 DSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIH 220
D + AS + G ++W + G+ L ++ + C +R + A+ + +RI
Sbjct: 207 DGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPNR---YWMCAATEKGIRIF 263
Query: 221 GLKSGKML----KEFRGHSSFVND---ITFTADGHSVLSASSDGTVKMWNL 264
L++ ++ E +G V + I ++ADG ++ S +D +++W +
Sbjct: 264 DLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGV 314
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 11/206 (5%)
Query: 150 EEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQIL 209
E A ++ SRD +L+ G + + + G R+LE HS V+ + S + + +
Sbjct: 26 ETATKVVSTSRDKTLLSWGPNPDRHSS-ECSYGLPDRRLE-GHSAFVSDVALSNNGNFAV 83
Query: 210 TASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTEC 269
+AS+D +R+ L++G+ +F GH+ V + F+ D ++S D +++WN+K EC
Sbjct: 84 SASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK-GEC 142
Query: 270 TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK-TNTVVIMNMQ-GQIVRSLSSGKREGGD 327
T S GA V+ + P +V N V + ++ G++V L K
Sbjct: 143 MHTL-SRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDL---KGHTNY 198
Query: 328 FLCCTTSPRGEWIYCVGEDMVLVVRL 353
T SP G C D V RL
Sbjct: 199 VTSVTVSPDGS--LCASSDKDGVARL 222
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 96/214 (44%), Gaps = 18/214 (8%)
Query: 81 DQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKY 140
D K P L+ S ++ FSPDG++L TG+ D I +W+ KI L+
Sbjct: 104 DSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQG 163
Query: 141 QAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQ 200
QD + SL Y + L SGS V+IW + TGQC L + GVT +
Sbjct: 164 HEQD--------IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC--SLTLSIEDGVTTVA 213
Query: 201 FSR-DNSQILTASFDTYVRIHGLKSGKMLKEF-------RGHSSFVNDITFTADGHSVLS 252
S D I S D VR+ ++G +++ GH V + FT DG SV+S
Sbjct: 214 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 273
Query: 253 ASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSI 286
S D +VK+WNL+ S K+ + V I
Sbjct: 274 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 307
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 96/226 (42%), Gaps = 39/226 (17%)
Query: 101 SHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR 160
S V C +FS DG+YL TG + +V+ + G + L + A ++
Sbjct: 65 SVVCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDS--------------AANK 109
Query: 161 DSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIH 220
D E L + S + L + + FS D + T + D +RI
Sbjct: 110 DPENLNTSSS-------------------PSSDLYIRSVCFSPDGKFLATGAEDRLIRIW 150
Query: 221 GLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASD 280
+++ K++ +GH + + + G ++S S D TV++W+L+T +C+ T + +
Sbjct: 151 DIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL----SIE 206
Query: 281 IAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSGKREG 325
V ++ + P + ++ + V + + + G +V L S G
Sbjct: 207 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESG 252
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 83/182 (45%), Gaps = 21/182 (11%)
Query: 103 VECARFSP-DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRD 161
V SP DG+Y+ GS+D + VW+ TG + + L + + +++V S+ ++RD
Sbjct: 209 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESG-TGHKDSVYSVVFTRD 267
Query: 162 SEMLASGSQSGKVKIWKI--ATGQCLRKLEKAHSLGVTCI---------QFSRDNSQILT 210
+ + SGS VK+W + A + K + + VT I ++++ IL+
Sbjct: 268 GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILS 327
Query: 211 ASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSV-------LSASSDGTVKMWN 263
S D V KSG L +GH + V + A+G S+ + S D ++W
Sbjct: 328 GSKDRGVLFWDKKSGNPLLMLQGHRNSVISVA-VANGSSLGPEYNVFATGSGDCKARIWK 386
Query: 264 LK 265
K
Sbjct: 387 YK 388
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/100 (21%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
Query: 80 KDQEEEKYPTQLSKQIKF-GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDL 138
++ + K P + ++ + G K V + + +Y+++GS D + W+ +G L
Sbjct: 289 NNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL--L 346
Query: 139 KYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWK 178
Q N ++ + + + A+GS K +IWK
Sbjct: 347 MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 386
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 111/212 (52%), Gaps = 20/212 (9%)
Query: 108 FSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLAS 167
S DGQ+ ++GS DG + +W+ TTG + +D V+S+A+S D+ + S
Sbjct: 71 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD--------VLSVAFSSDNRQIVS 122
Query: 168 GSQSGKVKIWKIATGQCLRKL-EKAHSLGVTCIQFSRDNSQ--ILTASFDTYVRIHGLKS 224
GS+ +K+W G C + +++HS V+C++FS ++S I++ +D V++ L +
Sbjct: 123 GSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 181
Query: 225 GKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVN 284
K+ GH+ ++N +T + DG S DG +W+L + +L DI +N
Sbjct: 182 CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK---HLYTLDGGDI-IN 237
Query: 285 SIHLLPKNTEHFVVCNKTN-TVVIMNMQGQIV 315
++ P + +C T ++ I +++G+I+
Sbjct: 238 ALCFSP---NRYWLCAATGPSIKIWDLEGKII 266
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 7/153 (4%)
Query: 163 EMLASGSQSGKVKIWKIATGQC----LRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVR 218
+M+ S S+ + +WK+ + ++ + HS V+ + S D L+ S+D +R
Sbjct: 29 DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 88
Query: 219 IHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGA 278
+ L +G + F GH+ V + F++D ++S S D T+K+WN C T +
Sbjct: 89 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV-CKYTVQDESH 147
Query: 279 SDIAVNSIHLLPKNTEHFVV-CNKTNTVVIMNM 310
S+ V+ + P ++ +V C V + N+
Sbjct: 148 SE-WVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 179
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/173 (20%), Positives = 73/173 (42%), Gaps = 22/173 (12%)
Query: 103 VECARFSPDGQ--YLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR 160
V C RFSP+ +++ D ++VWN K++ N + + ++ S
Sbjct: 151 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT--------NHIGHTGYLNTVTVSP 202
Query: 161 DSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIH 220
D + ASG + G+ +W + G+ L L+ + C +R L A+ ++I
Sbjct: 203 DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNR---YWLCAATGPSIKIW 259
Query: 221 GLKSGKMLKEFR---------GHSSFVNDITFTADGHSVLSASSDGTVKMWNL 264
L+ ++ E + + ++ADG ++ + +D V++W +
Sbjct: 260 DLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 312
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 8/109 (7%)
Query: 75 GKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKI 134
G+A + D E K+ L G + C FSP+ +Y + + I++W+ I
Sbjct: 214 GQAMLWDLNEGKHLYTLDG----GDIINALC--FSPN-RYWLCAATGPSIKIWDLEGKII 266
Query: 135 RKDLKYQAQDNFMLMEEA-VMSLAYSRDSEMLASGSQSGKVKIWKIATG 182
+LK + E SLA+S D + L +G V++W++ G
Sbjct: 267 VDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 315
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 111/212 (52%), Gaps = 20/212 (9%)
Query: 108 FSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLAS 167
S DGQ+ ++GS DG + +W+ TTG + +D V+S+A+S D+ + S
Sbjct: 94 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD--------VLSVAFSSDNRQIVS 145
Query: 168 GSQSGKVKIWKIATGQCLRKL-EKAHSLGVTCIQFSRDNSQ--ILTASFDTYVRIHGLKS 224
GS+ +K+W G C + +++HS V+C++FS ++S I++ +D V++ L +
Sbjct: 146 GSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 204
Query: 225 GKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVN 284
K+ GH+ ++N +T + DG S DG +W+L + +L DI +N
Sbjct: 205 CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK---HLYTLDGGDI-IN 260
Query: 285 SIHLLPKNTEHFVVCNKTN-TVVIMNMQGQIV 315
++ P + +C T ++ I +++G+I+
Sbjct: 261 ALCFSP---NRYWLCAATGPSIKIWDLEGKII 289
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 85/189 (44%), Gaps = 9/189 (4%)
Query: 163 EMLASGSQSGKVKIWKIATGQC----LRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVR 218
+M+ S S+ + +WK+ + ++ + HS V+ + S D L+ S+D +R
Sbjct: 52 DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 111
Query: 219 IHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGA 278
+ L +G + F GH+ V + F++D ++S S D T+K+WN C T +
Sbjct: 112 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV-CKYTVQDESH 170
Query: 279 SDIAVNSIHLLPKNTEHFVV-CNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRG 337
S+ V+ + P ++ +V C V + N+ +++ G G T SP G
Sbjct: 171 SE-WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT--GYLNTVTVSPDG 227
Query: 338 EWIYCVGED 346
G+D
Sbjct: 228 SLCASGGKD 236
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/173 (20%), Positives = 73/173 (42%), Gaps = 22/173 (12%)
Query: 103 VECARFSPDGQ--YLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR 160
V C RFSP+ +++ D ++VWN K++ N + + ++ S
Sbjct: 174 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT--------NHIGHTGYLNTVTVSP 225
Query: 161 DSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIH 220
D + ASG + G+ +W + G+ L L+ + C +R L A+ ++I
Sbjct: 226 DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNR---YWLCAATGPSIKIW 282
Query: 221 GLKSGKMLKEFR---------GHSSFVNDITFTADGHSVLSASSDGTVKMWNL 264
L+ ++ E + + ++ADG ++ + +D V++W +
Sbjct: 283 DLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 8/109 (7%)
Query: 75 GKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKI 134
G+A + D E K+ L G + C FSP+ +Y + + I++W+ I
Sbjct: 237 GQAMLWDLNEGKHLYTLDG----GDIINALC--FSPN-RYWLCAATGPSIKIWDLEGKII 289
Query: 135 RKDLKYQAQDNFMLMEEA-VMSLAYSRDSEMLASGSQSGKVKIWKIATG 182
+LK + E SLA+S D + L +G V++W++ G
Sbjct: 290 VDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 103/183 (56%), Gaps = 11/183 (6%)
Query: 93 KQIKFGSKSHVECAR--FSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLME 150
KQIK V+ FSPD QYL TG+ G + ++ +GK K+ + F+L
Sbjct: 113 KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK--KEYSLDTRGKFIL-- 168
Query: 151 EAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILT 210
S+AYS D + LASG+ G + I+ IATG+ L LE H++ + + FS D+ ++T
Sbjct: 169 ----SIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLE-GHAMPIRSLTFSPDSQLLVT 223
Query: 211 ASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECT 270
AS D Y++I+ ++ + GH+S+V ++ F D +S+SSD +VK+W++ T C
Sbjct: 224 ASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCV 283
Query: 271 STF 273
TF
Sbjct: 284 HTF 286
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 80/160 (50%), Gaps = 7/160 (4%)
Query: 115 LITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKV 174
++TGS+D ++VW + ++ DL++ + + + V+S+ S + AS S +
Sbjct: 51 VVTGSLDDLVKVWKWRDERL--DLQWSLEGHQL----GVVSVDISHTLPIAASSSLDAHI 104
Query: 175 KIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGH 234
++W + G+ ++ ++ A + + FS D+ + T + V I G++SGK
Sbjct: 105 RLWDLENGKQIKSID-AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTR 163
Query: 235 SSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFK 274
F+ I ++ DG + S + DG + ++++ T + T +
Sbjct: 164 GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLE 203
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 93/200 (46%), Gaps = 9/200 (4%)
Query: 75 GKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKI 134
G K +E P K G +S V F P +++ S D I+VW++ TG
Sbjct: 83 GPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF 142
Query: 135 RKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSL 194
+ LK ++V +++ ++LAS S +K+W +C+R + H
Sbjct: 143 ERTLKGHT--------DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH-GHDH 193
Query: 195 GVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSAS 254
V+ + + I++AS D +++ +++G +K F GH +V + DG + S S
Sbjct: 194 NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS 253
Query: 255 SDGTVKMWNLKTTECTSTFK 274
+D TV++W + T EC + +
Sbjct: 254 NDQTVRVWVVATKECKAELR 273
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 100/229 (43%), Gaps = 34/229 (14%)
Query: 98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLA 157
G +V P+G ++++ S D I++W TG K F E V +
Sbjct: 190 GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK--------TFTGHREWVRMVR 241
Query: 158 YSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQ---------- 207
++D ++AS S V++W +AT +C +L + H V CI ++ ++S
Sbjct: 242 PNQDGTLIASCSNDQTVRVWVVATKECKAEL-REHRHVVECISWAPESSYSSISEATGSE 300
Query: 208 ----------ILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDG 257
+L+ S D +++ + +G L GH ++V + F + G +LS + D
Sbjct: 301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK 360
Query: 258 TVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVV 306
T+++W+ K C K+L A + V S+ T +VV + V
Sbjct: 361 TLRVWDYKNKRC---MKTLNAHEHFVTSLDF--HKTAPYVVTGSVDQTV 404
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 93/217 (42%), Gaps = 20/217 (9%)
Query: 63 LLPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKF--GSKSHVECARFSPDGQYLITGSV 120
++P G I +A +D+ + + Q +K G + V R + DG + + S
Sbjct: 200 IMPNGDHI-----VSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN 254
Query: 121 DGFIEVWNFTTGKIRKDLK----------YQAQDNFMLMEEAVMSLAYS--RDSEMLASG 168
D + VW T + + +L+ + + ++ + EA S + L SG
Sbjct: 255 DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 314
Query: 169 SQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKML 228
S+ +K+W ++TG CL L H V + F IL+ + D +R+ K+ + +
Sbjct: 315 SRDKTIKMWDVSTGMCLMTL-VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM 373
Query: 229 KEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLK 265
K H FV + F V++ S D TVK+W +
Sbjct: 374 KTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 73/135 (54%), Gaps = 6/135 (4%)
Query: 191 AHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSV 250
H VT + F S +++AS D +++ ++G + +GH+ V DI+F G +
Sbjct: 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 165
Query: 251 LSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM 310
S S+D T+K+W+ + EC +++ D V+S+ ++P N +H V ++ T+ + +
Sbjct: 166 ASCSADMTIKLWDFQGFEC---IRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEV 221
Query: 311 Q-GQIVRSLSSGKRE 324
Q G V++ +G RE
Sbjct: 222 QTGYCVKTF-TGHRE 235
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 100/210 (47%), Gaps = 21/210 (10%)
Query: 98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLA 157
G VE S DGQ+ ++GS DG + +W+ G + +D V+S+A
Sbjct: 428 GHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKD--------VLSVA 479
Query: 158 YSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKA---HSLGVTCIQFSRDNSQ--ILTAS 212
+S D+ + S S+ +K+W G+C + + H V+C++FS + Q I++AS
Sbjct: 480 FSLDNRQIVSASRDRTIKLWN-TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSAS 538
Query: 213 FDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTST 272
+D V++ L + K+ GH+ +V+ + + DG S DG V +W+L +
Sbjct: 539 WDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK---K 595
Query: 273 FKSLGASDIAVNSIHLLPKNTEHFVVCNKT 302
SL A+ + IH L + + +C T
Sbjct: 596 LYSLEANSV----IHALCFSPNRYWLCAAT 621
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 86/188 (45%), Gaps = 32/188 (17%)
Query: 98 GSKSHVECARFSPDG--QYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMS 155
G + V C RFSP+ +++ S D ++VWN + K+R L V +
Sbjct: 515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTG--------YVST 566
Query: 156 LAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDT 215
+A S D + ASG + G V +W +A G+ L LE + C +R L A+ +
Sbjct: 567 VAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNR---YWLCAATEH 623
Query: 216 YVRIHGLKSGKMLKEFR-------------GHSS------FVNDITFTADGHSVLSASSD 256
++I L+S ++++ + G ++ + + ++ADG ++ S +D
Sbjct: 624 GIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTD 683
Query: 257 GTVKMWNL 264
G +++W +
Sbjct: 684 GVIRVWGI 691
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 90/198 (45%), Gaps = 11/198 (5%)
Query: 161 DSEMLASGSQSGKVKIWKI-----ATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDT 215
+++++ S S+ + +WK+ A G R+L HS V + S D L+ S+D
Sbjct: 394 NADIIVSASRDKSIILWKLTKDDKAYGVAQRRL-TGHSHFVEDVVLSSDGQFALSGSWDG 452
Query: 216 YVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKS 275
+R+ L +G + F GH+ V + F+ D ++SAS D T+K+WN EC T
Sbjct: 453 ELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN-TLGECKYTISE 511
Query: 276 LG-ASDIAVNSIHLLPKNTEHFVVCNKTN-TVVIMNMQGQIVRSLSSGKREGGDFLCCTT 333
G V+ + P + +V + TV + N+ +RS +G G
Sbjct: 512 GGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHT--GYVSTVAV 569
Query: 334 SPRGEWIYCVGEDMVLVV 351
SP G G+D V+++
Sbjct: 570 SPDGSLCASGGKDGVVLL 587
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 10/156 (6%)
Query: 182 GQCLRKLEKAHSLGVTCIQFSRDNSQIL-TASFDTYVRIHGLKS-----GKMLKEFRGHS 235
G L+ +AH+ VT I DN+ I+ +AS D + + L G + GHS
Sbjct: 371 GLVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHS 430
Query: 236 SFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEH 295
FV D+ ++DG LS S DG +++W+L T F +G + ++ L +
Sbjct: 431 HFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRF--VGHTKDVLSVAFSL--DNRQ 486
Query: 296 FVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCC 331
V ++ T+ + N G+ ++S G D++ C
Sbjct: 487 IVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSC 522
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 86/164 (52%), Gaps = 11/164 (6%)
Query: 106 ARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEML 165
A FS DGQ + + D ++V+ TG+ D+K E+ V+ A+S D +
Sbjct: 621 ACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAH--------EDEVLCCAFSSDDSYI 672
Query: 166 ASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQIL--TASFDTYVRIHGLK 223
A+ S KVKIW ATG+ + ++ HS V C F+ ++ +L T S D ++++ L
Sbjct: 673 ATCSADKKVKIWDSATGKLVHTYDE-HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731
Query: 224 SGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTT 267
+ GH++ VN F+ D + S S+DGT+++W++++
Sbjct: 732 QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA 775
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 117/261 (44%), Gaps = 29/261 (11%)
Query: 97 FGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQ-----AQDNFMLMEE 151
FG + V RFSPD + L + S DG + +W+ + RK + + ++D +E
Sbjct: 740 FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEV 799
Query: 152 AVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTA 211
V ++S D + + +++ KV ++ I T L ++ H + FS + + A
Sbjct: 800 IVKCCSWSADGDKIIVAAKN-KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIA 858
Query: 212 SFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTS 271
V + + S + + RGH S+V+ + F+ DG S L+AS D T+++W K
Sbjct: 859 LSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK----- 913
Query: 272 TFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFL-- 329
+ NS +L + + N+T + + N++G L +GK D+L
Sbjct: 914 ---------VCKNSAIVLKQEIDVVFQENETMVLAVDNIRG---LQLIAGKTGQIDYLPE 961
Query: 330 ----CCTTSPRGEWIYCVGED 346
CC SP E++ ED
Sbjct: 962 AQVSCCCLSPHLEYVAFGDED 982
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 89/195 (45%), Gaps = 23/195 (11%)
Query: 115 LITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKV 174
L++ S DG ++VWN TG+I +D F + V+S A S D+ +S S
Sbjct: 1058 LLSWSFDGTVKVWNVITGRIERD--------FTCHQGTVLSCAISSDATKFSSTSADKTA 1109
Query: 175 KIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFR-- 232
KIW L +L K H+ V C FS D + T + +RI + G++L
Sbjct: 1110 KIWSFDLLSPLHEL-KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPI 1168
Query: 233 -------GHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNS 285
H +V D+ F+ D +++SA G +K WN+ T + + TF + G + +
Sbjct: 1169 SVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNGTN---LKK 1223
Query: 286 IHLLPKNTEHFVVCN 300
IH+ P + V N
Sbjct: 1224 IHVSPDFRTYVTVDN 1238
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 103/213 (48%), Gaps = 18/213 (8%)
Query: 151 EAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILT 210
+AV +S+D + +AS ++++K TG+ L + KAH V C FS D+S I T
Sbjct: 616 DAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI-KAHEDEVLCCAFSSDDSYIAT 674
Query: 211 ASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSA--SSDGTVKMWNLKTTE 268
S D V+I +GK++ + HS VN FT + +L A S+D +K+W+L E
Sbjct: 675 CSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE 734
Query: 269 CTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKR----- 323
C +T G ++ +VN P + E C+ T+ + +++ R + KR
Sbjct: 735 CRNTM--FGHTN-SVNHCRFSPDD-ELLASCSADGTLRLWDVRSANERKSINVKRFFLSS 790
Query: 324 ----EGGDFL--CCTTSPRGEWIYCVGEDMVLV 350
E + + CC+ S G+ I ++ VL+
Sbjct: 791 EDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLL 823
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 77/167 (46%), Gaps = 11/167 (6%)
Query: 98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLA 157
G K V +F+ DG+ LI+ S D I+VWN+ TG + QA +E V
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY---VFLQAH------QETVKDFR 1051
Query: 158 YSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYV 217
+DS +L S S G VK+W + TG+ R H V S D ++ + S D
Sbjct: 1052 LLQDSRLL-SWSFDGTVKVWNVITGRIERDF-TCHQGTVLSCAISSDATKFSSTSADKTA 1109
Query: 218 RIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNL 264
+I L E +GH+ V F+ DG + + +G +++WN+
Sbjct: 1110 KIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNV 1156
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 82/171 (47%), Gaps = 11/171 (6%)
Query: 94 QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAV 153
QI + ++ V C SP +Y+ G DG I++ ++ + + ++AV
Sbjct: 955 QIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFS--------SGVGHKKAV 1006
Query: 154 MSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF 213
+ ++ D + L S S+ +++W TG + +AH V + +D S++L+ SF
Sbjct: 1007 RHIQFTADGKTLISSSEDSVIQVWNWQTGDYV--FLQAHQETVKDFRLLQD-SRLLSWSF 1063
Query: 214 DTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNL 264
D V++ + +G++ ++F H V ++D S S+D T K+W+
Sbjct: 1064 DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSF 1114
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 79/173 (45%), Gaps = 22/173 (12%)
Query: 98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKD----LKYQAQDNFMLMEEAV 153
G S V FSPDG +T S D I VW T K+ K+ LK + F E V
Sbjct: 880 GHLSWVHGVMFSPDGSSFLTASDDQTIRVWE--TKKVCKNSAIVLKQEIDVVFQENETMV 937
Query: 154 MSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF 213
+++ R +++A GK TGQ + L +A V+C S +
Sbjct: 938 LAVDNIRGLQLIA-----GK-------TGQ-IDYLPEAQ---VSCCCLSPHLEYVAFGDE 981
Query: 214 DTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKT 266
D ++I L + ++ GH V I FTADG +++S+S D +++WN +T
Sbjct: 982 DGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT 1034
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLK-YQAQDNFMLMEEAVMSL 156
G V C+ FS DG L TG +G I +WN + G++ ++ V +
Sbjct: 1125 GHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDV 1184
Query: 157 AYSRDSEMLASGSQSGKVKIWKIATG 182
+S DS+ L S G +K W +ATG
Sbjct: 1185 CFSPDSKTLVSA--GGYLKWWNVATG 1208
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Query: 186 RKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTA 245
R + + H+ V FS+D +I + D +++ ++G+ L + + H V F++
Sbjct: 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS 667
Query: 246 DGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTN 303
D + + S+D VK+W+ T + T+ VN H K + H ++ +N
Sbjct: 668 DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQ---VNCCHFTNK-SNHLLLATGSN 721
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 86/164 (52%), Gaps = 11/164 (6%)
Query: 106 ARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEML 165
A FS DGQ + + D ++V+ TG+ D+K E+ V+ A+S D +
Sbjct: 628 ACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAH--------EDEVLCCAFSSDDSYI 679
Query: 166 ASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQIL--TASFDTYVRIHGLK 223
A+ S KVKIW ATG+ + ++ HS V C F+ ++ +L T S D ++++ L
Sbjct: 680 ATCSADKKVKIWDSATGKLVHTYDE-HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 738
Query: 224 SGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTT 267
+ GH++ VN F+ D + S S+DGT+++W++++
Sbjct: 739 QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA 782
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 117/261 (44%), Gaps = 29/261 (11%)
Query: 97 FGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQ-----AQDNFMLMEE 151
FG + V RFSPD + L + S DG + +W+ + RK + + ++D +E
Sbjct: 747 FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEV 806
Query: 152 AVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTA 211
V ++S D + + +++ KV ++ I T L ++ H + FS + + A
Sbjct: 807 IVKCCSWSADGDKIIVAAKN-KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIA 865
Query: 212 SFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTS 271
V + + S + + RGH S+V+ + F+ DG S L+AS D T+++W K
Sbjct: 866 LSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK----- 920
Query: 272 TFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFL-- 329
+ NS +L + + N+T + + N++G L +GK D+L
Sbjct: 921 ---------VCKNSAIVLKQEIDVVFQENETMVLAVDNIRG---LQLIAGKTGQIDYLPE 968
Query: 330 ----CCTTSPRGEWIYCVGED 346
CC SP E++ ED
Sbjct: 969 AQVSCCCLSPHLEYVAFGDED 989
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 89/195 (45%), Gaps = 23/195 (11%)
Query: 115 LITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKV 174
L++ S DG ++VWN TG+I +D F + V+S A S D+ +S S
Sbjct: 1065 LLSWSFDGTVKVWNVITGRIERD--------FTCHQGTVLSCAISSDATKFSSTSADKTA 1116
Query: 175 KIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFR-- 232
KIW L +L K H+ V C FS D + T + +RI + G++L
Sbjct: 1117 KIWSFDLLSPLHEL-KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPI 1175
Query: 233 -------GHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNS 285
H +V D+ F+ D +++SA G +K WN+ T + + TF + G + +
Sbjct: 1176 SVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNGTN---LKK 1230
Query: 286 IHLLPKNTEHFVVCN 300
IH+ P + V N
Sbjct: 1231 IHVSPDFRTYVTVDN 1245
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 103/213 (48%), Gaps = 18/213 (8%)
Query: 151 EAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILT 210
+AV +S+D + +AS ++++K TG+ L + KAH V C FS D+S I T
Sbjct: 623 DAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI-KAHEDEVLCCAFSSDDSYIAT 681
Query: 211 ASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSA--SSDGTVKMWNLKTTE 268
S D V+I +GK++ + HS VN FT + +L A S+D +K+W+L E
Sbjct: 682 CSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE 741
Query: 269 CTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKR----- 323
C +T G ++ +VN P + E C+ T+ + +++ R + KR
Sbjct: 742 CRNTM--FGHTN-SVNHCRFSPDD-ELLASCSADGTLRLWDVRSANERKSINVKRFFLSS 797
Query: 324 ----EGGDFL--CCTTSPRGEWIYCVGEDMVLV 350
E + + CC+ S G+ I ++ VL+
Sbjct: 798 EDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLL 830
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 77/167 (46%), Gaps = 11/167 (6%)
Query: 98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLA 157
G K V +F+ DG+ LI+ S D I+VWN+ TG + QA +E V
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY---VFLQAH------QETVKDFR 1058
Query: 158 YSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYV 217
+DS +L S S G VK+W + TG+ R H V S D ++ + S D
Sbjct: 1059 LLQDSRLL-SWSFDGTVKVWNVITGRIERDF-TCHQGTVLSCAISSDATKFSSTSADKTA 1116
Query: 218 RIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNL 264
+I L E +GH+ V F+ DG + + +G +++WN+
Sbjct: 1117 KIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNV 1163
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 82/171 (47%), Gaps = 11/171 (6%)
Query: 94 QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAV 153
QI + ++ V C SP +Y+ G DG I++ ++ + + ++AV
Sbjct: 962 QIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFS--------SGVGHKKAV 1013
Query: 154 MSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF 213
+ ++ D + L S S+ +++W TG + +AH V + +D S++L+ SF
Sbjct: 1014 RHIQFTADGKTLISSSEDSVIQVWNWQTGDYV--FLQAHQETVKDFRLLQD-SRLLSWSF 1070
Query: 214 DTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNL 264
D V++ + +G++ ++F H V ++D S S+D T K+W+
Sbjct: 1071 DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSF 1121
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 79/173 (45%), Gaps = 22/173 (12%)
Query: 98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKD----LKYQAQDNFMLMEEAV 153
G S V FSPDG +T S D I VW T K+ K+ LK + F E V
Sbjct: 887 GHLSWVHGVMFSPDGSSFLTASDDQTIRVWE--TKKVCKNSAIVLKQEIDVVFQENETMV 944
Query: 154 MSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF 213
+++ R +++A GK TGQ + L +A V+C S +
Sbjct: 945 LAVDNIRGLQLIA-----GK-------TGQ-IDYLPEAQ---VSCCCLSPHLEYVAFGDE 988
Query: 214 DTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKT 266
D ++I L + ++ GH V I FTADG +++S+S D +++WN +T
Sbjct: 989 DGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT 1041
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLK-YQAQDNFMLMEEAVMSL 156
G V C+ FS DG L TG +G I +WN + G++ ++ V +
Sbjct: 1132 GHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDV 1191
Query: 157 AYSRDSEMLASGSQSGKVKIWKIATG 182
+S DS+ L S G +K W +ATG
Sbjct: 1192 CFSPDSKTLVSA--GGYLKWWNVATG 1215
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Query: 186 RKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTA 245
R + + H+ V FS+D +I + D +++ ++G+ L + + H V F++
Sbjct: 615 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS 674
Query: 246 DGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTN 303
D + + S+D VK+W+ T + T+ VN H K + H ++ +N
Sbjct: 675 DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQ---VNCCHFTNK-SNHLLLATGSN 728
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 91/181 (50%), Gaps = 11/181 (6%)
Query: 85 EKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQD 144
+K T LS+ + V A FS DGQ + + D ++V+ TG+ K L+ +A
Sbjct: 606 KKNITNLSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGE--KLLEIKAH- 662
Query: 145 NFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRD 204
E+ V+ A+S D +A+ S KVKIW TG+ + ++ HS V C F+
Sbjct: 663 -----EDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDE-HSEQVNCCHFTNS 716
Query: 205 NSQIL--TASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMW 262
+ +L T S D ++++ L + GH++ VN F+ D + S S+DGT+K+W
Sbjct: 717 SHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLW 776
Query: 263 N 263
+
Sbjct: 777 D 777
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 113/255 (44%), Gaps = 29/255 (11%)
Query: 97 FGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQA-----QDNFMLMEE 151
FG + V RFSPD + L + S DG +++W+ T+ RK + + +D ME
Sbjct: 746 FGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEV 805
Query: 152 AVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTA 211
V ++S D + +++ K+ ++ I T L ++ H + FS N + A
Sbjct: 806 IVKCCSWSADGARIMVAAKN-KIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVA 864
Query: 212 SFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTS 271
V + S + + RGH S+V+ + F+ DG S L++S D T+++W K
Sbjct: 865 LSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKK----- 919
Query: 272 TFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFL-- 329
+ NS +L + + V + N V+++ + L +G+ D+L
Sbjct: 920 ---------VCKNSAVMLKQEVD---VVFQENEVMVLAVDHIRRLQLINGRTGQIDYLTE 967
Query: 330 ----CCTTSPRGEWI 340
CC SP ++I
Sbjct: 968 AQVSCCCLSPHLQYI 982
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 106/229 (46%), Gaps = 24/229 (10%)
Query: 81 DQEEEKYPTQLSKQIKF-GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLK 139
D E + + QL K I G + V+ R + + L++ S DG ++VWN TG KD
Sbjct: 1030 DAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSR-LLSWSFDGTVKVWNIITGNKEKD-- 1086
Query: 140 YQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCI 199
F+ + V+S S D+ +S S KIW L +L + H+ V C
Sbjct: 1087 ------FVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHEL-RGHNGCVRCS 1139
Query: 200 QFSRDNSQILTASFDTYVRIHGLKSGKML--------KEFRGHSSFVNDITFTADGHSVL 251
FS D++ + T + +RI + +G++L + H +V D+ F+ DG ++
Sbjct: 1140 AFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLI 1199
Query: 252 SASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCN 300
SA G +K WN+ T E + TF + G + + IH+ P + V N
Sbjct: 1200 SAG--GYIKWWNVVTGESSQTFYTNGTN---LKKIHVSPDFKTYVTVDN 1243
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 66/125 (52%), Gaps = 3/125 (2%)
Query: 151 EAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILT 210
+AV +S D + +AS ++++K TG+ L ++ KAH V C FS D+ I T
Sbjct: 622 DAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEI-KAHEDEVLCCAFSTDDRFIAT 680
Query: 211 ASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSA--SSDGTVKMWNLKTTE 268
S D V+I +G+++ + HS VN FT H +L A SSD +K+W+L E
Sbjct: 681 CSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKE 740
Query: 269 CTSTF 273
C +T
Sbjct: 741 CRNTM 745
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 80/171 (46%), Gaps = 11/171 (6%)
Query: 94 QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAV 153
QI + +++ V C SP QY+ G +G IE+ +I + ++Q + + V
Sbjct: 961 QIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQS-RFQHK-------KTV 1012
Query: 154 MSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF 213
+ ++ D + L S S ++++W +C+ + H V + + NS++L+ SF
Sbjct: 1013 WHIQFTADEKTLISSSDDAEIQVWNWQLDKCI--FLRGHQETVKDFRLLK-NSRLLSWSF 1069
Query: 214 DTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNL 264
D V++ + +G K+F H V + D S S+D T K+W+
Sbjct: 1070 DGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSF 1120
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 74/175 (42%), Gaps = 11/175 (6%)
Query: 94 QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAV 153
Q +F K V +F+ D + LI+ S D I+VWN+ K +Q E V
Sbjct: 1003 QSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQ---------ETV 1053
Query: 154 MSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF 213
++S +L S S G VK+W I TG + H V S D ++ + S
Sbjct: 1054 KDFRLLKNSRLL-SWSFDGTVKVWNIITGNKEKDF-VCHQGTVLSCDISHDATKFSSTSA 1111
Query: 214 DTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTE 268
D +I L E RGH+ V F+ D + + +G +++WN+ E
Sbjct: 1112 DKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGE 1166
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 76/172 (44%), Gaps = 14/172 (8%)
Query: 98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLA 157
G S V FSPDG +T S D I +W T K+ K N +M + + +
Sbjct: 886 GHLSWVHGVMFSPDGSSFLTSSDDQTIRLWE--TKKVCK--------NSAVMLKQEVDVV 935
Query: 158 YSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYV 217
+ + M+ + ++++ TGQ + L +A V+C S I + +
Sbjct: 936 FQENEVMVLAVDHIRRLQLINGRTGQ-IDYLTEAQ---VSCCCLSPHLQYIAFGDENGAI 991
Query: 218 RIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTEC 269
I L + ++ + H V I FTAD +++S+S D +++WN + +C
Sbjct: 992 EILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKC 1043
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 92/187 (49%), Gaps = 19/187 (10%)
Query: 97 FGSKSHV--ECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVM 154
F SH+ +C + DG Y ++ S D + +W+ TG+ YQ F+ + VM
Sbjct: 61 FKGHSHIVQDCT-LTADGAYALSASWDKTLRLWDVATGET-----YQ---RFVGHKSDVM 111
Query: 155 SLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQF------SRDNSQI 208
S+ + + M+ SGS+ +K+W I GQCL L H+ V+ ++ D+ I
Sbjct: 112 SVDIDKKASMIISGSRDKTIKVWTI-KGQCLATL-LGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 209 LTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTE 268
++A D V+ L ++ +F GH+S +N +T + DG + SA DG + +WNL +
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229
Query: 269 CTSTFKS 275
T +
Sbjct: 230 AMYTLSA 236
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 223 KSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIA 282
K G ++ F+GHS V D T TADG LSAS D T+++W++ T E F + ++
Sbjct: 53 KFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMS 112
Query: 283 VNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSL 318
V+ + K + ++ T+ + ++GQ + +L
Sbjct: 113 VD----IDKKASMIISGSRDKTIKVWTIKGQCLATL 144
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/160 (20%), Positives = 71/160 (44%), Gaps = 19/160 (11%)
Query: 111 DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ 170
D +I+ D ++ WN ++Q + +F+ + +L S D ++AS +
Sbjct: 165 DSVTIISAGNDKMVKAWNLN--------QFQIEADFIGHNSNINTLTASPDGTLIASAGK 216
Query: 171 SGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLK- 229
G++ +W +A + + L V + FS N L A+ T +++ L ++
Sbjct: 217 DGEIMLWNLAAKKAMYTLSAQDE--VFSLAFSP-NRYWLAAATATGIKVFSLDPQYLVDD 273
Query: 230 ---EFRGHSSFVN----DITFTADGHSVLSASSDGTVKMW 262
EF G+S + ++ADG ++ + +D +++W
Sbjct: 274 LRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 17/130 (13%)
Query: 97 FGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSL 156
G S++ SPDG + + DG I +WN K L Q + V SL
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ---------DEVFSL 243
Query: 157 AYSRDSEMLASGSQSGKVKIWKIATGQCLRKLE-------KAHSLGVTCIQFSRDNSQIL 209
A+S + LA+ + +G +K++ + + L KA + +S D +
Sbjct: 244 AFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLF 302
Query: 210 TASFDTYVRI 219
D +R+
Sbjct: 303 AGYTDNVIRV 312
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 7/115 (6%)
Query: 65 PPGTTIDLFRGKAAMKDQEEEKYPTQLSKQI-KFGSKSHVECARFSPDGQYLITGSVDGF 123
P GT I +A KD E + K + ++ V FSP+ +L + G
Sbjct: 206 PDGTLI-----ASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG- 259
Query: 124 IEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWK 178
I+V++ + DL+ + E +SLA+S D + L +G +++W+
Sbjct: 260 IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 92/187 (49%), Gaps = 19/187 (10%)
Query: 97 FGSKSHV--ECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVM 154
F SH+ +C + DG Y ++ S D + +W+ TG+ YQ F+ + VM
Sbjct: 61 FKGHSHIVQDCT-LTADGAYALSASWDKTLRLWDVATGET-----YQ---RFVGHKSDVM 111
Query: 155 SLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQF------SRDNSQI 208
S+ + + M+ SGS+ +K+W I GQCL L H+ V+ ++ D+ I
Sbjct: 112 SVDIDKKASMIISGSRDKTIKVWTI-KGQCLATL-LGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 209 LTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTE 268
++A D V+ L ++ +F GH+S +N +T + DG + SA DG + +WNL +
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229
Query: 269 CTSTFKS 275
T +
Sbjct: 230 AMYTLSA 236
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 223 KSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIA 282
K G ++ F+GHS V D T TADG LSAS D T+++W++ T E F + ++
Sbjct: 53 KFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMS 112
Query: 283 VNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSL 318
V+ + K + ++ T+ + ++GQ + +L
Sbjct: 113 VD----IDKKASMIISGSRDKTIKVWTIKGQCLATL 144
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 73/164 (44%), Gaps = 19/164 (11%)
Query: 111 DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ 170
D +I+ D ++ WN ++Q + +F+ + +L S D ++AS +
Sbjct: 165 DSVTIISAGNDKMVKAWNLN--------QFQIEADFIGHNSNINTLTASPDGTLIASAGK 216
Query: 171 SGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLK- 229
G++ +W +A + + L V + FS N L A+ T +++ L ++
Sbjct: 217 DGEIMLWNLAAKKAMYTLSAQDE--VFSLAFSP-NRYWLAAATATGIKVFSLDPQYLVDD 273
Query: 230 ---EFRGHSSFVN----DITFTADGHSVLSASSDGTVKMWNLKT 266
EF G+S + ++ADG ++ + +D +++W + T
Sbjct: 274 LRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 17/130 (13%)
Query: 97 FGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSL 156
G S++ SPDG + + DG I +WN K L Q + V SL
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ---------DEVFSL 243
Query: 157 AYSRDSEMLASGSQSGKVKIWKIATGQCLRKLE-------KAHSLGVTCIQFSRDNSQIL 209
A+S + LA+ + +G +K++ + + L KA + +S D +
Sbjct: 244 AFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLF 302
Query: 210 TASFDTYVRI 219
D +R+
Sbjct: 303 AGYTDNVIRV 312
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 7/120 (5%)
Query: 65 PPGTTIDLFRGKAAMKDQEEEKYPTQLSKQI-KFGSKSHVECARFSPDGQYLITGSVDGF 123
P GT I +A KD E + K + ++ V FSP+ +L + G
Sbjct: 206 PDGTLI-----ASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG- 259
Query: 124 IEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ 183
I+V++ + DL+ + E +SLA+S D + L +G +++W++ T
Sbjct: 260 IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 92/187 (49%), Gaps = 19/187 (10%)
Query: 97 FGSKSHV--ECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVM 154
F SH+ +C + DG Y ++ S D + +W+ TG+ YQ F+ + VM
Sbjct: 55 FKGHSHIVQDCT-LTADGAYALSASWDKTLRLWDVATGET-----YQ---RFVGHKSDVM 105
Query: 155 SLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQF------SRDNSQI 208
S+ + + M+ SGS+ +K+W I GQCL L H+ V+ ++ D+ I
Sbjct: 106 SVDIDKKASMIISGSRDKTIKVWTI-KGQCLATL-LGHNDWVSQVRVVPNEKADDDSVTI 163
Query: 209 LTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTE 268
++A D V+ L ++ +F GH+S +N +T + DG + SA DG + +WNL +
Sbjct: 164 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 223
Query: 269 CTSTFKS 275
T +
Sbjct: 224 AMYTLSA 230
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 223 KSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIA 282
K G ++ F+GHS V D T TADG LSAS D T+++W++ T E F + ++
Sbjct: 47 KFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMS 106
Query: 283 VNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSL 318
V+ + K + ++ T+ + ++GQ + +L
Sbjct: 107 VD----IDKKASMIISGSRDKTIKVWTIKGQCLATL 138
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 73/164 (44%), Gaps = 19/164 (11%)
Query: 111 DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ 170
D +I+ D ++ WN ++Q + +F+ + +L S D ++AS +
Sbjct: 159 DSVTIISAGNDKMVKAWNLN--------QFQIEADFIGHNSNINTLTASPDGTLIASAGK 210
Query: 171 SGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLK- 229
G++ +W +A + + L V + FS N L A+ T +++ L ++
Sbjct: 211 DGEIMLWNLAAKKAMYTLSAQDE--VFSLAFSP-NRYWLAAATATGIKVFSLDPQYLVDD 267
Query: 230 ---EFRGHSSFVN----DITFTADGHSVLSASSDGTVKMWNLKT 266
EF G+S + ++ADG ++ + +D +++W + T
Sbjct: 268 LRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 311
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 17/130 (13%)
Query: 97 FGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSL 156
G S++ SPDG + + DG I +WN K L Q + V SL
Sbjct: 187 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ---------DEVFSL 237
Query: 157 AYSRDSEMLASGSQSGKVKIWKIATGQCLRKLE-------KAHSLGVTCIQFSRDNSQIL 209
A+S + LA+ + +G +K++ + + L KA + +S D +
Sbjct: 238 AFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLF 296
Query: 210 TASFDTYVRI 219
D +R+
Sbjct: 297 AGYTDNVIRV 306
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 7/120 (5%)
Query: 65 PPGTTIDLFRGKAAMKDQEEEKYPTQLSKQI-KFGSKSHVECARFSPDGQYLITGSVDGF 123
P GT I +A KD E + K + ++ V FSP+ +L + G
Sbjct: 200 PDGTLI-----ASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG- 253
Query: 124 IEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ 183
I+V++ + DL+ + E +SLA+S D + L +G +++W++ T
Sbjct: 254 IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 313
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 92/187 (49%), Gaps = 19/187 (10%)
Query: 97 FGSKSHV--ECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVM 154
F SH+ +C + DG Y ++ S D + +W+ TG+ YQ F+ + VM
Sbjct: 61 FKGHSHIVQDCT-LTADGAYALSASWDKTLRLWDVATGE-----TYQ---RFVGHKSDVM 111
Query: 155 SLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQF------SRDNSQI 208
S+ + + M+ SGS+ +K+W I GQCL L H+ V+ ++ D+ I
Sbjct: 112 SVDIDKKASMIISGSRDKTIKVWTI-KGQCLATL-LGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 209 LTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTE 268
++A D V+ L ++ +F GH+S +N +T + DG + SA DG + +WNL +
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229
Query: 269 CTSTFKS 275
T +
Sbjct: 230 AMYTLSA 236
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 223 KSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIA 282
K G ++ F+GHS V D T TADG LSAS D T+++W++ T E F + ++
Sbjct: 53 KFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMS 112
Query: 283 VNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSL 318
V+ + K + ++ T+ + ++GQ + +L
Sbjct: 113 VD----IDKKASMIISGSRDKTIKVWTIKGQCLATL 144
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 74/164 (45%), Gaps = 19/164 (11%)
Query: 111 DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ 170
D +I+ D ++ WN ++Q + +F+ + +L S D ++AS +
Sbjct: 165 DSVTIISAGNDKMVKAWNLN--------QFQIEADFIGHNSNINTLTASPDGTLIASAGK 216
Query: 171 SGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLK- 229
G++ +W +A + + L V + FS N L A+ T +++ L ++
Sbjct: 217 DGEIMLWNLAAKKAMYTLSAQDE--VFSLAFSP-NRYWLAAATATGIKVFSLDPQYLVDD 273
Query: 230 ---EFRGHSSFVN----DITFTADGHSVLSASSDGTVKMWNLKT 266
EF G+S+ + ++ADG ++ + +D +++W + T
Sbjct: 274 LRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 7/120 (5%)
Query: 65 PPGTTIDLFRGKAAMKDQEEEKYPTQLSKQI-KFGSKSHVECARFSPDGQYLITGSVDGF 123
P GT I +A KD E + K + ++ V FSP+ +L + G
Sbjct: 206 PDGTLI-----ASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG- 259
Query: 124 IEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ 183
I+V++ + DL+ + E +SLA+S D + L +G +++W++ T
Sbjct: 260 IKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 92/187 (49%), Gaps = 19/187 (10%)
Query: 97 FGSKSHV--ECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVM 154
F SH+ +C + DG Y ++ S D + +W+ TG+ YQ F+ + VM
Sbjct: 61 FKGHSHIVQDCT-LTADGAYALSASWDKTLRLWDVATGET-----YQ---RFVGHKSDVM 111
Query: 155 SLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQF------SRDNSQI 208
S+ + + M+ SGS+ +K+W I GQCL L H+ V+ ++ D+ I
Sbjct: 112 SVDIDKKASMIISGSRDKTIKVWTI-KGQCLATL-LGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 209 LTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTE 268
++A D V+ L ++ +F GH+S +N +T + DG + SA DG + +WNL +
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229
Query: 269 CTSTFKS 275
T +
Sbjct: 230 AMYTLSA 236
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 223 KSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIA 282
K G ++ F+GHS V D T TADG LSAS D T+++W++ T E F + ++
Sbjct: 53 KFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMS 112
Query: 283 VNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSL 318
V+ + K + ++ T+ + ++GQ + +L
Sbjct: 113 VD----IDKKASMIISGSRDKTIKVWTIKGQCLATL 144
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 73/164 (44%), Gaps = 19/164 (11%)
Query: 111 DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ 170
D +I+ D ++ WN ++Q + +F+ + +L S D ++AS +
Sbjct: 165 DSVTIISAGNDKMVKAWNLN--------QFQIEADFIGHNSNINTLTASPDGTLIASAGK 216
Query: 171 SGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLK- 229
G++ +W +A + + L V + FS N L A+ T +++ L ++
Sbjct: 217 DGEIMLWNLAAKKAMYTLSAQDE--VFSLAFSP-NRYWLAAATATGIKVFSLDPQYLVDD 273
Query: 230 ---EFRGHSSFVN----DITFTADGHSVLSASSDGTVKMWNLKT 266
EF G+S + ++ADG ++ + +D +++W + T
Sbjct: 274 LRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 17/130 (13%)
Query: 97 FGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSL 156
G S++ SPDG + + DG I +WN K L Q + V SL
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ---------DEVFSL 243
Query: 157 AYSRDSEMLASGSQSGKVKIWKIATGQCLRKLE-------KAHSLGVTCIQFSRDNSQIL 209
A+S + LA+ + +G +K++ + + L KA + +S D +
Sbjct: 244 AFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLF 302
Query: 210 TASFDTYVRI 219
D +R+
Sbjct: 303 AGYTDNVIRV 312
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 7/120 (5%)
Query: 65 PPGTTIDLFRGKAAMKDQEEEKYPTQLSKQI-KFGSKSHVECARFSPDGQYLITGSVDGF 123
P GT I +A KD E + K + ++ V FSP+ +L + G
Sbjct: 206 PDGTLI-----ASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG- 259
Query: 124 IEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ 183
I+V++ + DL+ + E +SLA+S D + L +G +++W++ T
Sbjct: 260 IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 102/223 (45%), Gaps = 21/223 (9%)
Query: 97 FGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSL 156
+G S V C + +++GS D + VW+ TG Q M AV +
Sbjct: 196 YGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETG--------QCLHVLMGHVAAVRCV 245
Query: 157 AYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTY 216
Y D + SG+ VK+W T CL L+ H+ V +QF D +++ S DT
Sbjct: 246 QY--DGRRVVSGAYDFMVKVWDPETETCLHTLQ-GHTNRVYSLQF--DGIHVVSGSLDTS 300
Query: 217 VRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSL 276
+R+ +++G + GH S + + + ++S ++D TVK+W++KT +C T +
Sbjct: 301 IRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGP 358
Query: 277 GASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSL 318
AV + N + + TV + +++ G+ +R+L
Sbjct: 359 NKHQSAVTCLQF---NKNFVITSSDDGTVKLWDLKTGEFIRNL 398
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 90/184 (48%), Gaps = 18/184 (9%)
Query: 92 SKQIKFGSKSHV-ECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLME 150
S ++ G HV C +F G +++GS D ++VW+ TGK + L +
Sbjct: 110 SPKVLKGHDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTL---------VGH 158
Query: 151 EAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILT 210
+ + RD+ ++ SGS +K+W TG+C+ L H+ V C+ ++++
Sbjct: 159 TGGVWSSQMRDN-IIISGSTDRTLKVWNAETGECIHTL-YGHTSTVRCMHLH--EKRVVS 214
Query: 211 ASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECT 270
S D +R+ +++G+ L GH + V + + DG V+S + D VK+W+ +T C
Sbjct: 215 GSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCL 272
Query: 271 STFK 274
T +
Sbjct: 273 HTLQ 276
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 115 LITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKV 174
L++G+ D +++W+ TG+ + L+ + + AV L ++++ + + S G V
Sbjct: 332 LVSGNADSTVKIWDIKTGQCLQTLQGPNKH-----QSAVTCLQFNKN--FVITSSDDGTV 384
Query: 175 KIWKIATGQCLRKLEKAHSLG 195
K+W + TG+ +R L S G
Sbjct: 385 KLWDLKTGEFIRNLVTLESGG 405
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 90/187 (48%), Gaps = 19/187 (10%)
Query: 97 FGSKSHV--ECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVM 154
F SH+ +C + DG Y ++ S D + +W+ TG+ YQ F+ + V
Sbjct: 61 FKGHSHIVQDCT-LTADGAYALSASWDKTLRLWDVATGET-----YQ---RFVGHKSDVX 111
Query: 155 SLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQF------SRDNSQI 208
S+ + + + SGS+ +K+W I GQCL L H+ V+ ++ D+ I
Sbjct: 112 SVDIDKKASXIISGSRDKTIKVWTI-KGQCLATL-LGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 209 LTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTE 268
++A D V+ L ++ +F GH+S +N +T + DG + SA DG + +WNL +
Sbjct: 170 ISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKK 229
Query: 269 CTSTFKS 275
T +
Sbjct: 230 AXYTLSA 236
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 223 KSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIA 282
K G ++ F+GHS V D T TADG LSAS D T+++W++ T E F + +
Sbjct: 53 KFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXS 112
Query: 283 VNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSL 318
V+ + K + ++ T+ + ++GQ + +L
Sbjct: 113 VD----IDKKASXIISGSRDKTIKVWTIKGQCLATL 144
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 92/208 (44%), Gaps = 24/208 (11%)
Query: 153 VMSLAYSR-DSEMLASGSQSGKVKIWKIAT-----GQCLRKLEKAHSLGVTCIQFSRDNS 206
V SLA S +L S S+ + WK+ G +R K HS V + D +
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF-KGHSHIVQDCTLTADGA 78
Query: 207 QILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKT 266
L+AS+D +R+ + +G+ + F GH S V + ++S S D T+K+W +K
Sbjct: 79 YALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIK- 137
Query: 267 TECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKRE-G 325
+C +T LG +D V+ + ++P + + +I + V++ + + +
Sbjct: 138 GQCLATL--LGHNDW-VSQVRVVPNEK-----ADDDSVTIISAGNDKXVKAWNLNQFQIE 189
Query: 326 GDFL-------CCTTSPRGEWIYCVGED 346
DF+ T SP G I G+D
Sbjct: 190 ADFIGHNSNINTLTASPDGTLIASAGKD 217
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 72/164 (43%), Gaps = 19/164 (11%)
Query: 111 DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ 170
D +I+ D ++ WN ++Q + +F+ + +L S D ++AS +
Sbjct: 165 DSVTIISAGNDKXVKAWNLN--------QFQIEADFIGHNSNINTLTASPDGTLIASAGK 216
Query: 171 SGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLK- 229
G++ +W +A + L V + FS N L A+ T +++ L ++
Sbjct: 217 DGEIXLWNLAAKKAXYTLSAQDE--VFSLAFSP-NRYWLAAATATGIKVFSLDPQYLVDD 273
Query: 230 ---EFRGHSSFVN----DITFTADGHSVLSASSDGTVKMWNLKT 266
EF G+S + ++ADG ++ + +D +++W + T
Sbjct: 274 LRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVXT 317
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 17/130 (13%)
Query: 97 FGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSL 156
G S++ SPDG + + DG I +WN K L Q + V SL
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQ---------DEVFSL 243
Query: 157 AYSRDSEMLASGSQSGKVKIWKIATGQCLRKLE-------KAHSLGVTCIQFSRDNSQIL 209
A+S + LA+ + +G +K++ + + L KA + +S D +
Sbjct: 244 AFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLF 302
Query: 210 TASFDTYVRI 219
D +R+
Sbjct: 303 AGYTDNVIRV 312
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 7/120 (5%)
Query: 65 PPGTTIDLFRGKAAMKDQEEEKYPTQLSKQ-IKFGSKSHVECARFSPDGQYLITGSVDGF 123
P GT I +A KD E + K ++ V FSP+ +L + G
Sbjct: 206 PDGTLI-----ASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPNRYWLAAATATG- 259
Query: 124 IEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ 183
I+V++ + DL+ + E +SLA+S D + L +G +++W++ T
Sbjct: 260 IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVXTAN 319
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 93/187 (49%), Gaps = 27/187 (14%)
Query: 88 PTQLS-KQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNF 146
PT ++ +++ G ++ V F D +Y+++ S D I+VWN +T + + L
Sbjct: 243 PTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGH----- 295
Query: 147 MLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNS 206
+ + L Y RD ++ SGS +++W I G CLR LE H V CI+F DN
Sbjct: 296 ---KRGIACLQY-RD-RLVVSGSSDNTIRLWDIECGACLRVLE-GHEELVRCIRF--DNK 347
Query: 207 QILTASFDTYVRIHGL--------KSGKM-LKEFRGHSSFVNDITFTADGHSVLSASSDG 257
+I++ ++D +++ L +G + L+ HS V + F D ++S+S D
Sbjct: 348 RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDD 405
Query: 258 TVKMWNL 264
T+ +W+
Sbjct: 406 TILIWDF 412
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 88/179 (49%), Gaps = 18/179 (10%)
Query: 93 KQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEA 152
K+I G V C ++ D + +ITGS D + VW+ TG++ L + EA
Sbjct: 166 KRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHC--------EA 215
Query: 153 VMSLAYSRDSEMLASGSQSGKVKIWKIA--TGQCLRKLEKAHSLGVTCIQFSRDNSQILT 210
V+ L + ++ M+ + S+ + +W +A T LR++ H V + F D+ I++
Sbjct: 216 VLHLRF--NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVS 271
Query: 211 ASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTEC 269
AS D +++ + + ++ GH + + + V+S SSD T+++W+++ C
Sbjct: 272 ASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGAC 328
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 83/174 (47%), Gaps = 20/174 (11%)
Query: 103 VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDS 162
V C ++ D Q +++G D I++W+ T + ++ L +V+ L Y D
Sbjct: 136 VYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTG--------SVLCLQY--DE 183
Query: 163 EMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGL 222
++ +GS V++W + TG+ L L H V ++F +N ++T S D + + +
Sbjct: 184 RVIITGSSDSTVRVWDVNTGEMLNTLIH-HCEAVLHLRF--NNGMMVTCSKDRSIAVWDM 240
Query: 223 KSGKMLKEFR---GHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTF 273
S + R GH + VN + F D ++SAS D T+K+WN T E T
Sbjct: 241 ASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTL 292
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 84/161 (52%), Gaps = 11/161 (6%)
Query: 107 RFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAY-SRDSEML 165
R++PDG++L +G D + VW G + + F + AV ++A+ S +L
Sbjct: 248 RWAPDGRHLASGGNDNLVNVWPSAPG----EGGWVPLQTFTQHQGAVKAVAWCPWQSNVL 303
Query: 166 ASGSQSGK--VKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLK 223
A+G + ++IW + +G CL ++ AHS V I +S ++++ ++ K
Sbjct: 304 ATGGGTSDRHIRIWNVCSGACLSAVD-AHSQ-VCSILWSPHYKELISGHGFAQNQLVIWK 361
Query: 224 SGKMLK--EFRGHSSFVNDITFTADGHSVLSASSDGTVKMW 262
M K E +GH+S V +T + DG +V SA++D T+++W
Sbjct: 362 YPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 84/161 (52%), Gaps = 11/161 (6%)
Query: 107 RFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAY-SRDSEML 165
R++PDG++L +G D + VW G + + F + AV ++A+ S +L
Sbjct: 237 RWAPDGRHLASGGNDNLVNVWPSAPG----EGGWVPLQTFTQHQGAVKAVAWCPWQSNVL 292
Query: 166 ASGSQSG--KVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLK 223
A+G + ++IW + +G CL ++ AHS V I +S ++++ ++ K
Sbjct: 293 ATGGGTSDRHIRIWNVCSGACLSAVD-AHSQ-VCSILWSPHYKELISGHGFAQNQLVIWK 350
Query: 224 SGKMLK--EFRGHSSFVNDITFTADGHSVLSASSDGTVKMW 262
M K E +GH+S V +T + DG +V SA++D T+++W
Sbjct: 351 YPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 84/161 (52%), Gaps = 11/161 (6%)
Query: 107 RFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAY-SRDSEML 165
R++PDG++L +G D + VW G + + F + AV ++A+ S +L
Sbjct: 157 RWAPDGRHLASGGNDNLVNVWPSAPG----EGGWVPLQTFTQHQGAVKAVAWCPWQSNVL 212
Query: 166 ASGSQSG--KVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLK 223
A+G + ++IW + +G CL ++ AHS V I +S ++++ ++ K
Sbjct: 213 ATGGGTSDRHIRIWNVCSGACLSAVD-AHSQ-VCSILWSPHYKELISGHGFAQNQLVIWK 270
Query: 224 SGKMLK--EFRGHSSFVNDITFTADGHSVLSASSDGTVKMW 262
M K E +GH+S V +T + DG +V SA++D T+++W
Sbjct: 271 YPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 96/215 (44%), Gaps = 21/215 (9%)
Query: 66 PGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIE 125
P L+ G+ + + Y TQ+ + +++ V +F ++I GS D I
Sbjct: 26 PWVLTTLYSGRVELWN-----YETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80
Query: 126 VWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCL 185
V+N+ TG+ K + ++A ++ + S+A + SGS VK+W L
Sbjct: 81 VFNYNTGE--KVVDFEAHPDY------IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132
Query: 186 RKLEKAHSLGVTCIQFS-RDNSQILTASFDTYVRIHGLKSGKMLKEFR---GHSSFVNDI 241
+ + H V C+ F+ +D S + D V++ L G+ F G VN +
Sbjct: 133 EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYV 190
Query: 242 TFTA--DGHSVLSASSDGTVKMWNLKTTECTSTFK 274
+ D +++AS D T+K+W+ +T C +T +
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE 225
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 10/166 (6%)
Query: 110 PDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYS-RDSEMLASG 168
P Y+++GS D +++WN+ + + F E VM +A++ +D ASG
Sbjct: 107 PTKPYVLSGSDDLTVKLWNWEN-------NWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Query: 169 SQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSR--DNSQILTASFDTYVRIHGLKSGK 226
VK+W + L GV + + D ++TAS D ++I ++
Sbjct: 160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS 219
Query: 227 MLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTST 272
+ GH S V+ F ++S S DGT+K+WN T + T
Sbjct: 220 CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT 265
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/215 (19%), Positives = 89/215 (41%), Gaps = 4/215 (1%)
Query: 138 LKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVT 197
+K + F + V + + + + SG+V++W T +R ++ + V
Sbjct: 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTET-PVR 59
Query: 198 CIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDG 257
+F + I+ S D +R+ +G+ + +F H ++ I VLS S D
Sbjct: 60 AGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 258 TVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVR 316
TVK+WN + ++ + V + PK+ F TV + ++ Q
Sbjct: 120 TVKLWNWENNWALE--QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 317 SLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVV 351
+L++G+ G +++ P ++ +D+ + +
Sbjct: 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLK 139
G S+V A F P +I+GS DG +++WN +T K+ K L
Sbjct: 226 GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN 267
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 96/215 (44%), Gaps = 21/215 (9%)
Query: 66 PGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIE 125
P L+ G+ + + Y TQ+ + +++ V +F ++I GS D I
Sbjct: 26 PWVLTTLYSGRVELWN-----YETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80
Query: 126 VWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCL 185
V+N+ TG+ K + ++A ++ + S+A + SGS VK+W L
Sbjct: 81 VFNYNTGE--KVVDFEAHPDY------IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132
Query: 186 RKLEKAHSLGVTCIQFS-RDNSQILTASFDTYVRIHGLKSGKMLKEFR---GHSSFVNDI 241
+ + H V C+ F+ +D S + D V++ L G+ F G VN +
Sbjct: 133 EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYV 190
Query: 242 TFTA--DGHSVLSASSDGTVKMWNLKTTECTSTFK 274
+ D +++AS D T+K+W+ +T C +T +
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE 225
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 10/166 (6%)
Query: 110 PDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYS-RDSEMLASG 168
P Y+++GS D +++WN+ + + F E VM +A++ +D ASG
Sbjct: 107 PTKPYVLSGSDDLTVKLWNWEN-------NWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Query: 169 SQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSR--DNSQILTASFDTYVRIHGLKSGK 226
VK+W + L GV + + D ++TAS D ++I ++
Sbjct: 160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS 219
Query: 227 MLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTST 272
+ GH S V+ F ++S S DGT+K+WN T + T
Sbjct: 220 CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT 265
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/215 (19%), Positives = 89/215 (41%), Gaps = 4/215 (1%)
Query: 138 LKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVT 197
+K + F + V + + + + SG+V++W T +R ++ + V
Sbjct: 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTET-PVR 59
Query: 198 CIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDG 257
+F + I+ S D +R+ +G+ + +F H ++ I VLS S D
Sbjct: 60 AGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 258 TVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVR 316
TVK+WN + ++ + V + PK+ F TV + ++ Q
Sbjct: 120 TVKLWNWENNWALE--QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 317 SLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVV 351
+L++G+ G +++ P ++ +D+ + +
Sbjct: 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLK 139
G S+V A F P +I+GS DG +++WN +T K+ K L
Sbjct: 226 GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN 267
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 87/185 (47%), Gaps = 9/185 (4%)
Query: 89 TQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFML 148
+Q + IK +ECA F+P+GQ + G +D ++N ++ + +D
Sbjct: 98 SQKTHAIKLHCPWVMECA-FAPNGQSVACGGLDSACSIFNLSS-QADRDGNMPVSRVLTG 155
Query: 149 MEEAVMSLAYSRDSEM-LASGSQSGKVKIWKIATGQCLR----KLEKAHSLGVTCIQFSR 203
+ S Y D E L +GS +W + TGQ + + H+ V + +
Sbjct: 156 HKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS 215
Query: 204 DNSQI-LTASFDTYVRIHGLK-SGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKM 261
N+ + ++ S DT VR+ L+ + + ++ + GH +N + F DG + S DGT ++
Sbjct: 216 LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRL 275
Query: 262 WNLKT 266
++++T
Sbjct: 276 FDMRT 280
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 13/144 (9%)
Query: 98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLA 157
G + + +F PDGQ TGS DG +++ TG + + N + V S+A
Sbjct: 247 GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELP-IVTSVA 305
Query: 158 YSRDSEMLASGSQSGKVKIWKIATGQC---LRKLEKAHSLGVTCIQFSRDNSQILTASFD 214
+S +L +G +G +W + L L+ +H ++C+ S D S + T S+D
Sbjct: 306 FSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWD 365
Query: 215 TYVRIHGLKSGKMLKEFRGHSSFV 238
++I F GH V
Sbjct: 366 KNLKIWA---------FSGHRKIV 380
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 72/175 (41%), Gaps = 12/175 (6%)
Query: 98 GSKSHVECARFSPDGQY-LITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSL 156
G K + ++ PD + LITGS D +W+ TTG+ + V+SL
Sbjct: 155 GHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHT---ADVLSL 211
Query: 157 AY-SRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDT 215
+ S ++ M SGS V++W + + H + ++F D + T S D
Sbjct: 212 SINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDG 271
Query: 216 YVRIHGLKSGKMLKEFRGHSS-------FVNDITFTADGHSVLSASSDGTVKMWN 263
R+ +++G L+ + V + F+ G + + S+G +W+
Sbjct: 272 TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWD 326
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 75/182 (41%), Gaps = 23/182 (12%)
Query: 153 VMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTC-----IQFSRDNSQ 207
V SL ++ + + S SQ G++ +W T Q K H++ + C F+ +
Sbjct: 69 VYSLDWTPEKNWIVSASQDGRLIVWNALTSQ------KTHAIKLHCPWVMECAFAPNGQS 122
Query: 208 ILTASFDTYVRIHGLKS-----GKM--LKEFRGHSSFVNDITFTADGHS-VLSASSDGTV 259
+ D+ I L S G M + GH + + + D + +++ S D T
Sbjct: 123 VACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTC 182
Query: 260 KMWNLKTTECTSTFKSLGAS----DIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIV 315
+W++ T + S F S S D+ SI+ L N C+ T + + + + V
Sbjct: 183 VLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAV 242
Query: 316 RS 317
R+
Sbjct: 243 RT 244
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 229 KEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFK 274
+ +GHS V + +T + + ++SAS DG + +WN T++ T K
Sbjct: 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIK 105
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 6/119 (5%)
Query: 152 AVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ------CLRKLEKAHSLGVTCIQFSRDN 205
A S + DS +L SGS+ V IWK+ + K H+ V+ + S++N
Sbjct: 29 AGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN 88
Query: 206 SQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNL 264
+++S+D +R+ L++G K F GH S V + F+ D +LSA ++ +K+WN+
Sbjct: 89 CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 73/162 (45%), Gaps = 20/162 (12%)
Query: 114 YLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGK 173
+ I+ S D + +W+ TG K F+ + V S+A+S D+ + S +
Sbjct: 90 FAISSSWDKTLRLWDLRTGTTYK--------RFVGHQSEVYSVAFSPDNRQILSAGAERE 141
Query: 174 VKIWKIATGQC-LRKLEKA-HSLGVTCIQF-----SRDNSQILTASFDTYVRIHGLK--- 223
+K+W I G+C EK HS V+C+++ S + Q F + LK
Sbjct: 142 IKLWNI-LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN 200
Query: 224 -SGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNL 264
+ ++ F+ H S VN ++ + +G + + D + +W++
Sbjct: 201 TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 18/159 (11%)
Query: 186 RKLEKAHSLGVTCI--QFSR----DNSQILTASFDTYVRIHGLKS-------GKMLKEFR 232
R + + HS VT I FS+ D+ +++ S D V I L G K
Sbjct: 14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT 73
Query: 233 GHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKN 292
GH+ FV+D+ + + +S+S D T+++W+L+T +T+K V S+ P N
Sbjct: 74 GHNHFVSDLALSQENCFAISSSWDKTLRLWDLRT---GTTYKRFVGHQSEVYSVAFSPDN 130
Query: 293 TEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCC 331
+ + + + N+ G+ S S+ K D++ C
Sbjct: 131 RQ-ILSAGAEREIKLWNILGECKFS-SAEKENHSDWVSC 167
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 75/177 (42%), Gaps = 15/177 (8%)
Query: 98 GSKSHVECARFSPDGQYLITGSVDGFIEVWN------FTTGKIRKDLKYQAQDNFM-LME 150
G +S V FSPD + +++ + I++WN F++ + + + + +M+
Sbjct: 116 GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMK 175
Query: 151 EAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILT 210
A + + AS G++K+W T +R KAH V + S + I T
Sbjct: 176 SANKVQPF---APYFASVGWDGRLKVWN--TNFQIRYTFKAHESNVNHLSISPNGKYIAT 230
Query: 211 ASFDTYVRIHG-LKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKT 266
D + I L +EF S+ +N I F V + +D VK++NL T
Sbjct: 231 GGKDKKLLIWDILNLTYPQREFDAGST-INQIAFNPKLQWV-AVGTDQGVKIFNLMT 285
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 96/215 (44%), Gaps = 21/215 (9%)
Query: 66 PGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIE 125
P L+ G+ + + Y TQ+ + +++ V +F ++I GS D I
Sbjct: 26 PWVLTTLYSGRVELWN-----YETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80
Query: 126 VWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCL 185
V+N+ TG+ K + ++A ++ + S+A + SGS VK+W L
Sbjct: 81 VFNYNTGE--KVVDFEAHPDY------IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132
Query: 186 RKLEKAHSLGVTCIQFS-RDNSQILTASFDTYVRIHGLKSGKMLKEFR---GHSSFVNDI 241
+ + H V C+ F+ +D S + D V++ L G+ F G VN +
Sbjct: 133 EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYV 190
Query: 242 TFTA--DGHSVLSASSDGTVKMWNLKTTECTSTFK 274
+ D +++AS D T+K+W+ +T C +T +
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE 225
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 10/176 (5%)
Query: 102 HVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYS-R 160
++ P Y+++GS D +++WN+ + + F E VM +A++ +
Sbjct: 99 YIRSIAVHPTKPYVLSGSDDLTVKLWNWEN-------NWALEQTFEGHEHFVMCVAFNPK 151
Query: 161 DSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSR--DNSQILTASFDTYVR 218
D ASG VK+W + L GV + + D ++TAS D ++
Sbjct: 152 DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211
Query: 219 IHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFK 274
I ++ + GH S V+ F ++S S DGT+K+WN T + T
Sbjct: 212 IWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN 267
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 79/182 (43%), Gaps = 4/182 (2%)
Query: 171 SGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKE 230
SG+V++W T +R ++ + V +F + I+ S D +R+ +G+ + +
Sbjct: 34 SGRVELWNYETQVEVRSIQVTET-PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD 92
Query: 231 FRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLP 290
F H ++ I VLS S D TVK+WN + ++ + V + P
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE--QTFEGHEHFVMCVAFNP 150
Query: 291 KNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVL 349
K+ F TV + ++ Q +L++G+ G +++ P ++ +D+ +
Sbjct: 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTI 210
Query: 350 VV 351
+
Sbjct: 211 KI 212
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLK 139
G S+V A F P +I+GS DG +++WN +T K+ K L
Sbjct: 226 GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN 267
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 96/215 (44%), Gaps = 21/215 (9%)
Query: 66 PGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIE 125
P L+ G+ + + Y TQ+ + +++ V +F ++I GS D I
Sbjct: 26 PWVLTTLYSGRVEIWN-----YETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80
Query: 126 VWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCL 185
V+N+ TG+ K + ++A ++ + S+A + SGS VK+W L
Sbjct: 81 VFNYNTGE--KVVDFEAHPDY------IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132
Query: 186 RKLEKAHSLGVTCIQFS-RDNSQILTASFDTYVRIHGLKSGKMLKEFR---GHSSFVNDI 241
+ + H V C+ F+ +D S + D V++ L G+ F G VN +
Sbjct: 133 EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYV 190
Query: 242 TFTA--DGHSVLSASSDGTVKMWNLKTTECTSTFK 274
+ D +++AS D T+K+W+ +T C +T +
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE 225
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 10/176 (5%)
Query: 102 HVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYS-R 160
++ P Y+++GS D +++WN+ + + F E VM +A++ +
Sbjct: 99 YIRSIAVHPTKPYVLSGSDDLTVKLWNWEN-------NWALEQTFEGHEHFVMCVAFNPK 151
Query: 161 DSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSR--DNSQILTASFDTYVR 218
D ASG VK+W + L GV + + D ++TAS D ++
Sbjct: 152 DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211
Query: 219 IHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFK 274
I ++ + GH S V+ F ++S S DGT+K+WN T + T
Sbjct: 212 IWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN 267
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 79/182 (43%), Gaps = 4/182 (2%)
Query: 171 SGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKE 230
SG+V+IW T +R ++ + V +F + I+ S D +R+ +G+ + +
Sbjct: 34 SGRVEIWNYETQVEVRSIQVTET-PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD 92
Query: 231 FRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLP 290
F H ++ I VLS S D TVK+WN + ++ + V + P
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE--QTFEGHEHFVMCVAFNP 150
Query: 291 KNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVL 349
K+ F TV + ++ Q +L++G+ G +++ P ++ +D+ +
Sbjct: 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTI 210
Query: 350 VV 351
+
Sbjct: 211 KI 212
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLK 139
G S+V A F P +I+GS DG +++WN +T K+ K L
Sbjct: 226 GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN 267
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Query: 168 GSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKM 227
G+ G +K+ + R++++AH +T ++F ++++S D ++I +K G
Sbjct: 112 GTTEGDIKVLD-SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN 170
Query: 228 LKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIH 287
+ GH + V DI G +VLSAS DGT+++W T TF VNSI
Sbjct: 171 PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIA 230
Query: 288 LL 289
L
Sbjct: 231 LF 232
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 81/210 (38%), Gaps = 43/210 (20%)
Query: 90 QLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLM 149
L ++I S + +F P G+ LI+ S D +++W+ G + L +
Sbjct: 126 NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL--------IGH 177
Query: 150 EEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKL---EKAHSLGVTCIQF----S 202
V +A + S S G +++W+ TG + E H GV I
Sbjct: 178 RATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHD-GVNSIALFVGTD 236
Query: 203 RDNSQILTA-----SFDTYVR--IHGLKSGKMLKEFRGHSSFVNDIT------------- 242
R +I T+ F TY + I G SG + H+ F + T
Sbjct: 237 RQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITV----HNVFSKEQTIQLPSKFTCSCNS 292
Query: 243 FTADGHS---VLSASSDGTVKMWNLKTTEC 269
T DG++ + + +G + W+L++ EC
Sbjct: 293 LTVDGNNANYIYAGYENGMLAQWDLRSPEC 322
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Query: 168 GSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKM 227
G+ G +K+ + R++++AH +T ++F ++++S D ++I +K G
Sbjct: 115 GTTEGDIKVLD-SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN 173
Query: 228 LKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIH 287
+ GH + V DI G +VLSAS DGT+++W T TF VNSI
Sbjct: 174 PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIA 233
Query: 288 LL 289
L
Sbjct: 234 LF 235
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 81/210 (38%), Gaps = 43/210 (20%)
Query: 90 QLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLM 149
L ++I S + +F P G+ LI+ S D +++W+ G + L +
Sbjct: 129 NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL--------IGH 180
Query: 150 EEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKL---EKAHSLGVTCIQF----S 202
V +A + S S G +++W+ TG + E H GV I
Sbjct: 181 RATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHD-GVNSIALFVGTD 239
Query: 203 RDNSQILTA-----SFDTYVR--IHGLKSGKMLKEFRGHSSFVNDIT------------- 242
R +I T+ F TY + I G SG + H+ F + T
Sbjct: 240 RQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITV----HNVFSKEQTIQLPSKFTCSCNS 295
Query: 243 FTADGHS---VLSASSDGTVKMWNLKTTEC 269
T DG++ + + +G + W+L++ EC
Sbjct: 296 LTVDGNNANYIYAGYENGMLAQWDLRSPEC 325
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Query: 108 FSPDGQYLITGSVDGFIEVWN-FTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLA 166
+ D + L++ S DG + +W+ +TT K+ L VM+ AY+ +A
Sbjct: 63 WGTDSRLLVSASQDGKLIIWDSYTTNKVHA---------IPLRSSWVMTCAYAPSGNYVA 113
Query: 167 SGSQSGKVKIWKIATGQCLRKLEK---AHSLGVTCIQFSRDNSQILTASFDTYVRIHGLK 223
G I+ + T + ++ + H+ ++C +F DN QI+T+S DT + ++
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIE 172
Query: 224 SGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAV 283
+G+ F GH+ V ++ D +S + D + K+W+++ C TF SDI
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG-HESDI-- 229
Query: 284 NSIHLLPKNTEHFVVCNKTNTVVIMNMQGQ 313
N+I P N F + T + +++
Sbjct: 230 NAICFFP-NGNAFATGSDDATCRLFDLRAD 258
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 77/186 (41%), Gaps = 11/186 (5%)
Query: 85 EKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTT--GKIRKDLKYQA 142
+ Y T I S + CA ++P G Y+ G +D ++N T G +R +
Sbjct: 83 DSYTTNKVHAIPLRSSWVMTCA-YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 141
Query: 143 QDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFS 202
++ S D + + S +W I TGQ H+ V + +
Sbjct: 142 HTGYL-------SCCRFLDDNQIVTSSGDTTCALWDIETGQ-QTTTFTGHTGDVMSLSLA 193
Query: 203 RDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMW 262
D ++ + D ++ ++ G + F GH S +N I F +G++ + S D T +++
Sbjct: 194 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253
Query: 263 NLKTTE 268
+L+ +
Sbjct: 254 DLRADQ 259
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 79/210 (37%), Gaps = 54/210 (25%)
Query: 98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLA 157
G ++ C RF D Q ++T S D +W+ TG+ D VMSL+
Sbjct: 141 GHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGD--------VMSLS 191
Query: 158 YSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYV 217
+ D+ + SG+ K+W + G C R+ H + I F + + T S D
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVREGMC-RQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 218 RIHGL------------------------KSGKML----KEFR----------------G 233
R+ L KSG++L +F G
Sbjct: 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 310
Query: 234 HSSFVNDITFTADGHSVLSASSDGTVKMWN 263
H + V+ + T DG +V + S D +K+WN
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Query: 108 FSPDGQYLITGSVDGFIEVWN-FTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLA 166
+ D + L++ S DG + +W+ +TT K+ L VM+ AY+ +A
Sbjct: 74 WGTDSRLLVSASQDGKLIIWDSYTTNKVHA---------IPLRSSWVMTCAYAPSGNYVA 124
Query: 167 SGSQSGKVKIWKIATGQCLRKLEK---AHSLGVTCIQFSRDNSQILTASFDTYVRIHGLK 223
G I+ + T + ++ + H+ ++C +F DN QI+T+S DT + ++
Sbjct: 125 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIE 183
Query: 224 SGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAV 283
+G+ F GH+ V ++ D +S + D + K+W+++ C TF SDI
Sbjct: 184 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG-HESDI-- 240
Query: 284 NSIHLLPKNTEHFVVCNKTNTVVIMNMQGQ 313
N+I P N F + T + +++
Sbjct: 241 NAICFFP-NGNAFATGSDDATCRLFDLRAD 269
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 77/186 (41%), Gaps = 11/186 (5%)
Query: 85 EKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTT--GKIRKDLKYQA 142
+ Y T I S + CA ++P G Y+ G +D ++N T G +R +
Sbjct: 94 DSYTTNKVHAIPLRSSWVMTCA-YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 152
Query: 143 QDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFS 202
++ S D + + S +W I TGQ H+ V + +
Sbjct: 153 HTGYL-------SCCRFLDDNQIVTSSGDTTCALWDIETGQ-QTTTFTGHTGDVMSLSLA 204
Query: 203 RDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMW 262
D ++ + D ++ ++ G + F GH S +N I F +G++ + S D T +++
Sbjct: 205 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 264
Query: 263 NLKTTE 268
+L+ +
Sbjct: 265 DLRADQ 270
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 79/210 (37%), Gaps = 54/210 (25%)
Query: 98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLA 157
G ++ C RF D Q ++T S D +W+ TG+ D VMSL+
Sbjct: 152 GHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGD--------VMSLS 202
Query: 158 YSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYV 217
+ D+ + SG+ K+W + G C R+ H + I F + + T S D
Sbjct: 203 LAPDTRLFVSGACDASAKLWDVREGMC-RQTFTGHESDINAICFFPNGNAFATGSDDATC 261
Query: 218 RIHGL------------------------KSGKML----KEFR----------------G 233
R+ L KSG++L +F G
Sbjct: 262 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 321
Query: 234 HSSFVNDITFTADGHSVLSASSDGTVKMWN 263
H + V+ + T DG +V + S D +K+WN
Sbjct: 322 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Query: 108 FSPDGQYLITGSVDGFIEVWN-FTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLA 166
+ D + L++ S DG + +W+ +TT K+ L VM+ AY+ +A
Sbjct: 63 WGTDSRLLVSASQDGKLIIWDSYTTNKVHA---------IPLRSSWVMTCAYAPSGNYVA 113
Query: 167 SGSQSGKVKIWKIATGQCLRKLEK---AHSLGVTCIQFSRDNSQILTASFDTYVRIHGLK 223
G I+ + T + ++ + H+ ++C +F DN QI+T+S DT + ++
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIE 172
Query: 224 SGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAV 283
+G+ F GH+ V ++ D +S + D + K+W+++ C TF SDI
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG-HESDI-- 229
Query: 284 NSIHLLPKNTEHFVVCNKTNTVVIMNMQGQ 313
N+I P N F + T + +++
Sbjct: 230 NAICFFP-NGNAFATGSDDATCRLFDLRAD 258
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 77/186 (41%), Gaps = 11/186 (5%)
Query: 85 EKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTT--GKIRKDLKYQA 142
+ Y T I S + CA ++P G Y+ G +D ++N T G +R +
Sbjct: 83 DSYTTNKVHAIPLRSSWVMTCA-YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 141
Query: 143 QDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFS 202
++ S D + + S +W I TGQ H+ V + +
Sbjct: 142 HTGYL-------SCCRFLDDNQIVTSSGDTTCALWDIETGQ-QTTTFTGHTGDVMSLSLA 193
Query: 203 RDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMW 262
D ++ + D ++ ++ G + F GH S +N I F +G++ + S D T +++
Sbjct: 194 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253
Query: 263 NLKTTE 268
+L+ +
Sbjct: 254 DLRADQ 259
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 79/210 (37%), Gaps = 54/210 (25%)
Query: 98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLA 157
G ++ C RF D Q ++T S D +W+ TG+ D VMSL+
Sbjct: 141 GHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGD--------VMSLS 191
Query: 158 YSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYV 217
+ D+ + SG+ K+W + G C R+ H + I F + + T S D
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVREGMC-RQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 218 RIHGL------------------------KSGKML----KEFR----------------G 233
R+ L KSG++L +F G
Sbjct: 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 310
Query: 234 HSSFVNDITFTADGHSVLSASSDGTVKMWN 263
H + V+ + T DG +V + S D +K+WN
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Query: 108 FSPDGQYLITGSVDGFIEVWN-FTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLA 166
+ D + L++ S DG + +W+ +TT K+ L VM+ AY+ +A
Sbjct: 63 WGTDSRLLLSASQDGKLIIWDSYTTNKVHA---------IPLRSSWVMTCAYAPSGNYVA 113
Query: 167 SGSQSGKVKIWKIATGQCLRKLEK---AHSLGVTCIQFSRDNSQILTASFDTYVRIHGLK 223
G I+ + T + ++ + H+ ++C +F DN QI+T+S DT + ++
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIE 172
Query: 224 SGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAV 283
+G+ F GH+ V ++ D +S + D + K+W+++ C TF SDI
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG-HESDI-- 229
Query: 284 NSIHLLPKNTEHFVVCNKTNTVVIMNMQGQ 313
N+I P N F + T + +++
Sbjct: 230 NAICFFP-NGNAFATGSDDATCRLFDLRAD 258
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 77/186 (41%), Gaps = 11/186 (5%)
Query: 85 EKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTT--GKIRKDLKYQA 142
+ Y T I S + CA ++P G Y+ G +D ++N T G +R +
Sbjct: 83 DSYTTNKVHAIPLRSSWVMTCA-YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 141
Query: 143 QDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFS 202
++ S D + + S +W I TGQ H+ V + +
Sbjct: 142 HTGYL-------SCCRFLDDNQIVTSSGDTTCALWDIETGQ-QTTTFTGHTGDVMSLSLA 193
Query: 203 RDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMW 262
D ++ + D ++ ++ G + F GH S +N I F +G++ + S D T +++
Sbjct: 194 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253
Query: 263 NLKTTE 268
+L+ +
Sbjct: 254 DLRADQ 259
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 79/210 (37%), Gaps = 54/210 (25%)
Query: 98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLA 157
G ++ C RF D Q ++T S D +W+ TG+ D VMSL+
Sbjct: 141 GHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGD--------VMSLS 191
Query: 158 YSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYV 217
+ D+ + SG+ K+W + G C R+ H + I F + + T S D
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVREGMC-RQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 218 RIHGL------------------------KSGKML----KEFR----------------G 233
R+ L KSG++L +F G
Sbjct: 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 310
Query: 234 HSSFVNDITFTADGHSVLSASSDGTVKMWN 263
H + V+ + T DG +V + S D +K+WN
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 16/71 (22%)
Query: 229 KEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHL 288
+ RGH + + + + D +LSAS DG + +W+ TT N +H
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT----------------NKVHA 92
Query: 289 LPKNTEHFVVC 299
+P + + C
Sbjct: 93 IPLRSSWVMTC 103
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Query: 108 FSPDGQYLITGSVDGFIEVWN-FTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLA 166
+ D + L++ S DG + +W+ +TT K+ L VM+ AY+ +A
Sbjct: 63 WGTDSRLLLSASQDGKLIIWDSYTTNKVHA---------IPLRSSWVMTCAYAPSGNYVA 113
Query: 167 SGSQSGKVKIWKIATGQCLRKLEK---AHSLGVTCIQFSRDNSQILTASFDTYVRIHGLK 223
G I+ + T + ++ + H+ ++C +F DN QI+T+S DT + ++
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIE 172
Query: 224 SGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAV 283
+G+ F GH+ V ++ D +S + D + K+W+++ C TF SDI
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG-HESDI-- 229
Query: 284 NSIHLLPKNTEHFVVCNKTNTVVIMNMQGQ 313
N+I P N F + T + +++
Sbjct: 230 NAICFFP-NGNAFATGSDDATCRLFDLRAD 258
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 77/186 (41%), Gaps = 11/186 (5%)
Query: 85 EKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTT--GKIRKDLKYQA 142
+ Y T I S + CA ++P G Y+ G +D ++N T G +R +
Sbjct: 83 DSYTTNKVHAIPLRSSWVMTCA-YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 141
Query: 143 QDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFS 202
++ S D + + S +W I TGQ H+ V + +
Sbjct: 142 HTGYL-------SCCRFLDDNQIVTSSGDTTCALWDIETGQ-QTTTFTGHTGDVMSLSLA 193
Query: 203 RDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMW 262
D ++ + D ++ ++ G + F GH S +N I F +G++ + S D T +++
Sbjct: 194 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253
Query: 263 NLKTTE 268
+L+ +
Sbjct: 254 DLRADQ 259
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 79/210 (37%), Gaps = 54/210 (25%)
Query: 98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLA 157
G ++ C RF D Q ++T S D +W+ TG+ D VMSL+
Sbjct: 141 GHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGD--------VMSLS 191
Query: 158 YSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYV 217
+ D+ + SG+ K+W + G C R+ H + I F + + T S D
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVREGMC-RQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 218 RIHGL------------------------KSGKML----KEFR----------------G 233
R+ L KSG++L +F G
Sbjct: 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 310
Query: 234 HSSFVNDITFTADGHSVLSASSDGTVKMWN 263
H + V+ + T DG +V + S D +K+WN
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 16/71 (22%)
Query: 229 KEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHL 288
+ RGH + + + + D +LSAS DG + +W+ TT N +H
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT----------------NKVHA 92
Query: 289 LPKNTEHFVVC 299
+P + + C
Sbjct: 93 IPLRSSWVMTC 103
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 87/200 (43%), Gaps = 14/200 (7%)
Query: 86 KYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDN 145
K+ + + KF V R++PDG + DG I ++N G + + N
Sbjct: 181 KFKSTFGEHTKF-----VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKN 235
Query: 146 FMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTC----IQF 201
+ +V L +S D +AS S +KIW +AT K+EK +G +
Sbjct: 236 -VAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT----LKVEKTIPVGTRIEDQQLGI 290
Query: 202 SRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKM 261
+++ S + ++ + G + + GH+ + ++ +ADG ++ SA ++G +
Sbjct: 291 IWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINS 350
Query: 262 WNLKTTECTSTFKSLGASDI 281
W++ T F + A+ I
Sbjct: 351 WDISTGISNRVFPDVHATMI 370
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 61/147 (41%), Gaps = 36/147 (24%)
Query: 108 FSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKY--QAQD--------------------- 144
+SPDG + + S D I++WN T K+ K + + +D
Sbjct: 247 WSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI 306
Query: 145 NFMLME------------EAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAH 192
NF+ E +A+ +L+ S D + L S G + W I+TG R H
Sbjct: 307 NFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVH 366
Query: 193 SLGVTCIQFSRDNSQILTASFDTYVRI 219
+ +T I+ + + T S+D ++++
Sbjct: 367 ATMITGIK-TTSKGDLFTVSWDDHLKV 392
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 71/163 (43%), Gaps = 12/163 (7%)
Query: 105 CARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEM 164
A+ SP G Y +G V G + +W+ T + + + V +++ +S+
Sbjct: 64 VAKTSPSGYYCASGDVHGNVRIWDTT------QTTHILKTTIPVFSGPVKDISWDSESKR 117
Query: 165 LASGSQSGKVK---IWKIATGQCLRKLE-KAHSLGVTCIQFSRDNSQILTASFDTYVRIH 220
+A+ + G+ + ++ TG L +A ++ + SR +I++ S D V I
Sbjct: 118 IAAVGE-GRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRP-FRIISGSDDNTVAIF 175
Query: 221 GLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWN 263
K F H+ FV+ + + DG S DGT+ ++N
Sbjct: 176 EGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYN 218
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 16/82 (19%)
Query: 103 VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEA-----VMSLA 157
V C +SPD L TGS+D + VWN + D+ ++++ A V S+
Sbjct: 539 VACVSWSPDNVRLATGSLDNSVIVWNMN----------KPSDHPIIIKGAHAMSSVNSVI 588
Query: 158 YSRDSEMLASGSQSGKVKIWKI 179
+ ++ ++++G Q +K W +
Sbjct: 589 WLNETTIVSAG-QDSNIKFWNV 609
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 74/166 (44%), Gaps = 8/166 (4%)
Query: 103 VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDS 162
+ CA ++P G + G +D V+ T K+ A+ + M +S +S
Sbjct: 110 MACA-YAPSGCAIACGGLDNKCSVYPLT---FDKNENMAAKKKSVAMHTNYLSACSFTNS 165
Query: 163 EM-LASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQF--SRDNSQILTASFDTYVRI 219
+M + + S G +W + +GQ L+ H V C+ S + ++ D +
Sbjct: 166 DMQILTASGDGTCALWDVESGQLLQSFH-GHGADVLCLDLAPSETGNTFVSGGCDKKAMV 224
Query: 220 HGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLK 265
++SG+ ++ F H S VN + + G + S S D T ++++L+
Sbjct: 225 WDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLR 270
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 24/182 (13%)
Query: 153 VMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTC-----IQFSRDNSQ 207
V+ + + +D + S SQ GKV +W T K H++ + C ++
Sbjct: 67 VLCMDWCKDKRRIVSSSQDGKVIVWDSFT------TNKEHAVTMPCTWVMACAYAPSGCA 120
Query: 208 ILTASFDTYVRIHGL---KSGKML---KEFRGHSSFVNDITFTADGHSVLSASSDGTVKM 261
I D ++ L K+ M K H+++++ +FT +L+AS DGT +
Sbjct: 121 IACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCAL 180
Query: 262 WNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVV---CNKTNTVVIMNMQGQIVRSL 318
W++++ + +F GA V + L P T + V C+K V M GQ V++
Sbjct: 181 WDVESGQLLQSFHGHGAD---VLCLDLAPSETGNTFVSGGCDKKAMVWDMR-SGQCVQAF 236
Query: 319 SS 320
+
Sbjct: 237 ET 238
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/258 (19%), Positives = 86/258 (33%), Gaps = 64/258 (24%)
Query: 57 WQQHQGLLPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSK--------SHVECARF 108
W P G I D + YP K +K +++ F
Sbjct: 108 WVMACAYAPSGCAI-----ACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSF 162
Query: 109 SPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASG 168
+ ++T S DG +W+ +G++ + D L LA S SG
Sbjct: 163 TNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCL------DLAPSETGNTFVSG 216
Query: 169 SQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLK----- 223
K +W + +GQC++ E H V +++ + S D R++ L+
Sbjct: 217 GCDKKAMVWDMRSGQCVQAFE-THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV 275
Query: 224 -------------------SGKML---------------KEFR-----GHSSFVNDITFT 244
SG++L K R GH + V+ + +
Sbjct: 276 AIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVS 335
Query: 245 ADGHSVLSASSDGTVKMW 262
DG + S S D T+++W
Sbjct: 336 PDGTAFCSGSWDHTLRVW 353
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 93/239 (38%), Gaps = 35/239 (14%)
Query: 35 LVGEVSVVPPSRLLALLGQALKWQQHQGLLPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQ 94
L+G V P SR L P GT + G ++ E
Sbjct: 7 LLGRVPAHPDSRCWFLAWN-----------PAGTLLASCGGDRRIRIWGTEGDSWICKSV 55
Query: 95 IKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLM----- 149
+ G + V +SP G YL + S D +W + QD+F +
Sbjct: 56 LSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK------------KNQDDFECVTTLEG 103
Query: 150 -EEAVMSLAYSRDSEMLASGSQSGKVKIWKIATG---QCLRKLEKAHSLGVTCIQFSRDN 205
E V S+A++ +LA+ S+ V +W++ +C+ L +H+ V + +
Sbjct: 104 HENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVL-NSHTQDVKHVVWHPSQ 162
Query: 206 SQILTASFDTYVRIHGLKSGKML--KEFRGHSSFVNDITFTADGHSVLSASSDGTVKMW 262
+ +AS+D V+++ + + GH S V + F G + S S D TV++W
Sbjct: 163 ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 7/127 (5%)
Query: 156 LAYSRDSEMLASGSQSGKVKIWKIATGQ--CLRKLEKAHSLGVTCIQFSRDNSQILTASF 213
LA++ +LAS +++IW C L + H V + +S + + +ASF
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 214 D--TYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTT---E 268
D T + + + GH + V + + G+ + + S D +V +W + E
Sbjct: 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141
Query: 269 CTSTFKS 275
C S S
Sbjct: 142 CVSVLNS 148
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 53/144 (36%), Gaps = 25/144 (17%)
Query: 150 EEAVMSLAYSRDSEMLASGSQSGKVKIWK---------------IATGQCLRKLEKAHSL 194
E V SLA+ + LAS S V+IW+ + +C+ L HS
Sbjct: 194 ESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSR 253
Query: 195 GVTCIQFSRDNSQILTASFDTYVRI--HGLKSGKMLKEF-------RGHSSFVNDITFTA 245
+ I + + + TA D +R+ S F + HS VN + +
Sbjct: 254 TIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNP 313
Query: 246 DGHSVL-SASSDGTVKMWNLKTTE 268
+L S S DG V W + E
Sbjct: 314 KEPGLLASCSDDGEVAFWKYQRPE 337
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 81/165 (49%), Gaps = 12/165 (7%)
Query: 101 SHVECARFSPD-GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYS 159
S V FSPD G+++IT D I ++ +G+ LKY +D+ ++ + +L++
Sbjct: 207 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF---LKY-IEDDQEPVQGGIFALSW- 261
Query: 160 RDSEMLASGSQSGKVKIWKIATGQCLRK--LEKAHSLGVTCIQFSRDNSQILTASFDTYV 217
DS+ A+ +++W + T +C++K L+K + N +I++ S D +
Sbjct: 262 LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTL 321
Query: 218 RIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMW 262
+ L ++LK GH+ + +T + ++S S DG + W
Sbjct: 322 NFYELGHDEVLKTISGHNKGITALTV----NPLISGSYDGRIXEW 362
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 53/266 (19%), Positives = 90/266 (33%), Gaps = 58/266 (21%)
Query: 60 HQGLLPPGTTIDLFRGKAAMK---DQEEEKYPTQLSKQIKFGSKSHVECARFSP--DGQY 114
H P I GK+A D + K P + Q S V +FSP QY
Sbjct: 23 HLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVV--QFTGHGSSVVTTVKFSPIKGSQY 80
Query: 115 LITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLA-------- 166
L +G G + VW +T K ++ + F ++ + +++ + L
Sbjct: 81 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN 140
Query: 167 --------SGSQSGKVKIWKIATGQCLRKLEKA--------------------------- 191
SG+ G+V C K +
Sbjct: 141 FGVFISWDSGNSLGEVSGHSQRINACHLKQSRPXRSXTVGDDGSVVFYQGPPFKFSASDR 200
Query: 192 --HSLG--VTCIQFSRDNSQ-ILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFT-- 244
H G V ++FS D+ + ++T D + KSG+ LK V F
Sbjct: 201 THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALS 260
Query: 245 -ADGHSVLSASSDGTVKMWNLKTTEC 269
D + +D T+++W++ T++C
Sbjct: 261 WLDSQKFATVGADATIRVWDVTTSKC 286
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 83/181 (45%), Gaps = 18/181 (9%)
Query: 98 GSKSHVECARF--SPDGQYLITGSVDGFIEVWNFTTGKIRKD---------LKYQAQDNF 146
G S V C + +Y++TGS D + VW D + + ++N
Sbjct: 201 GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENP 260
Query: 147 MLMEEAVMSLAYSR----DSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFS 202
+ +A R ++ SGS + +W +A +CL L H+ + +
Sbjct: 261 YFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS-GHTDRIYSTIYD 319
Query: 203 RDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMW 262
+ + ++AS DT +RI L++G+++ +GH++ V + + ++SA++DG+++ W
Sbjct: 320 HERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGW 377
Query: 263 N 263
+
Sbjct: 378 D 378
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 64/115 (55%), Gaps = 5/115 (4%)
Query: 196 VTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASS 255
+TC+QF +++ ++T + D +R++ + K L + GH V + + A G ++S S+
Sbjct: 125 ITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGST 181
Query: 256 DGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM 310
D TV++W++K CT F+ ++ ++ + KN ++ V ++ NT+ + +
Sbjct: 182 DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY--KNIKYIVTGSRDNTLHVWKL 234
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 80/194 (41%), Gaps = 39/194 (20%)
Query: 101 SHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR 160
S + C +F + Y+ITG+ D I V++ K L+ D V +L Y+
Sbjct: 123 SVITCLQF--EDNYVITGADDKMIRVYDSINKKFL--LQLSGHDG------GVWALKYAH 172
Query: 161 DSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQF------------SRDNS-Q 207
+L SGS V++W I G C E H+ V C+ SRDN+
Sbjct: 173 GG-ILVSGSTDRTVRVWDIKKGCCTHVFE-GHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 230
Query: 208 ILTASFDTYVRIHG------------LKSGKMLKEFRGHSSFVNDITFTADGHSVLSASS 255
+ ++ V HG ++ + RGH + V T + G+ V+S S
Sbjct: 231 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVSGHGNIVVSGSY 288
Query: 256 DGTVKMWNLKTTEC 269
D T+ +W++ +C
Sbjct: 289 DNTLIVWDVAQMKC 302
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 38/214 (17%), Positives = 86/214 (40%), Gaps = 32/214 (14%)
Query: 81 DQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKY 140
D +K+ QLS G V +++ G L++GS D + VW+ G +
Sbjct: 148 DSINKKFLLQLS-----GHDGGVWALKYA-HGGILVSGSTDRTVRVWDIKKGCCTH--VF 199
Query: 141 QAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHS------- 193
+ ++ + + + ++ + + +GS+ + +WK+ + + H
Sbjct: 200 EGHNSTV----RCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHT 255
Query: 194 -------LGV------TCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVND 240
+GV + S + +++ S+D + + + K L GH+ +
Sbjct: 256 PEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYS 315
Query: 241 ITFTADGHSVLSASSDGTVKMWNLKTTECTSTFK 274
+ + +SAS D T+++W+L+ E T +
Sbjct: 316 TIYDHERKRCISASMDTTIRIWDLENGELMYTLQ 349
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 82/166 (49%), Gaps = 12/166 (7%)
Query: 101 SHVECARFSPD-GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYS 159
S V FSPD G+++IT D I ++ +G+ LKY +D+ ++ + +L++
Sbjct: 207 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF---LKY-IEDDQEPVQGGIFALSW- 261
Query: 160 RDSEMLASGSQSGKVKIWKIATGQCLRK--LEKAHSLGVTCIQFSRDNSQILTASFDTYV 217
DS+ A+ +++W + T +C++K L+K + N +I++ S D +
Sbjct: 262 LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTL 321
Query: 218 RIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWN 263
+ L ++LK GH+ + +T + ++S S DG + W+
Sbjct: 322 NFYELGHDEVLKTISGHNKGITALTV----NPLISGSYDGRIMEWS 363
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 86/223 (38%), Gaps = 19/223 (8%)
Query: 60 HQGLLPPGTTIDLFRGKAAMK---DQEEEKYPTQLSKQIKFGSKSHVECARFSP--DGQY 114
H P I GK+A D + K P + Q S V +FSP QY
Sbjct: 23 HLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVV--QFTGHGSSVVTTVKFSPIKGSQY 80
Query: 115 LITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEML---ASGSQS 171
L +G G + VW +T K ++ + F ++ + +++ + L G +
Sbjct: 81 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN 140
Query: 172 GKVKI-WKIATGQCLRKLEKAHSLGVTCIQFSRDNS-QILTASFDTYVRIHGLKSGKMLK 229
V I W +G L ++ HS + + + +T D V + K
Sbjct: 141 FGVFISWD--SGNSLGEVS-GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA 197
Query: 230 EFRGH---SSFVNDITFTAD-GHSVLSASSDGTVKMWNLKTTE 268
R H SFV D+ F+ D G V++ SD + ++ K+ E
Sbjct: 198 SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 240
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 82/173 (47%), Gaps = 10/173 (5%)
Query: 100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEA------- 152
++ + +++ DG ++I+ V+ +WN +G + + + + + E
Sbjct: 149 RAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSL 208
Query: 153 VMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTAS 212
+ + + D + + G + G + +++I KL H ++ ++F+ N +L+AS
Sbjct: 209 GVDVEWVDDDKFVIPGPK-GAIFVYQITEKTPTGKLIGHHGP-ISVLEFNDTNKLLLSAS 266
Query: 213 FDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLK 265
D +RI +G F GHS + ++ D V+S S DG+V++W+LK
Sbjct: 267 DDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGD-DKVISCSMDGSVRLWSLK 318
Score = 35.0 bits (79), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 196 VTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASS 255
VTC+ +S D + I+T + +R+ K+G +L H + + + + DG ++S
Sbjct: 111 VTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDV 169
Query: 256 DGTVKMWNLKTTECTSTF--KSLGASDI 281
+ +WN+ + F K G S I
Sbjct: 170 ENVTILWNVISGTVMQHFELKETGGSSI 197
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 81/181 (44%), Gaps = 18/181 (9%)
Query: 98 GSKSHVECARF--SPDGQYLITGSVDGFIEVWNFTTGKIRKD---------LKYQAQDN- 145
G S V C + +Y++TGS D + VW D + + ++N
Sbjct: 201 GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENP 260
Query: 146 ---FMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFS 202
+L S ++ SGS + +W +A +CL L H+ + +
Sbjct: 261 YFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILS-GHTDRIYSTIYD 319
Query: 203 RDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMW 262
+ + ++AS DT +RI L++G++ +GH++ V + + ++SA++DG+++ W
Sbjct: 320 HERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGW 377
Query: 263 N 263
+
Sbjct: 378 D 378
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 64/115 (55%), Gaps = 5/115 (4%)
Query: 196 VTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASS 255
+TC+QF +++ ++T + D +R++ + K L + GH V + + A G ++S S+
Sbjct: 125 ITCLQF--EDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGST 181
Query: 256 DGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM 310
D TV++W++K CT F+ ++ ++ + KN ++ V ++ NT+ + +
Sbjct: 182 DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY--KNIKYIVTGSRDNTLHVWKL 234
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 80/194 (41%), Gaps = 39/194 (20%)
Query: 101 SHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR 160
S + C +F + Y+ITG+ D I V++ K L+ D V +L Y+
Sbjct: 123 SVITCLQF--EDNYVITGADDKXIRVYDSINKKFL--LQLSGHDG------GVWALKYAH 172
Query: 161 DSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQF------------SRDNS-Q 207
+L SGS V++W I G C E H+ V C+ SRDN+
Sbjct: 173 GG-ILVSGSTDRTVRVWDIKKGCCTHVFE-GHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 230
Query: 208 ILTASFDTYVRIHG------------LKSGKMLKEFRGHSSFVNDITFTADGHSVLSASS 255
+ ++ V HG ++ + RGH + V T + G+ V+S S
Sbjct: 231 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVR--TVSGHGNIVVSGSY 288
Query: 256 DGTVKMWNLKTTEC 269
D T+ +W++ +C
Sbjct: 289 DNTLIVWDVAQXKC 302
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/214 (17%), Positives = 86/214 (40%), Gaps = 32/214 (14%)
Query: 81 DQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKY 140
D +K+ QLS G V +++ G L++GS D + VW+ G +
Sbjct: 148 DSINKKFLLQLS-----GHDGGVWALKYA-HGGILVSGSTDRTVRVWDIKKGCCTH--VF 199
Query: 141 QAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHS------- 193
+ ++ + + + ++ + + +GS+ + +WK+ + + H
Sbjct: 200 EGHNSTV----RCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHT 255
Query: 194 -------LGV------TCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVND 240
+GV + S + +++ S+D + + + K L GH+ +
Sbjct: 256 PEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYS 315
Query: 241 ITFTADGHSVLSASSDGTVKMWNLKTTECTSTFK 274
+ + +SAS D T+++W+L+ E T +
Sbjct: 316 TIYDHERKRCISASXDTTIRIWDLENGELXYTLQ 349
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 31/189 (16%)
Query: 103 VECARFSP-DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRD 161
VE ++ P D + S D ++VW+ T Q D F EE V S S
Sbjct: 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNT--------LQTADVFNF-EETVYSHHMSPV 152
Query: 162 SE---MLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQIL-TASFDTYV 217
S ++A G++ KV++ + +G C L+ H + + +S IL TAS D+ V
Sbjct: 153 STKHCLVAVGTRGPKVQLCDLKSGSCSHILQ-GHRQEILAVSWSPRYDYILATASADSRV 211
Query: 218 RI----------------HGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKM 261
++ +G KS + H+ VN + FT+DG +L+ +D +++
Sbjct: 212 KLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRL 271
Query: 262 WNLKTTECT 270
WN E T
Sbjct: 272 WNSSNGENT 280
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/182 (17%), Positives = 71/182 (39%), Gaps = 21/182 (11%)
Query: 98 GSKSHVECARFSPDGQYLI-TGSVDGFIEVWN-------FTTGKIRKDLKYQAQDNFMLM 149
G + + +SP Y++ T S D +++W+ T K QA ++
Sbjct: 184 GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTA 243
Query: 150 EEA-VMSLAYSRDSEMLASGSQSGKVKIWK--------IATGQCLRKLEKAHSLGVTCIQ 200
V L ++ D L + ++++W + G+ +K V+C
Sbjct: 244 HNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSC-- 301
Query: 201 FSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVK 260
+S+ + + + + ++ + SG+ + +GH V+ F ++ + S S D +
Sbjct: 302 --GCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNIL 359
Query: 261 MW 262
W
Sbjct: 360 AW 361
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 68/125 (54%), Gaps = 7/125 (5%)
Query: 150 EEAVMSLAYSRDS---EMLASGSQSGKVKIWKIA-TGQCLRKLEKAHSLGVTCIQFSRDN 205
++++ L++S + L +GS + V+ W++ +GQ + K ++ H+ V + +S D
Sbjct: 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG 98
Query: 206 SQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFT-ADGHS-VLSASSDGTVKMWN 263
S++ TAS D ++ L S + + + H + V I + A +S V++ S D T+K W+
Sbjct: 99 SKVFTASCDKTAKMWDLSSNQAI-QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWD 157
Query: 264 LKTTE 268
+++
Sbjct: 158 TRSSN 162
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 196 VTCIQFSRDN---SQILTASFDTYVRIHGLK-SGKML-KEFRGHSSFVNDITFTADGHSV 250
+ C+ FS + ++ S+ VR ++ SG+ + K + H+ V D+ ++ DG V
Sbjct: 42 IGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKV 101
Query: 251 LSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLL 289
+AS D T KMW+L + + + D V +IH +
Sbjct: 102 FTASCDKTAKMWDLSSNQAI----QIAQHDAPVKTIHWI 136
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 77/176 (43%), Gaps = 6/176 (3%)
Query: 92 SKQIKFGSKSHVECA-RFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLME 150
++QI + V CA S +++ TG G ++VW+ + + + +Q + + +
Sbjct: 42 ARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPV---SQLDCLNRD 97
Query: 151 EAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSL-GVTCIQFSRDNSQIL 209
+ S D L G ++ + IW +A K E S + S D+
Sbjct: 98 NYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCF 157
Query: 210 TASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLK 265
+ D + + L + ++++F+GH+ + I + DG + + D TV+ W+L+
Sbjct: 158 SCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR 213
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 9/79 (11%)
Query: 98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLA 157
G C S DG L TG +D + W+ G+ + + +Q + SL
Sbjct: 181 GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQ---------IFSLG 231
Query: 158 YSRDSEMLASGSQSGKVKI 176
Y E LA G +S V++
Sbjct: 232 YCPTGEWLAVGMESSNVEV 250
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 17/152 (11%)
Query: 164 MLASGSQSGKVKIWKIATGQCLRKLEKAHSLGV---TCIQFSRDNSQILTASFDTYVRIH 220
++ SGS K+WK G + L+ AH+ V + FS + + LTAS D +++
Sbjct: 116 VVISGSWDKTAKVWK--EGSLVYNLQ-AHNASVWDAKVVSFSEN--KFLTASADKTIKL- 169
Query: 221 GLKSGKMLKEFRG-HSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGAS 279
++ K++K F G H+ V + DGH +S S+DG +K+ + T + T++
Sbjct: 170 -WQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDXHTGDVLRTYE---GH 224
Query: 280 DIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ 311
+ V I LLP V C + TV I + +
Sbjct: 225 ESFVYCIKLLPNG--DIVSCGEDRTVRIWSKE 254
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 76/159 (47%), Gaps = 14/159 (8%)
Query: 105 CARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEM 164
C+ DG +I+GS D +VW L Y Q + + +A + +++S + +
Sbjct: 108 CSLSFQDG-VVISGSWDKTAKVWK------EGSLVYNLQAHNASVWDAKV-VSFSENKFL 159
Query: 165 LASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKS 224
AS ++ +K+W+ + ++ H+ V + D+ ++ S D +++ +
Sbjct: 160 TASADKT--IKLWQ--NDKVIKTFSGIHNDVVRHLAVV-DDGHFISCSNDGLIKLVDXHT 214
Query: 225 GKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWN 263
G +L+ + GH SFV I +G ++S D TV++W+
Sbjct: 215 GDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWS 252
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 70/146 (47%), Gaps = 13/146 (8%)
Query: 124 IEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ 183
+ VWN +G + L + + V S+ +S D L+ G +G V I+ + +
Sbjct: 115 VYVWNADSGSVSA-LAETDESTY------VASVKWSHDGSFLSVGLGNGLVDIYDVESQT 167
Query: 184 CLRKLEKAHSLGVTCIQFSRDNSQILTA-SFDTYVRIHGLK-SGKMLKEFRGHSSFVNDI 241
LR + H V C+ ++R +L++ S + H ++ + + +GHSS V +
Sbjct: 168 KLRTM-AGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGL 223
Query: 242 TFTADGHSVLSASSDGTVKMWNLKTT 267
+ +DG + S +D V++W+ +++
Sbjct: 224 AWRSDGLQLASGGNDNVVQIWDARSS 249
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 69/171 (40%), Gaps = 11/171 (6%)
Query: 98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLA 157
G S V + DG L +G D +++W+ R + + N +AV
Sbjct: 215 GHSSEVCGLAWRSDGLQLASGGNDNVVQIWD-----ARSSIPKFTKTNHNAAVKAVAWCP 269
Query: 158 YSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQIL-TASF-DT 215
+ + G+ ++ W ATG + ++ VT + +S + +I+ T F D
Sbjct: 270 WQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQ--VTSLIWSPHSKEIMSTHGFPDN 327
Query: 216 YVRIHGLKSGKMLK--EFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNL 264
+ I S + K + H + V + DG + +A+SD +K W +
Sbjct: 328 NLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRV 378
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 24/142 (16%)
Query: 164 MLASGSQSGKVKIWKIATGQCLRKLEKAHSL-----GVTCIQFSRDNSQILTA----SFD 214
++A+G +G V+I +++T + L E HS+ + ++FS S + A SF
Sbjct: 209 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFG 268
Query: 215 TYV--------RIHGLK-----SGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKM 261
RI L S L EF HSS+V ++F G ++ SA DG ++
Sbjct: 269 CITLYETEFGERIGSLSVPTHSSQASLGEF-AHSSWVMSLSFNDSGETLCSAGWDGKLRF 327
Query: 262 WNLKTTECTSTFKSLGASDIAV 283
W++KT E +T ++ DI +
Sbjct: 328 WDVKTKERITTL-NMHCDDIEI 348
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 153 VMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKL 188
VMSL+++ E L S GK++ W + T + + L
Sbjct: 304 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL 339
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 24/142 (16%)
Query: 164 MLASGSQSGKVKIWKIATGQCLRKLEKAHSL-----GVTCIQFSRDNSQILTA----SFD 214
++A+G +G V+I +++T + L E HS+ + ++FS S + A SF
Sbjct: 199 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFG 258
Query: 215 TYV--------RIHGLK-----SGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKM 261
RI L S L EF HSS+V ++F G ++ SA DG ++
Sbjct: 259 CITLYETEFGERIGSLSVPTHSSQASLGEF-AHSSWVMSLSFNDSGETLCSAGWDGKLRF 317
Query: 262 WNLKTTECTSTFKSLGASDIAV 283
W++KT E +T ++ DI +
Sbjct: 318 WDVKTKERITTL-NMHCDDIEI 338
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 153 VMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKL 188
VMSL+++ E L S GK++ W + T + + L
Sbjct: 294 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL 329
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 67/153 (43%), Gaps = 13/153 (8%)
Query: 130 TTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSE----MLASGSQSGKVKIWKIATGQCL 185
+ G+IR Y D +E + A++ DS +LA G ++I T QC+
Sbjct: 48 SQGEIRLLQSYVDAD----ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCI 103
Query: 186 RKLEKAHSLGVTCIQF-SRDNSQILTASFDTYVRIHGLKSGKMLKEF---RGHSSFVNDI 241
+ H + ++F RD + +L+ S D +R+ +++ ++ F GH V
Sbjct: 104 KHY-VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 162
Query: 242 TFTADGHSVLSASSDGTVKMWNLKTTECTSTFK 274
+ G ++S D ++K+W + + + K
Sbjct: 163 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 195
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 58/133 (43%), Gaps = 19/133 (14%)
Query: 100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKY--QAQDNFMLM------EE 151
+++V+C R+ G +++ S + I W GK+ D+ ++ N ++ +
Sbjct: 226 RNYVDCVRWL--GDLILSKSCENAIVCWK--PGKMEDDIDKIKPSESNVTILGRFDYSQC 281
Query: 152 AVMSLAYSRD--SEMLASGSQSGKVKIWKIAT-----GQCLRKLEKAHSLGVTCIQFSRD 204
+ + +S D +MLA G+Q GK+ +W + +C + FSRD
Sbjct: 282 DIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRD 341
Query: 205 NSQILTASFDTYV 217
+S ++ D +
Sbjct: 342 SSILIAVCDDASI 354
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 67/153 (43%), Gaps = 13/153 (8%)
Query: 130 TTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSE----MLASGSQSGKVKIWKIATGQCL 185
+ G+IR Y D +E + A++ DS +LA G ++I T QC+
Sbjct: 89 SQGEIRLLQSYVDAD----ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCI 144
Query: 186 RKLEKAHSLGVTCIQF-SRDNSQILTASFDTYVRIHGLKSGKMLKEF---RGHSSFVNDI 241
+ H + ++F RD + +L+ S D +R+ +++ ++ F GH V
Sbjct: 145 KHY-VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 203
Query: 242 TFTADGHSVLSASSDGTVKMWNLKTTECTSTFK 274
+ G ++S D ++K+W + + + K
Sbjct: 204 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 236
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 58/133 (43%), Gaps = 19/133 (14%)
Query: 100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKY--QAQDNFMLM------EE 151
+++V+C R+ G +++ S + I W GK+ D+ ++ N ++ +
Sbjct: 267 RNYVDCVRWL--GDLILSKSCENAIVCWK--PGKMEDDIDKIKPSESNVTILGRFDYSQC 322
Query: 152 AVMSLAYSRD--SEMLASGSQSGKVKIWKIAT-----GQCLRKLEKAHSLGVTCIQFSRD 204
+ + +S D +MLA G+Q GK+ +W + +C + FSRD
Sbjct: 323 DIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRD 382
Query: 205 NSQILTASFDTYV 217
+S ++ D +
Sbjct: 383 SSILIAVCDDASI 395
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 67/153 (43%), Gaps = 13/153 (8%)
Query: 130 TTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSE----MLASGSQSGKVKIWKIATGQCL 185
+ G+IR Y D +E + A++ DS +LA G ++I T QC+
Sbjct: 52 SQGEIRLLQSYVDAD----ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCI 107
Query: 186 RKLEKAHSLGVTCIQF-SRDNSQILTASFDTYVRIHGLKSGKMLKEF---RGHSSFVNDI 241
+ H + ++F RD + +L+ S D +R+ +++ ++ F GH V
Sbjct: 108 KHY-VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 166
Query: 242 TFTADGHSVLSASSDGTVKMWNLKTTECTSTFK 274
+ G ++S D ++K+W + + + K
Sbjct: 167 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 199
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 58/133 (43%), Gaps = 19/133 (14%)
Query: 100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKY--QAQDNFMLM------EE 151
+++V+C R+ G +++ S + I W GK+ D+ ++ N ++ +
Sbjct: 230 RNYVDCVRWL--GDLILSKSCENAIVCWK--PGKMEDDIDKIKPSESNVTILGRFDYSQC 285
Query: 152 AVMSLAYSRD--SEMLASGSQSGKVKIWKIAT-----GQCLRKLEKAHSLGVTCIQFSRD 204
+ + +S D +MLA G+Q GK+ +W + +C + FSRD
Sbjct: 286 DIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRD 345
Query: 205 NSQILTASFDTYV 217
+S ++ D +
Sbjct: 346 SSILIAVCDDASI 358
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 60/133 (45%), Gaps = 9/133 (6%)
Query: 150 EEAVMSLAYSRDSE----MLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQF-SRD 204
+E + A++ DS +LA G ++I T QC++ H + ++F RD
Sbjct: 68 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHY-VGHGNAINELKFHPRD 126
Query: 205 NSQILTASFDTYVRIHGLKSGKMLKEF---RGHSSFVNDITFTADGHSVLSASSDGTVKM 261
+ +L+ S D +R+ +++ ++ F GH V + G ++S D ++K+
Sbjct: 127 PNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKL 186
Query: 262 WNLKTTECTSTFK 274
W + + + K
Sbjct: 187 WRINSKRMMNAIK 199
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 58/133 (43%), Gaps = 19/133 (14%)
Query: 100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKY--QAQDNFMLM------EE 151
+++V+C R+ G +++ S + I W GK+ D+ ++ N ++ +
Sbjct: 230 RNYVDCVRWL--GDLILSKSCENAIVCWK--PGKMEDDIDKIKPSESNVTILGRFDYSQC 285
Query: 152 AVMSLAYSRD--SEMLASGSQSGKVKIWKIAT-----GQCLRKLEKAHSLGVTCIQFSRD 204
+ + +S D +MLA G+Q GK+ +W + +C + FSRD
Sbjct: 286 DIWYMRFSTDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRD 345
Query: 205 NSQILTASFDTYV 217
+S ++ D +
Sbjct: 346 SSILIAVCDDASI 358
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 60/133 (45%), Gaps = 9/133 (6%)
Query: 150 EEAVMSLAYSRDSE----MLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQF-SRD 204
+E + A++ DS +LA G ++I T QC++ H + ++F RD
Sbjct: 69 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHY-VGHGNAINELKFHPRD 127
Query: 205 NSQILTASFDTYVRIHGLKSGKMLKEF---RGHSSFVNDITFTADGHSVLSASSDGTVKM 261
+ +L+ S D +R+ +++ ++ F GH V + G ++S D ++K+
Sbjct: 128 PNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKL 187
Query: 262 WNLKTTECTSTFK 274
W + + + K
Sbjct: 188 WRINSKRMMNAIK 200
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 58/133 (43%), Gaps = 19/133 (14%)
Query: 100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKY--QAQDNFMLM------EE 151
+++V+C R+ G +++ S + I W GK+ D+ ++ N ++ +
Sbjct: 231 RNYVDCVRWL--GDLILSKSCENAIVCWK--PGKMEDDIDKIKPSESNVTILGRFDYSQC 286
Query: 152 AVMSLAYSRD--SEMLASGSQSGKVKIWKIAT-----GQCLRKLEKAHSLGVTCIQFSRD 204
+ + +S D +MLA G+Q GK+ +W + +C + FSRD
Sbjct: 287 DIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRD 346
Query: 205 NSQILTASFDTYV 217
+S ++ D +
Sbjct: 347 SSILIAVCDDASI 359
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 88/208 (42%), Gaps = 28/208 (13%)
Query: 115 LITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLME---EAVMSLAYSRDSE-MLASGSQ 170
+ +GS D + VW G + L+ + + +E + V +A+ ++ +L S
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLR----EPVITLEGHTKRVGIVAWHPTAQNVLLSAGX 152
Query: 171 SGKVKIWKIATGQCLRKL-EKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLK 229
+ +W + TG + L H + + +SRD + I T+ D VR+ + G ++
Sbjct: 153 DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVA 212
Query: 230 E----FRG----HSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDI 281
E G H+ FV++ G S +S V +W+ K E + L ++
Sbjct: 213 EKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQ---VALWDTKHLE-----EPLSLQEL 264
Query: 282 AVNSIHLLP---KNTEHFVVCNKTNTVV 306
+S LLP +T +C K ++ +
Sbjct: 265 DTSSGVLLPFFDPDTNIVYLCGKGDSSI 292
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 89/208 (42%), Gaps = 28/208 (13%)
Query: 115 LITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLME---EAVMSLAYSRDSE-MLASGSQ 170
+ +GS D + VW G + L+ + + +E + V +A+ ++ +L S
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLR----EPVITLEGHTKRVGIVAWHPTAQNVLLSAGC 152
Query: 171 SGKVKIWKIATGQCLRKL-EKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLK 229
+ +W + TG + L H + + +SRD + I T+ D VR+ + G ++
Sbjct: 153 DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVA 212
Query: 230 E----FRG----HSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDI 281
E G H+ FV++ G S + S+ V +W+ K E + L ++
Sbjct: 213 EKDRPHEGTRPVHAVFVSEGKILTTGFSRM---SERQVALWDTKHLE-----EPLSLQEL 264
Query: 282 AVNSIHLLP---KNTEHFVVCNKTNTVV 306
+S LLP +T +C K ++ +
Sbjct: 265 DTSSGVLLPFFDPDTNIVYLCGKGDSSI 292
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/85 (20%), Positives = 43/85 (50%)
Query: 191 AHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSV 250
H +T ++++++ + + S D+ + +G+ L GH+ + I
Sbjct: 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYC 89
Query: 251 LSASSDGTVKMWNLKTTECTSTFKS 275
++ S+D ++K+W++ +C +T+KS
Sbjct: 90 VTGSADYSIKLWDVSNGQCVATWKS 114
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 71/174 (40%), Gaps = 31/174 (17%)
Query: 106 ARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEML 165
A +S G+Y+I G DG I ++ + Y+ D+ L E+++ + +S D
Sbjct: 181 AGWSTKGKYIIAGHKDGKISKYDVSN-------NYEYVDSIDLHEKSISDMQFSPDLTYF 233
Query: 166 ASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCI------------QFSRD------NSQ 207
+ S+ + ++T Q L+K E L I Q ++D N
Sbjct: 234 ITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEG 293
Query: 208 ILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKM 261
A F Y +I + G++ +GH +N + + G S S DG +++
Sbjct: 294 KFEARF--YHKIFEEEIGRV----QGHFGPLNTVAISPQGTSYASGGEDGFIRL 341
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 16/141 (11%)
Query: 148 LMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ--CLRKL-EKAHSLGVTCIQFSRD 204
L +E + S +S+ +LA+GS K+K+ + + L E AH + + +
Sbjct: 12 LYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPH 69
Query: 205 NSQILTASFDTYVRIHGLKSG-------KMLKEFRGHSSFVNDITFTADGHSVLSASSDG 257
S + SFD+ V I + +L GH + V + ++ DG+ + + S D
Sbjct: 70 TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDK 129
Query: 258 TVKMWNLKTT----ECTSTFK 274
+V +W + EC S +
Sbjct: 130 SVWIWETDESGEEYECISVLQ 150
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 14/130 (10%)
Query: 53 QALKWQQHQGLLPPGT---TIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFS 109
+++ W+ H LL G+ T+ ++ A ++ + + L I+ G ++ V+ +S
Sbjct: 62 RSVAWRPHTSLLAAGSFDSTVSIW----AKEESADRTFEMDLLAIIE-GHENEVKGVAWS 116
Query: 110 PDGQYLITGSVDGFIEVWNFT-TGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASG 168
DG YL T S D + +W +G+ +Y+ + V + + +LAS
Sbjct: 117 NDGYYLATCSRDKSVWIWETDESGE-----EYECISVLQEHSQDVKHVIWHPSEALLASS 171
Query: 169 SQSGKVKIWK 178
S V+IWK
Sbjct: 172 SYDDTVRIWK 181
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 27/165 (16%)
Query: 125 EVWNF-------TTGKIRKDLKYQA--QDNFMLME--------EAVMSLAYSRDSEMLAS 167
++W+F TG + +K + D+F L++ +A+ S+A+ + +LA+
Sbjct: 16 KIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAA 75
Query: 168 GSQSGKVKIWKIATG------QCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHG 221
GS V IW L + + H V + +S D + T S D V I
Sbjct: 76 GSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE 135
Query: 222 L-KSGK---MLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMW 262
+SG+ + + HS V + + + S+S D TV++W
Sbjct: 136 TDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIW 180
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 103 VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDS 162
V FSP ++L T DG I WN T RK +K A+ N E++V+ +A S +
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQT---RKKIKNFAKFN----EDSVVKIACSDNI 306
Query: 163 EMLASGSQSGK 173
LA+ + K
Sbjct: 307 LCLATSDDTFK 317
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 238 VNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTF 273
VN I F+ + +A SDG + WNL+T + F
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 103 VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDS 162
V FSP ++L T DG I WN T RK +K A+ N E++V+ +A S +
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQT---RKKIKNFAKFN----EDSVVKIACSDNI 306
Query: 163 EMLASGSQSGK 173
LA+ + K
Sbjct: 307 LCLATSDDTFK 317
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 238 VNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIA 282
VN I F+ + +A SDG + WNL+T + F +
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVV 298
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 103 VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDS 162
V FSP ++L T DG I WN T RK +K A+ N E++V+ +A S +
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQT---RKKIKNFAKFN----EDSVVKIACSDNI 306
Query: 163 EMLASGSQSGK 173
LA+ + K
Sbjct: 307 LCLATSDDTFK 317
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 238 VNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTF 273
VN I F+ + +A SDG + WNL+T + F
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 103 VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDS 162
V FSP ++L T DG I WN T RK +K A+ N E++V+ +A S +
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQT---RKKIKNFAKFN----EDSVVKIACSDNI 306
Query: 163 EMLASGSQSGK 173
LA+ + K
Sbjct: 307 LCLATSDDTFK 317
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 238 VNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTF 273
VN I F+ + +A SDG + WNL+T + F
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289
>pdb|3FGB|A Chain A, Crystal Structure Of The Q89zh8_bactn Protein From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr289b.
pdb|3FGB|B Chain B, Crystal Structure Of The Q89zh8_bactn Protein From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr289b
Length = 361
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 15/56 (26%)
Query: 61 QGLLPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLI 116
G L P + + F+G A K+++E K H+ C R +PDG+YL
Sbjct: 122 DGSLLPASEVVKFKGSGADKERQE---------------KPHLHCVRITPDGKYLF 162
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 249 SVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIM 308
+V S G + +WN + + K +GA ++ + P NT F + T +
Sbjct: 135 TVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGG-SITGLKFNPLNTNQFYASSMEGTTRLQ 193
Query: 309 NMQGQIVRSLSS 320
+ +G I+R +S
Sbjct: 194 DFKGNILRVFAS 205
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 249 SVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIM 308
+V S G + +WN + + K +GA ++ + P NT F + T +
Sbjct: 134 TVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGG-SITGLKFNPLNTNQFYASSMEGTTRLQ 192
Query: 309 NMQGQIVRSLSS 320
+ +G I+R +S
Sbjct: 193 DFKGNILRVFAS 204
>pdb|2VDU|B Chain B, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
pdb|2VDU|D Chain D, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
Length = 450
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 208 ILTASFDTYVRI-HGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKT 266
I+T+ D +++I H + + K GH FV+ I D + +LSA D + W+ KT
Sbjct: 213 IITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGKD-YLLLSAGGDDKIFAWDWKT 271
Query: 267 TECTSTFKSLGASDIAVNSIHLLP 290
+ STF +N HL P
Sbjct: 272 GKNLSTFDYNSLIKPYLNDQHLAP 295
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 249 SVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIM 308
+V S G + +WN + + K +GA ++ + P NT F + T +
Sbjct: 134 TVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGG-SITGLKFNPLNTNQFYASSMEGTTRLQ 192
Query: 309 NMQGQIVRSLSS 320
+ +G I+R +S
Sbjct: 193 DFKGNILRVFAS 204
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 234 HSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNT 293
H V ++ +DG +S D +VK+W+L + KS A VN + P
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ---KAVLKSYNAHSSEVNCVAACPGKD 194
Query: 294 EHFVVCNKTNTVVIMNMQ 311
F+ C + +++ + +
Sbjct: 195 TIFLSCGEDGRILLWDTR 212
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 66/151 (43%), Gaps = 19/151 (12%)
Query: 153 VMSLAYSRDSE-MLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTA 211
V L+++ SE +LA+GS V +W + + ++H + +Q+S N IL A
Sbjct: 280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL-A 338
Query: 212 SFDTYVRIHGLKSGKMLKE----------------FRGHSSFVNDITFTADGHSVL-SAS 254
S T R+H K+ +E GH++ ++D ++ + ++ S S
Sbjct: 339 SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVS 398
Query: 255 SDGTVKMWNLKTTECTSTFKSLGASDIAVNS 285
D +++W + + AS++ N+
Sbjct: 399 EDNIMQVWQMAENVYNDEEPEIPASELETNT 429
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 66/151 (43%), Gaps = 19/151 (12%)
Query: 153 VMSLAYSRDSE-MLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTA 211
V L+++ SE +LA+GS V +W + + ++H + +Q+S N IL A
Sbjct: 282 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL-A 340
Query: 212 SFDTYVRIHGLKSGKMLKE----------------FRGHSSFVNDITFTADGHSVL-SAS 254
S T R+H K+ +E GH++ ++D ++ + ++ S S
Sbjct: 341 SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVS 400
Query: 255 SDGTVKMWNLKTTECTSTFKSLGASDIAVNS 285
D +++W + + AS++ N+
Sbjct: 401 EDNIMQVWQMAENVYNDEEPEIPASELETNT 431
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 57/147 (38%), Gaps = 20/147 (13%)
Query: 154 MSLAYSRDSEMLASGSQSGKVKIWKIATGQCLR-KLEKAHSLGVTCIQFSRD--NSQILT 210
+ A+ + +LAS S GKV IWK G+ + + HS V +Q++ +L
Sbjct: 59 VDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLV 118
Query: 211 ASFDTYVRIHGLKSGKMLKE--FRGHSSFVNDITF-------------TADGHSVLSASS 255
AS D V + K H+ VN ++ T + ++ +
Sbjct: 119 ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA 178
Query: 256 DGTVKMWNLKTTECTSTFKSL--GASD 280
D VK+W + T +S G SD
Sbjct: 179 DNLVKIWKYNSDAQTYVLESTLEGHSD 205
>pdb|3NBV|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With Amp-Pnp
And Fructose
pdb|3NBV|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With Amp-Pnp
And Fructose
pdb|3NBW|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrazole Compound
pdb|3NBW|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrazole Compound
pdb|3NC2|A Chain A, X-Ray Structure Of Ketohexokinase With A Quinazoline
pdb|3NC2|B Chain B, X-Ray Structure Of Ketohexokinase With A Quinazoline
pdb|3NC9|A Chain A, X-Ray Structure Of Ketohexokinase Complexed With An
Indazole Compound
pdb|3NC9|B Chain B, X-Ray Structure Of Ketohexokinase Complexed With An
Indazole Compound
pdb|3NCA|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A Thieno
Pyridinol Compound
pdb|3NCA|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A Thieno
Pyridinol Compound
pdb|3RO4|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With An
Indazole Compound Derivative
pdb|3RO4|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With An
Indazole Compound Derivative
pdb|3Q92|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 1
pdb|3Q92|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 1
pdb|3QA2|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 2
pdb|3QA2|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 2
pdb|3QAI|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 3
pdb|3QAI|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 3
Length = 313
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 335 PRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLN--TVDSVDG----FI 388
PRG I CVG ++ V+ L+ +Y KE + ++ L + G + N TV S+ G F+
Sbjct: 16 PRGSQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTVLSLLGAPCAFM 75
Query: 389 ADINNGH 395
+ GH
Sbjct: 76 GSMAPGH 82
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 248 HSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTV 305
H V + DG + +W+++ + T L A + + +H P N EH C++ ++
Sbjct: 250 HVVATGGQDGMLSIWDVR--QGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSL 305
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 164 MLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQ-ILTASFD 214
++A+G Q G + IW + G L KAH + + F N + + T S D
Sbjct: 251 VVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSED 302
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 57/147 (38%), Gaps = 20/147 (13%)
Query: 154 MSLAYSRDSEMLASGSQSGKVKIWKIATGQCLR-KLEKAHSLGVTCIQFSRD--NSQILT 210
+ A+ + +LAS S GKV IWK G+ + + HS V +Q++ +L
Sbjct: 59 VDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLV 118
Query: 211 ASFDTYVRIHGLKSGKMLKE--FRGHSSFVNDITF-------------TADGHSVLSASS 255
AS D V + K H+ VN ++ T + ++ +
Sbjct: 119 ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA 178
Query: 256 DGTVKMWNLKTTECTSTFKSL--GASD 280
D VK+W + T +S G SD
Sbjct: 179 DNLVKIWKYNSDAQTYVLESTLEGHSD 205
>pdb|2QFL|A Chain A, Structure Of Suhb: Inositol Monophosphatase And Extragenic
Suppressor From E. Coli
Length = 267
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 10/41 (24%)
Query: 104 ECARFSPDGQ------YLITGSVDGFIEV----WNFTTGKI 134
ECA F G Y+ G VDGF E+ W+F G++
Sbjct: 178 ECADFRATGSAALDLAYVAAGRVDGFFEIGLRPWDFAAGEL 218
>pdb|2HLZ|A Chain A, Crystal Structure Of Human Ketohexokinase (Casp Target)
pdb|2HLZ|B Chain B, Crystal Structure Of Human Ketohexokinase (Casp Target)
pdb|2HLZ|C Chain C, Crystal Structure Of Human Ketohexokinase (Casp Target)
pdb|2HLZ|D Chain D, Crystal Structure Of Human Ketohexokinase (Casp Target)
Length = 312
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 335 PRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNT 380
PRG I CVG ++ V+ L+ +Y KE + ++ L + G + N+
Sbjct: 15 PRGSQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNS 60
>pdb|3SCY|A Chain A, Crystal Structure Of A Hypothetical Bacterial 6-
Phosphogluconolactonase (Bf1038) From Bacteroides
Fragilis Nctc 9343 At 1.50 A Resolution
Length = 361
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 16/58 (27%)
Query: 59 QHQGLLPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLI 116
Q LLP I+ K + D+E + P H+ C R +PDG+YL+
Sbjct: 129 QDGALLPASDVIEF---KGSGPDKERQTXP-------------HLHCVRITPDGKYLL 170
>pdb|1FLG|A Chain A, Crystal Structure Of The Quinoprotein Ethanol
Dehydrogenase From Pseudomonas Aeruginosa
pdb|1FLG|B Chain B, Crystal Structure Of The Quinoprotein Ethanol
Dehydrogenase From Pseudomonas Aeruginosa
Length = 582
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 208 ILTASFDTYVRIHGLKSGKMLKEFRGHSSFVN-DITFTADGHSVL--SASSDGTVKMWNL 264
+ T + D Y + KSGK L +F+ S V+ IT+ DG L + G V +W
Sbjct: 500 VFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTVGYGGAVPLWGG 559
Query: 265 KTTECT 270
+ T
Sbjct: 560 DMADLT 565
>pdb|3V43|A Chain A, Crystal Structure Of Moz
Length = 112
Score = 29.6 bits (65), Expect = 3.8, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 80 KDQEEEKYPTQLSKQIKFGSKSHVECARFSPD 111
K+Q EK P +L G+ H C +FSP+
Sbjct: 15 KEQNREKKPEELISCADCGNSGHPSCLKFSPE 46
>pdb|2LN0|A Chain A, Structure Of Moz
Length = 110
Score = 29.6 bits (65), Expect = 3.8, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 80 KDQEEEKYPTQLSKQIKFGSKSHVECARFSPD 111
K+Q EK P +L G+ H C +FSP+
Sbjct: 13 KEQNREKKPEELISCADCGNSGHPSCLKFSPE 44
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 57/147 (38%), Gaps = 20/147 (13%)
Query: 154 MSLAYSRDSEMLASGSQSGKVKIWKIATGQCLR-KLEKAHSLGVTCIQFSRD--NSQILT 210
+ A+ + +LAS S GKV IWK G+ + + HS V +Q++ +L
Sbjct: 59 VDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLV 118
Query: 211 ASFDTYVRIHGLKSGKMLKE--FRGHSSFVNDITF-------------TADGHSVLSASS 255
AS D V + K H+ VN ++ T + ++ +
Sbjct: 119 ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA 178
Query: 256 DGTVKMWNLKTTECTSTFKSL--GASD 280
D VK+W + T +S G SD
Sbjct: 179 DNLVKIWKYNSDAQTYVLESTLEGHSD 205
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 354 IQQYLKESNLMKTLQ---CLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPE 410
++ +L E+N+MKTLQ ++ V+ + + F+A G LKS + K P
Sbjct: 227 VEAFLAEANVMKTLQHDKLVKLHAVVTKEPIYIITEFMA---KGSLLDFLKSDEGSKQPL 283
Query: 411 KKLIDLYEQVV--LELIELR 428
KLID Q+ + IE R
Sbjct: 284 PKLIDFSAQIAEGMAFIEQR 303
>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg-
1009247
Length = 270
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 354 IQQYLKESNLMKTLQ---CLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPE 410
++ +L E+N+MKTLQ ++ V+ + + F+A G LKS + K P
Sbjct: 54 VEAFLAEANVMKTLQHDKLVKLHAVVTKEPIYIITEFMA---KGSLLDFLKSDEGSKQPL 110
Query: 411 KKLIDLYEQVV--LELIELR 428
KLID Q+ + IE R
Sbjct: 111 PKLIDFSAQIAEGMAFIEQR 130
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 354 IQQYLKESNLMKTLQ---CLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPE 410
++ +L E+N+MKTLQ ++ V+ + + F+A G LKS + K P
Sbjct: 221 VEAFLAEANVMKTLQHDKLVKLHAVVTKEPIYIITEFMA---KGSLLDFLKSDEGSKQPL 277
Query: 411 KKLIDLYEQVV--LELIELR 428
KLID Q+ + IE R
Sbjct: 278 PKLIDFSAQIAEGMAFIEQR 297
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 54/140 (38%), Gaps = 18/140 (12%)
Query: 154 MSLAYSRDSEMLASGSQSGKVKIWKIATGQCLR-KLEKAHSLGVTCIQFS--RDNSQILT 210
+ A+ + +LAS S GKV IWK G+ + + HS V +Q++ +L
Sbjct: 59 VDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLV 118
Query: 211 ASFDTYVRIHGLKSGKMLKE--FRGHSSFVNDITF-------------TADGHSVLSASS 255
AS D V + K H+ VN ++ T + ++ +
Sbjct: 119 ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA 178
Query: 256 DGTVKMWNLKTTECTSTFKS 275
D VK+W + T +S
Sbjct: 179 DNLVKIWKYNSDAQTYVLES 198
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 19/130 (14%)
Query: 153 VMSLAYSRDSE-MLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTA 211
V L+++ SE +LA+GS V +W + + ++H + +Q+S N IL A
Sbjct: 284 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL-A 342
Query: 212 SFDTYVRIHGLKSGKMLKE----------------FRGHSSFVNDITFTADGHSVL-SAS 254
S T R+H K+ +E GH++ ++D ++ + ++ S S
Sbjct: 343 SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVS 402
Query: 255 SDGTVKMWNL 264
D +++W +
Sbjct: 403 EDNIMQVWQM 412
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 54/140 (38%), Gaps = 18/140 (12%)
Query: 154 MSLAYSRDSEMLASGSQSGKVKIWKIATGQCLR-KLEKAHSLGVTCIQFSRD--NSQILT 210
+ A+ + +LAS S GKV IWK G+ + + HS V +Q++ +L
Sbjct: 61 VDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLV 120
Query: 211 ASFDTYVRIHGLKSGKMLKE--FRGHSSFVNDITF-------------TADGHSVLSASS 255
AS D V + K H+ VN ++ T + ++ +
Sbjct: 121 ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA 180
Query: 256 DGTVKMWNLKTTECTSTFKS 275
D VK+W + T +S
Sbjct: 181 DNLVKIWKYNSDAQTYVLES 200
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 25/114 (21%)
Query: 163 EMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHG- 221
+++A+G + G+++I+KI + L L SL NS + S D + G
Sbjct: 231 QLIATGCKDGRIRIFKIT--EKLSPLASEESLT---------NSNMFDNSADVDMDAQGR 279
Query: 222 ----------LKSG---KMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMW 262
L+S ++L E H+ V +++ G + SA DG V++W
Sbjct: 280 SDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 25/114 (21%)
Query: 163 EMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHG- 221
+++A+G + G+++I+KI + L L SL NS + S D + G
Sbjct: 229 QLIATGCKDGRIRIFKIT--EKLSPLASEESLT---------NSNMFDNSADVDMDAQGR 277
Query: 222 ----------LKSG---KMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMW 262
L+S ++L E H+ V +++ G + SA DG V++W
Sbjct: 278 SDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 331
>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
pdb|2OG8|B Chain B, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
Length = 265
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 357 YLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDL 416
+L E+NLMK LQ + ++ T + + + NG LK+ +KL KL+D+
Sbjct: 50 FLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDM 109
Query: 417 YEQVV--LELIEL-----RELGAARSLLRQT 440
Q+ + IE R+L AA L+ T
Sbjct: 110 AAQIAEGMAFIEERNYIHRDLRAANILVSDT 140
>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck
In Complex With Non-selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 357 YLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDL 416
+L E+NLMK LQ + ++ T + + + NG LK+ +KL KL+D+
Sbjct: 55 FLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDM 114
Query: 417 YEQVV--LELIEL-----RELGAARSLLRQT 440
Q+ + IE R+L AA L+ T
Sbjct: 115 AAQIAEGMAFIEERNYIHRDLRAANILVSDT 145
>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule
Inhibitor
Length = 288
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 357 YLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDL 416
+L E+NLMK LQ + ++ T + + + NG LK+ +KL KL+D+
Sbjct: 64 FLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDM 123
Query: 417 YEQVV--LELIEL-----RELGAARSLLRQT 440
Q+ + IE R+L AA L+ T
Sbjct: 124 AAQIAEGMAFIEERNYIHRDLRAANILVSDT 154
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/56 (19%), Positives = 31/56 (55%)
Query: 252 SASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVI 307
++S D TVK+W+L+ + +++ + + VN+ + P ++ + ++ N + +
Sbjct: 221 TSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRV 276
>pdb|2PL0|A Chain A, Lck Bound To Imatinib
Length = 289
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 357 YLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDL 416
+L E+NLMK LQ + ++ T + + + NG LK+ +KL KL+D+
Sbjct: 65 FLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDM 124
Query: 417 YEQVV--LELIEL-----RELGAARSLLRQT 440
Q+ + IE R+L AA L+ T
Sbjct: 125 AAQIAEGMAFIEERNYIHRDLRAANILVSDT 155
>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule
W259
Length = 287
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 357 YLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDL 416
+L E+NLMK LQ + ++ T + + + NG LK+ +KL KL+D+
Sbjct: 63 FLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDM 122
Query: 417 YEQVV--LELIEL-----RELGAARSLLRQT 440
Q+ + IE R+L AA L+ T
Sbjct: 123 AAQIAEGMAFIEERNYIHRDLRAANILVSDT 153
>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43
Bound To Lck
Length = 273
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 357 YLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDL 416
+L E+NLMK LQ + ++ T + + + NG LK+ +KL KL+D+
Sbjct: 57 FLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDM 116
Query: 417 YEQVV--LELIEL-----RELGAARSLLRQT 440
Q+ + IE R+L AA L+ T
Sbjct: 117 AAQIAEGMAFIEERNYIHRDLRAANILVSDT 147
>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1
Bound To Lck
Length = 272
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 357 YLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDL 416
+L E+NLMK LQ + ++ T + + + NG LK+ +KL KL+D+
Sbjct: 56 FLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDM 115
Query: 417 YEQVV--LELIEL-----RELGAARSLLRQT 440
Q+ + IE R+L AA L+ T
Sbjct: 116 AAQIAEGMAFIEERNYIHRDLRAANILVSDT 146
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/56 (19%), Positives = 31/56 (55%)
Query: 252 SASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVI 307
++S D TVK+W+L+ + +++ + + VN+ + P ++ + ++ N + +
Sbjct: 222 TSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRV 277
>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase
Domain Of Human Lck, (Auto-Phosphorylated On Tyr394)
pdb|2ZM4|A Chain A, Crystal Structure Of Imidazo Quinoxaline 1 Bound To The
Kinase Domain Of Human Lck, Activated Form (Auto-
Phosphorylated On Tyr394)
pdb|2ZYB|A Chain A, Crystal Structure Of Phenylimidazo Pyrazin 2 Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC1|A Chain A, Crystal Structure Of Pyrazin Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC2|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC3|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC4|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC5|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC8|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACJ|A Chain A, Crystal Structure Of Imidazo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACK|A Chain A, Crystal Structure Of Pyrrolo Pyrazine Derivative Bound To
The Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD4|A Chain A, Crystal Structure Of Methoxy Benzofuran Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AD5|A Chain A, Crystal Structure Of Triazolone Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD6|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
Length = 285
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 357 YLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDL 416
+L E+NLMK LQ + ++ T + + + NG LK+ +KL KL+D+
Sbjct: 61 FLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDM 120
Query: 417 YEQVV--LELIEL-----RELGAARSLLRQT 440
Q+ + IE R+L AA L+ T
Sbjct: 121 AAQIAEGMAFIEERNYIHRDLRAANILVSDT 151
>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck
pdb|2OF4|A Chain A, Crystal Structure Of Furanopyrimidine 1 Bound To Lck
Length = 271
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 357 YLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDL 416
+L E+NLMK LQ + ++ T + + + NG LK+ +KL KL+D+
Sbjct: 55 FLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDM 114
Query: 417 YEQVV--LELIEL-----RELGAARSLLRQT 440
Q+ + IE R+L AA L+ T
Sbjct: 115 AAQIAEGMAFIEERNYIHRDLRAANILVSDT 145
>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b
pdb|3BYU|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Reverse
Amide 23
Length = 277
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 357 YLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDL 416
+L E+NLMK LQ + ++ T + + + NG LK+ +KL KL+D+
Sbjct: 61 FLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDM 120
Query: 417 YEQVV--LELIEL-----RELGAARSLLRQT 440
Q+ + IE R+L AA L+ T
Sbjct: 121 AAQIAEGMAFIEERNYIHRDLRAANILVSDT 151
>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
pdb|1QPJ|A Chain A, Crystal Structure Of The Lymphocyte-Specific Kinase Lck In
Complex With Staurosporine.
pdb|1QPC|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 357 YLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDL 416
+L E+NLMK LQ + ++ T + + + NG LK+ +KL KL+D+
Sbjct: 55 FLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDM 114
Query: 417 YEQVV--LELIEL-----RELGAARSLLRQT 440
Q+ + IE R+L AA L+ T
Sbjct: 115 AAQIAEGMAFIEERNYIHRDLRAANILVSDT 145
>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck),
Activated Form (Auto-Phosphorylated On Tyr394)
pdb|3BYO|A Chain A, X-Ray Co-Crystal Structure Of 2-Amino-6-Phenylpyrimido[5',
4':5,6]pyrimido[1,2-A]benzimidazol-5(6h)-One 25 Bound To
Lck
Length = 271
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 357 YLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDL 416
+L E+NLMK LQ + ++ T + + + NG LK+ +KL KL+D+
Sbjct: 55 FLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDM 114
Query: 417 YEQVV--LELIEL-----RELGAARSLLRQT 440
Q+ + IE R+L AA L+ T
Sbjct: 115 AAQIAEGMAFIEERNYIHRDLRAANILVSDT 145
>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine
Length = 267
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 357 YLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDL 416
+L E+NLMK LQ + ++ T + + + NG LK+ +KL KL+D+
Sbjct: 51 FLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDM 110
Query: 417 YEQVV--LELIELR 428
Q+ + IE R
Sbjct: 111 AAQIAEGMAFIEER 124
>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|2OFV|B Chain B, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|3B2W|A Chain A, Crystal Structure Of Pyrimidine Amide 11 Bound To Lck
Length = 277
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 357 YLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDL 416
+L E+NLMK LQ + ++ T + + + NG LK+ +KL KL+D+
Sbjct: 60 FLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDM 119
Query: 417 YEQVV--LELIEL-----RELGAARSLLRQT 440
Q+ + IE R+L AA L+ T
Sbjct: 120 AAQIAEGMAFIEERNYIHRDLRAANILVSDT 150
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 250 VLSASSDGTVKMWNLKTTECTSTFKSLGASDIA--VNSIHLLPKNTEHFVVCNKTNTVVI 307
+++ S G +K+WNLK + S D + V I ++P N + F V +K +++
Sbjct: 79 LITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIP-NFDAFAVSSKDGQIIV 137
Query: 308 MNMQ 311
+ +
Sbjct: 138 LKVN 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,039,085
Number of Sequences: 62578
Number of extensions: 558286
Number of successful extensions: 2439
Number of sequences better than 100.0: 128
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 1467
Number of HSP's gapped (non-prelim): 431
length of query: 482
length of database: 14,973,337
effective HSP length: 103
effective length of query: 379
effective length of database: 8,527,803
effective search space: 3232037337
effective search space used: 3232037337
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)