Query psy8448
Match_columns 482
No_of_seqs 737 out of 4073
Neff 11.4
Searched_HMMs 29240
Date Fri Aug 16 19:07:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8448.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8448hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 1.4E-48 4.7E-53 369.5 40.6 287 93-482 101-407 (410)
2 1got_B GT-beta; complex (GTP-b 100.0 1.6E-47 5.3E-52 353.3 41.8 286 94-482 49-339 (340)
3 3ow8_A WD repeat-containing pr 100.0 1.3E-47 4.4E-52 350.2 38.1 286 95-482 27-317 (321)
4 2pbi_B Guanine nucleotide-bind 100.0 1.2E-46 4.2E-51 348.9 40.3 287 94-482 58-353 (354)
5 2ynn_A Coatomer subunit beta'; 100.0 1.2E-45 4E-50 335.2 38.9 285 95-481 8-298 (304)
6 1nr0_A Actin interacting prote 100.0 2.9E-45 9.9E-50 364.6 43.5 368 64-482 27-563 (611)
7 4ery_A WD repeat-containing pr 100.0 6.5E-45 2.2E-49 332.0 41.1 291 92-482 15-308 (312)
8 4gqb_B Methylosome protein 50; 100.0 5.4E-46 1.8E-50 341.9 32.5 290 98-482 28-327 (344)
9 3frx_A Guanine nucleotide-bind 100.0 1.3E-44 4.3E-49 330.6 41.3 296 93-482 10-313 (319)
10 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.8E-45 1.3E-49 337.9 37.7 247 96-354 11-281 (345)
11 4g56_B MGC81050 protein; prote 100.0 8.6E-46 2.9E-50 343.4 31.9 288 97-482 39-339 (357)
12 3iz6_a 40S ribosomal protein R 100.0 1.8E-45 6.1E-50 344.8 30.5 293 93-482 59-371 (380)
13 1nr0_A Actin interacting prote 100.0 1.6E-44 5.3E-49 359.3 36.3 388 36-482 62-607 (611)
14 1erj_A Transcriptional repress 100.0 3E-43 1E-47 331.2 39.5 290 98-482 62-385 (393)
15 2xzm_R RACK1; ribosome, transl 100.0 5.7E-43 2E-47 323.3 40.2 300 93-482 14-336 (343)
16 2hes_X YDR267CP; beta-propelle 100.0 9.1E-43 3.1E-47 319.9 38.0 244 95-353 9-277 (330)
17 2ymu_A WD-40 repeat protein; u 100.0 6.6E-42 2.3E-46 339.4 43.4 346 63-482 229-576 (577)
18 1gxr_A ESG1, transducin-like e 100.0 1.4E-41 4.8E-46 313.4 41.4 284 97-482 48-333 (337)
19 3ow8_A WD repeat-containing pr 100.0 1.3E-41 4.3E-46 310.6 36.9 264 73-355 56-320 (321)
20 4aow_A Guanine nucleotide-bind 100.0 8E-41 2.8E-45 308.9 41.6 297 94-482 32-333 (340)
21 1vyh_C Platelet-activating fac 100.0 2.6E-41 8.8E-46 319.6 37.5 269 65-354 118-409 (410)
22 4gqb_B Methylosome protein 50; 100.0 3.8E-41 1.3E-45 309.6 37.6 247 97-355 79-330 (344)
23 3zwl_B Eukaryotic translation 100.0 9.1E-41 3.1E-45 312.0 40.7 297 94-482 26-342 (369)
24 2ymu_A WD-40 repeat protein; u 100.0 4.3E-40 1.5E-44 326.4 42.4 345 64-482 189-535 (577)
25 2ynn_A Coatomer subunit beta'; 100.0 6.1E-41 2.1E-45 304.1 33.2 245 144-482 7-255 (304)
26 1got_B GT-beta; complex (GTP-b 100.0 6.9E-41 2.3E-45 308.8 33.6 274 64-353 64-340 (340)
27 3dm0_A Maltose-binding peripla 100.0 1.7E-40 5.9E-45 335.7 38.5 248 94-354 376-630 (694)
28 4g56_B MGC81050 protein; prote 100.0 1.3E-40 4.4E-45 308.7 34.4 271 73-356 68-343 (357)
29 1k8k_C P40, ARP2/3 complex 41 100.0 2.6E-40 8.9E-45 309.4 36.1 244 96-355 4-273 (372)
30 3k26_A Polycomb protein EED; W 100.0 3.4E-41 1.1E-45 314.6 29.9 298 91-482 9-362 (366)
31 1r5m_A SIR4-interacting protei 100.0 3.2E-41 1.1E-45 321.3 30.2 333 63-482 53-421 (425)
32 3i2n_A WD repeat-containing pr 100.0 7.3E-41 2.5E-45 311.3 31.2 311 90-482 8-349 (357)
33 3gre_A Serine/threonine-protei 100.0 8.7E-41 3E-45 319.7 32.2 332 90-482 53-436 (437)
34 1sq9_A Antiviral protein SKI8; 100.0 1.1E-40 3.9E-45 314.8 32.3 256 93-355 9-321 (397)
35 3sfz_A APAF-1, apoptotic pepti 100.0 1.5E-40 5.2E-45 358.0 35.2 363 62-482 622-1154(1249)
36 3sfz_A APAF-1, apoptotic pepti 100.0 8.6E-40 2.9E-44 352.2 40.4 363 92-482 607-1112(1249)
37 2pbi_B Guanine nucleotide-bind 100.0 5.8E-40 2E-44 304.0 33.5 277 64-353 73-354 (354)
38 2pm9_A Protein WEB1, protein t 100.0 1.8E-40 6.1E-45 315.4 30.8 270 74-355 44-336 (416)
39 2j04_B YDR362CP, TAU91; beta p 100.0 3.7E-41 1.3E-45 324.9 25.5 323 98-482 131-513 (524)
40 3ei3_B DNA damage-binding prot 100.0 6.7E-40 2.3E-44 307.9 33.2 284 95-482 68-378 (383)
41 3frx_A Guanine nucleotide-bind 100.0 8.2E-39 2.8E-43 292.1 38.3 266 73-354 38-315 (319)
42 3vl1_A 26S proteasome regulato 100.0 1.7E-39 5.7E-44 309.2 34.2 332 102-482 58-415 (420)
43 4e54_B DNA damage-binding prot 100.0 3.3E-40 1.1E-44 315.0 28.7 302 96-482 115-426 (435)
44 4aez_A CDC20, WD repeat-contai 100.0 2.8E-39 9.5E-44 305.4 34.7 280 98-482 89-376 (401)
45 2pm7_B Protein transport prote 100.0 8.7E-39 3E-43 288.9 35.9 251 95-355 4-284 (297)
46 3fm0_A Protein CIAO1; WDR39,SG 100.0 8.4E-39 2.9E-43 295.4 35.4 281 64-356 25-335 (345)
47 4gga_A P55CDC, cell division c 100.0 2.4E-38 8.4E-43 300.7 39.5 279 101-482 106-391 (420)
48 3odt_A Protein DOA1; ubiquitin 100.0 2.5E-38 8.7E-43 288.5 37.5 276 94-482 12-292 (313)
49 3dwl_C Actin-related protein 2 100.0 1.6E-40 5.5E-45 311.5 23.5 242 98-354 9-279 (377)
50 2pm9_A Protein WEB1, protein t 100.0 3.3E-40 1.1E-44 313.6 24.8 288 98-482 10-333 (416)
51 1r5m_A SIR4-interacting protei 100.0 8.9E-39 3E-43 304.4 32.7 286 98-482 43-357 (425)
52 4h5i_A Guanine nucleotide-exch 100.0 1.1E-39 3.7E-44 303.2 25.4 290 100-482 14-339 (365)
53 2hes_X YDR267CP; beta-propelle 100.0 4.6E-38 1.6E-42 288.6 35.1 273 73-355 32-327 (330)
54 1erj_A Transcriptional repress 100.0 1.9E-37 6.6E-42 291.6 39.1 240 99-355 122-388 (393)
55 2oaj_A Protein SNI1; WD40 repe 100.0 3.1E-38 1.1E-42 325.1 36.1 247 94-354 11-310 (902)
56 3iz6_a 40S ribosomal protein R 100.0 2.2E-39 7.6E-44 303.4 24.7 285 64-355 75-374 (380)
57 1pgu_A Actin interacting prote 100.0 8.3E-38 2.8E-42 312.4 37.5 341 74-482 38-398 (615)
58 4ggc_A P55CDC, cell division c 100.0 1.8E-37 6.2E-42 283.5 35.4 277 103-482 28-311 (318)
59 4ery_A WD repeat-containing pr 100.0 6.8E-37 2.3E-41 278.9 39.0 270 65-354 33-310 (312)
60 4a11_B DNA excision repair pro 100.0 1.9E-37 6.6E-42 293.6 35.3 298 94-482 37-361 (408)
61 2oaj_A Protein SNI1; WD40 repe 100.0 1.5E-38 5E-43 327.5 28.9 212 74-302 38-297 (902)
62 1gxr_A ESG1, transducin-like e 100.0 5.5E-38 1.9E-42 289.4 29.4 278 99-482 8-292 (337)
63 3dw8_B Serine/threonine-protei 100.0 1.3E-37 4.5E-42 298.6 33.2 252 98-355 26-372 (447)
64 3mkq_A Coatomer beta'-subunit; 100.0 1.8E-37 6.1E-42 320.2 35.8 246 94-354 7-257 (814)
65 2xzm_R RACK1; ribosome, transl 100.0 1.1E-36 3.9E-41 281.0 37.5 273 66-354 38-338 (343)
66 3bg1_A Protein SEC13 homolog; 100.0 2.7E-38 9.2E-43 288.3 25.6 254 92-355 5-292 (316)
67 1yfq_A Cell cycle arrest prote 100.0 1.3E-37 4.4E-42 287.7 29.2 245 95-352 6-278 (342)
68 2pm7_B Protein transport prote 100.0 7.9E-37 2.7E-41 276.1 32.8 247 146-482 5-281 (297)
69 3f3f_A Nucleoporin SEH1; struc 100.0 2.7E-37 9.2E-42 286.0 30.2 297 93-482 4-333 (351)
70 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4E-36 1.4E-40 287.9 39.2 297 73-482 137-438 (445)
71 1pgu_A Actin interacting prote 100.0 7.7E-37 2.6E-41 305.4 34.9 310 97-482 15-362 (615)
72 3bg1_A Protein SEC13 homolog; 100.0 1.8E-37 6.2E-42 282.8 26.5 249 146-482 9-289 (316)
73 3dm0_A Maltose-binding peripla 100.0 3.7E-36 1.3E-40 304.0 38.3 269 73-355 403-692 (694)
74 4aow_A Guanine nucleotide-bind 100.0 3.4E-36 1.1E-40 277.9 34.3 267 73-353 59-334 (340)
75 3v7d_B Cell division control p 100.0 1.3E-35 4.3E-40 286.2 38.7 238 94-354 115-379 (464)
76 1p22_A F-BOX/WD-repeat protein 100.0 5.1E-36 1.8E-40 286.1 35.5 231 97-355 130-364 (435)
77 3v7d_B Cell division control p 100.0 1.1E-35 3.9E-40 286.5 38.1 250 73-350 140-415 (464)
78 3mmy_A MRNA export factor; mRN 100.0 4.4E-36 1.5E-40 280.1 34.1 287 94-481 33-341 (368)
79 3mkq_A Coatomer beta'-subunit; 100.0 1E-35 3.5E-40 307.1 38.9 270 65-355 23-301 (814)
80 3jrp_A Fusion protein of prote 100.0 8.5E-36 2.9E-40 279.4 33.8 255 94-355 5-286 (379)
81 1k8k_C P40, ARP2/3 complex 41 100.0 2.9E-35 1E-39 275.1 36.0 278 65-356 18-361 (372)
82 3k26_A Polycomb protein EED; W 100.0 8.9E-36 3E-40 277.9 30.2 268 73-355 42-365 (366)
83 3zwl_B Eukaryotic translation 100.0 2.1E-34 7.3E-39 268.8 38.8 270 65-357 42-347 (369)
84 2j04_A TAU60, YPL007P, hypothe 100.0 1.3E-35 4.6E-40 278.7 29.2 313 57-475 17-350 (588)
85 2j04_B YDR362CP, TAU91; beta p 100.0 3.9E-36 1.3E-40 289.9 26.2 276 73-355 181-516 (524)
86 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.7E-34 5.9E-39 276.5 37.5 232 94-353 112-345 (445)
87 3vl1_A 26S proteasome regulato 100.0 8.1E-36 2.8E-40 283.7 26.8 263 74-356 77-365 (420)
88 4aez_A CDC20, WD repeat-contai 100.0 2.7E-34 9.2E-39 271.2 35.5 263 72-355 110-379 (401)
89 1sq9_A Antiviral protein SKI8; 100.0 9.2E-35 3.1E-39 274.3 31.9 273 73-354 34-393 (397)
90 3ei3_B DNA damage-binding prot 100.0 1.4E-34 4.8E-39 271.6 32.4 276 63-355 81-381 (383)
91 2aq5_A Coronin-1A; WD40 repeat 100.0 3E-35 1E-39 277.9 27.9 242 102-353 36-296 (402)
92 3dwl_C Actin-related protein 2 100.0 1.1E-35 3.9E-40 278.5 24.4 276 65-354 21-377 (377)
93 3i2n_A WD repeat-containing pr 100.0 7.2E-35 2.5E-39 270.8 29.1 265 74-355 43-352 (357)
94 3jrp_A Fusion protein of prote 100.0 3.6E-34 1.2E-38 268.3 31.4 250 145-482 6-283 (379)
95 4gga_A P55CDC, cell division c 100.0 1.1E-33 3.6E-38 268.8 35.0 262 73-355 123-394 (420)
96 2aq5_A Coronin-1A; WD40 repeat 100.0 1.5E-34 5E-39 273.2 28.8 276 73-355 55-341 (402)
97 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.4E-34 1.5E-38 273.9 32.3 250 100-354 4-337 (450)
98 3gre_A Serine/threonine-protei 100.0 2.7E-35 9.1E-40 281.6 23.2 288 64-353 72-437 (437)
99 2xyi_A Probable histone-bindin 100.0 5.8E-34 2E-38 271.2 31.9 258 94-358 122-412 (430)
100 3jro_A Fusion protein of prote 100.0 1.1E-34 3.9E-39 294.7 28.5 255 94-355 3-284 (753)
101 4h5i_A Guanine nucleotide-exch 100.0 2.4E-34 8.4E-39 267.2 26.9 252 96-355 69-342 (365)
102 2j04_A TAU60, YPL007P, hypothe 100.0 3.6E-35 1.2E-39 275.8 20.9 262 98-482 13-293 (588)
103 4e54_B DNA damage-binding prot 100.0 6.4E-35 2.2E-39 278.4 23.0 268 73-355 140-429 (435)
104 3lrv_A PRE-mRNA-splicing facto 100.0 3.5E-34 1.2E-38 264.5 26.7 231 107-354 43-290 (343)
105 2xyi_A Probable histone-bindin 100.0 9.7E-34 3.3E-38 269.7 29.9 256 146-482 124-406 (430)
106 3odt_A Protein DOA1; ubiquitin 100.0 1.3E-32 4.5E-37 250.6 35.8 256 73-355 37-295 (313)
107 4a11_B DNA excision repair pro 100.0 1E-32 3.5E-37 261.1 35.8 278 64-355 52-364 (408)
108 3dw8_B Serine/threonine-protei 100.0 1.1E-33 3.6E-38 271.4 26.5 273 73-352 48-442 (447)
109 3vu4_A KMHSV2; beta-propeller 100.0 1.4E-32 4.9E-37 254.5 32.7 233 97-355 16-270 (355)
110 3bws_A Protein LP49; two-domai 100.0 1.8E-32 6.2E-37 261.7 34.2 233 100-345 122-364 (433)
111 4ggc_A P55CDC, cell division c 100.0 3.4E-32 1.2E-36 248.5 33.1 262 73-355 43-314 (318)
112 3jro_A Fusion protein of prote 100.0 9.9E-33 3.4E-37 280.5 29.9 250 145-482 4-281 (753)
113 1p22_A F-BOX/WD-repeat protein 100.0 8E-32 2.7E-36 257.1 32.1 251 73-356 151-414 (435)
114 4gq1_A NUP37; propeller, trans 100.0 1.3E-32 4.4E-37 258.5 22.6 239 153-480 92-384 (393)
115 1yfq_A Cell cycle arrest prote 100.0 1.7E-31 6E-36 246.5 27.7 257 73-350 31-318 (342)
116 4gq1_A NUP37; propeller, trans 100.0 4.3E-32 1.5E-36 255.0 23.8 240 101-350 90-384 (393)
117 1l0q_A Surface layer protein; 100.0 2.9E-30 9.8E-35 243.0 34.7 221 113-353 3-230 (391)
118 2vdu_B TRNA (guanine-N(7)-)-me 100.0 8.5E-31 2.9E-35 251.1 29.9 245 98-355 100-390 (450)
119 3lrv_A PRE-mRNA-splicing facto 100.0 3.4E-31 1.2E-35 244.4 25.2 261 73-352 56-329 (343)
120 3mmy_A MRNA export factor; mRN 100.0 4.2E-30 1.4E-34 239.6 29.8 255 145-482 34-300 (368)
121 1l0q_A Surface layer protein; 100.0 5.2E-29 1.8E-33 234.4 37.4 254 74-354 11-273 (391)
122 2w18_A PALB2, fancn, partner a 100.0 9.1E-30 3.1E-34 224.7 29.6 278 102-482 41-353 (356)
123 3f3f_A Nucleoporin SEH1; struc 100.0 4.1E-30 1.4E-34 237.6 28.1 274 74-355 32-336 (351)
124 3bws_A Protein LP49; two-domai 100.0 2.9E-28 1E-32 232.5 35.4 261 75-355 144-431 (433)
125 3vu4_A KMHSV2; beta-propeller 100.0 3.8E-29 1.3E-33 231.5 25.3 228 147-482 16-267 (355)
126 2w18_A PALB2, fancn, partner a 100.0 2.9E-28 9.7E-33 215.2 26.2 269 70-354 58-355 (356)
127 2hqs_A Protein TOLB; TOLB, PAL 100.0 5.8E-27 2E-31 221.2 27.6 272 55-350 68-381 (415)
128 2hqs_A Protein TOLB; TOLB, PAL 100.0 2.7E-27 9.3E-32 223.5 24.1 234 100-350 62-338 (415)
129 1nir_A Nitrite reductase; hemo 100.0 8.7E-26 3E-30 219.6 33.5 259 74-352 158-454 (543)
130 1nir_A Nitrite reductase; hemo 99.9 1.8E-25 6.1E-30 217.4 29.3 234 107-354 144-400 (543)
131 3vgz_A Uncharacterized protein 99.9 1.2E-24 4.2E-29 201.4 33.0 239 99-351 39-298 (353)
132 2ecf_A Dipeptidyl peptidase IV 99.9 6E-26 2.1E-30 231.5 26.2 248 100-353 36-364 (741)
133 1ri6_A Putative isomerase YBHE 99.9 7.4E-25 2.5E-29 202.0 28.1 231 114-354 7-260 (343)
134 3u4y_A Uncharacterized protein 99.9 3.4E-24 1.2E-28 196.7 31.7 232 107-353 4-249 (331)
135 2ojh_A Uncharacterized protein 99.9 9E-25 3.1E-29 196.8 26.1 209 118-346 18-237 (297)
136 1xfd_A DIP, dipeptidyl aminope 99.9 2.1E-24 7.1E-29 219.6 29.3 262 74-353 36-390 (723)
137 2ecf_A Dipeptidyl peptidase IV 99.9 1.7E-24 5.6E-29 220.9 27.8 234 102-353 110-410 (741)
138 2z3z_A Dipeptidyl aminopeptida 99.9 2.7E-24 9.1E-29 218.1 28.4 229 101-347 82-377 (706)
139 1xfd_A DIP, dipeptidyl aminope 99.9 5.5E-25 1.9E-29 223.8 21.3 240 102-352 18-338 (723)
140 1ri6_A Putative isomerase YBHE 99.9 1.3E-23 4.4E-28 193.6 28.4 265 74-354 14-306 (343)
141 1pby_B Quinohemoprotein amine 99.9 9.5E-24 3.2E-28 194.0 25.1 222 113-352 2-265 (337)
142 2ojh_A Uncharacterized protein 99.9 4.1E-24 1.4E-28 192.5 22.1 253 74-347 21-293 (297)
143 1k32_A Tricorn protease; prote 99.9 1.2E-23 4.2E-28 221.7 27.9 269 61-350 58-403 (1045)
144 1k32_A Tricorn protease; prote 99.9 4.8E-23 1.7E-27 217.1 30.5 243 98-355 243-501 (1045)
145 3u4y_A Uncharacterized protein 99.9 1.4E-22 4.7E-27 185.9 29.5 262 74-355 19-303 (331)
146 3hfq_A Uncharacterized protein 99.9 4.5E-22 1.5E-26 183.7 29.8 225 121-354 15-269 (347)
147 2oit_A Nucleoporin 214KDA; NH2 99.9 4.9E-23 1.7E-27 194.9 23.4 251 100-353 36-330 (434)
148 3vgz_A Uncharacterized protein 99.9 1.3E-21 4.4E-26 181.0 30.6 237 101-347 89-335 (353)
149 2z3z_A Dipeptidyl aminopeptida 99.9 2.4E-22 8.1E-27 203.8 26.7 277 64-354 90-433 (706)
150 3o4h_A Acylamino-acid-releasin 99.9 2.1E-22 7.1E-27 199.4 23.8 233 99-353 20-273 (582)
151 1pby_B Quinohemoprotein amine 99.9 9.5E-22 3.3E-26 180.6 26.3 260 74-354 10-308 (337)
152 3scy_A Hypothetical bacterial 99.9 9.1E-21 3.1E-25 176.0 32.3 242 99-353 48-334 (361)
153 3hfq_A Uncharacterized protein 99.9 2.2E-21 7.5E-26 179.1 27.7 247 98-354 37-315 (347)
154 1jmx_B Amine dehydrogenase; ox 99.9 1.7E-21 5.9E-26 179.9 25.1 232 105-354 4-323 (349)
155 1z68_A Fibroblast activation p 99.9 4.9E-22 1.7E-26 201.9 20.1 261 74-353 35-388 (719)
156 3pe7_A Oligogalacturonate lyas 99.9 5.2E-21 1.8E-25 179.5 25.3 240 98-350 28-323 (388)
157 2oit_A Nucleoporin 214KDA; NH2 99.9 3.7E-20 1.3E-24 175.2 29.7 211 98-310 90-331 (434)
158 1z68_A Fibroblast activation p 99.9 1E-21 3.5E-26 199.6 18.8 238 105-352 20-340 (719)
159 3scy_A Hypothetical bacterial 99.9 2.1E-19 7.3E-24 166.7 32.6 229 112-354 13-289 (361)
160 1jof_A Carboxy-CIS,CIS-muconat 99.9 1.6E-19 5.5E-24 167.6 28.2 233 114-354 4-289 (365)
161 1jof_A Carboxy-CIS,CIS-muconat 99.9 7.8E-20 2.7E-24 169.7 25.7 245 99-355 38-340 (365)
162 1jmx_B Amine dehydrogenase; ox 99.9 3.8E-20 1.3E-24 170.8 23.5 161 155-320 4-184 (349)
163 3o4h_A Acylamino-acid-releasin 99.9 2.4E-20 8.2E-25 184.5 20.6 187 150-350 21-221 (582)
164 1q7f_A NHL, brain tumor CG1071 99.9 3.7E-18 1.3E-22 152.8 32.8 247 98-354 27-278 (286)
165 3fvz_A Peptidyl-glycine alpha- 99.8 4E-18 1.4E-22 155.7 29.9 245 100-355 23-321 (329)
166 4a5s_A Dipeptidyl peptidase 4 99.8 1.3E-18 4.4E-23 176.8 28.2 263 64-345 25-382 (740)
167 3c5m_A Oligogalacturonate lyas 99.8 8E-20 2.7E-24 171.8 18.0 226 102-344 37-301 (396)
168 3pe7_A Oligogalacturonate lyas 99.8 9.1E-19 3.1E-23 164.2 24.2 279 61-354 41-380 (388)
169 4a5s_A Dipeptidyl peptidase 4 99.8 1.7E-18 5.9E-23 175.9 27.4 240 102-352 18-347 (740)
170 3azo_A Aminopeptidase; POP fam 99.8 1E-18 3.5E-23 175.7 24.8 244 96-353 19-320 (662)
171 3azo_A Aminopeptidase; POP fam 99.8 1.5E-17 5E-22 167.4 28.3 234 105-352 81-363 (662)
172 3fvz_A Peptidyl-glycine alpha- 99.8 1.7E-17 5.9E-22 151.5 25.9 183 151-335 24-250 (329)
173 1q7f_A NHL, brain tumor CG1071 99.8 1.2E-16 4E-21 143.0 30.5 197 150-352 29-234 (286)
174 2gop_A Trilobed protease; beta 99.8 6.5E-17 2.2E-21 149.0 29.1 217 101-352 15-288 (347)
175 2oiz_A Aromatic amine dehydrog 99.8 2.1E-17 7.3E-22 152.5 22.6 221 111-345 14-273 (361)
176 2dg1_A DRP35, lactonase; beta 99.8 3.6E-17 1.2E-21 149.9 23.8 235 101-352 6-259 (333)
177 3e5z_A Putative gluconolactona 99.8 3.3E-16 1.1E-20 140.8 29.1 231 98-350 25-281 (296)
178 2xdw_A Prolyl endopeptidase; a 99.8 2E-16 6.7E-21 160.1 30.3 292 47-355 63-413 (710)
179 2bkl_A Prolyl endopeptidase; m 99.8 9.2E-17 3.2E-21 162.0 26.5 293 45-354 57-395 (695)
180 2oiz_A Aromatic amine dehydrog 99.8 1.3E-16 4.6E-21 147.2 25.0 258 74-350 30-328 (361)
181 3c5m_A Oligogalacturonate lyas 99.8 2.1E-17 7.3E-22 155.2 19.4 239 103-352 83-378 (396)
182 2z2n_A Virginiamycin B lyase; 99.8 1.8E-14 6.1E-19 129.6 37.1 238 98-352 12-251 (299)
183 2dg1_A DRP35, lactonase; beta 99.8 3.3E-15 1.1E-19 136.7 32.4 239 98-347 42-301 (333)
184 1rwi_B Serine/threonine-protei 99.7 1E-15 3.6E-20 135.6 26.4 238 102-355 25-263 (270)
185 2xdw_A Prolyl endopeptidase; a 99.7 7.5E-16 2.6E-20 155.8 27.5 234 110-352 81-362 (710)
186 2gop_A Trilobed protease; beta 99.7 1.4E-15 4.8E-20 140.0 25.5 220 101-353 59-328 (347)
187 3no2_A Uncharacterized protein 99.7 3.7E-15 1.3E-19 131.7 26.9 217 111-344 4-231 (276)
188 3dsm_A Uncharacterized protein 99.7 1.7E-14 5.7E-19 131.4 29.6 214 120-350 15-247 (328)
189 3e5z_A Putative gluconolactona 99.7 7.7E-15 2.6E-19 131.8 26.5 187 150-350 27-240 (296)
190 2bkl_A Prolyl endopeptidase; m 99.7 9.5E-16 3.2E-20 154.6 22.7 233 109-353 76-346 (695)
191 1qks_A Cytochrome CD1 nitrite 99.7 1.7E-13 5.9E-18 132.8 37.1 233 110-356 165-421 (567)
192 2qc5_A Streptogramin B lactona 99.7 4.5E-13 1.5E-17 120.4 36.6 237 99-351 18-255 (300)
193 3dsm_A Uncharacterized protein 99.7 2.1E-14 7.1E-19 130.8 27.6 234 101-353 44-299 (328)
194 1yr2_A Prolyl oligopeptidase; 99.7 1.1E-14 3.9E-19 147.7 28.7 294 45-355 96-440 (741)
195 1rwi_B Serine/threonine-protei 99.7 9.1E-15 3.1E-19 129.4 23.8 192 152-352 25-218 (270)
196 3no2_A Uncharacterized protein 99.7 3.1E-14 1E-18 125.8 25.9 181 161-350 4-189 (276)
197 1qks_A Cytochrome CD1 nitrite 99.6 4.8E-13 1.6E-17 129.7 31.8 236 101-351 197-533 (567)
198 1yr2_A Prolyl oligopeptidase; 99.6 4.2E-14 1.4E-18 143.6 25.5 232 109-353 115-390 (741)
199 2z2n_A Virginiamycin B lyase; 99.6 6.6E-12 2.2E-16 112.7 36.8 234 99-350 55-289 (299)
200 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 6.3E-13 2.2E-17 120.3 28.3 242 100-353 17-296 (314)
201 2mad_H Methylamine dehydrogena 99.6 3.1E-12 1.1E-16 118.0 32.4 221 108-345 28-286 (373)
202 3g4e_A Regucalcin; six bladed 99.6 4.6E-12 1.6E-16 113.6 32.1 231 98-346 10-262 (297)
203 3sjl_D Methylamine dehydrogena 99.6 5.6E-13 1.9E-17 121.2 25.6 224 107-345 39-299 (386)
204 1xip_A Nucleoporin NUP159; bet 99.6 5.9E-14 2E-18 128.1 18.8 181 102-298 39-230 (388)
205 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 9E-13 3.1E-17 119.3 26.7 193 151-350 18-250 (314)
206 3hrp_A Uncharacterized protein 99.6 3.7E-12 1.3E-16 119.2 30.1 239 101-353 131-407 (409)
207 3hrp_A Uncharacterized protein 99.6 1.8E-12 6.2E-17 121.3 27.4 198 151-352 131-350 (409)
208 2ghs_A AGR_C_1268P; regucalcin 99.6 2.2E-11 7.4E-16 110.7 33.4 227 101-346 49-292 (326)
209 2mad_H Methylamine dehydrogena 99.6 2.2E-11 7.5E-16 112.3 33.5 234 105-350 70-344 (373)
210 3dr2_A Exported gluconolactona 99.6 3.1E-12 1.1E-16 115.2 27.4 231 98-350 42-301 (305)
211 2qc5_A Streptogramin B lactona 99.6 5.8E-11 2E-15 106.5 34.5 235 99-351 60-295 (300)
212 1xip_A Nucleoporin NUP159; bet 99.5 3.5E-13 1.2E-17 123.1 19.1 173 151-342 38-230 (388)
213 3c75_H MADH, methylamine dehyd 99.5 2E-12 6.8E-17 119.8 24.3 220 110-344 82-337 (426)
214 3iuj_A Prolyl endopeptidase; h 99.5 1.4E-12 4.6E-17 131.3 24.3 241 97-355 125-404 (693)
215 3g4e_A Regucalcin; six bladed 99.5 1.5E-11 5E-16 110.3 27.7 190 152-350 14-223 (297)
216 3sjl_D Methylamine dehydrogena 99.5 5.5E-12 1.9E-16 114.7 24.7 263 91-384 71-373 (386)
217 2ghs_A AGR_C_1268P; regucalcin 99.4 2E-10 6.9E-15 104.3 29.7 184 153-350 51-254 (326)
218 2qe8_A Uncharacterized protein 99.4 3.1E-11 1.1E-15 110.5 24.6 243 101-349 17-314 (343)
219 3c75_H MADH, methylamine dehyd 99.4 1.9E-11 6.5E-16 113.3 22.5 261 90-381 110-409 (426)
220 1fwx_A Nitrous oxide reductase 99.4 2.1E-10 7E-15 108.8 26.5 232 115-356 18-361 (595)
221 3dr2_A Exported gluconolactona 99.4 2.1E-10 7.1E-15 103.2 24.5 186 151-350 45-261 (305)
222 2iwa_A Glutamine cyclotransfer 99.4 3E-10 1E-14 97.8 23.6 208 90-310 10-235 (266)
223 3iuj_A Prolyl endopeptidase; h 99.4 3.3E-11 1.1E-15 121.2 20.5 187 150-348 128-349 (693)
224 2ece_A 462AA long hypothetical 99.3 1.2E-09 4.2E-14 99.9 26.2 233 110-344 93-399 (462)
225 2ece_A 462AA long hypothetical 99.3 1.2E-09 4.2E-14 99.9 25.0 197 157-355 88-351 (462)
226 3hxj_A Pyrrolo-quinoline quino 99.3 1.7E-10 5.9E-15 105.0 19.6 220 100-350 59-278 (330)
227 1yiq_A Quinohemoprotein alcoho 99.3 1.6E-09 5.5E-14 108.2 26.9 241 112-381 121-512 (689)
228 3q7m_A Lipoprotein YFGL, BAMB; 99.3 5.4E-09 1.9E-13 97.0 28.8 226 112-353 53-293 (376)
229 3nol_A Glutamine cyclotransfer 99.3 1.7E-09 5.8E-14 91.8 21.4 197 90-301 32-245 (262)
230 1mda_H Methylamine dehydrogena 99.3 6E-10 2E-14 101.6 20.1 224 123-382 47-354 (368)
231 2hz6_A Endoplasmic reticulum t 99.2 3.4E-12 1.2E-16 117.9 4.8 204 111-338 8-216 (369)
232 1yiq_A Quinohemoprotein alcoho 99.2 1.5E-09 5.2E-14 108.4 23.7 239 112-353 70-416 (689)
233 1kb0_A Quinohemoprotein alcoho 99.2 1.1E-09 3.6E-14 109.3 22.2 238 112-353 77-420 (677)
234 3mbr_X Glutamine cyclotransfer 99.2 1.2E-08 4.1E-13 85.9 24.9 200 90-304 10-227 (243)
235 3nok_A Glutaminyl cyclase; bet 99.2 1.3E-08 4.5E-13 86.3 24.2 198 90-303 44-257 (268)
236 1kb0_A Quinohemoprotein alcoho 99.2 5.6E-09 1.9E-13 104.1 25.5 234 111-355 127-506 (677)
237 1fwx_A Nitrous oxide reductase 99.2 1.4E-09 4.8E-14 103.1 19.9 221 110-345 99-407 (595)
238 1mda_H Methylamine dehydrogena 99.2 1.9E-09 6.5E-14 98.3 18.8 220 90-321 57-356 (368)
239 1npe_A Nidogen, entactin; glyc 99.2 1.1E-07 3.8E-12 83.4 29.7 226 112-350 1-232 (267)
240 2iwa_A Glutamine cyclotransfer 99.2 2E-08 6.7E-13 86.5 23.4 193 152-351 22-232 (266)
241 2qe8_A Uncharacterized protein 99.1 3.3E-09 1.1E-13 97.0 19.8 203 98-306 64-315 (343)
242 3hxj_A Pyrrolo-quinoline quino 99.1 5.7E-09 2E-13 94.9 21.2 217 112-355 107-323 (330)
243 2fp8_A Strictosidine synthase; 99.1 6.4E-08 2.2E-12 87.6 27.3 245 101-355 19-312 (322)
244 2hz6_A Endoplasmic reticulum t 99.1 9E-12 3.1E-16 115.1 1.1 177 161-354 8-190 (369)
245 3qqz_A Putative uncharacterize 99.1 1.5E-07 5.1E-12 80.5 26.7 200 149-350 25-247 (255)
246 2p4o_A Hypothetical protein; p 99.1 3E-07 1E-11 82.5 29.7 229 101-347 32-279 (306)
247 1npe_A Nidogen, entactin; glyc 99.1 4.4E-07 1.5E-11 79.5 29.4 220 101-338 36-263 (267)
248 3nol_A Glutamine cyclotransfer 99.1 1.1E-07 3.8E-12 80.7 23.4 188 151-346 43-245 (262)
249 3mbr_X Glutamine cyclotransfer 99.0 5E-07 1.7E-11 76.0 24.9 186 151-345 21-223 (243)
250 3q7m_A Lipoprotein YFGL, BAMB; 99.0 2.4E-07 8.2E-12 85.8 25.1 216 111-350 102-331 (376)
251 1k3i_A Galactose oxidase precu 99.0 5.3E-08 1.8E-12 97.2 21.6 237 105-346 190-476 (656)
252 3nok_A Glutaminyl cyclase; bet 99.0 3.5E-07 1.2E-11 77.6 23.3 186 151-345 55-254 (268)
253 1kv9_A Type II quinohemoprotei 98.9 2.3E-07 7.9E-12 92.4 24.9 204 112-318 66-340 (668)
254 4a2l_A BT_4663, two-component 98.9 8.7E-06 3E-10 83.3 36.9 243 100-353 262-523 (795)
255 1kv9_A Type II quinohemoprotei 98.9 2.2E-07 7.5E-12 92.6 24.2 232 112-354 117-486 (668)
256 4a2l_A BT_4663, two-component 98.9 6.8E-06 2.3E-10 84.1 35.1 235 103-353 175-433 (795)
257 1ijq_A LDL receptor, low-densi 98.9 6.4E-06 2.2E-10 74.0 30.4 223 114-350 3-232 (316)
258 3qqz_A Putative uncharacterize 98.9 7E-06 2.4E-10 70.2 27.6 204 96-310 22-251 (255)
259 2fp8_A Strictosidine synthase; 98.9 1.4E-06 4.7E-11 78.8 24.5 184 152-345 20-248 (322)
260 2ad6_A Methanol dehydrogenase 98.8 2E-06 7E-11 83.8 26.9 230 112-353 115-491 (571)
261 3v64_C Agrin; beta propeller, 98.8 9.2E-06 3.2E-10 74.0 29.7 231 102-350 35-269 (349)
262 2xe4_A Oligopeptidase B; hydro 98.8 1.1E-06 3.8E-11 88.9 25.9 199 98-310 170-398 (751)
263 2ad6_A Methanol dehydrogenase 98.8 2.6E-06 8.9E-11 83.0 27.2 236 112-352 62-412 (571)
264 3v65_B Low-density lipoprotein 98.8 8.7E-06 3E-10 75.3 28.9 230 103-350 79-312 (386)
265 1w6s_A Methanol dehydrogenase 98.8 3.2E-06 1.1E-10 82.4 26.6 163 106-274 111-350 (599)
266 3p5b_L Low density lipoprotein 98.8 2E-05 6.8E-10 73.2 30.7 223 114-350 85-314 (400)
267 1w6s_A Methanol dehydrogenase 98.8 4.5E-06 1.5E-10 81.4 26.6 236 112-350 62-417 (599)
268 3tc9_A Hypothetical hydrolase; 98.8 4.3E-06 1.5E-10 78.5 25.7 239 102-353 138-427 (430)
269 3v9f_A Two-component system se 98.8 3.5E-05 1.2E-09 78.7 34.3 242 101-352 211-474 (781)
270 4hw6_A Hypothetical protein, I 98.7 7.5E-06 2.5E-10 76.8 25.9 240 101-353 139-430 (433)
271 2xbg_A YCF48-like protein; pho 98.7 0.00013 4.3E-09 65.8 33.7 233 100-350 35-273 (327)
272 1flg_A Protein (quinoprotein e 98.7 1.1E-05 3.7E-10 78.8 26.9 160 112-274 117-363 (582)
273 3sov_A LRP-6, low-density lipo 98.7 2.5E-05 8.4E-10 70.0 27.2 223 114-350 6-232 (318)
274 3v9f_A Two-component system se 98.7 3.8E-05 1.3E-09 78.4 32.1 236 100-350 362-606 (781)
275 2p4o_A Hypothetical protein; p 98.7 1.4E-05 4.9E-10 71.4 24.9 191 151-350 32-236 (306)
276 1k3i_A Galactose oxidase precu 98.6 3.5E-06 1.2E-10 84.1 20.5 238 99-345 241-530 (656)
277 3v64_C Agrin; beta propeller, 98.5 0.00016 5.6E-09 65.7 27.3 205 101-319 73-283 (349)
278 3tc9_A Hypothetical hydrolase; 98.5 4.2E-05 1.4E-09 71.7 23.7 155 152-312 138-301 (430)
279 1ijq_A LDL receptor, low-densi 98.5 0.00035 1.2E-08 62.5 28.4 207 100-318 29-245 (316)
280 3m0c_C LDL receptor, low-densi 98.5 0.00023 8E-09 71.6 29.4 218 121-352 403-628 (791)
281 3v65_B Low-density lipoprotein 98.5 0.00013 4.5E-09 67.4 25.6 206 100-319 115-326 (386)
282 2xe4_A Oligopeptidase B; hydro 98.4 1.3E-05 4.4E-10 81.2 20.2 196 152-355 175-397 (751)
283 2xbg_A YCF48-like protein; pho 98.4 0.00039 1.3E-08 62.6 27.7 233 100-350 79-316 (327)
284 3p5b_L Low density lipoprotein 98.4 0.00061 2.1E-08 63.2 29.1 209 99-319 110-328 (400)
285 3kya_A Putative phosphatase; s 98.4 0.00049 1.7E-08 64.7 27.9 243 102-353 140-472 (496)
286 4hw6_A Hypothetical protein, I 98.4 0.0002 6.7E-09 67.2 25.4 194 152-350 140-368 (433)
287 1flg_A Protein (quinoprotein e 98.3 4.8E-05 1.6E-09 74.3 20.7 193 105-301 250-549 (582)
288 1n7d_A LDL receptor, low-densi 98.3 3.6E-06 1.2E-10 84.1 13.0 216 121-350 385-608 (699)
289 3sov_A LRP-6, low-density lipo 98.3 0.00084 2.9E-08 60.0 26.4 206 101-319 35-246 (318)
290 2p9w_A MAL S 1 allergenic prot 98.3 0.00058 2E-08 60.1 24.3 164 102-267 14-216 (334)
291 4a0p_A LRP6, LRP-6, low-densit 98.3 0.0026 9E-08 62.5 31.4 222 114-353 8-234 (628)
292 2ism_A Putative oxidoreductase 98.3 0.00082 2.8E-08 61.1 26.0 231 101-344 31-333 (352)
293 3amr_A 3-phytase; beta-propell 98.2 0.00075 2.6E-08 59.9 23.2 184 161-355 39-262 (355)
294 3amr_A 3-phytase; beta-propell 98.2 0.00086 2.9E-08 59.6 23.2 195 111-319 39-272 (355)
295 2p9w_A MAL S 1 allergenic prot 98.2 9.4E-05 3.2E-09 65.0 16.9 162 193-355 12-214 (334)
296 3s94_A LRP-6, low-density lipo 98.2 0.001 3.4E-08 65.4 25.6 219 121-353 17-240 (619)
297 3m0c_C LDL receptor, low-densi 98.1 0.0036 1.2E-07 63.0 29.3 207 100-318 423-639 (791)
298 3kya_A Putative phosphatase; s 98.1 0.002 6.7E-08 60.7 25.6 158 152-311 140-340 (496)
299 3a9g_A Putative uncharacterize 98.1 0.0046 1.6E-07 56.1 29.8 230 101-344 29-330 (354)
300 3sre_A PON1, serum paraoxonase 98.1 0.0011 3.7E-08 59.7 22.4 212 102-319 51-308 (355)
301 2vpj_A Kelch-like protein 12; 97.9 0.0022 7.5E-08 56.9 21.0 218 111-346 14-263 (301)
302 2ism_A Putative oxidoreductase 97.9 0.013 4.3E-07 53.2 25.4 100 152-254 32-153 (352)
303 2xzh_A Clathrin heavy chain 1; 97.9 0.011 3.9E-07 51.5 29.3 228 106-350 72-326 (365)
304 3ei3_A DNA damage-binding prot 97.9 0.012 4.3E-07 61.9 28.3 215 123-352 808-1058(1158)
305 1n7d_A LDL receptor, low-densi 97.9 9.5E-05 3.2E-09 73.9 12.0 208 101-320 406-623 (699)
306 3ii7_A Kelch-like protein 7; p 97.8 0.0063 2.1E-07 54.0 21.7 217 112-346 12-257 (306)
307 2g8s_A Glucose/sorbosone dehyd 97.8 0.021 7.1E-07 51.8 29.3 243 101-350 18-348 (353)
308 3a9g_A Putative uncharacterize 97.8 0.022 7.7E-07 51.6 25.5 145 151-300 29-216 (354)
309 4a0p_A LRP6, LRP-6, low-densit 97.7 0.032 1.1E-06 54.8 27.7 184 164-354 8-195 (628)
310 3s94_A LRP-6, low-density lipo 97.7 0.013 4.3E-07 57.6 24.5 202 100-314 39-246 (619)
311 2xn4_A Kelch-like protein 2; s 97.7 0.0049 1.7E-07 54.6 19.7 218 112-347 16-262 (302)
312 1bpo_A Protein (clathrin); cla 97.7 0.03 1E-06 51.0 29.5 232 105-353 70-328 (494)
313 2xzh_A Clathrin heavy chain 1; 97.6 0.027 9.4E-07 49.1 30.5 210 121-350 48-284 (365)
314 1bpo_A Protein (clathrin); cla 97.6 0.041 1.4E-06 50.1 29.7 210 121-350 47-283 (494)
315 1zgk_A Kelch-like ECH-associat 97.5 0.005 1.7E-07 54.7 17.3 219 111-347 24-273 (308)
316 1cru_A Protein (soluble quinop 97.5 0.071 2.4E-06 50.0 31.5 113 100-212 26-162 (454)
317 4asc_A Kelch repeat and BTB do 97.4 0.058 2E-06 47.9 23.6 214 114-346 7-253 (315)
318 3sre_A PON1, serum paraoxonase 97.4 0.051 1.7E-06 48.9 22.1 184 153-346 52-287 (355)
319 3sbq_A Nitrous-oxide reductase 97.4 0.087 3E-06 49.6 23.9 238 115-357 73-409 (638)
320 3pbp_A Nucleoporin NUP82; beta 97.4 0.013 4.5E-07 53.2 17.8 146 159-308 29-208 (452)
321 3pbp_A Nucleoporin NUP82; beta 97.4 0.026 9E-07 51.3 19.5 147 202-351 29-207 (452)
322 2be1_A Serine/threonine-protei 97.4 0.0028 9.4E-08 56.5 13.1 193 113-316 11-236 (339)
323 3ii7_A Kelch-like protein 7; p 97.3 0.023 8E-07 50.3 18.9 175 162-346 12-210 (306)
324 2vpj_A Kelch-like protein 12; 97.3 0.018 6.1E-07 50.9 17.9 191 111-317 62-283 (301)
325 3das_A Putative oxidoreductase 97.3 0.086 2.9E-06 47.2 27.8 238 100-344 31-326 (347)
326 3ott_A Two-component system se 97.3 0.19 6.5E-06 50.9 29.5 231 100-355 21-259 (758)
327 2g8s_A Glucose/sorbosone dehyd 97.3 0.1 3.5E-06 47.2 24.1 144 151-298 18-214 (353)
328 3s25_A Hypothetical 7-bladed b 97.2 0.089 3E-06 46.3 21.3 199 109-345 22-242 (302)
329 1tl2_A L10, protein (tachylect 97.2 0.024 8.4E-07 46.4 15.9 145 194-350 41-204 (236)
330 2woz_A Kelch repeat and BTB do 97.1 0.13 4.6E-06 45.6 21.4 214 114-346 18-263 (318)
331 2xn4_A Kelch-like protein 2; s 97.1 0.051 1.8E-06 47.9 18.2 193 111-319 61-283 (302)
332 4asc_A Kelch repeat and BTB do 97.0 0.14 4.9E-06 45.3 20.7 174 164-347 7-207 (315)
333 1xi4_A Clathrin heavy chain; a 97.0 0.044 1.5E-06 57.7 18.8 227 106-350 71-325 (1630)
334 1xi4_A Clathrin heavy chain; a 96.9 0.087 3E-06 55.5 20.4 210 121-350 47-283 (1630)
335 3ei3_A DNA damage-binding prot 96.9 0.54 1.9E-05 49.7 31.4 226 100-346 513-757 (1158)
336 1zgk_A Kelch-like ECH-associat 96.9 0.085 2.9E-06 46.7 18.1 192 111-318 70-293 (308)
337 1tl2_A L10, protein (tachylect 96.8 0.027 9.2E-07 46.2 12.2 149 101-258 41-202 (236)
338 3s25_A Hypothetical 7-bladed b 96.7 0.27 9.4E-06 43.1 19.8 200 106-344 58-280 (302)
339 2zwa_A Leucine carboxyl methyl 96.7 0.15 5.2E-06 50.8 20.1 233 110-345 396-674 (695)
340 2be1_A Serine/threonine-protei 96.7 0.004 1.4E-07 55.5 7.6 113 163-275 11-139 (339)
341 2woz_A Kelch repeat and BTB do 96.7 0.32 1.1E-05 43.1 21.5 173 164-346 18-216 (318)
342 3das_A Putative oxidoreductase 96.6 0.23 7.9E-06 44.4 18.4 146 193-342 31-218 (347)
343 2uvk_A YJHT; unknown function, 96.6 0.28 9.6E-06 44.3 19.4 145 111-264 19-224 (357)
344 3ott_A Two-component system se 96.5 0.83 2.8E-05 46.2 32.3 239 101-350 324-581 (758)
345 1cru_A Protein (soluble quinop 96.5 0.33 1.1E-05 45.5 19.8 106 194-300 27-162 (454)
346 3sbq_A Nitrous-oxide reductase 96.5 0.58 2E-05 44.2 24.5 220 111-344 141-453 (638)
347 2uvk_A YJHT; unknown function, 96.0 0.12 4.2E-06 46.7 13.7 195 111-317 65-348 (357)
348 2zwa_A Leucine carboxyl methyl 94.9 1.2 4.1E-05 44.4 17.5 152 160-312 396-577 (695)
349 3b7f_A Glycosyl hydrolase, BNR 94.4 2.9 9.8E-05 38.2 25.2 220 113-344 23-297 (394)
350 3b7f_A Glycosyl hydrolase, BNR 93.9 3.6 0.00012 37.5 21.5 182 163-347 23-254 (394)
351 2wg3_C Hedgehog-interacting pr 93.5 4.9 0.00017 37.6 29.8 237 102-344 15-354 (463)
352 3qhy_B Beta-lactamase inhibito 93.4 3.5 0.00012 35.6 18.1 217 102-353 25-243 (282)
353 3q6k_A 43.2 kDa salivary prote 93.1 4.9 0.00017 36.3 23.3 216 100-344 86-342 (381)
354 3uc1_A DNA gyrase subunit A; D 90.8 8.2 0.00028 34.1 24.2 232 112-355 3-278 (327)
355 1wp5_A Topoisomerase IV; broke 90.8 8.1 0.00028 34.1 26.0 238 110-355 3-276 (323)
356 3l6v_A GYRA, DNA gyrase subuni 90.7 9.1 0.00031 34.5 25.1 237 108-355 3-315 (370)
357 1suu_A DNA gyrase subunit A; t 89.8 9.8 0.00033 33.4 29.7 236 110-350 6-277 (312)
358 2wg3_C Hedgehog-interacting pr 89.1 11 0.00038 35.2 14.8 111 236-347 14-160 (463)
359 3uc1_A DNA gyrase subunit A; D 88.7 12 0.00041 33.0 20.8 166 99-266 93-279 (327)
360 3qhy_B Beta-lactamase inhibito 88.3 12 0.00039 32.3 18.6 180 151-355 24-206 (282)
361 3no0_A DNA gyrase subunit A; D 87.9 12 0.00042 32.0 21.2 191 151-351 24-239 (276)
362 1zi0_A DNA gyrase subunit A; b 87.3 14 0.00049 32.2 27.4 237 110-352 1-273 (307)
363 3no0_A DNA gyrase subunit A; D 86.3 15 0.00052 31.4 20.5 165 98-266 65-246 (276)
364 1suu_A DNA gyrase subunit A; t 82.7 24 0.00082 30.8 25.2 192 160-357 6-232 (312)
365 4gq2_M Nucleoporin NUP120; bet 81.9 31 0.001 35.8 15.0 38 151-188 236-273 (950)
366 4hvt_A Ritya.17583.B, post-pro 76.5 64 0.0022 32.1 22.7 243 102-354 130-428 (711)
367 1sqj_A OXG-RCBH, oligoxylogluc 74.4 77 0.0026 32.0 26.1 243 100-346 14-316 (789)
368 3l6v_A GYRA, DNA gyrase subuni 67.6 69 0.0024 28.7 25.4 149 158-310 3-178 (370)
369 3zwu_A Alkaline phosphatase PH 65.9 20 0.00068 34.6 8.2 60 102-168 477-548 (592)
370 4fhn_B Nucleoporin NUP120; pro 65.8 85 0.0029 33.3 13.8 37 196-232 240-276 (1139)
371 4fhn_B Nucleoporin NUP120; pro 65.4 1.4E+02 0.0049 31.6 16.3 38 237-274 239-276 (1139)
372 3zwu_A Alkaline phosphatase PH 62.7 27 0.00092 33.7 8.4 60 152-211 477-548 (592)
373 3q6k_A 43.2 kDa salivary prote 62.1 90 0.0031 28.1 16.8 137 216-354 124-304 (381)
374 1zi0_A DNA gyrase subunit A; b 61.1 82 0.0028 27.3 25.0 191 160-356 1-226 (307)
375 4a9v_A PHOX; hydrolase, beta-p 59.9 43 0.0015 32.0 9.1 62 101-169 476-549 (592)
376 1wp5_A Topoisomerase IV; broke 58.5 95 0.0032 27.2 26.6 166 100-266 38-225 (323)
377 4a9v_A PHOX; hydrolase, beta-p 57.6 53 0.0018 31.4 9.3 62 151-212 476-549 (592)
378 3f7f_A Nucleoporin NUP120; nuc 55.2 92 0.0031 30.8 10.7 36 152-189 223-258 (729)
379 4gq2_M Nucleoporin NUP120; bet 54.5 2E+02 0.0069 29.7 23.5 38 237-274 237-274 (950)
380 1sqj_A OXG-RCBH, oligoxylogluc 50.8 2.1E+02 0.0071 28.8 22.8 154 150-306 14-195 (789)
381 3f7f_A Nucleoporin NUP120; nuc 48.7 24 0.00083 34.7 5.6 38 101-140 222-259 (729)
382 1zvt_A Topoisomerase IV subuni 42.7 1.5E+02 0.0051 24.8 13.7 159 207-373 4-179 (256)
383 1zvt_A Topoisomerase IV subuni 42.1 1.5E+02 0.0052 24.8 14.2 145 113-266 3-163 (256)
384 2cn3_A Xyloglucanase, beta-1,4 29.1 4.4E+02 0.015 26.2 26.9 239 102-345 24-321 (737)
385 3kci_A Probable E3 ubiquitin-p 27.3 3.3E+02 0.011 24.2 32.4 194 152-354 106-343 (389)
386 2cn3_A Xyloglucanase, beta-1,4 26.9 4.8E+02 0.016 25.9 22.4 189 152-343 24-261 (737)
387 3mez_B Mannose-specific lectin 24.8 1.8E+02 0.0063 20.4 10.0 49 162-210 24-72 (113)
388 2zux_A YESW protein; beta-prop 23.3 5E+02 0.017 24.9 21.1 196 161-383 125-409 (591)
389 3a0f_A Xyloglucanase; beta-pro 22.4 5.9E+02 0.02 25.4 22.8 152 150-303 20-203 (763)
390 2zuy_A YESX protein; beta-prop 21.6 5.5E+02 0.019 24.7 22.4 204 123-336 156-428 (620)
391 3s9j_A Member of DUF4221 famil 21.3 4.4E+02 0.015 23.5 9.1 77 244-321 36-119 (369)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.4e-48 Score=369.47 Aligned_cols=287 Identities=22% Similarity=0.394 Sum_probs=260.5
Q ss_pred eeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCC
Q psy8448 93 KQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSG 172 (482)
Q Consensus 93 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg 172 (482)
...+.+|.++|++++|+|++++|++|+.||+|+|||+.+++....+ .+|...|.+++|+|++++|++|+.|+
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l--------~~h~~~V~~v~~~~~~~~l~sgs~D~ 172 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL--------KGHTDSVQDISFDHSGKLLASCSADM 172 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE--------CCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEE--------eccCCcEEEEEEcCCCCEEEEEeCCC
Confidence 3455699999999999999999999999999999999988765544 34688999999999999999999999
Q ss_pred cEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEE
Q psy8448 173 KVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLS 252 (482)
Q Consensus 173 ~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~ 252 (482)
+|++||+.+++.+..+ .+|...|.+++|+|++.+|++|+.|+.|++||+++++++..+.+|...|.++.++|++.+|++
T Consensus 173 ~i~iwd~~~~~~~~~~-~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s 251 (410)
T 1vyh_C 173 TIKLWDFQGFECIRTM-HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIAS 251 (410)
T ss_dssp CCCEEETTSSCEEECC-CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred eEEEEeCCCCceeEEE-cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEE
Confidence 9999999999988888 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCC-------------------CCEEEEEeCCCeEEEEEc-CC
Q psy8448 253 ASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKN-------------------TEHFVVCNKTNTVVIMNM-QG 312 (482)
Q Consensus 253 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-------------------~~~l~~~~~d~~i~i~d~-~~ 312 (482)
++.|+.|++||++++++...+. .|...|.+++|+|++ +.++++++.|+.|++||+ .+
T Consensus 252 ~s~D~~v~vwd~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~ 328 (410)
T 1vyh_C 252 CSNDQTVRVWVVATKECKAELR---EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG 328 (410)
T ss_dssp EETTSCEEEEETTTCCEEEEEC---CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT
T ss_pred EcCCCeEEEEECCCCceeeEec---CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC
Confidence 9999999999999999888877 888999999999963 268999999999999999 57
Q ss_pred cEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccC
Q psy8448 313 QIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADIN 392 (482)
Q Consensus 313 ~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (482)
..+..+..+ ...|.+++|+|+|++|++|+.||.|+ +|+..++
T Consensus 329 ~~~~~~~~h---~~~v~~v~~~~~g~~l~s~s~D~~i~------------------vwd~~~~----------------- 370 (410)
T 1vyh_C 329 MCLMTLVGH---DNWVRGVLFHSGGKFILSCADDKTLR------------------VWDYKNK----------------- 370 (410)
T ss_dssp EEEEEEECC---SSCEEEEEECSSSSCEEEEETTTEEE------------------EECCTTS-----------------
T ss_pred ceEEEEECC---CCcEEEEEEcCCCCEEEEEeCCCeEE------------------EEECCCC-----------------
Confidence 777777765 77899999999999999999999999 5555544
Q ss_pred CCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEE
Q psy8448 393 NGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGT 472 (482)
Q Consensus 393 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s 472 (482)
+. .. .+.+|...|++++|+|++++|||
T Consensus 371 --------------~~-----------------------------~~----------~~~~h~~~v~~l~~~~~~~~l~s 397 (410)
T 1vyh_C 371 --------------RC-----------------------------MK----------TLNAHEHFVTSLDFHKTAPYVVT 397 (410)
T ss_dssp --------------CC-----------------------------CE----------EEECCSSCEEEEEECSSSSCEEE
T ss_pred --------------ce-----------------------------EE----------EEcCCCCcEEEEEEcCCCCEEEE
Confidence 22 22 67789999999999999999999
Q ss_pred EecCceeecC
Q psy8448 473 YSEDGLLRFS 482 (482)
Q Consensus 473 ~~~Dg~i~iW 482 (482)
|+.||+|+||
T Consensus 398 gs~D~~i~vW 407 (410)
T 1vyh_C 398 GSVDQTVKVW 407 (410)
T ss_dssp EETTSEEEEE
T ss_pred EeCCCcEEEE
Confidence 9999999999
No 2
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.6e-47 Score=353.27 Aligned_cols=286 Identities=20% Similarity=0.318 Sum_probs=252.0
Q ss_pred eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCc
Q psy8448 94 QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGK 173 (482)
Q Consensus 94 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~ 173 (482)
..+.+|.+.|++++|+|++++|++|+.||+|++||+.+++....+.. |...|.+++|+|++++|++++.|+.
T Consensus 49 ~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~--------~~~~v~~~~~s~~~~~l~s~~~d~~ 120 (340)
T 1got_B 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL--------RSSWVMTCAYAPSGNYVACGGLDNI 120 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC--------SSSCEEEEEECTTSSEEEEEETTCE
T ss_pred eeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeec--------CCccEEEEEECCCCCEEEEEeCCCe
Confidence 44569999999999999999999999999999999998877655443 4688999999999999999999999
Q ss_pred EEEEEcCCCe----EeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCE
Q psy8448 174 VKIWKIATGQ----CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHS 249 (482)
Q Consensus 174 i~iwd~~~~~----~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 249 (482)
|++|++.+++ ....+ .+|...|.++.|++++. +++++.|+.|++||+++++.+..+.+|.+.|.+++|+|++++
T Consensus 121 v~iw~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 198 (340)
T 1got_B 121 CSIYNLKTREGNVRVSREL-AGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL 198 (340)
T ss_dssp EEEEETTTCSBSCEEEEEE-ECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred EEEEECccCCCcceeEEEe-cCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCE
Confidence 9999997653 34445 68999999999998774 899999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CcEEEEecCCcccCcCE
Q psy8448 250 VLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSGKREGGDF 328 (482)
Q Consensus 250 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~v 328 (482)
|++++.|+.|++||++++++...+. +|...|.+++|+|++ .++++++.|+.|++||++ ++.+..+. +..+...|
T Consensus 199 l~sg~~d~~v~~wd~~~~~~~~~~~---~h~~~v~~v~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~~~~v 273 (340)
T 1got_B 199 FVSGACDASAKLWDVREGMCRQTFT---GHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQELMTYS-HDNIICGI 273 (340)
T ss_dssp EEEEETTSCEEEEETTTCSEEEEEC---CCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEEC-CTTCCSCE
T ss_pred EEEEeCCCcEEEEECCCCeeEEEEc---CCcCCEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCcEEEEEc-cCCcccce
Confidence 9999999999999999999888887 889999999999998 899999999999999994 55555554 33335679
Q ss_pred EEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCC
Q psy8448 329 LCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKL 408 (482)
Q Consensus 329 ~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 408 (482)
.+++|+|+|++|++|+.||.|+ +|+..++ ..
T Consensus 274 ~~~~~s~~g~~l~~g~~d~~i~------------------vwd~~~~-------------------------------~~ 304 (340)
T 1got_B 274 TSVSFSKSGRLLLAGYDDFNCN------------------VWDALKA-------------------------------DR 304 (340)
T ss_dssp EEEEECTTSSEEEEEETTSEEE------------------EEETTTC-------------------------------CE
T ss_pred EEEEECCCCCEEEEECCCCeEE------------------EEEcccC-------------------------------cE
Confidence 9999999999999999999999 5555444 11
Q ss_pred CchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448 409 PEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS 482 (482)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW 482 (482)
.. .+.+|.+.|++++|+|+|++||||+.||+|+||
T Consensus 305 -----------------------------~~----------~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iW 339 (340)
T 1got_B 305 -----------------------------AG----------VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339 (340)
T ss_dssp -----------------------------EE----------EEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred -----------------------------ee----------EeecCCCcEEEEEEcCCCCEEEEEcCCccEEec
Confidence 22 667899999999999999999999999999999
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.3e-47 Score=350.23 Aligned_cols=286 Identities=17% Similarity=0.308 Sum_probs=253.9
Q ss_pred eecCCCCcEEEEEEcCC----CCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC
Q psy8448 95 IKFGSKSHVECARFSPD----GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ 170 (482)
Q Consensus 95 ~~~~h~~~v~~~~~s~~----~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~ 170 (482)
...+|.+.|++++|+|+ +++|++|+.|++|+||++.+++... ...+.+|...|.+++|++++.++++++.
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~------~~~l~gh~~~v~~~~~~~~~~~l~s~s~ 100 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDL------QWSLEGHQLGVVSVDISHTLPIAASSSL 100 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEE------EEEECCCSSCEEEEEECSSSSEEEEEET
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeee------eeeeccCCCCEEEEEECCCCCEEEEEeC
Confidence 34599999999999984 6799999999999999998765322 2234568899999999999999999999
Q ss_pred CCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEE
Q psy8448 171 SGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSV 250 (482)
Q Consensus 171 dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l 250 (482)
|+.|++||+.+++.+..+ ..+...+.+++|+|++++|++++.|+.|++||+++++....+..|...|.+++|+|++++|
T Consensus 101 D~~i~lWd~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l 179 (321)
T 3ow8_A 101 DAHIRLWDLENGKQIKSI-DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYL 179 (321)
T ss_dssp TSEEEEEETTTTEEEEEE-ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEE
T ss_pred CCcEEEEECCCCCEEEEE-eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEE
Confidence 999999999999998888 5778889999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEE
Q psy8448 251 LSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFL 329 (482)
Q Consensus 251 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~ 329 (482)
++++.||.|++||+++++.+..+. +|..+|.+++|+|++ .+|++++.|+.|++||+ .++....+..+ ...|.
T Consensus 180 asg~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~l~~spd~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~h---~~~v~ 252 (321)
T 3ow8_A 180 ASGAIDGIINIFDIATGKLLHTLE---GHAMPIRSLTFSPDS-QLLVTASDDGYIKIYDVQHANLAGTLSGH---ASWVL 252 (321)
T ss_dssp EEEETTSCEEEEETTTTEEEEEEC---CCSSCCCEEEECTTS-CEEEEECTTSCEEEEETTTCCEEEEECCC---SSCEE
T ss_pred EEEcCCCeEEEEECCCCcEEEEEc---ccCCceeEEEEcCCC-CEEEEEcCCCeEEEEECCCcceeEEEcCC---CCceE
Confidence 999999999999999999888877 888999999999998 89999999999999999 56677777655 77899
Q ss_pred EEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCC
Q psy8448 330 CCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLP 409 (482)
Q Consensus 330 ~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 409 (482)
+++|+|++++|++++.|+.|+ +|++.++ +.
T Consensus 253 ~~~~sp~~~~l~s~s~D~~v~------------------iwd~~~~-------------------------------~~- 282 (321)
T 3ow8_A 253 NVAFCPDDTHFVSSSSDKSVK------------------VWDVGTR-------------------------------TC- 282 (321)
T ss_dssp EEEECTTSSEEEEEETTSCEE------------------EEETTTT-------------------------------EE-
T ss_pred EEEECCCCCEEEEEeCCCcEE------------------EEeCCCC-------------------------------EE-
Confidence 999999999999999999999 5555555 11
Q ss_pred chhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448 410 EKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS 482 (482)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW 482 (482)
.. .+.+|.+.|.+++|+|++++|++++.||+|+||
T Consensus 283 ----------------------------~~----------~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vw 317 (321)
T 3ow8_A 283 ----------------------------VH----------TFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIY 317 (321)
T ss_dssp ----------------------------EE----------EECCCSSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred ----------------------------EE----------EEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 22 566899999999999999999999999999998
No 4
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.2e-46 Score=348.85 Aligned_cols=287 Identities=21% Similarity=0.300 Sum_probs=250.4
Q ss_pred eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCc
Q psy8448 94 QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGK 173 (482)
Q Consensus 94 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~ 173 (482)
..+.+|.+.|++++|+|++++|++|+.||+|+|||..+++....+.. |...|.+++|+|++.+|++++.|+.
T Consensus 58 ~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~--------~~~~v~~~~~sp~g~~lasg~~d~~ 129 (354)
T 2pbi_B 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTM--------PCTWVMACAYAPSGCAIACGGLDNK 129 (354)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC--------SSSCCCEEEECTTSSEEEEESTTSE
T ss_pred EEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEec--------CCCCEEEEEECCCCCEEEEeeCCCC
Confidence 34569999999999999999999999999999999988876655443 3578999999999999999999999
Q ss_pred EEEEEcCCC------eEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcC--
Q psy8448 174 VKIWKIATG------QCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTA-- 245 (482)
Q Consensus 174 i~iwd~~~~------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~-- 245 (482)
+++|++... .....+ ..|...|.+++|+|++..|++++.|+.|++||+++++.+..+.+|...|.+++|+|
T Consensus 130 i~v~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 208 (354)
T 2pbi_B 130 CSVYPLTFDKNENMAAKKKSV-AMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE 208 (354)
T ss_dssp EEEEECCCCTTCCSGGGCEEE-EECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCS
T ss_pred EEEEEEeccccccccccceee-eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCC
Confidence 999998643 223444 57999999999999999999999999999999999999999999999999999987
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CcEEEEecCCccc
Q psy8448 246 DGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSGKRE 324 (482)
Q Consensus 246 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~ 324 (482)
++++|++++.||.|++||+++++++..+. .|...|.+++|+|++ .++++++.|+.|++||++ ++.+..+.. ...
T Consensus 209 ~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~---~h~~~v~~v~~~p~~-~~l~s~s~D~~v~lwd~~~~~~~~~~~~-~~~ 283 (354)
T 2pbi_B 209 TGNTFVSGGCDKKAMVWDMRSGQCVQAFE---THESDVNSVRYYPSG-DAFASGSDDATCRLYDLRADREVAIYSK-ESI 283 (354)
T ss_dssp SCCEEEEEETTSCEEEEETTTCCEEEEEC---CCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECC-TTC
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEec---CCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcC-CCc
Confidence 56899999999999999999999888877 889999999999998 899999999999999995 445544443 223
Q ss_pred CcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhcccc
Q psy8448 325 GGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQ 404 (482)
Q Consensus 325 ~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (482)
...+.+++|+|+|++|++|+.|+.|+ +|+..++
T Consensus 284 ~~~~~~~~~s~~g~~l~~g~~d~~i~------------------vwd~~~~----------------------------- 316 (354)
T 2pbi_B 284 IFGASSVDFSLSGRLLFAGYNDYTIN------------------VWDVLKG----------------------------- 316 (354)
T ss_dssp CSCEEEEEECTTSSEEEEEETTSCEE------------------EEETTTC-----------------------------
T ss_pred ccceeEEEEeCCCCEEEEEECCCcEE------------------EEECCCC-----------------------------
Confidence 45789999999999999999999999 5555555
Q ss_pred ccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448 405 SLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS 482 (482)
Q Consensus 405 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW 482 (482)
.. .. .+.+|.+.|++++|+|||++||||+.||+|+||
T Consensus 317 --~~-----------------------------~~----------~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW 353 (354)
T 2pbi_B 317 --SR-----------------------------VS----------ILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353 (354)
T ss_dssp --SE-----------------------------EE----------EECCCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred --ce-----------------------------EE----------EEECCCCcEEEEEECCCCCEEEEEcCCCCEEec
Confidence 11 22 566899999999999999999999999999999
No 5
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.2e-45 Score=335.16 Aligned_cols=285 Identities=19% Similarity=0.296 Sum_probs=247.4
Q ss_pred eecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcE
Q psy8448 95 IKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKV 174 (482)
Q Consensus 95 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i 174 (482)
.+.+|.+.|++++|+|++++|++|+.||+|++||+.+++....+. .|..+|.+++|+|++++|++|+.|+.|
T Consensus 8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~s~s~d~~i 79 (304)
T 2ynn_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQ--------VTETPVRAGKFIARKNWIIVGSDDFRI 79 (304)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE--------CCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred eecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEee--------ccCCcEEEEEEeCCCCEEEEECCCCEE
Confidence 345899999999999999999999999999999999887665544 357899999999999999999999999
Q ss_pred EEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCC-ceEEEeeccccceeEEEEcC-CCCEEEE
Q psy8448 175 KIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSG-KMLKEFRGHSSFVNDITFTA-DGHSVLS 252 (482)
Q Consensus 175 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~l~~~~-~~~~l~~ 252 (482)
++||+.+++.+..+ ..|...|.+++|+|++++|++|+.|+.|++||++++ .....+.+|...|.+++|+| ++..|++
T Consensus 80 ~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s 158 (304)
T 2ynn_A 80 RVFNYNTGEKVVDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS 158 (304)
T ss_dssp EEEETTTCCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEE
T ss_pred EEEECCCCcEEEEE-eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEE
Confidence 99999999999888 689999999999999999999999999999999887 45567889999999999999 6789999
Q ss_pred EeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCC-CCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEE
Q psy8448 253 ASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPK-NTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLC 330 (482)
Q Consensus 253 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~ 330 (482)
++.|+.|++||++++.....+.. .+...+..+.|+|. ...++++++.|+.|++||+ .++.+..+..+ ...|.+
T Consensus 159 gs~D~~v~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h---~~~v~~ 233 (304)
T 2ynn_A 159 GCLDRTVKVWSLGQSTPNFTLTT--GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH---MSNVSF 233 (304)
T ss_dssp EETTSEEEEEETTCSSCSEEEEC--CCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECC---SSCEEE
T ss_pred EeCCCeEEEEECCCCCccceecc--CCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCC---CCCEEE
Confidence 99999999999988776555542 56678899999873 2279999999999999999 57777777765 778999
Q ss_pred EEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCc
Q psy8448 331 CTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPE 410 (482)
Q Consensus 331 ~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 410 (482)
++|+|++++|++|+.||.|+ +|+..++ ++
T Consensus 234 ~~~~p~~~~l~s~s~Dg~i~------------------iWd~~~~-------------------------------~~-- 262 (304)
T 2ynn_A 234 AVFHPTLPIIISGSEDGTLK------------------IWNSSTY-------------------------------KV-- 262 (304)
T ss_dssp EEECSSSSEEEEEETTSCEE------------------EEETTTC-------------------------------CE--
T ss_pred EEECCCCCEEEEEcCCCeEE------------------EEECCCC-------------------------------ce--
Confidence 99999999999999999999 5666555 22
Q ss_pred hhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcc--eEEEEecCceeec
Q psy8448 411 KKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQN--LLGTYSEDGLLRF 481 (482)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~--~l~s~~~Dg~i~i 481 (482)
.. .+..|...+.+++|+|++. +||+|++||.+.+
T Consensus 263 ---------------------------~~----------~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~ 298 (304)
T 2ynn_A 263 ---------------------------EK----------TLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL 298 (304)
T ss_dssp ---------------------------EE----------EECCSSSSEEEEEECTTCGGGCEEEEETTEEEEE
T ss_pred ---------------------------ee----------eccCCCccEEEEEECCCCCceEEEEecCCceEEE
Confidence 33 5667888899999999875 6899998887653
No 6
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.9e-45 Score=364.59 Aligned_cols=368 Identities=17% Similarity=0.198 Sum_probs=269.2
Q ss_pred CCCCceeecc-CCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCcee--ecccc
Q psy8448 64 LPPGTTIDLF-RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIR--KDLKY 140 (482)
Q Consensus 64 ~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~--~~~~~ 140 (482)
.|+|..+++. .+.+.+|+..... ....+.+|...|++++|+|+|++||+|+.||+|+|||+.+++.. ..+..
T Consensus 27 spdg~~l~~~~~~~v~l~~~~~~~-----~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~ 101 (611)
T 1nr0_A 27 TPAGDKIQYCNGTSVYTVPVGSLT-----DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPV 101 (611)
T ss_dssp CTTSSEEEEEETTEEEEEETTCSS-----CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEEC
T ss_pred CCCCCEEEeCCCCEEEEecCCCcc-----cCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecc
Confidence 3555555443 3446667654322 22344599999999999999999999999999999998654321 11110
Q ss_pred ------------------------------------ccccccccccccEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCe
Q psy8448 141 ------------------------------------QAQDNFMLMEEAVMSLAYSRDSE-MLASGSQSGKVKIWKIATGQ 183 (482)
Q Consensus 141 ------------------------------------~~~~~~~~h~~~i~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~ 183 (482)
.....+.+|...|++++|+|++. .|++++.|++|++||..+++
T Consensus 102 ~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~ 181 (611)
T 1nr0_A 102 FSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK 181 (611)
T ss_dssp SSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE
T ss_pred cCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe
Confidence 01123567899999999999987 59999999999999999988
Q ss_pred EeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEee-------ccccceeEEEEcCCCCEEEEEeCC
Q psy8448 184 CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFR-------GHSSFVNDITFTADGHSVLSASSD 256 (482)
Q Consensus 184 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~i~~l~~~~~~~~l~~~~~d 256 (482)
....+ .+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+. +|.+.|.+++|+|++++|++++.|
T Consensus 182 ~~~~l-~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D 260 (611)
T 1nr0_A 182 FKSTF-GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD 260 (611)
T ss_dssp EEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT
T ss_pred Eeeee-ccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCC
Confidence 88888 7899999999999999999999999999999999999888884 799999999999999999999999
Q ss_pred CcEEEEECCCCceeeeee----------------------------------------ccCCCccceeEEEEcCCCCCEE
Q psy8448 257 GTVKMWNLKTTECTSTFK----------------------------------------SLGASDIAVNSIHLLPKNTEHF 296 (482)
Q Consensus 257 g~i~i~d~~~~~~~~~~~----------------------------------------~~~~~~~~v~~i~~~~~~~~~l 296 (482)
++|++||++++++...+. ...+|...|.+++|+|++ .++
T Consensus 261 ~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg-~~l 339 (611)
T 1nr0_A 261 KTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG-KTL 339 (611)
T ss_dssp SEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEE
T ss_pred CeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC-CEE
Confidence 999999999887655432 123688899999999998 899
Q ss_pred EEEeCCCeEEEEEcC-CcEEEEecCCc-----------------------------------------------------
Q psy8448 297 VVCNKTNTVVIMNMQ-GQIVRSLSSGK----------------------------------------------------- 322 (482)
Q Consensus 297 ~~~~~d~~i~i~d~~-~~~~~~~~~~~----------------------------------------------------- 322 (482)
++++.|+.|++||+. +.....+...+
T Consensus 340 ~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (611)
T 1nr0_A 340 FSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAV 419 (611)
T ss_dssp EEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEE
T ss_pred EEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEE
Confidence 999999999999984 43322211000
Q ss_pred --------------------------ccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccc
Q psy8448 323 --------------------------REGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGV 376 (482)
Q Consensus 323 --------------------------~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 376 (482)
.+...+.+++|+|||++|++|+.|+.|++|++..... ..+.. ....+.
T Consensus 420 s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~-----~~~~~-~~h~~~ 493 (611)
T 1nr0_A 420 SADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV-----SEVKT-IVHPAE 493 (611)
T ss_dssp CTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE-----EEEEE-EECSSC
T ss_pred eCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCce-----eeeec-cCCCCc
Confidence 0123466788888888888888888888777653110 00000 111111
Q ss_pred eeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCc--ceec
Q psy8448 377 SLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHE--PEVH 454 (482)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h 454 (482)
......++++. .++++..|..++.|+... . +.+... +.+|
T Consensus 494 v~~v~fspdg~--~las~s~d~~v~~w~~~~-------------------------~-----------~~~~~~~~~~~H 535 (611)
T 1nr0_A 494 ITSVAFSNNGA--FLVATDQSRKVIPYSVAN-------------------------N-----------FELAHTNSWTFH 535 (611)
T ss_dssp EEEEEECTTSS--EEEEEETTSCEEEEEGGG-------------------------T-----------TEESCCCCCCCC
T ss_pred eEEEEECCCCC--EEEEEcCCCCEEEEEcCC-------------------------C-----------Cceeeeeeeeec
Confidence 11222344443 244555555555543211 0 111112 3459
Q ss_pred ccceeeccccCCcceEEEEecCceeecC
Q psy8448 455 EKLVIGLTHHPHQNLLGTYSEDGLLRFS 482 (482)
Q Consensus 455 ~~~v~~~~~sp~~~~l~s~~~Dg~i~iW 482 (482)
...|++++|+|||++||||+.||+|+||
T Consensus 536 ~~~V~~v~fspdg~~lasgs~D~~v~lW 563 (611)
T 1nr0_A 536 TAKVACVSWSPDNVRLATGSLDNSVIVW 563 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ccceeEEEECCCCCEEEEEECCCcEEEE
Confidence 9999999999999999999999999999
No 7
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=6.5e-45 Score=332.05 Aligned_cols=291 Identities=28% Similarity=0.516 Sum_probs=253.7
Q ss_pred ceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC
Q psy8448 92 SKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS 171 (482)
Q Consensus 92 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d 171 (482)
....+.+|.+.|++++|+|++++|++|+.||.|++|++.+++....+. +|...|.+++|+|++++|++++.|
T Consensus 15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~--------~h~~~v~~~~~~~~~~~l~s~~~d 86 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--------GHKLGISDVAWSSDSNLLVSASDD 86 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC--------CCSSCEEEEEECTTSSEEEEEETT
T ss_pred eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhc--------cCCCceEEEEEcCCCCEEEEECCC
Confidence 344556999999999999999999999999999999998887655443 467899999999999999999999
Q ss_pred CcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEE
Q psy8448 172 GKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVL 251 (482)
Q Consensus 172 g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~ 251 (482)
+.|++||+++++.+..+ ..|...|.+++|+|++++|++++.|+.|++||+++++.+..+..|..+|.+++|+|++++|+
T Consensus 87 ~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 165 (312)
T 4ery_A 87 KTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 165 (312)
T ss_dssp SEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred CEEEEEECCCCcEEEEE-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEE
Confidence 99999999999998888 68999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEE
Q psy8448 252 SASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLC 330 (482)
Q Consensus 252 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~ 330 (482)
+++.||.|++||+++++....+.. .+..++..++|+|++ .++++++.|+.|++||+ +++.+..+..+......+..
T Consensus 166 ~~~~d~~i~~wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 242 (312)
T 4ery_A 166 SSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNG-KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 242 (312)
T ss_dssp EEETTSCEEEEETTTCCEEEEECC--SSCCCEEEEEECTTS-SEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCE
T ss_pred EEeCCCcEEEEECCCCceeeEEec--cCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEE
Confidence 999999999999999987776642 556789999999998 89999999999999999 57777777665433333444
Q ss_pred EEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCc
Q psy8448 331 CTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPE 410 (482)
Q Consensus 331 ~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 410 (482)
....+++.+|++|+.||.|+ +|+..++ ++
T Consensus 243 ~~~~~~~~~l~sg~~dg~i~------------------vwd~~~~-------------------------------~~-- 271 (312)
T 4ery_A 243 NFSVTGGKWIVSGSEDNLVY------------------IWNLQTK-------------------------------EI-- 271 (312)
T ss_dssp EEECSSSCEEEECCTTSCEE------------------EEETTTC-------------------------------CE--
T ss_pred EEEeCCCcEEEEECCCCEEE------------------EEECCCc-------------------------------hh--
Confidence 44457889999999999999 5555555 22
Q ss_pred hhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEe--cCceeecC
Q psy8448 411 KKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYS--EDGLLRFS 482 (482)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~--~Dg~i~iW 482 (482)
.. .+.+|.+.|.+++|+|++++|++++ .||+|++|
T Consensus 272 ---------------------------~~----------~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W 308 (312)
T 4ery_A 272 ---------------------------VQ----------KLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308 (312)
T ss_dssp ---------------------------EE----------EECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEE
T ss_pred ---------------------------hh----------hhhccCCcEEEEeecCcCCceEEEEccCCccEEEe
Confidence 33 6678999999999999999999987 69999999
No 8
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.4e-46 Score=341.92 Aligned_cols=290 Identities=20% Similarity=0.269 Sum_probs=235.0
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccc---ccccccccccccEEEEEEcCCCCEEEEEeCCCcE
Q psy8448 98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKY---QAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKV 174 (482)
Q Consensus 98 ~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~---~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i 174 (482)
.|...|.+++|+|||++|++++ |+++++||............ ........|+..|.+++|+|++ .|++|+.||.|
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v 105 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAV 105 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEE
Confidence 5677899999999999999887 77888887431111000000 0111122356789999999985 68899999999
Q ss_pred EEEEcCCCeEeEEe---ecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCC-CEE
Q psy8448 175 KIWKIATGQCLRKL---EKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADG-HSV 250 (482)
Q Consensus 175 ~iwd~~~~~~~~~~---~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l 250 (482)
++||+.+++.+... ..+|...|.+++|+|++++|++|+.|+.|++||+++++++..+.+|...|.+++|+|++ .+|
T Consensus 106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l 185 (344)
T 4gqb_B 106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185 (344)
T ss_dssp EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEE
T ss_pred EEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCce
Confidence 99999988755433 24799999999999999999999999999999999999999999999999999999987 478
Q ss_pred EEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEE
Q psy8448 251 LSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFL 329 (482)
Q Consensus 251 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~ 329 (482)
++++.|+.|++||++++++...+... .+...+.+++|+|++..++++|+.|+.|++||+ .++.+..+..+ ...|+
T Consensus 186 ~s~s~D~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h---~~~v~ 261 (344)
T 4gqb_B 186 LSCSEDNRILLWDTRCPKPASQIGCS-APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVH---SQCVT 261 (344)
T ss_dssp EEEETTSCEEEEETTSSSCEEECC-----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECC---SSCEE
T ss_pred eeeccccccccccccccceeeeeecc-eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCC---CCCEE
Confidence 99999999999999999887776421 455678999999988789999999999999999 57777777765 78899
Q ss_pred EEEEcCCC-CEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCC
Q psy8448 330 CCTTSPRG-EWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKL 408 (482)
Q Consensus 330 ~~~~~~~g-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 408 (482)
+++|+|++ ++|++|+.|+.|+ +||..++ ++
T Consensus 262 ~v~fsp~g~~~lasgs~D~~i~------------------vwd~~~~-------------------------------~~ 292 (344)
T 4gqb_B 262 GLVFSPHSVPFLASLSEDCSLA------------------VLDSSLS-------------------------------EL 292 (344)
T ss_dssp EEEECSSSSCCEEEEETTSCEE------------------EECTTCC-------------------------------EE
T ss_pred EEEEccCCCeEEEEEeCCCeEE------------------EEECCCC-------------------------------cE
Confidence 99999998 5799999999999 5555555 11
Q ss_pred CchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcc-eEEEEecCceeecC
Q psy8448 409 PEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQN-LLGTYSEDGLLRFS 482 (482)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~~~Dg~i~iW 482 (482)
. .+.+|.+.|++++|+|+++ +|+|||.||+|++|
T Consensus 293 -----------------------------~-----------~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w 327 (344)
T 4gqb_B 293 -----------------------------F-----------RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHH 327 (344)
T ss_dssp -----------------------------E-----------EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred -----------------------------E-----------EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEE
Confidence 1 4568999999999999986 57799999999998
No 9
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.3e-44 Score=330.61 Aligned_cols=296 Identities=18% Similarity=0.311 Sum_probs=246.7
Q ss_pred eeeecCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC
Q psy8448 93 KQIKFGSKSHVECARFSPDG-QYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS 171 (482)
Q Consensus 93 ~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d 171 (482)
...+.+|.+.|++++|+|++ ++|++|+.|++|++|++....... ......+.+|...|.+++|+|++++|++|+.|
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~---~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D 86 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKF---GVPVRSFKGHSHIVQDCTLTADGAYALSASWD 86 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEE---EEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccc---cccceEEeCCcccEEEEEECCCCCEEEEEeCC
Confidence 34556999999999999965 899999999999999986533211 11233456789999999999999999999999
Q ss_pred CcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCC-----
Q psy8448 172 GKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTAD----- 246 (482)
Q Consensus 172 g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~----- 246 (482)
++|++||+.+++.+..+ .+|...|.+++|+|++.+|++|+.|+.|++||++ ++++..+.+|...|.++.|.|.
T Consensus 87 ~~v~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~ 164 (319)
T 3frx_A 87 KTLRLWDVATGETYQRF-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADD 164 (319)
T ss_dssp SEEEEEETTTTEEEEEE-ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC-----
T ss_pred CEEEEEECCCCCeeEEE-ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCC
Confidence 99999999999999888 6899999999999999999999999999999996 5677888899999999999985
Q ss_pred -CCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCccc
Q psy8448 247 -GHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKRE 324 (482)
Q Consensus 247 -~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~ 324 (482)
+..+++++.|+.|++||+++.+....+. +|...|.+++|+|++ .++++++.|+.|++||+ .++.+..+..
T Consensus 165 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~---~h~~~v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~~~~~~~~~~---- 236 (319)
T 3frx_A 165 DSVTIISAGNDKMVKAWNLNQFQIEADFI---GHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAAKKAMYTLSA---- 236 (319)
T ss_dssp -CCEEEEEETTSCEEEEETTTTEEEEEEC---CCCSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEEEEEEEC----
T ss_pred CccEEEEEeCCCEEEEEECCcchhheeec---CCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEecC----
Confidence 4589999999999999999988877776 899999999999998 89999999999999999 5666666654
Q ss_pred CcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhcccc
Q psy8448 325 GGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQ 404 (482)
Q Consensus 325 ~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (482)
...+.+++|+|++.+|++++.++ +++|+++ .+.....+..
T Consensus 237 ~~~v~~~~~sp~~~~la~~~~~~-i~v~~~~------------------~~~~~~~~~~--------------------- 276 (319)
T 3frx_A 237 QDEVFSLAFSPNRYWLAAATATG-IKVFSLD------------------PQYLVDDLRP--------------------- 276 (319)
T ss_dssp CSCEEEEEECSSSSEEEEEETTE-EEEEEET------------------TEEEEEEECC---------------------
T ss_pred CCcEEEEEEcCCCCEEEEEcCCC-cEEEEeC------------------cCeeeeccCc---------------------
Confidence 45799999999999999887654 8866543 2211111100
Q ss_pred ccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448 405 SLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS 482 (482)
Q Consensus 405 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW 482 (482)
.. .. ....|...+.+++|+|||++|++|+.||.|+||
T Consensus 277 --~~-----------------------------~~----------~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vW 313 (319)
T 3frx_A 277 --EF-----------------------------AG----------YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313 (319)
T ss_dssp --CC-----------------------------TT----------CCGGGCCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred --cc-----------------------------cc----------cccCcCcceeEEEECCCCCEEEEeecCceEEEE
Confidence 00 00 233567779999999999999999999999999
No 10
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.8e-45 Score=337.90 Aligned_cols=247 Identities=19% Similarity=0.215 Sum_probs=209.3
Q ss_pred ecCCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcE
Q psy8448 96 KFGSKS-HVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKV 174 (482)
Q Consensus 96 ~~~h~~-~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i 174 (482)
+.+|.. .|.+++|+|+|++||+|+.|++|+|||+.++....... ...+|...|.+++|+|++++|++|+.|+.+
T Consensus 11 ~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~-----~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v 85 (345)
T 3fm0_A 11 VPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSV-----LSEGHQRTVRKVAWSPCGNYLASASFDATT 85 (345)
T ss_dssp ECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEE-----ECSSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeee-----eccccCCcEEEEEECCCCCEEEEEECCCcE
Confidence 348887 99999999999999999999999999998775432211 123578999999999999999999999999
Q ss_pred EEEEcCCCe--EeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCc---eEEEeeccccceeEEEEcCCCCE
Q psy8448 175 KIWKIATGQ--CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGK---MLKEFRGHSSFVNDITFTADGHS 249 (482)
Q Consensus 175 ~iwd~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~i~~l~~~~~~~~ 249 (482)
++||+..+. .+..+ .+|...|.+++|+|++++|++++.|+.|++||++++. ++..+.+|...|.+++|+|++++
T Consensus 86 ~iw~~~~~~~~~~~~~-~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 164 (345)
T 3fm0_A 86 CIWKKNQDDFECVTTL-EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL 164 (345)
T ss_dssp EEEEECCC-EEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSC
T ss_pred EEEEccCCCeEEEEEc-cCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCE
Confidence 999988764 45556 6899999999999999999999999999999998764 45677889999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCce--eeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-C-C-------------
Q psy8448 250 VLSASSDGTVKMWNLKTTEC--TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-Q-G------------- 312 (482)
Q Consensus 250 l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~-~------------- 312 (482)
|++++.|+.|++||.++++. ...+. +|...|.+++|+|++ .+|++++.|+.|++|+. . +
T Consensus 165 l~s~s~d~~i~~w~~~~~~~~~~~~~~---~h~~~v~~l~~sp~g-~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~ 240 (345)
T 3fm0_A 165 LASASYDDTVKLYREEEDDWVCCATLE---GHESTVWSLAFDPSG-QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPS 240 (345)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEEC---CCSSCEEEEEECTTS-SEEEEEETTSCEEEEEEECTTCTTCCCCC---CE
T ss_pred EEEEeCCCcEEEEEecCCCEEEEEEec---CCCCceEEEEECCCC-CEEEEEeCCCeEEEeccccCCCCccceeeccCCc
Confidence 99999999999999988753 34444 889999999999998 89999999999999996 1 1
Q ss_pred -cEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448 313 -QIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLI 354 (482)
Q Consensus 313 -~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~ 354 (482)
+.+..+... |...|.+++|+|++..|++++.|+.|++|+.
T Consensus 241 ~~~~~~~~~~--h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~ 281 (345)
T 3fm0_A 241 WKCICTLSGF--HSRTIYDIAWCQLTGALATACGDDAIRVFQE 281 (345)
T ss_dssp EEEEEEECSS--CSSCEEEEEECTTTCCEEEEETTSCEEEEEE
T ss_pred cceeEEecCC--CCCcEEEEEEecCCCEEEEEeCCCeEEEEEe
Confidence 122333332 3678999999999999999999999996654
No 11
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=8.6e-46 Score=343.41 Aligned_cols=288 Identities=20% Similarity=0.297 Sum_probs=235.6
Q ss_pred cCCCCcEEEEEEcCCCCEEEEEeC------CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC
Q psy8448 97 FGSKSHVECARFSPDGQYLITGSV------DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ 170 (482)
Q Consensus 97 ~~h~~~v~~~~~s~~~~~l~s~~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~ 170 (482)
..|...|++++|||||++||+|+. |+.|++|+..++.....+.. ...+|...|++++|+|++. +++++.
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~----~~~~~~~~V~~~~~s~d~~-~l~~s~ 113 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCT----AGVQTEAGVTDVAWVSEKG-ILVASD 113 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCS----EEEECSSCEEEEEEETTTE-EEEEET
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEec----ccCCCCCCEEEEEEcCCCC-EEEEEC
Confidence 379999999999999999999997 78899999887765433322 2334778999999999975 567788
Q ss_pred CCcEEEEEcCCCeEeEE---eecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCC
Q psy8448 171 SGKVKIWKIATGQCLRK---LEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADG 247 (482)
Q Consensus 171 dg~i~iwd~~~~~~~~~---~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~ 247 (482)
||+|++||+.+++.... ...+|...|.+++|+|++++|++|+.|+.|++||+++++.+..+.+|...|.+++|+|++
T Consensus 114 dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~ 193 (357)
T 4g56_B 114 SGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGK 193 (357)
T ss_dssp TSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTC
T ss_pred CCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCC
Confidence 99999999988765432 124789999999999999999999999999999999999999999999999999999987
Q ss_pred C-EEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccC
Q psy8448 248 H-SVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREG 325 (482)
Q Consensus 248 ~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~ 325 (482)
. .+++++.||.|++||++++++...+.. ..+...+.+++|+|++..++++++.|+.|++||+ +++.+..+..+ .
T Consensus 194 ~~~~~s~~~dg~v~~wd~~~~~~~~~~~~-~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~---~ 269 (357)
T 4g56_B 194 DTIFLSCGEDGRILLWDTRKPKPATRIDF-CASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVH---S 269 (357)
T ss_dssp SSCEEEEETTSCEEECCTTSSSCBCBCCC-TTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCC---S
T ss_pred CceeeeeccCCceEEEECCCCceeeeeee-ccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEecc---c
Confidence 5 789999999999999999887665542 2566789999999998789999999999999999 56777777655 7
Q ss_pred cCEEEEEEcCCC-CEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhcccc
Q psy8448 326 GDFLCCTTSPRG-EWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQ 404 (482)
Q Consensus 326 ~~v~~~~~~~~g-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (482)
..|++++|+|++ ++|++|+.|+.|+ +|+..++
T Consensus 270 ~~v~~l~~sp~~~~~lasgs~D~~i~------------------iwd~~~~----------------------------- 302 (357)
T 4g56_B 270 QNITGLAYSYHSSPFLASISEDCTVA------------------VLDADFS----------------------------- 302 (357)
T ss_dssp SCEEEEEECSSSSCCEEEEETTSCEE------------------EECTTSC-----------------------------
T ss_pred eeEEEEEEcCCCCCEEEEEeCCCEEE------------------EEECCCC-----------------------------
Confidence 789999999997 5799999999999 5555555
Q ss_pred ccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccC-CcceEEEEecCceeecC
Q psy8448 405 SLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHP-HQNLLGTYSEDGLLRFS 482 (482)
Q Consensus 405 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~s~~~Dg~i~iW 482 (482)
++ . ...+|.+.|++++|+| |+++|||||.||+|++|
T Consensus 303 --~~-----------------------------~-----------~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW 339 (357)
T 4g56_B 303 --EV-----------------------------F-----------RDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHH 339 (357)
T ss_dssp --EE-----------------------------E-----------EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred --cE-----------------------------e-----------EECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEE
Confidence 11 1 2337999999999999 79999999999999998
No 12
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.8e-45 Score=344.80 Aligned_cols=293 Identities=20% Similarity=0.298 Sum_probs=245.7
Q ss_pred eeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCC
Q psy8448 93 KQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSG 172 (482)
Q Consensus 93 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg 172 (482)
...+.+|.+.|++++|+|++++|++|+.||+|+|||+.+++....+. .|...|.+++|+|++++|++|+.|+
T Consensus 59 ~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~--------~h~~~v~~~~~s~~g~~las~~~d~ 130 (380)
T 3iz6_a 59 CRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIK--------LHCPWVMECAFAPNGQSVACGGLDS 130 (380)
T ss_dssp EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE--------CCCTTCCCCEECTTSSEEEECCSSS
T ss_pred eecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEe--------cCCCCEEEEEECCCCCEEEEeeCCC
Confidence 34566999999999999999999999999999999999887665544 3568899999999999999999999
Q ss_pred cEEEEEcCCCe-------EeEEeecccCCCeEEEEEccC-CCEEEEEECCCeEEEEeCCCCceEEEe-----ecccccee
Q psy8448 173 KVKIWKIATGQ-------CLRKLEKAHSLGVTCIQFSRD-NSQILTASFDTYVRIHGLKSGKMLKEF-----RGHSSFVN 239 (482)
Q Consensus 173 ~i~iwd~~~~~-------~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~i~ 239 (482)
.+++||+.+.. ....+ .+|...+.++.|.|+ +..|++|+.|+.|++||+++++.+..+ .+|...|.
T Consensus 131 ~v~iw~~~~~~~~~~~~~~~~~~-~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~ 209 (380)
T 3iz6_a 131 ACSIFNLSSQADRDGNMPVSRVL-TGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL 209 (380)
T ss_dssp CCEEEECCCCSSCCCSSTTCCBC-CCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEE
T ss_pred cEEEEECCCCccccCCccceeec-cCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeE
Confidence 99999986532 12233 689999999999996 457999999999999999999988877 57899999
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEECCC-CceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEE
Q psy8448 240 DITFTA-DGHSVLSASSDGTVKMWNLKT-TECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVR 316 (482)
Q Consensus 240 ~l~~~~-~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~ 316 (482)
+++|++ ++++|++|+.|+.|++||++. .+.+..+. +|...|.+++|+|++ .+|++++.|++|++||+ .++.+.
T Consensus 210 ~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~---~h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~~~~~~~~ 285 (380)
T 3iz6_a 210 SLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYH---GHEGDINSVKFFPDG-QRFGTGSDDGTCRLFDMRTGHQLQ 285 (380)
T ss_dssp EEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEEC---CCSSCCCEEEECTTS-SEEEEECSSSCEEEEETTTTEEEE
T ss_pred EEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEEC---CcCCCeEEEEEecCC-CeEEEEcCCCeEEEEECCCCcEEE
Confidence 999987 889999999999999999984 45666665 899999999999998 89999999999999999 567776
Q ss_pred EecCCcc----cCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccC
Q psy8448 317 SLSSGKR----EGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADIN 392 (482)
Q Consensus 317 ~~~~~~~----~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (482)
.+..+.. +...+.+++|+|+|++|++|+.||.|++ |+..+++....+
T Consensus 286 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~v------------------wd~~~~~~~~~~----------- 336 (380)
T 3iz6_a 286 VYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYV------------------WDTLLAEMVLNL----------- 336 (380)
T ss_dssp EECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEE------------------EETTTCCEEEEE-----------
T ss_pred EecccccccccccCceEEEEECCCCCEEEEEECCCCEEE------------------EECCCCceEEEE-----------
Confidence 6654321 1234889999999999999999999995 454444111110
Q ss_pred CCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEE
Q psy8448 393 NGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGT 472 (482)
Q Consensus 393 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s 472 (482)
.. ...+|.+.|++++|+|||++|+|
T Consensus 337 ---------------------------------------------~~----------~~~~h~~~v~~l~~s~dg~~l~s 361 (380)
T 3iz6_a 337 ---------------------------------------------GT----------LQNSHEGRISCLGLSSDGSALCT 361 (380)
T ss_dssp ---------------------------------------------CC----------SCSSCCCCCCEEEECSSSSEEEE
T ss_pred ---------------------------------------------ec----------ccCCCCCceEEEEECCCCCEEEE
Confidence 00 23579999999999999999999
Q ss_pred EecCceeecC
Q psy8448 473 YSEDGLLRFS 482 (482)
Q Consensus 473 ~~~Dg~i~iW 482 (482)
|+.||+|+||
T Consensus 362 gs~D~~i~iW 371 (380)
T 3iz6_a 362 GSWDKNLKIW 371 (380)
T ss_dssp ECTTSCEEEE
T ss_pred eeCCCCEEEE
Confidence 9999999999
No 13
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.6e-44 Score=359.33 Aligned_cols=388 Identities=17% Similarity=0.218 Sum_probs=283.3
Q ss_pred cccceeeChhHHHHHHHh---Hhhhhhc-------------------cCCCCCCceeeccC------Ccccccccccccc
Q psy8448 36 VGEVSVVPPSRLLALLGQ---ALKWQQH-------------------QGLLPPGTTIDLFR------GKAAMKDQEEEKY 87 (482)
Q Consensus 36 ~~~~~~~p~~~l~~~~~~---~~~~~~~-------------------~~~~~~g~~~~~~~------~~~~~~~~~~~~~ 87 (482)
+..++++|++++++..+. ..-|+.. ..+.|+|..++... +.+.+|+...
T Consensus 62 v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~--- 138 (611)
T 1nr0_A 62 TTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT--- 138 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC---
T ss_pred eEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCC---
Confidence 346778888887765432 1124321 12235565554432 2455665321
Q ss_pred ccccceeeecCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEE
Q psy8448 88 PTQLSKQIKFGSKSHVECARFSPDGQ-YLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLA 166 (482)
Q Consensus 88 ~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~ 166 (482)
. ...+.+|...|++++|+|+++ .|++|+.|++|++||..+++.... +.+|...|.+++|+|++++|+
T Consensus 139 ---~-~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~--------l~~H~~~V~~v~fspdg~~la 206 (611)
T 1nr0_A 139 ---S-NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKST--------FGEHTKFVHSVRYNPDGSLFA 206 (611)
T ss_dssp ---B-CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEE--------ECCCSSCEEEEEECTTSSEEE
T ss_pred ---C-cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeee--------eccccCceEEEEECCCCCEEE
Confidence 1 123459999999999999987 599999999999999887665443 345789999999999999999
Q ss_pred EEeCCCcEEEEEcCCCeEeEEeec------ccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEE----------
Q psy8448 167 SGSQSGKVKIWKIATGQCLRKLEK------AHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKE---------- 230 (482)
Q Consensus 167 ~~~~dg~i~iwd~~~~~~~~~~~~------~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---------- 230 (482)
+++.|++|++||+.+++....+.. +|...|.+++|+|++++|++++.|+.|++||+++++.+..
T Consensus 207 s~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~ 286 (611)
T 1nr0_A 207 STGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQ 286 (611)
T ss_dssp EEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGC
T ss_pred EEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccce
Confidence 999999999999999988887733 6999999999999999999999999999999988765433
Q ss_pred ---------------------------------eeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeec--
Q psy8448 231 ---------------------------------FRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKS-- 275 (482)
Q Consensus 231 ---------------------------------~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-- 275 (482)
+.+|...|.+++|+|++++|++++.|+.|++||+.+++....+..
T Consensus 287 ~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h 366 (611)
T 1nr0_A 287 QLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVH 366 (611)
T ss_dssp EEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSC
T ss_pred eEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCC
Confidence 347889999999999999999999999999999987654332200
Q ss_pred -------------------------------------------c-----------C-----------------------C
Q psy8448 276 -------------------------------------------L-----------G-----------------------A 278 (482)
Q Consensus 276 -------------------------------------------~-----------~-----------------------~ 278 (482)
. . .
T Consensus 367 ~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~ 446 (611)
T 1nr0_A 367 ATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVP 446 (611)
T ss_dssp SSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEE
T ss_pred cceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeee
Confidence 0 0 0
Q ss_pred CccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhh
Q psy8448 279 SDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYL 358 (482)
Q Consensus 279 ~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~ 358 (482)
+...+.+++|+|++ .++++++.|+.|++||+.+..+..... ..|...|.+++|+|+|++|++++.|+.|++|++....
T Consensus 447 ~~~~v~~va~spdg-~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~ 524 (611)
T 1nr0_A 447 ISYNSSCVALSNDK-QFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF 524 (611)
T ss_dssp CSSCEEEEEECTTS-CEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT
T ss_pred cCCCceEEEEeCCC-CEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC
Confidence 12346789999998 899999999999999996544322222 3347889999999999999999999999988875311
Q ss_pred hhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhcc
Q psy8448 359 KESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLR 438 (482)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (482)
... ....+...++.......++++. .+++++.|+.++.|+.... ... .
T Consensus 525 ~~~----~~~~~~~H~~~V~~v~fspdg~--~lasgs~D~~v~lW~~~~~-------------------------~~~-~ 572 (611)
T 1nr0_A 525 ELA----HTNSWTFHTAKVACVSWSPDNV--RLATGSLDNSVIVWNMNKP-------------------------SDH-P 572 (611)
T ss_dssp EES----CCCCCCCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTCT-------------------------TSC-C
T ss_pred cee----eeeeeeecccceeEEEECCCCC--EEEEEECCCcEEEEECCCc-------------------------ccc-c
Confidence 000 0001111222222223445543 4667777888877743111 000 1
Q ss_pred ccCcccccccCcceec-ccceeeccccCCcceEEEEecCceeecC
Q psy8448 439 QTDPMIFMKQHEPEVH-EKLVIGLTHHPHQNLLGTYSEDGLLRFS 482 (482)
Q Consensus 439 ~~~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~l~s~~~Dg~i~iW 482 (482)
...+.+| ...|++++|+|+++ |+|++.||+|++|
T Consensus 573 ---------~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW 607 (611)
T 1nr0_A 573 ---------IIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFW 607 (611)
T ss_dssp ---------EEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEE
T ss_pred ---------chhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEE
Confidence 0155689 89999999999998 9999999999999
No 14
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3e-43 Score=331.24 Aligned_cols=290 Identities=21% Similarity=0.309 Sum_probs=243.7
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccccc----------ccccccccEEEEEEcCCCCEEEE
Q psy8448 98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQD----------NFMLMEEAVMSLAYSRDSEMLAS 167 (482)
Q Consensus 98 ~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~----------~~~~h~~~i~~l~~~~~~~~l~~ 167 (482)
+|.+.|++++|+|+|++||+|+ ++.+++|++.+++....+..+... ....+...|.+++|+|++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 7999999999999999999987 789999999999877655433210 00112345999999999999999
Q ss_pred EeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcC-C
Q psy8448 168 GSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTA-D 246 (482)
Q Consensus 168 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~-~ 246 (482)
|+.|+.|++||+.+++....+ .+|...|.+++|+|++.+|++++.|+.|++||+++++....+. +...+.+++|+| +
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~ 218 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMIL-QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGD 218 (393)
T ss_dssp EETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTT
T ss_pred EcCCCeEEEEECCCCcEEEEE-ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCC
Confidence 999999999999999988888 7899999999999999999999999999999999999887776 567799999999 8
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeeeec----cCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCC----------
Q psy8448 247 GHSVLSASSDGTVKMWNLKTTECTSTFKS----LGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQG---------- 312 (482)
Q Consensus 247 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~---------- 312 (482)
+++|++++.|+.|++||+++++.+..+.. ..+|...|.+++|+|++ .++++++.|+.|++||+..
T Consensus 219 ~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~~~~~ 297 (393)
T 1erj_A 219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG-QSVVSGSLDRSVKLWNLQNANNKSDSKTP 297 (393)
T ss_dssp CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS-SEEEEEETTSEEEEEEC------------
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEECCCCCCcccccCC
Confidence 99999999999999999999887766631 13688899999999998 8999999999999999842
Q ss_pred ---cEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeeccccccccee
Q psy8448 313 ---QIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIA 389 (482)
Q Consensus 313 ---~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (482)
.....+.. |...|.+++|+|++.+|++|+.|+.|+ +|+..++
T Consensus 298 ~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~sgs~D~~v~------------------iwd~~~~-------------- 342 (393)
T 1erj_A 298 NSGTCEVTYIG---HKDFVLSVATTQNDEYILSGSKDRGVL------------------FWDKKSG-------------- 342 (393)
T ss_dssp ---CEEEEEEC---CSSCEEEEEECGGGCEEEEEETTSEEE------------------EEETTTC--------------
T ss_pred CCCcceEEEec---ccCcEEEEEECCCCCEEEEEeCCCeEE------------------EEECCCC--------------
Confidence 12233333 367899999999999999999999999 5666555
Q ss_pred ccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccC----
Q psy8448 390 DINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHP---- 465 (482)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp---- 465 (482)
+. .. .+.+|.+.|.+++|+|
T Consensus 343 -----------------~~-----------------------------~~----------~l~~h~~~v~~v~~~~~~~~ 366 (393)
T 1erj_A 343 -----------------NP-----------------------------LL----------MLQGHRNSVISVAVANGSSL 366 (393)
T ss_dssp -----------------CE-----------------------------EE----------EEECCSSCEEEEEECSSCTT
T ss_pred -----------------eE-----------------------------EE----------EECCCCCCEEEEEecCCcCc
Confidence 22 22 6678999999998875
Q ss_pred --CcceEEEEecCceeecC
Q psy8448 466 --HQNLLGTYSEDGLLRFS 482 (482)
Q Consensus 466 --~~~~l~s~~~Dg~i~iW 482 (482)
++++||||+.||+|+||
T Consensus 367 ~p~~~~l~sgs~Dg~i~iW 385 (393)
T 1erj_A 367 GPEYNVFATGSGDCKARIW 385 (393)
T ss_dssp CTTCEEEEEEETTSEEEEE
T ss_pred CCCCCEEEEECCCCcEEEC
Confidence 78899999999999999
No 15
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=5.7e-43 Score=323.26 Aligned_cols=300 Identities=20% Similarity=0.269 Sum_probs=239.1
Q ss_pred eeeecCCCCcEEEEEE-----cC-CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEE
Q psy8448 93 KQIKFGSKSHVECARF-----SP-DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLA 166 (482)
Q Consensus 93 ~~~~~~h~~~v~~~~~-----s~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~ 166 (482)
...+.+|++.|++++| ++ ++++|++|+.|++|++||+.+.+..... ......+.+|...|.+++|+|++.+++
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~-~~~~~~l~~h~~~V~~~~~~~~~~~l~ 92 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYF-GIPHKALTGHNHFVSDLALSQENCFAI 92 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBS-EEEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccccc-ccccchhccCCCceEEEEECCCCCEEE
Confidence 3456699999999999 77 9999999999999999999865422111 122345667899999999999999999
Q ss_pred EEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEee---ccccceeEEEE
Q psy8448 167 SGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFR---GHSSFVNDITF 243 (482)
Q Consensus 167 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~i~~l~~ 243 (482)
+++.|++|++||+++++.+..+ .+|...|.+++|+|++++|++++.|+.|++||+... ...... .|...|.+++|
T Consensus 93 s~s~D~~v~lwd~~~~~~~~~~-~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 93 SSSWDKTLRLWDLRTGTTYKRF-VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp EEETTSEEEEEETTSSCEEEEE-ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEE
T ss_pred EEcCCCcEEEEECCCCcEEEEE-cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeee
Confidence 9999999999999999998888 689999999999999999999999999999999743 333333 68889999999
Q ss_pred cCCC----------CEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CC
Q psy8448 244 TADG----------HSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QG 312 (482)
Q Consensus 244 ~~~~----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~ 312 (482)
+|++ .+|++++.|+.|++||. ..+....+. .|...|.+++|+|++ .+|++++.|+.|++||+ ..
T Consensus 171 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~---~h~~~v~~~~~s~~g-~~l~sgs~dg~v~iwd~~~~ 245 (343)
T 2xzm_R 171 SPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFK---AHESNVNHLSISPNG-KYIATGGKDKKLLIWDILNL 245 (343)
T ss_dssp CCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEE---CCSSCEEEEEECTTS-SEEEEEETTCEEEEEESSCC
T ss_pred ccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEc---CccccceEEEECCCC-CEEEEEcCCCeEEEEECCCC
Confidence 9987 78999999999999994 455555665 888999999999999 89999999999999999 33
Q ss_pred -cEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceee--ccccccccee
Q psy8448 313 -QIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLN--TVDSVDGFIA 389 (482)
Q Consensus 313 -~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 389 (482)
.....+.. ...|.+++|+|++.+++++ .|+.+++|++ .++.... .+...
T Consensus 246 ~~~~~~~~~----~~~v~~v~~sp~~~~la~~-~d~~v~iw~~------------------~~~~~~~~~~~~~~----- 297 (343)
T 2xzm_R 246 TYPQREFDA----GSTINQIAFNPKLQWVAVG-TDQGVKIFNL------------------MTQSKAPVCTIEAE----- 297 (343)
T ss_dssp SSCSEEEEC----SSCEEEEEECSSSCEEEEE-ESSCEEEEES------------------SSCCSCSEEECCCC-----
T ss_pred cccceeecC----CCcEEEEEECCCCCEEEEE-CCCCEEEEEe------------------CCCCCCceEEeecC-----
Confidence 23333322 4569999999999888755 5778996554 3331110 00000
Q ss_pred ccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcce
Q psy8448 390 DINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNL 469 (482)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~ 469 (482)
.+ .... ...+|...|++++|+|+|++
T Consensus 298 -----------------~~---------------------------~~~~----------~~~~~~~~v~~~~~sp~g~~ 323 (343)
T 2xzm_R 298 -----------------PI---------------------------TKAE----------GQKGKNPQCTSLAWNALGKK 323 (343)
T ss_dssp -----------------SG---------------------------GGBT----------TBCCSCCCEEEEEECSSSCC
T ss_pred -----------------cc---------------------------hhhh----------hhcCCCCceEEEEECCCCCe
Confidence 00 0011 34578889999999999999
Q ss_pred EEEEecCceeecC
Q psy8448 470 LGTYSEDGLLRFS 482 (482)
Q Consensus 470 l~s~~~Dg~i~iW 482 (482)
|++|+.||+|++|
T Consensus 324 l~sg~~Dg~v~~w 336 (343)
T 2xzm_R 324 LFAGFTDGVIRTF 336 (343)
T ss_dssp EEEEETTSEEEEE
T ss_pred EEEecCCceEEEE
Confidence 9999999999998
No 16
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-43 Score=319.88 Aligned_cols=244 Identities=23% Similarity=0.233 Sum_probs=198.4
Q ss_pred eecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCce--eeccccccccccccccccEEEEEEcCCCCEEEEEeCCC
Q psy8448 95 IKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKI--RKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSG 172 (482)
Q Consensus 95 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg 172 (482)
.+.+|.+.|.+++|+|+ +||+|+.|++|++||+.++.. ...+. ..+|...|.+++|+|++++|++++.|+
T Consensus 9 ~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~------~~~h~~~v~~v~~sp~~~~las~s~D~ 80 (330)
T 2hes_X 9 SLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLD------ETAHKKAIRSVAWRPHTSLLAAGSFDS 80 (330)
T ss_dssp EEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEEC------TTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred eeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEe------cCCccCCEEEEEECCCCCEEEEEeCCC
Confidence 34599999999999988 999999999999999987532 11110 123788999999999999999999999
Q ss_pred cEEEEEcCC-------CeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCC----CceEEEeeccccceeEE
Q psy8448 173 KVKIWKIAT-------GQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKS----GKMLKEFRGHSSFVNDI 241 (482)
Q Consensus 173 ~i~iwd~~~-------~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~i~~l 241 (482)
.|++||+.. .+.+..+ .+|...|.+++|+|++++|++|+.|+.|++||++. .+++..+.+|...|.++
T Consensus 81 ~v~iw~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v 159 (330)
T 2hes_X 81 TVSIWAKEESADRTFEMDLLAII-EGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHV 159 (330)
T ss_dssp CEEEEEC-------CCCEEEEEE-C----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEE
T ss_pred cEEEEEcccCcCccccceeEEEE-cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEE
Confidence 999999853 2345555 68999999999999999999999999999999953 24677888999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCC--ceeeeeeccCCCccceeEEEEcCCC-CCEEEEEeCCCeEEEEEcCC------
Q psy8448 242 TFTADGHSVLSASSDGTVKMWNLKTT--ECTSTFKSLGASDIAVNSIHLLPKN-TEHFVVCNKTNTVVIMNMQG------ 312 (482)
Q Consensus 242 ~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~v~~i~~~~~~-~~~l~~~~~d~~i~i~d~~~------ 312 (482)
+|+|++++|++++.|+.|++||..++ +++..+. +|...|.+++|+|++ ...+++++.|+.|++||+..
T Consensus 160 ~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~ 236 (330)
T 2hes_X 160 IWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN---GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQ 236 (330)
T ss_dssp EECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC---CCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSC
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEcc---CCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccc
Confidence 99999999999999999999998876 4555555 899999999999983 26899999999999999842
Q ss_pred ---cEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448 313 ---QIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRL 353 (482)
Q Consensus 313 ---~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~ 353 (482)
.....+.. .|...|.+++|++++ +|++++.||.|++|+
T Consensus 237 ~~~~~~~~~~~--~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~ 277 (330)
T 2hes_X 237 QEWVCEAILPD--VHKRQVYNVAWGFNG-LIASVGADGVLAVYE 277 (330)
T ss_dssp EEEEEEEECCS--CCSSCEEEEEECTTS-CEEEEETTSCEEEEE
T ss_pred ceeEEeeeccc--ccccceEEEEEcCCC-EEEEEeCCCEEEEEE
Confidence 22333332 147889999999765 899999999999554
No 17
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=6.6e-42 Score=339.45 Aligned_cols=346 Identities=26% Similarity=0.367 Sum_probs=274.3
Q ss_pred CCCCCceeec--cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccc
Q psy8448 63 LLPPGTTIDL--FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKY 140 (482)
Q Consensus 63 ~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 140 (482)
+.|+|..+.. .++.+.+|+... +.. ..+.+|...|++++|+|+++.|++++.|+.|++||.. ++....
T Consensus 229 ~s~dg~~l~~~~~d~~i~~w~~~~-----~~~-~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~--- 298 (577)
T 2ymu_A 229 FSPDGQTIASASDDKTVKLWNRNG-----QLL-QTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQT--- 298 (577)
T ss_dssp ECTTSSCEEEEETTSCEEEECTTS-----CEE-EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEE---
T ss_pred ECCCCCEEEEEeCCCEEEEEeCCC-----CEE-EEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEE---
Confidence 3456655443 355677777432 222 3345899999999999999999999999999999964 333332
Q ss_pred ccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEE
Q psy8448 141 QAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIH 220 (482)
Q Consensus 141 ~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~ 220 (482)
+.+|...|.+++|+|++++|++++.|+.|++||+... .+..+ ..|...+.+++|+|++++|++++.|+.|++|
T Consensus 299 -----~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~ 371 (577)
T 2ymu_A 299 -----LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-HLQTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLW 371 (577)
T ss_dssp -----ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred -----EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-eeEEE-eCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 3456889999999999999999999999999997654 45555 6789999999999999999999999999999
Q ss_pred eCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEe
Q psy8448 221 GLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCN 300 (482)
Q Consensus 221 d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~ 300 (482)
|. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||. +++....+. .|...|.+++|+|++ .++++++
T Consensus 372 ~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~---~~~~~v~~~~~s~d~-~~l~~~~ 445 (577)
T 2ymu_A 372 NR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT---GHSSSVWGVAFSPDD-QTIASAS 445 (577)
T ss_dssp ET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEE---CCSSCEEEEEECTTS-SEEEEEE
T ss_pred cC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEec---CCCCCeEEEEECCCC-CEEEEEc
Confidence 95 67888899999999999999999999999999999999995 566666666 889999999999998 8999999
Q ss_pred CCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeec
Q psy8448 301 KTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNT 380 (482)
Q Consensus 301 ~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (482)
.|+.|++||.+++.+..+..+ ...|.+++|+|++++|++++.|+.|++|+... ..++.+....+.....
T Consensus 446 ~d~~v~~w~~~~~~~~~~~~~---~~~v~~~~~spd~~~las~~~d~~i~iw~~~~--------~~~~~~~~h~~~v~~l 514 (577)
T 2ymu_A 446 DDKTVKLWNRNGQLLQTLTGH---SSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--------QLLQTLTGHSSSVRGV 514 (577)
T ss_dssp TTSEEEEEETTSCEEEEEECC---SSCEEEEEECTTSCEEEEEETTSEEEEEETTS--------CEEEEEECCSSCEEEE
T ss_pred CCCEEEEEECCCCEEEEEcCC---CCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC--------CEEEEEeCCCCCEEEE
Confidence 999999999998888888765 77899999999999999999999999776321 1111222222221122
Q ss_pred ccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceee
Q psy8448 381 VDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIG 460 (482)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 460 (482)
..++++. .+++++.|+.++.|+. ++.++..+.+|.+.|++
T Consensus 515 ~~s~dg~--~l~s~~~dg~v~lwd~--------------------------------------~~~~~~~~~~h~~~v~~ 554 (577)
T 2ymu_A 515 AFSPDGQ--TIASASDDKTVKLWNR--------------------------------------NGQLLQTLTGHSSSVWG 554 (577)
T ss_dssp EECTTSS--CEEEEETTSEEEEECT--------------------------------------TSCEEEEEECCSSCEEE
T ss_pred EEcCCCC--EEEEEECcCEEEEEeC--------------------------------------CCCEEEEEcCCCCCEEE
Confidence 2333332 2444555555555421 23334488899999999
Q ss_pred ccccCCcceEEEEecCceeecC
Q psy8448 461 LTHHPHQNLLGTYSEDGLLRFS 482 (482)
Q Consensus 461 ~~~sp~~~~l~s~~~Dg~i~iW 482 (482)
++|+|||++|+|++.||+|++|
T Consensus 555 ~~fs~dg~~l~s~~~D~~i~~W 576 (577)
T 2ymu_A 555 VAFSPDGQTIASASSDKTVKLW 576 (577)
T ss_dssp EEECTTSSCEEEEETTSCEEEE
T ss_pred EEEcCCCCEEEEEeCCCEEEEe
Confidence 9999999999999999999999
No 18
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.4e-41 Score=313.44 Aligned_cols=284 Identities=17% Similarity=0.250 Sum_probs=245.7
Q ss_pred cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEE
Q psy8448 97 FGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKI 176 (482)
Q Consensus 97 ~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~i 176 (482)
.+|...|++++|+|++++|++++ ||.|++||+.+++....+... ....|...|.+++|+|++++|++++.||.|++
T Consensus 48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 123 (337)
T 1gxr_A 48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQL---DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI 123 (337)
T ss_dssp ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEE---ECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecc---cccCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence 38999999999999999999999 999999999887644332211 11246789999999999999999999999999
Q ss_pred EEcCCCe--EeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEe
Q psy8448 177 WKIATGQ--CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSAS 254 (482)
Q Consensus 177 wd~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~ 254 (482)
||+.+++ ....+ ..|...+.+++|+|+++++++++.||.|++||+++++.+..+..|...|.+++|+|++++|++++
T Consensus 124 ~d~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 202 (337)
T 1gxr_A 124 WDLAAPTPRIKAEL-TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG 202 (337)
T ss_dssp EECCCC--EEEEEE-ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EECCCCCcceeeec-ccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEe
Confidence 9998877 44445 57888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEc
Q psy8448 255 SDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTS 334 (482)
Q Consensus 255 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~ 334 (482)
.||.|++||+++++....+ .+...+.+++|+|++ .++++++.++.|++||+.......+..+ ...+.+++|+
T Consensus 203 ~dg~i~~~d~~~~~~~~~~----~~~~~v~~~~~s~~~-~~l~~~~~~~~i~~~~~~~~~~~~~~~~---~~~v~~~~~~ 274 (337)
T 1gxr_A 203 LDNTVRSWDLREGRQLQQH----DFTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNKPDKYQLHLH---ESCVLSLKFA 274 (337)
T ss_dssp TTSEEEEEETTTTEEEEEE----ECSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSSCEEEECCC---SSCEEEEEEC
T ss_pred cCCcEEEEECCCCceEeee----cCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCCeEEEcCC---ccceeEEEEC
Confidence 9999999999999887776 456789999999998 8999999999999999965555555544 7789999999
Q ss_pred CCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhh
Q psy8448 335 PRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLI 414 (482)
Q Consensus 335 ~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 414 (482)
|++++|++++.||.++ +|+..++ +.
T Consensus 275 ~~~~~l~~~~~dg~i~------------------~~~~~~~-------------------------------~~------ 299 (337)
T 1gxr_A 275 YCGKWFVSTGKDNLLN------------------AWRTPYG-------------------------------AS------ 299 (337)
T ss_dssp TTSSEEEEEETTSEEE------------------EEETTTC-------------------------------CE------
T ss_pred CCCCEEEEecCCCcEE------------------EEECCCC-------------------------------eE------
Confidence 9999999999999999 5555555 11
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448 415 DLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS 482 (482)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW 482 (482)
. ....|...|.+++|+|++++|++++.||.|++|
T Consensus 300 -----------------------~-----------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 333 (337)
T 1gxr_A 300 -----------------------I-----------FQSKESSSVLSCDISVDDKYIVTGSGDKKATVY 333 (337)
T ss_dssp -----------------------E-----------EEEECSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred -----------------------E-----------EEecCCCcEEEEEECCCCCEEEEecCCCeEEEE
Confidence 1 223577889999999999999999999999998
No 19
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.3e-41 Score=310.60 Aligned_cols=264 Identities=21% Similarity=0.345 Sum_probs=236.5
Q ss_pred cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccccccccccccc
Q psy8448 73 FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEA 152 (482)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~ 152 (482)
.++.+.+|+...... .....+.+|...|.+++|+|++.++++++.|++|++||+.+++.+..+.. |...
T Consensus 56 ~D~~v~vW~~~~~~~---~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~--------~~~~ 124 (321)
T 3ow8_A 56 LDDLVKVWKWRDERL---DLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDA--------GPVD 124 (321)
T ss_dssp TTSCEEEEEEETTEE---EEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC--------CTTC
T ss_pred CCCCEEEEECCCCCe---eeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeC--------CCcc
Confidence 467788888754332 12233569999999999999999999999999999999999887665543 3567
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEee
Q psy8448 153 VMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFR 232 (482)
Q Consensus 153 i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 232 (482)
+.+++|+|++++|++++.||.|++||+++++....+ ..+...+.+++|+|++++|++|+.|+.|++||+++++.+..+.
T Consensus 125 ~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~-~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~ 203 (321)
T 3ow8_A 125 AWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSL-DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLE 203 (321)
T ss_dssp CCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEE-ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEe-cCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc
Confidence 889999999999999999999999999999888887 5788899999999999999999999999999999999999999
Q ss_pred ccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-C
Q psy8448 233 GHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-Q 311 (482)
Q Consensus 233 ~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~ 311 (482)
+|..+|.+++|+|++++|++++.|+.|++||+++++....+. +|...|.+++|+|++ .+|++++.|+.|++||+ +
T Consensus 204 ~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~h~~~v~~~~~sp~~-~~l~s~s~D~~v~iwd~~~ 279 (321)
T 3ow8_A 204 GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS---GHASWVLNVAFCPDD-THFVSSSSDKSVKVWDVGT 279 (321)
T ss_dssp CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEEC---CCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT
T ss_pred ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEc---CCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCC
Confidence 999999999999999999999999999999999998888776 889999999999998 89999999999999999 5
Q ss_pred CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448 312 GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ 355 (482)
Q Consensus 312 ~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~ 355 (482)
++.+..+..+ ...|.+++|+|++++|++++.||.|++|+.+
T Consensus 280 ~~~~~~~~~h---~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 280 RTCVHTFFDH---QDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TEEEEEECCC---SSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CEEEEEEcCC---CCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 7777777765 7789999999999999999999999988753
No 20
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=8e-41 Score=308.86 Aligned_cols=297 Identities=19% Similarity=0.308 Sum_probs=243.4
Q ss_pred eeecCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCC
Q psy8448 94 QIKFGSKSHVECARFSPD-GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSG 172 (482)
Q Consensus 94 ~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg 172 (482)
..+.||++.|++|+|+|+ +++||||+.||+|+|||+.+.+.... .....+.+|...|.+++|+|++++|++++.|+
T Consensus 32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~---~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~ 108 (340)
T 4aow_A 32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG---IPQRALRGHSHFVSDVVISSDGQFALSGSWDG 108 (340)
T ss_dssp EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE---EEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc---eeeEEEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence 446699999999999997 68999999999999999987654322 12334567899999999999999999999999
Q ss_pred cEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceE-EEeeccccceeEEEEcCCC--CE
Q psy8448 173 KVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKML-KEFRGHSSFVNDITFTADG--HS 249 (482)
Q Consensus 173 ~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~i~~l~~~~~~--~~ 249 (482)
.|++|+.......... ..+...+..+.+++++.+|++++.|+.+++||+...... ....+|...+.+++|++++ .+
T Consensus 109 ~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 187 (340)
T 4aow_A 109 TLRLWDLTTGTTTRRF-VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI 187 (340)
T ss_dssp EEEEEETTTTEEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCE
T ss_pred cceEEeecccceeeee-cCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcE
Confidence 9999999988877777 577888999999999999999999999999999766543 3456789999999998864 57
Q ss_pred EEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCE
Q psy8448 250 VLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDF 328 (482)
Q Consensus 250 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v 328 (482)
+++++.|+.|++||+++++....+. +|..+|.+++|+|++ .+|++++.|+.|++||+ ..+.+..+.. ...+
T Consensus 188 ~~s~~~d~~i~i~d~~~~~~~~~~~---~h~~~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~----~~~v 259 (340)
T 4aow_A 188 IVSCGWDKLVKVWNLANCKLKTNHI---GHTGYLNTVTVSPDG-SLCASGGKDGQAMLWDLNEGKHLYTLDG----GDII 259 (340)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEEC---CCSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEEEEEEEC----SSCE
T ss_pred EEEEcCCCEEEEEECCCCceeeEec---CCCCcEEEEEECCCC-CEEEEEeCCCeEEEEEeccCceeeeecC----CceE
Confidence 8899999999999999999888877 889999999999998 89999999999999999 5666666654 4579
Q ss_pred EEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCC
Q psy8448 329 LCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKL 408 (482)
Q Consensus 329 ~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 408 (482)
.+++|+|++.++ +++.|+.|++|++ .++.....+... ..
T Consensus 260 ~~~~~~~~~~~~-~~~~d~~i~iwd~------------------~~~~~~~~~~~~----------------------~~ 298 (340)
T 4aow_A 260 NALCFSPNRYWL-CAATGPSIKIWDL------------------EGKIIVDELKQE----------------------VI 298 (340)
T ss_dssp EEEEECSSSSEE-EEEETTEEEEEET------------------TTTEEEEEECCC------------------------
T ss_pred EeeecCCCCcee-eccCCCEEEEEEC------------------CCCeEEEecccc----------------------ce
Confidence 999999988655 5667999996554 333222111110 00
Q ss_pred CchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448 409 PEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS 482 (482)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW 482 (482)
.. ...+|...|++++|+|||++||||+.||+|+||
T Consensus 299 -----------------------------~~----------~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW 333 (340)
T 4aow_A 299 -----------------------------ST----------SSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVW 333 (340)
T ss_dssp --------------------------------------------CCCCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred -----------------------------ee----------eccCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 11 456799999999999999999999999999999
No 21
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.6e-41 Score=319.63 Aligned_cols=269 Identities=20% Similarity=0.321 Sum_probs=238.9
Q ss_pred CCCceeec--cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccc
Q psy8448 65 PPGTTIDL--FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQA 142 (482)
Q Consensus 65 ~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 142 (482)
|++..+.. .++.+.+|+....... ..+.+|.+.|++++|+|++++|++|+.|++|++||+.+++.+..+.
T Consensus 118 p~~~~l~s~s~Dg~i~vwd~~~~~~~-----~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~--- 189 (410)
T 1vyh_C 118 PVFSVMVSASEDATIKVWDYETGDFE-----RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH--- 189 (410)
T ss_dssp SSSSEEEEEESSSCEEEEETTTCCCC-----EEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCC---
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEE-----EEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEc---
Confidence 45554444 3567888887654332 3345899999999999999999999999999999999877665543
Q ss_pred ccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeC
Q psy8448 143 QDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGL 222 (482)
Q Consensus 143 ~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~ 222 (482)
+|...|.+++|+|++++|++|+.|+.|++||++++..+..+ .+|...|.+++|+|++.+|++|+.|+.|++||+
T Consensus 190 -----~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~ 263 (410)
T 1vyh_C 190 -----GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF-TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 263 (410)
T ss_dssp -----CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred -----CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE-eCCCccEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 46789999999999999999999999999999999999888 689999999999999999999999999999999
Q ss_pred CCCceEEEeeccccceeEEEEcCC--------------------CCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccc
Q psy8448 223 KSGKMLKEFRGHSSFVNDITFTAD--------------------GHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIA 282 (482)
Q Consensus 223 ~~~~~~~~~~~~~~~i~~l~~~~~--------------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 282 (482)
+++++...+.+|...|.+++|+|+ +.+|++|+.|+.|++||+++++++..+. +|...
T Consensus 264 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~---~h~~~ 340 (410)
T 1vyh_C 264 ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV---GHDNW 340 (410)
T ss_dssp TTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE---CCSSC
T ss_pred CCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEE---CCCCc
Confidence 999999999999999999999996 6789999999999999999999888887 88999
Q ss_pred eeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448 283 VNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLI 354 (482)
Q Consensus 283 v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~ 354 (482)
|.+++|+|++ .++++++.|+.|++||+ .++.+..+..+ ...|++++|+|++.+|++|+.||.|++|+.
T Consensus 341 v~~v~~~~~g-~~l~s~s~D~~i~vwd~~~~~~~~~~~~h---~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 341 VRGVLFHSGG-KFILSCADDKTLRVWDYKNKRCMKTLNAH---EHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEEEEECSSS-SCEEEEETTTEEEEECCTTSCCCEEEECC---SSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceEEEEcCC---CCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 9999999998 89999999999999999 56777777655 778999999999999999999999998864
No 22
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.8e-41 Score=309.62 Aligned_cols=247 Identities=16% Similarity=0.236 Sum_probs=212.7
Q ss_pred cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEE
Q psy8448 97 FGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKI 176 (482)
Q Consensus 97 ~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~i 176 (482)
..|...|++++|+|++ .|++|+.||+|+|||+.+++....... ...+|.+.|++++|+|++++|++|+.|++|++
T Consensus 79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~----~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~i 153 (344)
T 4gqb_B 79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKF----CKYEHDDIVSTVSVLSSGTQAVSGSKDICIKV 153 (344)
T ss_dssp EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEE----EEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeec----cccCCCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence 3577889999999985 688999999999999999876544332 23458899999999999999999999999999
Q ss_pred EEcCCCeEeEEeecccCCCeEEEEEccCCC-EEEEEECCCeEEEEeCCCCceEEEee--ccccceeEEEEcCC-CCEEEE
Q psy8448 177 WKIATGQCLRKLEKAHSLGVTCIQFSRDNS-QILTASFDTYVRIHGLKSGKMLKEFR--GHSSFVNDITFTAD-GHSVLS 252 (482)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~l~~~~~-~~~l~~ 252 (482)
||+.+++.+..+ .+|...|.+++|+|++. +|++++.|+.|++||+++++....+. .+...+.+++|+|+ +++|++
T Consensus 154 wd~~~~~~~~~~-~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s 232 (344)
T 4gqb_B 154 WDLAQQVVLSSY-RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVF 232 (344)
T ss_dssp EETTTTEEEEEE-CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEE
T ss_pred EECCCCcEEEEE-cCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEE
Confidence 999999999998 78999999999999874 78899999999999999999888764 45667999999994 578899
Q ss_pred EeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEE
Q psy8448 253 ASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCT 332 (482)
Q Consensus 253 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~ 332 (482)
|+.||.|++||+++++++..+. +|...|.+++|+|++..+|++++.|++|++||++...+..+..| ...|++++
T Consensus 233 g~~dg~v~~wd~~~~~~~~~~~---~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H---~~~V~~v~ 306 (344)
T 4gqb_B 233 GDENGTVSLVDTKSTSCVLSSA---VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAH---RDFVRDAT 306 (344)
T ss_dssp EETTSEEEEEESCC--CCEEEE---CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCC---SSCEEEEE
T ss_pred eccCCcEEEEECCCCcEEEEEc---CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCC---CCCEEEEE
Confidence 9999999999999999988887 89999999999999877899999999999999965555555544 78999999
Q ss_pred EcCCCC-EEEEEeCCcEEEEEeeh
Q psy8448 333 TSPRGE-WIYCVGEDMVLVVRLIQ 355 (482)
Q Consensus 333 ~~~~g~-~l~~~~~dg~i~iw~~~ 355 (482)
|+|+++ +|++++.||.|++|+++
T Consensus 307 ~sp~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 307 WSPLNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp ECSSSTTEEEEEETTSCEEEEECC
T ss_pred EeCCCCeEEEEEcCCCeEEEEECC
Confidence 999986 56789999999977654
No 23
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-41 Score=311.98 Aligned_cols=297 Identities=14% Similarity=0.239 Sum_probs=248.5
Q ss_pred eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCc
Q psy8448 94 QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGK 173 (482)
Q Consensus 94 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~ 173 (482)
..+.+|.+.|++++|+|++++|++|+.||.|++||+.+++....+. +|...|.+++|+|++++|++++.||.
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--------~h~~~v~~~~~~~~~~~l~s~~~dg~ 97 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLD--------GHTGTIWSIDVDCFTKYCVTGSADYS 97 (369)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEEC--------CCSSCEEEEEECTTSSEEEEEETTTE
T ss_pred EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhh--------hcCCcEEEEEEcCCCCEEEEEeCCCe
Confidence 4456999999999999999999999999999999999887766554 35789999999999999999999999
Q ss_pred EEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECC-----CeEEEEeCCCCc-----------eEEEeecccc-
Q psy8448 174 VKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFD-----TYVRIHGLKSGK-----------MLKEFRGHSS- 236 (482)
Q Consensus 174 i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-----g~i~i~d~~~~~-----------~~~~~~~~~~- 236 (482)
|++||+.+++.+..+. +...+.+++|+|++.++++++.+ +.|++||++... ....+..|..
T Consensus 98 i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (369)
T 3zwl_B 98 IKLWDVSNGQCVATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL 175 (369)
T ss_dssp EEEEETTTCCEEEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC
T ss_pred EEEEECCCCcEEEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCc
Confidence 9999999999988884 88899999999999999999999 999999997654 3344455665
Q ss_pred -ceeEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCc
Q psy8448 237 -FVNDITFTADGHSVLSASSDGTVKMWNLKT-TECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQ 313 (482)
Q Consensus 237 -~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~ 313 (482)
.+.+++|+|++++|++++.||.|++||+++ .+....+. .|...|.+++|+|++ .++++++.|+.|++||+ .++
T Consensus 176 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~ 251 (369)
T 3zwl_B 176 DAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSID---LHEKSISDMQFSPDL-TYFITSSRDTNSFLVDVSTLQ 251 (369)
T ss_dssp CCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEE---CCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCC
T ss_pred cceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe---cCCCceeEEEECCCC-CEEEEecCCceEEEEECCCCc
Confidence 899999999999999999999999999998 67777776 788899999999998 89999999999999999 567
Q ss_pred EEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCC
Q psy8448 314 IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINN 393 (482)
Q Consensus 314 ~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (482)
.+..+.. ...+.+++|+|+++++++++.++...+|..... .....+.+|+..++
T Consensus 252 ~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~i~~~d~~~~------------------ 305 (369)
T 3zwl_B 252 VLKKYET----DCPLNTAVITPLKEFIILGGGQEAKDVTTTSAN----EGKFEARFYHKIFE------------------ 305 (369)
T ss_dssp EEEEEEC----SSCEEEEEECSSSSEEEEEECCC-----------------CEEEEEETTTC------------------
T ss_pred eeeeecC----CCCceeEEecCCCceEEEeecCCCceEEEEecC----CCcceeEEEecCCC------------------
Confidence 7776662 678999999999999999999997766544311 11123346666655
Q ss_pred CcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEE
Q psy8448 394 GHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTY 473 (482)
Q Consensus 394 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~ 473 (482)
+. .. .+.+|...|++++|+|++++|+++
T Consensus 306 -------------~~-----------------------------~~----------~~~~~~~~v~~~~~s~~~~~l~s~ 333 (369)
T 3zwl_B 306 -------------EE-----------------------------IG----------RVQGHFGPLNTVAISPQGTSYASG 333 (369)
T ss_dssp -------------CE-----------------------------EE----------EEECCSSCEEEEEECTTSSEEEEE
T ss_pred -------------cc-----------------------------hh----------heecccCcEEEEEECCCCCEEEEE
Confidence 22 22 677899999999999999999999
Q ss_pred ecCceeecC
Q psy8448 474 SEDGLLRFS 482 (482)
Q Consensus 474 ~~Dg~i~iW 482 (482)
+.||.|+||
T Consensus 334 ~~dg~v~iw 342 (369)
T 3zwl_B 334 GEDGFIRLH 342 (369)
T ss_dssp ETTSEEEEE
T ss_pred cCCCeEEEE
Confidence 999999998
No 24
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.3e-40 Score=326.44 Aligned_cols=345 Identities=27% Similarity=0.364 Sum_probs=271.1
Q ss_pred CCCCceeec--cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccc
Q psy8448 64 LPPGTTIDL--FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQ 141 (482)
Q Consensus 64 ~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 141 (482)
.|+|..+.. .++.+.+|+... +.. ....+|...|.+++|+|++++|++++.|+.|++||.. ++.+..
T Consensus 189 ~~~~~~l~~~~~d~~v~~w~~~~-----~~~-~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~~~---- 257 (577)
T 2ymu_A 189 SPDGQTIASASDDKTVKLWNRNG-----QLL-QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQT---- 257 (577)
T ss_dssp CTTSSCEEEEETTSEEEEECTTS-----CEE-EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEE----
T ss_pred cCCCCEEEEEcCCCEEEEEeCCC-----cEE-EEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEE----
Confidence 355554443 345667776432 222 2345899999999999999999999999999999964 443332
Q ss_pred cccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEe
Q psy8448 142 AQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHG 221 (482)
Q Consensus 142 ~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d 221 (482)
+.+|...|++++|+|+++.|++++.|+.|++||. +++....+ .+|...|.+++|+|+++.|++++.|+.|++||
T Consensus 258 ----~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~-~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~ 331 (577)
T 2ymu_A 258 ----LTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 331 (577)
T ss_dssp ----ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ----EecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEE-ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 3346789999999999999999999999999996 45666666 68999999999999999999999999999999
Q ss_pred CCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeC
Q psy8448 222 LKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK 301 (482)
Q Consensus 222 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~ 301 (482)
+. ++.+..+.+|...+.+++|+|++++|++++.|+.|++||. +++.+..+. .|...|.+++|+|++ .++++++.
T Consensus 332 ~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~---~~~~~v~~~~~s~dg-~~l~~~~~ 405 (577)
T 2ymu_A 332 RN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT---GHSSSVRGVAFSPDG-QTIASASD 405 (577)
T ss_dssp TT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEE---CCSSCEEEEEECTTS-SCEEEEET
T ss_pred CC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEec---CCCCCeEEEEECCCC-CEEEEEeC
Confidence 75 5566778889999999999999999999999999999995 566667666 788999999999999 88999999
Q ss_pred CCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecc
Q psy8448 302 TNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTV 381 (482)
Q Consensus 302 d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (482)
|+.|++||.+++.+..+..+ ...|.+++|+|++++|++++.|+.|++|+.... .+..+...........
T Consensus 406 d~~v~~~~~~~~~~~~~~~~---~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~--------~~~~~~~~~~~v~~~~ 474 (577)
T 2ymu_A 406 DKTVKLWNRNGQLLQTLTGH---SSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ--------LLQTLTGHSSSVRGVA 474 (577)
T ss_dssp TSEEEEECTTCCEEEEEECC---SSCEEEEEECTTSSEEEEEETTSEEEEEETTSC--------EEEEEECCSSCEEEEE
T ss_pred CCEEEEEeCCCCEEEEecCC---CCCeEEEEECCCCCEEEEEcCCCEEEEEECCCC--------EEEEEcCCCCCEEEEE
Confidence 99999999988888888765 778999999999999999999999998874311 1111111111111111
Q ss_pred cccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeec
Q psy8448 382 DSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGL 461 (482)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 461 (482)
.++++. .++.++.|..++.|+. ++.++..+.+|...|+++
T Consensus 475 ~spd~~--~las~~~d~~i~iw~~--------------------------------------~~~~~~~~~~h~~~v~~l 514 (577)
T 2ymu_A 475 FSPDGQ--TIASASDDKTVKLWNR--------------------------------------NGQLLQTLTGHSSSVRGV 514 (577)
T ss_dssp ECTTSC--EEEEEETTSEEEEEET--------------------------------------TSCEEEEEECCSSCEEEE
T ss_pred EcCCCC--EEEEEeCCCEEEEEcC--------------------------------------CCCEEEEEeCCCCCEEEE
Confidence 233332 2344455555544421 223334788999999999
Q ss_pred cccCCcceEEEEecCceeecC
Q psy8448 462 THHPHQNLLGTYSEDGLLRFS 482 (482)
Q Consensus 462 ~~sp~~~~l~s~~~Dg~i~iW 482 (482)
+|+|||++||+++.||.|+||
T Consensus 515 ~~s~dg~~l~s~~~dg~v~lw 535 (577)
T 2ymu_A 515 AFSPDGQTIASASDDKTVKLW 535 (577)
T ss_dssp EECTTSSCEEEEETTSEEEEE
T ss_pred EEcCCCCEEEEEECcCEEEEE
Confidence 999999999999999999998
No 25
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=6.1e-41 Score=304.11 Aligned_cols=245 Identities=21% Similarity=0.308 Sum_probs=215.3
Q ss_pred cccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCC
Q psy8448 144 DNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLK 223 (482)
Q Consensus 144 ~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~ 223 (482)
..+.+|.+.|++++|+|++++|++++.||.|++||+.++..+..+ ..|..+|.+++|+|++++|++|+.|+.|++||++
T Consensus 7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~ 85 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSI-QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN 85 (304)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEe-eccCCcEEEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 345678899999999999999999999999999999999998888 6889999999999999999999999999999999
Q ss_pred CCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCce-eeeeeccCCCccceeEEEEcCCCCCEEEEEeCC
Q psy8448 224 SGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTEC-TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT 302 (482)
Q Consensus 224 ~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d 302 (482)
+++.+..+.+|...|.+++|+|++++|++++.|++|++||++++.. ...+. +|...|.+++|+|.++.++++++.|
T Consensus 86 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~---~h~~~v~~v~~~p~~~~~l~sgs~D 162 (304)
T 2ynn_A 86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE---GHEHFVMCVAFNPKDPSTFASGCLD 162 (304)
T ss_dssp TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC---CCCSCEEEEEECTTCTTEEEEEETT
T ss_pred CCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhc---ccCCcEEEEEECCCCCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999998743 34444 8899999999999665899999999
Q ss_pred CeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcC--CCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceee
Q psy8448 303 NTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSP--RGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLN 379 (482)
Q Consensus 303 ~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~--~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (482)
+.|++||+ .+.....+..++ ...+..+.|+| ++.+|++|+.|+.|+ +|+..++
T Consensus 163 ~~v~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~s~s~D~~i~------------------iWd~~~~---- 218 (304)
T 2ynn_A 163 RTVKVWSLGQSTPNFTLTTGQ--ERGVNYVDYYPLPDKPYMITASDDLTIK------------------IWDYQTK---- 218 (304)
T ss_dssp SEEEEEETTCSSCSEEEECCC--TTCEEEEEECCSTTCCEEEEEETTSEEE------------------EEETTTT----
T ss_pred CeEEEEECCCCCccceeccCC--cCcEEEEEEEEcCCCCEEEEEcCCCeEE------------------EEeCCCC----
Confidence 99999999 444444444332 56788888876 788999999999999 5555555
Q ss_pred cccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceeccccee
Q psy8448 380 TVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVI 459 (482)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 459 (482)
+. .. .+.+|...|+
T Consensus 219 ---------------------------~~-----------------------------~~----------~~~~h~~~v~ 232 (304)
T 2ynn_A 219 ---------------------------SC-----------------------------VA----------TLEGHMSNVS 232 (304)
T ss_dssp ---------------------------EE-----------------------------EE----------EEECCSSCEE
T ss_pred ---------------------------cc-----------------------------ce----------eeCCCCCCEE
Confidence 11 22 6778999999
Q ss_pred eccccCCcceEEEEecCceeecC
Q psy8448 460 GLTHHPHQNLLGTYSEDGLLRFS 482 (482)
Q Consensus 460 ~~~~sp~~~~l~s~~~Dg~i~iW 482 (482)
+++|+|++++|+||+.||+|++|
T Consensus 233 ~~~~~p~~~~l~s~s~Dg~i~iW 255 (304)
T 2ynn_A 233 FAVFHPTLPIIISGSEDGTLKIW 255 (304)
T ss_dssp EEEECSSSSEEEEEETTSCEEEE
T ss_pred EEEECCCCCEEEEEcCCCeEEEE
Confidence 99999999999999999999999
No 26
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=6.9e-41 Score=308.84 Aligned_cols=274 Identities=16% Similarity=0.248 Sum_probs=234.1
Q ss_pred CCCCceeec--cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccc
Q psy8448 64 LPPGTTIDL--FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQ 141 (482)
Q Consensus 64 ~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 141 (482)
.|+|..+.. .++.+.+|+....... .....|...|.+++|+|++++|++|+.|+.|++|++.+++... .
T Consensus 64 s~d~~~l~s~s~Dg~v~iWd~~~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~----~ 134 (340)
T 1got_B 64 GTDSRLLLSASQDGKLIIWDSYTTNKV-----HAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV----R 134 (340)
T ss_dssp CTTSSEEEEEETTTEEEEEETTTCCEE-----EEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSC----E
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCCcc-----eEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcc----e
Confidence 355555443 4677888886544322 2234799999999999999999999999999999998764211 1
Q ss_pred cccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEe
Q psy8448 142 AQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHG 221 (482)
Q Consensus 142 ~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d 221 (482)
....+.+|...|.++.|++++. +++++.|+.|++||+.+++.+..+ .+|...|.+++|+|++.++++|+.|+.|++||
T Consensus 135 ~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd 212 (340)
T 1got_B 135 VSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212 (340)
T ss_dssp EEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEE-cCCCCceEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 2234556889999999998875 899999999999999999998888 68999999999999999999999999999999
Q ss_pred CCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeC
Q psy8448 222 LKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK 301 (482)
Q Consensus 222 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~ 301 (482)
++++++...+.+|...|.+++|+|++++|++++.||.|++||+++++.+..+.. ..+...|.+++|+|++ .++++++.
T Consensus 213 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~g-~~l~~g~~ 290 (340)
T 1got_B 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH-DNIICGITSVSFSKSG-RLLLAGYD 290 (340)
T ss_dssp TTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-TTCCSCEEEEEECTTS-SEEEEEET
T ss_pred CCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEcc-CCcccceEEEEECCCC-CEEEEECC
Confidence 999999999999999999999999999999999999999999999887766641 1334579999999999 89999999
Q ss_pred CCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448 302 TNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRL 353 (482)
Q Consensus 302 d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~ 353 (482)
|+.|++||. .++.+..+..| ...|.+++|+|+|.+|++|+.||.|+||+
T Consensus 291 d~~i~vwd~~~~~~~~~~~~h---~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 291 DFNCNVWDALKADRAGVLAGH---DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TSEEEEEETTTCCEEEEEECC---SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCeEEEEEcccCcEeeEeecC---CCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 999999999 67777777665 78999999999999999999999999774
No 27
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.7e-40 Score=335.69 Aligned_cols=248 Identities=23% Similarity=0.342 Sum_probs=211.5
Q ss_pred eeecCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCC
Q psy8448 94 QIKFGSKSHVECARFSPD-GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSG 172 (482)
Q Consensus 94 ~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg 172 (482)
..+.+|++.|++++|+|+ +++|++|+.||+|++|++.+..... ......+.+|...|.+++|+|++++|++|+.||
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~---~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg 452 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY---GVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG 452 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS---CEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc---ccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 345699999999999986 5799999999999999998654221 112234567899999999999999999999999
Q ss_pred cEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEe---eccccceeEEEEcCCC--
Q psy8448 173 KVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEF---RGHSSFVNDITFTADG-- 247 (482)
Q Consensus 173 ~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~~l~~~~~~-- 247 (482)
.|++||+.++.....+ .+|...|.+++|+|++++|++++.|+.|++||+......... .+|...|.+++|+|++
T Consensus 453 ~v~vwd~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 531 (694)
T 3dm0_A 453 ELRLWDLAAGVSTRRF-VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQ 531 (694)
T ss_dssp EEEEEETTTTEEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSS
T ss_pred cEEEEECCCCcceeEE-eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCc
Confidence 9999999999998888 689999999999999999999999999999998655433322 3688899999999986
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCc
Q psy8448 248 HSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGG 326 (482)
Q Consensus 248 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~ 326 (482)
..|++++.|+.|++||+++++....+. +|...|.+++|+|++ .++++++.|+.|++||+ +++.+..+.. ..
T Consensus 532 ~~l~s~s~d~~v~vwd~~~~~~~~~~~---~h~~~v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~~~~~~~~~~----~~ 603 (694)
T 3dm0_A 532 PTIVSASWDKTVKVWNLSNCKLRSTLA---GHTGYVSTVAVSPDG-SLCASGGKDGVVLLWDLAEGKKLYSLEA----NS 603 (694)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEEC---CCSSCEEEEEECTTS-SEEEEEETTSBCEEEETTTTEEEECCBC----SS
T ss_pred ceEEEEeCCCeEEEEECCCCcEEEEEc---CCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCceEEEecC----CC
Confidence 689999999999999999998888776 889999999999998 89999999999999999 5666655543 46
Q ss_pred CEEEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448 327 DFLCCTTSPRGEWIYCVGEDMVLVVRLI 354 (482)
Q Consensus 327 ~v~~~~~~~~g~~l~~~~~dg~i~iw~~ 354 (482)
.+.+++|+|++.+|++++ ++.|++|++
T Consensus 604 ~v~~~~~sp~~~~l~~~~-~~~i~iwd~ 630 (694)
T 3dm0_A 604 VIHALCFSPNRYWLCAAT-EHGIKIWDL 630 (694)
T ss_dssp CEEEEEECSSSSEEEEEE-TTEEEEEET
T ss_pred cEEEEEEcCCCcEEEEEc-CCCEEEEEC
Confidence 799999999999888766 455995544
No 28
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.3e-40 Score=308.67 Aligned_cols=271 Identities=15% Similarity=0.199 Sum_probs=216.2
Q ss_pred cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccccccccccccc
Q psy8448 73 FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEA 152 (482)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~ 152 (482)
+++.+.+|+.........+.. ...+|...|++++|+|++++ ++++.||+|+|||+.+++....... ...+|...
T Consensus 68 wd~~v~~~~~~~~~~~~~~~~-~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd~~~~~~~~~~~~----~~~~h~~~ 141 (357)
T 4g56_B 68 WGGSIWVFKDPEGAPNESLCT-AGVQTEAGVTDVAWVSEKGI-LVASDSGAVELWEILEKESLLVNKF----AKYEHDDI 141 (357)
T ss_dssp CCEEEEEESSCC---CGGGCS-EEEECSSCEEEEEEETTTEE-EEEETTSCEEEC--------CCCCE----EECCCSSC
T ss_pred ccCeEEEEECCCCCcceeEec-ccCCCCCCEEEEEEcCCCCE-EEEECCCEEEEeeccccceeEEEee----ccCCCCCC
Confidence 345566666544433333332 23479999999999999865 5577899999999998875443322 23357899
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCC-EEEEEECCCeEEEEeCCCCceEEEe
Q psy8448 153 VMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNS-QILTASFDTYVRIHGLKSGKMLKEF 231 (482)
Q Consensus 153 i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~ 231 (482)
|++++|+|++++|++++.|+.|++||+++++.+..+ ..|...|.+++|+|++. ++++++.|+.|++||++++++...+
T Consensus 142 V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~-~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~ 220 (357)
T 4g56_B 142 VKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSY-NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI 220 (357)
T ss_dssp EEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE-cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee
Confidence 999999999999999999999999999999999988 68999999999999874 7899999999999999998876655
Q ss_pred e--ccccceeEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEE
Q psy8448 232 R--GHSSFVNDITFTAD-GHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIM 308 (482)
Q Consensus 232 ~--~~~~~i~~l~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~ 308 (482)
. .+...+.+++|+|+ +.+|++|+.|+.|++||++++++...+. .+...|.+++|+|++..+|++++.|++|++|
T Consensus 221 ~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~---~~~~~v~~l~~sp~~~~~lasgs~D~~i~iw 297 (357)
T 4g56_B 221 DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA---VHSQNITGLAYSYHSSPFLASISEDCTVAVL 297 (357)
T ss_dssp CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC---CCSSCEEEEEECSSSSCCEEEEETTSCEEEE
T ss_pred eeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe---ccceeEEEEEEcCCCCCEEEEEeCCCEEEEE
Confidence 4 46778999999997 5688899999999999999998888877 8889999999999987789999999999999
Q ss_pred EcCCcEEEEecCCcccCcCEEEEEEcC-CCCEEEEEeCCcEEEEEeehh
Q psy8448 309 NMQGQIVRSLSSGKREGGDFLCCTTSP-RGEWIYCVGEDMVLVVRLIQQ 356 (482)
Q Consensus 309 d~~~~~~~~~~~~~~~~~~v~~~~~~~-~g~~l~~~~~dg~i~iw~~~~ 356 (482)
|++...+..... |...|++++|+| ++.+|++++.||.|++|+++.
T Consensus 298 d~~~~~~~~~~~---H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 298 DADFSEVFRDLS---HRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp CTTSCEEEEECC---CSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred ECCCCcEeEECC---CCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 995444434433 378999999998 799999999999999887753
No 29
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.6e-40 Score=309.40 Aligned_cols=244 Identities=11% Similarity=0.111 Sum_probs=211.6
Q ss_pred ecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCc--eeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCc
Q psy8448 96 KFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGK--IRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGK 173 (482)
Q Consensus 96 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~ 173 (482)
...|.++|++++|+|++++|++|+.|+.|++||+.+++ .... +.+|...|.+++|+|++++|++++.||.
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~--------~~~h~~~v~~~~~~~~~~~l~~~~~dg~ 75 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHE--------LKEHNGQVTGVDWAPDSNRIVTCGTDRN 75 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEE--------EECCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeee--------ecCCCCcccEEEEeCCCCEEEEEcCCCe
Confidence 34689999999999999999999999999999998876 3333 3346889999999999999999999999
Q ss_pred EEEEEcCCCeEeEEee-cccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCce---E-EEeeccccceeEEEEcCCCC
Q psy8448 174 VKIWKIATGQCLRKLE-KAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKM---L-KEFRGHSSFVNDITFTADGH 248 (482)
Q Consensus 174 i~iwd~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~-~~~~~~~~~i~~l~~~~~~~ 248 (482)
|++||+.+++....+. ..|...|.+++|+|++++|++++.|+.|++||++.++. . ....+|...|.+++|+|+++
T Consensus 76 i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 155 (372)
T 1k8k_C 76 AYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV 155 (372)
T ss_dssp EEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS
T ss_pred EEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC
Confidence 9999998887554432 56888999999999999999999999999999988763 2 33356889999999999999
Q ss_pred EEEEEeCCCcEEEEECC------------------CCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc
Q psy8448 249 SVLSASSDGTVKMWNLK------------------TTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM 310 (482)
Q Consensus 249 ~l~~~~~dg~i~i~d~~------------------~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~ 310 (482)
+|++++.||.|++||++ .++.+..+. .|...|.+++|+|++ .++++++.|+.|++||+
T Consensus 156 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~ 231 (372)
T 1k8k_C 156 LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS---SSCGWVHGVCFSANG-SRVAWVSHDSTVCLADA 231 (372)
T ss_dssp EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC---CCSSCEEEEEECSSS-SEEEEEETTTEEEEEEG
T ss_pred EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC---CCCCeEEEEEECCCC-CEEEEEeCCCEEEEEEC
Confidence 99999999999999954 566666665 788899999999998 89999999999999999
Q ss_pred -CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448 311 -QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ 355 (482)
Q Consensus 311 -~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~ 355 (482)
.++.+..+..+ ...+.+++|+|++.+|++| .|+.+++|++.
T Consensus 232 ~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~ 273 (372)
T 1k8k_C 232 DKKMAVATLASE---TLPLLAVTFITESSLVAAG-HDCFPVLFTYD 273 (372)
T ss_dssp GGTTEEEEEECS---SCCEEEEEEEETTEEEEEE-TTSSCEEEEEE
T ss_pred CCCceeEEEccC---CCCeEEEEEecCCCEEEEE-eCCeEEEEEcc
Confidence 68888888755 6789999999999988877 99999977654
No 30
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3.4e-41 Score=314.63 Aligned_cols=298 Identities=14% Similarity=0.184 Sum_probs=244.1
Q ss_pred cceeeecCCCCcEEEEEEcCC----CCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCC----C
Q psy8448 91 LSKQIKFGSKSHVECARFSPD----GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRD----S 162 (482)
Q Consensus 91 ~~~~~~~~h~~~v~~~~~s~~----~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~----~ 162 (482)
....+..+|.++|++++|+|+ ...+++++.++.|++||+.+++....+..... ..|...|++++|+|+ +
T Consensus 9 ~~~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~ 85 (366)
T 3k26_A 9 CVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVD---ADADENFYTCAWTYDSNTSH 85 (366)
T ss_dssp EEEEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEEC---SCTTCCEEEEEEEECTTTCC
T ss_pred EEEEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccc---cCCCCcEEEEEeccCCCCCC
Confidence 334667799999999999984 45566666678999999998876655543321 125688999999998 6
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEcc-CCCEEEEEECCCeEEEEeCCCCceEEEe---eccccce
Q psy8448 163 EMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSR-DNSQILTASFDTYVRIHGLKSGKMLKEF---RGHSSFV 238 (482)
Q Consensus 163 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i 238 (482)
++|++++.||.|++||+.+++.+..+ ..|...|.+++|+| ++.+|++++.||.|++||+++++.+..+ .+|...|
T Consensus 86 ~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v 164 (366)
T 3k26_A 86 PLLAVAGSRGIIRIINPITMQCIKHY-VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEV 164 (366)
T ss_dssp EEEEEEETTCEEEEECTTTCCEEEEE-ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCE
T ss_pred CEEEEecCCCEEEEEEchhceEeeee-cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCce
Confidence 79999999999999999999998888 68999999999999 8999999999999999999999998888 6899999
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeee-------------------------ccCCCccceeEEEEcCCCC
Q psy8448 239 NDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFK-------------------------SLGASDIAVNSIHLLPKNT 293 (482)
Q Consensus 239 ~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------------------------~~~~~~~~v~~i~~~~~~~ 293 (482)
.+++|+|++++|++++.||.|++||+++++....+. ....|...|.+++|+ +
T Consensus 165 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~- 241 (366)
T 3k26_A 165 LSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G- 241 (366)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T-
T ss_pred eEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C-
Confidence 999999999999999999999999999876543332 111388899999998 3
Q ss_pred CEEEEEeCCCeEEEEEcC-Cc--------------EEEEecCCcccCcCEEEEEEcCC--CCEEEEEeCCcEEEEEeehh
Q psy8448 294 EHFVVCNKTNTVVIMNMQ-GQ--------------IVRSLSSGKREGGDFLCCTTSPR--GEWIYCVGEDMVLVVRLIQQ 356 (482)
Q Consensus 294 ~~l~~~~~d~~i~i~d~~-~~--------------~~~~~~~~~~~~~~v~~~~~~~~--g~~l~~~~~dg~i~iw~~~~ 356 (482)
.++++++.|+.|++||+. +. .+..+..+ ...|.+++|+|+ +++|++|+.||.|++
T Consensus 242 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~~~l~~~~~dg~i~v----- 313 (366)
T 3k26_A 242 DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS---QCDIWYMRFSMDFWQKMLALGNQVGKLYV----- 313 (366)
T ss_dssp TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS---SCCSSCCCCEECTTSSEEEEECTTSCEEE-----
T ss_pred CEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc---CCcEEEEEEcCCCCCcEEEEEecCCcEEE-----
Confidence 799999999999999984 32 24444443 677899999999 999999999999995
Q ss_pred hhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhh
Q psy8448 357 YLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSL 436 (482)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (482)
|++.++..... .
T Consensus 314 -------------wd~~~~~~~~~---------------------------~---------------------------- 325 (366)
T 3k26_A 314 -------------WDLEVEDPHKA---------------------------K---------------------------- 325 (366)
T ss_dssp -------------EECCSSSGGGC---------------------------E----------------------------
T ss_pred -------------EECCCCCCccc---------------------------c----------------------------
Confidence 55544410000 0
Q ss_pred ccccCcccccccCcceec--ccceeeccccCCcceEEEEecCceeecC
Q psy8448 437 LRQTDPMIFMKQHEPEVH--EKLVIGLTHHPHQNLLGTYSEDGLLRFS 482 (482)
Q Consensus 437 ~~~~~~~~~~~~~~~~~h--~~~v~~~~~sp~~~~l~s~~~Dg~i~iW 482 (482)
.. .+.+| ...|++++|+|++++|++++.||.|++|
T Consensus 326 -~~----------~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 362 (366)
T 3k26_A 326 -CT----------TLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRW 362 (366)
T ss_dssp -EE----------EECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred -ce----------EEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEE
Confidence 11 44455 7889999999999999999999999998
No 31
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-41 Score=321.30 Aligned_cols=333 Identities=16% Similarity=0.258 Sum_probs=258.2
Q ss_pred CCCCCc-eeec--cCCccccccc----ccccc------ccccceeee-----cCCCCcEEEEEEcCCCCEEEEEeCCCeE
Q psy8448 63 LLPPGT-TIDL--FRGKAAMKDQ----EEEKY------PTQLSKQIK-----FGSKSHVECARFSPDGQYLITGSVDGFI 124 (482)
Q Consensus 63 ~~~~g~-~~~~--~~~~~~~~~~----~~~~~------~~~~~~~~~-----~~h~~~v~~~~~s~~~~~l~s~~~dg~v 124 (482)
+.|+|. .++. .++.+.+|+. ..... ...+..... .+|.+.|++++|+|++++|++|+.||.|
T Consensus 53 ~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 132 (425)
T 1r5m_A 53 WNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGEL 132 (425)
T ss_dssp ECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCE
T ss_pred ECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeE
Confidence 346666 4444 3577888888 44441 122221111 1268899999999999999999999999
Q ss_pred EEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCC---------
Q psy8448 125 EVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLG--------- 195 (482)
Q Consensus 125 ~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--------- 195 (482)
++|| .+++....+. .|...|.+++|+|++++|++++.||.|++||+.+++.+..+ ..+...
T Consensus 133 ~i~~-~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~ 202 (425)
T 1r5m_A 133 RLWN-KTGALLNVLN--------FHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHF-ELKETGGSSINAENH 202 (425)
T ss_dssp EEEE-TTSCEEEEEC--------CCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEE-CCC------------
T ss_pred EEEe-CCCCeeeecc--------CCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEe-eccccCccceeeccc
Confidence 9999 5555444333 46789999999999999999999999999999999988887 455555
Q ss_pred ------eEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q psy8448 196 ------VTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTEC 269 (482)
Q Consensus 196 ------v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 269 (482)
+.+++|+|++ .+++++.+|.|++||+++++.+..+..|...|.+++|+|++++|++++.|+.|++||+++++.
T Consensus 203 ~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 281 (425)
T 1r5m_A 203 SGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS 281 (425)
T ss_dssp ---CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSC
T ss_pred cCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCcc
Confidence 8999999875 688999999999999999999999999999999999999999999999999999999999888
Q ss_pred eeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcE
Q psy8448 270 TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMV 348 (482)
Q Consensus 270 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~ 348 (482)
...+. .|...|.+++|+|++ .+++++.|+.|++||+ .++.+..+..+ ...+.+++|+|++++|++++.||.
T Consensus 282 ~~~~~---~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~dg~ 353 (425)
T 1r5m_A 282 QNCFY---GHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTLLALSIVD---GVPIFAGRISQDGQKYAVAFMDGQ 353 (425)
T ss_dssp SEEEC---CCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTEEEEEEECT---TCCEEEEEECTTSSEEEEEETTSC
T ss_pred ceEec---CCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcEeEecccC---CccEEEEEEcCCCCEEEEEECCCe
Confidence 77776 788899999999987 8999999999999999 57777776654 678999999999999999999999
Q ss_pred EEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHH
Q psy8448 349 LVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELR 428 (482)
Q Consensus 349 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 428 (482)
|++|+++........ ......+ .+
T Consensus 354 i~i~~~~~~~~~~~~-----~~~~~~~-----------------------~~---------------------------- 377 (425)
T 1r5m_A 354 VNVYDLKKLNSKSRS-----LYGNRDG-----------------------IL---------------------------- 377 (425)
T ss_dssp EEEEECHHHHC---------------------------------------------------------------------
T ss_pred EEEEECCCCccceee-----eeccccc-----------------------cc----------------------------
Confidence 997776532211100 0000000 00
Q ss_pred hhhhhhhhccccCcccccccCcceeccc--ceeeccccCCcceEEEEecCceeecC
Q psy8448 429 ELGAARSLLRQTDPMIFMKQHEPEVHEK--LVIGLTHHPHQNLLGTYSEDGLLRFS 482 (482)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~sp~~~~l~s~~~Dg~i~iW 482 (482)
.+....++..+.+|.. .|++++|+|++++|++++.||.|++|
T Consensus 378 ------------~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 421 (425)
T 1r5m_A 378 ------------NPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVV 421 (425)
T ss_dssp -------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEE
T ss_pred ------------CcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEE
Confidence 0001112226778866 89999999999999999999999998
No 32
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=7.3e-41 Score=311.30 Aligned_cols=311 Identities=14% Similarity=0.198 Sum_probs=240.8
Q ss_pred ccceeeecCCCCcEEEEEEcCCCCEE-EEEeC---CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCC---C
Q psy8448 90 QLSKQIKFGSKSHVECARFSPDGQYL-ITGSV---DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRD---S 162 (482)
Q Consensus 90 ~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~---~ 162 (482)
+....+..+|...|++++|+|+++.+ ++|+. ||.|++||+.+++....... +|...|.+++|+|+ +
T Consensus 8 ~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~ 80 (357)
T 3i2n_A 8 QIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI-------EKAKPIKCGTFGATSLQQ 80 (357)
T ss_dssp CEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE-------EESSCEEEEECTTCCTTT
T ss_pred HHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee-------cccCcEEEEEEcCCCCCC
Confidence 44455667899999999999998655 55655 89999999998876543332 36789999999998 6
Q ss_pred CEEEEEeCCCcEEEEEcCCCe-EeEEeecccCCCeEEEEE------ccCCCEEEEEECCCeEEEEeCCCCc-eEEEeecc
Q psy8448 163 EMLASGSQSGKVKIWKIATGQ-CLRKLEKAHSLGVTCIQF------SRDNSQILTASFDTYVRIHGLKSGK-MLKEFRGH 234 (482)
Q Consensus 163 ~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~i~~------~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~ 234 (482)
++|++++.||.|++||+.+++ ....+ ..|...|.+++| +|++++|++++.|+.|++||+++++ .+..+..|
T Consensus 81 ~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~ 159 (357)
T 3i2n_A 81 RYLATGDFGGNLHIWNLEAPEMPVYSV-KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPV 159 (357)
T ss_dssp CCEEEEETTSCEEEECTTSCSSCSEEE-CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCC
T ss_pred ceEEEecCCCeEEEEeCCCCCccEEEE-EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecccc
Confidence 999999999999999999887 77777 689999999955 6789999999999999999999887 67777665
Q ss_pred cc----ceeEEE----EcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcC---CCCCEEEEEeCCC
Q psy8448 235 SS----FVNDIT----FTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLP---KNTEHFVVCNKTN 303 (482)
Q Consensus 235 ~~----~i~~l~----~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~---~~~~~l~~~~~d~ 303 (482)
.+ .+.+++ |+|++++|++++.||.|++||+++++..... .+...|.+++|+| ++ ..+++++.|+
T Consensus 160 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~----~~~~~v~~~~~~~~~~~~-~~l~~~~~dg 234 (357)
T 3i2n_A 160 QGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET----NIKNGVCSLEFDRKDISM-NKLVATSLEG 234 (357)
T ss_dssp TTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE----ECSSCEEEEEESCSSSSC-CEEEEEESTT
T ss_pred CCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeec----CCCCceEEEEcCCCCCCC-CEEEEECCCC
Confidence 54 788888 7889999999999999999999998875543 6778999999999 66 8999999999
Q ss_pred eEEEEEcC-CcEEEEec--CCcccCcCEEEEEEcCCCC-EEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceee
Q psy8448 304 TVVIMNMQ-GQIVRSLS--SGKREGGDFLCCTTSPRGE-WIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLN 379 (482)
Q Consensus 304 ~i~i~d~~-~~~~~~~~--~~~~~~~~v~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (482)
.|++||++ ++....+. ....+...|.+++|+|+++ +|++++.||.|++|+++ ++....
T Consensus 235 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~------------------~~~~~~ 296 (357)
T 3i2n_A 235 KFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYE------------------YPIQRS 296 (357)
T ss_dssp EEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEE------------------CCSCC-
T ss_pred eEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecC------------------CCcccc
Confidence 99999984 32222221 1112378999999999998 89999999999966554 321111
Q ss_pred cccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceeccccee
Q psy8448 380 TVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVI 459 (482)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 459 (482)
.... ++... ...-+..++..+.+|...|+
T Consensus 297 ~~~~-~g~~~--------------------------------------------------~~~~~~~~~~~~~~~~~~v~ 325 (357)
T 3i2n_A 297 KKDS-EGIEM--------------------------------------------------GVAGSVSLLQNVTLSTQPIS 325 (357)
T ss_dssp -CCT-TSCCC--------------------------------------------------CCCCEEEEEEEEECCSSCEE
T ss_pred cccC-CCCcc--------------------------------------------------ccccccceeeccccCCCCee
Confidence 0000 00000 00001112227788999999
Q ss_pred eccccCCcceEE-EEecCceeecC
Q psy8448 460 GLTHHPHQNLLG-TYSEDGLLRFS 482 (482)
Q Consensus 460 ~~~~sp~~~~l~-s~~~Dg~i~iW 482 (482)
+++|+|++++|+ |++.||.|+||
T Consensus 326 ~~~~s~~~~~l~~s~~~d~~i~iw 349 (357)
T 3i2n_A 326 SLDWSPDKRGLCVCSSFDQTVRVL 349 (357)
T ss_dssp EEEECSSSTTEEEEEETTSEEEEE
T ss_pred EEEEcCCCCeEEEEecCCCcEEEE
Confidence 999999999998 89999999998
No 33
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.7e-41 Score=319.68 Aligned_cols=332 Identities=14% Similarity=0.208 Sum_probs=241.8
Q ss_pred ccceeeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEecCC---CceeeccccccccccccccccEEEEEEcCCCCEE
Q psy8448 90 QLSKQIKFGSKSHVECARFSP-DGQYLITGSVDGFIEVWNFTT---GKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEML 165 (482)
Q Consensus 90 ~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~v~iwd~~~---~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l 165 (482)
++...+..+|.+.|++++|+| ++++||+|+.||+|+|||+.+ +...... ...+|...|++++|+|++++|
T Consensus 53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~------~~~~h~~~v~~~~~~~~~~~l 126 (437)
T 3gre_A 53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSS------LTYDCSSTVTQITMIPNFDAF 126 (437)
T ss_dssp CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCS------EEEECSSCEEEEEECTTSSEE
T ss_pred eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCccccee------eeccCCCCEEEEEEeCCCCEE
Confidence 445555579999999999999 999999999999999999876 3311100 111378999999999999999
Q ss_pred EEEeCCCcEEEEEcC---CCeEeEEee--------c-c--cCCCeEEEE--EccCCCEEEEEECCCeEEEEeCCCCceEE
Q psy8448 166 ASGSQSGKVKIWKIA---TGQCLRKLE--------K-A--HSLGVTCIQ--FSRDNSQILTASFDTYVRIHGLKSGKMLK 229 (482)
Q Consensus 166 ~~~~~dg~i~iwd~~---~~~~~~~~~--------~-~--~~~~v~~i~--~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 229 (482)
++++.||.|++||+. +++....+. . . +...+.++. +++++.+|++++.|+.|++||+++++.+.
T Consensus 127 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 206 (437)
T 3gre_A 127 AVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQ 206 (437)
T ss_dssp EEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeE
Confidence 999999999999995 444333221 1 1 456677777 55789999999999999999999999999
Q ss_pred Eeec--cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcC----CCCCEEEEEeCCC
Q psy8448 230 EFRG--HSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLP----KNTEHFVVCNKTN 303 (482)
Q Consensus 230 ~~~~--~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~----~~~~~l~~~~~d~ 303 (482)
.+.. |...|++++|+|++++|++++.||.|++||+++++++..+.. .+..+|.+++|+| ++ .++++++.|+
T Consensus 207 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~s~~~-~~l~s~~~dg 283 (437)
T 3gre_A 207 IIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF--GDHAPITHVEVCQFYGKNS-VIVVGGSSKT 283 (437)
T ss_dssp EEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBC--TTCEEEEEEEECTTTCTTE-EEEEEESTTE
T ss_pred EEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEec--CCCCceEEEEeccccCCCc-cEEEEEcCCC
Confidence 9988 899999999999999999999999999999999988877643 5667899997776 34 6899999999
Q ss_pred eEEEEEc-CCcEEEEecCCc-----------------------ccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhh
Q psy8448 304 TVVIMNM-QGQIVRSLSSGK-----------------------REGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLK 359 (482)
Q Consensus 304 ~i~i~d~-~~~~~~~~~~~~-----------------------~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~ 359 (482)
.|++||+ +++.+..+..+. .+...|.+++|+ ++++|++|+.||.|++|++.
T Consensus 284 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~---- 358 (437)
T 3gre_A 284 FLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLN---- 358 (437)
T ss_dssp EEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETT----
T ss_pred cEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECC----
Confidence 9999999 577777776431 145678999999 78999999999999965544
Q ss_pred hhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccc
Q psy8448 360 ESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQ 439 (482)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (482)
++.....+..+......+......... .. ++..
T Consensus 359 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~----~~~~----------------------- 391 (437)
T 3gre_A 359 --------------ELSSSKAVISPSRFSDVFIPTQVTANL------TM----LLRK----------------------- 391 (437)
T ss_dssp --------------CGGGCEEEECC--CCCEEEEEEEETTE------EE----EEEE-----------------------
T ss_pred --------------CcccceEEecccccCceEEEEEeecce------EE----EEEe-----------------------
Confidence 443333333221111000000000000 00 0000
Q ss_pred cCcccccccCcceecccceeeccccCC--cceEEEEecCceeecC
Q psy8448 440 TDPMIFMKQHEPEVHEKLVIGLTHHPH--QNLLGTYSEDGLLRFS 482 (482)
Q Consensus 440 ~~~~~~~~~~~~~~h~~~v~~~~~sp~--~~~l~s~~~Dg~i~iW 482 (482)
.+............|.+.|++++|+++ +.+|+||+.||.|+||
T Consensus 392 ~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw 436 (437)
T 3gre_A 392 MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIF 436 (437)
T ss_dssp CC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEE
T ss_pred cccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEe
Confidence 000001111145569999999999998 8899999999999998
No 34
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.1e-40 Score=314.77 Aligned_cols=256 Identities=15% Similarity=0.230 Sum_probs=213.2
Q ss_pred eeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCC----C---CEE
Q psy8448 93 KQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRD----S---EML 165 (482)
Q Consensus 93 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~----~---~~l 165 (482)
...+.+|.+.|++++|+| ++|++|+.||.|++||+.+++.... ......+.+|...|++++|+|+ + ++|
T Consensus 9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENP--KDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCG--GGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccC--CCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 455669999999999998 7999999999999999998762211 1122334467899999999999 9 999
Q ss_pred EEEeCCCcEEEEEcCCCeE-----eEEeeccc-----CCCeEEEEEc----cCCCE-EEEEECCCeEEEEeCCC------
Q psy8448 166 ASGSQSGKVKIWKIATGQC-----LRKLEKAH-----SLGVTCIQFS----RDNSQ-ILTASFDTYVRIHGLKS------ 224 (482)
Q Consensus 166 ~~~~~dg~i~iwd~~~~~~-----~~~~~~~~-----~~~v~~i~~~----~~~~~-l~~~~~dg~i~i~d~~~------ 224 (482)
++++.||.|++||+.+++. ...+ ..| ...|.+++|+ |++.+ |++++.||.|++||+++
T Consensus 85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 163 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITREDETKKVIFEKL-DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN 163 (397)
T ss_dssp EEEETTSCEEEEEEEECTTTCCEEEEEE-CCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred EEEcCCCCEEEEEccCCcccccccceee-cccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence 9999999999999988876 6666 566 5899999999 99999 99999999999999998
Q ss_pred CceEE-----Eee-------ccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCC---ccceeEEEEc
Q psy8448 225 GKMLK-----EFR-------GHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGAS---DIAVNSIHLL 289 (482)
Q Consensus 225 ~~~~~-----~~~-------~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~v~~i~~~ 289 (482)
++.+. .+. .|...|.+++|+|++ +|++++.||.|++||+++++.+..+.....| ...|.+++|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~ 242 (397)
T 1sq9_A 164 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 242 (397)
T ss_dssp HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred cceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEEC
Confidence 66655 663 488899999999999 9999999999999999999988888721127 8899999999
Q ss_pred CCCCCEEEEEeCC---CeEEEEEc-CCcEEEEecCCc----------ccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448 290 PKNTEHFVVCNKT---NTVVIMNM-QGQIVRSLSSGK----------REGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ 355 (482)
Q Consensus 290 ~~~~~~l~~~~~d---~~i~i~d~-~~~~~~~~~~~~----------~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~ 355 (482)
|++ .++++++.| +.|++||+ .++.+..+.... .+...|.+++|+|++++|++++.||.|++|+++
T Consensus 243 ~~~-~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 321 (397)
T 1sq9_A 243 PQG-SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK 321 (397)
T ss_dssp SST-TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred CCC-CEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 998 899999999 99999999 677777776510 037889999999999999999999999965543
No 35
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.5e-40 Score=358.04 Aligned_cols=363 Identities=19% Similarity=0.227 Sum_probs=290.9
Q ss_pred CCCCCCceeec--cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccc
Q psy8448 62 GLLPPGTTIDL--FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLK 139 (482)
Q Consensus 62 ~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 139 (482)
.+.|+|..++. .++.+.+|+...... .....+|...|++++|+|++++|++|+.||.|++||+.+++....+.
T Consensus 622 ~~s~~~~~l~s~~~d~~i~vw~~~~~~~-----~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~ 696 (1249)
T 3sfz_A 622 CFSQDGQRIASCGADKTLQVFKAETGEK-----LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD 696 (1249)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCE-----EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EECCCCCEEEEEeCCCeEEEEECCCCCE-----EEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEc
Confidence 34567766655 356788888755432 22334899999999999999999999999999999999988766554
Q ss_pred cccccccccccccEEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeE
Q psy8448 140 YQAQDNFMLMEEAVMSLAYSR--DSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYV 217 (482)
Q Consensus 140 ~~~~~~~~~h~~~i~~l~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i 217 (482)
+|...|.+++|+| ++.++++++.||.|++||+.+++....+ .+|...|.+++|+|+++++++++.||.|
T Consensus 697 --------~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~-~~h~~~v~~~~~sp~~~~l~s~s~dg~v 767 (1249)
T 3sfz_A 697 --------EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTM-FGHTNSVNHCRFSPDDELLASCSADGTL 767 (1249)
T ss_dssp --------CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEE-CCCSSCEEEEEECSSTTEEEEEESSSEE
T ss_pred --------CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhee-cCCCCCEEEEEEecCCCEEEEEECCCeE
Confidence 3578999999999 5568999999999999999999998888 6899999999999999999999999999
Q ss_pred EEEeCCCCceEEEe-------------------------------------------------------eccccceeEEE
Q psy8448 218 RIHGLKSGKMLKEF-------------------------------------------------------RGHSSFVNDIT 242 (482)
Q Consensus 218 ~i~d~~~~~~~~~~-------------------------------------------------------~~~~~~i~~l~ 242 (482)
++||+++++....+ .+|...|.+++
T Consensus 768 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~ 847 (1249)
T 3sfz_A 768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCD 847 (1249)
T ss_dssp EEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEE
T ss_pred EEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEE
Confidence 99999776543322 15778899999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCC----------
Q psy8448 243 FTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQG---------- 312 (482)
Q Consensus 243 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~---------- 312 (482)
|+|+++++++++.||.|++||+.++.....+. +|...|.+++|+|++ ..+++++.|+.|++|++..
T Consensus 848 ~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~---~h~~~v~~v~~spdg-~~l~s~s~dg~v~vw~~~~~~~~~~~~~~ 923 (1249)
T 3sfz_A 848 FSPYDHLAVIALSQYCVELWNIDSRLKVADCR---GHLSWVHGVMFSPDG-SSFLTASDDQTIRVWETKKVCKNSAIVLK 923 (1249)
T ss_dssp ECSSTTEEEEECSSSCEEEEETTTTEEEEEEC---CCSSCEEEEEECTTS-SEEEEEETTSCEEEEEHHHHHSCCSSSEE
T ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCceeeecC---CCccceEEEEECCCC-CEEEEEeCCCeEEEEEccccceeeeeccc
Confidence 99999999999999999999999998888777 888999999999988 7899999999999998521
Q ss_pred ----------------------------------------------------------------------cEEEEecCCc
Q psy8448 313 ----------------------------------------------------------------------QIVRSLSSGK 322 (482)
Q Consensus 313 ----------------------------------------------------------------------~~~~~~~~~~ 322 (482)
+....+ .
T Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~---~ 1000 (1249)
T 3sfz_A 924 QEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSG---V 1000 (1249)
T ss_dssp EEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEEC---C
T ss_pred ceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeec---c
Confidence 011111 1
Q ss_pred ccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhh----------------------hcccccceeeeecccceeec
Q psy8448 323 REGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKE----------------------SNLMKTLQCLQEETGVSLNT 380 (482)
Q Consensus 323 ~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~ 380 (482)
.|...|.+++|+|+|++|++++.||.|++|++...... ......+.+|+..++.....
T Consensus 1001 ~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~ 1080 (1249)
T 3sfz_A 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERD 1080 (1249)
T ss_dssp CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEE
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEE
Confidence 24678899999999999999999999999998642111 11234577888888887777
Q ss_pred ccccccceeccCC---------CcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcc
Q psy8448 381 VDSVDGFIADINN---------GHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEP 451 (482)
Q Consensus 381 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (482)
+..+.+.+..++. ++.++.+ ..|+..++.+...+
T Consensus 1081 ~~~~~~~v~~~~~s~d~~~l~s~s~d~~v-------------------------------------~iwd~~~~~~~~~l 1123 (1249)
T 3sfz_A 1081 FTCHQGTVLSCAISSDATKFSSTSADKTA-------------------------------------KIWSFDLLSPLHEL 1123 (1249)
T ss_dssp EECCSSCCCCEEECSSSSSCEEECCSSCC-------------------------------------CEECSSSSSCSBCC
T ss_pred EcccCCcEEEEEECCCCCEEEEEcCCCcE-------------------------------------EEEECCCcceeeee
Confidence 7766665544332 2333333 22344445566688
Q ss_pred eecccceeeccccCCcceEEEEecCceeecC
Q psy8448 452 EVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS 482 (482)
Q Consensus 452 ~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW 482 (482)
.+|.+.|++++|+|+|++||+|+.||.|++|
T Consensus 1124 ~~h~~~v~~~~~s~dg~~lat~~~dg~i~vw 1154 (1249)
T 3sfz_A 1124 KGHNGCVRCSAFSLDGILLATGDDNGEIRIW 1154 (1249)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSCCCEE
T ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 9999999999999999999999999999998
No 36
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=8.6e-40 Score=352.19 Aligned_cols=363 Identities=19% Similarity=0.255 Sum_probs=292.0
Q ss_pred ceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC
Q psy8448 92 SKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS 171 (482)
Q Consensus 92 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d 171 (482)
....+.+|.+.|++++|+|+|++|++|+.||+|++||+.+++....+. +|...|.+++|+|++++|++++.|
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~--------~h~~~v~~~~~s~~~~~l~s~~~d 678 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIK--------AHEDEVLCCAFSSDDSYIATCSAD 678 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC--------CCSSCEEEEEECTTSSEEEEEETT
T ss_pred ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEec--------cCCCCEEEEEEecCCCEEEEEeCC
Confidence 344566999999999999999999999999999999999988766554 467899999999999999999999
Q ss_pred CcEEEEEcCCCeEeEEeecccCCCeEEEEEcc--CCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCE
Q psy8448 172 GKVKIWKIATGQCLRKLEKAHSLGVTCIQFSR--DNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHS 249 (482)
Q Consensus 172 g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 249 (482)
|.|++||+.+++.+..+ ..|...|.+++|+| ++..+++++.|+.|++||+++++++..+.+|...|.+++|+|++++
T Consensus 679 ~~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~ 757 (1249)
T 3sfz_A 679 KKVKIWDSATGKLVHTY-DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDEL 757 (1249)
T ss_dssp SEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTE
T ss_pred CeEEEEECCCCceEEEE-cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCE
Confidence 99999999999999988 68999999999999 5568999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCceeeeeec----------------------------------------------------cC
Q psy8448 250 VLSASSDGTVKMWNLKTTECTSTFKS----------------------------------------------------LG 277 (482)
Q Consensus 250 l~~~~~dg~i~i~d~~~~~~~~~~~~----------------------------------------------------~~ 277 (482)
|++++.||.|++||+++++....+.. ..
T Consensus 758 l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~ 837 (1249)
T 3sfz_A 758 LASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHT 837 (1249)
T ss_dssp EEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEEC
T ss_pred EEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcC
Confidence 99999999999999987765443321 01
Q ss_pred CCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehh
Q psy8448 278 ASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQ 356 (482)
Q Consensus 278 ~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~ 356 (482)
+|...+.+++|+|++ .++++++.++.|++||+ .+..+..+..+ ...|.+++|+|+|++|++++.||.+++|++..
T Consensus 838 ~~~~~v~~~~~sp~~-~~l~~~~~dg~v~vwd~~~~~~~~~~~~h---~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 838 GHHSTIQYCDFSPYD-HLAVIALSQYCVELWNIDSRLKVADCRGH---LSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp SSSSCCCEEEECSST-TEEEEECSSSCEEEEETTTTEEEEEECCC---SSCEEEEEECTTSSEEEEEETTSCEEEEEHHH
T ss_pred CCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCceeeecCCC---ccceEEEEECCCCCEEEEEeCCCeEEEEEccc
Confidence 566788999999998 89999999999999999 56777777654 78899999999999999999999999999764
Q ss_pred hhhh-------------------------------------------------------------hcccccceeeeeccc
Q psy8448 357 YLKE-------------------------------------------------------------SNLMKTLQCLQEETG 375 (482)
Q Consensus 357 ~~~~-------------------------------------------------------------~~~~~~~~~~~~~~~ 375 (482)
.... ......+.+|+..++
T Consensus 914 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~ 993 (1249)
T 3sfz_A 914 VCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN 993 (1249)
T ss_dssp HHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTT
T ss_pred cceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCC
Confidence 2110 112235677888777
Q ss_pred ceeecccccccceec---------cCCCcccchhccccccCC------------------CchhhhhhhHHHHHHHHHHH
Q psy8448 376 VSLNTVDSVDGFIAD---------INNGHWDTVLKSVQSLKL------------------PEKKLIDLYEQVVLELIELR 428 (482)
Q Consensus 376 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l------------------~~~~~~~~~~~~~~~~~~~~ 428 (482)
.....+..+.+.+.. +++++.++.++.|+...- ++..++..
T Consensus 994 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~------------ 1061 (1249)
T 3sfz_A 994 RVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSW------------ 1061 (1249)
T ss_dssp SCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEE------------
T ss_pred ceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEE------------
Confidence 766666655554432 344555666666532110 00111110
Q ss_pred hhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448 429 ELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS 482 (482)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW 482 (482)
.....+..|+..++.+...+.+|.+.|++++|+|++++|++++.||+|++|
T Consensus 1062 ---~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iw 1112 (1249)
T 3sfz_A 1062 ---SFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1112 (1249)
T ss_dssp ---ESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEE
T ss_pred ---ECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEE
Confidence 111123345556666677888999999999999999999999999999998
No 37
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.8e-40 Score=304.04 Aligned_cols=277 Identities=17% Similarity=0.270 Sum_probs=234.0
Q ss_pred CCCCceeec--cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccc
Q psy8448 64 LPPGTTIDL--FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQ 141 (482)
Q Consensus 64 ~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 141 (482)
.|++..++. .++.+.+|+....... .....|...|.+++|+|+|++|++|+.|+.+++|++........ ..
T Consensus 73 s~d~~~l~s~s~Dg~v~vWd~~~~~~~-----~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~--~~ 145 (354)
T 2pbi_B 73 CKDKRRIVSSSQDGKVIVWDSFTTNKE-----HAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENM--AA 145 (354)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEE-----EEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCS--GG
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCcc-----eEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccc--cc
Confidence 355554444 3667888885443322 22337888999999999999999999999999999875432211 12
Q ss_pred cccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEcc--CCCEEEEEECCCeEEE
Q psy8448 142 AQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSR--DNSQILTASFDTYVRI 219 (482)
Q Consensus 142 ~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~dg~i~i 219 (482)
....+.+|...|.+++|+|++..|++++.|++|++||+++++.+..+ .+|...|.+++|+| ++.+|++|+.||.|++
T Consensus 146 ~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~ 224 (354)
T 2pbi_B 146 KKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF-HGHGADVLCLDLAPSETGNTFVSGGCDKKAMV 224 (354)
T ss_dssp GCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECCCSSCCEEEEEETTSCEEE
T ss_pred cceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEE-cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEE
Confidence 23345568999999999999999999999999999999999999888 68999999999988 4689999999999999
Q ss_pred EeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEE
Q psy8448 220 HGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVC 299 (482)
Q Consensus 220 ~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~ 299 (482)
||+++++++..+.+|...|.+++|+|++++|++++.|++|++||+++++.+..+.. ..+...+.+++|+|++ .+++++
T Consensus 225 wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~-~~~~~~~~~~~~s~~g-~~l~~g 302 (354)
T 2pbi_B 225 WDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSK-ESIIFGASSVDFSLSG-RLLFAG 302 (354)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-TTCCSCEEEEEECTTS-SEEEEE
T ss_pred EECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC-CCcccceeEEEEeCCC-CEEEEE
Confidence 99999999999999999999999999999999999999999999999877665542 1234578999999998 899999
Q ss_pred eCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448 300 NKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRL 353 (482)
Q Consensus 300 ~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~ 353 (482)
+.|+.|++||+ ++..+..+..+ ...|.+++|+|+|++|++|+.||.|++|+
T Consensus 303 ~~d~~i~vwd~~~~~~~~~l~~h---~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 303 YNDYTINVWDVLKGSRVSILFGH---ENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp ETTSCEEEEETTTCSEEEEECCC---SSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred ECCCcEEEEECCCCceEEEEECC---CCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99999999999 67777777655 78999999999999999999999999774
No 38
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-40 Score=315.44 Aligned_cols=270 Identities=13% Similarity=0.228 Sum_probs=220.5
Q ss_pred CCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccE
Q psy8448 74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAV 153 (482)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i 153 (482)
++.+.+|+......... . ....|...|++++|+|++++|++|+.||.|++||+.+.... ......+.+|...|
T Consensus 44 d~~v~iw~~~~~~~~~~-~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~----~~~~~~~~~h~~~v 116 (416)
T 2pm9_A 44 DSSLELWSLLAADSEKP-I--ASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNA----INSMARFSNHSSSV 116 (416)
T ss_dssp CCCCEEEESSSGGGCSC-S--CCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSC----CCEEEECCCSSSCC
T ss_pred CCeEEEEEccCCCCCcE-E--EEEecCCceEEEEECCCCCeEEEEccCCeEEEeeccccccc----ccchhhccCCccce
Confidence 56788888765543211 1 12368999999999999999999999999999999872110 01122334578899
Q ss_pred EEEEEcCC-CCEEEEEeCCCcEEEEEcCCCe------EeEEe--ecccCCCeEEEEEccC-CCEEEEEECCCeEEEEeCC
Q psy8448 154 MSLAYSRD-SEMLASGSQSGKVKIWKIATGQ------CLRKL--EKAHSLGVTCIQFSRD-NSQILTASFDTYVRIHGLK 223 (482)
Q Consensus 154 ~~l~~~~~-~~~l~~~~~dg~i~iwd~~~~~------~~~~~--~~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~i~d~~ 223 (482)
++++|+|+ +++|++++.||.|++||+.+++ ....+ ...|...|.+++|+|+ +.+|++++.|+.|++||++
T Consensus 117 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 196 (416)
T 2pm9_A 117 KTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLK 196 (416)
T ss_dssp CEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETT
T ss_pred EEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECC
Confidence 99999998 8999999999999999998876 32222 2468889999999998 7899999999999999999
Q ss_pred CCceEEEeecc------ccceeEEEEcCCC-CEEEEEeCCC---cEEEEECCCC-ceeeeeeccCCCccceeEEEEcCCC
Q psy8448 224 SGKMLKEFRGH------SSFVNDITFTADG-HSVLSASSDG---TVKMWNLKTT-ECTSTFKSLGASDIAVNSIHLLPKN 292 (482)
Q Consensus 224 ~~~~~~~~~~~------~~~i~~l~~~~~~-~~l~~~~~dg---~i~i~d~~~~-~~~~~~~~~~~~~~~v~~i~~~~~~ 292 (482)
+++.+..+..+ ...|.+++|+|++ .++++++.|+ .|++||++++ .....+.. .|...|.+++|+|++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~--~~~~~v~~~~~s~~~ 274 (416)
T 2pm9_A 197 AKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQ--GHQKGILSLDWCHQD 274 (416)
T ss_dssp TTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCS--CCSSCEEEEEECSSC
T ss_pred CCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeec--CccCceeEEEeCCCC
Confidence 99998888876 7889999999997 6899999998 9999999986 33333321 578899999999943
Q ss_pred CCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCC-CEEEEEeCCcEEEEEeeh
Q psy8448 293 TEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRG-EWIYCVGEDMVLVVRLIQ 355 (482)
Q Consensus 293 ~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g-~~l~~~~~dg~i~iw~~~ 355 (482)
..++++++.|+.|++||+ +++.+..+..+ ...|.+++|+|++ .+|++++.||.|++|++.
T Consensus 275 ~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~---~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~ 336 (416)
T 2pm9_A 275 EHLLLSSGRDNTVLLWNPESAEQLSQFPAR---GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQ 336 (416)
T ss_dssp SSCEEEEESSSEEEEECSSSCCEEEEEECS---SSCCCCEEECTTCTTEEEECCSSSEEEEEESC
T ss_pred CCeEEEEeCCCCEEEeeCCCCccceeecCC---CCceEEEEECCCCCCEEEEEecCCcEEEEEcc
Confidence 389999999999999999 67777777765 6789999999999 899999999999977665
No 39
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-41 Score=324.86 Aligned_cols=323 Identities=13% Similarity=0.101 Sum_probs=228.8
Q ss_pred CCCCcEEEEEEcCCC---------CEEEE-------------------EeCCCeEEEEecCCCceeeccccccccccccc
Q psy8448 98 GSKSHVECARFSPDG---------QYLIT-------------------GSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLM 149 (482)
Q Consensus 98 ~h~~~v~~~~~s~~~---------~~l~s-------------------~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h 149 (482)
.+.+.|.+++|+|++ ++||+ ++.|++|+|||+.+++.... ....+.+|
T Consensus 131 ~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~----~~~~l~~~ 206 (524)
T 2j04_B 131 NVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCV----KVQTIVHS 206 (524)
T ss_dssp ECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEE----EEEEEEEC
T ss_pred ECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCce----EEEEEEec
Confidence 467788899998876 56666 45788999999987764221 11123345
Q ss_pred cccEEEEEEcCC------CCEEEEEeCCCcEEEEEcCCCeE-----------eEEeecccCCCeEEEEEccCCCEEEEEE
Q psy8448 150 EEAVMSLAYSRD------SEMLASGSQSGKVKIWKIATGQC-----------LRKLEKAHSLGVTCIQFSRDNSQILTAS 212 (482)
Q Consensus 150 ~~~i~~l~~~~~------~~~l~~~~~dg~i~iwd~~~~~~-----------~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 212 (482)
.+.|.+++|+|+ +.+||+++.||+|++||+.++.. ...+ .+|...|.+++|+++ ..|++|+
T Consensus 207 ~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l-~~h~~~v~sv~~s~~-~~lasgs 284 (524)
T 2j04_B 207 FGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTL-SLADSLITTFDFLSP-TTVVCGF 284 (524)
T ss_dssp CCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEE-CCTTTCEEEEEESSS-SEEEEEE
T ss_pred CCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEE-EcCCCCEEEEEecCC-CeEEEEe
Confidence 788999999996 57999999999999999976632 1244 578899999999986 4899999
Q ss_pred CCCeEEEEeCCCCc-eEEEeeccccceeEE--EEcCCC-CEEEEEeCCCcEEEEECCCCceeeeeeccCCCc--cceeEE
Q psy8448 213 FDTYVRIHGLKSGK-MLKEFRGHSSFVNDI--TFTADG-HSVLSASSDGTVKMWNLKTTECTSTFKSLGASD--IAVNSI 286 (482)
Q Consensus 213 ~dg~i~i~d~~~~~-~~~~~~~~~~~i~~l--~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~v~~i 286 (482)
.||+|++||+++++ +...+.+|...|.++ +|+|++ .+|++++.|++|++||++++++...+. +|. ..|.++
T Consensus 285 ~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~---~~~~~~~v~~v 361 (524)
T 2j04_B 285 KNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTV---SRFRGSNLVPV 361 (524)
T ss_dssp TTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEE---EECSCCSCCCE
T ss_pred CCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccc---cccccCcccce
Confidence 99999999999764 456688999999999 578887 899999999999999999887766654 333 347899
Q ss_pred EEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhc---
Q psy8448 287 HLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESN--- 362 (482)
Q Consensus 287 ~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~--- 362 (482)
+|+|++ ..+++++.|++|++||+ .+..+..+..+ ...|++++|+|+|++|++|+.||.|++|+.........
T Consensus 362 ~fsp~~-~~l~s~~~d~tv~lwd~~~~~~~~~l~gH---~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~ 437 (524)
T 2j04_B 362 VYCPQI-YSYIYSDGASSLRAVPSRAAFAVHPLVSR---ETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNS 437 (524)
T ss_dssp EEETTT-TEEEEECSSSEEEEEETTCTTCCEEEEEC---SSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC---
T ss_pred EeCCCc-CeEEEeCCCCcEEEEECcccccceeeecC---CCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccC
Confidence 999998 78999999999999999 56655666654 78999999999999999999999999887643211110
Q ss_pred --ccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhcccc
Q psy8448 363 --LMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQT 440 (482)
Q Consensus 363 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (482)
......+|.+. .++++.. ++.+....+ ..
T Consensus 438 ~~~~~~~~v~~v~--------~sp~g~~-----------~~~~~~~~~-----------------------------~~- 468 (524)
T 2j04_B 438 SATQKSLRLWKWD--------YSIKDDK-----------YRIDSSYEV-----------------------------YP- 468 (524)
T ss_dssp ---CCCCEEEECB--------CCSSSCE-----------EEECCCCCC-----------------------------CC-
T ss_pred ccceeeeEEEEec--------cCCCCCe-----------EEccCCcee-----------------------------cc-
Confidence 00001122221 1222221 111110011 00
Q ss_pred CcccccccCcceecccceeeccccCCcc---eEEEEecCceeecC
Q psy8448 441 DPMIFMKQHEPEVHEKLVIGLTHHPHQN---LLGTYSEDGLLRFS 482 (482)
Q Consensus 441 ~~~~~~~~~~~~~h~~~v~~~~~sp~~~---~l~s~~~Dg~i~iW 482 (482)
...++.++..+.+|...|.+++|+|+++ +||+|+.||.||||
T Consensus 469 ~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw 513 (524)
T 2j04_B 469 LTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLE 513 (524)
T ss_dssp -------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEE
T ss_pred cccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEE
Confidence 0011233347889999999999999965 99999999999998
No 40
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=6.7e-40 Score=307.89 Aligned_cols=284 Identities=13% Similarity=0.204 Sum_probs=231.6
Q ss_pred eecCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC-CCCEEEEEeCCC
Q psy8448 95 IKFGSKSHVECARFSPDG-QYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR-DSEMLASGSQSG 172 (482)
Q Consensus 95 ~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~~~~~dg 172 (482)
.+.+|...|++++|+|++ ++|++|+.||.|+|||+.+++....+.. .+|...|.+++|+| ++++|++++.|+
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~h~~~v~~~~~~~~~~~~l~s~~~d~ 141 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQG------MGPGDAITGMKFNQFNTNQLFVSSIRG 141 (383)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECC------CSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeec------CCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence 345999999999999999 9999999999999999998876554432 24688999999999 789999999999
Q ss_pred cEEEEEcCCCeEeEEeec--ccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCC-E
Q psy8448 173 KVKIWKIATGQCLRKLEK--AHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGH-S 249 (482)
Q Consensus 173 ~i~iwd~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~-~ 249 (482)
.|++||+.+ .....+.. .+...|.+++|+|++++|++++.|+.|++||+ +++.+..+.+|...|.+++|+|+++ +
T Consensus 142 ~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~ 219 (383)
T 3ei3_B 142 ATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWL 219 (383)
T ss_dssp EEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTE
T ss_pred EEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCE
Confidence 999999986 44444422 23478999999999999999999999999999 5778889999999999999999999 9
Q ss_pred EEEEeCCCcEEEEECCC----CceeeeeeccCCCccceeEEEEcC-CCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcc
Q psy8448 250 VLSASSDGTVKMWNLKT----TECTSTFKSLGASDIAVNSIHLLP-KNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKR 323 (482)
Q Consensus 250 l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~~~~v~~i~~~~-~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~ 323 (482)
|++++.|+.|++||+++ +..+..+ .|...|.+++|+| ++ .++++++.|+.|++||+ +++....+..+..
T Consensus 220 l~s~~~d~~i~iwd~~~~~~~~~~~~~~----~~~~~v~~~~~s~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 294 (383)
T 3ei3_B 220 MATSSVDATVKLWDLRNIKDKNSYIAEM----PHEKPVNAAYFNPTDS-TKLLTTDQRNEIRVYSSYDWSKPDQIIIHPH 294 (383)
T ss_dssp EEEEETTSEEEEEEGGGCCSTTCEEEEE----ECSSCEEEEEECTTTS-CEEEEEESSSEEEEEETTBTTSCSEEEECCB
T ss_pred EEEEeCCCEEEEEeCCCCCcccceEEEe----cCCCceEEEEEcCCCC-CEEEEEcCCCcEEEEECCCCccccccccccc
Confidence 99999999999999998 4455554 5788999999999 77 89999999999999999 4444333332210
Q ss_pred --------------cCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeeccccccccee
Q psy8448 324 --------------EGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIA 389 (482)
Q Consensus 324 --------------~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (482)
+...+..++|+|+|++ +++.||.|+ +|+..++..
T Consensus 295 ~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~------------------iwd~~~~~~------------ 342 (383)
T 3ei3_B 295 RQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTID------------------IYDANSGGL------------ 342 (383)
T ss_dssp CCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEE------------------EEETTTCCE------------
T ss_pred cccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEE------------------EEecCCCce------------
Confidence 1244556777777776 778999999 566655521
Q ss_pred ccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCccee--cccceeeccccCCc
Q psy8448 390 DINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEV--HEKLVIGLTHHPHQ 467 (482)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~sp~~ 467 (482)
.. .+.+ |...+..++|+|++
T Consensus 343 ------------------------------------------------~~----------~l~~~~~~~~~~~~~~s~~g 364 (383)
T 3ei3_B 343 ------------------------------------------------VH----------QLRDPNAAGIISLNKFSPTG 364 (383)
T ss_dssp ------------------------------------------------EE----------EECBTTBCSCCCEEEECTTS
T ss_pred ------------------------------------------------ee----------eecCCCCCceEEEEEEecCc
Confidence 11 3333 56678888999999
Q ss_pred ceEEEEecCceeecC
Q psy8448 468 NLLGTYSEDGLLRFS 482 (482)
Q Consensus 468 ~~l~s~~~Dg~i~iW 482 (482)
++|++|+ ||.|+||
T Consensus 365 ~~l~s~s-d~~i~iw 378 (383)
T 3ei3_B 365 DVLASGM-GFNILIW 378 (383)
T ss_dssp SEEEEEE-TTEEEEE
T ss_pred cEEEEec-CCcEEEE
Confidence 9999997 9999998
No 41
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=8.2e-39 Score=292.10 Aligned_cols=266 Identities=22% Similarity=0.358 Sum_probs=224.5
Q ss_pred cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccccccccccccc
Q psy8448 73 FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEA 152 (482)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~ 152 (482)
.++.+.+|+..............+.+|...|++++|+|++++|++|+.|++|++||+.+++....+ .+|...
T Consensus 38 ~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~--------~~h~~~ 109 (319)
T 3frx_A 38 RDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF--------VGHKSD 109 (319)
T ss_dssp TTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE--------ECCSSC
T ss_pred CCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEE--------ccCCCc
Confidence 367788898765544333334455699999999999999999999999999999999998765544 346889
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccC------CCEEEEEECCCeEEEEeCCCCc
Q psy8448 153 VMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRD------NSQILTASFDTYVRIHGLKSGK 226 (482)
Q Consensus 153 i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~------~~~l~~~~~dg~i~i~d~~~~~ 226 (482)
|.+++|+|++++|++++.|+.|++||++ ++.+..+ .+|...|.+++|.|. +..+++++.|+.|++||+++.+
T Consensus 110 v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 187 (319)
T 3frx_A 110 VMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL-LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187 (319)
T ss_dssp EEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEE-CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEE-eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch
Confidence 9999999999999999999999999986 4566666 689999999999985 4489999999999999999999
Q ss_pred eEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEE
Q psy8448 227 MLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVV 306 (482)
Q Consensus 227 ~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~ 306 (482)
....+.+|...|.+++|+|++++|++++.||.|++||+++++.+..+. ....|.+++|+|++ .++++++. +.++
T Consensus 188 ~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~sp~~-~~la~~~~-~~i~ 261 (319)
T 3frx_A 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS----AQDEVFSLAFSPNR-YWLAAATA-TGIK 261 (319)
T ss_dssp EEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE----CCSCEEEEEECSSS-SEEEEEET-TEEE
T ss_pred hheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec----CCCcEEEEEEcCCC-CEEEEEcC-CCcE
Confidence 999999999999999999999999999999999999999999888875 34689999999998 67777665 5699
Q ss_pred EEEcCC-cEEEEecCC-----cccCcCEEEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448 307 IMNMQG-QIVRSLSSG-----KREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLI 354 (482)
Q Consensus 307 i~d~~~-~~~~~~~~~-----~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~ 354 (482)
+|+++. ..+..+... ..+...+.+++|+|||++|++|+.||.|++|++
T Consensus 262 v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~ 315 (319)
T 3frx_A 262 VFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315 (319)
T ss_dssp EEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred EEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEE
Confidence 999954 444444322 223567899999999999999999999996664
No 42
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.7e-39 Score=309.16 Aligned_cols=332 Identities=18% Similarity=0.173 Sum_probs=258.7
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy8448 102 HVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIAT 181 (482)
Q Consensus 102 ~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~ 181 (482)
.+++++|+|++++|++|+.||.|++||+.+++....+..+ ..+....|+|++++|++++.||.|++||+.+
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 128 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA---------DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF 128 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC---------CEEEEEEECSSSCEEEEEETTSCEEEECTTS
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC---------CceEEEEEecCCCEEEEEECCCCEEEEeCCC
Confidence 3558999999999999999999999999887654433322 3455667899999999999999999999998
Q ss_pred CeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEE
Q psy8448 182 GQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKM 261 (482)
Q Consensus 182 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i 261 (482)
++....+ ..|...|.+++|+|++++|++++.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++
T Consensus 129 ~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~i 207 (420)
T 3vl1_A 129 NLQREID-QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRL 207 (420)
T ss_dssp CEEEEET-TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cceeeec-ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence 8887776 689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCceeeeeeccCCCccceeEEE---------------------EcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEec
Q psy8448 262 WNLKTTECTSTFKSLGASDIAVNSIH---------------------LLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLS 319 (482)
Q Consensus 262 ~d~~~~~~~~~~~~~~~~~~~v~~i~---------------------~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~ 319 (482)
||+++++....+.....+...+.+++ |+|++ .++++++.||.|++||+ .++.+..+.
T Consensus 208 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~ 286 (420)
T 3vl1_A 208 WECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQTIQLP 286 (420)
T ss_dssp EETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred eECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCceeEEcc
Confidence 99999998888875444445555555 46777 79999999999999999 566666665
Q ss_pred CCcccCcCEEEEEEcCCCC-EEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccc
Q psy8448 320 SGKREGGDFLCCTTSPRGE-WIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDT 398 (482)
Q Consensus 320 ~~~~~~~~v~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (482)
.. +...+.+++|+|+++ +|++|+.||.|++|+++.... .+..+....+..+..+..+++. .+++++.|+
T Consensus 287 ~~--~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~------~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~d~ 356 (420)
T 3vl1_A 287 SK--FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC------PVGEFLINEGTPINNVYFAAGA--LFVSSGFDT 356 (420)
T ss_dssp CT--TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS------CSEEEEESTTSCEEEEEEETTE--EEEEETTTE
T ss_pred cc--cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC------chhhhhccCCCCceEEEeCCCC--EEEEecCCc
Confidence 43 367899999999999 999999999999998864321 1223333233333333333332 466777888
Q ss_pred hhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcc---eEEEEec
Q psy8448 399 VLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQN---LLGTYSE 475 (482)
Q Consensus 399 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~---~l~s~~~ 475 (482)
.++.|+.........+ ........+.+|...|.+++|+|+++ .|++.+.
T Consensus 357 ~v~iw~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~ 408 (420)
T 3vl1_A 357 SIKLDIISDPESERPA----------------------------IEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGK 408 (420)
T ss_dssp EEEEEEECCTTCCSCE----------------------------ECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEET
T ss_pred cEEEEeccCCCCCccc----------------------------eeccCccEEccCCcceEEEEEccCCCCcceEEEEcC
Confidence 8877754221000000 00011114557888999999999999 6777777
Q ss_pred CceeecC
Q psy8448 476 DGLLRFS 482 (482)
Q Consensus 476 Dg~i~iW 482 (482)
+|.+++|
T Consensus 409 ~g~~~~~ 415 (420)
T 3vl1_A 409 NNFCALY 415 (420)
T ss_dssp TTEEEEE
T ss_pred CceEEEE
Confidence 9999988
No 43
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.3e-40 Score=314.96 Aligned_cols=302 Identities=15% Similarity=0.157 Sum_probs=231.2
Q ss_pred ecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC-CCCEEEEEeCCCc
Q psy8448 96 KFGSKSHVECARFSP-DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR-DSEMLASGSQSGK 173 (482)
Q Consensus 96 ~~~h~~~v~~~~~s~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~~~~~dg~ 173 (482)
..+|...|+||+|+| ++++||+|+.||.|+|||+.+++....+ .+.+|.+.|++++|+| ++++|++|+.||+
T Consensus 115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~------~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~ 188 (435)
T 4e54_B 115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFI------KGIGAGGSITGLKFNPLNTNQFYASSMEGT 188 (435)
T ss_dssp EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEE------CCCSSSCCCCEEEECSSCTTEEEEECSSSC
T ss_pred CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEE------EccCCCCCEEEEEEeCCCCCEEEEEeCCCE
Confidence 347899999999999 6779999999999999999877644333 2345789999999998 7889999999999
Q ss_pred EEEEEcCCCeEeEEee-cccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCC-EEE
Q psy8448 174 VKIWKIATGQCLRKLE-KAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGH-SVL 251 (482)
Q Consensus 174 i~iwd~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~ 251 (482)
|++||++++....... ..+...+.+++|+|++.+|++|+.||.|++||++ ++.+..+.+|...|.+++|+|++. +|+
T Consensus 189 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~ 267 (435)
T 4e54_B 189 TRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLA 267 (435)
T ss_dssp EEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEE
T ss_pred EEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEE
Confidence 9999998765433321 1234457899999999999999999999999986 456778889999999999999876 788
Q ss_pred EEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcc---cCcC
Q psy8448 252 SASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKR---EGGD 327 (482)
Q Consensus 252 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~---~~~~ 327 (482)
+++.|+.|++||+++.+....+....+|...|.+++|+|++ .+|++++.|+.|++||+ .+.....+..+.. ....
T Consensus 268 s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg-~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 346 (435)
T 4e54_B 268 TASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG-ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLT 346 (435)
T ss_dssp EEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTS-SEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSC
T ss_pred EecCcceeeEEecccccccceEEEeeeccccccceeECCCC-CeeEEEcCCCEEEEEECCCCccceEEecccccccccce
Confidence 99999999999999887666655455789999999999998 89999999999999999 5666655544321 1123
Q ss_pred EEEEEEcCCCCEEEEEeC-CcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhcccccc
Q psy8448 328 FLCCTTSPRGEWIYCVGE-DMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSL 406 (482)
Q Consensus 328 v~~~~~~~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (482)
+..+.|+|++..+++++. |+.+.++. ......+++|+..+|..+.
T Consensus 347 ~~~~~~~~~~~~~~~~~~~d~~~~~~~-------~~~~~~i~iwd~~~g~~~~--------------------------- 392 (435)
T 4e54_B 347 PIKAAWHPRYNLIVVGRYPDPNFKSCT-------PYELRTIDVFDGNSGKMMC--------------------------- 392 (435)
T ss_dssp CCBCEECSSSSCEEEECCCCTTSCCSS-------TTCCCCEEEECSSSCCEEE---------------------------
T ss_pred eEEEEEcCCCCEEEEEEcCCCCeEEEE-------ecCCCEEEEEECCCCcEEE---------------------------
Confidence 345678888887776643 33322110 1111123377777662111
Q ss_pred CCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeec-cccCCcceEEEEecCceeecC
Q psy8448 407 KLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGL-THHPHQNLLGTYSEDGLLRFS 482 (482)
Q Consensus 407 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~-~~sp~~~~l~s~~~Dg~i~iW 482 (482)
. ...+|...|.++ +|+|+|++||+|+ |++|+||
T Consensus 393 --------------------------------~----------l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW 426 (435)
T 4e54_B 393 --------------------------------Q----------LYDPESSGISSLNEFNPMGDTLASAM-GYHILIW 426 (435)
T ss_dssp --------------------------------E----------ECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEEC
T ss_pred --------------------------------E----------EeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEE
Confidence 0 223677888887 6999999999987 8899999
No 44
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.8e-39 Score=305.35 Aligned_cols=280 Identities=19% Similarity=0.308 Sum_probs=239.3
Q ss_pred CCCCc--EEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEE
Q psy8448 98 GSKSH--VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVK 175 (482)
Q Consensus 98 ~h~~~--v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~ 175 (482)
+|... +.+++|++ ..+++++.||.|++||+.+++....+... |...|++++|+|++++|++|+.||.|+
T Consensus 89 ~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~-------~~~~v~~v~~s~~~~~l~~~~~dg~i~ 159 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETD-------ESTYVASVKWSHDGSFLSVGLGNGLVD 159 (401)
T ss_dssp TCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECC-------TTCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecC-------CCCCEEEEEECCCCCEEEEECCCCeEE
Confidence 55554 44566664 56788889999999999998876655443 578899999999999999999999999
Q ss_pred EEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCC-CCceEEEeeccccceeEEEEcCCCCEEEEEe
Q psy8448 176 IWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLK-SGKMLKEFRGHSSFVNDITFTADGHSVLSAS 254 (482)
Q Consensus 176 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~ 254 (482)
+||+.+++.+..+ ..|...|.+++| ++..+++++.||.|++||++ ....+..+.+|...|.+++|+|++++|++++
T Consensus 160 iwd~~~~~~~~~~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 236 (401)
T 4aez_A 160 IYDVESQTKLRTM-AGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGG 236 (401)
T ss_dssp EEETTTCCEEEEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred EEECcCCeEEEEe-cCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence 9999999999888 689999999999 45799999999999999999 5667888899999999999999999999999
Q ss_pred CCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEe--CCCeEEEEEc-CCcEEEEecCCcccCcCEEEE
Q psy8448 255 SDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCN--KTNTVVIMNM-QGQIVRSLSSGKREGGDFLCC 331 (482)
Q Consensus 255 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~--~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~ 331 (482)
.|+.|++||+++++....+. .|...|.+++|+|++..++++++ .|+.|++||+ .++.+..+.. ...+.++
T Consensus 237 ~d~~v~iwd~~~~~~~~~~~---~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~----~~~v~~~ 309 (401)
T 4aez_A 237 NDNVVQIWDARSSIPKFTKT---NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA----GSQVTSL 309 (401)
T ss_dssp TTSCEEEEETTCSSEEEEEC---CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC----SSCEEEE
T ss_pred CCCeEEEccCCCCCccEEec---CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC----CCcEEEE
Confidence 99999999999998888776 78899999999999878888876 7999999999 6777777753 5679999
Q ss_pred EEcCCCCEEEEE--eCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCC
Q psy8448 332 TTSPRGEWIYCV--GEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLP 409 (482)
Q Consensus 332 ~~~~~g~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 409 (482)
+|+|++++++++ +.||.|++| +..++... .
T Consensus 310 ~~s~~~~~l~~~~g~~dg~i~v~------------------~~~~~~~~-----------------------------~- 341 (401)
T 4aez_A 310 IWSPHSKEIMSTHGFPDNNLSIW------------------SYSSSGLT-----------------------------K- 341 (401)
T ss_dssp EECSSSSEEEEEECTTTCEEEEE------------------EEETTEEE-----------------------------E-
T ss_pred EECCCCCeEEEEeecCCCcEEEE------------------ecCCccce-----------------------------e-
Confidence 999999999994 489999955 44443000 0
Q ss_pred chhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448 410 EKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS 482 (482)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW 482 (482)
.. .+.+|...|.+++|+|++++|++++.||.|++|
T Consensus 342 ----------------------------~~----------~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw 376 (401)
T 4aez_A 342 ----------------------------QV----------DIPAHDTRVLYSALSPDGRILSTAASDENLKFW 376 (401)
T ss_dssp ----------------------------EE----------EEECCSSCCCEEEECTTSSEEEEECTTSEEEEE
T ss_pred ----------------------------EE----------EecCCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 11 456899999999999999999999999999998
No 45
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=8.7e-39 Score=288.93 Aligned_cols=251 Identities=20% Similarity=0.236 Sum_probs=208.6
Q ss_pred eecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC--CCCEEEEEeCCC
Q psy8448 95 IKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR--DSEMLASGSQSG 172 (482)
Q Consensus 95 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~--~~~~l~~~~~dg 172 (482)
++.+|.+.|++++|+|+|++||+|+.|++|+|||+.+... .....+.+|.++|.+++|+| ++++|++|+.|+
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~------~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~ 77 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH------KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 77 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB------CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTT
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc------EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCC
Confidence 4569999999999999999999999999999999975421 12234556889999999986 489999999999
Q ss_pred cEEEEEcCCCe--EeEEeecccCCCeEEEEEccC--CCEEEEEECCCeEEEEeCCCCce--EEEeeccccceeEEEEcCC
Q psy8448 173 KVKIWKIATGQ--CLRKLEKAHSLGVTCIQFSRD--NSQILTASFDTYVRIHGLKSGKM--LKEFRGHSSFVNDITFTAD 246 (482)
Q Consensus 173 ~i~iwd~~~~~--~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~l~~~~~ 246 (482)
+|++||+++++ .+..+ ..|...|.+++|+|+ +.+|++++.|+.|++||++++.. ...+.+|...|.+++|+|+
T Consensus 78 ~v~iWd~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~ 156 (297)
T 2pm7_B 78 KVMIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 156 (297)
T ss_dssp EEEEEEBSSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCC
T ss_pred EEEEEEcCCCceEEEEEe-ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCC
Confidence 99999998874 44445 578999999999997 88999999999999999987642 4567789999999999997
Q ss_pred -------------CCEEEEEeCCCcEEEEECCCCc----eeeeeeccCCCccceeEEEEcCCC--CCEEEEEeCCCeEEE
Q psy8448 247 -------------GHSVLSASSDGTVKMWNLKTTE----CTSTFKSLGASDIAVNSIHLLPKN--TEHFVVCNKTNTVVI 307 (482)
Q Consensus 247 -------------~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~v~~i~~~~~~--~~~l~~~~~d~~i~i 307 (482)
+++|++++.|+.|++||+++++ ....+. +|...|.+++|+|++ ..++++++.|++|++
T Consensus 157 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~---~H~~~V~~v~~sp~~~~~~~las~s~D~~v~i 233 (297)
T 2pm7_B 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE---GHSDWVRDVAWSPTVLLRSYMASVSQDRTCII 233 (297)
T ss_dssp C------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC---CCSSCEEEEEECCCCSSSEEEEEEETTSCEEE
T ss_pred cccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec---CCCCceEEEEECCCCCCceEEEEEECCCcEEE
Confidence 5799999999999999998765 334444 899999999999985 478999999999999
Q ss_pred EEcCCc---EEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448 308 MNMQGQ---IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ 355 (482)
Q Consensus 308 ~d~~~~---~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~ 355 (482)
||++.. ..........+...|.+++|+|+|++|++++.||.|++|+..
T Consensus 234 Wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 234 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 999431 122222222346789999999999999999999999988654
No 46
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=8.4e-39 Score=295.41 Aligned_cols=281 Identities=19% Similarity=0.314 Sum_probs=222.1
Q ss_pred CCCCceeec--cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccc
Q psy8448 64 LPPGTTIDL--FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQ 141 (482)
Q Consensus 64 ~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 141 (482)
.|+|..++. .++.+.+|+....... ....+..+|...|++++|+|++++|++|+.|++|++|++.++....
T Consensus 25 sp~g~~las~~~D~~i~iw~~~~~~~~--~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~----- 97 (345)
T 3fm0_A 25 NPAGTLLASCGGDRRIRIWGTEGDSWI--CKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFEC----- 97 (345)
T ss_dssp CTTSSCEEEEETTSCEEEEEEETTEEE--EEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEE-----
T ss_pred CCCCCEEEEEcCCCeEEEEEcCCCcce--eeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEE-----
Confidence 344554443 3677888886544321 1123345899999999999999999999999999999988764321
Q ss_pred cccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe---EeEEeecccCCCeEEEEEccCCCEEEEEECCCeEE
Q psy8448 142 AQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ---CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVR 218 (482)
Q Consensus 142 ~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~ 218 (482)
...+.+|...|.+++|+|++++|++|+.|+.|++||+.++. .+..+ ..|...|.+++|+|++.+|++++.|+.|+
T Consensus 98 -~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~d~~i~ 175 (345)
T 3fm0_A 98 -VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVL-NSHTQDVKHVVWHPSQELLASASYDDTVK 175 (345)
T ss_dssp -EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEE-CCCCSCEEEEEECSSSSCEEEEETTSCEE
T ss_pred -EEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEe-cCcCCCeEEEEECCCCCEEEEEeCCCcEE
Confidence 22345678999999999999999999999999999998764 34444 68999999999999999999999999999
Q ss_pred EEeCCCCc--eEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc---------------eeeeeeccCCCcc
Q psy8448 219 IHGLKSGK--MLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTE---------------CTSTFKSLGASDI 281 (482)
Q Consensus 219 i~d~~~~~--~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~---------------~~~~~~~~~~~~~ 281 (482)
+||+++++ +...+.+|...|.+++|+|++++|++++.|++|++||..... ++..+. ..|..
T Consensus 176 ~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~ 253 (345)
T 3fm0_A 176 LYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLS--GFHSR 253 (345)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEEC--SSCSS
T ss_pred EEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEec--CCCCC
Confidence 99998875 456788999999999999999999999999999999964321 122222 13778
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-----EE--EEecCCcccCcCEEEEEEcCCC-CEEEEEeCCcEEEEEe
Q psy8448 282 AVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQ-----IV--RSLSSGKREGGDFLCCTTSPRG-EWIYCVGEDMVLVVRL 353 (482)
Q Consensus 282 ~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~-----~~--~~~~~~~~~~~~v~~~~~~~~g-~~l~~~~~dg~i~iw~ 353 (482)
.|.+++|+|++ ..+++++.|+.|++|+.... .. ........|...|.+++|+|++ .+|++|+.||.|++|+
T Consensus 254 ~v~~v~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~ 332 (345)
T 3fm0_A 254 TIYDIAWCQLT-GALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWK 332 (345)
T ss_dssp CEEEEEECTTT-CCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred cEEEEEEecCC-CEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEE
Confidence 99999999998 78999999999999998421 11 1111123357899999999998 5999999999999777
Q ss_pred ehh
Q psy8448 354 IQQ 356 (482)
Q Consensus 354 ~~~ 356 (482)
...
T Consensus 333 ~~~ 335 (345)
T 3fm0_A 333 YQR 335 (345)
T ss_dssp ECC
T ss_pred ecC
Confidence 653
No 47
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.4e-38 Score=300.68 Aligned_cols=279 Identities=19% Similarity=0.292 Sum_probs=236.6
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q psy8448 101 SHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIA 180 (482)
Q Consensus 101 ~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~ 180 (482)
-.++.|+||++ ++||+|. |++|+|||+.+++....+..+ +|...|++++|+|+|++|++|+.||.|++||+.
T Consensus 106 ~y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~------~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~ 177 (420)
T 4gga_A 106 YYLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQME------QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 177 (420)
T ss_dssp TTCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECC------STTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ccceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEec------CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcC
Confidence 34678999975 5788776 899999999999887666544 356789999999999999999999999999999
Q ss_pred CCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCC-ceEEEeeccccceeEEEEcCCCCEEEEEeCCCcE
Q psy8448 181 TGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSG-KMLKEFRGHSSFVNDITFTADGHSVLSASSDGTV 259 (482)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i 259 (482)
+++.+..+ .+|...+.+++++ +..+++|+.|+.+++||.+.. ..+..+.+|...+..+.++|+++++++++.|+.+
T Consensus 178 ~~~~~~~~-~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v 254 (420)
T 4gga_A 178 QQKRLRNM-TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLV 254 (420)
T ss_dssp TTEEEEEE-CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCcEEEEE-eCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccc
Confidence 99999988 6899999988875 679999999999999999865 4567788999999999999999999999999999
Q ss_pred EEEECCCCceee-eeeccCCCccceeEEEEcCCCCCEEEEE--eCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcC
Q psy8448 260 KMWNLKTTECTS-TFKSLGASDIAVNSIHLLPKNTEHFVVC--NKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSP 335 (482)
Q Consensus 260 ~i~d~~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~l~~~--~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~ 335 (482)
++||..+++... .+.....+...|.+++|+|.+..+++++ +.|+.|++||+ +++....+.. ...+.++.|+|
T Consensus 255 ~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~----~~~v~~~~~~~ 330 (420)
T 4gga_A 255 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA----HSQVCSILWSP 330 (420)
T ss_dssp EEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC----SSCEEEEEEET
T ss_pred eEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc----ccceeeeeecC
Confidence 999998875321 1222237888999999999987888765 47899999999 5777776664 45789999999
Q ss_pred CCCEEEEEe--CCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhh
Q psy8448 336 RGEWIYCVG--EDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKL 413 (482)
Q Consensus 336 ~g~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 413 (482)
+++.+++++ .|+.|+ +|+..++ +.
T Consensus 331 ~~~~lv~~sg~~d~~I~------------------iwd~~~~-------------------------------~~----- 356 (420)
T 4gga_A 331 HYKELISGHGFAQNQLV------------------IWKYPTM-------------------------------AK----- 356 (420)
T ss_dssp TTTEEEEEECTTTCCEE------------------EEETTTC-------------------------------CE-----
T ss_pred CCCeEEEEEecCCCEEE------------------EEECCCC-------------------------------cE-----
Confidence 999998765 789999 5666555 22
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448 414 IDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS 482 (482)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW 482 (482)
+. .+.+|.+.|++++|+|||++||||+.||+|+||
T Consensus 357 ------------------------v~----------~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriW 391 (420)
T 4gga_A 357 ------------------------VA----------ELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391 (420)
T ss_dssp ------------------------EE----------EECCCSSCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred ------------------------EE----------EEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 33 677999999999999999999999999999999
No 48
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-38 Score=288.50 Aligned_cols=276 Identities=19% Similarity=0.324 Sum_probs=235.7
Q ss_pred eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCc
Q psy8448 94 QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGK 173 (482)
Q Consensus 94 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~ 173 (482)
..+.+|.+.|++++| |++++|++|+.||.|++||+.+++....+. .|...|.+++|+|++++|++++.||.
T Consensus 12 ~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~ 82 (313)
T 3odt_A 12 ATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVY--------TGQGFLNSVCYDSEKELLLFGGKDTM 82 (313)
T ss_dssp EEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEE--------ECSSCEEEEEEETTTTEEEEEETTSC
T ss_pred HHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEee--------cCCccEEEEEECCCCCEEEEecCCCe
Confidence 445699999999999 999999999999999999998876655443 34789999999999999999999999
Q ss_pred EEEEEcCCC---eEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcC-CCCE
Q psy8448 174 VKIWKIATG---QCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTA-DGHS 249 (482)
Q Consensus 174 i~iwd~~~~---~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~-~~~~ 249 (482)
|++|++... +....+ ..|...|.+++| ++.++++++.|+.|++|| .++....+..|...+.+++|.| +++.
T Consensus 83 i~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~ 157 (313)
T 3odt_A 83 INGVPLFATSGEDPLYTL-IGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENK 157 (313)
T ss_dssp EEEEETTCCTTSCC-CEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTE
T ss_pred EEEEEeeecCCCCcccch-hhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCE
Confidence 999998654 445566 679999999999 577999999999999999 6778888899999999999998 8999
Q ss_pred EEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCE
Q psy8448 250 VLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDF 328 (482)
Q Consensus 250 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v 328 (482)
+++++.||.|++|| ..+....+.. .+...+.+++|+|++ . +++++.|+.|++||+ +++.+..+..+ ...+
T Consensus 158 l~~~~~d~~i~i~d--~~~~~~~~~~--~~~~~i~~~~~~~~~-~-~~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~i 228 (313)
T 3odt_A 158 FLTASADKTIKLWQ--NDKVIKTFSG--IHNDVVRHLAVVDDG-H-FISCSNDGLIKLVDMHTGDVLRTYEGH---ESFV 228 (313)
T ss_dssp EEEEETTSCEEEEE--TTEEEEEECS--SCSSCEEEEEEEETT-E-EEEEETTSEEEEEETTTCCEEEEEECC---SSCE
T ss_pred EEEEECCCCEEEEe--cCceEEEEec--cCcccEEEEEEcCCC-e-EEEccCCCeEEEEECCchhhhhhhhcC---CceE
Confidence 99999999999999 3445555542 378899999999998 4 999999999999999 57788777655 7889
Q ss_pred EEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCC
Q psy8448 329 LCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKL 408 (482)
Q Consensus 329 ~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 408 (482)
.+++|+|++ .|++++.||.|+ +|+..++ ++
T Consensus 229 ~~~~~~~~~-~l~~~~~dg~v~------------------iwd~~~~-------------------------------~~ 258 (313)
T 3odt_A 229 YCIKLLPNG-DIVSCGEDRTVR------------------IWSKENG-------------------------------SL 258 (313)
T ss_dssp EEEEECTTS-CEEEEETTSEEE------------------EECTTTC-------------------------------CE
T ss_pred EEEEEecCC-CEEEEecCCEEE------------------EEECCCC-------------------------------ce
Confidence 999999999 588999999999 5555555 22
Q ss_pred CchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448 409 PEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS 482 (482)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW 482 (482)
.. .+..|...|.+++|+|+++ +++++.||.|++|
T Consensus 259 -----------------------------~~----------~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw 292 (313)
T 3odt_A 259 -----------------------------KQ----------VITLPAISIWSVDCMSNGD-IIVGSSDNLVRIF 292 (313)
T ss_dssp -----------------------------EE----------EEECSSSCEEEEEECTTSC-EEEEETTSCEEEE
T ss_pred -----------------------------eE----------EEeccCceEEEEEEccCCC-EEEEeCCCcEEEE
Confidence 22 5667888999999999998 6678999999998
No 49
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-40 Score=311.46 Aligned_cols=242 Identities=9% Similarity=0.066 Sum_probs=194.8
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCC--ceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEE
Q psy8448 98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTG--KIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVK 175 (482)
Q Consensus 98 ~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~ 175 (482)
.|.++|++++|+|++++||+|+.|+.|++||+.++ +... .+.+|...|.+++|+|++++|++++.|+.|+
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~--------~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~ 80 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR--------TFSDHDKIVTCVDWAPKSNRIVTCSQDRNAY 80 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC--------CBCCCSSCEEEEEECTTTCCEEEEETTSSEE
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE--------EEecCCceEEEEEEeCCCCEEEEEeCCCeEE
Confidence 46789999999999999999999999999999877 3333 3345789999999999999999999999999
Q ss_pred EEEcCCCe---EeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCc---eEEEeec-cccceeEEEEcCCCC
Q psy8448 176 IWKIATGQ---CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGK---MLKEFRG-HSSFVNDITFTADGH 248 (482)
Q Consensus 176 iwd~~~~~---~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~-~~~~i~~l~~~~~~~ 248 (482)
+||+.+++ ....+ ..|...|.+++|+|++++|++++.|+.|++||+++++ ....+.. |...|.+++|+|+++
T Consensus 81 vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 159 (377)
T 3dwl_C 81 VYEKRPDGTWKQTLVL-LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV 159 (377)
T ss_dssp EC------CCCCEEEC-CCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS
T ss_pred EEEcCCCCceeeeeEe-cccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC
Confidence 99998877 45555 5799999999999999999999999999999999887 3677777 999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCc---------------eeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-C
Q psy8448 249 SVLSASSDGTVKMWNLKTTE---------------CTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-G 312 (482)
Q Consensus 249 ~l~~~~~dg~i~i~d~~~~~---------------~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~ 312 (482)
+|++++.|+.|++||++..+ ........ .|...|.+++|+|++ .++++++.|+.|++||+. +
T Consensus 160 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~ 237 (377)
T 3dwl_C 160 LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSG-NALAYAGHDSSVTIAYPSAP 237 (377)
T ss_dssp EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTS-SCEEEEETTTEEC-CEECST
T ss_pred EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCC-CEEEEEeCCCcEEEEECCCC
Confidence 99999999999999986322 11122222 788899999999998 799999999999999994 4
Q ss_pred cE----EEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448 313 QI----VRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLI 354 (482)
Q Consensus 313 ~~----~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~ 354 (482)
+. +..+.. +...|.+++|+|++++|++++.++.+ +|+.
T Consensus 238 ~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~ 279 (377)
T 3dwl_C 238 EQPPRALITVKL---SQLPLRSLLWANESAIVAAGYNYSPI-LLQG 279 (377)
T ss_dssp TSCEEECCCEEC---SSSCEEEEEEEETTEEEEEESSSSEE-EECC
T ss_pred CCcceeeEeecC---CCCceEEEEEcCCCCEEEEEcCCcEE-EEEe
Confidence 44 333433 47789999999999999999887777 4443
No 50
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-40 Score=313.58 Aligned_cols=288 Identities=14% Similarity=0.258 Sum_probs=239.7
Q ss_pred CCCCcEEEEEEcCCCC-EEEEE----------eCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEE
Q psy8448 98 GSKSHVECARFSPDGQ-YLITG----------SVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLA 166 (482)
Q Consensus 98 ~h~~~v~~~~~s~~~~-~l~s~----------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~ 166 (482)
.+...|.+++|+|+++ +|++| +.|+.|+|||+.+++...... ...|...|++++|+|++++|+
T Consensus 10 ~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~------~~~~~~~v~~~~~s~~~~~l~ 83 (416)
T 2pm9_A 10 AEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIA------SLQVDSKFNDLDWSHNNKIIA 83 (416)
T ss_dssp CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSC------CCCCSSCEEEEEECSSSSCEE
T ss_pred hhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEE------EEecCCceEEEEECCCCCeEE
Confidence 3456789999999987 99999 889999999998876331111 113578999999999999999
Q ss_pred EEeCCCcEEEEEcCC----CeEeEEeecccCCCeEEEEEccC-CCEEEEEECCCeEEEEeCCCCc------eEE---Eee
Q psy8448 167 SGSQSGKVKIWKIAT----GQCLRKLEKAHSLGVTCIQFSRD-NSQILTASFDTYVRIHGLKSGK------MLK---EFR 232 (482)
Q Consensus 167 ~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~------~~~---~~~ 232 (482)
+++.||.|++||+.+ .+....+ ..|...|.+++|+|+ +.+|++++.|+.|++||+++++ ... .+.
T Consensus 84 ~~~~dg~v~vw~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 162 (416)
T 2pm9_A 84 GALDNGSLELYSTNEANNAINSMARF-SNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSM 162 (416)
T ss_dssp EEESSSCEEEECCSSTTSCCCEEEEC-CCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSC
T ss_pred EEccCCeEEEeecccccccccchhhc-cCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccccccc
Confidence 999999999999987 3466666 689999999999998 8999999999999999999886 333 236
Q ss_pred ccccceeEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeeeeeccC---CCccceeEEEEcCCCCCEEEEEeCCC---eE
Q psy8448 233 GHSSFVNDITFTAD-GHSVLSASSDGTVKMWNLKTTECTSTFKSLG---ASDIAVNSIHLLPKNTEHFVVCNKTN---TV 305 (482)
Q Consensus 233 ~~~~~i~~l~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~~l~~~~~d~---~i 305 (482)
.|...|.+++|+|+ +.+|++++.||.|++||+++++.+..+.... +|...+.+++|+|++..++++++.|+ .|
T Consensus 163 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i 242 (416)
T 2pm9_A 163 SSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSI 242 (416)
T ss_dssp CSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCC
T ss_pred CCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceE
Confidence 78999999999998 7899999999999999999998887776321 12788999999999878999999998 99
Q ss_pred EEEEcC-C-cEEEEecCCcccCcCEEEEEEcC-CCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeeccc
Q psy8448 306 VIMNMQ-G-QIVRSLSSGKREGGDFLCCTTSP-RGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVD 382 (482)
Q Consensus 306 ~i~d~~-~-~~~~~~~~~~~~~~~v~~~~~~~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (482)
++||++ + ..+..+.. .|...|.+++|+| ++++|++++.||.|+ +|+..++
T Consensus 243 ~~~d~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~s~~~dg~v~------------------~wd~~~~------- 295 (416)
T 2pm9_A 243 LIWDLRNANTPLQTLNQ--GHQKGILSLDWCHQDEHLLLSSGRDNTVL------------------LWNPESA------- 295 (416)
T ss_dssp CEEETTSTTSCSBCCCS--CCSSCEEEEEECSSCSSCEEEEESSSEEE------------------EECSSSC-------
T ss_pred EEEeCCCCCCCcEEeec--CccCceeEEEeCCCCCCeEEEEeCCCCEE------------------EeeCCCC-------
Confidence 999995 3 44444441 2378899999999 999999999999999 5555555
Q ss_pred ccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeecc
Q psy8448 383 SVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLT 462 (482)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 462 (482)
+. .. .+.+|...|++++
T Consensus 296 ------------------------~~-----------------------------~~----------~~~~~~~~v~~~~ 312 (416)
T 2pm9_A 296 ------------------------EQ-----------------------------LS----------QFPARGNWCFKTK 312 (416)
T ss_dssp ------------------------CE-----------------------------EE----------EEECSSSCCCCEE
T ss_pred ------------------------cc-----------------------------ce----------eecCCCCceEEEE
Confidence 22 22 6678999999999
Q ss_pred ccCCc-ceEEEEecCceeecC
Q psy8448 463 HHPHQ-NLLGTYSEDGLLRFS 482 (482)
Q Consensus 463 ~sp~~-~~l~s~~~Dg~i~iW 482 (482)
|+|++ ++|++++.||.|++|
T Consensus 313 ~s~~~~~~l~s~~~d~~i~iw 333 (416)
T 2pm9_A 313 FAPEAPDLFACASFDNKIEVQ 333 (416)
T ss_dssp ECTTCTTEEEECCSSSEEEEE
T ss_pred ECCCCCCEEEEEecCCcEEEE
Confidence 99999 899999999999998
No 51
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.9e-39 Score=304.43 Aligned_cols=286 Identities=13% Similarity=0.209 Sum_probs=237.4
Q ss_pred CCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEec----CCCce------eecccc--ccccccccccccEEEEEEcCCCCE
Q psy8448 98 GSKSHVECARFSPDGQ-YLITGSVDGFIEVWNF----TTGKI------RKDLKY--QAQDNFMLMEEAVMSLAYSRDSEM 164 (482)
Q Consensus 98 ~h~~~v~~~~~s~~~~-~l~s~~~dg~v~iwd~----~~~~~------~~~~~~--~~~~~~~~h~~~i~~l~~~~~~~~ 164 (482)
.|.+.|++++|+|+++ +||+|+.||.|++|++ .+++. ...+.. .......+|...|++++|+|++++
T Consensus 43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 122 (425)
T 1r5m_A 43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNS 122 (425)
T ss_dssp EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSE
T ss_pred eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCE
Confidence 5678999999999999 9999999999999999 87772 222221 111122336789999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccc-------
Q psy8448 165 LASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSF------- 237 (482)
Q Consensus 165 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------- 237 (482)
|++++.||.|++|| .+++.+..+ ..|...|.+++|+|++++|++++.|+.|++||+++++.+..+..+...
T Consensus 123 l~~~~~dg~i~i~~-~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 200 (425)
T 1r5m_A 123 IVTGVENGELRLWN-KTGALLNVL-NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAE 200 (425)
T ss_dssp EEEEETTSCEEEEE-TTSCEEEEE-CCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC----------
T ss_pred EEEEeCCCeEEEEe-CCCCeeeec-cCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeec
Confidence 99999999999999 677777777 689999999999999999999999999999999999999888877776
Q ss_pred --------eeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEE
Q psy8448 238 --------VNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMN 309 (482)
Q Consensus 238 --------i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d 309 (482)
+.+++|+|++ .+++++.+|.|++||+++++....+. .|...|.+++|+|++ .++++++.|+.|++||
T Consensus 201 ~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~---~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d 275 (425)
T 1r5m_A 201 NHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLI---GHHGPISVLEFNDTN-KLLLSASDDGTLRIWH 275 (425)
T ss_dssp -----CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEEC---CCSSCEEEEEEETTT-TEEEEEETTSCEEEEC
T ss_pred cccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeec---cCCCceEEEEECCCC-CEEEEEcCCCEEEEEE
Confidence 9999999975 58899999999999999988877776 788999999999998 7999999999999999
Q ss_pred c-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccce
Q psy8448 310 M-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFI 388 (482)
Q Consensus 310 ~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (482)
+ .++.+..+..+ ...+.+++|+|++ ++++++.||.|+ +|+..++
T Consensus 276 ~~~~~~~~~~~~~---~~~i~~~~~~~~~-~l~~~~~d~~i~------------------i~d~~~~------------- 320 (425)
T 1r5m_A 276 GGNGNSQNCFYGH---SQSIVSASWVGDD-KVISCSMDGSVR------------------LWSLKQN------------- 320 (425)
T ss_dssp SSSBSCSEEECCC---SSCEEEEEEETTT-EEEEEETTSEEE------------------EEETTTT-------------
T ss_pred CCCCccceEecCC---CccEEEEEECCCC-EEEEEeCCCcEE------------------EEECCCC-------------
Confidence 9 45666666544 7789999999999 999999999999 5555444
Q ss_pred eccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcc
Q psy8448 389 ADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQN 468 (482)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~ 468 (482)
+. .. .+..|...|.+++|+|+++
T Consensus 321 ------------------~~-----------------------------~~----------~~~~~~~~i~~~~~s~~~~ 343 (425)
T 1r5m_A 321 ------------------TL-----------------------------LA----------LSIVDGVPIFAGRISQDGQ 343 (425)
T ss_dssp ------------------EE-----------------------------EE----------EEECTTCCEEEEEECTTSS
T ss_pred ------------------cE-----------------------------eE----------ecccCCccEEEEEEcCCCC
Confidence 11 22 5567888999999999999
Q ss_pred eEEEEecCceeecC
Q psy8448 469 LLGTYSEDGLLRFS 482 (482)
Q Consensus 469 ~l~s~~~Dg~i~iW 482 (482)
+|++++.||.|++|
T Consensus 344 ~l~~~~~dg~i~i~ 357 (425)
T 1r5m_A 344 KYAVAFMDGQVNVY 357 (425)
T ss_dssp EEEEEETTSCEEEE
T ss_pred EEEEEECCCeEEEE
Confidence 99999999999998
No 52
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.1e-39 Score=303.24 Aligned_cols=290 Identities=12% Similarity=0.118 Sum_probs=217.5
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCC-------eEEEEecCCCceeecc--ccccccccccccccEEEEEEcCCCCEEEEEe-
Q psy8448 100 KSHVECARFSPDGQYLITGSVDG-------FIEVWNFTTGKIRKDL--KYQAQDNFMLMEEAVMSLAYSRDSEMLASGS- 169 (482)
Q Consensus 100 ~~~v~~~~~s~~~~~l~s~~~dg-------~v~iwd~~~~~~~~~~--~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~- 169 (482)
.-||+|++|+||+++|++|+.+. .|++|++..+...... .......+.+|+..+.+++++ ++.+++|.
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 45899999999999999997543 5999999866543221 112222355677888888765 55666654
Q ss_pred ----------CCCcEEEEEcCCCeEeEEee--------cccCCCeEEEEEccCCCEEEEEE--CCCeEEEEeCCCCceEE
Q psy8448 170 ----------QSGKVKIWKIATGQCLRKLE--------KAHSLGVTCIQFSRDNSQILTAS--FDTYVRIHGLKSGKMLK 229 (482)
Q Consensus 170 ----------~dg~i~iwd~~~~~~~~~~~--------~~~~~~v~~i~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~ 229 (482)
.|+.+++|++.......... ..+...+.+++|+|||+++++++ .|+.|++||+++++++.
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~ 171 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF 171 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence 46789999986543221110 12345689999999999987654 68999999999999988
Q ss_pred EeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCC----eE
Q psy8448 230 EFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTN----TV 305 (482)
Q Consensus 230 ~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~----~i 305 (482)
.+. |.+.|.+++|+|+|+++++++.+ .+.+|+..+++...... ...|...|.+++|+|++ ..+++++.++ .+
T Consensus 172 ~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~-~~~~~~~v~~v~fspdg-~~l~~~s~d~~~~~~i 247 (365)
T 4h5i_A 172 EIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKT-DFDKNWSLSKINFIADD-TVLIAASLKKGKGIVL 247 (365)
T ss_dssp EEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEEC-CCCTTEEEEEEEEEETT-EEEEEEEESSSCCEEE
T ss_pred EeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeee-cCCCCCCEEEEEEcCCC-CEEEEEecCCcceeEE
Confidence 886 77889999999999999998855 57777777776554322 22678899999999999 7888888776 68
Q ss_pred EEEEcC-CcE-EEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccc
Q psy8448 306 VIMNMQ-GQI-VRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDS 383 (482)
Q Consensus 306 ~i~d~~-~~~-~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (482)
++|+.. ... .........+...|++++|+|||++||+|+.|+.|+ +|++.+++.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~------------------iwd~~~~~~~----- 304 (365)
T 4h5i_A 248 TKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIA------------------LVKLKDLSMS----- 304 (365)
T ss_dssp EEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEE------------------EEETTTTEEE-----
T ss_pred eecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEE------------------EEECCCCcEE-----
Confidence 889884 322 111111222377899999999999999999999999 6666666111
Q ss_pred cccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccc
Q psy8448 384 VDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTH 463 (482)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 463 (482)
.. .+.+|...|++++|
T Consensus 305 ------------------------------------------------------~~----------~~~gH~~~V~~v~f 320 (365)
T 4h5i_A 305 ------------------------------------------------------KI----------FKQAHSFAITEVTI 320 (365)
T ss_dssp ------------------------------------------------------EE----------ETTSSSSCEEEEEE
T ss_pred ------------------------------------------------------EE----------ecCcccCCEEEEEE
Confidence 11 34689999999999
Q ss_pred cCCcceEEEEecCceeecC
Q psy8448 464 HPHQNLLGTYSEDGLLRFS 482 (482)
Q Consensus 464 sp~~~~l~s~~~Dg~i~iW 482 (482)
||||++|||||.|++||||
T Consensus 321 Spdg~~laS~S~D~tvrvw 339 (365)
T 4h5i_A 321 SPDSTYVASVSAANTIHII 339 (365)
T ss_dssp CTTSCEEEEEETTSEEEEE
T ss_pred CCCCCEEEEEeCCCeEEEE
Confidence 9999999999999999998
No 53
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-38 Score=288.57 Aligned_cols=273 Identities=17% Similarity=0.259 Sum_probs=207.3
Q ss_pred cCCccccccccccccccccceeeecC-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccc
Q psy8448 73 FRGKAAMKDQEEEKYPTQLSKQIKFG-SKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEE 151 (482)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~ 151 (482)
.++.+.+|+...... .....+..+ |...|++++|+|++++|++|+.|++|+|||+...... .........+.+|..
T Consensus 32 ~D~~i~lw~~~~~~~--~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~-~~~~~~~~~~~~h~~ 108 (330)
T 2hes_X 32 TDRKIKLVSVKYDDF--TLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADR-TFEMDLLAIIEGHEN 108 (330)
T ss_dssp SSSCEEEEECSSSCC--EEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC--------CCCEEEEEEC----
T ss_pred CCCEEEEEEecCCCe--EEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCc-cccceeEEEEcCCCC
Confidence 367788888654321 122223234 9999999999999999999999999999998643210 011122334567899
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCC----eEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCC--
Q psy8448 152 AVMSLAYSRDSEMLASGSQSGKVKIWKIATG----QCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSG-- 225 (482)
Q Consensus 152 ~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-- 225 (482)
.|.+++|+|++++|++|+.|++|++||+... +.+..+ ..|...|.+++|+|++.+|++++.|+.|++||.+++
T Consensus 109 ~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~ 187 (330)
T 2hes_X 109 EVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVL-QEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDW 187 (330)
T ss_dssp CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEE-CCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEe-ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCe
Confidence 9999999999999999999999999999432 445556 689999999999999999999999999999999876
Q ss_pred ceEEEeeccccceeEEEEcCC--CCEEEEEeCCCcEEEEECCCC--------ceeeeeeccCCCccceeEEEEcCCCCCE
Q psy8448 226 KMLKEFRGHSSFVNDITFTAD--GHSVLSASSDGTVKMWNLKTT--------ECTSTFKSLGASDIAVNSIHLLPKNTEH 295 (482)
Q Consensus 226 ~~~~~~~~~~~~i~~l~~~~~--~~~l~~~~~dg~i~i~d~~~~--------~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 295 (482)
+++..+.+|...|.+++|+|+ +..|++++.|++|++||++.+ .+...+. ..|...|.+++|+++ .+
T Consensus 188 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~v~~s~~--~~ 263 (330)
T 2hes_X 188 ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILP--DVHKRQVYNVAWGFN--GL 263 (330)
T ss_dssp EEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECC--SCCSSCEEEEEECTT--SC
T ss_pred eEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecc--cccccceEEEEEcCC--CE
Confidence 678889999999999999998 678999999999999998754 2222222 137889999999975 48
Q ss_pred EEEEeCCCeEEEEEcC-Cc--EEEEecCCcccCc-CEEEEEEcC--CCCEEEEEeCCcEEEEEeeh
Q psy8448 296 FVVCNKTNTVVIMNMQ-GQ--IVRSLSSGKREGG-DFLCCTTSP--RGEWIYCVGEDMVLVVRLIQ 355 (482)
Q Consensus 296 l~~~~~d~~i~i~d~~-~~--~~~~~~~~~~~~~-~v~~~~~~~--~g~~l~~~~~dg~i~iw~~~ 355 (482)
+++++.|+.|++|+.. +. ....... .|.. .|.+++|+| ++++|++|+.||.|++|+++
T Consensus 264 l~s~~~dg~v~iw~~~~~~~~~~~~~~~--~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 264 IASVGADGVLAVYEEVDGEWKVFAKRAL--CHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLE 327 (330)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEESC--TTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC-
T ss_pred EEEEeCCCEEEEEEcCCCceEEEecccc--ccccceEEEEEEecCCCceEEEEecCCCcEEEEEec
Confidence 9999999999999994 42 2222222 2244 899999999 78999999999999987764
No 54
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.9e-37 Score=291.63 Aligned_cols=240 Identities=29% Similarity=0.441 Sum_probs=209.4
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy8448 99 SKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWK 178 (482)
Q Consensus 99 h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd 178 (482)
+...|++++|+|+|++|++|+.|+.|++||+.+++....+ .+|...|.+++|+|++++|++++.|++|++||
T Consensus 122 ~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~--------~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd 193 (393)
T 1erj_A 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMIL--------QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD 193 (393)
T ss_dssp CCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE--------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE--------ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEE
Confidence 3445999999999999999999999999999988765443 34678999999999999999999999999999
Q ss_pred cCCCeEeEEeecccCCCeEEEEEcc-CCCEEEEEECCCeEEEEeCCCCceEEEe-------eccccceeEEEEcCCCCEE
Q psy8448 179 IATGQCLRKLEKAHSLGVTCIQFSR-DNSQILTASFDTYVRIHGLKSGKMLKEF-------RGHSSFVNDITFTADGHSV 250 (482)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~i~~l~~~~~~~~l 250 (482)
+++++....+. +...+.+++|+| ++.+|++|+.|+.|++||+++++.+..+ .+|...|.+++|+|++++|
T Consensus 194 ~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l 271 (393)
T 1erj_A 194 LRTGQCSLTLS--IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV 271 (393)
T ss_dssp TTTTEEEEEEE--CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEE
T ss_pred CCCCeeEEEEE--cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEE
Confidence 99998877763 667899999999 8999999999999999999999887766 5789999999999999999
Q ss_pred EEEeCCCcEEEEECCCCc------------eeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEE
Q psy8448 251 LSASSDGTVKMWNLKTTE------------CTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRS 317 (482)
Q Consensus 251 ~~~~~dg~i~i~d~~~~~------------~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~ 317 (482)
++++.|+.|++||+++.. +...+. +|...|.+++|+|++ .++++++.|+.|++||. .++.+..
T Consensus 272 ~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~-~~l~sgs~D~~v~iwd~~~~~~~~~ 347 (393)
T 1erj_A 272 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI---GHKDFVLSVATTQND-EYILSGSKDRGVLFWDKKSGNPLLM 347 (393)
T ss_dssp EEEETTSEEEEEEC---------------CEEEEEE---CCSSCEEEEEECGGG-CEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEe---cccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCCCeEEEE
Confidence 999999999999998643 233343 788899999999998 89999999999999999 6777777
Q ss_pred ecCCcccCcCEEEEEEcC------CCCEEEEEeCCcEEEEEeeh
Q psy8448 318 LSSGKREGGDFLCCTTSP------RGEWIYCVGEDMVLVVRLIQ 355 (482)
Q Consensus 318 ~~~~~~~~~~v~~~~~~~------~g~~l~~~~~dg~i~iw~~~ 355 (482)
+..| ...|.+++|++ ++++|++|+.||.|++|+++
T Consensus 348 l~~h---~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 348 LQGH---RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp EECC---SSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred ECCC---CCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence 7765 77899999876 68899999999999988765
No 55
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-38 Score=325.14 Aligned_cols=247 Identities=13% Similarity=0.115 Sum_probs=202.9
Q ss_pred eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCc
Q psy8448 94 QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGK 173 (482)
Q Consensus 94 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~ 173 (482)
....+|...|++++|+|++++||+|+.||+|+||+..+.+....+. |...|.+++|+| +++|++++.|++
T Consensus 11 ~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~---------~~~~V~~l~fsp-g~~L~S~s~D~~ 80 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE---------DRSAIKEMRFVK-GIYLVVINAKDT 80 (902)
T ss_dssp EEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS---------SCCCEEEEEEET-TTEEEEEETTCE
T ss_pred ccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC---------CCCCEEEEEEcC-CCEEEEEECcCe
Confidence 3445999999999999999999999999999999988765443221 467899999999 889999999999
Q ss_pred EEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceE-----------EEeeccccceeEEE
Q psy8448 174 VKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKML-----------KEFRGHSSFVNDIT 242 (482)
Q Consensus 174 i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----------~~~~~~~~~i~~l~ 242 (482)
|++||+.+++.+..+. |...|++++|+|++++|++|+.||.|++||+++++.. ..+.+|.+.|.+++
T Consensus 81 v~lWd~~~~~~~~~~~--~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~ 158 (902)
T 2oaj_A 81 VYVLSLYSQKVLTTVF--VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQ 158 (902)
T ss_dssp EEEEETTTCSEEEEEE--CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEE
T ss_pred EEEEECCCCcEEEEEc--CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEE
Confidence 9999999999888873 6688999999999999999999999999999988753 23456889999999
Q ss_pred EcCC-CCEEEEEeCCCcEEEEECCCCceeeeeecc---------------CCCccceeEEEEcCCCCCEEEEEeCCCeEE
Q psy8448 243 FTAD-GHSVLSASSDGTVKMWNLKTTECTSTFKSL---------------GASDIAVNSIHLLPKNTEHFVVCNKTNTVV 306 (482)
Q Consensus 243 ~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------------~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~ 306 (482)
|+|+ +..|++++.||.| +||++++++...+... ..|...|.+++|+|++ .+|++++.|+.|+
T Consensus 159 ~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~ 236 (902)
T 2oaj_A 159 WNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLV 236 (902)
T ss_dssp EETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEE
T ss_pred EccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC-CEEEEEECCCeEE
Confidence 9996 5789999999999 9999999888777522 1235779999999998 8999999999999
Q ss_pred EEEc-CCcEEEE--ecC---Cc----------ccCcCEEEEEEc----CCC-CEEEEEeCC-----cEEEEEee
Q psy8448 307 IMNM-QGQIVRS--LSS---GK----------REGGDFLCCTTS----PRG-EWIYCVGED-----MVLVVRLI 354 (482)
Q Consensus 307 i~d~-~~~~~~~--~~~---~~----------~~~~~v~~~~~~----~~g-~~l~~~~~d-----g~i~iw~~ 354 (482)
+||+ +++.+.. +.. +. .+...|.+++|+ |++ .+|++|+.| ..+.+|++
T Consensus 237 lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 237 FWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL 310 (902)
T ss_dssp EEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred EEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence 9999 5666543 211 11 124579999995 553 567777665 37878874
No 56
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.2e-39 Score=303.40 Aligned_cols=285 Identities=18% Similarity=0.270 Sum_probs=233.0
Q ss_pred CCCCceeec--cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccc
Q psy8448 64 LPPGTTIDL--FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQ 141 (482)
Q Consensus 64 ~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 141 (482)
.|+|..+.. .++.+.+|+...... .....+|...|.+++|+|++++|++|+.|+.|++||+.+..... -...
T Consensus 75 sp~~~~l~s~s~D~~v~iWd~~~~~~-----~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~-~~~~ 148 (380)
T 3iz6_a 75 TPEKNWIVSASQDGRLIVWNALTSQK-----THAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRD-GNMP 148 (380)
T ss_dssp CTTSSCEEEEETTSEEEEEETTTTEE-----EEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCC-CSST
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCcc-----ceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCcccc-CCcc
Confidence 466655544 367788998654332 22334899999999999999999999999999999997643211 1112
Q ss_pred cccccccccccEEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCeEeEEee----cccCCCeEEEEEcc-CCCEEEEEECCC
Q psy8448 142 AQDNFMLMEEAVMSLAYSRD-SEMLASGSQSGKVKIWKIATGQCLRKLE----KAHSLGVTCIQFSR-DNSQILTASFDT 215 (482)
Q Consensus 142 ~~~~~~~h~~~i~~l~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~~v~~i~~~~-~~~~l~~~~~dg 215 (482)
....+.+|...|.++.|+|+ +..|++|+.|++|++||+.+++.+..+. .+|...|.+++|++ ++.+|++|+.|+
T Consensus 149 ~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~ 228 (380)
T 3iz6_a 149 VSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDT 228 (380)
T ss_dssp TCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTS
T ss_pred ceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCC
Confidence 23356678999999999996 4579999999999999999998877662 46888999999987 789999999999
Q ss_pred eEEEEeCC-CCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccC----CCccceeEEEEcC
Q psy8448 216 YVRIHGLK-SGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLG----ASDIAVNSIHLLP 290 (482)
Q Consensus 216 ~i~i~d~~-~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~~~v~~i~~~~ 290 (482)
.|++||++ ..+.+..+.+|.+.|.+++|+|++++|++++.||+|++||+++++.+..+.... .+...|.+++|+|
T Consensus 229 ~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 308 (380)
T 3iz6_a 229 TVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI 308 (380)
T ss_dssp CEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECS
T ss_pred eEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECC
Confidence 99999998 457788899999999999999999999999999999999999998877765321 1223589999999
Q ss_pred CCCCEEEEEeCCCeEEEEEc-CCcEEEEecCC-cccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448 291 KNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSG-KREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ 355 (482)
Q Consensus 291 ~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~-~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~ 355 (482)
++ .++++++.||.|++||. .++.+..+... ..|...|.+++|+|+|++|++|+.||.|++|++.
T Consensus 309 ~g-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 309 SG-RLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp SS-SEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred CC-CEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence 99 89999999999999999 56666666322 3457899999999999999999999999977654
No 57
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=8.3e-38 Score=312.41 Aligned_cols=341 Identities=18% Similarity=0.276 Sum_probs=266.7
Q ss_pred CCccccccccccccccccceeeecCCCCc-EEEEEEcC--CCCEEEEEeCCCeEEEEecCCCceeecccccccccccccc
Q psy8448 74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSH-VECARFSP--DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLME 150 (482)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~s~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~ 150 (482)
++.+.+|+......+.... ..+.+|... |++++|+| ++++|++|+.||.|++||+.+++............+..|.
T Consensus 38 ~~~v~v~~~~~~~~~~~~~-~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~ 116 (615)
T 1pgu_A 38 GKSAFVRCLDDGDSKVPPV-VQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLA 116 (615)
T ss_dssp TTEEEEEECCSSCCSSCSE-EEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCS
T ss_pred CCeEEEEECCCCCCccccc-eEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhccc
Confidence 5567788876442222222 334589999 99999999 9999999999999999999765211111112222334567
Q ss_pred ccEEEEEEcCCCCEEEEEeCC----CcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCC-EEEEEECCCeEEEEeCCCC
Q psy8448 151 EAVMSLAYSRDSEMLASGSQS----GKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNS-QILTASFDTYVRIHGLKSG 225 (482)
Q Consensus 151 ~~i~~l~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~ 225 (482)
..|.+++|+|++++|++++.+ +.|.+|| .++.+..+ ..|...|.+++|+|+++ .+++++.|+.|++||++++
T Consensus 117 ~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~ 193 (615)
T 1pgu_A 117 GPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEV-SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF 193 (615)
T ss_dssp SCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEEC-CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB
T ss_pred ccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceee-ecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc
Confidence 899999999999999999987 6888887 56677777 68999999999999997 8999999999999999999
Q ss_pred ceEEEeecccc---ceeEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeeee-eccCCCccceeEEEEcCCCCCEEEEEe
Q psy8448 226 KMLKEFRGHSS---FVNDITFTAD-GHSVLSASSDGTVKMWNLKTTECTSTF-KSLGASDIAVNSIHLLPKNTEHFVVCN 300 (482)
Q Consensus 226 ~~~~~~~~~~~---~i~~l~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~l~~~~ 300 (482)
+.+..+.+|.. .|.+++|+|+ +++|++++.||.|++||+++++.+..+ .....|...|.+++|+ ++ .++++++
T Consensus 194 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~ 271 (615)
T 1pgu_A 194 KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DS-QKFATVG 271 (615)
T ss_dssp EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SS-SEEEEEE
T ss_pred ceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CC-CEEEEEc
Confidence 99999999999 9999999999 999999999999999999999887776 2212577899999999 66 8999999
Q ss_pred CCCeEEEEEc-CCcEEEEecCC-cccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeeccccee
Q psy8448 301 KTNTVVIMNM-QGQIVRSLSSG-KREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSL 378 (482)
Q Consensus 301 ~d~~i~i~d~-~~~~~~~~~~~-~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (482)
.|+.|++||+ +++.+..+..+ ......+.++.|. +++++++++.||.|++|++ .++..+
T Consensus 272 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~------------------~~~~~~ 332 (615)
T 1pgu_A 272 ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYEL------------------GHDEVL 332 (615)
T ss_dssp TTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEET------------------TEEEEE
T ss_pred CCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEEC------------------CCCcEE
Confidence 9999999999 57777777654 2234677888886 8999999999999996654 444444
Q ss_pred ecccccccceec-----cCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCccee
Q psy8448 379 NTVDSVDGFIAD-----INNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEV 453 (482)
Q Consensus 379 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (482)
..+..+.+.+.. ++.++.++.++.|+.. ++ . .+
T Consensus 333 ~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~----------------------------------------~~-~-~~ 370 (615)
T 1pgu_A 333 KTISGHNKGITALTVNPLISGSYDGRIMEWSSS----------------------------------------SM-H-QD 370 (615)
T ss_dssp EEECCCSSCEEEEETTTTEEEETTSCEEETTTT----------------------------------------EE-E-CC
T ss_pred EEEeCCCCCEEEEEecCcEEECCCCeEEEEEch----------------------------------------hh-c-Cc
Confidence 444444444443 4444455555444221 11 3 68
Q ss_pred cccceeeccccCCcceEEEEecCceeecC
Q psy8448 454 HEKLVIGLTHHPHQNLLGTYSEDGLLRFS 482 (482)
Q Consensus 454 h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW 482 (482)
|...|.+++| ++++.|++++.||.|++|
T Consensus 371 ~~~~v~~~~~-~~~~~l~~~~~d~~i~~~ 398 (615)
T 1pgu_A 371 HSNLIVSLDN-SKAQEYSSISWDDTLKVN 398 (615)
T ss_dssp CCSCEEEEEC-CSTTCCEEEETTTEEEET
T ss_pred ccCceEEEEE-CCCcEEEEEeCCCCEEEE
Confidence 9999999999 667899999999999998
No 58
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.8e-37 Score=283.55 Aligned_cols=277 Identities=19% Similarity=0.293 Sum_probs=229.9
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q psy8448 103 VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATG 182 (482)
Q Consensus 103 v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~ 182 (482)
.++|+||+++ +||+|. |++|+|||+.+++....+..+ +|...|++++|+|++++|++|+.||.|++||++++
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~------~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~ 99 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQME------QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ 99 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECC------STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEec------CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc
Confidence 5789999986 777765 999999999999987766544 35788999999999999999999999999999999
Q ss_pred eEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCC-ceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEE
Q psy8448 183 QCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSG-KMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKM 261 (482)
Q Consensus 183 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i 261 (482)
+.+..+ .+|...+.++.+ ++..+++++.++.+++|+.... ..+..+.+|...+..+.+.+++++|++++.|+.|++
T Consensus 100 ~~~~~~-~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i 176 (318)
T 4ggc_A 100 KRLRNM-TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNV 176 (318)
T ss_dssp EEEEEE-ECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eeEEEe-cCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeE
Confidence 999888 688888877655 5679999999999999998876 456778899999999999999999999999999999
Q ss_pred EECCCCceeee-eeccCCCccceeEEEEcCCCCCEEE--EEeCCCeEEEEEcC-CcEEEEecCCcccCcCEEEEEEcCCC
Q psy8448 262 WNLKTTECTST-FKSLGASDIAVNSIHLLPKNTEHFV--VCNKTNTVVIMNMQ-GQIVRSLSSGKREGGDFLCCTTSPRG 337 (482)
Q Consensus 262 ~d~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~l~--~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~v~~~~~~~~g 337 (482)
||+++++.... ......+...|.++.++|.+...+. +++.++.|++||.. ........ + ...+..+.|+|++
T Consensus 177 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~---~~~v~~~~~~~~~ 252 (318)
T 4ggc_A 177 WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-A---HSQVCSILWSPHY 252 (318)
T ss_dssp EESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-C---SSCEEEEEEETTT
T ss_pred EECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-c---eeeeeeeeecccc
Confidence 99998754322 1222267788999999999877664 45678999999995 44433333 2 5678999999999
Q ss_pred CEEEEEe--CCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhhh
Q psy8448 338 EWIYCVG--EDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLID 415 (482)
Q Consensus 338 ~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 415 (482)
..+++++ .|+.|+ +|+..++ ++
T Consensus 253 ~~~~~~sg~~d~~i~------------------iwd~~~~-------------------------------~~------- 276 (318)
T 4ggc_A 253 KELISGHGFAQNQLV------------------IWKYPTM-------------------------------AK------- 276 (318)
T ss_dssp TEEEEEECTTTCCEE------------------EEETTTC-------------------------------CE-------
T ss_pred cceEEEEEcCCCEEE------------------EEECCCC-------------------------------cE-------
Confidence 9988765 799999 6666666 22
Q ss_pred hhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448 416 LYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS 482 (482)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW 482 (482)
.. .+.+|.+.|++++|+|||++|||||.||+|+||
T Consensus 277 ----------------------~~----------~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iW 311 (318)
T 4ggc_A 277 ----------------------VA----------ELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311 (318)
T ss_dssp ----------------------EE----------EECCCSSCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred ----------------------EE----------EEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 33 677999999999999999999999999999999
No 59
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=6.8e-37 Score=278.95 Aligned_cols=270 Identities=25% Similarity=0.417 Sum_probs=226.3
Q ss_pred CCCceeec--cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccc
Q psy8448 65 PPGTTIDL--FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQA 142 (482)
Q Consensus 65 ~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 142 (482)
|+|..++. .++.+.+|+...... .....+|...|.+++|+|++++|++|+.||.|++||+++++....+.
T Consensus 33 ~~~~~l~s~~~dg~i~iw~~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--- 104 (312)
T 4ery_A 33 PNGEWLASSSADKLIKIWGAYDGKF-----EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK--- 104 (312)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCE-----EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---
T ss_pred CCCCEEEEeeCCCeEEEEeCCCccc-----chhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEc---
Confidence 44444433 366788887654332 23345899999999999999999999999999999999887665443
Q ss_pred ccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeC
Q psy8448 143 QDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGL 222 (482)
Q Consensus 143 ~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~ 222 (482)
+|...|.+++|+|++++|++++.|+.|++||+++++.+..+ ..|..+|.+++|+|++++|++++.||.|++||+
T Consensus 105 -----~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~ 178 (312)
T 4ery_A 105 -----GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178 (312)
T ss_dssp -----CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred -----CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence 35789999999999999999999999999999999988888 688999999999999999999999999999999
Q ss_pred CCCceEEEee-ccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccce--eEEEEcCCCCCEEEEE
Q psy8448 223 KSGKMLKEFR-GHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAV--NSIHLLPKNTEHFVVC 299 (482)
Q Consensus 223 ~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v--~~i~~~~~~~~~l~~~ 299 (482)
++++.+..+. .+...+.+++|+|++++|++++.|+.|++||+++++....+. .|.... ....+++.+..+++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~sg 255 (312)
T 4ery_A 179 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT---GHKNEKYCIFANFSVTGGKWIVSG 255 (312)
T ss_dssp TTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC---SSCCSSSCCCEEEECSSSCEEEEC
T ss_pred CCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEE---ecCCceEEEEEEEEeCCCcEEEEE
Confidence 9998877764 456789999999999999999999999999999998888776 443332 2234454444899999
Q ss_pred eCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEe--CCcEEEEEee
Q psy8448 300 NKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVG--EDMVLVVRLI 354 (482)
Q Consensus 300 ~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~--~dg~i~iw~~ 354 (482)
+.|+.|++||+ .++.+..+..+ ...|.+++|+|++++|++++ .|+.|++|+.
T Consensus 256 ~~dg~i~vwd~~~~~~~~~~~~h---~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 256 SEDNLVYIWNLQTKEIVQKLQGH---TDVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp CTTSCEEEEETTTCCEEEEECCC---SSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred CCCCEEEEEECCCchhhhhhhcc---CCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 99999999999 57777777765 77899999999999999987 6999997764
No 60
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.9e-37 Score=293.61 Aligned_cols=298 Identities=17% Similarity=0.207 Sum_probs=238.8
Q ss_pred eeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCceeeccccccc-----cccccccccEEEEEEcC-CCCEEE
Q psy8448 94 QIKFGSKSHVECARFSP-DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQ-----DNFMLMEEAVMSLAYSR-DSEMLA 166 (482)
Q Consensus 94 ~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-----~~~~~h~~~i~~l~~~~-~~~~l~ 166 (482)
.+..+|.+.|++++|+| ++++|++|+.||.|++||+.+++....+..... ....+|...|.+++|+| ++++|+
T Consensus 37 ~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 116 (408)
T 4a11_B 37 DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFT 116 (408)
T ss_dssp EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEE
T ss_pred eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEE
Confidence 44558999999999999 999999999999999999998876555432211 12235789999999999 788999
Q ss_pred EEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccC---CCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEE
Q psy8448 167 SGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRD---NSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITF 243 (482)
Q Consensus 167 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~ 243 (482)
+++.||.|++||+.+++....+. +...+.++.|+|. +.++++++.|+.|++||+++++.+..+..|...|.+++|
T Consensus 117 s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~ 194 (408)
T 4a11_B 117 SSSFDKTLKVWDTNTLQTADVFN--FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSW 194 (408)
T ss_dssp EEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEE
T ss_pred EEeCCCeEEEeeCCCCccceecc--CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEE
Confidence 99999999999999999888874 7788999999984 459999999999999999999999999999999999999
Q ss_pred cCCCC-EEEEEeCCCcEEEEECCCCc-eeeeee------------ccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEE
Q psy8448 244 TADGH-SVLSASSDGTVKMWNLKTTE-CTSTFK------------SLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMN 309 (482)
Q Consensus 244 ~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~~------------~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d 309 (482)
+|+++ .|++++.||.|++||++++. +...+. ....|...|.+++|+|++ .++++++.|+.|++||
T Consensus 195 ~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd 273 (408)
T 4a11_B 195 SPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG-LHLLTVGTDNRMRLWN 273 (408)
T ss_dssp CSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTS-SEEEEEETTSCEEEEE
T ss_pred CCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCC-CEEEEecCCCeEEEEE
Confidence 99998 58899999999999998765 222221 112678899999999998 8999999999999999
Q ss_pred cC-CcEEEEecCCc--ccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeeccccccc
Q psy8448 310 MQ-GQIVRSLSSGK--REGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDG 386 (482)
Q Consensus 310 ~~-~~~~~~~~~~~--~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (482)
+. ++......... .....+........+..+++++.|+.|+ +|+..++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------------------v~d~~~~----------- 324 (408)
T 4a11_B 274 SSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIA------------------VYTVYSG----------- 324 (408)
T ss_dssp TTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEE------------------EEETTTC-----------
T ss_pred CCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEE------------------EEECcCC-----------
Confidence 94 44333222111 0112222233334456677788899999 5666555
Q ss_pred ceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCC
Q psy8448 387 FIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPH 466 (482)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~ 466 (482)
.. .. .+.+|...|++++|+|+
T Consensus 325 --------------------~~-----------------------------~~----------~~~~~~~~v~~~~~s~~ 345 (408)
T 4a11_B 325 --------------------EQ-----------------------------IT----------MLKGHYKTVDCCVFQSN 345 (408)
T ss_dssp --------------------CE-----------------------------EE----------EECCCSSCEEEEEEETT
T ss_pred --------------------cc-----------------------------ee----------eeccCCCeEEEEEEcCC
Confidence 22 22 66789999999999999
Q ss_pred cceEEEEecCceeecC
Q psy8448 467 QNLLGTYSEDGLLRFS 482 (482)
Q Consensus 467 ~~~l~s~~~Dg~i~iW 482 (482)
+++|++|+.||.|++|
T Consensus 346 ~~~l~s~~~dg~i~iw 361 (408)
T 4a11_B 346 FQELYSGSRDCNILAW 361 (408)
T ss_dssp TTEEEEEETTSCEEEE
T ss_pred CCEEEEECCCCeEEEE
Confidence 9999999999999998
No 61
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-38 Score=327.53 Aligned_cols=212 Identities=13% Similarity=0.203 Sum_probs=167.4
Q ss_pred CCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccE
Q psy8448 74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAV 153 (482)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i 153 (482)
++.+.+|+...... .....|...|.+++|+| +++|++++.|++|++||+.+++.+..+. |...|
T Consensus 38 Dg~I~lw~~~~~~~------~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~---------~~~~V 101 (902)
T 2oaj_A 38 TGEVHIYGQQQVEV------VIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF---------VPGKI 101 (902)
T ss_dssp TSEEEEECSTTCEE------EEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE---------CSSCE
T ss_pred CCEEEEEeCCCcEE------EEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc---------CCCCE
Confidence 56777887543211 12236888999999999 8899999999999999999988766553 35689
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEE----------eecccCCCeEEEEEccC-CCEEEEEECCCeEEEEeC
Q psy8448 154 MSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRK----------LEKAHSLGVTCIQFSRD-NSQILTASFDTYVRIHGL 222 (482)
Q Consensus 154 ~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----------~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~i~d~ 222 (482)
++++|+|++++|++|+.||.|++||+++++.... ...+|...|.+++|+|+ +..+++|+.||.| +||+
T Consensus 102 ~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~ 180 (902)
T 2oaj_A 102 TSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSL 180 (902)
T ss_dssp EEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEET
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEEC
Confidence 9999999999999999999999999998875311 11468889999999996 4789999999999 9999
Q ss_pred CCCceEEEeecc------------------ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeee--eeccCC----
Q psy8448 223 KSGKMLKEFRGH------------------SSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTST--FKSLGA---- 278 (482)
Q Consensus 223 ~~~~~~~~~~~~------------------~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~---- 278 (482)
++++++..+..| ...|.+++|+|++++|++++.||.|++||+++++++.. +.....
T Consensus 181 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~ 260 (902)
T 2oaj_A 181 VENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQ 260 (902)
T ss_dssp TTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCC
T ss_pred CCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCC
Confidence 999988888765 46799999999999999999999999999999887653 211111
Q ss_pred ---------CccceeEEEEcC----CCCCEEEEEeCC
Q psy8448 279 ---------SDIAVNSIHLLP----KNTEHFVVCNKT 302 (482)
Q Consensus 279 ---------~~~~v~~i~~~~----~~~~~l~~~~~d 302 (482)
+..+|.+++|++ ++..++++++.+
T Consensus 261 ~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~ 297 (902)
T 2oaj_A 261 PDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI 297 (902)
T ss_dssp TTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECS
T ss_pred CcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCC
Confidence 244788888854 332455555443
No 62
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=5.5e-38 Score=289.38 Aligned_cols=278 Identities=15% Similarity=0.201 Sum_probs=233.5
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy8448 99 SKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWK 178 (482)
Q Consensus 99 h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd 178 (482)
|.++|.+++|+|||++++++..++.+.+|......... ...+|...|++++|+|++++|++++ ||.|++||
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~ 78 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQI--------NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWD 78 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEE--------EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEE
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccc--------eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEE
Confidence 56789999999999999988877777666544322111 1224788999999999999999998 99999999
Q ss_pred cCCCeEeEEee----cccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCc--eEEEeeccccceeEEEEcCCCCEEEE
Q psy8448 179 IATGQCLRKLE----KAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGK--MLKEFRGHSSFVNDITFTADGHSVLS 252 (482)
Q Consensus 179 ~~~~~~~~~~~----~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~l~~~~~~~~l~~ 252 (482)
+.+++....+. ..|...|.+++|+|++++|++++.|+.|++||+++++ ....+..|...|.+++|+|++++|++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 158 (337)
T 1gxr_A 79 ISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFS 158 (337)
T ss_dssp TTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEE
T ss_pred CCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEE
Confidence 98765332221 2688899999999999999999999999999999887 56677889999999999999999999
Q ss_pred EeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CcEEEEecCCcccCcCEEEE
Q psy8448 253 ASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSGKREGGDFLCC 331 (482)
Q Consensus 253 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~v~~~ 331 (482)
++.||.|++||+++++....+. .|...+.+++|+|++ ..+++++.|+.|++||++ ++.+..+. +...+.++
T Consensus 159 ~~~dg~v~~~d~~~~~~~~~~~---~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~----~~~~v~~~ 230 (337)
T 1gxr_A 159 CCSDGNIAVWDLHNQTLVRQFQ---GHTDGASCIDISNDG-TKLWTGGLDNTVRSWDLREGRQLQQHD----FTSQIFSL 230 (337)
T ss_dssp EETTSCEEEEETTTTEEEEEEC---CCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEE
T ss_pred EeCCCcEEEEeCCCCceeeeee---cccCceEEEEECCCC-CEEEEEecCCcEEEEECCCCceEeeec----CCCceEEE
Confidence 9999999999999998888876 788899999999998 899999999999999994 56555553 26789999
Q ss_pred EEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCch
Q psy8448 332 TTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEK 411 (482)
Q Consensus 332 ~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 411 (482)
+|+|++++|++++.|+.+++| +..++ ..
T Consensus 231 ~~s~~~~~l~~~~~~~~i~~~------------------~~~~~-------------------------------~~--- 258 (337)
T 1gxr_A 231 GYCPTGEWLAVGMESSNVEVL------------------HVNKP-------------------------------DK--- 258 (337)
T ss_dssp EECTTSSEEEEEETTSCEEEE------------------ETTSS-------------------------------CE---
T ss_pred EECCCCCEEEEEcCCCcEEEE------------------ECCCC-------------------------------Ce---
Confidence 999999999999999999954 44443 11
Q ss_pred hhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448 412 KLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS 482 (482)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW 482 (482)
. .+..|...|.+++|+|++++|++++.||.|++|
T Consensus 259 ---------------------------~----------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 292 (337)
T 1gxr_A 259 ---------------------------Y----------QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW 292 (337)
T ss_dssp ---------------------------E----------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ---------------------------E----------EEcCCccceeEEEECCCCCEEEEecCCCcEEEE
Confidence 1 445788899999999999999999999999998
No 63
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.3e-37 Score=298.57 Aligned_cols=252 Identities=13% Similarity=0.249 Sum_probs=200.0
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceee---cccccccccccccc------------ccEEEEEEcCCC
Q psy8448 98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRK---DLKYQAQDNFMLME------------EAVMSLAYSRDS 162 (482)
Q Consensus 98 ~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~---~~~~~~~~~~~~h~------------~~i~~l~~~~~~ 162 (482)
.|.+.|++++|+|+|++||+|+.||.|+|||+.+++... .........+.+|. ..|++++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 568899999999999999999999999999998776211 01111223344566 889999999998
Q ss_pred --CEEEEEeCCCcEEEEEcCCCeEe---------------------------------------EEeecccCCCeEEEEE
Q psy8448 163 --EMLASGSQSGKVKIWKIATGQCL---------------------------------------RKLEKAHSLGVTCIQF 201 (482)
Q Consensus 163 --~~l~~~~~dg~i~iwd~~~~~~~---------------------------------------~~~~~~~~~~v~~i~~ 201 (482)
.+|++++.|+.|++||+.++... ..+..+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999998764432 1333579999999999
Q ss_pred ccCCCEEEEEECCCeEEEEeCCC-CceEE-------EeeccccceeEEEEcCCC-CEEEEEeCCCcEEEEECCCCce---
Q psy8448 202 SRDNSQILTASFDTYVRIHGLKS-GKMLK-------EFRGHSSFVNDITFTADG-HSVLSASSDGTVKMWNLKTTEC--- 269 (482)
Q Consensus 202 ~~~~~~l~~~~~dg~i~i~d~~~-~~~~~-------~~~~~~~~i~~l~~~~~~-~~l~~~~~dg~i~i~d~~~~~~--- 269 (482)
+|++++|++| .|+.|++||+++ ++.+. .+.+|...|.+++|+|++ ++|++++.||.|++||+++++.
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 9999999998 799999999984 44444 256799999999999998 9999999999999999999876
Q ss_pred -eeeeeccCCCcc------------ceeEEEEcCCCCCEEEEEeCCCeEEEEEcC--CcEEEEecCCcccCc--------
Q psy8448 270 -TSTFKSLGASDI------------AVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ--GQIVRSLSSGKREGG-------- 326 (482)
Q Consensus 270 -~~~~~~~~~~~~------------~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~~-------- 326 (482)
...+. .+.. .|.+++|+|++ .++++++. +.|++||++ ++.+..+..+.....
T Consensus 265 ~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~ 339 (447)
T 3dw8_B 265 HSKLFE---EPEDPSNRSFFSEIISSISDVKFSHSG-RYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEN 339 (447)
T ss_dssp TCEEEC---CC-----CCHHHHHTTCEEEEEECTTS-SEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHT
T ss_pred eeeEec---cCCCccccccccccCceEEEEEECCCC-CEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccc
Confidence 45554 5554 89999999998 88999988 999999994 666666665432111
Q ss_pred ----CEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448 327 ----DFLCCTTSPRGEWIYCVGEDMVLVVRLIQ 355 (482)
Q Consensus 327 ----~v~~~~~~~~g~~l~~~~~dg~i~iw~~~ 355 (482)
.+..++|+|++++|++|+.||.|++|++.
T Consensus 340 ~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~ 372 (447)
T 3dw8_B 340 DCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRN 372 (447)
T ss_dssp SGGGCCCCEEECTTSSEEEEECSTTEEEEEETT
T ss_pred cccccceEEEECCCCCEEEEeccCCEEEEEEcC
Confidence 13459999999999999999999966654
No 64
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.8e-37 Score=320.18 Aligned_cols=246 Identities=20% Similarity=0.313 Sum_probs=220.0
Q ss_pred eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCc
Q psy8448 94 QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGK 173 (482)
Q Consensus 94 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~ 173 (482)
+.+.+|.+.|++++|+|++++||+|+.||.|+|||+.+++....+. +|..+|++++|+|++++|++++.||.
T Consensus 7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~l~~~~~dg~ 78 (814)
T 3mkq_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQ--------VTETPVRAGKFIARKNWIIVGSDDFR 78 (814)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE--------CCSSCEEEEEEEGGGTEEEEEETTSE
T ss_pred eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEe--------cCCCcEEEEEEeCCCCEEEEEeCCCe
Confidence 3445899999999999999999999999999999999987766554 35789999999999999999999999
Q ss_pred EEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCC-ceEEEeeccccceeEEEEcC-CCCEEE
Q psy8448 174 VKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSG-KMLKEFRGHSSFVNDITFTA-DGHSVL 251 (482)
Q Consensus 174 i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~l~~~~-~~~~l~ 251 (482)
|++||+.+++.+..+ ..|...|.+++|+|++++|++++.||.|++||++++ .....+.+|...|.+++|+| +++.|+
T Consensus 79 i~vw~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 157 (814)
T 3mkq_A 79 IRVFNYNTGEKVVDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA 157 (814)
T ss_dssp EEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEE
T ss_pred EEEEECCCCcEEEEE-ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEE
Confidence 999999999998888 689999999999999999999999999999999987 66778889999999999999 889999
Q ss_pred EEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcC--CCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCE
Q psy8448 252 SASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLP--KNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDF 328 (482)
Q Consensus 252 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v 328 (482)
+++.||.|++||+++++....+.. .+...+..++|+| ++ .++++++.|+.|++||+ .++.+..+..+ ...|
T Consensus 158 ~~~~dg~v~vwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~---~~~v 231 (814)
T 3mkq_A 158 SGCLDRTVKVWSLGQSTPNFTLTT--GQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQTKSCVATLEGH---MSNV 231 (814)
T ss_dssp EEETTSEEEEEETTCSSCSEEEEC--CCTTCCCEEEECCSTTC-CEEEEECTTSEEEEEETTTTEEEEEEECC---SSCE
T ss_pred EEeCCCeEEEEECCCCcceeEEec--CCCCCEEEEEEEECCCC-CEEEEEeCCCEEEEEECCCCcEEEEEcCC---CCCE
Confidence 999999999999998877666652 4448899999999 77 79999999999999999 57777777654 6789
Q ss_pred EEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448 329 LCCTTSPRGEWIYCVGEDMVLVVRLI 354 (482)
Q Consensus 329 ~~~~~~~~g~~l~~~~~dg~i~iw~~ 354 (482)
.+++|+|++++|++++.||.|++|++
T Consensus 232 ~~~~~~~~~~~l~~~~~dg~v~vwd~ 257 (814)
T 3mkq_A 232 SFAVFHPTLPIIISGSEDGTLKIWNS 257 (814)
T ss_dssp EEEEECSSSSEEEEEETTSCEEEEET
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 99999999999999999999995443
No 65
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.1e-36 Score=281.05 Aligned_cols=273 Identities=18% Similarity=0.278 Sum_probs=215.6
Q ss_pred CCceeec--cCCccccccccccccc--cccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccc
Q psy8448 66 PGTTIDL--FRGKAAMKDQEEEKYP--TQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQ 141 (482)
Q Consensus 66 ~g~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 141 (482)
++..+.. .++.+.+|+....... .......+.+|...|++++|+|++.+|++|+.|++|++||+++++....+
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~--- 114 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRF--- 114 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEE---
T ss_pred CCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEE---
Confidence 4444443 3567889987644322 11223455699999999999999999999999999999999988765544
Q ss_pred cccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEee--cccCCCeEEEEEccCC----------CEEE
Q psy8448 142 AQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLE--KAHSLGVTCIQFSRDN----------SQIL 209 (482)
Q Consensus 142 ~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~i~~~~~~----------~~l~ 209 (482)
.+|...|.+++|+|++++|++++.|+.|++||+... ...... ..|...|.+++|+|++ .+|+
T Consensus 115 -----~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~ 188 (343)
T 2xzm_R 115 -----VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFA 188 (343)
T ss_dssp -----ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEE
T ss_pred -----cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEE
Confidence 346889999999999999999999999999999743 333321 2688899999999986 7899
Q ss_pred EEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeeeeeccCCCccceeEEEE
Q psy8448 210 TASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTT-ECTSTFKSLGASDIAVNSIHL 288 (482)
Q Consensus 210 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~i~~ 288 (482)
+++.|+.|++|| ...+....+.+|...|.+++|+|++++|++++.||.|++||+.+. .....+ .+...|.+++|
T Consensus 189 s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~----~~~~~v~~v~~ 263 (343)
T 2xzm_R 189 SVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF----DAGSTINQIAF 263 (343)
T ss_dssp EEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE----ECSSCEEEEEE
T ss_pred EEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee----cCCCcEEEEEE
Confidence 999999999999 456777888999999999999999999999999999999999543 333333 34557999999
Q ss_pred cCCCCCEEEEEeCCCeEEEEEcC-CcEE--EEecCC--------cccCcCEEEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448 289 LPKNTEHFVVCNKTNTVVIMNMQ-GQIV--RSLSSG--------KREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLI 354 (482)
Q Consensus 289 ~~~~~~~l~~~~~d~~i~i~d~~-~~~~--~~~~~~--------~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~ 354 (482)
+|++ .+++ ++.|+.|++|++. ++.. ..+... ..+...+.+++|+|+|++|++|+.||.|++|++
T Consensus 264 sp~~-~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~ 338 (343)
T 2xzm_R 264 NPKL-QWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSF 338 (343)
T ss_dssp CSSS-CEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEE
T ss_pred CCCC-CEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEE
Confidence 9997 5555 5568889999993 3322 233311 134678999999999999999999999996654
No 66
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.7e-38 Score=288.26 Aligned_cols=254 Identities=17% Similarity=0.172 Sum_probs=201.6
Q ss_pred ceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC--CCCEEEEEe
Q psy8448 92 SKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR--DSEMLASGS 169 (482)
Q Consensus 92 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~--~~~~l~~~~ 169 (482)
.+.++.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++... ...+.+|...|.+++|+| ++++|++|+
T Consensus 5 ~~~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~------~~~l~gH~~~V~~v~~~~~~~~~~l~s~s 78 (316)
T 3bg1_A 5 INTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQIL------IADLRGHEGPVWQVAWAHPMYGNILASCS 78 (316)
T ss_dssp ---------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEE------EEEEECCSSCEEEEEECCGGGSSCEEEEE
T ss_pred eeeecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEE------EEEEcCCCccEEEEEeCCCCCCCEEEEEE
Confidence 344566999999999999999999999999999999998764321 123456889999999986 489999999
Q ss_pred CCCcEEEEEcCCCe--EeEEeecccCCCeEEEEEccC--CCEEEEEECCCeEEEEeCCCCce---EEEeeccccceeEEE
Q psy8448 170 QSGKVKIWKIATGQ--CLRKLEKAHSLGVTCIQFSRD--NSQILTASFDTYVRIHGLKSGKM---LKEFRGHSSFVNDIT 242 (482)
Q Consensus 170 ~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~i~~l~ 242 (482)
.|++|++||+++++ ....+ .+|...|.+++|+|+ +.+|++|+.|+.|++||++.+.. ...+.+|...|.+++
T Consensus 79 ~D~~v~iWd~~~~~~~~~~~~-~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~ 157 (316)
T 3bg1_A 79 YDRKVIIWREENGTWEKSHEH-AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVS 157 (316)
T ss_dssp TTSCEEEECCSSSCCCEEEEE-CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCE
T ss_pred CCCEEEEEECCCCcceEEEEc-cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEE
Confidence 99999999998874 44555 679999999999997 78999999999999999987632 345568999999999
Q ss_pred EcCC-----------------CCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCC---CCEEEEEeCC
Q psy8448 243 FTAD-----------------GHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKN---TEHFVVCNKT 302 (482)
Q Consensus 243 ~~~~-----------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~---~~~l~~~~~d 302 (482)
|+|+ +++|++++.|+.|++||++..........+.+|...|.+++|+|++ ..+|++++.|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D 237 (316)
T 3bg1_A 158 WAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQD 237 (316)
T ss_dssp ECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETT
T ss_pred EccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCC
Confidence 9997 4689999999999999997653222222333899999999999985 3689999999
Q ss_pred CeEEEEEcCC----c-EEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448 303 NTVVIMNMQG----Q-IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ 355 (482)
Q Consensus 303 ~~i~i~d~~~----~-~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~ 355 (482)
++|++|++.. . ....+.. +...|.+++|+|+|++|++++.|+.|++|+..
T Consensus 238 ~~v~iw~~~~~~~~~~~~~~~~~---~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 238 GRVFIWTCDDASSNTWSPKLLHK---FNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CEEEEEECSSTTCCCCBCCEEEE---CSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CeEEEEEccCccccchhhhhhhc---CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 9999999843 1 1112222 36789999999999999999999999977653
No 67
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.3e-37 Score=287.67 Aligned_cols=245 Identities=14% Similarity=0.237 Sum_probs=204.2
Q ss_pred eecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCC-EEEEEeCCCc
Q psy8448 95 IKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSE-MLASGSQSGK 173 (482)
Q Consensus 95 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~~~~~dg~ 173 (482)
+..+|.+.|++++|+|++++|++++.||.|++|++.+++..... ....+|...|++++|+|+++ +|++++.||.
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 80 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL-----LQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE 80 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEE-----EEEEECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccc-----eeeeecCCceEEEEECCCCCcEEEEEcCCCe
Confidence 34589999999999999999999999999999999877621111 12224688999999999999 9999999999
Q ss_pred EEEEEc-CCCeEeEEeecc--cCCCeEEEEEccCCCEEEEEECCCeEEEEeCCC---------CceEEEeeccccceeEE
Q psy8448 174 VKIWKI-ATGQCLRKLEKA--HSLGVTCIQFSRDNSQILTASFDTYVRIHGLKS---------GKMLKEFRGHSSFVNDI 241 (482)
Q Consensus 174 i~iwd~-~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~i~~l 241 (482)
|++||+ .+++. ..+ .. |...|.+++|+| +.+|++++.|+.|++||+++ ++++..+. |...|.++
T Consensus 81 i~~wd~~~~~~~-~~~-~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~ 156 (342)
T 1yfq_A 81 ILKVDLIGSPSF-QAL-TNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTM 156 (342)
T ss_dssp EEEECSSSSSSE-EEC-BSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEE
T ss_pred EEEEEeccCCce-Eec-cccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEE
Confidence 999999 77765 444 56 999999999999 99999999999999999987 77676666 88999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCC-CceeeeeeccCCCccceeEEEEcC-CCCCEEEEEeCCCeEEEEEcC-C------
Q psy8448 242 TFTADGHSVLSASSDGTVKMWNLKT-TECTSTFKSLGASDIAVNSIHLLP-KNTEHFVVCNKTNTVVIMNMQ-G------ 312 (482)
Q Consensus 242 ~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~v~~i~~~~-~~~~~l~~~~~d~~i~i~d~~-~------ 312 (482)
+|+|++ +++++.|+.|++||+++ +....... ...+...+.+++|+| ++ .++++++.||.|++|+++ .
T Consensus 157 ~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~i~~i~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~ 232 (342)
T 1yfq_A 157 DTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIE-ESGLKYQIRDVALLPKEQ-EGYACSSIDGRVAVEFFDDQGDDYNS 232 (342)
T ss_dssp EECSSE--EEEEESTTEEEEEESSCCTTCCCEEE-ECSCSSCEEEEEECSGGG-CEEEEEETTSEEEEEECCTTCCSTTC
T ss_pred EecCCc--EEEEeCCCeEEEEECCccccccceee-ecCCCCceeEEEECCCCC-CEEEEEecCCcEEEEEEcCCCccccc
Confidence 999887 99999999999999998 55322111 116778999999999 88 899999999999999993 3
Q ss_pred cEEEEecCCcc------cCcCEEEEEEcCCCCEEEEEeCCcEEEEE
Q psy8448 313 QIVRSLSSGKR------EGGDFLCCTTSPRGEWIYCVGEDMVLVVR 352 (482)
Q Consensus 313 ~~~~~~~~~~~------~~~~v~~~~~~~~g~~l~~~~~dg~i~iw 352 (482)
+....+..+.. +...|.+++|+|++++|++++.||.|++|
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw 278 (342)
T 1yfq_A 233 SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW 278 (342)
T ss_dssp TTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred ccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEE
Confidence 55556655421 24489999999999999999999999944
No 68
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=7.9e-37 Score=276.07 Aligned_cols=247 Identities=19% Similarity=0.214 Sum_probs=202.4
Q ss_pred cccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCC--eEeEEeecccCCCeEEEEEcc--CCCEEEEEECCCeEEEEe
Q psy8448 146 FMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATG--QCLRKLEKAHSLGVTCIQFSR--DNSQILTASFDTYVRIHG 221 (482)
Q Consensus 146 ~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~dg~i~i~d 221 (482)
+.+|.+.|++++|+|++++|++|+.|++|++||+... +.+..+ .+|..+|.+++|++ ++++|++|+.|+.|++||
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l-~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd 83 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEE-ccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence 4568899999999999999999999999999999743 556677 68999999999986 488999999999999999
Q ss_pred CCCCc--eEEEeeccccceeEEEEcCC--CCEEEEEeCCCcEEEEECCCCce--eeeeeccCCCccceeEEEEcCCC---
Q psy8448 222 LKSGK--MLKEFRGHSSFVNDITFTAD--GHSVLSASSDGTVKMWNLKTTEC--TSTFKSLGASDIAVNSIHLLPKN--- 292 (482)
Q Consensus 222 ~~~~~--~~~~~~~~~~~i~~l~~~~~--~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~v~~i~~~~~~--- 292 (482)
+++++ .+..+.+|...|.+++|+|+ +.+|++++.|+.|++||++++.. ...+. .|...|.+++|+|++
T Consensus 84 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~---~h~~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIID---AHAIGVNSASWAPATIEE 160 (297)
T ss_dssp BSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEE---CCSSCEEEEEECCCC---
T ss_pred cCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeee---cccCccceEeecCCcccc
Confidence 98874 56677889999999999997 88999999999999999987642 23333 788899999999973
Q ss_pred ---------CCEEEEEeCCCeEEEEEc-CCc----EEEEecCCcccCcCEEEEEEcCCC---CEEEEEeCCcEEEEEeeh
Q psy8448 293 ---------TEHFVVCNKTNTVVIMNM-QGQ----IVRSLSSGKREGGDFLCCTTSPRG---EWIYCVGEDMVLVVRLIQ 355 (482)
Q Consensus 293 ---------~~~l~~~~~d~~i~i~d~-~~~----~~~~~~~~~~~~~~v~~~~~~~~g---~~l~~~~~dg~i~iw~~~ 355 (482)
..+|++++.|+.|++||+ .+. ....+..| ...|.+++|+|++ .+|++++.|+.|++|+++
T Consensus 161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H---~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~ 237 (297)
T 2pm7_B 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH---SDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD 237 (297)
T ss_dssp ---------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC---SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred cccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC---CCceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence 368999999999999999 343 34455443 7899999999995 899999999999966543
Q ss_pred hhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhh
Q psy8448 356 QYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARS 435 (482)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (482)
++... . . ..
T Consensus 238 ------------------~~~~~---------~--------~---------~~--------------------------- 246 (297)
T 2pm7_B 238 ------------------NEQGP---------W--------K---------KT--------------------------- 246 (297)
T ss_dssp ------------------STTSC---------C--------E---------EE---------------------------
T ss_pred ------------------CCCCc---------c--------c---------ee---------------------------
Confidence 22000 0 0 00
Q ss_pred hccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448 436 LLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS 482 (482)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW 482 (482)
.. ....|...|.+++|+|+|++||+++.||+|+||
T Consensus 247 --~~----------~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw 281 (297)
T 2pm7_B 247 --LL----------KEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281 (297)
T ss_dssp --ES----------SSSCCSSCEEEEEECSSSCCEEEEETTSCEEEE
T ss_pred --ee----------ecccCCCcEEEEEECCCCCEEEEEcCCCcEEEE
Confidence 00 123677889999999999999999999999998
No 69
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.7e-37 Score=286.02 Aligned_cols=297 Identities=13% Similarity=0.119 Sum_probs=214.0
Q ss_pred eeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC--CCCEEEEEeC
Q psy8448 93 KQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR--DSEMLASGSQ 170 (482)
Q Consensus 93 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~--~~~~l~~~~~ 170 (482)
+.++.+|++.|++++|+|++++|++|+.||.|++||+.++..... ....+.+|...|++++|+| ++++|++++.
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~ 79 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWE----LSDSWRAHDSSIVAIDWASPEYGRIIASASY 79 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEE----EEEEEECCSSCEEEEEECCGGGCSEEEEEET
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcce----ecceeccCCCcEEEEEEcCCCCCCEEEEEcC
Confidence 456679999999999999999999999999999999987643211 1223445789999999999 6999999999
Q ss_pred CCcEEEEEcCCC---------eEeEEeecccCCCeEEEEEccC--CCEEEEEECCCeEEEEeCCCCceEEEee-------
Q psy8448 171 SGKVKIWKIATG---------QCLRKLEKAHSLGVTCIQFSRD--NSQILTASFDTYVRIHGLKSGKMLKEFR------- 232 (482)
Q Consensus 171 dg~i~iwd~~~~---------~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~------- 232 (482)
||.|++||+.++ +....+ ..|...|.+++|+|+ +.+|++++.||.|++||+++++.+..+.
T Consensus 80 dg~v~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 158 (351)
T 3f3f_A 80 DKTVKLWEEDPDQEECSGRRWNKLCTL-NDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKV 158 (351)
T ss_dssp TSCEEEEEECTTSCTTSSCSEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEES
T ss_pred CCeEEEEecCCCcccccccCcceeeee-cccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccc
Confidence 999999999877 445666 679999999999999 9999999999999999999887554332
Q ss_pred ------ccccceeEEEEcCC---CCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCC---CEEEEEe
Q psy8448 233 ------GHSSFVNDITFTAD---GHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNT---EHFVVCN 300 (482)
Q Consensus 233 ------~~~~~i~~l~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~---~~l~~~~ 300 (482)
.|...+.+++|+|+ +..+++++.++.+.+|+...++.. .......|...|.+++|+|++. .++++++
T Consensus 159 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~ 237 (351)
T 3f3f_A 159 LSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLH-VAAKLPGHKSLIRSISWAPSIGRWYQLIATGC 237 (351)
T ss_dssp CSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEE-EEEECCCCCSCEEEEEECCCSSCSSEEEEEEE
T ss_pred cccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCcee-eeeecCCCCcceeEEEECCCCCCcceEEEEEc
Confidence 57788999999997 899999999999988887776542 2222337899999999999974 6899999
Q ss_pred CCCeEEEEEcC-CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceee
Q psy8448 301 KTNTVVIMNMQ-GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLN 379 (482)
Q Consensus 301 ~d~~i~i~d~~-~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (482)
.|+.|++||++ +......... .........++....+..+..++....+ ..+|+....
T Consensus 238 ~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~---- 296 (351)
T 3f3f_A 238 KDGRIRIFKITEKLSPLASEES---LTNSNMFDNSADVDMDAQGRSDSNTEEK--------------AELQSNLQV---- 296 (351)
T ss_dssp TTSCEEEEEEEECC--------------------------------------------------------CCSEEE----
T ss_pred CCCeEEEEeCCCCcCccccCCc---ccceeccCCCccccccccccccccccee--------------eeecccccc----
Confidence 99999999994 3322222211 2223334444444444444333322200 002222222
Q ss_pred cccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceeccccee
Q psy8448 380 TVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVI 459 (482)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 459 (482)
.++..+.+|...|+
T Consensus 297 ------------------------------------------------------------------~~~~~~~~h~~~v~ 310 (351)
T 3f3f_A 297 ------------------------------------------------------------------ELLSEHDDHNGEVW 310 (351)
T ss_dssp ------------------------------------------------------------------EEEEEECTTSSCEE
T ss_pred ------------------------------------------------------------------cEEEEEecccccEE
Confidence 22226778999999
Q ss_pred eccccCCcceEEEEecCceeecC
Q psy8448 460 GLTHHPHQNLLGTYSEDGLLRFS 482 (482)
Q Consensus 460 ~~~~sp~~~~l~s~~~Dg~i~iW 482 (482)
+++|+|++++|+||+.||.|+||
T Consensus 311 ~~~~s~~~~~l~s~~~dg~v~iw 333 (351)
T 3f3f_A 311 SVSWNLTGTILSSAGDDGKVRLW 333 (351)
T ss_dssp EEEECSSSCCEEEEETTSCEEEE
T ss_pred EEEEcCCCCEEEEecCCCcEEEE
Confidence 99999999999999999999998
No 70
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4e-36 Score=287.93 Aligned_cols=297 Identities=22% Similarity=0.385 Sum_probs=250.9
Q ss_pred cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccccccccccccc
Q psy8448 73 FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEA 152 (482)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~ 152 (482)
.++.+.+|+...... .....+|...|.+++|+ +++|++|+.||+|++||+.+++....+. +|...
T Consensus 137 ~dg~i~vwd~~~~~~-----~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~--------~h~~~ 201 (445)
T 2ovr_B 137 DDNTLKVWSAVTGKC-----LRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLY--------GHTST 201 (445)
T ss_dssp TTSCEEEEETTTCCE-----EEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEEC--------CCSSC
T ss_pred CCCcEEEEECCCCcE-----EEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEEC--------CCCCc
Confidence 466788888654432 22334899999999998 6699999999999999999987665543 46789
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEee
Q psy8448 153 VMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFR 232 (482)
Q Consensus 153 i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 232 (482)
|.+++|+ ++.+++|+.||.|++||+.+++.+..+ ..|...|.+++| ++.++++++.||.|++||+++++.+..+.
T Consensus 202 v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 276 (445)
T 2ovr_B 202 VRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVL-MGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQ 276 (445)
T ss_dssp EEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEE-ECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEEC
T ss_pred EEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEE-cCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEec
Confidence 9999996 568999999999999999999998888 689999999999 68899999999999999999999999999
Q ss_pred ccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-C
Q psy8448 233 GHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-Q 311 (482)
Q Consensus 233 ~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~ 311 (482)
+|...|.+++| ++.++++++.||.|++||+++++.+..+. .|...+.++.+.+ .++++++.||.|++||+ +
T Consensus 277 ~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~~---~~l~~~~~dg~i~vwd~~~ 348 (445)
T 2ovr_B 277 GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLT---GHQSLTSGMELKD---NILVSGNADSTVKIWDIKT 348 (445)
T ss_dssp CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEEC---CCCSCEEEEEEET---TEEEEEETTSCEEEEETTT
T ss_pred CCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEc---CCcccEEEEEEeC---CEEEEEeCCCeEEEEECCC
Confidence 99999999999 78899999999999999999999888877 7888888888753 68999999999999999 6
Q ss_pred CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceecc
Q psy8448 312 GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADI 391 (482)
Q Consensus 312 ~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (482)
++.+..+.....+...|.+++|+ +++|++|+.||.|+ +|+..+++.+..+..
T Consensus 349 ~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~------------------iwd~~~~~~~~~~~~-------- 400 (445)
T 2ovr_B 349 GQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVK------------------LWDLKTGEFIRNLVT-------- 400 (445)
T ss_dssp CCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEE------------------EEETTTCCEEEEEEE--------
T ss_pred CcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEE------------------EEECCCCceeeeeec--------
Confidence 88888888765568899999995 67999999999999 555555522211100
Q ss_pred CCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEE
Q psy8448 392 NNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLG 471 (482)
Q Consensus 392 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~ 471 (482)
. ...+|.+.|++++|+|++.+||
T Consensus 401 -----------------------------------------------~----------~~~~~~~~v~~~~~s~~~~~la 423 (445)
T 2ovr_B 401 -----------------------------------------------L----------ESGGSGGVVWRIRASNTKLVCA 423 (445)
T ss_dssp -----------------------------------------------C----------TTGGGTCEEEEEEECSSEEEEE
T ss_pred -----------------------------------------------c----------ccCCCCceEEEEEecCCEEEEE
Confidence 0 1246888999999999999999
Q ss_pred EEecCce----eecC
Q psy8448 472 TYSEDGL----LRFS 482 (482)
Q Consensus 472 s~~~Dg~----i~iW 482 (482)
+|+.||+ |.||
T Consensus 424 ~~~~dg~~~~~l~v~ 438 (445)
T 2ovr_B 424 VGSRNGTEETKLLVL 438 (445)
T ss_dssp EECSSSSSCCEEEEE
T ss_pred EcccCCCCccEEEEE
Confidence 9999997 7776
No 71
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=7.7e-37 Score=305.39 Aligned_cols=310 Identities=15% Similarity=0.152 Sum_probs=251.0
Q ss_pred cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCC----ceeecccccccccccccccc-EEEEEEcC--CCCEEEEEe
Q psy8448 97 FGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTG----KIRKDLKYQAQDNFMLMEEA-VMSLAYSR--DSEMLASGS 169 (482)
Q Consensus 97 ~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~----~~~~~~~~~~~~~~~~h~~~-i~~l~~~~--~~~~l~~~~ 169 (482)
..|.+.|.+++|+|++++|++++ ++.|++||+.++ +.... +.+|... |++++|+| ++++|++++
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~--------~~~h~~~~v~~~~~sp~~~~~~l~s~~ 85 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQ--------FTGHGSSVVTTVKFSPIKGSQYLCSGD 85 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEE--------ECTTTTSCEEEEEECSSTTCCEEEEEE
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceE--------EecCCCceEEEEEECcCCCCCEEEEec
Confidence 37899999999999999999998 789999999977 44333 3456788 99999999 999999999
Q ss_pred CCCcEEEEEcCCC--------eEeEEeecccCCCeEEEEEccCCCEEEEEECC----CeEEEEeCCCCceEEEeeccccc
Q psy8448 170 QSGKVKIWKIATG--------QCLRKLEKAHSLGVTCIQFSRDNSQILTASFD----TYVRIHGLKSGKMLKEFRGHSSF 237 (482)
Q Consensus 170 ~dg~i~iwd~~~~--------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~ 237 (482)
.||.|++||+.++ +....+ ..|...|.+++|+|++++|++++.+ +.|++|| .++.+..+.+|...
T Consensus 86 ~dg~v~vw~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~ 162 (615)
T 1pgu_A 86 ESGKVIVWGWTFDKESNSVEVNVKSEF-QVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQR 162 (615)
T ss_dssp TTSEEEEEEEEEEGGGTEEEEEEEEEE-ECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSC
T ss_pred CCCEEEEEeCCCCcccccccccccchh-hcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCcc
Confidence 9999999999754 555566 5789999999999999999999988 6888888 67788899999999
Q ss_pred eeEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeeeeeccCCCcc---ceeEEEEcCC-CCCEEEEEeCCCeEEEEEc-C
Q psy8448 238 VNDITFTADGH-SVLSASSDGTVKMWNLKTTECTSTFKSLGASDI---AVNSIHLLPK-NTEHFVVCNKTNTVVIMNM-Q 311 (482)
Q Consensus 238 i~~l~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~v~~i~~~~~-~~~~l~~~~~d~~i~i~d~-~ 311 (482)
|.+++|+|+++ .+++++.|+.|++||+++++....+. .|.. .|.+++|+|+ + .++++++.|+.|++||+ +
T Consensus 163 v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~ 238 (615)
T 1pgu_A 163 INACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR---THHKQGSFVRDVEFSPDSG-EFVITVGSDRKISCFDGKS 238 (615)
T ss_dssp EEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC---SSSCTTCCEEEEEECSTTC-CEEEEEETTCCEEEEETTT
T ss_pred EEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeec---ccCCCCceEEEEEECCCCC-CEEEEEeCCCeEEEEECCC
Confidence 99999999998 89999999999999999998888877 6777 8999999999 6 89999999999999999 6
Q ss_pred CcEEEEe-cCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccc----c
Q psy8448 312 GQIVRSL-SSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVD----G 386 (482)
Q Consensus 312 ~~~~~~~-~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 386 (482)
++.+..+ .....+...|.+++|+ ++++|++++.||.|++|+++. +.....+..+. .
T Consensus 239 ~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~------------------~~~~~~~~~~~~~~~~ 299 (615)
T 1pgu_A 239 GEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTT------------------SKCVQKWTLDKQQLGN 299 (615)
T ss_dssp CCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTT------------------TEEEEEEECCTTCGGG
T ss_pred CCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCC------------------CcEEEEEcCCCCcccC
Confidence 7777777 3111237899999999 999999999999999777652 22222221110 0
Q ss_pred --------ceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccce
Q psy8448 387 --------FIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLV 458 (482)
Q Consensus 387 --------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 458 (482)
.-..+..+..++.+..| +..++.++..+.+|...|
T Consensus 300 ~~~~~~~~~~~~l~~~~~~g~i~~~-------------------------------------d~~~~~~~~~~~~~~~~v 342 (615)
T 1pgu_A 300 QQVGVVATGNGRIISLSLDGTLNFY-------------------------------------ELGHDEVLKTISGHNKGI 342 (615)
T ss_dssp CEEEEEEEETTEEEEEETTSCEEEE-------------------------------------ETTEEEEEEEECCCSSCE
T ss_pred ceeEEEeCCCCeEEEEECCCCEEEE-------------------------------------ECCCCcEEEEEeCCCCCE
Confidence 00123333344444333 223344444788999999
Q ss_pred eeccccCCcceEEEEecCceeecC
Q psy8448 459 IGLTHHPHQNLLGTYSEDGLLRFS 482 (482)
Q Consensus 459 ~~~~~sp~~~~l~s~~~Dg~i~iW 482 (482)
++++| |+ |++++.||.|++|
T Consensus 343 ~~~~~-~~---l~~~~~dg~i~~w 362 (615)
T 1pgu_A 343 TALTV-NP---LISGSYDGRIMEW 362 (615)
T ss_dssp EEEET-TT---TEEEETTSCEEET
T ss_pred EEEEe-cC---cEEECCCCeEEEE
Confidence 99999 88 9999999999998
No 72
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.8e-37 Score=282.76 Aligned_cols=249 Identities=17% Similarity=0.175 Sum_probs=200.4
Q ss_pred cccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe--EeEEeecccCCCeEEEEEcc--CCCEEEEEECCCeEEEEe
Q psy8448 146 FMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ--CLRKLEKAHSLGVTCIQFSR--DNSQILTASFDTYVRIHG 221 (482)
Q Consensus 146 ~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~dg~i~i~d 221 (482)
+.+|.+.|++++|+|++++|++|+.|++|++||+.++. .+..+ .+|...|.+++|++ ++.+|++|+.|+.|++||
T Consensus 9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l-~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADL-RGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEE-ECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEE-cCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 34688999999999999999999999999999998775 34556 68999999999975 488999999999999999
Q ss_pred CCCC--ceEEEeeccccceeEEEEcCC--CCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCC-----
Q psy8448 222 LKSG--KMLKEFRGHSSFVNDITFTAD--GHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKN----- 292 (482)
Q Consensus 222 ~~~~--~~~~~~~~~~~~i~~l~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~----- 292 (482)
++++ +....+.+|...|.+++|+|+ +.+|++++.|+.|++||++.+...........|...+.+++|+|+.
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 9887 356678889999999999997 7899999999999999998764332223334788899999999973
Q ss_pred -----------CCEEEEEeCCCeEEEEEcC-Cc---EEEEecCCcccCcCEEEEEEcCCC----CEEEEEeCCcEEEEEe
Q psy8448 293 -----------TEHFVVCNKTNTVVIMNMQ-GQ---IVRSLSSGKREGGDFLCCTTSPRG----EWIYCVGEDMVLVVRL 353 (482)
Q Consensus 293 -----------~~~l~~~~~d~~i~i~d~~-~~---~~~~~~~~~~~~~~v~~~~~~~~g----~~l~~~~~dg~i~iw~ 353 (482)
..+|++++.|+.|++||++ +. .+..+. .|...|.+++|+|++ ++|++++.|+.|++|+
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~---~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~ 244 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE---AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT 244 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB---CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEE
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc---cCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEE
Confidence 2689999999999999995 32 334443 347899999999987 8999999999999554
Q ss_pred ehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhh
Q psy8448 354 IQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAA 433 (482)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (482)
+ .++.. + ..
T Consensus 245 ~------------------~~~~~--------~--------------------~~------------------------- 253 (316)
T 3bg1_A 245 C------------------DDASS--------N--------------------TW------------------------- 253 (316)
T ss_dssp C------------------SSTTC--------C--------------------CC-------------------------
T ss_pred c------------------cCccc--------c--------------------ch-------------------------
Confidence 3 32100 0 00
Q ss_pred hhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448 434 RSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS 482 (482)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW 482 (482)
... .+..|...|.+++|+|++++||+|+.||+|+||
T Consensus 254 ---~~~----------~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw 289 (316)
T 3bg1_A 254 ---SPK----------LLHKFNDVVWHVSWSITANILAVSGGDNKVTLW 289 (316)
T ss_dssp ---BCC----------EEEECSSCEEEEEECTTTCCEEEEESSSCEEEE
T ss_pred ---hhh----------hhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEE
Confidence 001 345788899999999999999999999999998
No 73
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.7e-36 Score=304.02 Aligned_cols=269 Identities=21% Similarity=0.359 Sum_probs=223.4
Q ss_pred cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccccccccccccc
Q psy8448 73 FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEA 152 (482)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~ 152 (482)
.++.+.+|+..............+.+|...|++++|+|++++|++|+.||+|+|||+.+++....+ .+|...
T Consensus 403 ~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~--------~~h~~~ 474 (694)
T 3dm0_A 403 RDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRF--------VGHTKD 474 (694)
T ss_dssp TTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE--------ECCSSC
T ss_pred CCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEE--------eCCCCC
Confidence 467789998776554444444556799999999999999999999999999999999988765443 356889
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEee--cccCCCeEEEEEccCC--CEEEEEECCCeEEEEeCCCCceE
Q psy8448 153 VMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLE--KAHSLGVTCIQFSRDN--SQILTASFDTYVRIHGLKSGKML 228 (482)
Q Consensus 153 i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~i~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~ 228 (482)
|.+++|+|++++|++++.|++|++||+.......... .+|...|.+++|+|++ ..+++++.|+.|++||+++++..
T Consensus 475 v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~ 554 (694)
T 3dm0_A 475 VLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR 554 (694)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEE
T ss_pred EEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEE
Confidence 9999999999999999999999999986554333221 3578889999999986 58999999999999999999999
Q ss_pred EEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEE
Q psy8448 229 KEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIM 308 (482)
Q Consensus 229 ~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~ 308 (482)
..+.+|.+.|.+++|+|++++|++++.||.|++||+++++.+..+. +...+.+++|+|++ .+++++ .++.|++|
T Consensus 555 ~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~sp~~-~~l~~~-~~~~i~iw 628 (694)
T 3dm0_A 555 STLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE----ANSVIHALCFSPNR-YWLCAA-TEHGIKIW 628 (694)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB----CSSCEEEEEECSSS-SEEEEE-ETTEEEEE
T ss_pred EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec----CCCcEEEEEEcCCC-cEEEEE-cCCCEEEE
Confidence 9999999999999999999999999999999999999998877763 45679999999987 555554 56679999
Q ss_pred Ec-CCcEEEEecCCcc----------------cCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448 309 NM-QGQIVRSLSSGKR----------------EGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ 355 (482)
Q Consensus 309 d~-~~~~~~~~~~~~~----------------~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~ 355 (482)
|+ .+..+..+..... +...+++++|+|+|++|++|+.||.|++|++.
T Consensus 629 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 629 DLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp ETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 99 4555655543211 11247889999999999999999999988875
No 74
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.4e-36 Score=277.86 Aligned_cols=267 Identities=22% Similarity=0.391 Sum_probs=227.3
Q ss_pred cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccccccccccccc
Q psy8448 73 FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEA 152 (482)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~ 152 (482)
.++.+.+|+..............+.+|...|.+++|+|++++|++|+.|+.|++|+............ +...
T Consensus 59 ~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~--------~~~~ 130 (340)
T 4aow_A 59 RDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVG--------HTKD 130 (340)
T ss_dssp TTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC--------CSSC
T ss_pred CCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecC--------CCCc
Confidence 36789999987766655555566679999999999999999999999999999999988776554433 3567
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCC--CEEEEEECCCeEEEEeCCCCceEEE
Q psy8448 153 VMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDN--SQILTASFDTYVRIHGLKSGKMLKE 230 (482)
Q Consensus 153 i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~ 230 (482)
+..+.+++++++|++++.|+.+++||+............|...+.+++|++++ ..+++++.|+.|++||+++++.+..
T Consensus 131 ~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~ 210 (340)
T 4aow_A 131 VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN 210 (340)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEE
T ss_pred eeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeE
Confidence 88999999999999999999999999987776665557889999999998864 5788999999999999999999999
Q ss_pred eeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc
Q psy8448 231 FRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM 310 (482)
Q Consensus 231 ~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~ 310 (482)
+.+|.+.|++++|+|++++|++++.||.|++||+++.+.+..+. +...+.++.|+|++ .+++++.|+.|++||+
T Consensus 211 ~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~ 284 (340)
T 4aow_A 211 HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD----GGDIINALCFSPNR--YWLCAATGPSIKIWDL 284 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE----CSSCEEEEEECSSS--SEEEEEETTEEEEEET
T ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec----CCceEEeeecCCCC--ceeeccCCCEEEEEEC
Confidence 99999999999999999999999999999999999999888774 45689999999985 5667778999999999
Q ss_pred C-CcEEEEecC------CcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448 311 Q-GQIVRSLSS------GKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRL 353 (482)
Q Consensus 311 ~-~~~~~~~~~------~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~ 353 (482)
+ +..+..+.. ...+...|++++|+|+|++|++|+.||.|+||+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 285 EGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp TTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 5 444444432 123578899999999999999999999999443
No 75
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.3e-35 Score=286.16 Aligned_cols=238 Identities=22% Similarity=0.375 Sum_probs=207.2
Q ss_pred eeecCCCCcE-EEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCC
Q psy8448 94 QIKFGSKSHV-ECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSG 172 (482)
Q Consensus 94 ~~~~~h~~~v-~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg 172 (482)
..+.+|...| .++.+ ++++|++|+.||+|++||+.+++....+. +|...|++++|+|++ +|++|+.||
T Consensus 115 ~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~--------~h~~~V~~l~~~~~~-~l~s~s~dg 183 (464)
T 3v7d_B 115 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLS--------GHDGGVWALKYAHGG-ILVSGSTDR 183 (464)
T ss_dssp EEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEEC--------CCSSCEEEEEECSTT-EEEEEETTS
T ss_pred EEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEe--------CCCcCEEEEEEcCCC-EEEEEeCCC
Confidence 3455888875 66666 56799999999999999999988665544 468999999999988 899999999
Q ss_pred cEEEEEcCCCeEeEEeecccCCCeEEEEEcc--CCCEEEEEECCCeEEEEeCCCCce-----------------------
Q psy8448 173 KVKIWKIATGQCLRKLEKAHSLGVTCIQFSR--DNSQILTASFDTYVRIHGLKSGKM----------------------- 227 (482)
Q Consensus 173 ~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~dg~i~i~d~~~~~~----------------------- 227 (482)
.|++||+++++.+..+ ..|...|.+++|++ ++.++++++.|+.|++||+++++.
T Consensus 184 ~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (464)
T 3v7d_B 184 TVRVWDIKKGCCTHVF-EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF 262 (464)
T ss_dssp CEEEEETTTTEEEEEE-CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTE
T ss_pred CEEEEECCCCcEEEEE-CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEE
Confidence 9999999999998888 68999999999984 778999999999999999987653
Q ss_pred EEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEE
Q psy8448 228 LKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVI 307 (482)
Q Consensus 228 ~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i 307 (482)
+..+.+|...+.++ +++++++++++.||.|++||+++++++..+. +|...|.+++|+|++ ..+++++.|+.|++
T Consensus 263 ~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~-~~l~sg~~dg~i~v 336 (464)
T 3v7d_B 263 VGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILS---GHTDRIYSTIYDHER-KRCISASMDTTIRI 336 (464)
T ss_dssp EEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCEEEEEEETTT-TEEEEEETTSCEEE
T ss_pred EEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEec---CCCCCEEEEEEcCCC-CEEEEEeCCCcEEE
Confidence 44667788888777 5678999999999999999999999888887 788999999999998 89999999999999
Q ss_pred EEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448 308 MNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLI 354 (482)
Q Consensus 308 ~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~ 354 (482)
||+ +++.+..+..+ ...|.+++|+ +++|++++.||.|++|++
T Consensus 337 wd~~~~~~~~~~~~h---~~~v~~~~~~--~~~l~s~s~dg~v~vwd~ 379 (464)
T 3v7d_B 337 WDLENGELMYTLQGH---TALVGLLRLS--DKFLVSAAADGSIRGWDA 379 (464)
T ss_dssp EETTTTEEEEEECCC---SSCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred EECCCCcEEEEEeCC---CCcEEEEEEc--CCEEEEEeCCCcEEEEEC
Confidence 999 68888888765 7789999997 579999999999995543
No 76
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=5.1e-36 Score=286.15 Aligned_cols=231 Identities=25% Similarity=0.403 Sum_probs=204.3
Q ss_pred cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEE
Q psy8448 97 FGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKI 176 (482)
Q Consensus 97 ~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~i 176 (482)
.+|...|.|+++ ++++|++|+.||.|++||+.+++....+. +|...|.+++| ++++|++|+.||.|++
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~--------~h~~~v~~l~~--~~~~l~sg~~dg~i~v 197 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILT--------GHTGSVLCLQY--DERVIITGSSDSTVRV 197 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEEC--------CCSSCEEEEEC--CSSEEEEEETTSCEEE
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEc--------CCCCcEEEEEE--CCCEEEEEcCCCeEEE
Confidence 367788999887 78999999999999999999887665543 46789999999 7889999999999999
Q ss_pred EEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceE---EEeeccccceeEEEEcCCCCEEEEE
Q psy8448 177 WKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKML---KEFRGHSSFVNDITFTADGHSVLSA 253 (482)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~i~~l~~~~~~~~l~~~ 253 (482)
||+.+++.+..+ ..|...|.+++|+ +..+++|+.||.|++||+++++.. ..+.+|...|.+++| ++++++++
T Consensus 198 wd~~~~~~~~~~-~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~ 272 (435)
T 1p22_A 198 WDVNTGEMLNTL-IHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSA 272 (435)
T ss_dssp EESSSCCEEEEE-CCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEE
T ss_pred EECCCCcEEEEE-cCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEE
Confidence 999999999888 6899999999996 459999999999999999988765 667789999999999 67899999
Q ss_pred eCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEE
Q psy8448 254 SSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCT 332 (482)
Q Consensus 254 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~ 332 (482)
+.||.|++||+++++.+..+. .|...|.++.+.+ .++++++.|+.|++||+ +++.+..+..+ ...|.+++
T Consensus 273 ~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~---~~l~~g~~dg~i~iwd~~~~~~~~~~~~h---~~~v~~~~ 343 (435)
T 1p22_A 273 SGDRTIKVWNTSTCEFVRTLN---GHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGACLRVLEGH---EELVRCIR 343 (435)
T ss_dssp ETTSEEEEEETTTCCEEEEEE---CCSSCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEEEECCC---SSCEEEEE
T ss_pred eCCCeEEEEECCcCcEEEEEc---CCCCcEEEEEeCC---CEEEEEeCCCeEEEEECCCCCEEEEEeCC---cCcEEEEE
Confidence 999999999999999988887 7888999999953 79999999999999999 58888888765 77899999
Q ss_pred EcCCCCEEEEEeCCcEEEEEeeh
Q psy8448 333 TSPRGEWIYCVGEDMVLVVRLIQ 355 (482)
Q Consensus 333 ~~~~g~~l~~~~~dg~i~iw~~~ 355 (482)
| ++.+|++|+.||.|++|++.
T Consensus 344 ~--~~~~l~sg~~dg~i~vwd~~ 364 (435)
T 1p22_A 344 F--DNKRIVSGAYDGKIKVWDLV 364 (435)
T ss_dssp C--CSSEEEEEETTSCEEEEEHH
T ss_pred e--cCCEEEEEeCCCcEEEEECC
Confidence 9 78899999999999966543
No 77
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.1e-35 Score=286.50 Aligned_cols=250 Identities=17% Similarity=0.258 Sum_probs=212.9
Q ss_pred cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccccccccccccc
Q psy8448 73 FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEA 152 (482)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~ 152 (482)
.++.+.+|+...... ...+.+|.+.|++++|+|++ +|++|+.||+|++||+.+++....+. +|...
T Consensus 140 ~dg~i~vwd~~~~~~-----~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~--------~h~~~ 205 (464)
T 3v7d_B 140 DDKMIRVYDSINKKF-----LLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFE--------GHNST 205 (464)
T ss_dssp TTSCEEEEETTTTEE-----EEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEEC--------CCSSC
T ss_pred CCCcEEEEECCCCcE-----EEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEEC--------CCCCc
Confidence 467788888654432 22334899999999999988 99999999999999999987665443 46789
Q ss_pred EEEEEEc--CCCCEEEEEeCCCcEEEEEcCCCeE-----------------------eEEeecccCCCeEEEEEccCCCE
Q psy8448 153 VMSLAYS--RDSEMLASGSQSGKVKIWKIATGQC-----------------------LRKLEKAHSLGVTCIQFSRDNSQ 207 (482)
Q Consensus 153 i~~l~~~--~~~~~l~~~~~dg~i~iwd~~~~~~-----------------------~~~~~~~~~~~v~~i~~~~~~~~ 207 (482)
|.+++|+ ++++++++++.||.|++||+.++.. ...+ .+|...+.++ ++++.+
T Consensus 206 v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~--~~~~~~ 282 (464)
T 3v7d_B 206 VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL-RGHMASVRTV--SGHGNI 282 (464)
T ss_dssp EEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE-CCCSSCEEEE--EEETTE
T ss_pred cEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc-cCccceEEEE--cCCCCE
Confidence 9999999 4778999999999999999987653 2233 5778888877 567899
Q ss_pred EEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEE
Q psy8448 208 ILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIH 287 (482)
Q Consensus 208 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~ 287 (482)
+++++.|+.|++||+++++.+..+.+|...|.+++|+|+++++++++.||.|++||+++++++..+. .|...|.++.
T Consensus 283 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~---~h~~~v~~~~ 359 (464)
T 3v7d_B 283 VVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ---GHTALVGLLR 359 (464)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCEEEEE
T ss_pred EEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe---CCCCcEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999888887 8899999999
Q ss_pred EcCCCCCEEEEEeCCCeEEEEEcC-CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448 288 LLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLV 350 (482)
Q Consensus 288 ~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~ 350 (482)
+++ .++++++.||.|++||+. +........ ...+..++|++++++|++|+ ||.|+
T Consensus 360 ~~~---~~l~s~s~dg~v~vwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~-dg~i~ 415 (464)
T 3v7d_B 360 LSD---KFLVSAAADGSIRGWDANDYSRKFSYHH----TNLSAITTFYVSDNILVSGS-ENQFN 415 (464)
T ss_dssp ECS---SEEEEEETTSEEEEEETTTCCEEEEEEC----TTCCCEEEEEECSSEEEEEE-TTEEE
T ss_pred EcC---CEEEEEeCCCcEEEEECCCCceeeeecC----CCCccEEEEEeCCCEEEEec-CCeEE
Confidence 984 789999999999999994 454444432 45677889999999999998 89999
No 78
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=4.4e-36 Score=280.08 Aligned_cols=287 Identities=13% Similarity=0.198 Sum_probs=227.5
Q ss_pred eeecCCCCcEEEEEEcCC---CCEEEEEeCCCeEEEEecCC-CceeeccccccccccccccccEEEEEEcCCCCEEEEEe
Q psy8448 94 QIKFGSKSHVECARFSPD---GQYLITGSVDGFIEVWNFTT-GKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS 169 (482)
Q Consensus 94 ~~~~~h~~~v~~~~~s~~---~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~ 169 (482)
.++.+|.+.|++++|+|+ |++|++|+.||.|++||+.+ +.... ..+.+|...|++++|+|++++|++++
T Consensus 33 ~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~-------~~~~~h~~~v~~~~~~~~~~~l~s~~ 105 (368)
T 3mmy_A 33 EVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP-------KAQQMHTGPVLDVCWSDDGSKVFTAS 105 (368)
T ss_dssp ECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE-------EEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred EeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE-------EEeccccCCEEEEEECcCCCEEEEEc
Confidence 455699999999999998 69999999999999999987 43321 12334689999999999999999999
Q ss_pred CCCcEEEEEcCCCeEeEEeecccCCCeEEEEE--ccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCC
Q psy8448 170 QSGKVKIWKIATGQCLRKLEKAHSLGVTCIQF--SRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADG 247 (482)
Q Consensus 170 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~ 247 (482)
.||.|++||+.+++.... ..|...|.+++| +|++.+|++++.||.|++||+++++.+..+..+. .+.++.+. .
T Consensus 106 ~dg~v~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~--~ 180 (368)
T 3mmy_A 106 CDKTAKMWDLSSNQAIQI--AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI--Y 180 (368)
T ss_dssp TTSEEEEEETTTTEEEEE--EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--T
T ss_pred CCCcEEEEEcCCCCceee--ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--C
Confidence 999999999999987764 469999999999 8899999999999999999999999988888654 56666665 4
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCC---CEEEEEeCCCeEEEEEcCC----cEEEEecC
Q psy8448 248 HSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNT---EHFVVCNKTNTVVIMNMQG----QIVRSLSS 320 (482)
Q Consensus 248 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~---~~l~~~~~d~~i~i~d~~~----~~~~~~~~ 320 (482)
..+++++.++.+.+|+++.......... ......+.++.+.+... ..+++++.|+.|++|+++. .....+..
T Consensus 181 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 259 (368)
T 3mmy_A 181 PMAVVATAERGLIVYQLENQPSEFRRIE-SPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKC 259 (368)
T ss_dssp TEEEEEEGGGCEEEEECSSSCEEEEECC-CSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEEC
T ss_pred CeeEEEeCCCcEEEEEeccccchhhhcc-ccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeee
Confidence 5788999999999999987654332221 13344555666655441 2399999999999999953 34445544
Q ss_pred Ccc---------cCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceecc
Q psy8448 321 GKR---------EGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADI 391 (482)
Q Consensus 321 ~~~---------~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (482)
+.. +...|.+++|+|++++|++++.||.|+ +|+..++
T Consensus 260 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~------------------iwd~~~~---------------- 305 (368)
T 3mmy_A 260 HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFS------------------FWDKDAR---------------- 305 (368)
T ss_dssp SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEE------------------EEETTTT----------------
T ss_pred eecccccccccccccceEEEEEecCCCEEEEEccCCeEE------------------EEECCCC----------------
Confidence 421 112699999999999999999999999 5555555
Q ss_pred CCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEE
Q psy8448 392 NNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLG 471 (482)
Q Consensus 392 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~ 471 (482)
++ .. .+.+|...|++++|+|+|++||
T Consensus 306 ---------------~~-----------------------------~~----------~~~~~~~~v~~~~~s~~g~~l~ 331 (368)
T 3mmy_A 306 ---------------TK-----------------------------LK----------TSEQLDQPISACCFNHNGNIFA 331 (368)
T ss_dssp ---------------EE-----------------------------EE----------ECCCCSSCEEEEEECTTSSCEE
T ss_pred ---------------cE-----------------------------EE----------EecCCCCCceEEEECCCCCeEE
Confidence 22 22 5668899999999999999999
Q ss_pred EEecCceeec
Q psy8448 472 TYSEDGLLRF 481 (482)
Q Consensus 472 s~~~Dg~i~i 481 (482)
+|+.|+..+.
T Consensus 332 ~~s~d~~~~~ 341 (368)
T 3mmy_A 332 YASSYDWSKG 341 (368)
T ss_dssp EEECCCSTTC
T ss_pred EEeccccccc
Confidence 9999886554
No 79
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1e-35 Score=307.06 Aligned_cols=270 Identities=21% Similarity=0.310 Sum_probs=226.5
Q ss_pred CCCceeec--cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccc
Q psy8448 65 PPGTTIDL--FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQA 142 (482)
Q Consensus 65 ~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 142 (482)
|+|..++. .++.+.+|+...... .....+|..+|++++|+|++++|++|+.||.|++||+.+++....+.
T Consensus 23 p~~~~la~~~~~g~v~iwd~~~~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~--- 94 (814)
T 3mkq_A 23 PTEPWVLTTLYSGRVEIWNYETQVE-----VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE--- 94 (814)
T ss_dssp SSSSEEEEEETTSEEEEEETTTTEE-----EEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE---
T ss_pred CCCCEEEEEeCCCEEEEEECCCCce-----EEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe---
Confidence 44444433 266788888654322 22334899999999999999999999999999999999988765553
Q ss_pred ccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-eEeEEeecccCCCeEEEEEcc-CCCEEEEEECCCeEEEE
Q psy8448 143 QDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATG-QCLRKLEKAHSLGVTCIQFSR-DNSQILTASFDTYVRIH 220 (482)
Q Consensus 143 ~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~i~ 220 (482)
+|...|++++|+|++++|++++.||.|++||+.++ .....+ ..|...|.+++|+| ++..|++++.||.|++|
T Consensus 95 -----~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vw 168 (814)
T 3mkq_A 95 -----AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF-EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168 (814)
T ss_dssp -----CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEE-ECCSSCEEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred -----cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEE-cCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 35789999999999999999999999999999987 444555 68999999999999 88899999999999999
Q ss_pred eCCCCceEEEeeccc-cceeEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEE
Q psy8448 221 GLKSGKMLKEFRGHS-SFVNDITFTA--DGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFV 297 (482)
Q Consensus 221 d~~~~~~~~~~~~~~-~~i~~l~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~ 297 (482)
|+++++....+..+. ..+.+++|+| ++.+|++++.||.|++||+++++....+. .|...|.+++|+|++ .+++
T Consensus 169 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~---~~~~~v~~~~~~~~~-~~l~ 244 (814)
T 3mkq_A 169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE---GHMSNVSFAVFHPTL-PIII 244 (814)
T ss_dssp ETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEE---CCSSCEEEEEECSSS-SEEE
T ss_pred ECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEc---CCCCCEEEEEEcCCC-CEEE
Confidence 999888877776555 8899999999 99999999999999999999999888887 788899999999998 7999
Q ss_pred EEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCE-EEEEeCCcEEEEEeeh
Q psy8448 298 VCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEW-IYCVGEDMVLVVRLIQ 355 (482)
Q Consensus 298 ~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~-l~~~~~dg~i~iw~~~ 355 (482)
+++.||.|++||. +++.+..+..+ ...+.+++|+|+|.. +++.+.++.+.+|++.
T Consensus 245 ~~~~dg~v~vwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (814)
T 3mkq_A 245 SGSEDGTLKIWNSSTYKVEKTLNVG---LERSWCIATHPTGRKNYIASGFDNGFTVLSLG 301 (814)
T ss_dssp EEETTSCEEEEETTTCSEEEEECCS---SSSEEEEEECTTCGGGEEEEEETTEEEEEECS
T ss_pred EEeCCCeEEEEECCCCcEEEEeecC---CCcEEEEEEccCCCceEEEEEeCCCEEEEEcC
Confidence 9999999999999 57777777665 678999999999873 2444446667766654
No 80
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.5e-36 Score=279.37 Aligned_cols=255 Identities=20% Similarity=0.229 Sum_probs=212.9
Q ss_pred eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCC--CCEEEEEeCC
Q psy8448 94 QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRD--SEMLASGSQS 171 (482)
Q Consensus 94 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~--~~~l~~~~~d 171 (482)
.++.+|.+.|++++|+|++++||+|+.||.|+|||+..+... ....+.+|...|++++|+|+ +++|++++.|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d 78 (379)
T 3jrp_A 5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK------LIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 78 (379)
T ss_dssp CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEE------EEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcce------eeeEecCCCCcEEEEEeCCCCCCCEEEEeccC
Confidence 345699999999999999999999999999999999743321 12233457899999999987 8999999999
Q ss_pred CcEEEEEcCCCe--EeEEeecccCCCeEEEEEccC--CCEEEEEECCCeEEEEeCCCCc--eEEEeeccccceeEEEEcC
Q psy8448 172 GKVKIWKIATGQ--CLRKLEKAHSLGVTCIQFSRD--NSQILTASFDTYVRIHGLKSGK--MLKEFRGHSSFVNDITFTA 245 (482)
Q Consensus 172 g~i~iwd~~~~~--~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~l~~~~ 245 (482)
|.|++||+.+++ ....+ ..|...|.+++|+|+ +.+|++++.|+.|++||++++. ....+..|...|.+++|+|
T Consensus 79 g~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 157 (379)
T 3jrp_A 79 GKVLIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP 157 (379)
T ss_dssp SCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECC
T ss_pred CEEEEEEcCCCceeEeeee-cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcC
Confidence 999999999887 55555 678999999999998 9999999999999999998874 4456678999999999999
Q ss_pred -------------CCCEEEEEeCCCcEEEEECCCCceee-eeeccCCCccceeEEEEcCCC--CCEEEEEeCCCeEEEEE
Q psy8448 246 -------------DGHSVLSASSDGTVKMWNLKTTECTS-TFKSLGASDIAVNSIHLLPKN--TEHFVVCNKTNTVVIMN 309 (482)
Q Consensus 246 -------------~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~v~~i~~~~~~--~~~l~~~~~d~~i~i~d 309 (482)
++.+|++++.||.|++||++++.... .......|...|.+++|+|++ ..++++++.|+.|++||
T Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd 237 (379)
T 3jrp_A 158 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 237 (379)
T ss_dssp CC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred ccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence 69999999999999999998765332 222233788999999999993 38999999999999999
Q ss_pred cCCc---EEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448 310 MQGQ---IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ 355 (482)
Q Consensus 310 ~~~~---~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~ 355 (482)
+... ....+.....+...+.+++|+|+|++|++++.||.|++|++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 238 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred CCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 9532 133333333457889999999999999999999999988876
No 81
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.9e-35 Score=275.10 Aligned_cols=278 Identities=14% Similarity=0.181 Sum_probs=225.8
Q ss_pred CCCceeec--cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccc
Q psy8448 65 PPGTTIDL--FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQA 142 (482)
Q Consensus 65 ~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 142 (482)
|+|..++. .++.+.+|+...... .. ...+.+|...|++++|+|++++|++++.||.|++||+.+++.......
T Consensus 18 ~~~~~l~~~~~d~~v~i~~~~~~~~--~~-~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-- 92 (372)
T 1k8k_C 18 KDRTQIAICPNNHEVHIYEKSGNKW--VQ-VHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVI-- 92 (372)
T ss_dssp TTSSEEEEECSSSEEEEEEEETTEE--EE-EEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEEC--
T ss_pred CCCCEEEEEeCCCEEEEEeCCCCcE--Ee-eeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEe--
Confidence 44444433 367788888654431 12 223348999999999999999999999999999999988764433322
Q ss_pred ccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeE---eEEeecccCCCeEEEEEccCCCEEEEEECCCeEEE
Q psy8448 143 QDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQC---LRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRI 219 (482)
Q Consensus 143 ~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i 219 (482)
..|...|.+++|+|++++|++++.|+.|++||+..+.. ...+...|...|.+++|+|++.+|++++.||.|++
T Consensus 93 ----~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~ 168 (372)
T 1k8k_C 93 ----LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRI 168 (372)
T ss_dssp ----CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ----ecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEE
Confidence 23578999999999999999999999999999988762 44444678899999999999999999999999999
Q ss_pred EeC------------------CCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCcc
Q psy8448 220 HGL------------------KSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDI 281 (482)
Q Consensus 220 ~d~------------------~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 281 (482)
||+ ..++.+..+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+. .+..
T Consensus 169 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~ 245 (372)
T 1k8k_C 169 FSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA---SETL 245 (372)
T ss_dssp EECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE---CSSC
T ss_pred EEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEc---cCCC
Confidence 995 3678888898999999999999999999999999999999999999888887 7888
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCeEEEEEcCC--cEEEE-------------------------------------ecCCc
Q psy8448 282 AVNSIHLLPKNTEHFVVCNKTNTVVIMNMQG--QIVRS-------------------------------------LSSGK 322 (482)
Q Consensus 282 ~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~~~-------------------------------------~~~~~ 322 (482)
++.+++|+|++ .+++++ .|+.|++|++.. ..... .....
T Consensus 246 ~v~~~~~~~~~-~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (372)
T 1k8k_C 246 PLLAVTFITES-SLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDS 323 (372)
T ss_dssp CEEEEEEEETT-EEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSS
T ss_pred CeEEEEEecCC-CEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccc
Confidence 99999999998 666666 999999999943 21110 11112
Q ss_pred ccCcCEEEEEEc-CCC---CEEEEEeCCcEEEEEeehh
Q psy8448 323 REGGDFLCCTTS-PRG---EWIYCVGEDMVLVVRLIQQ 356 (482)
Q Consensus 323 ~~~~~v~~~~~~-~~g---~~l~~~~~dg~i~iw~~~~ 356 (482)
.|...|++++|. ++| .+|++|+.||.|++|+++.
T Consensus 324 ~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 324 LHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp SSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred cccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 457899999966 676 9999999999999888764
No 82
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=8.9e-36 Score=277.87 Aligned_cols=268 Identities=15% Similarity=0.225 Sum_probs=223.1
Q ss_pred cCCccccccccccccccccceeeecCCCCcEEEEEEcCC----CCEEEEEeCCCeEEEEecCCCceeecccccccccccc
Q psy8448 73 FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPD----GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFML 148 (482)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~----~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 148 (482)
.++.+.+|+.........+.......|...|++++|+|+ +++|++|+.||.|++||+.+++....+. +
T Consensus 42 ~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--------~ 113 (366)
T 3k26_A 42 GSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--------G 113 (366)
T ss_dssp ETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEE--------S
T ss_pred CCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeec--------C
Confidence 466788888775554444443333358899999999998 6799999999999999999887765543 3
Q ss_pred ccccEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCeEeEEee--cccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCC
Q psy8448 149 MEEAVMSLAYSR-DSEMLASGSQSGKVKIWKIATGQCLRKLE--KAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSG 225 (482)
Q Consensus 149 h~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~ 225 (482)
|...|.+++|+| ++++|++++.||.|++||+++++.+..+. ..|...|.+++|+|++.+|++++.||.|++||++++
T Consensus 114 ~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 193 (366)
T 3k26_A 114 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSK 193 (366)
T ss_dssp CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSH
T ss_pred CCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCC
Confidence 578999999999 99999999999999999999998888773 468899999999999999999999999999999987
Q ss_pred ceEEEee----------------------------ccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCce--------
Q psy8448 226 KMLKEFR----------------------------GHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTEC-------- 269 (482)
Q Consensus 226 ~~~~~~~----------------------------~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------- 269 (482)
+....+. .|...|.+++|+ +++|++++.|+.|++||+++++.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 271 (366)
T 3k26_A 194 RMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPS 271 (366)
T ss_dssp HHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTT
T ss_pred ccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccC
Confidence 6544333 389999999998 77999999999999999988654
Q ss_pred ------eeeeeccCCCccceeEEEEcCC--CCCEEEEEeCCCeEEEEEcC-Cc----EEEEecCCcccCcCEEEEEEcCC
Q psy8448 270 ------TSTFKSLGASDIAVNSIHLLPK--NTEHFVVCNKTNTVVIMNMQ-GQ----IVRSLSSGKREGGDFLCCTTSPR 336 (482)
Q Consensus 270 ------~~~~~~~~~~~~~v~~i~~~~~--~~~~l~~~~~d~~i~i~d~~-~~----~~~~~~~~~~~~~~v~~~~~~~~ 336 (482)
+..+. .|...|.+++|+|+ + .++++++.||.|++||+. ++ ....+..+ .+...|.+++|+|+
T Consensus 272 ~~~~~~~~~~~---~~~~~v~~~~~s~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~ 346 (366)
T 3k26_A 272 ESNVTILGRFD---YSQCDIWYMRFSMDFWQ-KMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHH-KCGAAIRQTSFSRD 346 (366)
T ss_dssp CCCEEEEEEEE---CSSCCSSCCCCEECTTS-SEEEEECTTSCEEEEECCSSSGGGCEEEEECCT-TCCSCEEEEEECTT
T ss_pred Ccchheecccc---ccCCcEEEEEEcCCCCC-cEEEEEecCCcEEEEECCCCCCccccceEEccc-ccCCceEEEEeCCC
Confidence 34444 77888999999999 7 899999999999999995 32 34444433 23688999999999
Q ss_pred CCEEEEEeCCcEEEEEeeh
Q psy8448 337 GEWIYCVGEDMVLVVRLIQ 355 (482)
Q Consensus 337 g~~l~~~~~dg~i~iw~~~ 355 (482)
+++|++++.||.|++|++.
T Consensus 347 ~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 347 SSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp SSEEEEEETTSEEEEEEC-
T ss_pred CCeEEEEeCCCEEEEEEec
Confidence 9999999999999988753
No 83
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-34 Score=268.77 Aligned_cols=270 Identities=15% Similarity=0.203 Sum_probs=230.0
Q ss_pred CCCceeec--cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccc
Q psy8448 65 PPGTTIDL--FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQA 142 (482)
Q Consensus 65 ~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 142 (482)
|+|..+.. .++.+.+|+...... ...+.+|...|.+++|+|++++|++++.||.|++||+.+++....+.
T Consensus 42 ~~~~~l~~~~~dg~i~vwd~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--- 113 (369)
T 3zwl_B 42 KEGDLLFSCSKDSSASVWYSLNGER-----LGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK--- 113 (369)
T ss_dssp TTSCEEEEEESSSCEEEEETTTCCE-----EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE---
T ss_pred CCCCEEEEEeCCCEEEEEeCCCchh-----hhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee---
Confidence 44444443 366788888654332 23345899999999999999999999999999999999988776655
Q ss_pred ccccccccccEEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCeE-----------eEEeecccCC--CeEEEEEccC
Q psy8448 143 QDNFMLMEEAVMSLAYSRDSEMLASGSQS-----GKVKIWKIATGQC-----------LRKLEKAHSL--GVTCIQFSRD 204 (482)
Q Consensus 143 ~~~~~~h~~~i~~l~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~-----------~~~~~~~~~~--~v~~i~~~~~ 204 (482)
|...+.+++|+|+++++++++.+ |.|.+||+..+.. ...+ ..|.. .+.+++|+|+
T Consensus 114 ------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 186 (369)
T 3zwl_B 114 ------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKI-ITHEGLDAATVAGWSTK 186 (369)
T ss_dssp ------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEE-ECCTTCCCEEEEEECGG
T ss_pred ------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeec-cCCcCccceeEEEEcCC
Confidence 35789999999999999999998 9999999876532 2222 33444 8999999999
Q ss_pred CCEEEEEECCCeEEEEeCCC-CceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccce
Q psy8448 205 NSQILTASFDTYVRIHGLKS-GKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAV 283 (482)
Q Consensus 205 ~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 283 (482)
+++|++++.||.|++||+++ .+.+..+..|...|.+++|+|++++|++++.|+.|++||+++++....+. +...+
T Consensus 187 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~----~~~~~ 262 (369)
T 3zwl_B 187 GKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE----TDCPL 262 (369)
T ss_dssp GCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE----CSSCE
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec----CCCCc
Confidence 99999999999999999998 78888999999999999999999999999999999999999999888874 57789
Q ss_pred eEEEEcCCCCCEEEEEeCCC--------------eEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcE
Q psy8448 284 NSIHLLPKNTEHFVVCNKTN--------------TVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMV 348 (482)
Q Consensus 284 ~~i~~~~~~~~~l~~~~~d~--------------~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~ 348 (482)
..++|+|++ .++++++.++ .+++||. .++.+..+..+ ...|.+++|+|++++|++++.||.
T Consensus 263 ~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~s~~~dg~ 338 (369)
T 3zwl_B 263 NTAVITPLK-EFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH---FGPLNTVAISPQGTSYASGGEDGF 338 (369)
T ss_dssp EEEEECSSS-SEEEEEECCC-------------CEEEEEETTTCCEEEEEECC---SSCEEEEEECTTSSEEEEEETTSE
T ss_pred eeEEecCCC-ceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecc---cCcEEEEEECCCCCEEEEEcCCCe
Confidence 999999999 7888888887 8999999 67777777665 788999999999999999999999
Q ss_pred EEEEeehhh
Q psy8448 349 LVVRLIQQY 357 (482)
Q Consensus 349 i~iw~~~~~ 357 (482)
|++|+++..
T Consensus 339 v~iw~~~~~ 347 (369)
T 3zwl_B 339 IRLHHFEKS 347 (369)
T ss_dssp EEEEEECHH
T ss_pred EEEEECccc
Confidence 998887643
No 84
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-35 Score=278.71 Aligned_cols=313 Identities=14% Similarity=0.140 Sum_probs=229.4
Q ss_pred hhhccCCCCCCceeeccCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceee
Q psy8448 57 WQQHQGLLPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRK 136 (482)
Q Consensus 57 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~ 136 (482)
|-....+.|+|..++..+.+..+.+ ...+ +.+ .+|...|.+++|+|+| .++.+.+|+ ++...
T Consensus 17 ~v~sv~~SpDG~~iASas~D~TV~d---~~~~----~~l-~gh~~~v~~V~FsPdg-------~~~~~~~~~---~~~~~ 78 (588)
T 2j04_A 17 WKNNLTWARDGTLYLTTFPDISIGQ---PKYA----KDI-NCNSKNLFHVKEFPLE-------FENKLDFEL---AQQNG 78 (588)
T ss_dssp SSCCEEECTTSCEEEECSSSEEEEE---ECCC----SCC-SSBGGGTEEEEEECCC-------CCCTTTTSC---CCSSC
T ss_pred cEEEEEECCCCCEEEEEcCCceeec---cccc----cee-cCCCccEEEEEECCCC-------CcceEEEEe---CCCce
Confidence 4444455566666666666655552 2222 222 4899999999999998 355555554 33222
Q ss_pred ccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCC-----CeEEEEEccCCCEEEEE
Q psy8448 137 DLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSL-----GVTCIQFSRDNSQILTA 211 (482)
Q Consensus 137 ~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----~v~~i~~~~~~~~l~~~ 211 (482)
.+... |...|.+++|+|+|++||+++.||.|++||... .+..+ . |.. .+.+++|+|+|++|++|
T Consensus 79 ~~~~~-------~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l-~-~~~~~~~~sv~svafSPDG~~LAsg 147 (588)
T 2j04_A 79 LLNSQ-------PVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNL-D-SKGNLSSRTYHCFEWNPIESSIVVG 147 (588)
T ss_dssp SSTTS-------CSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEEC-C-CSSCSTTTCEEEEEECSSSSCEEEE
T ss_pred EeecC-------CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeec-c-CCCccccccEEEEEEcCCCCEEEEE
Confidence 22222 357899999999999999999999999999543 55555 3 554 59999999999999999
Q ss_pred ECCCeEEEEeCCCCce-------EEEe----eccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcee---eeeeccC
Q psy8448 212 SFDTYVRIHGLKSGKM-------LKEF----RGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECT---STFKSLG 277 (482)
Q Consensus 212 ~~dg~i~i~d~~~~~~-------~~~~----~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~ 277 (482)
+.||+|++||+.+++. +.++ .+|...|.+++|+|+| +++++.|+.|++||+..+... .++..
T Consensus 148 s~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~-- 223 (588)
T 2j04_A 148 NEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQN-- 223 (588)
T ss_dssp ETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEEC--
T ss_pred cCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecc--
Confidence 9999999999998853 5666 5677899999999999 888999999999999887742 33421
Q ss_pred CCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEE--cCCCCEEEEEeCCcEEEEEeeh
Q psy8448 278 ASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTT--SPRGEWIYCVGEDMVLVVRLIQ 355 (482)
Q Consensus 278 ~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~--~~~g~~l~~~~~dg~i~iw~~~ 355 (482)
+|...|.+++|+ + ..+++++ ++.|++||..+.....+..+ |...+..++| +|++..|+++++||. ++|..+
T Consensus 224 ~h~~~V~svaFs--g-~~LASa~-~~tIkLWd~~~~~~~~~~~g--h~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 224 ASRRKITDLKIV--D-YKVVLTC-PGYVHKIDLKNYSISSLKTG--SLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CCSSCCCCEEEE--T-TEEEEEC-SSEEEEEETTTTEEEEEECS--CCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred cccCcEEEEEEE--C-CEEEEEe-CCeEEEEECCCCeEEEEEcC--CCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 677899999999 4 6888887 69999999976666454432 3788999999 999999999999999 977654
Q ss_pred hhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhh
Q psy8448 356 QYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARS 435 (482)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (482)
.+... ++..+++. .++.+++|......
T Consensus 297 -------------~~~~s-----------------------------------pd~~l~a~----~d~~v~lW~~~g~~- 323 (588)
T 2j04_A 297 -------------ELHVT-----------------------------------ADNIIAPY----LEKKFKKWSTIWNE- 323 (588)
T ss_dssp -------------SEEEE-----------------------------------CCCSSHHH----HHHHHHHTTTTTTS-
T ss_pred -------------cEEEC-----------------------------------CCceEEEE----cCCEEEEEECCCCc-
Confidence 11111 22222222 26777777653222
Q ss_pred hccccCcccccccCcceecccceeeccccCCcceEEEEec
Q psy8448 436 LLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSE 475 (482)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~ 475 (482)
.. .+.+ ...|.+++|||||+.+|+++.
T Consensus 324 --l~----------~~~~-~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 324 --FN----------NYET-TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp --SS----------SSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred --ee----------eecc-ceEEEEEEECCCCCEEEEEEe
Confidence 11 4434 677999999999999999873
No 85
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-36 Score=289.91 Aligned_cols=276 Identities=9% Similarity=0.076 Sum_probs=216.3
Q ss_pred cCCccccccccccccccccceeeecCCCCcEEEEEEcCC------CCEEEEEeCCCeEEEEecCCCceeec---cccccc
Q psy8448 73 FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPD------GQYLITGSVDGFIEVWNFTTGKIRKD---LKYQAQ 143 (482)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~------~~~l~s~~~dg~v~iwd~~~~~~~~~---~~~~~~ 143 (482)
.++.+.+|+.......... ...+.+|.+.|.+++|+|+ +.+||+|+.||+|+|||+.+++.... ....+.
T Consensus 181 ~D~tI~iWd~~~~~~~~~~-~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~ 259 (524)
T 2j04_B 181 HSSCIQIFKMNTSTLHCVK-VQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPS 259 (524)
T ss_dssp -CEEEEEEEEETTTCCEEE-EEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCS
T ss_pred CCceEEEEEccCCCCCceE-EEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCce
Confidence 3667888987554322211 1223478899999999996 57999999999999999987653210 011122
Q ss_pred cccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEe-EEeecccCCCeEEE--EEccCC-CEEEEEECCCeEEE
Q psy8448 144 DNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCL-RKLEKAHSLGVTCI--QFSRDN-SQILTASFDTYVRI 219 (482)
Q Consensus 144 ~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~i--~~~~~~-~~l~~~~~dg~i~i 219 (482)
..+.+|...|++++|++++ .|++|+.||+|++||++++... ..+ ..|...|.++ +|+|++ .+|++|+.|++|++
T Consensus 260 ~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~-~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvkl 337 (524)
T 2j04_B 260 LTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYD-QVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYI 337 (524)
T ss_dssp EEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEE-ECSSSCEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred EEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEe-ecccccEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence 3456788999999999864 8999999999999999877443 344 6899999999 567887 89999999999999
Q ss_pred EeCCCCceEEEeecccc--ceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEE
Q psy8448 220 HGLKSGKMLKEFRGHSS--FVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFV 297 (482)
Q Consensus 220 ~d~~~~~~~~~~~~~~~--~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~ 297 (482)
||++++++...+.+|.. .|.+++|+|+++.+++++.|++|++||++++.+...+. +|...|++++|+|++ .+++
T Consensus 338 WD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~---gH~~~V~sva~Sp~g-~~l~ 413 (524)
T 2j04_B 338 FNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV---SRETTITAIGVSRLH-PMVL 413 (524)
T ss_dssp ECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE---ECSSCEEEEECCSSC-CBCE
T ss_pred EECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeee---cCCCceEEEEeCCCC-CeEE
Confidence 99999888777776653 58899999999999999999999999999998877776 789999999999998 7899
Q ss_pred EEeCCCeEEEEEcCCc---------------EEEEec---------------------------CCcccCcCEEEEEEcC
Q psy8448 298 VCNKTNTVVIMNMQGQ---------------IVRSLS---------------------------SGKREGGDFLCCTTSP 335 (482)
Q Consensus 298 ~~~~d~~i~i~d~~~~---------------~~~~~~---------------------------~~~~~~~~v~~~~~~~ 335 (482)
+|+.|++|++||...+ .+..+. ....|...|.+++|+|
T Consensus 414 Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp 493 (524)
T 2j04_B 414 AGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNE 493 (524)
T ss_dssp EEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECC
T ss_pred EEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCC
Confidence 9999999999986211 111110 0112467889999999
Q ss_pred CCC---EEEEEeCCcEEEEEeeh
Q psy8448 336 RGE---WIYCVGEDMVLVVRLIQ 355 (482)
Q Consensus 336 ~g~---~l~~~~~dg~i~iw~~~ 355 (482)
+++ ++++|+.||.|+||+++
T Consensus 494 ~~~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 494 TSAGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp STTTTTEEEEECTTSEEEEEECS
T ss_pred CCCccHHHHhhccCceEEEEEcc
Confidence 964 99999999999988764
No 86
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.7e-34 Score=276.53 Aligned_cols=232 Identities=23% Similarity=0.434 Sum_probs=203.0
Q ss_pred eeecCCCCcE-EEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCC
Q psy8448 94 QIKFGSKSHV-ECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSG 172 (482)
Q Consensus 94 ~~~~~h~~~v-~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg 172 (482)
..+.+|.+.| .|+ ++++++|++|+.||.|++||+.+++....+. +|...|.+++|+ ++++++|+.||
T Consensus 112 ~~l~~h~~~v~~~~--~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~--------~h~~~v~~~~~~--~~~l~s~~~dg 179 (445)
T 2ovr_B 112 KVLKGHDDHVITCL--QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV--------GHTGGVWSSQMR--DNIIISGSTDR 179 (445)
T ss_dssp EEEECSTTSCEEEE--EEETTEEEEEETTSCEEEEETTTCCEEEECC--------CCSSCEEEEEEE--TTEEEEEETTS
T ss_pred EEecccCCCcEEEE--EEcCCEEEEEECCCcEEEEECCCCcEEEEEc--------CCCCCEEEEEec--CCEEEEEeCCC
Confidence 4556898875 554 4568999999999999999999988765544 467899999998 56999999999
Q ss_pred cEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEE
Q psy8448 173 KVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLS 252 (482)
Q Consensus 173 ~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~ 252 (482)
.|++||+.+++.+..+ ..|...|.+++|+ +..+++|+.||.|++||+++++.+..+.+|...|.+++| +++++++
T Consensus 180 ~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~ 254 (445)
T 2ovr_B 180 TLKVWNAETGECIHTL-YGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVS 254 (445)
T ss_dssp CEEEEETTTTEEEEEE-CCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEE
T ss_pred eEEEEECCcCcEEEEE-CCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEE
Confidence 9999999999999888 6899999999995 568999999999999999999999999999999999999 6788999
Q ss_pred EeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEE
Q psy8448 253 ASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCC 331 (482)
Q Consensus 253 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~ 331 (482)
++.||.|++||+++++++..+. .|...|.++.| ++ ..+++++.|+.|++||+ +++.+..+..+ ...+.++
T Consensus 255 ~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~--~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~v~~~ 325 (445)
T 2ovr_B 255 GAYDFMVKVWDPETETCLHTLQ---GHTNRVYSLQF--DG-IHVVSGSLDTSIRVWDVETGNCIHTLTGH---QSLTSGM 325 (445)
T ss_dssp EETTSCEEEEEGGGTEEEEEEC---CCSSCEEEEEE--CS-SEEEEEETTSCEEEEETTTCCEEEEECCC---CSCEEEE
T ss_pred EcCCCEEEEEECCCCcEeEEec---CCCCceEEEEE--CC-CEEEEEeCCCeEEEEECCCCCEEEEEcCC---cccEEEE
Confidence 9999999999999999888887 78889999999 44 78999999999999999 67777777655 6677777
Q ss_pred EEcCCCCEEEEEeCCcEEEEEe
Q psy8448 332 TTSPRGEWIYCVGEDMVLVVRL 353 (482)
Q Consensus 332 ~~~~~g~~l~~~~~dg~i~iw~ 353 (482)
.+ +++++++|+.||.|++|+
T Consensus 326 ~~--~~~~l~~~~~dg~i~vwd 345 (445)
T 2ovr_B 326 EL--KDNILVSGNADSTVKIWD 345 (445)
T ss_dssp EE--ETTEEEEEETTSCEEEEE
T ss_pred EE--eCCEEEEEeCCCeEEEEE
Confidence 77 467999999999999444
No 87
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=8.1e-36 Score=283.74 Aligned_cols=263 Identities=19% Similarity=0.218 Sum_probs=217.5
Q ss_pred CCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccE
Q psy8448 74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAV 153 (482)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i 153 (482)
++.+.+|+.........+ ..| ..+....|+|++++|++|+.||.|++||+.+++....+ .+|...|
T Consensus 77 d~~v~i~d~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------~~h~~~v 142 (420)
T 3vl1_A 77 DGHDFLFNTIIRDGSKML-----KRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID--------QAHVSEI 142 (420)
T ss_dssp TTEEEEEECCSEETTTTS-----CSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET--------TSSSSCE
T ss_pred CCcEEEEEecccceeeEE-----ecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec--------ccccCcc
Confidence 677888886554433222 244 44556678999999999999999999999987665443 3467899
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeec
Q psy8448 154 MSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRG 233 (482)
Q Consensus 154 ~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 233 (482)
++++|+|++++|++++.|+.|++||+.+++.+..+ ..|...|.+++|+|++++|++++.|+.|++||+++++.+..+..
T Consensus 143 ~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 221 (420)
T 3vl1_A 143 TKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL-IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNR 221 (420)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE-ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECB
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE-cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeec
Confidence 99999999999999999999999999999988888 68999999999999999999999999999999999999888874
Q ss_pred ---cc---------------------cceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEc
Q psy8448 234 ---HS---------------------SFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLL 289 (482)
Q Consensus 234 ---~~---------------------~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~ 289 (482)
+. ..+.+++|+|++++|++++.||.|++||+++++....+.. .|...|.+++|+
T Consensus 222 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~ 299 (420)
T 3vl1_A 222 KENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPS--KFTCSCNSLTVD 299 (420)
T ss_dssp TTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECC--TTSSCEEEEEEC
T ss_pred CCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccc--ccCCCceeEEEe
Confidence 33 3444455678999999999999999999999987776643 578899999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEcC-C-cEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehh
Q psy8448 290 PKNTEHFVVCNKTNTVVIMNMQ-G-QIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQ 356 (482)
Q Consensus 290 ~~~~~~l~~~~~d~~i~i~d~~-~-~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~ 356 (482)
|++..++++++.||.|++||++ + ..+..+..++ ...+.++.+ +++++|++++.||.|++|++..
T Consensus 300 ~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~--~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 300 GNNANYIYAGYENGMLAQWDLRSPECPVGEFLINE--GTPINNVYF-AAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp SSCTTEEEEEETTSEEEEEETTCTTSCSEEEEEST--TSCEEEEEE-ETTEEEEEETTTEEEEEEEECC
T ss_pred CCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccC--CCCceEEEe-CCCCEEEEecCCccEEEEeccC
Confidence 9995599999999999999994 4 3355555432 567888855 5788999999999999888764
No 88
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.7e-34 Score=271.21 Aligned_cols=263 Identities=17% Similarity=0.256 Sum_probs=218.3
Q ss_pred ccCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccc
Q psy8448 72 LFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEE 151 (482)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~ 151 (482)
..++.+.+|+...... ...+...|...|++++|+|++++|++|+.||.|++||+.+++....+. +|..
T Consensus 110 ~~d~~v~lw~~~~~~~----~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~ 177 (401)
T 4aez_A 110 ALERNVYVWNADSGSV----SALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMA--------GHQA 177 (401)
T ss_dssp EETTEEEEEETTTCCE----EEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC--------CCSS
T ss_pred ECCCeEEEeeCCCCcE----eEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEec--------CCCC
Confidence 3467788888765432 223334589999999999999999999999999999999887665544 3578
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEE
Q psy8448 152 AVMSLAYSRDSEMLASGSQSGKVKIWKIAT-GQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKE 230 (482)
Q Consensus 152 ~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 230 (482)
.|.+++|+ +++|++++.||.|++||++. +.....+ ..|...|.+++|+|++.+|++++.|+.|++||+++++.+..
T Consensus 178 ~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 254 (401)
T 4aez_A 178 RVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTL-QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT 254 (401)
T ss_dssp CEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEE
T ss_pred ceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEE-cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEE
Confidence 99999994 57999999999999999984 4555555 68999999999999999999999999999999999999999
Q ss_pred eeccccceeEEEEcCCCC-EEEEEe--CCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEE--eCCCeE
Q psy8448 231 FRGHSSFVNDITFTADGH-SVLSAS--SDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVC--NKTNTV 305 (482)
Q Consensus 231 ~~~~~~~i~~l~~~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~--~~d~~i 305 (482)
+..|...|.+++|+|++. ++++++ .|+.|++||+++++....+. +...+.+++|+|++ ..++++ +.||.|
T Consensus 255 ~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~----~~~~v~~~~~s~~~-~~l~~~~g~~dg~i 329 (401)
T 4aez_A 255 KTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD----AGSQVTSLIWSPHS-KEIMSTHGFPDNNL 329 (401)
T ss_dssp ECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE----CSSCEEEEEECSSS-SEEEEEECTTTCEE
T ss_pred ecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe----CCCcEEEEEECCCC-CeEEEEeecCCCcE
Confidence 999999999999999765 555554 69999999999999888874 56789999999999 677774 489999
Q ss_pred EEEEcC-CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448 306 VIMNMQ-GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ 355 (482)
Q Consensus 306 ~i~d~~-~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~ 355 (482)
++|++. ++...... ...|...|.+++|+|+|++|++++.||.|++|++.
T Consensus 330 ~v~~~~~~~~~~~~~-~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 330 SIWSYSSSGLTKQVD-IPAHDTRVLYSALSPDGRILSTAASDENLKFWRVY 379 (401)
T ss_dssp EEEEEETTEEEEEEE-EECCSSCCCEEEECTTSSEEEEECTTSEEEEEECC
T ss_pred EEEecCCccceeEEE-ecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 999994 33333321 12237889999999999999999999999966543
No 89
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=9.2e-35 Score=274.28 Aligned_cols=273 Identities=17% Similarity=0.184 Sum_probs=224.4
Q ss_pred cCCcccccccccccc--ccccceeeecCCCCcEEEEEEcCC----C---CEEEEEeCCCeEEEEecCCCceeeccccccc
Q psy8448 73 FRGKAAMKDQEEEKY--PTQLSKQIKFGSKSHVECARFSPD----G---QYLITGSVDGFIEVWNFTTGKIRKDLKYQAQ 143 (482)
Q Consensus 73 ~~~~~~~~~~~~~~~--~~~~~~~~~~~h~~~v~~~~~s~~----~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 143 (482)
.++.+.+|+...... +.... ....+|...|++++|+|+ + ++|++++.||.|++||+.+++...... .
T Consensus 34 ~dg~i~iw~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~---~ 109 (397)
T 1sq9_A 34 GDGYLKVWDNKLLDNENPKDKS-YSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVI---F 109 (397)
T ss_dssp TTSEEEEEESBCCTTCCGGGGE-EEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEE---E
T ss_pred CCCEEEEEECCCcccccCCCcc-eEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccccc---c
Confidence 367788888765541 11222 233489999999999999 9 999999999999999998876511000 1
Q ss_pred cccccc-----cccEEEEEEc----CCCCE-EEEEeCCCcEEEEEcCC------CeEeE-----Eee------cccCCCe
Q psy8448 144 DNFMLM-----EEAVMSLAYS----RDSEM-LASGSQSGKVKIWKIAT------GQCLR-----KLE------KAHSLGV 196 (482)
Q Consensus 144 ~~~~~h-----~~~i~~l~~~----~~~~~-l~~~~~dg~i~iwd~~~------~~~~~-----~~~------~~~~~~v 196 (482)
..+..| ...|.+++|+ |++++ |++++.||.|++||+.+ ++.+. .+. ..|...|
T Consensus 110 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 189 (397)
T 1sq9_A 110 EKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFA 189 (397)
T ss_dssp EEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCC
T ss_pred eeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCc
Confidence 122234 4889999999 99999 99999999999999988 65554 552 3478889
Q ss_pred EEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeec---c---ccceeEEEEcCCCCEEEEEeCC---CcEEEEECCCC
Q psy8448 197 TCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRG---H---SSFVNDITFTADGHSVLSASSD---GTVKMWNLKTT 267 (482)
Q Consensus 197 ~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~---~~~i~~l~~~~~~~~l~~~~~d---g~i~i~d~~~~ 267 (482)
.+++|+|++ ++++++.|+.|++||+++++.+..+.. | ...|.+++|+|++++|++++.| |.|++||++++
T Consensus 190 ~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~ 268 (397)
T 1sq9_A 190 TSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG 268 (397)
T ss_dssp CEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC
T ss_pred eEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 999999999 999999999999999999999999998 8 9999999999999999999999 99999999999
Q ss_pred ceeeeeeccCC-------------CccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEec------CC------
Q psy8448 268 ECTSTFKSLGA-------------SDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLS------SG------ 321 (482)
Q Consensus 268 ~~~~~~~~~~~-------------~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~------~~------ 321 (482)
+.+..+. . |...|.+++|+|++ .+|++++.|+.|++||+ .++.+..+. .+
T Consensus 269 ~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (397)
T 1sq9_A 269 ERIGSLS---VPTHSSQASLGEFAHSSWVMSLSFNDSG-ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILA 344 (397)
T ss_dssp CEEEEEC---BC--------CCBSBSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCC
T ss_pred cccceec---cCcccccccccccccCCcEEEEEECCCC-CEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhc
Confidence 8888876 5 88999999999998 89999999999999999 677777776 32
Q ss_pred ------cccCcCEEEEEEcCCC----------CEEEEEeCCcEEEEEee
Q psy8448 322 ------KREGGDFLCCTTSPRG----------EWIYCVGEDMVLVVRLI 354 (482)
Q Consensus 322 ------~~~~~~v~~~~~~~~g----------~~l~~~~~dg~i~iw~~ 354 (482)
..|...|.+++|+|++ ++|++++.||.|++|++
T Consensus 345 g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~ 393 (397)
T 1sq9_A 345 VDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE 393 (397)
T ss_dssp BCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred cccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEc
Confidence 1126789999999998 79999999999996654
No 90
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.4e-34 Score=271.62 Aligned_cols=276 Identities=17% Similarity=0.233 Sum_probs=217.4
Q ss_pred CCCCC-ceeec--cCCccccccccccccccccceeeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCceeecc
Q psy8448 63 LLPPG-TTIDL--FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSP-DGQYLITGSVDGFIEVWNFTTGKIRKDL 138 (482)
Q Consensus 63 ~~~~g-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 138 (482)
+.|+| ..++. .++.+.+|+.......... ...+|...|.+++|+| ++++|++++.|+.|++||+.+.. ...+
T Consensus 81 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~ 156 (383)
T 3ei3_B 81 WHPTHPTTVAVGSKGGDIILWDYDVQNKTSFI---QGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSV-IQVF 156 (383)
T ss_dssp ECSSCTTEEEEEEBTSCEEEEETTSTTCEEEE---CCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCE-EEEE
T ss_pred ECCCCCCEEEEEcCCCeEEEEeCCCcccceee---ecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCc-eEEE
Confidence 34666 44444 3577888987654432221 1237999999999999 78999999999999999998533 3322
Q ss_pred ccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCC-EEEEEECCCeE
Q psy8448 139 KYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNS-QILTASFDTYV 217 (482)
Q Consensus 139 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~i 217 (482)
... ..|...|.+++|+|++++|++++.|+.|++||+ +++.+..+ ..|...|.+++|+|+++ ++++++.|+.|
T Consensus 157 ~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~i 229 (383)
T 3ei3_B 157 AKT-----DSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKE-KLHKAKVTHAEFNPRCDWLMATSSVDATV 229 (383)
T ss_dssp ECC-----CCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEE-ECSSSCEEEEEECSSCTTEEEEEETTSEE
T ss_pred ecc-----CCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEe-ccCCCcEEEEEECCCCCCEEEEEeCCCEE
Confidence 221 224578999999999999999999999999998 56777777 68999999999999998 89999999999
Q ss_pred EEEeCCC----CceEEEeeccccceeEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeeeeccC----CCc--------
Q psy8448 218 RIHGLKS----GKMLKEFRGHSSFVNDITFTA-DGHSVLSASSDGTVKMWNLKTTECTSTFKSLG----ASD-------- 280 (482)
Q Consensus 218 ~i~d~~~----~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~-------- 280 (482)
++||+++ ++.+..+ +|...|.+++|+| ++++|++++.|+.|++||+++++....+.... .+.
T Consensus 230 ~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (383)
T 3ei3_B 230 KLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWH 308 (383)
T ss_dssp EEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEEC
T ss_pred EEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEecc
Confidence 9999998 5566666 6999999999999 99999999999999999999887766654211 112
Q ss_pred --cceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448 281 --IAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ 355 (482)
Q Consensus 281 --~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~ 355 (482)
..+..++++|++ .+ +++.|+.|++||+ +++.+..+..+. +...+..++|+|++++|++|+ ||.|++|+++
T Consensus 309 p~~~~~~~~~s~dg-~~--s~s~d~~i~iwd~~~~~~~~~l~~~~-~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~ 381 (383)
T 3ei3_B 309 PMYDLIVAGRYPDD-QL--LLNDKRTIDIYDANSGGLVHQLRDPN-AAGIISLNKFSPTGDVLASGM-GFNILIWNRE 381 (383)
T ss_dssp SSSSEEEEECBCCT-TT--CTTCCCCEEEEETTTCCEEEEECBTT-BCSCCCEEEECTTSSEEEEEE-TTEEEEEECC
T ss_pred CCCCceEEEecCCc-cc--ccCCCCeEEEEecCCCceeeeecCCC-CCceEEEEEEecCccEEEEec-CCcEEEEecC
Confidence 234446666666 33 6678999999999 688888877542 256677789999999999997 9999988764
No 91
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=3e-35 Score=277.93 Aligned_cols=242 Identities=14% Similarity=0.177 Sum_probs=198.8
Q ss_pred cEEEEEEcCCCCEEE-EEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC-CCCEEEEEeCCCcEEEEEc
Q psy8448 102 HVECARFSPDGQYLI-TGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR-DSEMLASGSQSGKVKIWKI 179 (482)
Q Consensus 102 ~v~~~~~s~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~ 179 (482)
....++++|+...++ +++.||.|+||++.+.... ......+.+|...|++++|+| ++++|++|+.||.|++||+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~----~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~ 111 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV----DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEI 111 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC----CTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEEC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC----CCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEc
Confidence 345688998765444 5788999999999654322 112234566899999999999 9999999999999999999
Q ss_pred CCC-------eEeEEeecccCCCeEEEEEccCC-CEEEEEECCCeEEEEeCCCCceEEEe--eccccceeEEEEcCCCCE
Q psy8448 180 ATG-------QCLRKLEKAHSLGVTCIQFSRDN-SQILTASFDTYVRIHGLKSGKMLKEF--RGHSSFVNDITFTADGHS 249 (482)
Q Consensus 180 ~~~-------~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~i~~l~~~~~~~~ 249 (482)
.++ +.+..+ .+|...|.+++|+|++ .+|++++.|+.|++||+++++.+..+ ..|...|.+++|+|++++
T Consensus 112 ~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 190 (402)
T 2aq5_A 112 PDGGLVLPLREPVITL-EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGAL 190 (402)
T ss_dssp CTTCCSSCBCSCSEEE-ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSC
T ss_pred cCCCCccccCCceEEe-cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCE
Confidence 887 456666 6899999999999998 69999999999999999999999999 789999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCceeeeeeccCCCccc-eeEEEEcCCCCCEEEEE---eCCCeEEEEEcC-CcE-EEEecCCcc
Q psy8448 250 VLSASSDGTVKMWNLKTTECTSTFKSLGASDIA-VNSIHLLPKNTEHFVVC---NKTNTVVIMNMQ-GQI-VRSLSSGKR 323 (482)
Q Consensus 250 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-v~~i~~~~~~~~~l~~~---~~d~~i~i~d~~-~~~-~~~~~~~~~ 323 (482)
|++++.||.|++||+++++.+..+.. .|... +.++.|+|++ .+++++ +.|+.|++||++ ++. +......
T Consensus 191 l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~-- 265 (402)
T 2aq5_A 191 ICTSCRDKRVRVIEPRKGTVVAEKDR--PHEGTRPVHAVFVSEG-KILTTGFSRMSERQVALWDTKHLEEPLSLQELD-- 265 (402)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEEC--SSCSSSCCEEEECSTT-EEEEEEECTTCCEEEEEEETTBCSSCSEEEECC--
T ss_pred EEEEecCCcEEEEeCCCCceeeeecc--CCCCCcceEEEEcCCC-cEEEEeccCCCCceEEEEcCccccCCceEEecc--
Confidence 99999999999999999988877721 55544 8999999998 788888 789999999994 332 2222211
Q ss_pred cCcCEEEEEEcCCCCEEEE-EeCCcEEEEEe
Q psy8448 324 EGGDFLCCTTSPRGEWIYC-VGEDMVLVVRL 353 (482)
Q Consensus 324 ~~~~v~~~~~~~~g~~l~~-~~~dg~i~iw~ 353 (482)
+...+.+++|+|++++|++ |+.||.|++|+
T Consensus 266 ~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d 296 (402)
T 2aq5_A 266 TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFE 296 (402)
T ss_dssp CCSSCEEEEEETTTTEEEEEETTCSCEEEEE
T ss_pred CCCceeEEEEcCCCCEEEEEEcCCCeEEEEE
Confidence 2567899999999999975 55799999444
No 92
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-35 Score=278.49 Aligned_cols=276 Identities=12% Similarity=0.151 Sum_probs=204.6
Q ss_pred CCCceeecc--CCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccc
Q psy8448 65 PPGTTIDLF--RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQA 142 (482)
Q Consensus 65 ~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 142 (482)
|+|..++.. ++.+.+|+...... .....+.+|...|++++|+|++++|++|+.||.|++||+.+++. ...
T Consensus 21 ~~g~~l~~~~~d~~i~iw~~~~~~~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~-----~~~ 92 (377)
T 3dwl_C 21 SQRTEFVTTTATNQVELYEQDGNGW---KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT-----WKQ 92 (377)
T ss_dssp SSSSEEECCCSSSCBCEEEEETTEE---EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C-----CCC
T ss_pred CCCCEEEEecCCCEEEEEEccCCce---EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc-----eee
Confidence 344444333 67788888764321 12223348999999999999999999999999999999998761 111
Q ss_pred ccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeE---eEEeecccCCCeEEEEEccCCCEEEEEECCCeEEE
Q psy8448 143 QDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQC---LRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRI 219 (482)
Q Consensus 143 ~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i 219 (482)
...+.+|...|.+++|+|++++|++++.|+.|++||+++++. ...+...|...|.+++|+|++++|++++.|+.|++
T Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~i 172 (377)
T 3dwl_C 93 TLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYV 172 (377)
T ss_dssp EEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEE
T ss_pred eeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEE
Confidence 223344788999999999999999999999999999988873 66664349999999999999999999999999999
Q ss_pred EeCC------------------CCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCce----eeeeeccC
Q psy8448 220 HGLK------------------SGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTEC----TSTFKSLG 277 (482)
Q Consensus 220 ~d~~------------------~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~ 277 (482)
||++ .++++..+ +|...|.+++|+|++++|++++.||.|++||+++++. +..+.
T Consensus 173 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--- 248 (377)
T 3dwl_C 173 LSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVK--- 248 (377)
T ss_dssp EEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEE---
T ss_pred EEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeec---
Confidence 9985 34456666 8999999999999999999999999999999999887 55555
Q ss_pred CCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-Cc--E-------------------------E---------EEecC
Q psy8448 278 ASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQ--I-------------------------V---------RSLSS 320 (482)
Q Consensus 278 ~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~--~-------------------------~---------~~~~~ 320 (482)
.|..+|.+++|+|++ .++++++.++.+ +|+.. +. . . ..+..
T Consensus 249 ~~~~~v~~~~~s~~~-~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (377)
T 3dwl_C 249 LSQLPLRSLLWANES-AIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRN 326 (377)
T ss_dssp CSSSCEEEEEEEETT-EEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC---------------
T ss_pred CCCCceEEEEEcCCC-CEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccc
Confidence 888999999999998 788877766655 66653 11 0 0 00110
Q ss_pred -------------CcccCcCEEEEEEcCCC-C---EEEEEeCCcEEEEEee
Q psy8448 321 -------------GKREGGDFLCCTTSPRG-E---WIYCVGEDMVLVVRLI 354 (482)
Q Consensus 321 -------------~~~~~~~v~~~~~~~~g-~---~l~~~~~dg~i~iw~~ 354 (482)
...|...|+++++.+.. . .|++++.||.|++|++
T Consensus 327 ~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 327 MDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ----------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred hhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 11257889999976543 3 6999999999998864
No 93
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=7.2e-35 Score=270.80 Aligned_cols=265 Identities=15% Similarity=0.283 Sum_probs=215.4
Q ss_pred CCccccccccccccccccceeeecCCCCcEEEEEEcCC---CCEEEEEeCCCeEEEEecCCCc-eeeccccccccccccc
Q psy8448 74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPD---GQYLITGSVDGFIEVWNFTTGK-IRKDLKYQAQDNFMLM 149 (482)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~---~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~h 149 (482)
++.+.+|+...... ......+|...|++++|+|+ +++|++|+.||.|++||+.+++ .... +.+|
T Consensus 43 d~~v~iw~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------~~~~ 110 (357)
T 3i2n_A 43 TGVIQLYEIQHGDL----KLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYS--------VKGH 110 (357)
T ss_dssp CEEEEEEEECSSSE----EEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEE--------ECCC
T ss_pred CcEEEEEeCCCCcc----cceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEE--------EEec
Confidence 67788888764432 22223479999999999998 7999999999999999999876 3333 3356
Q ss_pred cccEEEEE------EcCCCCEEEEEeCCCcEEEEEcCCCe-EeEEeecccC----CCeEEEE----EccCCCEEEEEECC
Q psy8448 150 EEAVMSLA------YSRDSEMLASGSQSGKVKIWKIATGQ-CLRKLEKAHS----LGVTCIQ----FSRDNSQILTASFD 214 (482)
Q Consensus 150 ~~~i~~l~------~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~----~~v~~i~----~~~~~~~l~~~~~d 214 (482)
...|.+++ |+|++++|++++.||.|++||+.+++ ....+ ..+. ..+.+++ |+|++.++++++.|
T Consensus 111 ~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d 189 (357)
T 3i2n_A 111 KEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANM-EPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN 189 (357)
T ss_dssp SSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEE-CCCTTSCCCCEEEEEEECCCC-CCCEEEEEETT
T ss_pred ccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceec-cccCCCCCCceEEEEEEeccCCCCCEEEEEccC
Confidence 88999995 46889999999999999999999887 56666 3333 3789998 67899999999999
Q ss_pred CeEEEEeCCCCceEEEeeccccceeEEEEcC---CCCEEEEEeCCCcEEEEECCCCceeeeee--ccCCCccceeEEEEc
Q psy8448 215 TYVRIHGLKSGKMLKEFRGHSSFVNDITFTA---DGHSVLSASSDGTVKMWNLKTTECTSTFK--SLGASDIAVNSIHLL 289 (482)
Q Consensus 215 g~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~v~~i~~~ 289 (482)
|.|++||+++++.... ..|...|.+++|+| ++++|++++.||.|++||+++++....+. ....|...|.+++|+
T Consensus 190 ~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 268 (357)
T 3i2n_A 190 GDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHL 268 (357)
T ss_dssp SEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEE
T ss_pred CeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEEC
Confidence 9999999999887554 55889999999999 99999999999999999998866544432 223788899999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEcC-C-------------------cEEEEecCCcccCcCEEEEEEcCCCCEEE-EEeCCcE
Q psy8448 290 PKNTEHFVVCNKTNTVVIMNMQ-G-------------------QIVRSLSSGKREGGDFLCCTTSPRGEWIY-CVGEDMV 348 (482)
Q Consensus 290 ~~~~~~l~~~~~d~~i~i~d~~-~-------------------~~~~~~~~~~~~~~~v~~~~~~~~g~~l~-~~~~dg~ 348 (482)
|++..++++++.||.|++||++ + +.+..+..+ ...|.+++|+|++++|+ +++.||.
T Consensus 269 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~s~~~d~~ 345 (357)
T 3i2n_A 269 PQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLS---TQPISSLDWSPDKRGLCVCSSFDQT 345 (357)
T ss_dssp TTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECC---SSCEEEEEECSSSTTEEEEEETTSE
T ss_pred CCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccC---CCCeeEEEEcCCCCeEEEEecCCCc
Confidence 9984489999999999999984 2 234444443 78899999999999998 8999999
Q ss_pred EEEEeeh
Q psy8448 349 LVVRLIQ 355 (482)
Q Consensus 349 i~iw~~~ 355 (482)
|++|++.
T Consensus 346 i~iw~~~ 352 (357)
T 3i2n_A 346 VRVLIVT 352 (357)
T ss_dssp EEEEEEC
T ss_pred EEEEECC
Confidence 9977765
No 94
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-34 Score=268.32 Aligned_cols=250 Identities=20% Similarity=0.233 Sum_probs=206.1
Q ss_pred ccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcC--CCeEeEEeecccCCCeEEEEEccC--CCEEEEEECCCeEEEE
Q psy8448 145 NFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIA--TGQCLRKLEKAHSLGVTCIQFSRD--NSQILTASFDTYVRIH 220 (482)
Q Consensus 145 ~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~dg~i~i~ 220 (482)
.+.+|...|++++|+|++++|++++.||.|++||+. +++....+ ..|...|.+++|+++ +.+|++++.||.|++|
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw 84 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 84 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEe-cCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEE
Confidence 455689999999999999999999999999999998 45566666 689999999999976 8999999999999999
Q ss_pred eCCCCc--eEEEeeccccceeEEEEcCC--CCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCC-----
Q psy8448 221 GLKSGK--MLKEFRGHSSFVNDITFTAD--GHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPK----- 291 (482)
Q Consensus 221 d~~~~~--~~~~~~~~~~~i~~l~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~----- 291 (482)
|+++++ .+..+..|...|.+++|+|+ +.+|++++.|+.|++||++++....... ...|...|.+++|+|.
T Consensus 85 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 85 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII-IDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEE-EECCTTCEEEEEECCCC----
T ss_pred EcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEE-ecCCCCceEEEEEcCcccccc
Confidence 999987 67778889999999999999 9999999999999999999874332221 1278889999999994
Q ss_pred -------CCCEEEEEeCCCeEEEEEcC-Cc----EEEEecCCcccCcCEEEEEEcCC---CCEEEEEeCCcEEEEEeehh
Q psy8448 292 -------NTEHFVVCNKTNTVVIMNMQ-GQ----IVRSLSSGKREGGDFLCCTTSPR---GEWIYCVGEDMVLVVRLIQQ 356 (482)
Q Consensus 292 -------~~~~l~~~~~d~~i~i~d~~-~~----~~~~~~~~~~~~~~v~~~~~~~~---g~~l~~~~~dg~i~iw~~~~ 356 (482)
...++++++.|+.|++||++ +. ....+.. |...|.+++|+|+ +++|++++.||.|++|++
T Consensus 164 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~-- 238 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG---HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ-- 238 (379)
T ss_dssp ------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECC---CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE--
T ss_pred ccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEec---ccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeC--
Confidence 23899999999999999993 33 2334443 3788999999999 899999999999995554
Q ss_pred hhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhh
Q psy8448 357 YLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSL 436 (482)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (482)
.++..... ..
T Consensus 239 ----------------~~~~~~~~--------------------------~~---------------------------- 248 (379)
T 3jrp_A 239 ----------------DNEQGPWK--------------------------KT---------------------------- 248 (379)
T ss_dssp ----------------SSTTSCCE--------------------------EE----------------------------
T ss_pred ----------------CCCCccce--------------------------ee----------------------------
Confidence 33300000 00
Q ss_pred ccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448 437 LRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS 482 (482)
Q Consensus 437 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW 482 (482)
.. ....|...|++++|+|++++|++++.||.|++|
T Consensus 249 -~~----------~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw 283 (379)
T 3jrp_A 249 -LL----------KEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 283 (379)
T ss_dssp -ES----------SSSCCSSCEEEEEECSSSCCEEEEESSSSEEEE
T ss_pred -ee----------ccccCCCcEEEEEEcCCCCEEEEecCCCcEEEE
Confidence 11 334588889999999999999999999999998
No 95
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.1e-33 Score=268.75 Aligned_cols=262 Identities=19% Similarity=0.290 Sum_probs=216.5
Q ss_pred cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccccccccccccc
Q psy8448 73 FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEA 152 (482)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~ 152 (482)
.++.+.+|+.........+ ...+|...|++++|+|+|++||+|+.||.|+|||+.+++.+..+. +|...
T Consensus 123 ld~tV~lWd~~tg~~~~~~---~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~--------~h~~~ 191 (420)
T 4gga_A 123 LDNSVYLWSASSGDILQLL---QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT--------SHSAR 191 (420)
T ss_dssp ETTEEEEEETTTCCEEEEE---ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC--------CCSSC
T ss_pred eCCEEEEEECCCCCEEEEE---EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEe--------CCCCc
Confidence 3677888887654322111 124788999999999999999999999999999999988765544 35788
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCc----eE
Q psy8448 153 VMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGK----ML 228 (482)
Q Consensus 153 i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~ 228 (482)
+.+++++ +..|++|+.|+.+++||.............|...+..+.|+|++.++++++.|+.+++|+..+++ .+
T Consensus 192 v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~ 269 (420)
T 4gga_A 192 VGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL 269 (420)
T ss_dssp EEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCS
T ss_pred eEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceee
Confidence 9888875 67999999999999999887654433337899999999999999999999999999999998775 34
Q ss_pred EEeeccccceeEEEEcCCCC-EEEEE--eCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEe--CCC
Q psy8448 229 KEFRGHSSFVNDITFTADGH-SVLSA--SSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCN--KTN 303 (482)
Q Consensus 229 ~~~~~~~~~i~~l~~~~~~~-~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~--~d~ 303 (482)
.....|...|.+++|+|++. .++++ +.|+.|++||+.++++...+. ....+.++.|+|++ ..+++++ .|+
T Consensus 270 ~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~----~~~~v~~~~~~~~~-~~lv~~sg~~d~ 344 (420)
T 4gga_A 270 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD----AHSQVCSILWSPHY-KELISGHGFAQN 344 (420)
T ss_dssp EEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE----CSSCEEEEEEETTT-TEEEEEECTTTC
T ss_pred eeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec----cccceeeeeecCCC-CeEEEEEecCCC
Confidence 56678999999999999654 45543 479999999999999888874 45678999999998 5555544 789
Q ss_pred eEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448 304 TVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ 355 (482)
Q Consensus 304 ~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~ 355 (482)
.|++||+ +++.+..+..| ...|++++|+|||++|++|+.|++|+||++.
T Consensus 345 ~I~iwd~~~~~~v~~l~gH---~~~V~~l~~spdg~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 345 QLVIWKYPTMAKVAELKGH---TSRVLSLTMSPDGATVASAAADETLRLWRCF 394 (420)
T ss_dssp CEEEEETTTCCEEEEECCC---SSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred EEEEEECCCCcEEEEEcCC---CCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 9999999 68888888765 7899999999999999999999999988764
No 96
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.5e-34 Score=273.24 Aligned_cols=276 Identities=16% Similarity=0.213 Sum_probs=221.3
Q ss_pred cCCccccccccccccccccceeeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccc
Q psy8448 73 FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSP-DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEE 151 (482)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~ 151 (482)
.++.+.+|+........... ..+.+|.+.|++++|+| ++++|++|+.||.|+|||+.++....... .....+.+|..
T Consensus 55 ~~g~i~v~~~~~~~~~~~~~-~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~-~~~~~~~~h~~ 132 (402)
T 2aq5_A 55 GGGAFLVLPLGKTGRVDKNV-PLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLR-EPVITLEGHTK 132 (402)
T ss_dssp SSCCEEEEETTCCEECCTTC-CCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBC-SCSEEEECCSS
T ss_pred CCCEEEEEECccCCCCCCCC-ceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccC-CceEEecCCCC
Confidence 46788889875443222222 23458999999999999 99999999999999999999875432211 22334566889
Q ss_pred cEEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCeEeEEee-cccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEE
Q psy8448 152 AVMSLAYSRDS-EMLASGSQSGKVKIWKIATGQCLRKLE-KAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLK 229 (482)
Q Consensus 152 ~i~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 229 (482)
.|.+++|+|++ ++|++++.||.|++||+.+++.+..+. ..|...|.+++|+|++.+|++++.|+.|++||+++++.+.
T Consensus 133 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 212 (402)
T 2aq5_A 133 RVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVA 212 (402)
T ss_dssp CEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE
T ss_pred eEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceee
Confidence 99999999998 699999999999999999999888874 5789999999999999999999999999999999999998
Q ss_pred Ee-eccccc-eeEEEEcCCCCEEEEE---eCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEE-EEEeCCC
Q psy8448 230 EF-RGHSSF-VNDITFTADGHSVLSA---SSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHF-VVCNKTN 303 (482)
Q Consensus 230 ~~-~~~~~~-i~~l~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l-~~~~~d~ 303 (482)
.+ ..|.+. +.++.|+|++++|+++ +.|+.|++||+++++........ .+...+.+++|+|++ ..+ ++++.|+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~-~~l~~~g~~dg 290 (402)
T 2aq5_A 213 EKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DTSSGVLLPFFDPDT-NIVYLCGKGDS 290 (402)
T ss_dssp EEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CCCSSCEEEEEETTT-TEEEEEETTCS
T ss_pred eeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-cCCCceeEEEEcCCC-CEEEEEEcCCC
Confidence 88 678776 8999999999999998 78999999999987642222211 456789999999999 555 5666899
Q ss_pred eEEEEEcC-CcE-EEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448 304 TVVIMNMQ-GQI-VRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ 355 (482)
Q Consensus 304 ~i~i~d~~-~~~-~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~ 355 (482)
.|++||+. ++. +..+..+. +...+.+++|+|++.++++ .++.+++|++.
T Consensus 291 ~i~i~d~~~~~~~~~~l~~~~-~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~ 341 (402)
T 2aq5_A 291 SIRYFEITSEAPFLHYLSMFS-SKESQRGMGYMPKRGLEVN--KCEIARFYKLH 341 (402)
T ss_dssp CEEEEEECSSTTCEEEEEEEC-CSSCCSEEEECCGGGSCGG--GTEEEEEEEEE
T ss_pred eEEEEEecCCCcceEeecccc-cCCcccceEEeccccccee--cceeEEEEEcC
Confidence 99999994 442 44444332 3678999999999998764 57799977765
No 97
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-34 Score=273.95 Aligned_cols=250 Identities=12% Similarity=0.107 Sum_probs=206.0
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCc---eeeccccccc---------------------------------
Q psy8448 100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGK---IRKDLKYQAQ--------------------------------- 143 (482)
Q Consensus 100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~---~~~~~~~~~~--------------------------------- 143 (482)
..++.+++|+|+|++|+++. ++.|++||+.+++ .+..+.....
T Consensus 4 ~~p~~~v~~s~dg~~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEEE-TTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 35789999999999777664 7899999999998 4444332110
Q ss_pred -------------cccccccccEEEEEEcCCCCEE-EEEeCCCcEEEEEcC--CCeEeEEeec-ccCCCeEEEEEccCCC
Q psy8448 144 -------------DNFMLMEEAVMSLAYSRDSEML-ASGSQSGKVKIWKIA--TGQCLRKLEK-AHSLGVTCIQFSRDNS 206 (482)
Q Consensus 144 -------------~~~~~h~~~i~~l~~~~~~~~l-~~~~~dg~i~iwd~~--~~~~~~~~~~-~~~~~v~~i~~~~~~~ 206 (482)
....+|...|.+++|+|++++| ++++.||.|++||+. +++.+..+.. .+...|.+++|+|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 0112455689999999999996 888899999999998 7877777632 5678899999999999
Q ss_pred EEEEEECCCeEEEEeCCCCceEE----EeeccccceeEEEEcCC---CCEEEEEeCCCcEEEEECCCCceeeeeeccCCC
Q psy8448 207 QILTASFDTYVRIHGLKSGKMLK----EFRGHSSFVNDITFTAD---GHSVLSASSDGTVKMWNLKTTECTSTFKSLGAS 279 (482)
Q Consensus 207 ~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~i~~l~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 279 (482)
+|++++.+|.|++|++.+++... .+.+|...|.+++|+|+ +++|++++.|+.|++||+++++.+..+.. +|
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~--~h 240 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLF--GH 240 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECC--CC
T ss_pred EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeec--CC
Confidence 99999999999999998877554 77889999999999999 99999999999999999999887766322 78
Q ss_pred ccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCc----------------------ccCcCEEEEEEcCC
Q psy8448 280 DIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGK----------------------REGGDFLCCTTSPR 336 (482)
Q Consensus 280 ~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~----------------------~~~~~v~~~~~~~~ 336 (482)
...|.+++|+ ++ .+|++++.|+.|++||+ +++.+..+..+. .....+.+++|+|+
T Consensus 241 ~~~v~~~~~s-d~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 318 (450)
T 2vdu_B 241 KHFVSSICCG-KD-YLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKN 318 (450)
T ss_dssp SSCEEEEEEC-ST-TEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSS
T ss_pred CCceEEEEEC-CC-CEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCC
Confidence 8999999999 77 89999999999999999 677777665321 12457899999999
Q ss_pred CCEEEEEe-CCcEEEEEee
Q psy8448 337 GEWIYCVG-EDMVLVVRLI 354 (482)
Q Consensus 337 g~~l~~~~-~dg~i~iw~~ 354 (482)
+++|++++ .|+.|++|++
T Consensus 319 ~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 319 LPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp SSEEEEEETTCSEEEEEEE
T ss_pred CCEEEEEECCCCeEEEEEe
Confidence 99999999 8999996654
No 98
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-35 Score=281.65 Aligned_cols=288 Identities=14% Similarity=0.176 Sum_probs=226.4
Q ss_pred CC-CCceeec--cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecC---CCceeec
Q psy8448 64 LP-PGTTIDL--FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFT---TGKIRKD 137 (482)
Q Consensus 64 ~~-~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~---~~~~~~~ 137 (482)
.| ++..++. .++.+.+|+................+|...|++++|+|++++|++|+.||.|++||+. +++....
T Consensus 72 s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 151 (437)
T 3gre_A 72 SPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKF 151 (437)
T ss_dssp ECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEE
T ss_pred CCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeec
Confidence 35 5555544 3677889987653222212222333799999999999999999999999999999995 5555443
Q ss_pred cccccccccc--c--ccccEEEEE--EcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecc-cCCCeEEEEEccCCCEEEE
Q psy8448 138 LKYQAQDNFM--L--MEEAVMSLA--YSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKA-HSLGVTCIQFSRDNSQILT 210 (482)
Q Consensus 138 ~~~~~~~~~~--~--h~~~i~~l~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~ 210 (482)
...+....+. . +...+.++. +++++++|++++.||.|++||+++++.+..+... |...|.+++|+|++.+|++
T Consensus 152 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 231 (437)
T 3gre_A 152 LNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLIL 231 (437)
T ss_dssp EEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEE
T ss_pred cccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEE
Confidence 3333221111 1 456788888 6688999999999999999999999999888432 8899999999999999999
Q ss_pred EECCCeEEEEeCCCCceEEEee-ccccceeEEEEcC----CCCEEEEEeCCCcEEEEECCCCceeeeeecc---------
Q psy8448 211 ASFDTYVRIHGLKSGKMLKEFR-GHSSFVNDITFTA----DGHSVLSASSDGTVKMWNLKTTECTSTFKSL--------- 276 (482)
Q Consensus 211 ~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~l~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------- 276 (482)
|+.||.|++||+++++++..+. .|...|.+++|+| ++.+|++++.||.|++||++++++...+...
T Consensus 232 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 311 (437)
T 3gre_A 232 GTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHF 311 (437)
T ss_dssp EETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGG
T ss_pred EcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCcccee
Confidence 9999999999999999998886 7888999996665 6779999999999999999999887776522
Q ss_pred ------------CC--CccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCC--------------------
Q psy8448 277 ------------GA--SDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSG-------------------- 321 (482)
Q Consensus 277 ------------~~--~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~-------------------- 321 (482)
.+ |...|.+++|+ ++ .++++++.|+.|++||+ +++....+..+
T Consensus 312 ~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (437)
T 3gre_A 312 LPIEKGLEELNFCGIRSLNALSTISVS-ND-KILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLL 389 (437)
T ss_dssp SCBCSSGGGCCCCCCCSGGGGCCEEEE-TT-EEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEE
T ss_pred cccccccccceecccccCCceEEEEEC-Cc-eEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEE
Confidence 11 66779999999 55 79999999999999999 55555555432
Q ss_pred --------------cccCcCEEEEEEcCC--CCEEEEEeCCcEEEEEe
Q psy8448 322 --------------KREGGDFLCCTTSPR--GEWIYCVGEDMVLVVRL 353 (482)
Q Consensus 322 --------------~~~~~~v~~~~~~~~--g~~l~~~~~dg~i~iw~ 353 (482)
..|...|.+++|+++ +.+|++|+.||.|+||.
T Consensus 390 ~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 390 RKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 115788999999998 78999999999999773
No 99
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=5.8e-34 Score=271.22 Aligned_cols=258 Identities=16% Similarity=0.239 Sum_probs=214.1
Q ss_pred eeecCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEecCCCceeec--cccccccccccccccEEEEEEcCCCC-EEEEEe
Q psy8448 94 QIKFGSKSHVECARFSPD-GQYLITGSVDGFIEVWNFTTGKIRKD--LKYQAQDNFMLMEEAVMSLAYSRDSE-MLASGS 169 (482)
Q Consensus 94 ~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~v~iwd~~~~~~~~~--~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~~~~ 169 (482)
....+|.+.|++++|+|+ +.+||+++.||.|++|++.+...... -.......+.+|...|++++|+|++. +|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 445589999999999997 78999999999999999976211100 01222334556789999999999988 999999
Q ss_pred CCCcEEEEEcCCCeE-------eEEeecccCCCeEEEEEcc-CCCEEEEEECCCeEEEEeCCCC---ceEEEeeccccce
Q psy8448 170 QSGKVKIWKIATGQC-------LRKLEKAHSLGVTCIQFSR-DNSQILTASFDTYVRIHGLKSG---KMLKEFRGHSSFV 238 (482)
Q Consensus 170 ~dg~i~iwd~~~~~~-------~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i 238 (482)
.||.|++||+.++.. ...+ ..|...|.+++|+| ++.+|++++.||.|++||++++ +.+..+..|...|
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 280 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIF-TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 280 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEE-CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred CCCeEEEEeCCCCCCCCceeccceee-cCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence 999999999987322 3344 57899999999999 6788999999999999999987 5777888899999
Q ss_pred eEEEEcCCCC-EEEEEeCCCcEEEEECCC-CceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCC----
Q psy8448 239 NDITFTADGH-SVLSASSDGTVKMWNLKT-TECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQG---- 312 (482)
Q Consensus 239 ~~l~~~~~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~---- 312 (482)
++++|+|++. +|++|+.||.|++||+++ ..++..+. .|...|.+++|+|++..++++++.|+.|++||+..
T Consensus 281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~---~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~ 357 (430)
T 2xyi_A 281 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE---SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 357 (430)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE---CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCC
T ss_pred EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee---cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccc
Confidence 9999999887 688999999999999998 45566666 78899999999999977899999999999999943
Q ss_pred -----------cEEEEecCCcccCcCEEEEEEcCCCC-EEEEEeCCcEEEEEeehhhh
Q psy8448 313 -----------QIVRSLSSGKREGGDFLCCTTSPRGE-WIYCVGEDMVLVVRLIQQYL 358 (482)
Q Consensus 313 -----------~~~~~~~~~~~~~~~v~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~ 358 (482)
..+.....+ ...|.+++|+|+++ +|++++.||.|+||++....
T Consensus 358 ~~~~~~~~~~~~~~~~~~~h---~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 358 QSTEDAEDGPPELLFIHGGH---TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 412 (430)
T ss_dssp CCHHHHHHCCTTEEEECCCC---SSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred cCccccccCCcceEEEcCCC---CCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence 444444443 77899999999999 89999999999999887543
No 100
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-34 Score=294.71 Aligned_cols=255 Identities=20% Similarity=0.230 Sum_probs=208.7
Q ss_pred eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCC--CCEEEEEeCC
Q psy8448 94 QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRD--SEMLASGSQS 171 (482)
Q Consensus 94 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~--~~~l~~~~~d 171 (482)
.++.+|.+.|++++|+|++++|++|+.||.|+|||+.++... ....+.+|..+|++++|+|+ +++|++|+.|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~------~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D 76 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK------LIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 76 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEE------EEEEECCCSSCEEEEEECCTTSCSEEEEEETT
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCc------cceeccCCcCceEEEEecCCCCCCEEEEEeCC
Confidence 355699999999999999999999999999999998744321 12234457899999999987 9999999999
Q ss_pred CcEEEEEcCCCe--EeEEeecccCCCeEEEEEccC--CCEEEEEECCCeEEEEeCCCCc--eEEEeeccccceeEEEEcC
Q psy8448 172 GKVKIWKIATGQ--CLRKLEKAHSLGVTCIQFSRD--NSQILTASFDTYVRIHGLKSGK--MLKEFRGHSSFVNDITFTA 245 (482)
Q Consensus 172 g~i~iwd~~~~~--~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~l~~~~ 245 (482)
|.|++||+.+++ ....+ ..|...|.+++|+|+ +..+++|+.||.|++||++++. ....+.+|...|.+++|+|
T Consensus 77 g~I~vwd~~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p 155 (753)
T 3jro_A 77 GKVLIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP 155 (753)
T ss_dssp SCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECC
T ss_pred CeEEEEECCCCcccccccc-cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecC
Confidence 999999999886 55555 679999999999998 9999999999999999998873 3456678999999999999
Q ss_pred -------------CCCEEEEEeCCCcEEEEECCCCcee-eeeeccCCCccceeEEEEcCCC--CCEEEEEeCCCeEEEEE
Q psy8448 246 -------------DGHSVLSASSDGTVKMWNLKTTECT-STFKSLGASDIAVNSIHLLPKN--TEHFVVCNKTNTVVIMN 309 (482)
Q Consensus 246 -------------~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~v~~i~~~~~~--~~~l~~~~~d~~i~i~d 309 (482)
++..+++++.||.|++||++++... ........|..+|.+++|+|++ +.++++++.||.|++||
T Consensus 156 ~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp CC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred cccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 5899999999999999999887422 1222233889999999999993 38999999999999999
Q ss_pred cCCc---EEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448 310 MQGQ---IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ 355 (482)
Q Consensus 310 ~~~~---~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~ 355 (482)
+... ..........+...|.+++|+|+|++|++|+.||.|++|++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp ESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred CCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence 9432 122223333357889999999999999999999999977655
No 101
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.4e-34 Score=267.17 Aligned_cols=252 Identities=12% Similarity=0.119 Sum_probs=197.5
Q ss_pred ecCCCCcEEEEEEcCCCCEEEEEe-----------CCCeEEEEecCCCceeecc-ccccccccccccccEEEEEEcCCCC
Q psy8448 96 KFGSKSHVECARFSPDGQYLITGS-----------VDGFIEVWNFTTGKIRKDL-KYQAQDNFMLMEEAVMSLAYSRDSE 163 (482)
Q Consensus 96 ~~~h~~~v~~~~~s~~~~~l~s~~-----------~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~h~~~i~~l~~~~~~~ 163 (482)
+.+|...|.+++++ ++.+++|+ .|+.+++|++.+....... ..........++..+.+++|+|||+
T Consensus 69 l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~ 146 (365)
T 4h5i_A 69 LEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGT 146 (365)
T ss_dssp CCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSS
T ss_pred ccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCC
Confidence 45888899988775 55677654 4678999998765432211 1111112233456789999999999
Q ss_pred EEEEEe--CCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEE--Eeecccccee
Q psy8448 164 MLASGS--QSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLK--EFRGHSSFVN 239 (482)
Q Consensus 164 ~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~i~ 239 (482)
++++++ .|++|++||+++++.+..+. |...|.+++|+|+|+++++++. +.+.+|+..+++.+. ....|...|.
T Consensus 147 ~la~as~~~d~~i~iwd~~~~~~~~~~~--~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~ 223 (365)
T 4h5i_A 147 VAAIASSKVPAIMRIIDPSDLTEKFEIE--TRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLS 223 (365)
T ss_dssp CEEEEESCSSCEEEEEETTTTEEEEEEE--CSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEE
T ss_pred EEEEEECCCCCEEEEeECCCCcEEEEeC--CCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEE
Confidence 987654 68999999999999988873 7788999999999999999984 556677777776654 3456888999
Q ss_pred EEEEcCCCCEEEEEeCCC----cEEEEECCCCceee-eeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCc
Q psy8448 240 DITFTADGHSVLSASSDG----TVKMWNLKTTECTS-TFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQ 313 (482)
Q Consensus 240 ~l~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~ 313 (482)
+++|+|+++.+++++.|+ .+++|++....... .......|..+|++++|+|++ .+|++|+.|+.|+|||+ +++
T Consensus 224 ~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg-~~lasgs~D~~V~iwd~~~~~ 302 (365)
T 4h5i_A 224 KINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKG-ELAVLASNDNSIALVKLKDLS 302 (365)
T ss_dssp EEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTS-CEEEEEETTSCEEEEETTTTE
T ss_pred EEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCC-CceEEEcCCCEEEEEECCCCc
Confidence 999999999999999887 58889987765322 122233788899999999999 89999999999999999 677
Q ss_pred EEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448 314 IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ 355 (482)
Q Consensus 314 ~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~ 355 (482)
.+..+... |...|++++|+|||++|++|+.|++|+||+++
T Consensus 303 ~~~~~~~g--H~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 303 MSKIFKQA--HSFAITEVTISPDSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp EEEEETTS--SSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred EEEEecCc--ccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 77776443 37899999999999999999999999988775
No 102
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-35 Score=275.79 Aligned_cols=262 Identities=10% Similarity=0.007 Sum_probs=206.0
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy8448 98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIW 177 (482)
Q Consensus 98 ~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iw 177 (482)
.-...|.+++|+|||+++|+++.|++|+ |...++. + .+|...|.+++|+|+| .++.+.+|
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~---l--------~gh~~~v~~V~FsPdg-------~~~~~~~~ 72 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD---I--------NCNSKNLFHVKEFPLE-------FENKLDFE 72 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC---C--------SSBGGGTEEEEEECCC-------CCCTTTTS
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccce---e--------cCCCccEEEEEECCCC-------CcceEEEE
Confidence 3467899999999999999999999999 6444332 2 3578999999999998 45555555
Q ss_pred EcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeecccc-----ceeEEEEcCCCCEEEE
Q psy8448 178 KIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSS-----FVNDITFTADGHSVLS 252 (482)
Q Consensus 178 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~i~~l~~~~~~~~l~~ 252 (482)
+. +....+...|...|.+++|+|+|++|++++.||.|++||.+. .+..+. |.. .+.+++|+|||++|++
T Consensus 73 ~~---~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAs 146 (588)
T 2j04_A 73 LA---QQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVV 146 (588)
T ss_dssp CC---CSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEE
T ss_pred eC---CCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEE
Confidence 53 322233235688899999999999999999999999999644 666666 665 4999999999999999
Q ss_pred EeCCCcEEEEECCCCce-------eeeeec-cCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcE----EEEecC
Q psy8448 253 ASSDGTVKMWNLKTTEC-------TSTFKS-LGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQI----VRSLSS 320 (482)
Q Consensus 253 ~~~dg~i~i~d~~~~~~-------~~~~~~-~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~----~~~~~~ 320 (482)
|+.||+|++||+.++.. +.++.. ..+|...|.+++|+|++ +++++.|+.+++||+.++. ...+..
T Consensus 147 gs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~ 223 (588)
T 2j04_A 147 GNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQN 223 (588)
T ss_dssp EETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEEC
T ss_pred EcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecc
Confidence 99999999999998753 344421 12677899999999986 8899999999999995433 234432
Q ss_pred CcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchh
Q psy8448 321 GKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVL 400 (482)
Q Consensus 321 ~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (482)
+ |...|.+++|+ |+.|++++ ++.|+ +|+..++
T Consensus 224 ~--h~~~V~svaFs--g~~LASa~-~~tIk------------------LWd~~~~------------------------- 255 (588)
T 2j04_A 224 A--SRRKITDLKIV--DYKVVLTC-PGYVH------------------KIDLKNY------------------------- 255 (588)
T ss_dssp C--CSSCCCCEEEE--TTEEEEEC-SSEEE------------------EEETTTT-------------------------
T ss_pred c--ccCcEEEEEEE--CCEEEEEe-CCeEE------------------EEECCCC-------------------------
Confidence 2 26789999999 68999887 69999 5565555
Q ss_pred ccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccc--cCCcceEEEEecCce
Q psy8448 401 KSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTH--HPHQNLLGTYSEDGL 478 (482)
Q Consensus 401 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--sp~~~~l~s~~~Dg~ 478 (482)
.+ .. ...+|.+.|.+++| +||++.|+++++||+
T Consensus 256 ------~~-----------------------------~~----------~~~gh~~~V~~va~~~s~d~~~La~a~edG~ 290 (588)
T 2j04_A 256 ------SI-----------------------------SS----------LKTGSLENFHIIPLNHEKESTILLMSNKTSY 290 (588)
T ss_dssp ------EE-----------------------------EE----------EECSCCSCCCEEEETTCSSCEEEEECSSCEE
T ss_pred ------eE-----------------------------EE----------EEcCCCceEEEEEeeeCCCCCEEEEEcCCCC
Confidence 11 11 22279999999999 999999999999999
Q ss_pred eecC
Q psy8448 479 LRFS 482 (482)
Q Consensus 479 i~iW 482 (482)
++|
T Consensus 291 -klw 293 (588)
T 2j04_A 291 -KVL 293 (588)
T ss_dssp -EEE
T ss_pred -EEE
Confidence 887
No 103
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=6.4e-35 Score=278.39 Aligned_cols=268 Identities=18% Similarity=0.242 Sum_probs=204.9
Q ss_pred cCCccccccccccccccccceeeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccc
Q psy8448 73 FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSP-DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEE 151 (482)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~ 151 (482)
.+|.+.+|+......+... ...+|.+.|++|+|+| ++++|++|+.||+|++||++++........+ .+..
T Consensus 140 ~dg~i~lWd~~~~~~~~~~---~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~------~~~~ 210 (435)
T 4e54_B 140 KGGDIMLWNFGIKDKPTFI---KGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSD------TINI 210 (435)
T ss_dssp TTSCEEEECSSCCSCCEEE---CCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCS------SCSC
T ss_pred CCCEEEEEECCCCCceeEE---EccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccC------CCCc
Confidence 4788999987654432221 2348999999999998 7899999999999999999876443222211 1245
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCC-EEEEEECCCeEEEEeCCCCceEEE
Q psy8448 152 AVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNS-QILTASFDTYVRIHGLKSGKMLKE 230 (482)
Q Consensus 152 ~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~ 230 (482)
.+.+++|+|++++|++|+.||.|++||++. +.+..+ ..|...|.+++|+|++. ++++++.|+.|++||+++.+....
T Consensus 211 ~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~-~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~ 288 (435)
T 4e54_B 211 WFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNL-RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKAS 288 (435)
T ss_dssp CCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCS-BCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSC
T ss_pred cEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEE-ecccceEEeeeecCCCceEEEEecCcceeeEEecccccccce
Confidence 688999999999999999999999999864 455556 68999999999999876 678999999999999988765433
Q ss_pred ---eeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccC---CCccceeEEEEcCCCCCEEEEEe----
Q psy8448 231 ---FRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLG---ASDIAVNSIHLLPKNTEHFVVCN---- 300 (482)
Q Consensus 231 ---~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~~l~~~~---- 300 (482)
..+|...|++++|+|++++|++++.||.|++||+++++....+.... .....+....|+|.+ ..++++.
T Consensus 289 ~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~ 367 (435)
T 4e54_B 289 FLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRY-NLIVVGRYPDP 367 (435)
T ss_dssp CSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSS-SCEEEECCCCT
T ss_pred EEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCC-CEEEEEEcCCC
Confidence 35789999999999999999999999999999999988766554211 011123345666666 4444443
Q ss_pred --------CCCeEEEEEc-CCcEEEEecCCcccCcCEEEE-EEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448 301 --------KTNTVVIMNM-QGQIVRSLSSGKREGGDFLCC-TTSPRGEWIYCVGEDMVLVVRLIQ 355 (482)
Q Consensus 301 --------~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~-~~~~~g~~l~~~~~dg~i~iw~~~ 355 (482)
.++.|++||. +++.+..+..++ ...|.++ +|+|+|++|++|+ |+.|+||+++
T Consensus 368 ~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~--~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~ 429 (435)
T 4e54_B 368 NFKSCTPYELRTIDVFDGNSGKMMCQLYDPE--SSGISSLNEFNPMGDTLASAM-GYHILIWSQQ 429 (435)
T ss_dssp TSCCSSTTCCCCEEEECSSSCCEEEEECCSS--CCCCCCEEEECTTSSCEEEEC-SSEEEECCCC
T ss_pred CeEEEEecCCCEEEEEECCCCcEEEEEeCCC--CCcEEEEEEECCCCCEEEEEc-CCcEEEEECC
Confidence 3467999999 678877776543 5667776 6999999999876 7899955543
No 104
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-34 Score=264.48 Aligned_cols=231 Identities=11% Similarity=0.088 Sum_probs=186.5
Q ss_pred EEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcC------
Q psy8448 107 RFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIA------ 180 (482)
Q Consensus 107 ~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~------ 180 (482)
.+.+++++|++|+.||.|++||+.+++.+..+. ...|.++.|+|+ +++++.|++|++|+..
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~----------~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~ 109 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT----------TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITIL 109 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE----------EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe----------cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEe
Confidence 345678899999999999999999998776655 245778888888 9999999999999655
Q ss_pred ---CCeEeEEeecccCCCeEEEEEcc--CCCEEEEEECCCeEEEEeCCCCceEEEee-ccccceeEEEEcCCCCEEEEEe
Q psy8448 181 ---TGQCLRKLEKAHSLGVTCIQFSR--DNSQILTASFDTYVRIHGLKSGKMLKEFR-GHSSFVNDITFTADGHSVLSAS 254 (482)
Q Consensus 181 ---~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~ 254 (482)
+++.+..+...|...|.+++|+| +++++++++.||.|++||+++++...... .+...|.+++|+|++.+|++|+
T Consensus 110 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~ 189 (343)
T 3lrv_A 110 DSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYS 189 (343)
T ss_dssp ETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEEC
T ss_pred ecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEc
Confidence 55556666557778999999999 99999999999999999999999876664 4556899999999999999999
Q ss_pred CCCcEEEEECCCCcee-eeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CcEEEEecCCcccCcCE--EE
Q psy8448 255 SDGTVKMWNLKTTECT-STFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSGKREGGDF--LC 330 (482)
Q Consensus 255 ~dg~i~i~d~~~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~v--~~ 330 (482)
.||.|++||+++++.. ..+.. .|..+|.+++|+|++ .++++++ ++.|++||++ ++.+..+.....+...+ .+
T Consensus 190 ~dg~i~iwd~~~~~~~~~~~~~--~h~~~v~~l~fs~~g-~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 265 (343)
T 3lrv_A 190 PDGILDVYNLSSPDQASSRFPV--DEEAKIKEVKFADNG-YWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVT 265 (343)
T ss_dssp TTSCEEEEESSCTTSCCEECCC--CTTSCEEEEEECTTS-SEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEE
T ss_pred CCCEEEEEECCCCCCCccEEec--cCCCCEEEEEEeCCC-CEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceE
Confidence 9999999999999876 56651 388999999999998 8888888 5599999994 44443333221112223 46
Q ss_pred EEEcCCCCEEEEEeC-CcEEEEEee
Q psy8448 331 CTTSPRGEWIYCVGE-DMVLVVRLI 354 (482)
Q Consensus 331 ~~~~~~g~~l~~~~~-dg~i~iw~~ 354 (482)
++|+|+|++|++++. |+.+++|++
T Consensus 266 ~~~~~~g~~l~~~s~~d~~i~v~~~ 290 (343)
T 3lrv_A 266 YDIDDSGKNMIAYSNESNSLTIYKF 290 (343)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEE
T ss_pred EEECCCCCEEEEecCCCCcEEEEEE
Confidence 999999999999998 999996544
No 105
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=9.7e-34 Score=269.68 Aligned_cols=256 Identities=18% Similarity=0.239 Sum_probs=207.7
Q ss_pred cccccccEEEEEEcCC-CCEEEEEeCCCcEEEEEcCC----------CeEeEEeecccCCCeEEEEEccCCC-EEEEEEC
Q psy8448 146 FMLMEEAVMSLAYSRD-SEMLASGSQSGKVKIWKIAT----------GQCLRKLEKAHSLGVTCIQFSRDNS-QILTASF 213 (482)
Q Consensus 146 ~~~h~~~i~~l~~~~~-~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~ 213 (482)
...|.+.|++++|+|+ +.+|++++.||.|++||+.+ ......+ ..|...|.+++|+|++. +|++|+.
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~ 202 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL-RGHQKEGYGLSWNPNLNGYLLSASD 202 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE-ECCSSCCCCEEECTTSTTEEEEECT
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEe-cCCCCCeEEEEeCCCCCCeEEEEeC
Confidence 4568899999999997 68999999999999999986 4566666 68999999999999988 9999999
Q ss_pred CCeEEEEeCCCCce-------EEEeeccccceeEEEEcC-CCCEEEEEeCCCcEEEEECCCC---ceeeeeeccCCCccc
Q psy8448 214 DTYVRIHGLKSGKM-------LKEFRGHSSFVNDITFTA-DGHSVLSASSDGTVKMWNLKTT---ECTSTFKSLGASDIA 282 (482)
Q Consensus 214 dg~i~i~d~~~~~~-------~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~~ 282 (482)
||.|++||+..+.. ...+.+|...|.+++|+| ++..|++++.||.|++||++++ +....+. .|...
T Consensus 203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~---~~~~~ 279 (430)
T 2xyi_A 203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD---AHTAE 279 (430)
T ss_dssp TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE---CCSSC
T ss_pred CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee---cCCCC
Confidence 99999999987432 456678999999999999 7789999999999999999987 3455554 78899
Q ss_pred eeEEEEcCCCCCEEEEEeCCCeEEEEEcC--CcEEEEecCCcccCcCEEEEEEcCCCC-EEEEEeCCcEEEEEeehhhhh
Q psy8448 283 VNSIHLLPKNTEHFVVCNKTNTVVIMNMQ--GQIVRSLSSGKREGGDFLCCTTSPRGE-WIYCVGEDMVLVVRLIQQYLK 359 (482)
Q Consensus 283 v~~i~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~~~v~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~ 359 (482)
|++++|+|++..++++++.||.|++||++ +..+..+..+ ...|.+++|+|+++ +|++++.||.|+||++.....
T Consensus 280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h---~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~ 356 (430)
T 2xyi_A 280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH---KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 356 (430)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECC---SSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTC
T ss_pred eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecC---CCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcc
Confidence 99999999996789999999999999994 4556666654 77899999999985 689999999999776642110
Q ss_pred hhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccc
Q psy8448 360 ESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQ 439 (482)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (482)
.... -+...+ ...+..
T Consensus 357 ~~~~------~~~~~~----------------------------------------------------------~~~~~~ 372 (430)
T 2xyi_A 357 EQST------EDAEDG----------------------------------------------------------PPELLF 372 (430)
T ss_dssp CCCH------HHHHHC----------------------------------------------------------CTTEEE
T ss_pred ccCc------cccccC----------------------------------------------------------CcceEE
Confidence 0000 000000 000123
Q ss_pred cCcccccccCcceecccceeeccccCCcc-eEEEEecCceeecC
Q psy8448 440 TDPMIFMKQHEPEVHEKLVIGLTHHPHQN-LLGTYSEDGLLRFS 482 (482)
Q Consensus 440 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~~~Dg~i~iW 482 (482)
.+.+|...|++++|+|+++ +|++++.||.|+||
T Consensus 373 ----------~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw 406 (430)
T 2xyi_A 373 ----------IHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 406 (430)
T ss_dssp ----------ECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEE
T ss_pred ----------EcCCCCCCceEEEECCCCCCEEEEEECCCCEEEe
Confidence 6678999999999999999 89999999999998
No 106
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-32 Score=250.64 Aligned_cols=256 Identities=21% Similarity=0.364 Sum_probs=217.0
Q ss_pred cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccccccccccccc
Q psy8448 73 FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEA 152 (482)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~ 152 (482)
.++.+.+|+..... .......|...|.+++|+|++++|++|+.||.|++|++...... .....+.+|...
T Consensus 37 ~dg~v~vw~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~-----~~~~~~~~~~~~ 106 (313)
T 3odt_A 37 RDGTVRLWSKDDQW-----LGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGE-----DPLYTLIGHQGN 106 (313)
T ss_dssp TTSEEEEEEESSSE-----EEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTS-----CC-CEECCCSSC
T ss_pred cCCcEEEEECCCCE-----EEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCC-----CcccchhhcccC
Confidence 36778888874432 22334488999999999999999999999999999999865422 122234557899
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEcc-CCCEEEEEECCCeEEEEeCCCCceEEEe
Q psy8448 153 VMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSR-DNSQILTASFDTYVRIHGLKSGKMLKEF 231 (482)
Q Consensus 153 i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 231 (482)
|.+++| +++++++++.||.|++|| .++....+ ..|...+.+++|+| ++.++++++.|+.|++|| ..+....+
T Consensus 107 i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~ 179 (313)
T 3odt_A 107 VCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNL-QAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTF 179 (313)
T ss_dssp EEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEE-ECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEE
T ss_pred EEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEec-ccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEE
Confidence 999999 577999999999999999 66667776 67999999999998 899999999999999999 45666777
Q ss_pred ec-cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc
Q psy8448 232 RG-HSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM 310 (482)
Q Consensus 232 ~~-~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~ 310 (482)
.. |...+.+++|+|++. +++++.||.|++||+++++.+..+. .|...|.+++|+|++ .+++++.|+.|++||+
T Consensus 180 ~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~--~l~~~~~dg~v~iwd~ 253 (313)
T 3odt_A 180 SGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYE---GHESFVYCIKLLPNG--DIVSCGEDRTVRIWSK 253 (313)
T ss_dssp CSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEE---CCSSCEEEEEECTTS--CEEEEETTSEEEEECT
T ss_pred eccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhh---cCCceEEEEEEecCC--CEEEEecCCEEEEEEC
Confidence 76 899999999999988 9999999999999999999888887 788999999999997 4889999999999999
Q ss_pred -CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448 311 -QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ 355 (482)
Q Consensus 311 -~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~ 355 (482)
+++.+..+..+ ...+.+++|+|+++ +++++.||.|++|+++
T Consensus 254 ~~~~~~~~~~~~---~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 254 ENGSLKQVITLP---AISIWSVDCMSNGD-IIVGSSDNLVRIFSQE 295 (313)
T ss_dssp TTCCEEEEEECS---SSCEEEEEECTTSC-EEEEETTSCEEEEESC
T ss_pred CCCceeEEEecc---CceEEEEEEccCCC-EEEEeCCCcEEEEeCC
Confidence 67777777655 67899999999998 6679999999977665
No 107
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1e-32 Score=261.11 Aligned_cols=278 Identities=21% Similarity=0.304 Sum_probs=218.8
Q ss_pred CC-CCceeec--cCCccccccccccccccccce--------eeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEecCC
Q psy8448 64 LP-PGTTIDL--FRGKAAMKDQEEEKYPTQLSK--------QIKFGSKSHVECARFSP-DGQYLITGSVDGFIEVWNFTT 131 (482)
Q Consensus 64 ~~-~g~~~~~--~~~~~~~~~~~~~~~~~~~~~--------~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~v~iwd~~~ 131 (482)
.| ++..++. .++.+.+|+............ ....+|...|.+++|+| ++++|++++.||.|++||+.+
T Consensus 52 s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 131 (408)
T 4a11_B 52 EPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNT 131 (408)
T ss_dssp CTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTT
T ss_pred ecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCC
Confidence 35 5655544 367788998776544333221 11136999999999999 788999999999999999999
Q ss_pred CceeeccccccccccccccccEEEEEEcCC---CCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCC-E
Q psy8448 132 GKIRKDLKYQAQDNFMLMEEAVMSLAYSRD---SEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNS-Q 207 (482)
Q Consensus 132 ~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~ 207 (482)
++....+. +...+.++.|+|. +.++++++.||.|++||+++++.+..+ ..|...|.+++|+|+++ .
T Consensus 132 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l 201 (408)
T 4a11_B 132 LQTADVFN---------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHIL-QGHRQEILAVSWSPRYDYI 201 (408)
T ss_dssp TEEEEEEE---------CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEE-CCCCSCEEEEEECSSCTTE
T ss_pred Cccceecc---------CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeee-cCCCCcEEEEEECCCCCcE
Confidence 88766554 2467999999984 449999999999999999999988888 68999999999999998 5
Q ss_pred EEEEECCCeEEEEeCCCCc-eEEEe---------------eccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceee
Q psy8448 208 ILTASFDTYVRIHGLKSGK-MLKEF---------------RGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTS 271 (482)
Q Consensus 208 l~~~~~dg~i~i~d~~~~~-~~~~~---------------~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 271 (482)
+++++.||.|++||++++. .+..+ ..|...|.+++|+|++++|++++.||.|++||+++++...
T Consensus 202 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 281 (408)
T 4a11_B 202 LATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTL 281 (408)
T ss_dssp EEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCC
T ss_pred EEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccce
Confidence 8899999999999998775 33333 5688999999999999999999999999999999987654
Q ss_pred eeeccC--CCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcE
Q psy8448 272 TFKSLG--ASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMV 348 (482)
Q Consensus 272 ~~~~~~--~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~ 348 (482)
.+.... .....+ ...+.......+++++.++.|++||+ +++.+..+..+ ...|.+++|+|++++|++++.||.
T Consensus 282 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~s~~~dg~ 357 (408)
T 4a11_B 282 VNYGKVCNNSKKGL-KFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGH---YKTVDCCVFQSNFQELYSGSRDCN 357 (408)
T ss_dssp CCCCCCCCCCSSCC-CCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCC---SSCEEEEEEETTTTEEEEEETTSC
T ss_pred eccccccccccccc-eeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccC---CCeEEEEEEcCCCCEEEEECCCCe
Confidence 433111 111112 22233333367778888999999999 67888888765 788999999999999999999999
Q ss_pred EEEEeeh
Q psy8448 349 LVVRLIQ 355 (482)
Q Consensus 349 i~iw~~~ 355 (482)
|++|+++
T Consensus 358 i~iw~~~ 364 (408)
T 4a11_B 358 ILAWVPS 364 (408)
T ss_dssp EEEEEEC
T ss_pred EEEEeCC
Confidence 9955443
No 108
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=271.37 Aligned_cols=273 Identities=13% Similarity=0.212 Sum_probs=208.5
Q ss_pred cCCcccccccccccc------ccccceeeecCCC------------CcEEEEEEcCCC--CEEEEEeCCCeEEEEecCCC
Q psy8448 73 FRGKAAMKDQEEEKY------PTQLSKQIKFGSK------------SHVECARFSPDG--QYLITGSVDGFIEVWNFTTG 132 (482)
Q Consensus 73 ~~~~~~~~~~~~~~~------~~~~~~~~~~~h~------------~~v~~~~~s~~~--~~l~s~~~dg~v~iwd~~~~ 132 (482)
.++.+.+|+...... ........+.+|. ..|++++|+|++ .+|++++.||.|++||+.++
T Consensus 48 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~ 127 (447)
T 3dw8_B 48 KGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISER 127 (447)
T ss_dssp TTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEE
T ss_pred CCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccc
Confidence 367788888765431 1111223445898 889999999998 79999999999999999765
Q ss_pred ceeec-------------------ccc------------ccc-cccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q psy8448 133 KIRKD-------------------LKY------------QAQ-DNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIA 180 (482)
Q Consensus 133 ~~~~~-------------------~~~------------~~~-~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~ 180 (482)
+.... +.. ... ....+|...|++++|+|++++|++| .|+.|++||++
T Consensus 128 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~ 206 (447)
T 3dw8_B 128 DKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLE 206 (447)
T ss_dssp EEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETT
T ss_pred cCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECC
Confidence 43211 000 000 1135689999999999999999998 79999999998
Q ss_pred CC-eEeEEe------ecccCCCeEEEEEccCC-CEEEEEECCCeEEEEeCCCCce----EEEeecccc------------
Q psy8448 181 TG-QCLRKL------EKAHSLGVTCIQFSRDN-SQILTASFDTYVRIHGLKSGKM----LKEFRGHSS------------ 236 (482)
Q Consensus 181 ~~-~~~~~~------~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~------------ 236 (482)
+. +....+ ...|...|.+++|+|++ .+|++|+.||.|++||+++++. +..+..|..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (447)
T 3dw8_B 207 ITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIIS 286 (447)
T ss_dssp EEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTT
T ss_pred CCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCc
Confidence 44 334322 25788999999999998 9999999999999999999886 678887776
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeeeeeccCCCccc---------------eeEEEEcCCCCCEEEEEe
Q psy8448 237 FVNDITFTADGHSVLSASSDGTVKMWNLKT-TECTSTFKSLGASDIA---------------VNSIHLLPKNTEHFVVCN 300 (482)
Q Consensus 237 ~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~---------------v~~i~~~~~~~~~l~~~~ 300 (482)
.|.+++|+|++++|++++. +.|++||+++ ++++..+. .|... +..++|+|++ .++++++
T Consensus 287 ~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~-~~l~s~s 361 (447)
T 3dw8_B 287 SISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQ---VHEYLRSKLCSLYENDCIFDKFECCWNGSD-SVVMTGS 361 (447)
T ss_dssp CEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEE---SCGGGTTTHHHHHHTSGGGCCCCEEECTTS-SEEEEEC
T ss_pred eEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceee---ccccccccccccccccccccceEEEECCCC-CEEEEec
Confidence 8999999999999999999 9999999997 77777776 44321 3349999998 8899999
Q ss_pred CCCeEEEEEcCCcEEEEecCCc------------------------------ccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448 301 KTNTVVIMNMQGQIVRSLSSGK------------------------------REGGDFLCCTTSPRGEWIYCVGEDMVLV 350 (482)
Q Consensus 301 ~d~~i~i~d~~~~~~~~~~~~~------------------------------~~~~~v~~~~~~~~g~~l~~~~~dg~i~ 350 (482)
.||.|++||+.......+..+. .....|..++|+|++++|++++.++ ++
T Consensus 362 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~ 440 (447)
T 3dw8_B 362 YNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LY 440 (447)
T ss_dssp STTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EE
T ss_pred cCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-ee
Confidence 9999999999543333333221 1245688999999999999998887 56
Q ss_pred EE
Q psy8448 351 VR 352 (482)
Q Consensus 351 iw 352 (482)
+|
T Consensus 441 ~~ 442 (447)
T 3dw8_B 441 IF 442 (447)
T ss_dssp EE
T ss_pred ee
Confidence 44
No 109
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.4e-32 Score=254.50 Aligned_cols=233 Identities=16% Similarity=0.204 Sum_probs=185.5
Q ss_pred cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEE-EEEeCCCcEE
Q psy8448 97 FGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEML-ASGSQSGKVK 175 (482)
Q Consensus 97 ~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l-~~~~~dg~i~ 175 (482)
.+|.+.|++++|+|||++|++|+.++ ++||++.+++...... ...+..+++.++++.+ ++++.|+.|+
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~d~~v~ 84 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQE----------MRHLSKVRMLHRTNYVAFVTGVKEVVH 84 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEE----------CSCCCEEEECTTSSEEEEECSSTTEEE
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeee----------cCCeEEEEEcCCCCEEEEEECCccEEE
Confidence 48999999999999999999998765 7899988766543321 1247778888888877 4567889999
Q ss_pred EEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCC-ceEEEeeccccceeEEEEcCCCCEEEE--
Q psy8448 176 IWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSG-KMLKEFRGHSSFVNDITFTADGHSVLS-- 252 (482)
Q Consensus 176 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~l~~~~~~~~l~~-- 252 (482)
+||+.+++.+..+. +...|.+++|+++. ++++. ++.|++||+.++ +.+..+.. +...+++++ .++++
T Consensus 85 iWd~~~~~~~~~~~--~~~~v~~v~~~~~~--~~~~~-~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~s 154 (355)
T 3vu4_A 85 IWDDVKKQDVSRIK--VDAPVKDLFLSREF--IVVSY-GDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSN 154 (355)
T ss_dssp EEETTTTEEEEEEE--CSSCEEEEEECSSE--EEEEE-TTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEE
T ss_pred EEECCCCcEEEEEE--CCCceEEEEEcCCE--EEEEE-cCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeC
Confidence 99999999988874 67789999998763 55544 889999999988 66666654 444566666 56666
Q ss_pred EeCCCcEEEEECCCCc----------------eeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCe-EEEEEc-CCcE
Q psy8448 253 ASSDGTVKMWNLKTTE----------------CTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNT-VVIMNM-QGQI 314 (482)
Q Consensus 253 ~~~dg~i~i~d~~~~~----------------~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~-i~i~d~-~~~~ 314 (482)
|+.+|.|++||+++++ +...+. +|..+|.+++|+|++ .++++++.|++ |++||+ +++.
T Consensus 155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~---~h~~~v~~~~~s~~g-~~l~s~s~d~~~v~iwd~~~~~~ 230 (355)
T 3vu4_A 155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK---AHTNPIKMVRLNRKS-DMVATCSQDGTIIRVFKTEDGVL 230 (355)
T ss_dssp SSCTTCEEEEECCC------------------CCEEEC---CCSSCEEEEEECTTS-SEEEEEETTCSEEEEEETTTCCE
T ss_pred CCcCcEEEEEECCCCCccccccccccccccCcccEEEE---ccCCceEEEEECCCC-CEEEEEeCCCCEEEEEECCCCcE
Confidence 5789999999999865 134444 899999999999998 89999999998 999999 5888
Q ss_pred EEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448 315 VRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ 355 (482)
Q Consensus 315 ~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~ 355 (482)
+..+..+ .|...|.+++|+|+|++|++++.|+.|++|+++
T Consensus 231 ~~~~~~g-~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~ 270 (355)
T 3vu4_A 231 VREFRRG-LDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIF 270 (355)
T ss_dssp EEEEECT-TCCSCEEEEEECTTSCEEEEEETTCEEEEEESS
T ss_pred EEEEEcC-CCCCcEEEEEECCCCCEEEEEECCCEEEEEEcc
Confidence 8888732 026899999999999999999999999988765
No 110
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=1.8e-32 Score=261.67 Aligned_cols=233 Identities=11% Similarity=0.149 Sum_probs=195.7
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy8448 100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKI 179 (482)
Q Consensus 100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~ 179 (482)
...+.+++|+|++.++++++.++.|++||+.+++....... ..+.+|...|.+++|+|+++++++++.|+.|++||+
T Consensus 122 ~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~ 198 (433)
T 3bws_A 122 GFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPP---EKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDL 198 (433)
T ss_dssp SSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCC---HHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEET
T ss_pred CCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCc---ccccccCCceeEEEEcCCCEEEEEECCCCEEEEEEC
Confidence 34567999999888888888899999999999887653332 133457889999999999999999999999999999
Q ss_pred CCCeEeEEeecccCCCeEEEEEccCCCEEEEEE-CCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEe----
Q psy8448 180 ATGQCLRKLEKAHSLGVTCIQFSRDNSQILTAS-FDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSAS---- 254 (482)
Q Consensus 180 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~---- 254 (482)
.+++....+ ..|...+.+++|+|+++.+++++ .|+.|++||+++++.+..+..+ ..+.+++|+|+++.+++++
T Consensus 199 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~ 276 (433)
T 3bws_A 199 KTLAYKATV-DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSAS 276 (433)
T ss_dssp TTCCEEEEE-ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESC
T ss_pred CCceEEEEE-cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCC
Confidence 999888888 57888999999999999886555 7999999999999988887754 4589999999999999888
Q ss_pred ----CCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CcEEEEecCCcccCcCEE
Q psy8448 255 ----SDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSGKREGGDFL 329 (482)
Q Consensus 255 ----~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~v~ 329 (482)
.|+.|++||+++++....+ .+...+.+++|+|++..++++++.++.|++||+. ++....+.. ...+.
T Consensus 277 ~~~~~dg~i~~~d~~~~~~~~~~----~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~----~~~~~ 348 (433)
T 3bws_A 277 NQESGGGRLGIYSMDKEKLIDTI----GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPV----FDKPN 348 (433)
T ss_dssp TTCSCCEEEEEEETTTTEEEEEE----EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEEC----SSSEE
T ss_pred ccccCCCeEEEEECCCCcEEeec----cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecC----CCCCC
Confidence 5889999999998877665 4455788999999995577788999999999994 666665542 56789
Q ss_pred EEEEcCCCCEEEEEeC
Q psy8448 330 CCTTSPRGEWIYCVGE 345 (482)
Q Consensus 330 ~~~~~~~g~~l~~~~~ 345 (482)
+++|+|+|++|++++.
T Consensus 349 ~~~~s~dg~~l~~~~~ 364 (433)
T 3bws_A 349 TIALSPDGKYLYVSCR 364 (433)
T ss_dssp EEEECTTSSEEEEEEC
T ss_pred eEEEcCCCCEEEEEec
Confidence 9999999999998876
No 111
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3.4e-32 Score=248.53 Aligned_cols=262 Identities=19% Similarity=0.283 Sum_probs=213.6
Q ss_pred cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccccccccccccc
Q psy8448 73 FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEA 152 (482)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~ 152 (482)
.++.+.+|+.........+ ...+|...|++++|+|++++||+|+.||+|++||+++++.+..+. +|...
T Consensus 43 ~D~tV~iWd~~tg~~~~~~---~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~--------~h~~~ 111 (318)
T 4ggc_A 43 LDNSVYLWSASSGDILQLL---QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT--------SHSAR 111 (318)
T ss_dssp ETTEEEEEETTTCCEEEEE---ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--------CCSSC
T ss_pred eCCEEEEEECCCCCEEEEE---EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEec--------Cccce
Confidence 4677899987654322111 234788999999999999999999999999999999988766554 34667
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCce----E
Q psy8448 153 VMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKM----L 228 (482)
Q Consensus 153 i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~ 228 (482)
+.++.+ ++..+++++.++.+++|+.............|...+..+.++++++++++++.|+.|++||+++++. .
T Consensus 112 ~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 189 (318)
T 4ggc_A 112 VGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL 189 (318)
T ss_dssp EEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCS
T ss_pred EEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccce
Confidence 776555 5679999999999999998877554444478999999999999999999999999999999988753 3
Q ss_pred EEeeccccceeEEEEcCCCCEE---EEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEE--eCCC
Q psy8448 229 KEFRGHSSFVNDITFTADGHSV---LSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVC--NKTN 303 (482)
Q Consensus 229 ~~~~~~~~~i~~l~~~~~~~~l---~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~--~~d~ 303 (482)
.....+.+.|.++.++|++..+ ++++.++.|++||.+........ .+...+..+.|+|.+ ..++++ +.|+
T Consensus 190 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~----~~~~~v~~~~~~~~~-~~~~~~sg~~d~ 264 (318)
T 4ggc_A 190 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV----DAHSQVCSILWSPHY-KELISGHGFAQN 264 (318)
T ss_dssp EEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE----ECSSCEEEEEEETTT-TEEEEEECTTTC
T ss_pred eeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc----cceeeeeeeeecccc-cceEEEEEcCCC
Confidence 4455688899999999976543 35567899999999988876665 556789999999998 455544 3789
Q ss_pred eEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448 304 TVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ 355 (482)
Q Consensus 304 ~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~ 355 (482)
.|++||+ +++.+..+..| ...|++++|+|+|++|++|+.||.|+||++.
T Consensus 265 ~i~iwd~~~~~~~~~l~gH---~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 265 QLVIWKYPTMAKVAELKGH---TSRVLSLTMSPDGATVASAAADETLRLWRCF 314 (318)
T ss_dssp CEEEEETTTCCEEEEECCC---SSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred EEEEEECCCCcEEEEEcCC---CCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 9999999 68888888765 7899999999999999999999999988764
No 112
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.9e-33 Score=280.45 Aligned_cols=250 Identities=20% Similarity=0.233 Sum_probs=205.2
Q ss_pred ccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcC--CCeEeEEeecccCCCeEEEEEccC--CCEEEEEECCCeEEEE
Q psy8448 145 NFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIA--TGQCLRKLEKAHSLGVTCIQFSRD--NSQILTASFDTYVRIH 220 (482)
Q Consensus 145 ~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~dg~i~i~ 220 (482)
.+.+|.+.|++++|+|++++|++|+.||.|++||+. +++....+ .+|...|.+++|+|+ +.+|++|+.||.|++|
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l-~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceec-cCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 345789999999999999999999999999999998 44556666 689999999999987 9999999999999999
Q ss_pred eCCCCc--eEEEeeccccceeEEEEcCC--CCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCC-----
Q psy8448 221 GLKSGK--MLKEFRGHSSFVNDITFTAD--GHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPK----- 291 (482)
Q Consensus 221 d~~~~~--~~~~~~~~~~~i~~l~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~----- 291 (482)
|+++++ .+..+.+|...|.+++|+|+ ++.+++++.||.|++||++++....... ...|...|.+++|+|.
T Consensus 83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~-~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII-IDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE-EECCSSCEEEEEECCCC----
T ss_pred ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE-eecCCCceEEEEecCcccccc
Confidence 999987 67778889999999999999 9999999999999999999874332221 1278889999999995
Q ss_pred -------CCCEEEEEeCCCeEEEEEcC-C----cEEEEecCCcccCcCEEEEEEcCC---CCEEEEEeCCcEEEEEeehh
Q psy8448 292 -------NTEHFVVCNKTNTVVIMNMQ-G----QIVRSLSSGKREGGDFLCCTTSPR---GEWIYCVGEDMVLVVRLIQQ 356 (482)
Q Consensus 292 -------~~~~l~~~~~d~~i~i~d~~-~----~~~~~~~~~~~~~~~v~~~~~~~~---g~~l~~~~~dg~i~iw~~~~ 356 (482)
++..+++++.||.|++||++ + .....+..+ ...|.+++|+|+ +++|++++.||.|++|+
T Consensus 162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h---~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd--- 235 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH---SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT--- 235 (753)
T ss_dssp -----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC---SSCEEEEEECCCCSSSEEEEEEESSSCEEEEE---
T ss_pred cccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC---CCcEEEEEeccCCCCCCEEEEEecCCEEEEec---
Confidence 23899999999999999993 3 333444443 789999999999 99999999999999554
Q ss_pred hhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhh
Q psy8448 357 YLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSL 436 (482)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (482)
..++..... ..
T Consensus 236 ---------------~~~~~~~~~--------------------------~~---------------------------- 246 (753)
T 3jro_A 236 ---------------QDNEQGPWK--------------------------KT---------------------------- 246 (753)
T ss_dssp ---------------ESSSSSCCB--------------------------CC----------------------------
T ss_pred ---------------CCCCCCcce--------------------------eE----------------------------
Confidence 443300000 00
Q ss_pred ccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448 437 LRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS 482 (482)
Q Consensus 437 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW 482 (482)
.. ....|...|++++|+|+|++|++|+.||.|++|
T Consensus 247 -~~----------~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vw 281 (753)
T 3jro_A 247 -LL----------KEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281 (753)
T ss_dssp -BS----------SSSCCSSCCCCEEECTTTCCEEEECSSSCEECC
T ss_pred -Ee----------ccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEE
Confidence 11 445688899999999999999999999999999
No 113
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=8e-32 Score=257.13 Aligned_cols=251 Identities=22% Similarity=0.401 Sum_probs=213.1
Q ss_pred cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccccccccccccc
Q psy8448 73 FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEA 152 (482)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~ 152 (482)
.++.+.+|+...... ...+.+|...|.+++| ++++|++|+.||.|++||+.+++....+. +|...
T Consensus 151 ~dg~i~iwd~~~~~~-----~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~--------~h~~~ 215 (435)
T 1p22_A 151 RDNTIKIWDKNTLEC-----KRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLI--------HHCEA 215 (435)
T ss_dssp SSSCEEEEESSSCCE-----EEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEEC--------CCCSC
T ss_pred CCCeEEEEeCCCCeE-----EEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEc--------CCCCc
Confidence 466788887654322 2334589999999999 78899999999999999999988765544 35789
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEe---EEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEE
Q psy8448 153 VMSLAYSRDSEMLASGSQSGKVKIWKIATGQCL---RKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLK 229 (482)
Q Consensus 153 i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 229 (482)
|.+++|++ .++++|+.||.|++||+.++... ..+ .+|...|.+++| +++++++|+.||.|++||+++++.+.
T Consensus 216 v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~ 290 (435)
T 1p22_A 216 VLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVL-VGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVR 290 (435)
T ss_dssp EEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEe-cCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEE
Confidence 99999974 59999999999999999887655 344 689999999999 67899999999999999999999999
Q ss_pred EeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEE
Q psy8448 230 EFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMN 309 (482)
Q Consensus 230 ~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d 309 (482)
.+.+|...|.++.++ ++++++|+.||.|++||+++++++..+. +|...|.+++| ++ .++++++.||.|++||
T Consensus 291 ~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~~~~--~~-~~l~sg~~dg~i~vwd 362 (435)
T 1p22_A 291 TLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLE---GHEELVRCIRF--DN-KRIVSGAYDGKIKVWD 362 (435)
T ss_dssp EEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEEC---CCSSCEEEEEC--CS-SEEEEEETTSCEEEEE
T ss_pred EEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEe---CCcCcEEEEEe--cC-CEEEEEeCCCcEEEEE
Confidence 999999999999994 6899999999999999999999888887 78899999999 44 7999999999999999
Q ss_pred cC-Cc---------EEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehh
Q psy8448 310 MQ-GQ---------IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQ 356 (482)
Q Consensus 310 ~~-~~---------~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~ 356 (482)
+. +. .+..+..+ ...|.+++| ++.+|++++.||.|++|++..
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~h---~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 363 LVAALDPRAPAGTLCLRTLVEH---SGRVFRLQF--DEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp HHHHTSTTSCTTTTEEEEECCC---SSCCCCEEE--CSSCEEECCSSSEEEEEC---
T ss_pred CCCCCCccccccchheeeccCC---CCCeEEEEe--CCCEEEEEeCCCEEEEEECCC
Confidence 83 33 56666655 778999999 788999999999999887653
No 114
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1.3e-32 Score=258.54 Aligned_cols=239 Identities=11% Similarity=0.076 Sum_probs=172.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEE----eecccCCCeEEEEEcc--------CCCEEEEEECCCeEEEE
Q psy8448 153 VMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRK----LEKAHSLGVTCIQFSR--------DNSQILTASFDTYVRIH 220 (482)
Q Consensus 153 i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~~v~~i~~~~--------~~~~l~~~~~dg~i~i~ 220 (482)
.....+.+++.+|++++.|++|++||+++++.... ...+|...|.+++|+| ++++|++++.|++|++|
T Consensus 92 ~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~W 171 (393)
T 4gq1_A 92 GNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW 171 (393)
T ss_dssp -----CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEE
T ss_pred cceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEE
Confidence 33344445667899999999999999988865432 1267999999999998 78899999999999999
Q ss_pred eCCCCceEEEeeccccceeEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeeeee----------------------ccC
Q psy8448 221 GLKSGKMLKEFRGHSSFVNDITFTADGH-SVLSASSDGTVKMWNLKTTECTSTFK----------------------SLG 277 (482)
Q Consensus 221 d~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~----------------------~~~ 277 (482)
|++++.++..+..|...+.+++|+|++. +|++++.|++|++||+++++...... ...
T Consensus 172 d~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 251 (393)
T 4gq1_A 172 RLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSS 251 (393)
T ss_dssp EEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------
T ss_pred ECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecc
Confidence 9999988888888999999999999874 79999999999999999876443221 012
Q ss_pred CCccceeEEEEc-CCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCccc---------------CcCEEEEEEcC--CCC
Q psy8448 278 ASDIAVNSIHLL-PKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKRE---------------GGDFLCCTTSP--RGE 338 (482)
Q Consensus 278 ~~~~~v~~i~~~-~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~---------------~~~v~~~~~~~--~g~ 338 (482)
++...+.++.|. |++ ..+++++.|+.+++||+ .++....+..+... ........++| ++.
T Consensus 252 ~~~~~v~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (393)
T 4gq1_A 252 GIASSLANVRWIGSDG-SGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDY 330 (393)
T ss_dssp CCSSSCSEEEEETTTT-CEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTE
T ss_pred cccccceeeeeecCCC-CEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCE
Confidence 566778899987 565 89999999999999999 34433333322100 01111223333 344
Q ss_pred EEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhhhhhH
Q psy8448 339 WIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYE 418 (482)
Q Consensus 339 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 418 (482)
++++|+.||.|+ +|+..++ ..
T Consensus 331 ~~~sgs~Dg~V~------------------lwd~~~~-------------------------------~~---------- 351 (393)
T 4gq1_A 331 FATAHSQHGLIQ------------------LINTYEK-------------------------------DS---------- 351 (393)
T ss_dssp EEEEETTTTEEE------------------EEETTCT-------------------------------TC----------
T ss_pred EEEEECCCCEEE------------------EEECCCC-------------------------------cE----------
Confidence 677888999999 6666665 22
Q ss_pred HHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceee
Q psy8448 419 QVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLR 480 (482)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~ 480 (482)
.. .+.+|..+|++++|+|||++||++++||.+.
T Consensus 352 -------------------~~----------~~~~~~~~V~svafspdG~~LA~as~~Gv~l 384 (393)
T 4gq1_A 352 -------------------NS----------IPIQLGMPIVDFCWHQDGSHLAIATEGSVLL 384 (393)
T ss_dssp -------------------CE----------EEEECSSCEEEEEECTTSSEEEEEESSEEEE
T ss_pred -------------------EE----------EecCCCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 22 5567888999999999999999999888743
No 115
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.7e-31 Score=246.47 Aligned_cols=257 Identities=11% Similarity=0.136 Sum_probs=210.5
Q ss_pred cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEec-CCCceeecccccccccccc--
Q psy8448 73 FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQ-YLITGSVDGFIEVWNF-TTGKIRKDLKYQAQDNFML-- 148 (482)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~v~iwd~-~~~~~~~~~~~~~~~~~~~-- 148 (482)
.++.+.+|+.......... ....+|...|++++|+|+++ +|++|+.||.|++||+ .+++. ..+.+
T Consensus 31 ~d~~v~iw~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~---------~~~~~~~ 99 (342)
T 1yfq_A 31 WDGSLTVYKFDIQAKNVDL--LQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF---------QALTNNE 99 (342)
T ss_dssp TTSEEEEEEEETTTTEEEE--EEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE---------EECBSCC
T ss_pred CCCeEEEEEeCCCCccccc--eeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce---------EeccccC
Confidence 3677888887654422222 22338999999999999999 9999999999999999 77654 12334
Q ss_pred ccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCC---------CeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEE
Q psy8448 149 MEEAVMSLAYSRDSEMLASGSQSGKVKIWKIAT---------GQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRI 219 (482)
Q Consensus 149 h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i 219 (482)
|...|.+++|+| +++|++++.|+.|++||+++ ++.+..+. |...+.+++|+|++ +++++.|+.|++
T Consensus 100 ~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~--l~~~~~d~~i~i 174 (342)
T 1yfq_A 100 ANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK--VKNKIFTMDTNSSR--LIVGMNNSQVQW 174 (342)
T ss_dssp CCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS--SCCCEEEEEECSSE--EEEEESTTEEEE
T ss_pred CCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe--eCCceEEEEecCCc--EEEEeCCCeEEE
Confidence 678999999999 99999999999999999987 66666553 88899999999887 999999999999
Q ss_pred EeCCC-Cce--EEEeeccccceeEEEEcC-CCCEEEEEeCCCcEEEEECCCC------ceeeeeeccC------CCccce
Q psy8448 220 HGLKS-GKM--LKEFRGHSSFVNDITFTA-DGHSVLSASSDGTVKMWNLKTT------ECTSTFKSLG------ASDIAV 283 (482)
Q Consensus 220 ~d~~~-~~~--~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~------~~~~~v 283 (482)
||+++ +.. ......|...|.+++|+| +++++++++.||.|++|+++.. +....+.... .+...|
T Consensus 175 ~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 254 (342)
T 1yfq_A 175 FRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPV 254 (342)
T ss_dssp EESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCE
T ss_pred EECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeE
Confidence 99998 543 334456888999999999 9999999999999999999886 6666665211 123499
Q ss_pred eEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcE-EE
Q psy8448 284 NSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMV-LV 350 (482)
Q Consensus 284 ~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~-i~ 350 (482)
.+++|+|++ .++++++.||.|++||+ +++.+..+..++ ...|.+++ |++++|++++.||. .+
T Consensus 255 ~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h--~~~v~~~~--~~~~~l~s~s~Dg~~~~ 318 (342)
T 1yfq_A 255 NSIEFSPRH-KFLYTAGSDGIISCWNLQTRKKIKNFAKFN--EDSVVKIA--CSDNILCLATSDDTFKT 318 (342)
T ss_dssp EEEEECTTT-CCEEEEETTSCEEEEETTTTEEEEECCCCS--SSEEEEEE--ECSSEEEEEEECTHHHH
T ss_pred EEEEEcCCC-CEEEEecCCceEEEEcCccHhHhhhhhccc--CCCceEec--CCCCeEEEEecCCcccc
Confidence 999999998 78999999999999999 577777766542 67889998 99999999999998 44
No 116
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=4.3e-32 Score=254.96 Aligned_cols=240 Identities=14% Similarity=0.138 Sum_probs=174.2
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC--------CCCEEEEEeCCC
Q psy8448 101 SHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR--------DSEMLASGSQSG 172 (482)
Q Consensus 101 ~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~--------~~~~l~~~~~dg 172 (482)
..+....+++++.+||+|+.|++|+|||+++++.... .....+.+|.+.|++++|+| ++++|++|+.|+
T Consensus 90 ~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~---~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~ 166 (393)
T 4gq1_A 90 GDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQ---HVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC 166 (393)
T ss_dssp -------CCEEEEEEEEEETTSCEEEEEEETTEEEEE---EEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred CCcceeecCCCCCEEEEEeCCCcEEEEECCCCcccee---eeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence 3333344445677899999999999999988765432 22335677999999999998 789999999999
Q ss_pred cEEEEEcCCCeEeEEeecccCCCeEEEEEccCCC-EEEEEECCCeEEEEeCCCCceEEEe--------------------
Q psy8448 173 KVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNS-QILTASFDTYVRIHGLKSGKMLKEF-------------------- 231 (482)
Q Consensus 173 ~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~-------------------- 231 (482)
+|++||+.++.....+ ..|...+.+++|+|++. +|++++.|+.|++||+++++.....
T Consensus 167 tv~~Wd~~~~~~~~~~-~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~ 245 (393)
T 4gq1_A 167 TLIIWRLTDEGPILAG-YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV 245 (393)
T ss_dssp EEEEEEEETTEEEEEE-EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC
T ss_pred eEEEEECCCCceeeee-cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce
Confidence 9999999988877777 57888999999999874 7999999999999999887643321
Q ss_pred -----eccccceeEEEEc-CCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCcccee------------------EEE
Q psy8448 232 -----RGHSSFVNDITFT-ADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVN------------------SIH 287 (482)
Q Consensus 232 -----~~~~~~i~~l~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~------------------~i~ 287 (482)
.+|...+.++.|. |+++.|++++.|+.+++||+..++....+. .+...+. ...
T Consensus 246 ~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (393)
T 4gq1_A 246 NTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEIS---DSTMKLGPKNLLPNVQGISLFPSLLGAC 322 (393)
T ss_dssp ------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------------CCSCSEEEECSSCCSSCCE
T ss_pred eeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEe---eecCccccEEEccccccccccCcceeEE
Confidence 3577788999987 799999999999999999998876554443 2222222 233
Q ss_pred EcCC-CCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448 288 LLPK-NTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLV 350 (482)
Q Consensus 288 ~~~~-~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~ 350 (482)
++|. +..++++++.|+.|++||. +++.......+ ..+|.+++|+|||++||+++.+|.+.
T Consensus 323 ~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~---~~~V~svafspdG~~LA~as~~Gv~l 384 (393)
T 4gq1_A 323 PHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQL---GMPIVDFCWHQDGSHLAIATEGSVLL 384 (393)
T ss_dssp ECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEEC---SSCEEEEEECTTSSEEEEEESSEEEE
T ss_pred EccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCC---CCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 3443 3245667788999999999 56666655544 67899999999999999999887655
No 117
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=2.9e-30 Score=242.97 Aligned_cols=221 Identities=15% Similarity=0.190 Sum_probs=181.6
Q ss_pred CEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCeEeEEeecc
Q psy8448 113 QYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEML-ASGSQSGKVKIWKIATGQCLRKLEKA 191 (482)
Q Consensus 113 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~ 191 (482)
.++++++.|+.|++||+.+++....+..+ ..+.+++|+|+++++ ++++.|+.|++||+.+++....+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~---------~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~-- 71 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVG---------SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP-- 71 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECS---------SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE--
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecC---------CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEE--
Confidence 46788899999999999998877655433 458999999999977 566689999999999999888874
Q ss_pred cCCCeEEEEEccCCCEEEEEE-CCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEE-EEEeCCCcEEEEECCCCce
Q psy8448 192 HSLGVTCIQFSRDNSQILTAS-FDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSV-LSASSDGTVKMWNLKTTEC 269 (482)
Q Consensus 192 ~~~~v~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l-~~~~~dg~i~i~d~~~~~~ 269 (482)
+...+.+++|+|++++|++++ .++.|++||+.+++.+..+.. ...+.+++|+|+++.+ ++++.++.|++||+++++.
T Consensus 72 ~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~ 150 (391)
T 1l0q_A 72 AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV 150 (391)
T ss_dssp CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred CCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence 333899999999999886555 569999999999998888775 4568999999999987 6777899999999999988
Q ss_pred eeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEe---C
Q psy8448 270 TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVG---E 345 (482)
Q Consensus 270 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~---~ 345 (482)
...+. . ...+.+++|+|++..++++++.++.|++||+. ++....+.. ...+.+++|+|+|++|++++ .
T Consensus 151 ~~~~~---~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~~~~g~~l~~~~~~~~ 222 (391)
T 1l0q_A 151 INTVS---V-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV----EAAPSGIAVNPEGTKAYVTNVDKY 222 (391)
T ss_dssp EEEEE---C-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC----SSEEEEEEECTTSSEEEEEEECSS
T ss_pred EEEEe---c-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec----CCCccceEECCCCCEEEEEecCcC
Confidence 87775 3 34568999999995455778889999999994 555555543 45688999999999999888 6
Q ss_pred CcEEEEEe
Q psy8448 346 DMVLVVRL 353 (482)
Q Consensus 346 dg~i~iw~ 353 (482)
++.|++|+
T Consensus 223 ~~~v~~~d 230 (391)
T 1l0q_A 223 FNTVSMID 230 (391)
T ss_dssp CCEEEEEE
T ss_pred CCcEEEEE
Confidence 89999443
No 118
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.5e-31 Score=251.10 Aligned_cols=245 Identities=16% Similarity=0.166 Sum_probs=201.6
Q ss_pred CCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEecC--CCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcE
Q psy8448 98 GSKSHVECARFSPDGQYL-ITGSVDGFIEVWNFT--TGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKV 174 (482)
Q Consensus 98 ~h~~~v~~~~~s~~~~~l-~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i 174 (482)
+|.+.|++++|+|++++| ++|+.||.|+|||+. +++....+..+ .|...|++++|+|++++|++++.+|.|
T Consensus 100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~------~~~~~v~~~~~sp~~~~l~~~~~~g~v 173 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF------CFSKRPNAISIAEDDTTVIIADKFGDV 173 (450)
T ss_dssp CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE------ECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc------cCCCCceEEEEcCCCCEEEEEeCCCcE
Confidence 678899999999999996 899999999999999 77766655432 246789999999999999999999999
Q ss_pred EEEEcCCCeEeE----EeecccCCCeEEEEEccC---CCEEEEEECCCeEEEEeCCCCceEEE-eeccccceeEEEEcCC
Q psy8448 175 KIWKIATGQCLR----KLEKAHSLGVTCIQFSRD---NSQILTASFDTYVRIHGLKSGKMLKE-FRGHSSFVNDITFTAD 246 (482)
Q Consensus 175 ~iwd~~~~~~~~----~~~~~~~~~v~~i~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~l~~~~~ 246 (482)
++|++.+++... .+ .+|...|.+++|+|+ +++|++++.|+.|++||+++++.+.. +.+|...|.+++|+ +
T Consensus 174 ~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d 251 (450)
T 2vdu_B 174 YSIDINSIPEEKFTQEPI-LGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-K 251 (450)
T ss_dssp EEEETTSCCCSSCCCCCS-EECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-S
T ss_pred EEEecCCcccccccceee-ecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-C
Confidence 999998876543 44 578899999999999 99999999999999999999988877 56899999999999 9
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeeeeccC----------------------CCccceeEEEEcCCCCCEEEEEe-CCC
Q psy8448 247 GHSVLSASSDGTVKMWNLKTTECTSTFKSLG----------------------ASDIAVNSIHLLPKNTEHFVVCN-KTN 303 (482)
Q Consensus 247 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----------------------~~~~~v~~i~~~~~~~~~l~~~~-~d~ 303 (482)
+++|++++.|+.|++||+++++++..+.... .....+.+++|+|++ .++++++ .++
T Consensus 252 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~~d~ 330 (450)
T 2vdu_B 252 DYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL-PFVAFFVEATK 330 (450)
T ss_dssp TTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSS-SEEEEEETTCS
T ss_pred CCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCC-CEEEEEECCCC
Confidence 9999999999999999999999887775210 224578999999998 7788877 899
Q ss_pred eEEEEEc--C-C---cEEEEecCCcccCcCEEEEEEcCCCCEEEEEeC------CcEEEEEeeh
Q psy8448 304 TVVIMNM--Q-G---QIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGE------DMVLVVRLIQ 355 (482)
Q Consensus 304 ~i~i~d~--~-~---~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~------dg~i~iw~~~ 355 (482)
.|++|++ . + ..+..+.. ...+.+++|+|++.++++++. +..|.+|.+.
T Consensus 331 ~i~iw~~~~~~~~~l~~~~~~~~----~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 331 CIIILEMSEKQKGDLALKQIITF----PYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp EEEEEEECSSSTTCEEEEEEEEC----SSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred eEEEEEeccCCCCceeeccEecc----CCceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 9999999 3 3 33444443 267999999996544444443 4557877543
No 119
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-31 Score=244.45 Aligned_cols=261 Identities=10% Similarity=0.078 Sum_probs=199.6
Q ss_pred cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccc--cccccccc
Q psy8448 73 FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQA--QDNFMLME 150 (482)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~--~~~~~~h~ 150 (482)
.++.+.+|+.........+. ...|.++.|+|+ +++++.|++|++|+.........+.... .....+|.
T Consensus 56 ~Dg~v~iwd~~~~~~~~~~~-------~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (343)
T 3lrv_A 56 EDGALHFTQLKDSKTITTIT-------TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSA 125 (343)
T ss_dssp ETTEEEEEEESSSSCEEEEE-------EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCS
T ss_pred CCCcEEEEECCCCcEEEEEe-------cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCC
Confidence 47778888876544322221 466888889988 9999999999999876432111111110 01112356
Q ss_pred ccEEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceE
Q psy8448 151 EAVMSLAYSR--DSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKML 228 (482)
Q Consensus 151 ~~i~~l~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 228 (482)
++|.+++|+| +++++++++.||.|++||+++++........+...+.+++|+|++.+|++|+.||.|++||+++++.+
T Consensus 126 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~ 205 (343)
T 3lrv_A 126 NEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQA 205 (343)
T ss_dssp SCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSC
T ss_pred CCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCC
Confidence 8899999999 99999999999999999999998877664556678999999999999999999999999999999987
Q ss_pred -EEeec-cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCcccee--EEEEcCCCCCEEEEEeC-CC
Q psy8448 229 -KEFRG-HSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVN--SIHLLPKNTEHFVVCNK-TN 303 (482)
Q Consensus 229 -~~~~~-~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~--~i~~~~~~~~~l~~~~~-d~ 303 (482)
..+.. |..+|.+++|+|++.+|++++ ++.|++||+++++....+.....+...+. +++|+|++ .++++++. |+
T Consensus 206 ~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~l~~~s~~d~ 283 (343)
T 3lrv_A 206 SSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSG-KNMIAYSNESN 283 (343)
T ss_dssp CEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTS-SEEEEEETTTT
T ss_pred ccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCC-CEEEEecCCCC
Confidence 78887 999999999999999999999 45999999999887666653333444444 69999999 88888888 99
Q ss_pred eEEEEEcC-CcEEEEecCCcccCcCEEEEEEcC---CCCEEEEEeCCcEEEEE
Q psy8448 304 TVVIMNMQ-GQIVRSLSSGKREGGDFLCCTTSP---RGEWIYCVGEDMVLVVR 352 (482)
Q Consensus 304 ~i~i~d~~-~~~~~~~~~~~~~~~~v~~~~~~~---~g~~l~~~~~dg~i~iw 352 (482)
.+++|++. +...... .++..++|.+ ++..+++++.||.+.++
T Consensus 284 ~i~v~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 284 SLTIYKFDKKTKNWTK-------DEESALCLQSDTADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp EEEEEEECTTTCSEEE-------EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred cEEEEEEcccccceEe-------cCceeEecCccccccceeEEEecCCceEEE
Confidence 99999983 2211111 3567788888 88999999999999965
No 120
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.98 E-value=4.2e-30 Score=239.56 Aligned_cols=255 Identities=18% Similarity=0.264 Sum_probs=196.1
Q ss_pred ccccccccEEEEEEcCC---CCEEEEEeCCCcEEEEEcCC-CeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEE
Q psy8448 145 NFMLMEEAVMSLAYSRD---SEMLASGSQSGKVKIWKIAT-GQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIH 220 (482)
Q Consensus 145 ~~~~h~~~i~~l~~~~~---~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~ 220 (482)
.+.+|.+.|++++|+|+ +++|++|+.||.|++||+.+ +..+......|...|.+++|+|++++|++++.||.|++|
T Consensus 34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw 113 (368)
T 3mmy_A 34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 113 (368)
T ss_dssp CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEE
Confidence 34557899999999998 69999999999999999987 555533337899999999999999999999999999999
Q ss_pred eCCCCceEEEeeccccceeEEEE--cCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEE
Q psy8448 221 GLKSGKMLKEFRGHSSFVNDITF--TADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVV 298 (482)
Q Consensus 221 d~~~~~~~~~~~~~~~~i~~l~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~ 298 (482)
|+++++.+. +..|...|.+++| +|++++|++++.||.|++||+++++.+..+. .+ ..+.++.+.+ ..+++
T Consensus 114 d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~-~~~~~~~~~~---~~~~~ 185 (368)
T 3mmy_A 114 DLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ---LP-ERCYCADVIY---PMAVV 185 (368)
T ss_dssp ETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEE---CS-SCEEEEEEET---TEEEE
T ss_pred EcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEe---cC-CCceEEEecC---CeeEE
Confidence 999988766 5569999999999 8999999999999999999999998888875 33 3566666665 57888
Q ss_pred EeCCCeEEEEEcCCc--EEEEecCCcccCcCEEEEEEcCCCCE----EEEEeCCcEEEEEeehhhhhhhcccccceeeee
Q psy8448 299 CNKTNTVVIMNMQGQ--IVRSLSSGKREGGDFLCCTTSPRGEW----IYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQE 372 (482)
Q Consensus 299 ~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~v~~~~~~~~g~~----l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 372 (482)
++.++.+.+|+++.. ......... .....++++.++... +++++.||.+++|+++..... .....+..
T Consensus 186 ~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~----~~~~~~~~ 259 (368)
T 3mmy_A 186 ATAERGLIVYQLENQPSEFRRIESPL--KHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA----KDNFTFKC 259 (368)
T ss_dssp EEGGGCEEEEECSSSCEEEEECCCSC--SSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH----HHSEEEEC
T ss_pred EeCCCcEEEEEeccccchhhhccccc--cCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc----ccceeeee
Confidence 999999999999533 333333322 445566666655544 999999999997766522110 00001111
Q ss_pred cccceeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcce
Q psy8448 373 ETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPE 452 (482)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (482)
... . .. .. ...
T Consensus 260 ~~~-----------~-------------------~~-----------------------------~~----------~~~ 270 (368)
T 3mmy_A 260 HRS-----------N-------------------GT-----------------------------NT----------SAP 270 (368)
T ss_dssp SEE-----------C--------------------------------------------------------------CCC
T ss_pred eec-----------c-------------------cc-----------------------------cc----------ccc
Confidence 100 0 00 11 345
Q ss_pred ecccceeeccccCCcceEEEEecCceeecC
Q psy8448 453 VHEKLVIGLTHHPHQNLLGTYSEDGLLRFS 482 (482)
Q Consensus 453 ~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW 482 (482)
+|...|++++|+|++++|++|+.||.|++|
T Consensus 271 ~~~~~v~~~~~sp~~~~l~s~~~dg~i~iw 300 (368)
T 3mmy_A 271 QDIYAVNGIAFHPVHGTLATVGSDGRFSFW 300 (368)
T ss_dssp EEECCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred ccccceEEEEEecCCCEEEEEccCCeEEEE
Confidence 677789999999999999999999999998
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.98 E-value=5.2e-29 Score=234.37 Aligned_cols=254 Identities=16% Similarity=0.177 Sum_probs=203.1
Q ss_pred CCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEecCCCceeecccccccccccccccc
Q psy8448 74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYL-ITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEA 152 (482)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~ 152 (482)
++.+.+|+..... .... ..+| ..+.+++|+|++++| ++++.|+.|++||+.+++....+..+ ..
T Consensus 11 d~~v~v~d~~~~~----~~~~-~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~---------~~ 75 (391)
T 1l0q_A 11 SDNISVIDVTSNK----VTAT-IPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG---------SS 75 (391)
T ss_dssp TTEEEEEETTTTE----EEEE-EECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS---------SS
T ss_pred CCEEEEEECCCCe----EEEE-eecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC---------CC
Confidence 5667778765432 2222 2244 458999999999987 67778999999999998877655433 47
Q ss_pred EEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEE-EEEECCCeEEEEeCCCCceEEE
Q psy8448 153 VMSLAYSRDSEMLASGS-QSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQI-LTASFDTYVRIHGLKSGKMLKE 230 (482)
Q Consensus 153 i~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~ 230 (482)
+.+++|+|++++|++++ .++.|++||+.+++.+..+. +...+.+++|+|+++.+ ++++.++.|++||+++++.+..
T Consensus 76 v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 153 (391)
T 1l0q_A 76 PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK--TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT 153 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe--CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 99999999999886555 67999999999998887773 44578999999999987 6777899999999999998888
Q ss_pred eeccccceeEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEe---CCCeEE
Q psy8448 231 FRGHSSFVNDITFTADGHSV-LSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCN---KTNTVV 306 (482)
Q Consensus 231 ~~~~~~~i~~l~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~---~d~~i~ 306 (482)
+..+ ..+.+++|+|+++.+ ++++.++.|++||+++++....+. +...+.+++|+|++ ..+++++ .++.|+
T Consensus 154 ~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~----~~~~~~~~~~~~~g-~~l~~~~~~~~~~~v~ 227 (391)
T 1l0q_A 154 VSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK----VEAAPSGIAVNPEG-TKAYVTNVDKYFNTVS 227 (391)
T ss_dssp EECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE----CSSEEEEEEECTTS-SEEEEEEECSSCCEEE
T ss_pred EecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe----cCCCccceEECCCC-CEEEEEecCcCCCcEE
Confidence 8755 457999999999987 566788999999999998877764 45578999999998 6666666 789999
Q ss_pred EEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEE-EEEeCCcEEEEEee
Q psy8448 307 IMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWI-YCVGEDMVLVVRLI 354 (482)
Q Consensus 307 i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l-~~~~~dg~i~iw~~ 354 (482)
+||+ .++.+..+..+ ..+.+++|+|+|++| ++++.|+.|++|++
T Consensus 228 ~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~ 273 (391)
T 1l0q_A 228 MIDTGTNKITARIPVG----PDPAGIAVTPDGKKVYVALSFXNTVSVIDT 273 (391)
T ss_dssp EEETTTTEEEEEEECC----SSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred EEECCCCeEEEEEecC----CCccEEEEccCCCEEEEEcCCCCEEEEEEC
Confidence 9999 56666666653 357899999999988 56688999995544
No 122
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.98 E-value=9.1e-30 Score=224.71 Aligned_cols=278 Identities=12% Similarity=0.089 Sum_probs=176.7
Q ss_pred cEEEEEEcCCCC---EEEEEeCCCeEEEEecCCC---ceeeccccccccccccccccEEEEEEcCCCCE-EEEEeCCCcE
Q psy8448 102 HVECARFSPDGQ---YLITGSVDGFIEVWNFTTG---KIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEM-LASGSQSGKV 174 (482)
Q Consensus 102 ~v~~~~~s~~~~---~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~-l~~~~~dg~i 174 (482)
.+.++.|-.-+- -+++++ ...|++|+..++ +...+..+ |+.+|..+.+.||..- +.++-.+=.+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~~~~~~~~~~ 111 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHF--------AEVPVLQIVPVPDVYNLVCVALGNLEI 111 (356)
T ss_dssp EEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEEC--------CSSCEEEECCCTTCCSCEEEEECSSSE
T ss_pred EEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEec--------cCceeEEEEEcCcccceeeeeeccccc
Confidence 355666655332 456666 578999999987 44444433 3556666666664322 2222111111
Q ss_pred E-EEEc--CCC--e-EeEEeecccCCCeEEEEEccCCCEEEEEE--CCCeEEEEeC-CCCceEEEeeccccceeEEEEcC
Q psy8448 175 K-IWKI--ATG--Q-CLRKLEKAHSLGVTCIQFSRDNSQILTAS--FDTYVRIHGL-KSGKMLKEFRGHSSFVNDITFTA 245 (482)
Q Consensus 175 ~-iwd~--~~~--~-~~~~~~~~~~~~v~~i~~~~~~~~l~~~~--~dg~i~i~d~-~~~~~~~~~~~~~~~i~~l~~~~ 245 (482)
. ++-+ ... . .......+|...+..+ ++++.+.++. .|+.|++|++ .+++.+..+.+|...+..++|++
T Consensus 112 ~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~ 188 (356)
T 2w18_A 112 REIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAE 188 (356)
T ss_dssp EEEEEECC------CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEE
T ss_pred cceEEEEECCCccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeec
Confidence 1 1111 000 0 0000101222223332 3454444433 5888999998 45788888889999999999999
Q ss_pred ---CCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEE------------EEEeCCCeEEEEEc
Q psy8448 246 ---DGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHF------------VVCNKTNTVVIMNM 310 (482)
Q Consensus 246 ---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l------------~~~~~d~~i~i~d~ 310 (482)
++..|++++.|++|+|||+++++++.++.....+...+.+++|+|++ .++ ++|+.|++|++||.
T Consensus 189 ~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG-~~lvs~s~~~~~w~laSGs~D~tIklWd~ 267 (356)
T 2w18_A 189 VQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMG-LLFIVLSHPCAKESESLRSPVFQLIVINP 267 (356)
T ss_dssp EETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETT-EEEEEEC------------CCEEEEEEET
T ss_pred cCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCC-CEEEEeccCCCcceeeccCCCcEEEEEEC
Confidence 78999999999999999999999999987322233467788999988 554 56788999999999
Q ss_pred -CCcEEEEecC--CcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccc
Q psy8448 311 -QGQIVRSLSS--GKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGF 387 (482)
Q Consensus 311 -~~~~~~~~~~--~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (482)
+++.+..+.. ...+...+.+..++ +.++++++.|++|+ +||+.+|
T Consensus 268 ~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIk------------------IWDl~tG------------ 315 (356)
T 2w18_A 268 KTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIA------------------IWDLLLG------------ 315 (356)
T ss_dssp TTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEE------------------EEETTTC------------
T ss_pred CCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEE------------------EEECCCC------------
Confidence 5666554421 11223344444444 88999999999999 7777777
Q ss_pred eeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceeccccee-eccccCC
Q psy8448 388 IADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVI-GLTHHPH 466 (482)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~sp~ 466 (482)
++ .. ++.+|...+. .++||||
T Consensus 316 -------------------k~-----------------------------l~----------tL~gH~~~vvs~vafSPD 337 (356)
T 2w18_A 316 -------------------QC-----------------------------TA----------LLPPVSDQHWSFVKWSGT 337 (356)
T ss_dssp -------------------SE-----------------------------EE----------EECCC--CCCCEEEECSS
T ss_pred -------------------cE-----------------------------EE----------EecCCCCCeEEEEEECCC
Confidence 33 33 6678877655 5899999
Q ss_pred cceEEEEecCceeecC
Q psy8448 467 QNLLGTYSEDGLLRFS 482 (482)
Q Consensus 467 ~~~l~s~~~Dg~i~iW 482 (482)
|++||||+.|++||||
T Consensus 338 G~~LaSGS~D~TIklW 353 (356)
T 2w18_A 338 DSHLLAGQKDGNIFVY 353 (356)
T ss_dssp SSEEEEECTTSCEEEE
T ss_pred CCEEEEEECCCcEEEe
Confidence 9999999999999999
No 123
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.98 E-value=4.1e-30 Score=237.62 Aligned_cols=274 Identities=12% Similarity=0.183 Sum_probs=192.9
Q ss_pred CCccccccccccccccccceeeecCCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEecCCCceeecc-cccccccccccc
Q psy8448 74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSP--DGQYLITGSVDGFIEVWNFTTGKIRKDL-KYQAQDNFMLME 150 (482)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~h~ 150 (482)
++.+.+|+............ .+.+|...|++++|+| ++++|++|+.||.|++||+.+++..... .......+..|.
T Consensus 32 dg~i~iw~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 110 (351)
T 3f3f_A 32 DQHIKVFKLDKDTSNWELSD-SWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSK 110 (351)
T ss_dssp TSEEEEEEECSSSCCEEEEE-EEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCS
T ss_pred CCeEEEEECCCCCCcceecc-eeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccC
Confidence 67788998775544333333 3348999999999999 6999999999999999999887532110 011223344578
Q ss_pred ccEEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCeEeEEee------------cccCCCeEEEEEccC---CCEEEEEEC
Q psy8448 151 EAVMSLAYSRD--SEMLASGSQSGKVKIWKIATGQCLRKLE------------KAHSLGVTCIQFSRD---NSQILTASF 213 (482)
Q Consensus 151 ~~i~~l~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~------------~~~~~~v~~i~~~~~---~~~l~~~~~ 213 (482)
..|.+++|+|+ +++|++++.||.|++||+++++.+..+. ..+...+.+++|+|+ +.++++++.
T Consensus 111 ~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 190 (351)
T 3f3f_A 111 GSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSAL 190 (351)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEET
T ss_pred CceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecC
Confidence 99999999999 9999999999999999998876543331 257788999999997 899999999
Q ss_pred CCeEEEEeCCCCce--EEEeeccccceeEEEEcCCC----CEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEE
Q psy8448 214 DTYVRIHGLKSGKM--LKEFRGHSSFVNDITFTADG----HSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIH 287 (482)
Q Consensus 214 dg~i~i~d~~~~~~--~~~~~~~~~~i~~l~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~ 287 (482)
++.+.+|+...++. +..+.+|...|.+++|+|++ ++|++++.||.|++||++++....... ..........
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~ 267 (351)
T 3f3f_A 191 EQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASE---ESLTNSNMFD 267 (351)
T ss_dssp TEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-------------------
T ss_pred CCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccC---CcccceeccC
Confidence 99998888887765 67788899999999999998 899999999999999998765443332 2222223333
Q ss_pred EcCCCCCEEEEE----eCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448 288 LLPKNTEHFVVC----NKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ 355 (482)
Q Consensus 288 ~~~~~~~~l~~~----~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~ 355 (482)
..+.. .....+ .....+.+|+. ..+.+..+..+ ...|++++|+|++++|++++.||.|++|++.
T Consensus 268 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 336 (351)
T 3f3f_A 268 NSADV-DMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH---NGEVWSVSWNLTGTILSSAGDDGKVRLWKAT 336 (351)
T ss_dssp ------------------------CCSEEEEEEEEECTT---SSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CCccc-ccccccccccccceeeeecccccccEEEEEecc---cccEEEEEEcCCCCEEEEecCCCcEEEEecC
Confidence 33322 222222 22334445544 34555555544 7889999999999999999999999966654
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=2.9e-28 Score=232.53 Aligned_cols=261 Identities=12% Similarity=0.114 Sum_probs=210.3
Q ss_pred CccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEE
Q psy8448 75 GKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVM 154 (482)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~ 154 (482)
+.+.+|+................+|...|.+++|+|+++++++++.|+.|++||+.+++....+.. |...+.
T Consensus 144 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~--------~~~~~~ 215 (433)
T 3bws_A 144 EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDL--------TGKWSK 215 (433)
T ss_dssp SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEEC--------SSSSEE
T ss_pred CeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcC--------CCCCee
Confidence 457778765443322111113348999999999999999999999999999999998877665542 467899
Q ss_pred EEEEcCCCCEEEEEe-CCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEE--------CCCeEEEEeCCCC
Q psy8448 155 SLAYSRDSEMLASGS-QSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTAS--------FDTYVRIHGLKSG 225 (482)
Q Consensus 155 ~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~--------~dg~i~i~d~~~~ 225 (482)
+++|+|+++++++++ .|+.|++||+.+++....+. ....+.+++|+|+++++++++ .|+.|++||++++
T Consensus 216 ~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~ 293 (433)
T 3bws_A 216 ILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD--KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE 293 (433)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC--CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT
T ss_pred EEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec--CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC
Confidence 999999999886554 79999999999998887763 345699999999999999888 5889999999999
Q ss_pred ceEEEeeccccceeEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeC---
Q psy8448 226 KMLKEFRGHSSFVNDITFTADGHSV-LSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK--- 301 (482)
Q Consensus 226 ~~~~~~~~~~~~i~~l~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~--- 301 (482)
+.+..+. +...+.+++|+|+++.+ ++++.++.|++||+++++....+. +...+.+++|+|++ ..+++++.
T Consensus 294 ~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~----~~~~~~~~~~s~dg-~~l~~~~~~~~ 367 (433)
T 3bws_A 294 KLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP----VFDKPNTIALSPDG-KYLYVSCRGPN 367 (433)
T ss_dssp EEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE----CSSSEEEEEECTTS-SEEEEEECCCC
T ss_pred cEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec----CCCCCCeEEEcCCC-CEEEEEecCCC
Confidence 8776653 56688999999999755 556889999999999988877763 45678999999998 66666665
Q ss_pred ------------CCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeC-CcEEEEEeeh
Q psy8448 302 ------------TNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGE-DMVLVVRLIQ 355 (482)
Q Consensus 302 ------------d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~-dg~i~iw~~~ 355 (482)
||.|++||. +++.+..+.. ...+.+++|+|+|++|++++. |+.|++|+++
T Consensus 368 ~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 368 HPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA----GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp CTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC----SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred ccccccccccccceEEEEEECCCCcEEEEecC----CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 579999999 5666666654 356899999999999998875 9999988765
No 125
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=3.8e-29 Score=231.50 Aligned_cols=228 Identities=9% Similarity=0.096 Sum_probs=178.4
Q ss_pred ccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEE-EEEECCCeEEEEeCCCC
Q psy8448 147 MLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQI-LTASFDTYVRIHGLKSG 225 (482)
Q Consensus 147 ~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~~~~~dg~i~i~d~~~~ 225 (482)
..|...|++++|+|++++|++|+.++ +++||+.+++...... ...+..+++.++++.+ ++++.|+.|++||++++
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~ 91 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQE---MRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK 91 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEE---CSCCCEEEECTTSSEEEEECSSTTEEEEEETTTT
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeee---cCCeEEEEEcCCCCEEEEEECCccEEEEEECCCC
Confidence 34688999999999999999988775 7899998877665542 2257888898888877 56777899999999999
Q ss_pred ceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeeeeeccCCCccceeEEEEcCCCCCEEEE--EeCC
Q psy8448 226 KMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTT-ECTSTFKSLGASDIAVNSIHLLPKNTEHFVV--CNKT 302 (482)
Q Consensus 226 ~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~--~~~d 302 (482)
+.+..+. +...|.+++++++. ++++ .++.|++||+.++ +.+..+. . +...+++++ ..+++ ++.+
T Consensus 92 ~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~---~---~~~~~~~s~---~~la~~sg~~~ 158 (355)
T 3vu4_A 92 QDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDI---R---FGGVCEFSN---GLLVYSNEFNL 158 (355)
T ss_dssp EEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCE---E---EEEEEEEET---TEEEEEESSCT
T ss_pred cEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEec---c---CCceEEEEc---cEEEEeCCCcC
Confidence 9998887 67789999998763 4444 4789999999988 6666654 2 444556666 34554 5889
Q ss_pred CeEEEEEcCCcE-----------------EEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcE-EEEEeehhhhhhhccc
Q psy8448 303 NTVVIMNMQGQI-----------------VRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMV-LVVRLIQQYLKESNLM 364 (482)
Q Consensus 303 ~~i~i~d~~~~~-----------------~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~-i~iw~~~~~~~~~~~~ 364 (482)
|.|++||+.... +..+..| ...|.+++|+|+|++|++|+.|+. |+
T Consensus 159 g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h---~~~v~~~~~s~~g~~l~s~s~d~~~v~-------------- 221 (355)
T 3vu4_A 159 GQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH---TNPIKMVRLNRKSDMVATCSQDGTIIR-------------- 221 (355)
T ss_dssp TCEEEEECCC------------------CCEEECCC---SSCEEEEEECTTSSEEEEEETTCSEEE--------------
T ss_pred cEEEEEECCCCCccccccccccccccCcccEEEEcc---CCceEEEEECCCCCEEEEEeCCCCEEE--------------
Confidence 999999995322 4455544 789999999999999999999998 99
Q ss_pred ccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCccc
Q psy8448 365 KTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMI 444 (482)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (482)
+|+..++ +. ..
T Consensus 222 ----iwd~~~~-------------------------------~~-----------------------------~~----- 232 (355)
T 3vu4_A 222 ----VFKTEDG-------------------------------VL-----------------------------VR----- 232 (355)
T ss_dssp ----EEETTTC-------------------------------CE-----------------------------EE-----
T ss_pred ----EEECCCC-------------------------------cE-----------------------------EE-----
Confidence 5666555 22 22
Q ss_pred ccccCcce-e-cccceeeccccCCcceEEEEecCceeecC
Q psy8448 445 FMKQHEPE-V-HEKLVIGLTHHPHQNLLGTYSEDGLLRFS 482 (482)
Q Consensus 445 ~~~~~~~~-~-h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW 482 (482)
.+. + |...|++++|+|++++|++++.||+|+||
T Consensus 233 -----~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw 267 (355)
T 3vu4_A 233 -----EFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVF 267 (355)
T ss_dssp -----EEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEE
T ss_pred -----EEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEE
Confidence 444 4 88999999999999999999999999998
No 126
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=2.9e-28 Score=215.21 Aligned_cols=269 Identities=14% Similarity=0.052 Sum_probs=179.4
Q ss_pred eeccCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEe--CCCeEEEEecC--CC-ceeecccccccc
Q psy8448 70 IDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGS--VDGFIEVWNFT--TG-KIRKDLKYQAQD 144 (482)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~--~dg~v~iwd~~--~~-~~~~~~~~~~~~ 144 (482)
+......+.+|...... .=. ..+...+|..+|..+.+.||..-|+... .=..-.++-+. .. +.......
T Consensus 58 ~~~~~~~v~lw~~~~~~-~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~---- 131 (356)
T 2w18_A 58 ITACEDVVSLWKALDAW-QWE-KLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLL---- 131 (356)
T ss_dssp EEEESSEEEEEEESSSS-BEE-EEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEE----
T ss_pred EEeccceEEEcccCCCc-cce-eeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEE----
Confidence 44456667777765531 112 2234448888888888888654333221 11111111111 00 00000000
Q ss_pred ccccccccEEEEEEcCCCCEEEEEe--CCCcEEEEEc-CCCeEeEEeecccCCCeEEEEEcc---CCCEEEEEECCCeEE
Q psy8448 145 NFMLMEEAVMSLAYSRDSEMLASGS--QSGKVKIWKI-ATGQCLRKLEKAHSLGVTCIQFSR---DNSQILTASFDTYVR 218 (482)
Q Consensus 145 ~~~~h~~~i~~l~~~~~~~~l~~~~--~dg~i~iwd~-~~~~~~~~~~~~~~~~v~~i~~~~---~~~~l~~~~~dg~i~ 218 (482)
..+|...|..+ ++++++.+++ .|+.|++|++ .+++.+..+ ..|...+..++|++ ++..|++++.|++|+
T Consensus 132 -s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~-~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIk 206 (356)
T 2w18_A 132 -KSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQ-FLMPPEETILTFAEVQGMQEALLGTTIMNNIV 206 (356)
T ss_dssp -EEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEE-EECCCSSCEEEEEEEETSTTEEEEEETTSEEE
T ss_pred -eCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeee-ccCCCceeeEEeeccCCCCceEEEecCCCcEE
Confidence 01123334443 4565555543 5999999999 457777766 57888999999999 779999999999999
Q ss_pred EEeCCCCceEEEeecccc---ceeEEEEcCCCCEE------------EEEeCCCcEEEEECCCCceeeeeec--cCCCcc
Q psy8448 219 IHGLKSGKMLKEFRGHSS---FVNDITFTADGHSV------------LSASSDGTVKMWNLKTTECTSTFKS--LGASDI 281 (482)
Q Consensus 219 i~d~~~~~~~~~~~~~~~---~i~~l~~~~~~~~l------------~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~ 281 (482)
+||++++++++++.+|.. .+.+++|+|++.++ ++|+.|++|++||..+++.+..+.. ..+|..
T Consensus 207 IWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~ 286 (356)
T 2w18_A 207 IWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAG 286 (356)
T ss_dssp EEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCC
T ss_pred EEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcc
Confidence 999999999999986543 57788999999876 5677899999999999987765421 124444
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448 282 AVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLI 354 (482)
Q Consensus 282 ~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~ 354 (482)
.+.+..++ + .++++++.|++|+|||+ +++.+.++..+. ...+.+++|+|||++|++|+.|++|+||++
T Consensus 287 ~~lsg~~s--g-~~lASgS~DgTIkIWDl~tGk~l~tL~gH~--~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 287 RFLEGDVK--D-HCAAAILTSGTIAIWDLLLGQCTALLPPVS--DQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CEEEEEEE--T-TEEEEEETTSCEEEEETTTCSEEEEECCC----CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred eeEccccC--C-CEEEEEcCCCcEEEEECCCCcEEEEecCCC--CCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 44444444 4 68999999999999999 688888887653 223446899999999999999999998864
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=5.8e-27 Score=221.23 Aligned_cols=272 Identities=15% Similarity=0.091 Sum_probs=197.2
Q ss_pred hhhhhccCCCC-CCceeeccCC----ccccccc--cccccccccceeeecCCCCcEEEEEEcC--------------CCC
Q psy8448 55 LKWQQHQGLLP-PGTTIDLFRG----KAAMKDQ--EEEKYPTQLSKQIKFGSKSHVECARFSP--------------DGQ 113 (482)
Q Consensus 55 ~~~~~~~~~~~-~g~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~h~~~v~~~~~s~--------------~~~ 113 (482)
.+|.....-.. .|......+| .+.+|+. .... .+....+.+|...+..+++++ .+.
T Consensus 68 ~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~ 144 (415)
T 2hqs_A 68 AAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGT---VLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRT 144 (415)
T ss_dssp HHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTC---EEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTC
T ss_pred HHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCC---EEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCC
Confidence 45665443322 3332222344 6788887 4433 222233458888888888775 155
Q ss_pred EEEEEeCC------CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCeE
Q psy8448 114 YLITGSVD------GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSG---KVKIWKIATGQC 184 (482)
Q Consensus 114 ~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg---~i~iwd~~~~~~ 184 (482)
.++.++.+ +.|++||+..+. ... +.+|...+.+++|+|+|++|++++.++ .|++||+.+++.
T Consensus 145 ~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~--------l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~ 215 (415)
T 2hqs_A 145 RIAYVVQTNGGQFPYELRVSDYDGYN-QFV--------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV 215 (415)
T ss_dssp EEEEEEECSSSSCCEEEEEEETTSCS-CEE--------EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE
T ss_pred EEEEEEecCCCCccceEEEEcCCCCC-CEE--------EeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE
Confidence 66666544 799999997433 222 233568899999999999999999875 999999998877
Q ss_pred eEEeecccCCCeEEEEEccCCCEEE-EEECCC--eEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeC-CC--c
Q psy8448 185 LRKLEKAHSLGVTCIQFSRDNSQIL-TASFDT--YVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASS-DG--T 258 (482)
Q Consensus 185 ~~~~~~~~~~~v~~i~~~~~~~~l~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-dg--~ 258 (482)
.. + ..+...+.+++|+|+|++|+ +++.++ .|++||+++++. ..+..|...+.+++|+|+|++|++++. ++ .
T Consensus 216 ~~-l-~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~ 292 (415)
T 2hqs_A 216 RQ-V-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQ 292 (415)
T ss_dssp EE-E-ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred EE-e-ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcE
Confidence 54 3 45778899999999999888 565555 499999988876 567778889999999999999998886 44 6
Q ss_pred EEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC---CeEEEEEcCCcEEEEecCCcccCcCEEEEEEcC
Q psy8448 259 VKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT---NTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSP 335 (482)
Q Consensus 259 i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 335 (482)
|.+||+.+++... +. .+...+.+++|+|++ +++++++.+ ..|.+||+.+.....+..+ ..+.+++|+|
T Consensus 293 i~~~d~~~~~~~~-l~---~~~~~~~~~~~spdG-~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~----~~~~~~~~sp 363 (415)
T 2hqs_A 293 VYKVNINGGAPQR-IT---WEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGGVQVLSST----FLDETPSLAP 363 (415)
T ss_dssp EEEEETTSSCCEE-CC---CSSSEEEEEEECTTS-SEEEEEEECSSCEEEEEEETTTCCEEECCCS----SSCEEEEECT
T ss_pred EEEEECCCCCEEE-Ee---cCCCcccCeEECCCC-CEEEEEECcCCceEEEEEECCCCCEEEecCC----CCcCCeEEcC
Confidence 7888998876432 22 456688899999999 666665543 5899999965444555543 2789999999
Q ss_pred CCCEEEEEeCCc---EEE
Q psy8448 336 RGEWIYCVGEDM---VLV 350 (482)
Q Consensus 336 ~g~~l~~~~~dg---~i~ 350 (482)
+|++|++++.++ .|+
T Consensus 364 dg~~l~~~s~~~~~~~l~ 381 (415)
T 2hqs_A 364 NGTMVIYSSSQGMGSVLN 381 (415)
T ss_dssp TSSEEEEEEEETTEEEEE
T ss_pred CCCEEEEEEcCCCccEEE
Confidence 999999888766 566
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=2.7e-27 Score=223.48 Aligned_cols=234 Identities=13% Similarity=0.197 Sum_probs=173.9
Q ss_pred CCcEEEEEEcCCC-CEEEEEe----CCC----eEEEEec--CCCceeeccccccccccccccccEEEEEEcC--------
Q psy8448 100 KSHVECARFSPDG-QYLITGS----VDG----FIEVWNF--TTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR-------- 160 (482)
Q Consensus 100 ~~~v~~~~~s~~~-~~l~s~~----~dg----~v~iwd~--~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~-------- 160 (482)
...+...+|++.| +++++|+ .+| .|++||+ .+++.+.... +.+|...+..+++++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~d~~~~~~ 135 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNS------YKVNKQWLRYAGHTASDEVFEKL 135 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEE------EEECGGGHHHHHHHHHHHHHHHH
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeE------EEcChhHHHHHHHHHHHHHHHHH
Confidence 3567788898876 4566776 567 8999999 8887653321 122344555555553
Q ss_pred ------CCCEEEEEeCC------CcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCC---eEEEEeCCCC
Q psy8448 161 ------DSEMLASGSQS------GKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDT---YVRIHGLKSG 225 (482)
Q Consensus 161 ------~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg---~i~i~d~~~~ 225 (482)
.+..++.++.+ +.|++||+.. .....+ ..|...+.+++|+|+|++|++++.++ .|++||++++
T Consensus 136 ~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l-~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg 213 (415)
T 2hqs_A 136 TGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVV-HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG 213 (415)
T ss_dssp HSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEE-EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred cCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEE-eCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC
Confidence 25667766654 7999999974 445555 56888999999999999999999885 9999999998
Q ss_pred ceEEEeeccccceeEEEEcCCCCEEE-EEeCCCc--EEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeC-
Q psy8448 226 KMLKEFRGHSSFVNDITFTADGHSVL-SASSDGT--VKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK- 301 (482)
Q Consensus 226 ~~~~~~~~~~~~i~~l~~~~~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~- 301 (482)
+.. .+..|...+.+++|+|+|+.|+ +++.++. |++||+++++.. .+. .+...+.+++|+|++ ..+++++.
T Consensus 214 ~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l~---~~~~~~~~~~~spdg-~~l~~~s~~ 287 (415)
T 2hqs_A 214 AVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVT---DGRSNNTEPTWFPDS-QNLAFTSDQ 287 (415)
T ss_dssp CEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECC---CCSSCEEEEEECTTS-SEEEEEECT
T ss_pred cEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eCc---CCCCcccceEECCCC-CEEEEEECC
Confidence 875 4666888999999999999888 5665554 999999988753 333 667789999999999 66666664
Q ss_pred CC--eEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCC---cEEE
Q psy8448 302 TN--TVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGED---MVLV 350 (482)
Q Consensus 302 d~--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~d---g~i~ 350 (482)
++ .|.+||+.+.....+..+ ...+.+++|+|+|++|++++.+ ..|+
T Consensus 288 ~g~~~i~~~d~~~~~~~~l~~~---~~~~~~~~~spdG~~l~~~~~~~g~~~i~ 338 (415)
T 2hqs_A 288 AGRPQVYKVNINGGAPQRITWE---GSQNQDADVSSDGKFMVMVSSNGGQQHIA 338 (415)
T ss_dssp TSSCEEEEEETTSSCCEECCCS---SSEEEEEEECTTSSEEEEEEECSSCEEEE
T ss_pred CCCcEEEEEECCCCCEEEEecC---CCcccCeEECCCCCEEEEEECcCCceEEE
Confidence 45 677788865444444433 4578899999999999988764 4666
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=8.7e-26 Score=219.58 Aligned_cols=259 Identities=17% Similarity=0.209 Sum_probs=195.4
Q ss_pred CCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEec--CCCceeeccccccccccccccc
Q psy8448 74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNF--TTGKIRKDLKYQAQDNFMLMEE 151 (482)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~--~~~~~~~~~~~~~~~~~~~h~~ 151 (482)
++.+.+|+.... +....+..+|. +.+++|+|||++|++++.|++|.+||+ .+++.+..+.. ..
T Consensus 158 d~~V~v~D~~t~----~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~---------g~ 222 (543)
T 1nir_A 158 AGQIALVDGDSK----KIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI---------GI 222 (543)
T ss_dssp GTEEEEEETTTC----CEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC---------CS
T ss_pred CCeEEEEECCCc----eEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec---------CC
Confidence 345666664432 23344444554 889999999999999999999999999 77776665542 24
Q ss_pred cEEEEEEcC----CCCEEEEEe-CCCcEEEEEcCCCeEeEEeecc---------c-CCCeEEEEEccCCCE-EEEEECCC
Q psy8448 152 AVMSLAYSR----DSEMLASGS-QSGKVKIWKIATGQCLRKLEKA---------H-SLGVTCIQFSRDNSQ-ILTASFDT 215 (482)
Q Consensus 152 ~i~~l~~~~----~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~---------~-~~~v~~i~~~~~~~~-l~~~~~dg 215 (482)
.+..++|+| +|+++++++ .+++|.+||..+++.+..+... | ...+..+.++|++.. +++...++
T Consensus 223 ~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g 302 (543)
T 1nir_A 223 EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG 302 (543)
T ss_dssp EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCC
Confidence 679999999 999999988 4899999999999988877421 2 236899999997665 55667789
Q ss_pred eEEEEeCCCCceEE--EeeccccceeEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeeeeeccC-CCccceeEEEEcCC
Q psy8448 216 YVRIHGLKSGKMLK--EFRGHSSFVNDITFTADGHSVLSAS-SDGTVKMWNLKTTECTSTFKSLG-ASDIAVNSIHLLPK 291 (482)
Q Consensus 216 ~i~i~d~~~~~~~~--~~~~~~~~i~~l~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~-~~~~~v~~i~~~~~ 291 (482)
.|.+||..+.+.+. .+. +...+.++.|+|++++|++++ .+++|.+||..++++...+.... .|......+ ++|+
T Consensus 303 ~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~ 380 (543)
T 1nir_A 303 KVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPK 380 (543)
T ss_dssp EEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETT
T ss_pred eEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCC
Confidence 99999998876544 343 566788999999999877665 58899999999999888776311 233323333 4777
Q ss_pred CCCEEEEEe-CCCeEEEEEc-C-------CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEe-------CCcEEEEE
Q psy8448 292 NTEHFVVCN-KTNTVVIMNM-Q-------GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVG-------EDMVLVVR 352 (482)
Q Consensus 292 ~~~~l~~~~-~d~~i~i~d~-~-------~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~-------~dg~i~iw 352 (482)
+..+++++. .|++|.+||. . ++.+.++..+ ...+..++++|+|++|++++ .++.|.+|
T Consensus 381 ~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~---g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~ 454 (543)
T 1nir_A 381 YGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ---GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVF 454 (543)
T ss_dssp TEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS---CSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEE
T ss_pred CccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcC---CCCceEEEcCCCCCcEEEecCCCCCcccCceEEEE
Confidence 546777775 6899999999 4 6788888765 45567899999999999987 26788833
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=1.8e-25 Score=217.37 Aligned_cols=234 Identities=12% Similarity=0.104 Sum_probs=180.3
Q ss_pred EEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEc--CCCeE
Q psy8448 107 RFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKI--ATGQC 184 (482)
Q Consensus 107 ~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~--~~~~~ 184 (482)
.|+|++.++++++.|++|.+||..+++.+..+... ..+..++|+|++++|++++.|+.|.+||+ .+++.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g---------~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~ 214 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG---------YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK 214 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECS---------TTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecC---------cccceEEECCCCCEEEEECCCCeEEEEECcCCCCcE
Confidence 48899999999999999999999999988776533 12889999999999999999999999999 88888
Q ss_pred eEEeecccCCCeEEEEEcc----CCCEEEEEEC-CCeEEEEeCCCCceEEEeecc-----------ccceeEEEEcCCCC
Q psy8448 185 LRKLEKAHSLGVTCIQFSR----DNSQILTASF-DTYVRIHGLKSGKMLKEFRGH-----------SSFVNDITFTADGH 248 (482)
Q Consensus 185 ~~~~~~~~~~~v~~i~~~~----~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~-----------~~~i~~l~~~~~~~ 248 (482)
+..+. +...+..++|+| +|+++++++. ++.|.+||..+++++..+..+ ...+.++.++|++.
T Consensus 215 ~~~i~--~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~ 292 (543)
T 1nir_A 215 VAEIK--IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHP 292 (543)
T ss_dssp EEEEE--CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSS
T ss_pred EEEEe--cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCC
Confidence 88874 455689999999 9999998884 899999999999998887642 22688999999776
Q ss_pred EE-EEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcc-cC
Q psy8448 249 SV-LSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKR-EG 325 (482)
Q Consensus 249 ~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~-~~ 325 (482)
.+ ++...++.|.+||+.+.+...... . .+...+..+.|+|++..+++++..+++|.+||. +++.+..+..... |.
T Consensus 293 ~~~vs~~~~g~i~vvd~~~~~~l~~~~-i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~ 370 (543)
T 1nir_A 293 EFIVNVKETGKVLLVNYKDIDNLTVTS-I-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHP 370 (543)
T ss_dssp EEEEEETTTTEEEEEECTTSSSCEEEE-E-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCC
T ss_pred EEEEEECCCCeEEEEEecCCCcceeEE-e-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCC
Confidence 54 556678999999998876544111 1 234567889999999444555667899999999 6777777764321 23
Q ss_pred cCEEEEEEcCC-CCEEEEEe-CCcEEEEEee
Q psy8448 326 GDFLCCTTSPR-GEWIYCVG-EDMVLVVRLI 354 (482)
Q Consensus 326 ~~v~~~~~~~~-g~~l~~~~-~dg~i~iw~~ 354 (482)
+....+ ++|+ |..++++. .|+.|.+|+.
T Consensus 371 g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~ 400 (543)
T 1nir_A 371 GRGANF-VHPKYGPVWSTSHLGDGSISLIGT 400 (543)
T ss_dssp TTCEEE-EETTTEEEEEEEBSSSSEEEEEEC
T ss_pred CCCccc-CCCCCccEEEeccCCCceEEEEEe
Confidence 333333 4777 55566665 5899995443
No 131
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.95 E-value=1.2e-24 Score=201.45 Aligned_cols=239 Identities=12% Similarity=0.144 Sum_probs=189.3
Q ss_pred CCCcEEEEEEcCCCCEEEEEeC-------CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEE-eC
Q psy8448 99 SKSHVECARFSPDGQYLITGSV-------DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASG-SQ 170 (482)
Q Consensus 99 h~~~v~~~~~s~~~~~l~s~~~-------dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~-~~ 170 (482)
....+..++|+|+++++++++. ++.|.+||..+++....+... ..+..++|+|++++++++ ..
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~---------~~~~~~~~s~dg~~l~v~~~~ 109 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND---------LKPFGATINNTTQTLWFGNTV 109 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES---------SCCCSEEEETTTTEEEEEETT
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC---------CCcceEEECCCCCEEEEEecC
Confidence 3456889999999999888774 568999999999877766543 347789999999966555 45
Q ss_pred CCcEEEEEcCCCeEeEEeecccCC--------CeEEEEEccCCCEEEEEE--CCCeEEEEeCCCCceEEEeeccccceeE
Q psy8448 171 SGKVKIWKIATGQCLRKLEKAHSL--------GVTCIQFSRDNSQILTAS--FDTYVRIHGLKSGKMLKEFRGHSSFVND 240 (482)
Q Consensus 171 dg~i~iwd~~~~~~~~~~~~~~~~--------~v~~i~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~ 240 (482)
++.|.+||+.+++....+...... .+.+++|+|+++++++++ .++.|.+||+++++.+..+..+...+.+
T Consensus 110 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 189 (353)
T 3vgz_A 110 NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTG 189 (353)
T ss_dssp TTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCC
T ss_pred CCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccce
Confidence 799999999999988877432222 278899999999888776 4788999999999988888766667899
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccC-CCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEe
Q psy8448 241 ITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLG-ASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSL 318 (482)
Q Consensus 241 l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~ 318 (482)
++|+|+++++++++.++.|.+||+.+++....+.... ++...+..++|+|++..++++...++.|.+||. +++.+..+
T Consensus 190 ~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 269 (353)
T 3vgz_A 190 LALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKV 269 (353)
T ss_dssp CEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 9999999999999999999999999998877765321 245567889999999445555556699999999 67777766
Q ss_pred cCCcccCcCEEEEEEcCCCCEEEEEe-CCcEEEE
Q psy8448 319 SSGKREGGDFLCCTTSPRGEWIYCVG-EDMVLVV 351 (482)
Q Consensus 319 ~~~~~~~~~v~~~~~~~~g~~l~~~~-~dg~i~i 351 (482)
.... ...++|+|+|+++++++ .++.|.+
T Consensus 270 ~~~~-----~~~~~~s~dg~~l~v~~~~~~~v~~ 298 (353)
T 3vgz_A 270 AAPE-----SLAVLFNPARNEAYVTHRQAGKVSV 298 (353)
T ss_dssp ECSS-----CCCEEEETTTTEEEEEETTTTEEEE
T ss_pred EcCC-----CceEEECCCCCEEEEEECCCCeEEE
Confidence 6432 25689999999777665 6899993
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.95 E-value=6e-26 Score=231.54 Aligned_cols=248 Identities=11% Similarity=0.063 Sum_probs=182.9
Q ss_pred CCcEEEEEEcCCCCEEEEEeC-CC-----eEEEEecCCCceeeccccccccc-----------c-----ccccccEEEEE
Q psy8448 100 KSHVECARFSPDGQYLITGSV-DG-----FIEVWNFTTGKIRKDLKYQAQDN-----------F-----MLMEEAVMSLA 157 (482)
Q Consensus 100 ~~~v~~~~~s~~~~~l~s~~~-dg-----~v~iwd~~~~~~~~~~~~~~~~~-----------~-----~~h~~~i~~l~ 157 (482)
...|.+++|||||++|++++. |+ .|++||+.+++....+..+.... . ......+.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 457999999999999999998 88 99999999988665544321100 0 00003478999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCCe--EeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccc
Q psy8448 158 YSRDSEMLASGSQSGKVKIWKIATGQ--CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHS 235 (482)
Q Consensus 158 ~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 235 (482)
|+|||++|++++. +.|.+||+.++. ....+ ..+...+.+++|+|||++|++++ ++.|++||+.+++.......+.
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l-~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~ 192 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQL-THGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGS 192 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBC-CCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEc-ccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCc
Confidence 9999999999886 899999998872 33344 45777899999999999999988 5699999999887665544333
Q ss_pred cc----------------eeEEEEcCCCCEEEEEeCCC---------------------------------cEEEEECCC
Q psy8448 236 SF----------------VNDITFTADGHSVLSASSDG---------------------------------TVKMWNLKT 266 (482)
Q Consensus 236 ~~----------------i~~l~~~~~~~~l~~~~~dg---------------------------------~i~i~d~~~ 266 (482)
.. +.+++|+|||++|++++.|+ .|.+||+.+
T Consensus 193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 272 (741)
T 2ecf_A 193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAE 272 (741)
T ss_dssp SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSST
T ss_pred cceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCC
Confidence 32 47899999999999987665 789999988
Q ss_pred -CceeeeeeccCCCccceeEEEEcCCCCCEEEEEe-----CCCeEEEEEc-CCcEEEEecCCccc-CcCEEEEEEcCCCC
Q psy8448 267 -TECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCN-----KTNTVVIMNM-QGQIVRSLSSGKRE-GGDFLCCTTSPRGE 338 (482)
Q Consensus 267 -~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-----~d~~i~i~d~-~~~~~~~~~~~~~~-~~~v~~~~~~~~g~ 338 (482)
++...... ...+...+..++| |+| +.+++++ .+..|++||. +++....+..+... ...+..++|+|||+
T Consensus 273 ~~~~~~~~~-~~~~~~~~~~~~~-pDg-~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~ 349 (741)
T 2ecf_A 273 QAQTQWIDL-GKEQDIYLARVNW-RDP-QHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGS 349 (741)
T ss_dssp TCCCEEECC-CSCSSEEEEEEEE-EET-TEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSC
T ss_pred CCceEEecC-CCCcceEEEEEEe-CCC-CEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCe
Confidence 77544322 1136678999999 999 5565544 2567999999 45544444322100 01345789999999
Q ss_pred EEEEEeCCcEEEEEe
Q psy8448 339 WIYCVGEDMVLVVRL 353 (482)
Q Consensus 339 ~l~~~~~dg~i~iw~ 353 (482)
++++++.||.+.||.
T Consensus 350 ~~~~~~~~g~~~l~~ 364 (741)
T 2ecf_A 350 ILWSSERTGFQHLYR 364 (741)
T ss_dssp EEEEECTTSSCEEEE
T ss_pred EEEEecCCCccEEEE
Confidence 999999999888663
No 133
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.94 E-value=7.4e-25 Score=202.00 Aligned_cols=231 Identities=14% Similarity=0.215 Sum_probs=160.5
Q ss_pred EEEEEeCCCeEEEEecCC-CceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC-CcEEEEEcC--CCeE--eEE
Q psy8448 114 YLITGSVDGFIEVWNFTT-GKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS-GKVKIWKIA--TGQC--LRK 187 (482)
Q Consensus 114 ~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d-g~i~iwd~~--~~~~--~~~ 187 (482)
++++++.|+.|++|++.. ++....... .|...+.+++|+|++++|++++.+ +.|.+|++. +++. +..
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~ 79 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV-------DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAE 79 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-------ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE-------ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccc
Confidence 344557899999999963 322211111 135678899999999999998876 999999997 5543 333
Q ss_pred eecccCCCeEEEEEccCCCEEEEEEC-CCeEEEEeCC---CCceEEEeeccccceeEEEEcCCCCEEEEEe-CCCcEEEE
Q psy8448 188 LEKAHSLGVTCIQFSRDNSQILTASF-DTYVRIHGLK---SGKMLKEFRGHSSFVNDITFTADGHSVLSAS-SDGTVKMW 262 (482)
Q Consensus 188 ~~~~~~~~v~~i~~~~~~~~l~~~~~-dg~i~i~d~~---~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~dg~i~i~ 262 (482)
+. ....+..++|+|+++++++++. ++.|.+||+. ..+....+.. ...+.+++|+|+++++++++ .++.|.+|
T Consensus 80 ~~--~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~ 156 (343)
T 1ri6_A 80 SA--LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLF 156 (343)
T ss_dssp EE--CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEE
T ss_pred cc--cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEE
Confidence 32 2337889999999998877765 8899999994 3344444443 34588999999999888887 88999999
Q ss_pred ECCC-Cceeeee--eccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC---CcE--EEEec---CCcccCcCEEEE
Q psy8448 263 NLKT-TECTSTF--KSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ---GQI--VRSLS---SGKREGGDFLCC 331 (482)
Q Consensus 263 d~~~-~~~~~~~--~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~---~~~--~~~~~---~~~~~~~~v~~~ 331 (482)
|+.+ ++..... .........+..++|+|++..+++++..++.|.+|+++ +.. ..... ........+..+
T Consensus 157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 236 (343)
T 1ri6_A 157 TVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADI 236 (343)
T ss_dssp EECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEE
T ss_pred EecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccce
Confidence 9987 5543221 11112345678899999994345555688999999993 221 22222 111123456789
Q ss_pred EEcCCCCEEEEE-eCCcEEEEEee
Q psy8448 332 TTSPRGEWIYCV-GEDMVLVVRLI 354 (482)
Q Consensus 332 ~~~~~g~~l~~~-~~dg~i~iw~~ 354 (482)
+|+|+|++|+++ ..++.|.+|++
T Consensus 237 ~~s~dg~~l~v~~~~~~~i~v~d~ 260 (343)
T 1ri6_A 237 HITPDGRHLYACDRTASLITVFSV 260 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEE
T ss_pred EECCCCCEEEEEecCCCEEEEEEE
Confidence 999999988854 47899996554
No 134
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=3.4e-24 Score=196.65 Aligned_cols=232 Identities=10% Similarity=0.096 Sum_probs=169.4
Q ss_pred EEcCCCCE-EEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCeE
Q psy8448 107 RFSPDGQY-LITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ-SGKVKIWKIATGQC 184 (482)
Q Consensus 107 ~~s~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~-dg~i~iwd~~~~~~ 184 (482)
.|.+++++ +++++.++.|.+||+.+++....+... ...+ .++|+|+++++++++. ++.|.+||+.+++.
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~--------~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~ 74 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLG--------YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP 74 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECC--------CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEcc--------CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce
Confidence 45665555 677788999999999999887665533 2455 9999999997777665 88999999999887
Q ss_pred -eEEeecccCCCeEEEEEccCCCEEEEEECCC---eEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEE-eCCCc-
Q psy8448 185 -LRKLEKAHSLGVTCIQFSRDNSQILTASFDT---YVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSA-SSDGT- 258 (482)
Q Consensus 185 -~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~-~~dg~- 258 (482)
...+ ..+..+..+++|+|++++++++..++ .|.+||+.+++.+..+.. ...+.+++|+|++++++++ ..++.
T Consensus 75 ~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~ 152 (331)
T 3u4y_A 75 KVVAI-QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANT 152 (331)
T ss_dssp EEEEE-EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTE
T ss_pred eEEec-ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCce
Confidence 5555 44555555599999999999655553 899999999998887764 4456899999999865554 55688
Q ss_pred EEEEECCCCceeeee-eccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcE---EEEecCCcccCcCEEEEEE
Q psy8448 259 VKMWNLKTTECTSTF-KSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQI---VRSLSSGKREGGDFLCCTT 333 (482)
Q Consensus 259 i~i~d~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~---~~~~~~~~~~~~~v~~~~~ 333 (482)
|.+|++.....+... ............++|+|++..+++++..++.|.+||+ .++. +..+.. ...+..++|
T Consensus 153 i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~----~~~~~~~~~ 228 (331)
T 3u4y_A 153 VRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT----NNLPGTIVV 228 (331)
T ss_dssp EEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC----SSCCCCEEE
T ss_pred EEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC----CCCCceEEE
Confidence 999999864332111 1000334457899999999445666667899999999 5665 666653 345678999
Q ss_pred cCCCCEEEEEe-CCcEEEEEe
Q psy8448 334 SPRGEWIYCVG-EDMVLVVRL 353 (482)
Q Consensus 334 ~~~g~~l~~~~-~dg~i~iw~ 353 (482)
+|+|++|++++ .++.|.+|+
T Consensus 229 spdg~~l~v~~~~~~~i~~~d 249 (331)
T 3u4y_A 229 SRDGSTVYVLTESTVDVFNFN 249 (331)
T ss_dssp CTTSSEEEEECSSEEEEEEEE
T ss_pred CCCCCEEEEEEcCCCEEEEEE
Confidence 99999887665 467788443
No 135
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.94 E-value=9e-25 Score=196.83 Aligned_cols=209 Identities=15% Similarity=0.135 Sum_probs=157.3
Q ss_pred EeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CeEeEEeecccCCCe
Q psy8448 118 GSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIAT-GQCLRKLEKAHSLGV 196 (482)
Q Consensus 118 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v 196 (482)
++.|+.|++||+.+++..... .|...+.+++|+|++++|++++ ++.|.+||+.+ ++........+...+
T Consensus 18 ~~~~~~i~~~d~~~~~~~~~~---------~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~ 87 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRVVW---------QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICN 87 (297)
T ss_dssp CCCCEEEEEEETTTTEEEEEE---------EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBC
T ss_pred CCcceeEEEEeCCCCceeeec---------cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccc
Confidence 457899999999987754322 2467899999999999999986 78999999998 776655532234678
Q ss_pred EEEEEccCCCEEEEEEC--C--CeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEE-EEeCCCcEEEEECC--CCce
Q psy8448 197 TCIQFSRDNSQILTASF--D--TYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVL-SASSDGTVKMWNLK--TTEC 269 (482)
Q Consensus 197 ~~i~~~~~~~~l~~~~~--d--g~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~-~~~~dg~i~i~d~~--~~~~ 269 (482)
.+++|+|++++|++++. + ..|..+++.+++ ...+..+ ..+..++|+|+++.|+ ++..++.+.+|+++ +++.
T Consensus 88 ~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~ 165 (297)
T 2ojh_A 88 NDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE 165 (297)
T ss_dssp SCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE
T ss_pred cceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc
Confidence 99999999999999983 3 455555655555 3444433 3488999999999887 67788999999864 3433
Q ss_pred eeeeeccCCCccceeEEEEcCCCCCEEEE-EeCCCeEEEEEc--CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCC
Q psy8448 270 TSTFKSLGASDIAVNSIHLLPKNTEHFVV-CNKTNTVVIMNM--QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGED 346 (482)
Q Consensus 270 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~~-~~~d~~i~i~d~--~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~d 346 (482)
..+. .+...+.++.|+|++ ..+++ +..++.+.+|++ .+.....+..+ ...+.+++|+|+|++|++++.+
T Consensus 166 -~~~~---~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~ 237 (297)
T 2ojh_A 166 -TRLT---HGEGRNDGPDYSPDG-RWIYFNSSRTGQMQIWRVRVDGSSVERITDS---AYGDWFPHPSPSGDKVVFVSYD 237 (297)
T ss_dssp -EECC---CSSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCEEECCCC---SEEEEEEEECTTSSEEEEEEEE
T ss_pred -eEcc---cCCCccccceECCCC-CEEEEEecCCCCccEEEECCCCCCcEEEecC---CcccCCeEECCCCCEEEEEEcC
Confidence 3333 566789999999999 55554 446889999987 45666666554 5678899999999999988876
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.94 E-value=2.1e-24 Score=219.60 Aligned_cols=262 Identities=13% Similarity=0.169 Sum_probs=186.0
Q ss_pred CCccccccccccccccccceeeecCCCC---cEEEEEEcCCCCEEEEEeCC---------CeEEEEecCCCceeeccccc
Q psy8448 74 RGKAAMKDQEEEKYPTQLSKQIKFGSKS---HVECARFSPDGQYLITGSVD---------GFIEVWNFTTGKIRKDLKYQ 141 (482)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~s~~~~~l~s~~~d---------g~v~iwd~~~~~~~~~~~~~ 141 (482)
++.+.+|+...... ..+..+|.. .|.+++|||||++|++++.+ +.+++||+.+++.. .+...
T Consensus 36 dg~i~~~d~~~g~~-----~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~ 109 (723)
T 1xfd_A 36 KGTVRLWNVETNTS-----TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ-SLDPP 109 (723)
T ss_dssp SSCEEEBCGGGCCC-----EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE-ECCCT
T ss_pred CCCEEEEECCCCcE-----EEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceE-eccCC
Confidence 45667777654432 233335554 49999999999999999764 78899999988752 22211
Q ss_pred cccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCC------------------eEEEEEcc
Q psy8448 142 AQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLG------------------VTCIQFSR 203 (482)
Q Consensus 142 ~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~------------------v~~i~~~~ 203 (482)
.+|...+..++|+|||++|++++. +.|++||+.+++..... ..+... +.+++|+|
T Consensus 110 -----~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~-~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp 182 (723)
T 1xfd_A 110 -----EVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVV-STGKEGVIYNGLSDWLYEEEILKTHIAHWWSP 182 (723)
T ss_dssp -----TCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEE-CCCBTTTEEEEECCHHHHHTTSSSSEEEEECT
T ss_pred -----ccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEe-cCCCCCceECcccceeEEEEeccCcceEEECC
Confidence 123455889999999999999886 79999999988776655 333332 37899999
Q ss_pred CCCEEEEEECCC----------------------------------eEEEEeCCCCceEEEeecc------ccceeEEEE
Q psy8448 204 DNSQILTASFDT----------------------------------YVRIHGLKSGKMLKEFRGH------SSFVNDITF 243 (482)
Q Consensus 204 ~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~~~~~~~------~~~i~~l~~ 243 (482)
||++|++++.++ .|++||+.+++....+..+ ...+..++|
T Consensus 183 Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 262 (723)
T 1xfd_A 183 DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKW 262 (723)
T ss_dssp TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEE
T ss_pred CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEE
Confidence 999999887543 7999999988865666543 567899999
Q ss_pred cCCCCEEEEEeC----CCcEEEEECCCCceeeeeeccCCCccce----eEEEEcCCCCCEEEE-EeCCC------eEEEE
Q psy8448 244 TADGHSVLSASS----DGTVKMWNLKTTECTSTFKSLGASDIAV----NSIHLLPKNTEHFVV-CNKTN------TVVIM 308 (482)
Q Consensus 244 ~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~v----~~i~~~~~~~~~l~~-~~~d~------~i~i~ 308 (482)
+|||+++++... +..|.+||+.+++....+.. .+...+ ..++|+|+|..++++ +..++ .|.+|
T Consensus 263 SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~--~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~ 340 (723)
T 1xfd_A 263 ATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED--ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVS 340 (723)
T ss_dssp SSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE--ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEE
T ss_pred eCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEe--ccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEE
Confidence 999998877653 35799999999887665532 122233 378999999655555 56677 57778
Q ss_pred E-cCCcE---EEEecCCcccCcCEEE-EEEcCCCCEEEEEeCC---cEEEEEe
Q psy8448 309 N-MQGQI---VRSLSSGKREGGDFLC-CTTSPRGEWIYCVGED---MVLVVRL 353 (482)
Q Consensus 309 d-~~~~~---~~~~~~~~~~~~~v~~-~~~~~~g~~l~~~~~d---g~i~iw~ 353 (482)
| ..+.. ...+..+ ...+.. ++|+|||+.|+..+.+ +.+++|+
T Consensus 341 d~~~~~~~~~~~~l~~~---~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 390 (723)
T 1xfd_A 341 SSQPNSSNDNIQSITSG---DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYS 390 (723)
T ss_dssp CSSCCSSSCCCCBSCCS---SSCEEEEEEEETTTTEEEEEESSSCTTCCEEEE
T ss_pred eccCCCCccceeEeecC---CeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEE
Confidence 7 44443 4444432 334454 6999999999876655 7788554
No 137
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=1.7e-24 Score=220.91 Aligned_cols=234 Identities=13% Similarity=0.106 Sum_probs=176.9
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEecCCC---ceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy8448 102 HVECARFSPDGQYLITGSVDGFIEVWNFTTG---KIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWK 178 (482)
Q Consensus 102 ~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd 178 (482)
.|.+++|||||++|++++. +.|++||+.++ +.. .+ ..|...+..++|+|||++|++++. +.|++||
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~-~l--------~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d 178 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR-QL--------THGEGFATDAKLSPKGGFVSFIRG-RNLWVID 178 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCC-BC--------CCSSSCEEEEEECTTSSEEEEEET-TEEEEEE
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEE-Ec--------ccCCcccccccCCCCCCEEEEEeC-CcEEEEe
Confidence 4889999999999999986 99999999887 322 22 224567999999999999999874 6999999
Q ss_pred cCCCeEeEEeecccCCC----------------eEEEEEccCCCEEEEEECCC---------------------------
Q psy8448 179 IATGQCLRKLEKAHSLG----------------VTCIQFSRDNSQILTASFDT--------------------------- 215 (482)
Q Consensus 179 ~~~~~~~~~~~~~~~~~----------------v~~i~~~~~~~~l~~~~~dg--------------------------- 215 (482)
+.+++..... ..+... +..++|+|||++|++++.|+
T Consensus 179 ~~~g~~~~~~-~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g 257 (741)
T 2ecf_A 179 LASGRQMQLT-ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAG 257 (741)
T ss_dssp TTTTEEEECC-CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTT
T ss_pred cCCCCEEEec-cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCC
Confidence 9988765544 233222 47899999999999987665
Q ss_pred ------eEEEEeCCC-CceEEEee--ccccceeEEEEcCCCCEEEEEeC-----CCcEEEEECCCCceeeeeeccCCC-c
Q psy8448 216 ------YVRIHGLKS-GKMLKEFR--GHSSFVNDITFTADGHSVLSASS-----DGTVKMWNLKTTECTSTFKSLGAS-D 280 (482)
Q Consensus 216 ------~i~i~d~~~-~~~~~~~~--~~~~~i~~l~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~-~ 280 (482)
.|++||+.+ ++...... .|...+..++| |||++|++++. +..|.+||+.+++....+...... -
T Consensus 258 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~ 336 (741)
T 2ecf_A 258 DANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWV 336 (741)
T ss_dssp SCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCC
T ss_pred CCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcC
Confidence 899999988 77654443 37788999999 99999987754 567999999999877666421100 0
Q ss_pred cceeEEEEcCCCCCEEEEEeCCCeEEEEEc--CCcEEEEecCCcccCcCEEEE-EEcCCCCEEEEE-eCCc--EEEEEe
Q psy8448 281 IAVNSIHLLPKNTEHFVVCNKTNTVVIMNM--QGQIVRSLSSGKREGGDFLCC-TTSPRGEWIYCV-GEDM--VLVVRL 353 (482)
Q Consensus 281 ~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~~~~v~~~-~~~~~g~~l~~~-~~dg--~i~iw~ 353 (482)
..+..++|+|++ +++++++.++.+.+|.+ +++ ...+..+ ...+..+ .|+|+|+.|+.. +.++ .+++|+
T Consensus 337 ~~~~~~~~spdg-~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~---~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 337 PLHNSLRFLDDG-SILWSSERTGFQHLYRIDSKGK-AAALTHG---NWSVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp CCCSCCEECTTS-CEEEEECTTSSCEEEEECSSSC-EEESCCS---SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred CcCCceEECCCC-eEEEEecCCCccEEEEEcCCCC-eeeeeec---ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 145688999999 58888889987777766 466 6666554 5667777 599999987654 4454 788554
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.93 E-value=2.7e-24 Score=218.11 Aligned_cols=229 Identities=13% Similarity=0.152 Sum_probs=172.4
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q psy8448 101 SHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIA 180 (482)
Q Consensus 101 ~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~ 180 (482)
..|.+++|||| +.++.+. ++.|++||+.+++...... +...+.+++|+|+|++|+++ .++.|++||+.
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l~~---------~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~ 149 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYLFD---------TNEETASLDFSPVGDRVAYV-RNHNLYIARGG 149 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEEEC---------CTTCCTTCEECTTSSEEEEE-ETTEEEEEECB
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEccC---------CcccccCCcCCCCCCEEEEE-ECCeEEEEecC
Confidence 57999999999 6666554 5999999998876543222 23567889999999999985 67999999998
Q ss_pred C-----CeEeEEeecccCCC--------------eEEEEEccCCCEEEEEE-----------------------------
Q psy8448 181 T-----GQCLRKLEKAHSLG--------------VTCIQFSRDNSQILTAS----------------------------- 212 (482)
Q Consensus 181 ~-----~~~~~~~~~~~~~~--------------v~~i~~~~~~~~l~~~~----------------------------- 212 (482)
+ ++..... ..+... +.+++|+|||++|++++
T Consensus 150 ~~~~~~g~~~~~~-~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~ 228 (706)
T 2z3z_A 150 KLGEGMSRAIAVT-IDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMA 228 (706)
T ss_dssp CTTSCCCCCEESC-SCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBT
T ss_pred cccccCCCcEEec-cCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCC
Confidence 8 7655433 222222 47899999999999987
Q ss_pred ----CCCeEEEEeCCCCceEEEee--ccccceeEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceeeeeeccCCCc-
Q psy8448 213 ----FDTYVRIHGLKSGKMLKEFR--GHSSFVNDITFTADGHSVLSASSDG-----TVKMWNLKTTECTSTFKSLGASD- 280 (482)
Q Consensus 213 ----~dg~i~i~d~~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~- 280 (482)
.+..|++||+.+++...... .|...+.+++|+|||+.|++++.++ .|.+||+.+++....+... .+.
T Consensus 229 g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~-~~~~ 307 (706)
T 2z3z_A 229 GTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVE-TDKH 307 (706)
T ss_dssp TSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEE-ECSS
T ss_pred CCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEc-cCCC
Confidence 44689999999887654432 4667899999999999999887765 8999999998443333211 111
Q ss_pred --cceeEEEEcC--CCCCEEEEEeCCCeEEEEEc--CCcEEEEecCCcccCcCEEE-EEEcCCCCEEEEEeCCc
Q psy8448 281 --IAVNSIHLLP--KNTEHFVVCNKTNTVVIMNM--QGQIVRSLSSGKREGGDFLC-CTTSPRGEWIYCVGEDM 347 (482)
Q Consensus 281 --~~v~~i~~~~--~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~~~~v~~-~~~~~~g~~l~~~~~dg 347 (482)
..+..+.|+| ++ .++++++.++.+++|.+ +++.+..+..+ ...+.. ++|+|+|+.|+.++.+.
T Consensus 308 ~~~~~~~~~~sp~~dg-~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~---~~~v~~~~~~spdg~~l~~~~~~~ 377 (706)
T 2z3z_A 308 YVEPLHPLTFLPGSNN-QFIWQSRRDGWNHLYLYDTTGRLIRQVTKG---EWEVTNFAGFDPKGTRLYFESTEA 377 (706)
T ss_dssp CCCCCSCCEECTTCSS-EEEEEECTTSSCEEEEEETTSCEEEECCCS---SSCEEEEEEECTTSSEEEEEESSS
T ss_pred eECccCCceeecCCCC-EEEEEEccCCccEEEEEECCCCEEEecCCC---CeEEEeeeEEcCCCCEEEEEecCC
Confidence 2346789999 88 68888888998888877 56777777654 556766 79999999887666543
No 139
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.93 E-value=5.5e-25 Score=223.84 Aligned_cols=240 Identities=10% Similarity=0.098 Sum_probs=173.5
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC---------C
Q psy8448 102 HVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS---------G 172 (482)
Q Consensus 102 ~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d---------g 172 (482)
.+.+++|+|||+++++ +.||+|++||+.+++....+..+.. +...|.+++|+|||++|++++.+ +
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~-----~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~ 91 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKI-----ESLRAIRYEISPDREYALFSYNVEPIYQHSYTG 91 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTT-----TTTTCSEEEECTTSSEEEEEESCCCCSSSCCCS
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccc-----cccccceEEECCCCCEEEEEecCccceeeccee
Confidence 4677899999998776 7899999999999876554433210 01248999999999999999764 7
Q ss_pred cEEEEEcCCCeEeEEee--cccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccce------------
Q psy8448 173 KVKIWKIATGQCLRKLE--KAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFV------------ 238 (482)
Q Consensus 173 ~i~iwd~~~~~~~~~~~--~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i------------ 238 (482)
.+.+||+.+++. ..+. ..+...+..++|+|||+.|+.++. +.|++||+.+++.......+...+
T Consensus 92 ~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~e 169 (723)
T 1xfd_A 92 YYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEE 169 (723)
T ss_dssp EEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHH
T ss_pred eEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEE
Confidence 888999998875 3332 223445889999999999999985 899999999988766655444333
Q ss_pred ------eEEEEcCCCCEEEEEeCCC----------------------------------cEEEEECCCCceeeeeecc--
Q psy8448 239 ------NDITFTADGHSVLSASSDG----------------------------------TVKMWNLKTTECTSTFKSL-- 276 (482)
Q Consensus 239 ------~~l~~~~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~~~~~~~-- 276 (482)
.+++|+|||+.|++++.++ .|.+||+.+++....+...
T Consensus 170 e~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~ 249 (723)
T 1xfd_A 170 EILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDD 249 (723)
T ss_dssp TTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCC
T ss_pred EeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCcc
Confidence 7899999999999887543 7999999988754444311
Q ss_pred -CCCccceeEEEEcCCCCCEEEEEeC----CCeEEEEEc-CCcEEEEecCCcccCcCE----EEEEEcCCCCEEEE--Ee
Q psy8448 277 -GASDIAVNSIHLLPKNTEHFVVCNK----TNTVVIMNM-QGQIVRSLSSGKREGGDF----LCCTTSPRGEWIYC--VG 344 (482)
Q Consensus 277 -~~~~~~v~~i~~~~~~~~~l~~~~~----d~~i~i~d~-~~~~~~~~~~~~~~~~~v----~~~~~~~~g~~l~~--~~ 344 (482)
..+...+..++|+|+| +++++... +..|++||+ .++....+.... ...+ ..++|+|||+.|+. +.
T Consensus 250 ~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~~~~~~~~~spdg~~l~~~~~~ 326 (723)
T 1xfd_A 250 PRMREYYITMVKWATST-KVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES--EAWLHRQNEEPVFSKDGRKFFFIRAI 326 (723)
T ss_dssp GGGSSEEEEEEEESSSS-EEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC--SSCCCCCCCCCEECTTSCSEEEEEEE
T ss_pred CCCccceeEEEEEeCCC-eEEEEEEcCCCCeEEEEEEeCCCCcceEEEEecc--CCEEeccCCCceEcCCCCeEEEEEec
Confidence 0135678999999999 56655542 357999999 455444433221 1222 36899999997775 45
Q ss_pred CCc----EEEEE
Q psy8448 345 EDM----VLVVR 352 (482)
Q Consensus 345 ~dg----~i~iw 352 (482)
.++ ...||
T Consensus 327 ~~~~~~~~~~l~ 338 (723)
T 1xfd_A 327 PQGGRGKFYHIT 338 (723)
T ss_dssp CCSSSSCEEEEE
T ss_pred ccCCCcceeEEE
Confidence 677 55544
No 140
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.93 E-value=1.3e-23 Score=193.65 Aligned_cols=265 Identities=13% Similarity=0.216 Sum_probs=183.9
Q ss_pred CCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCC-CeEEEEecC--CCceeecccccccccccccc
Q psy8448 74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVD-GFIEVWNFT--TGKIRKDLKYQAQDNFMLME 150 (482)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-g~v~iwd~~--~~~~~~~~~~~~~~~~~~h~ 150 (482)
++.+.+|+..... ....... ..|...+.+++|+|+|++|++++.+ +.|.+|++. +++......... .
T Consensus 14 ~~~v~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-------~ 83 (343)
T 1ri6_A 14 SQQIHVWNLNHEG-ALTLTQV--VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL-------P 83 (343)
T ss_dssp GTEEEEEEECTTS-CEEEEEE--EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC-------S
T ss_pred CCeEEEEEECCCC-cEEEeee--EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc-------C
Confidence 5667777764311 1111112 2577789999999999999888876 999999998 554332211111 2
Q ss_pred ccEEEEEEcCCCCEEEEEeC-CCcEEEEEcC---CCeEeEEeecccCCCeEEEEEccCCCEEEEEE-CCCeEEEEeCCC-
Q psy8448 151 EAVMSLAYSRDSEMLASGSQ-SGKVKIWKIA---TGQCLRKLEKAHSLGVTCIQFSRDNSQILTAS-FDTYVRIHGLKS- 224 (482)
Q Consensus 151 ~~i~~l~~~~~~~~l~~~~~-dg~i~iwd~~---~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg~i~i~d~~~- 224 (482)
..+..++|+|++++|++++. ++.|.+||+. ..+....+ .....+.+++|+|+++++++++ .++.|.+||+.+
T Consensus 84 ~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 161 (343)
T 1ri6_A 84 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV--EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDD 161 (343)
T ss_dssp SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE--CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccc--cCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCC
Confidence 36889999999998877765 8889999994 33344444 2344688999999999888887 899999999987
Q ss_pred CceEE----Eeec-cccceeEEEEcCCCCEEEEEe-CCCcEEEEECCC--Cce--eeeeeccCC---CccceeEEEEcCC
Q psy8448 225 GKMLK----EFRG-HSSFVNDITFTADGHSVLSAS-SDGTVKMWNLKT--TEC--TSTFKSLGA---SDIAVNSIHLLPK 291 (482)
Q Consensus 225 ~~~~~----~~~~-~~~~i~~l~~~~~~~~l~~~~-~dg~i~i~d~~~--~~~--~~~~~~~~~---~~~~v~~i~~~~~ 291 (482)
++... .+.. ....+.+++|+|+++++++++ .++.|.+||+.. ++. ...+..... ....+..++|+|+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~d 241 (343)
T 1ri6_A 162 GHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD 241 (343)
T ss_dssp SCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTT
T ss_pred CceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCC
Confidence 55432 2222 345788999999999776655 789999999954 332 222221111 1335668999999
Q ss_pred CCCEEEEEeCCCeEEEEEcC--Cc---EEEEecCCcccCcCEEEEEEcCCCCEEEEEe-CCcEEEEEee
Q psy8448 292 NTEHFVVCNKTNTVVIMNMQ--GQ---IVRSLSSGKREGGDFLCCTTSPRGEWIYCVG-EDMVLVVRLI 354 (482)
Q Consensus 292 ~~~~l~~~~~d~~i~i~d~~--~~---~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~-~dg~i~iw~~ 354 (482)
+..+++++..++.|.+|++. +. .+..+.. ...+..++|+|+|++|++++ .++.+.+|++
T Consensus 242 g~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~ 306 (343)
T 1ri6_A 242 GRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT----ETQPRGFNVDHSGKYLIAAGQKSHHISVYEI 306 (343)
T ss_dssp SSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC----SSSCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred CCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC----CCccceEEECCCCCEEEEecCCCCeEEEEEE
Confidence 94444466689999999995 32 2333332 22378899999999999888 6899997754
No 141
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.93 E-value=9.5e-24 Score=194.04 Aligned_cols=222 Identities=10% Similarity=0.104 Sum_probs=164.2
Q ss_pred CEEEEEeCCCeEEEEecCCCceeeccccccccccccccc-cEEEEEEcCCCCEEEE-EeCCCcEEEEEcCCCeEeEEeec
Q psy8448 113 QYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEE-AVMSLAYSRDSEMLAS-GSQSGKVKIWKIATGQCLRKLEK 190 (482)
Q Consensus 113 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~-~i~~l~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~ 190 (482)
++|++++.++.|.+||+.+++....+.... .. .+..++|+|+++++++ +..++.|.+||+.+++.+..+..
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~-------~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~ 74 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIAD-------AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL 74 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTT-------CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCC-------CCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEc
Confidence 478999999999999999988776654331 11 4778999999987655 45678999999999988877643
Q ss_pred cc----CCCeEEEEEccCCCEEEEEE------------CCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEe
Q psy8448 191 AH----SLGVTCIQFSRDNSQILTAS------------FDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSAS 254 (482)
Q Consensus 191 ~~----~~~v~~i~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~ 254 (482)
.+ ...+..++|+|++++++++. .++.|.+||+.+++.+..+.. ...+.+++|+|++++|+++
T Consensus 75 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~- 152 (337)
T 1pby_B 75 STPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL- 152 (337)
T ss_dssp CBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE-
T ss_pred CCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe-
Confidence 32 22577899999999998886 579999999999888777764 4568899999999988887
Q ss_pred CCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCC-----------------------eEEEEEcC
Q psy8448 255 SDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTN-----------------------TVVIMNMQ 311 (482)
Q Consensus 255 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~-----------------------~i~i~d~~ 311 (482)
++.|.+||+.+++....+.... ...+ +.|+|++..+++++..++ .|.+||..
T Consensus 153 -~~~i~~~d~~~~~~~~~~~~~~-~~~~---~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 227 (337)
T 1pby_B 153 -GRDLHVMDPEAGTLVEDKPIQS-WEAE---TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE 227 (337)
T ss_dssp -SSSEEEEETTTTEEEEEECSTT-TTTT---TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT
T ss_pred -CCeEEEEECCCCcEeeeeeccc-cCCC---ceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCC
Confidence 6889999999998776664211 1122 367888844444433333 46899994
Q ss_pred -CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEE
Q psy8448 312 -GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVR 352 (482)
Q Consensus 312 -~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw 352 (482)
++.. .+.. ..+...+.+++|+|+|++++++ ++.|++|
T Consensus 228 ~~~~~-~~~~-~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~ 265 (337)
T 1pby_B 228 TGEMA-MREV-RIMDVFYFSTAVNPAKTRAFGA--YNVLESF 265 (337)
T ss_dssp TCCEE-EEEE-EECSSCEEEEEECTTSSEEEEE--ESEEEEE
T ss_pred CCCce-Eeec-CCCCCceeeEEECCCCCEEEEe--CCeEEEE
Confidence 4433 2221 1224567889999999999988 6889943
No 142
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.93 E-value=4.1e-24 Score=192.55 Aligned_cols=253 Identities=18% Similarity=0.204 Sum_probs=181.1
Q ss_pred CCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCC-Cceeecccccccccccccccc
Q psy8448 74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTT-GKIRKDLKYQAQDNFMLMEEA 152 (482)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~h~~~ 152 (482)
++.+.+|+...... . .+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++........ +...
T Consensus 21 ~~~i~~~d~~~~~~-----~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~-------~~~~ 86 (297)
T 2ojh_A 21 RSSIEIFNIRTRKM-----R-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGF-------ATIC 86 (297)
T ss_dssp CEEEEEEETTTTEE-----E-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTT-------CCCB
T ss_pred ceeEEEEeCCCCce-----e-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccc-------cccc
Confidence 45566666543221 1 2236788999999999999999987 78999999998 7655443322 1357
Q ss_pred EEEEEEcCCCCEEEEEe--CCCcEEEEE--cCCCeEeEEeecccCCCeEEEEEccCCCEEE-EEECCCeEEEEeCCC-Cc
Q psy8448 153 VMSLAYSRDSEMLASGS--QSGKVKIWK--IATGQCLRKLEKAHSLGVTCIQFSRDNSQIL-TASFDTYVRIHGLKS-GK 226 (482)
Q Consensus 153 i~~l~~~~~~~~l~~~~--~dg~i~iwd--~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~~dg~i~i~d~~~-~~ 226 (482)
+.+++|+|++++|++++ .++...+|. +.++. ...+ . ....+..++|+|++++|+ ++..++.+.+|+++. ..
T Consensus 87 ~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~-~-~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~ 163 (297)
T 2ojh_A 87 NNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLM-T-KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG 163 (297)
T ss_dssp CSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEEC-C-SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC
T ss_pred ccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEe-e-cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCC
Confidence 88999999999999998 334555554 44444 3333 2 334589999999999887 777899889988532 23
Q ss_pred eEEEeeccccceeEEEEcCCCCEEEEEe-CCCcEEEEECC-CCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC--
Q psy8448 227 MLKEFRGHSSFVNDITFTADGHSVLSAS-SDGTVKMWNLK-TTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT-- 302 (482)
Q Consensus 227 ~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~dg~i~i~d~~-~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-- 302 (482)
....+..+...+.+++|+|+++.|+.++ .++.+.+|++. .+.....+. .+...+..+.|+|++ ..+++++.+
T Consensus 164 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~s~dg-~~l~~~~~~~~ 239 (297)
T 2ojh_A 164 VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT---DSAYGDWFPHPSPSG-DKVVFVSYDAD 239 (297)
T ss_dssp CEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECC---CCSEEEEEEEECTTS-SEEEEEEEETT
T ss_pred cceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEe---cCCcccCCeEECCCC-CEEEEEEcCCC
Confidence 3456666888899999999999888776 58899999886 444445544 566789999999999 666666554
Q ss_pred ---------CeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCc
Q psy8448 303 ---------NTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDM 347 (482)
Q Consensus 303 ---------~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg 347 (482)
+.|.+||+.+.....+.....+...+.+++|+|+|++|++++.+.
T Consensus 240 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 240 VFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp CCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 569999995433222221112256788899999999999877653
No 143
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.92 E-value=1.2e-23 Score=221.71 Aligned_cols=269 Identities=13% Similarity=0.102 Sum_probs=193.3
Q ss_pred cCCCCCCceeeccC------C--ccccccccccccccccceeeecCCCCcE-------EEEEEcCCCCEEEEEeCC----
Q psy8448 61 QGLLPPGTTIDLFR------G--KAAMKDQEEEKYPTQLSKQIKFGSKSHV-------ECARFSPDGQYLITGSVD---- 121 (482)
Q Consensus 61 ~~~~~~g~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~~h~~~v-------~~~~~s~~~~~l~s~~~d---- 121 (482)
..+.|+|..+++.. + .+.+|+..... . ..+..|...+ .+++|+|||+++++++.+
T Consensus 58 ~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-----~-~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~ 131 (1045)
T 1k32_A 58 ARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-----I-KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFS 131 (1045)
T ss_dssp EEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-----E-EECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSST
T ss_pred eEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-----e-EEcccCCCcccccccccccccCCCCCEEEEEECCcCCCc
Confidence 34557887777553 2 34455443321 2 2234788888 999999999977777744
Q ss_pred --CeEEEEecCCCceeecccc-----------------------------------------ccccccccccccEEEEEE
Q psy8448 122 --GFIEVWNFTTGKIRKDLKY-----------------------------------------QAQDNFMLMEEAVMSLAY 158 (482)
Q Consensus 122 --g~v~iwd~~~~~~~~~~~~-----------------------------------------~~~~~~~~h~~~i~~l~~ 158 (482)
..|.+|++.+++....... .....+.+|...+.++.|
T Consensus 132 ~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~ 211 (1045)
T 1k32_A 132 SMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVI 211 (1045)
T ss_dssp TCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEE
T ss_pred ccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEE
Confidence 4688888876654321110 001123467788999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCC-CeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeec----
Q psy8448 159 SRDSEMLASGSQSGKVKIWKIAT-GQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRG---- 233 (482)
Q Consensus 159 ~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---- 233 (482)
+++ .++++++.++.+.+|.+.. +.....+ ..+. .+...+|+|+|+.|+++. ++.|++||+...+ +..+..
T Consensus 212 s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l-~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~-l~~l~~~~~~ 286 (1045)
T 1k32_A 212 VGH-RIYFITDIDGFGQIYSTDLDGKDLRKH-TSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEK-IEKIEIGDLE 286 (1045)
T ss_dssp ETT-EEEEEECTTSSCEEEEEETTSCSCEEC-CCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTCC-EEECCCCCCC
T ss_pred eCC-EEEEEEeccCceEEEEEeCCCCcceEe-cCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCceE-eeeeccCccc
Confidence 988 6667778889999998753 3344444 3343 466779999999998885 8999999995443 335544
Q ss_pred -------cccceeEEEEc-CCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCcc-ceeEEEEcCCCCCEEEEEeCCCe
Q psy8448 234 -------HSSFVNDITFT-ADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDI-AVNSIHLLPKNTEHFVVCNKTNT 304 (482)
Q Consensus 234 -------~~~~i~~l~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~~~~d~~ 304 (482)
|...+.+++|+ |+|+.|++++ ++.|.+|++..++... +. .+.. .+..++|+ ++ ..++.++.++.
T Consensus 287 ~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~---~~~~~~~~~~~~s-dg-~~l~~~s~~~~ 359 (1045)
T 1k32_A 287 SPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VP---EPLRIRYVRRGGD-TK-VAFIHGTREGD 359 (1045)
T ss_dssp BCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CS---CCSCEEEEEECSS-SE-EEEEEEETTEE
T ss_pred ccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-cc---CCCcceEEeeeEc-CC-CeEEEEECCCc
Confidence 34478999999 9999998888 7899999998876543 22 4555 88999999 87 77788777888
Q ss_pred EE-EEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448 305 VV-IMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLV 350 (482)
Q Consensus 305 i~-i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~ 350 (482)
+. +|+..+.....+.. +...+..++|+|||++|++++.++.++
T Consensus 360 l~~~~d~~~~~~~~l~~---~~~~~~~~~~SpDG~~la~~~~~~~v~ 403 (1045)
T 1k32_A 360 FLGIYDYRTGKAEKFEE---NLGNVFAMGVDRNGKFAVVANDRFEIM 403 (1045)
T ss_dssp EEEEEETTTCCEEECCC---CCCSEEEEEECTTSSEEEEEETTSEEE
T ss_pred eEEEEECCCCCceEecC---CccceeeeEECCCCCEEEEECCCCeEE
Confidence 88 89996655555552 267889999999999999999999999
No 144
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.92 E-value=4.8e-23 Score=217.15 Aligned_cols=243 Identities=12% Similarity=0.119 Sum_probs=191.9
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccc---ccccccccccEEEEEEc-CCCCEEEEEeCCCc
Q psy8448 98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQA---QDNFMLMEEAVMSLAYS-RDSEMLASGSQSGK 173 (482)
Q Consensus 98 ~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~---~~~~~~h~~~i~~l~~~-~~~~~l~~~~~dg~ 173 (482)
+|. .+..++|+|||+.|+++. ++.|++|++...+.. .+.... ......|...+.+++|+ |+|++|++++ ++.
T Consensus 243 ~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~ 318 (1045)
T 1k32_A 243 SFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQ 318 (1045)
T ss_dssp CCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTE
T ss_pred CCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCE
Confidence 444 467789999999999885 899999999544333 322211 11122245578999999 9999999988 789
Q ss_pred EEEEEcCCCeEeEEeecccCC-CeEEEEEccCCCEEEEEECCCeEE-EEeCCCCceEEEeeccccceeEEEEcCCCCEEE
Q psy8448 174 VKIWKIATGQCLRKLEKAHSL-GVTCIQFSRDNSQILTASFDTYVR-IHGLKSGKMLKEFRGHSSFVNDITFTADGHSVL 251 (482)
Q Consensus 174 i~iwd~~~~~~~~~~~~~~~~-~v~~i~~~~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~ 251 (482)
+.+|++.+++... + ..+.. .+..++|+ +|+.|++++.++.+. +||+.+++... +.+|...+..++|+|+|++|+
T Consensus 319 i~~~~~~~~~~~~-~-~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la 394 (1045)
T 1k32_A 319 AFIQDVSGTYVLK-V-PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAV 394 (1045)
T ss_dssp EEEECTTSSBEEE-C-SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEE
T ss_pred EEEEcCCCCceEE-c-cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEE
Confidence 9999998776543 4 45666 89999999 999999999888899 99998776544 447888899999999999999
Q ss_pred EEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC----------CeEEEEEcCCcEEEEecCC
Q psy8448 252 SASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT----------NTVVIMNMQGQIVRSLSSG 321 (482)
Q Consensus 252 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d----------~~i~i~d~~~~~~~~~~~~ 321 (482)
+++.++.|++||+.+++...... .+...+.+++|+|+| +++++++.+ +.|++||+.+.....+..+
T Consensus 395 ~~~~~~~v~~~d~~tg~~~~~~~---~~~~~v~~~~~SpDG-~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~ 470 (1045)
T 1k32_A 395 VANDRFEIMTVDLETGKPTVIER---SREAMITDFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTE 470 (1045)
T ss_dssp EEETTSEEEEEETTTCCEEEEEE---CSSSCCCCEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCS
T ss_pred EECCCCeEEEEECCCCceEEecc---CCCCCccceEECCCC-CeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCC
Confidence 99999999999999998777665 677788999999999 667666554 4899999965556666554
Q ss_pred cccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448 322 KREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ 355 (482)
Q Consensus 322 ~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~ 355 (482)
...+..++|+|||++|++++.++...+|+..
T Consensus 471 ---~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 471 ---NSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp ---SSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred ---CcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 5667889999999999999998888877643
No 145
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.92 E-value=1.4e-22 Score=185.91 Aligned_cols=262 Identities=13% Similarity=0.127 Sum_probs=181.9
Q ss_pred CCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEecCCCce-eeccccccccccccccc
Q psy8448 74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSV-DGFIEVWNFTTGKI-RKDLKYQAQDNFMLMEE 151 (482)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-dg~v~iwd~~~~~~-~~~~~~~~~~~~~~h~~ 151 (482)
++.+.+|+...... ...+. .+...+ +++|+|+|+++++++. ++.|.+||+.+++. ...+... ..
T Consensus 19 ~~~v~~~d~~~~~~----~~~~~-~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~--------~~ 84 (331)
T 3u4y_A 19 LRRISFFSTDTLEI----LNQIT-LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG--------QS 84 (331)
T ss_dssp GTEEEEEETTTCCE----EEEEE-CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC--------SS
T ss_pred CCeEEEEeCcccce----eeeEE-ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC--------CC
Confidence 45666776543322 22233 345556 9999999997766654 88999999998876 3333322 34
Q ss_pred cEEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEE-ECCCe-EEEEeCCCCc
Q psy8448 152 AVMSLAYSRDSEMLASGSQSG---KVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTA-SFDTY-VRIHGLKSGK 226 (482)
Q Consensus 152 ~i~~l~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~~dg~-i~i~d~~~~~ 226 (482)
+..+++|+|++++++++..++ .|.+||+.+++.+..+. ......+++|+|+|++++++ ..++. |.+|++....
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g 162 (331)
T 3u4y_A 85 SMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP--IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADG 162 (331)
T ss_dssp CCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE--CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTC
T ss_pred CccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE--CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCC
Confidence 444599999999999555443 89999999998887763 34557999999999866555 55578 9999987644
Q ss_pred eEE----EeeccccceeEEEEcCCCCEEEEEe-CCCcEEEEECCCCce---eeeeeccCCCccceeEEEEcCCCCCEEEE
Q psy8448 227 MLK----EFRGHSSFVNDITFTADGHSVLSAS-SDGTVKMWNLKTTEC---TSTFKSLGASDIAVNSIHLLPKNTEHFVV 298 (482)
Q Consensus 227 ~~~----~~~~~~~~i~~l~~~~~~~~l~~~~-~dg~i~i~d~~~~~~---~~~~~~~~~~~~~v~~i~~~~~~~~~l~~ 298 (482)
.+. ........+..++|+|+++++++++ .++.|.+||+.+++. +..+. ....+..++|+|++..++++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~----~~~~~~~~~~spdg~~l~v~ 238 (331)
T 3u4y_A 163 VLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG----TNNLPGTIVVSRDGSTVYVL 238 (331)
T ss_dssp CEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE----CSSCCCCEEECTTSSEEEEE
T ss_pred cEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc----CCCCCceEEECCCCCEEEEE
Confidence 331 1223445689999999999766555 688999999999887 65554 33567889999999434455
Q ss_pred EeCCCeEEEEEcC-CcE--EEEecCC----cccCcCEEEEEEcCCCCEEEEEeC-CcEEEEEeeh
Q psy8448 299 CNKTNTVVIMNMQ-GQI--VRSLSSG----KREGGDFLCCTTSPRGEWIYCVGE-DMVLVVRLIQ 355 (482)
Q Consensus 299 ~~~d~~i~i~d~~-~~~--~~~~~~~----~~~~~~v~~~~~~~~g~~l~~~~~-dg~i~iw~~~ 355 (482)
...++.|.+||.. ++. +..+... .........++|+|||++|++++. ++.|.+|++.
T Consensus 239 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~ 303 (331)
T 3u4y_A 239 TESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTIS 303 (331)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEec
Confidence 5567889999995 444 3333222 111122356899999999876554 6699966654
No 146
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.91 E-value=4.5e-22 Score=183.72 Aligned_cols=225 Identities=12% Similarity=0.145 Sum_probs=149.3
Q ss_pred CCeEEEEecC--CCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCeE--eEEeecccC
Q psy8448 121 DGFIEVWNFT--TGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ---SGKVKIWKIATGQC--LRKLEKAHS 193 (482)
Q Consensus 121 dg~v~iwd~~--~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~---dg~i~iwd~~~~~~--~~~~~~~~~ 193 (482)
++.|.+|+++ +++....... .+...+..++|+|+++ |++++. ++.|.+|++.+++. +..+ ..+.
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~-------~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~-~~~~ 85 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLL-------AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV-VAPG 85 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEE-------EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEE-EEES
T ss_pred CCCEEEEEEcCCCCeEEEeeee-------eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeee-ecCC
Confidence 4567777665 4443321111 1235678899999999 665554 68999999977653 3333 3466
Q ss_pred CCeEEEEEccCCCEEEEEE-CCCeEEEEeCCC-Cc--eEEEeec---------cccceeEEEEcCCCCEEEEEeCCCcEE
Q psy8448 194 LGVTCIQFSRDNSQILTAS-FDTYVRIHGLKS-GK--MLKEFRG---------HSSFVNDITFTADGHSVLSASSDGTVK 260 (482)
Q Consensus 194 ~~v~~i~~~~~~~~l~~~~-~dg~i~i~d~~~-~~--~~~~~~~---------~~~~i~~l~~~~~~~~l~~~~~dg~i~ 260 (482)
..+..++|+|++++|++++ .++.|.+|++.. +. .+..+.. +...+.+++|+|+++.+++...++.|.
T Consensus 86 ~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~ 165 (347)
T 3hfq_A 86 TPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVY 165 (347)
T ss_dssp CCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred CCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEE
Confidence 7788999999999998888 678999999963 22 2333321 122478899999999666666688999
Q ss_pred EEECC-CCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC---CcE--EEEecCCcc---cCcCEEEE
Q psy8448 261 MWNLK-TTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ---GQI--VRSLSSGKR---EGGDFLCC 331 (482)
Q Consensus 261 i~d~~-~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~---~~~--~~~~~~~~~---~~~~v~~~ 331 (482)
+||+. +++.................++|+|++..+++++..++.|.+|+++ ++. +..+..... ....+..+
T Consensus 166 ~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 245 (347)
T 3hfq_A 166 VYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAI 245 (347)
T ss_dssp EEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEE
T ss_pred EEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeE
Confidence 99998 4543322111112233567899999994455666788999999984 332 222222110 11457889
Q ss_pred EEcCCCCEEE-EEeCCcEEEEEee
Q psy8448 332 TTSPRGEWIY-CVGEDMVLVVRLI 354 (482)
Q Consensus 332 ~~~~~g~~l~-~~~~dg~i~iw~~ 354 (482)
+|+|||++|+ +...++.|.+|++
T Consensus 246 ~~spdG~~l~v~~~~~~~v~v~~~ 269 (347)
T 3hfq_A 246 RLSHDGHFLYVSNRGYNTLAVFAV 269 (347)
T ss_dssp EECTTSCEEEEEEETTTEEEEEEE
T ss_pred EECCCCCEEEEEeCCCCEEEEEEE
Confidence 9999999885 5566899996654
No 147
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.91 E-value=4.9e-23 Score=194.90 Aligned_cols=251 Identities=12% Similarity=0.114 Sum_probs=174.2
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCcee-------eccccccccccccccccEEEEEEcCCCCEEE----EE
Q psy8448 100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIR-------KDLKYQAQDNFMLMEEAVMSLAYSRDSEMLA----SG 168 (482)
Q Consensus 100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~-------~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~----~~ 168 (482)
...++.+++++++.++++++.++ +++|+....... .............|...|.+++|+|++++|+ ++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 44688999999999999999888 899875421110 0000000111123456899999999999999 77
Q ss_pred eCCCcEEEEEcCCC--------eEe--EEeecccCCCeEEEEEccC-CCEEEEEECCCeEEEEeCCCCceEEEeeccccc
Q psy8448 169 SQSGKVKIWKIATG--------QCL--RKLEKAHSLGVTCIQFSRD-NSQILTASFDTYVRIHGLKSGKMLKEFRGHSSF 237 (482)
Q Consensus 169 ~~dg~i~iwd~~~~--------~~~--~~~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 237 (482)
+.|+.|++||+.++ +.+ .....+|...|.+++|+|+ +.+|++++.||.|++||++++..+....+|...
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~ 194 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVA 194 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGC
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCc
Confidence 88999999998764 221 1222568999999999997 789999999999999999999777777788999
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccC----CCccceeEEEEcCCCCCEEEE-EeCCC------eEE
Q psy8448 238 VNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLG----ASDIAVNSIHLLPKNTEHFVV-CNKTN------TVV 306 (482)
Q Consensus 238 i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~~~v~~i~~~~~~~~~l~~-~~~d~------~i~ 306 (482)
|.+++|+|+|++|++|+.||.|++||++ ++....+.... .|...+.+++|++++ .++++ .+.+| .++
T Consensus 195 v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~-~~l~~~~~~dg~~~~~~~v~ 272 (434)
T 2oit_A 195 VTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTY-VFAIVYAAADGTLETSPDVV 272 (434)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETT-EEEEEEEETTCCSSSCCEEE
T ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCc-eEEEEEccCCCccCCCCceE
Confidence 9999999999999999999999999998 55554443211 233489999999976 44433 44443 389
Q ss_pred EEEcCCc------EEEEecCC----cccCcCEEEEEEcCCCCEEEEEeC-CcEEEEEe
Q psy8448 307 IMNMQGQ------IVRSLSSG----KREGGDFLCCTTSPRGEWIYCVGE-DMVLVVRL 353 (482)
Q Consensus 307 i~d~~~~------~~~~~~~~----~~~~~~v~~~~~~~~g~~l~~~~~-dg~i~iw~ 353 (482)
+|++... ....+... .....+...+.+-++.+++++++. .+.|.+..
T Consensus 273 i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~ 330 (434)
T 2oit_A 273 MALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILA 330 (434)
T ss_dssp EEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEE
T ss_pred EEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEE
Confidence 9998422 22222211 011222233444477777665554 45555443
No 148
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.91 E-value=1.3e-21 Score=181.04 Aligned_cols=237 Identities=11% Similarity=0.120 Sum_probs=184.4
Q ss_pred CcEEEEEEcCCCCEEEE-EeCCCeEEEEecCCCceeecccccccccc-ccccccEEEEEEcCCCCEEEEEe--CCCcEEE
Q psy8448 101 SHVECARFSPDGQYLIT-GSVDGFIEVWNFTTGKIRKDLKYQAQDNF-MLMEEAVMSLAYSRDSEMLASGS--QSGKVKI 176 (482)
Q Consensus 101 ~~v~~~~~s~~~~~l~s-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~~h~~~i~~l~~~~~~~~l~~~~--~dg~i~i 176 (482)
..+..++|+|+|++++. +..++.|.+||..+++....+........ ......+.+++|+|+++++++++ .++.|.+
T Consensus 89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~ 168 (353)
T 3vgz_A 89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWV 168 (353)
T ss_dssp SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEE
T ss_pred CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEE
Confidence 45788999999996654 45679999999999988766654321100 00011378899999999888776 4788999
Q ss_pred EEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeec----cccceeEEEEcCCCCEEEE
Q psy8448 177 WKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRG----HSSFVNDITFTADGHSVLS 252 (482)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~i~~l~~~~~~~~l~~ 252 (482)
||+.+++....+ ..+...+.+++|+|+++++++++.++.|.+||+.+++....+.. +...+.+++|+|+++++++
T Consensus 169 ~d~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 247 (353)
T 3vgz_A 169 VDGGNIKLKTAI-QNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFI 247 (353)
T ss_dssp EETTTTEEEEEE-CCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEE
T ss_pred EcCCCCceEEEe-cCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEE
Confidence 999999988877 33555688999999999999999999999999999998877764 4556888999999998777
Q ss_pred EeC-CCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEE
Q psy8448 253 ASS-DGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLC 330 (482)
Q Consensus 253 ~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~ 330 (482)
++. ++.|.+||+.+++....+.. .. ...++|+|++..++++...++.|.+||. +++.+..+.. ...+.+
T Consensus 248 ~~~~~~~v~~~d~~~~~~~~~~~~---~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~----~~~~~~ 318 (353)
T 3vgz_A 248 TDSKAAEVLVVDTRNGNILAKVAA---PE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT----PTHPNS 318 (353)
T ss_dssp EESSSSEEEEEETTTCCEEEEEEC---SS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC----CSEEEE
T ss_pred EeCCCCEEEEEECCCCcEEEEEEc---CC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec----CCCCCe
Confidence 765 48999999999988877763 22 2569999999445566667999999999 5776666654 345789
Q ss_pred EEEcCCCCEEEEEeCCc
Q psy8448 331 CTTSPRGEWIYCVGEDM 347 (482)
Q Consensus 331 ~~~~~~g~~l~~~~~dg 347 (482)
++|+|+|++|+++..++
T Consensus 319 ~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 319 LALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEECTTSCEEEEEEECC
T ss_pred EEEcCCCCEEEEEEccc
Confidence 99999999888776654
No 149
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=2.4e-22 Score=203.80 Aligned_cols=277 Identities=14% Similarity=0.144 Sum_probs=192.3
Q ss_pred CCCCceeeccCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCC-----Cceeecc
Q psy8448 64 LPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTT-----GKIRKDL 138 (482)
Q Consensus 64 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~-----~~~~~~~ 138 (482)
.|++..+...++.+.+|+..... ...+ ..+...+.+++|||||++|+++ .++.|++||+.+ ++.....
T Consensus 90 spd~~~~~~~~~~i~~~d~~~~~-----~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~ 162 (706)
T 2z3z_A 90 AGRGLVVLFTQGGLVGFDMLARK-----VTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVT 162 (706)
T ss_dssp TTTTEEEEEETTEEEEEETTTTE-----EEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESC
T ss_pred CCCCeEEEEECCEEEEEECCCCc-----eEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEec
Confidence 34533444455677777764332 1122 2567788999999999999986 579999999988 7655433
Q ss_pred ccccccc------cccccccEEEEEEcCCCCEEEEEe---------------------------------CCCcEEEEEc
Q psy8448 139 KYQAQDN------FMLMEEAVMSLAYSRDSEMLASGS---------------------------------QSGKVKIWKI 179 (482)
Q Consensus 139 ~~~~~~~------~~~h~~~i~~l~~~~~~~~l~~~~---------------------------------~dg~i~iwd~ 179 (482)
....... ...+...+.+++|+|||++|++++ .+..|.+||+
T Consensus 163 ~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~ 242 (706)
T 2z3z_A 163 IDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHL 242 (706)
T ss_dssp SCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEET
T ss_pred cCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEEC
Confidence 2221100 000112358899999999999987 4467999999
Q ss_pred CCCeEeEEeec-ccCCCeEEEEEccCCCEEEEEECCC-----eEEEEeCCCCceEEEee-c-ccc---ceeEEEEcC--C
Q psy8448 180 ATGQCLRKLEK-AHSLGVTCIQFSRDNSQILTASFDT-----YVRIHGLKSGKMLKEFR-G-HSS---FVNDITFTA--D 246 (482)
Q Consensus 180 ~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~-~-~~~---~i~~l~~~~--~ 246 (482)
.+++....... .+...+.+++|+|+|+.|++++.++ .|++||+.+++....+. . +.. .+.+++|+| +
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~d 322 (706)
T 2z3z_A 243 ATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSN 322 (706)
T ss_dssp TTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCS
T ss_pred CCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCC
Confidence 98876544321 4567799999999999999887775 89999999984443332 1 222 246789999 9
Q ss_pred CCEEEEEeCCCcEEEEECC-CCceeeeeeccCCCccceeE-EEEcCCCCCEEEEEeCCC----eEEEEEcCCcEEEEecC
Q psy8448 247 GHSVLSASSDGTVKMWNLK-TTECTSTFKSLGASDIAVNS-IHLLPKNTEHFVVCNKTN----TVVIMNMQGQIVRSLSS 320 (482)
Q Consensus 247 ~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~v~~-i~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~~~~~~ 320 (482)
|+++++++.++.+++|+++ ++.....+. .+...+.. ++|+|++..++++++.++ .|..||..+.....+..
T Consensus 323 g~~l~~~~~~g~~~l~~~~~~~~~~~~l~---~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 399 (706)
T 2z3z_A 323 NQFIWQSRRDGWNHLYLYDTTGRLIRQVT---KGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLTP 399 (706)
T ss_dssp SEEEEEECTTSSCEEEEEETTSCEEEECC---CSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESCC
T ss_pred CEEEEEEccCCccEEEEEECCCCEEEecC---CCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceeccC
Confidence 9999999999999999876 555555554 55666766 799999954555566555 66777775444455442
Q ss_pred CcccCcCEEEEEEcCCCCEEEEEeCC----cEEEEEee
Q psy8448 321 GKREGGDFLCCTTSPRGEWIYCVGED----MVLVVRLI 354 (482)
Q Consensus 321 ~~~~~~~v~~~~~~~~g~~l~~~~~d----g~i~iw~~ 354 (482)
...+.+++|+|||++++..+.+ +.+++|+.
T Consensus 400 ----~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~ 433 (706)
T 2z3z_A 400 ----ESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNI 433 (706)
T ss_dssp ----SSSEEEEEECTTSSEEEEEEECSSCSCEEEEEES
T ss_pred ----CCceEEEEECCCCCEEEEEecCCCCCcEEEEEEC
Confidence 4568899999999998876543 56885554
No 150
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.90 E-value=2.1e-22 Score=199.36 Aligned_cols=233 Identities=13% Similarity=0.118 Sum_probs=167.6
Q ss_pred CCCcEEEEEEcCCCCEEEEEeC-CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC---CCcE
Q psy8448 99 SKSHVECARFSPDGQYLITGSV-DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ---SGKV 174 (482)
Q Consensus 99 h~~~v~~~~~s~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~---dg~i 174 (482)
+..+|++++|+|||+.||+++. ||++.||++.+++...... . +...+..++|+|+ +.+++++. +...
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~-~-------~~~~~~~~~~spd-~~l~~~~~~~g~~~~ 90 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNR-E-------PINSVLDPHYGVG-RVILVRDVSKGAEQH 90 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCS-S-------CCSEECEECTTCS-EEEEEEECSTTSCCE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeec-c-------cccccccccCCCC-eEEEEeccCCCCcce
Confidence 3557999999999999999886 9999999986655433221 1 1257899999999 77777765 4556
Q ss_pred EEEEcCC--CeEeEEeecccCCCeEEEEEccCCCE-EEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEE
Q psy8448 175 KIWKIAT--GQCLRKLEKAHSLGVTCIQFSRDNSQ-ILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVL 251 (482)
Q Consensus 175 ~iwd~~~--~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~ 251 (482)
.+|.+.. ......+. ....+...+|+|+++. +++...++.+.+||+.+++.......+. .+++|+|||++|+
T Consensus 91 ~l~~~~~~~~g~~~~l~--~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la 165 (582)
T 3o4h_A 91 ALFKVNTSRPGEEQRLE--AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIA 165 (582)
T ss_dssp EEEEEETTSTTCCEECT--TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEE
T ss_pred EEEEEeccCCCcccccc--CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEE
Confidence 6665533 22222332 2234556788888854 3444445556699999887655544333 8899999999999
Q ss_pred EEeCC----CcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCC--eEEEEEcCCcEEEEecCCcccC
Q psy8448 252 SASSD----GTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTN--TVVIMNMQGQIVRSLSSGKREG 325 (482)
Q Consensus 252 ~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~ 325 (482)
+++.+ +.|++||+.+++.. .+. .+...+..++|+|+| +.++++..++ .|++||+.+.....+..+ .
T Consensus 166 ~~~~~~~~~~~i~~~d~~~g~~~-~l~---~~~~~~~~~~~SpDG-~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~---~ 237 (582)
T 3o4h_A 166 GLGFFGGGRVSLFTSNLSSGGLR-VFD---SGEGSFSSASISPGM-KVTAGLETAREARLVTVDPRDGSVEDLELP---S 237 (582)
T ss_dssp EEEEEETTEEEEEEEETTTCCCE-EEC---CSSCEEEEEEECTTS-CEEEEEECSSCEEEEEECTTTCCEEECCCS---C
T ss_pred EEEEcCCCCeEEEEEcCCCCCce-Eee---cCCCccccceECCCC-CEEEEccCCCeeEEEEEcCCCCcEEEccCC---C
Confidence 88776 77999999988754 333 667788999999999 7777888888 899999954444444333 3
Q ss_pred cCEEEEE--------EcCCCCEEEEEeCCcEEEEEe
Q psy8448 326 GDFLCCT--------TSPRGEWIYCVGEDMVLVVRL 353 (482)
Q Consensus 326 ~~v~~~~--------~~~~g~~l~~~~~dg~i~iw~ 353 (482)
..+..++ |+|||..+++++.|+.+++|+
T Consensus 238 ~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~ 273 (582)
T 3o4h_A 238 KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI 273 (582)
T ss_dssp SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEE
Confidence 3444455 999999999999999999554
No 151
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.90 E-value=9.5e-22 Score=180.62 Aligned_cols=260 Identities=15% Similarity=0.155 Sum_probs=187.9
Q ss_pred CCccccccccccccccccceeeecCCCC-cEEEEEEcCCCCEEE-EEeCCCeEEEEecCCCceeeccccccccccccccc
Q psy8448 74 RGKAAMKDQEEEKYPTQLSKQIKFGSKS-HVECARFSPDGQYLI-TGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEE 151 (482)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~ 151 (482)
++.+.+|+..... ....+..++.. .+.+++|+|+|++++ ++..++.|.+||+.+++....+...... .|..
T Consensus 10 ~~~v~~~d~~~~~----~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~---~~~~ 82 (337)
T 1pby_B 10 PDKLVVIDTEKMA----VDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE---ERVK 82 (337)
T ss_dssp TTEEEEEETTTTE----EEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT---EEEE
T ss_pred CCeEEEEECCCCc----EEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc---cccc
Confidence 4556666654322 22333334433 478899999998764 5556789999999998877655433100 0123
Q ss_pred cEEEEEEcCCCCEEEEEe------------CCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEE
Q psy8448 152 AVMSLAYSRDSEMLASGS------------QSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRI 219 (482)
Q Consensus 152 ~i~~l~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i 219 (482)
.+..++|+|++++|++++ .++.|.+||+.+++....+. ....+.+++|+|++++|+++ ++.|.+
T Consensus 83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE--APRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE--CCSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe--CCCCcceeEECCCCCEEEEe--CCeEEE
Confidence 567899999999998886 57999999999988877764 24567889999999988888 689999
Q ss_pred EeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCC------------------------cEEEEECCCCceeeeeec
Q psy8448 220 HGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDG------------------------TVKMWNLKTTECTSTFKS 275 (482)
Q Consensus 220 ~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg------------------------~i~i~d~~~~~~~~~~~~ 275 (482)
||+.+++....+..+.. ...+.|+|++..++..+..+ .|.+||+.+++.. .+.
T Consensus 159 ~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~- 235 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MRE- 235 (337)
T ss_dssp EETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEE-
T ss_pred EECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-Eee-
Confidence 99999988877764431 11237889988766544332 4689999998765 222
Q ss_pred cCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448 276 LGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLI 354 (482)
Q Consensus 276 ~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~ 354 (482)
...+...+.+++|+|++ ..++++ ++.|.+||+ +++.+..+.. ...+.+++|+|+|++|++++.++.|++|++
T Consensus 236 ~~~~~~~~~~~~~s~dg-~~l~~~--~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~ 308 (337)
T 1pby_B 236 VRIMDVFYFSTAVNPAK-TRAFGA--YNVLESFDLEKNASIKRVPL----PHSYYSVNVSTDGSTVWLGGALGDLAAYDA 308 (337)
T ss_dssp EEECSSCEEEEEECTTS-SEEEEE--ESEEEEEETTTTEEEEEEEC----SSCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred cCCCCCceeeEEECCCC-CEEEEe--CCeEEEEECCCCcCcceecC----CCceeeEEECCCCCEEEEEcCCCcEEEEEC
Confidence 12445567889999998 666666 799999999 4666666553 235678999999999999999999995443
No 152
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.90 E-value=9.1e-21 Score=175.97 Aligned_cols=242 Identities=15% Similarity=0.213 Sum_probs=166.9
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCC----CeEEEEecCC--CceeeccccccccccccccccEEEEEEcCCCCEEEEEe-CC
Q psy8448 99 SKSHVECARFSPDGQYLITGSVD----GFIEVWNFTT--GKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS-QS 171 (482)
Q Consensus 99 h~~~v~~~~~s~~~~~l~s~~~d----g~v~iwd~~~--~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~-~d 171 (482)
+...+..++|+|+|++|++++.+ +.|.+|++.. ++........ .+...+..+++ ++++|++++ .+
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~------~~~~~p~~~~~--dg~~l~~~~~~~ 119 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQK------TMGADPCYLTT--NGKNIVTANYSG 119 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEE------CSSSCEEEEEE--CSSEEEEEETTT
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEec------cCCCCcEEEEE--CCCEEEEEECCC
Confidence 66778889999999999998875 7999999875 3332211111 12345677777 788777776 57
Q ss_pred CcEEEEEcCCCeEeEEe----e-c--------ccCCCeEEEEEccCCCEEEEEEC-CCeEEEEeCCCCce------E---
Q psy8448 172 GKVKIWKIATGQCLRKL----E-K--------AHSLGVTCIQFSRDNSQILTASF-DTYVRIHGLKSGKM------L--- 228 (482)
Q Consensus 172 g~i~iwd~~~~~~~~~~----~-~--------~~~~~v~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~~------~--- 228 (482)
+.|.+|++.....+..+ . . .+...+.+++|+|+|+++++++. ++.|.+|++..... +
T Consensus 120 ~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~ 199 (361)
T 3scy_A 120 GSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTK 199 (361)
T ss_dssp TEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEE
T ss_pred CEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeec
Confidence 89999999754332211 0 0 11233588999999997766654 78999998875431 1
Q ss_pred ----EEeeccccceeEEEEcCCCCEEEEEe-CCCcEEEEECCCCce--eeeeeccCCCccceeEEEEcCCCCCEEEEEeC
Q psy8448 229 ----KEFRGHSSFVNDITFTADGHSVLSAS-SDGTVKMWNLKTTEC--TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK 301 (482)
Q Consensus 229 ----~~~~~~~~~i~~l~~~~~~~~l~~~~-~dg~i~i~d~~~~~~--~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~ 301 (482)
.....+...+..++|+|+++++++++ .++.|.+||+.+++. +..+.....+......++|+|++ ++++++..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg-~~l~v~~~ 278 (361)
T 3scy_A 200 GTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDG-KYLYASNR 278 (361)
T ss_dssp EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTS-SEEEEEEC
T ss_pred ccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCC-CEEEEECC
Confidence 11223455678999999999888777 689999999987654 23333222333456899999999 66655554
Q ss_pred --CCeEEEEEcC---Cc--EEEEecCCcccCcCEEEEEEcCCCCEEEEEe-CCcEEEEEe
Q psy8448 302 --TNTVVIMNMQ---GQ--IVRSLSSGKREGGDFLCCTTSPRGEWIYCVG-EDMVLVVRL 353 (482)
Q Consensus 302 --d~~i~i~d~~---~~--~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~-~dg~i~iw~ 353 (482)
++.|.+|+++ ++ .+..+.. ...+..++|+|+|++|++++ .++.+.+|+
T Consensus 279 ~~~~~i~v~~~~~~~g~~~~~~~~~~----g~~~~~~~~spdg~~l~~~~~~~~~v~v~~ 334 (361)
T 3scy_A 279 LKADGVAIFKVDETNGTLTKVGYQLT----GIHPRNFIITPNGKYLLVACRDTNVIQIFE 334 (361)
T ss_dssp SSSCEEEEEEECTTTCCEEEEEEEEC----SSCCCEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEEEcCCCCcEEEeeEecC----CCCCceEEECCCCCEEEEEECCCCCEEEEE
Confidence 5899999984 33 2223322 34567899999999999887 678999763
No 153
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.90 E-value=2.2e-21 Score=179.13 Aligned_cols=247 Identities=14% Similarity=0.177 Sum_probs=169.2
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe-CCCc
Q psy8448 98 GSKSHVECARFSPDGQYLITGSV---DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS-QSGK 173 (482)
Q Consensus 98 ~h~~~v~~~~~s~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~-~dg~ 173 (482)
.+...+..++|+|+|+ |++++. ++.|.+|++.+++...... ...+...+..++|+|++++|++++ .++.
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~------~~~~~~~p~~~a~spdg~~l~~~~~~~~~ 109 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNT------VVAPGTPPAYVAVDEARQLVYSANYHKGT 109 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEE------EEEESCCCSEEEEETTTTEEEEEETTTTE
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeee------eecCCCCCEEEEECCCCCEEEEEeCCCCE
Confidence 4456788899999999 555443 6899999997765322111 111346788999999999998888 6789
Q ss_pred EEEEEcCC-Ce--EeEEeecc--------cCCCeEEEEEccCCCEEEEEECCCeEEEEeCC-CCceEE--Eeec-cccce
Q psy8448 174 VKIWKIAT-GQ--CLRKLEKA--------HSLGVTCIQFSRDNSQILTASFDTYVRIHGLK-SGKMLK--EFRG-HSSFV 238 (482)
Q Consensus 174 i~iwd~~~-~~--~~~~~~~~--------~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~--~~~~-~~~~i 238 (482)
|.+|++.. +. .+..+... ....+.+++|+|+++.+++...++.|.+|++. +++... .+.. ....+
T Consensus 110 v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p 189 (347)
T 3hfq_A 110 AEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGP 189 (347)
T ss_dssp EEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCE
T ss_pred EEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCC
Confidence 99999963 32 23333111 12248899999999966666668899999998 454322 2222 23367
Q ss_pred eEEEEcCCCCEEEEE-eCCCcEEEEECCC--Cce--eeeeeccCC---CccceeEEEEcCCCCCEEEEEeCCCeEEEEEc
Q psy8448 239 NDITFTADGHSVLSA-SSDGTVKMWNLKT--TEC--TSTFKSLGA---SDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM 310 (482)
Q Consensus 239 ~~l~~~~~~~~l~~~-~~dg~i~i~d~~~--~~~--~~~~~~~~~---~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~ 310 (482)
..++|+|+|++++++ ..++.|.+|++.. ++. ...+..... ....+..++|+|+|..++++...++.|.+|++
T Consensus 190 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~ 269 (347)
T 3hfq_A 190 RHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAV 269 (347)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEE
T ss_pred ceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEE
Confidence 889999999976664 5678999999874 432 222221111 11458899999999445567777999999998
Q ss_pred C--C--cEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCC-cEEEEEee
Q psy8448 311 Q--G--QIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGED-MVLVVRLI 354 (482)
Q Consensus 311 ~--~--~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~d-g~i~iw~~ 354 (482)
. + ..+..+..+ ...+..++|+|||++|++++.+ +.+.+|++
T Consensus 270 ~~~g~~~~~~~~~~~---~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 270 TADGHLTLIQQISTE---GDFPRDFDLDPTEAFVVVVNQNTDNATLYAR 315 (347)
T ss_dssp CGGGCEEEEEEEECS---SSCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCCcEEEeEEEecC---CCCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence 4 2 223333322 3456899999999999888764 89997754
No 154
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.89 E-value=1.7e-21 Score=179.86 Aligned_cols=232 Identities=12% Similarity=0.111 Sum_probs=173.2
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEE-EeCCCcEEEEEcCCCe
Q psy8448 105 CARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLAS-GSQSGKVKIWKIATGQ 183 (482)
Q Consensus 105 ~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~-~~~dg~i~iwd~~~~~ 183 (482)
.+++++++.++++++.++.|++||+.+++....+.... ...+..++|+|+++++++ +..++.|.+||+.+++
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~-------~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~ 76 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD-------KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK 76 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSS-------CCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCC-------CCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc
Confidence 45678889999999999999999999988776655431 124678999999986655 4568999999999998
Q ss_pred EeEEeeccc-----CCCeEEEEEccCCCEEEEEECC------------CeEEEEeCCCCce---EEEeeccccceeEEEE
Q psy8448 184 CLRKLEKAH-----SLGVTCIQFSRDNSQILTASFD------------TYVRIHGLKSGKM---LKEFRGHSSFVNDITF 243 (482)
Q Consensus 184 ~~~~~~~~~-----~~~v~~i~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~---~~~~~~~~~~i~~l~~ 243 (482)
....+...+ ...+..++|+|+|+++++++.+ +.|.+||+.+++. +..+. +...+.+++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~ 155 (349)
T 1jmx_B 77 NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRA 155 (349)
T ss_dssp EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEE
T ss_pred EEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeE
Confidence 887764333 2337889999999999998865 8999999988543 33333 3446889999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCC---------------------------------------------
Q psy8448 244 TADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGA--------------------------------------------- 278 (482)
Q Consensus 244 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--------------------------------------------- 278 (482)
+|+++ +++++ +.|.+||+.+++....+.....
T Consensus 156 s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 232 (349)
T 1jmx_B 156 ADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLL 232 (349)
T ss_dssp CTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEE
T ss_pred CCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccc
Confidence 99999 66554 3499999999887665542100
Q ss_pred --------------------CccceeEEEEcC-CCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCC
Q psy8448 279 --------------------SDIAVNSIHLLP-KNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPR 336 (482)
Q Consensus 279 --------------------~~~~v~~i~~~~-~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~ 336 (482)
....+..++++| ++ ..++++ ++.|.+||+ +++.+..+... ..+.+++|+|+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg-~~l~~~--~~~v~~~d~~~~~~~~~~~~~----~~~~~~~~s~d 305 (349)
T 1jmx_B 233 YGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP-NQIYGV--LNRLAKYDLKQRKLIKAANLD----HTYYCVAFDKK 305 (349)
T ss_dssp EEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT-TEEEEE--ESEEEEEETTTTEEEEEEECS----SCCCEEEECSS
T ss_pred eeEEEEeccCCcEEecccccCCCcceeeEecCCCC-CEEEEE--cCeEEEEECccCeEEEEEcCC----CCccceEECCC
Confidence 001345667789 87 666666 889999999 56666666532 34678999999
Q ss_pred CCEEEEEeCCcEEEEEee
Q psy8448 337 GEWIYCVGEDMVLVVRLI 354 (482)
Q Consensus 337 g~~l~~~~~dg~i~iw~~ 354 (482)
|++|++++.++.|.+|+.
T Consensus 306 g~~l~~~~~~~~v~v~d~ 323 (349)
T 1jmx_B 306 GDKLYLGGTFNDLAVFNP 323 (349)
T ss_dssp SSCEEEESBSSEEEEEET
T ss_pred CCEEEEecCCCeEEEEec
Confidence 999999989999995543
No 155
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.89 E-value=4.9e-22 Score=201.86 Aligned_cols=261 Identities=10% Similarity=0.091 Sum_probs=177.6
Q ss_pred CCccccccccccccccccceeeecCCCC---cEEEEEEcCCCCEEEEEeC---------CCeEEEEecCCCceeeccccc
Q psy8448 74 RGKAAMKDQEEEKYPTQLSKQIKFGSKS---HVECARFSPDGQYLITGSV---------DGFIEVWNFTTGKIRKDLKYQ 141 (482)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~s~~~~~l~s~~~---------dg~v~iwd~~~~~~~~~~~~~ 141 (482)
++.+.+|+..... ...+..+|.. .|.+++|||||++|++++. ++.|++||+.+++.......
T Consensus 35 d~~i~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l- 108 (719)
T 1z68_A 35 DNNIVLYNIETGQ-----SYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL- 108 (719)
T ss_dssp TSCEEEEESSSCC-----EEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC-
T ss_pred CCCEEEEEcCCCc-----EEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec-
Confidence 4556666654332 2233333333 4899999999999998876 68999999998876321111
Q ss_pred cccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCe-----------------EEEEEccC
Q psy8448 142 AQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGV-----------------TCIQFSRD 204 (482)
Q Consensus 142 ~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v-----------------~~i~~~~~ 204 (482)
...+..++|+|||+.|+++. ++.|++||+.+++.......++...+ .+++|+||
T Consensus 109 --------~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPD 179 (719)
T 1z68_A 109 --------PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPN 179 (719)
T ss_dssp --------CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTT
T ss_pred --------CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCC
Confidence 13578899999999999986 78999999988876543322333222 48999999
Q ss_pred CCEEEEEECCC----------------------------------eEEEEeCCCCceE---E-----EeeccccceeEEE
Q psy8448 205 NSQILTASFDT----------------------------------YVRIHGLKSGKML---K-----EFRGHSSFVNDIT 242 (482)
Q Consensus 205 ~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~---~-----~~~~~~~~i~~l~ 242 (482)
|++|++++.|. .|++||+.+++.. . .+.+|...+..++
T Consensus 180 G~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (719)
T 1z68_A 180 GKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLT 259 (719)
T ss_dssp SSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEE
T ss_pred CCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeE
Confidence 99999887552 7899999887653 1 2335778899999
Q ss_pred EcCCCCEEEEEeCC----CcEEEEE----CCCCceeeeee-ccCCCcccee-----EEEEcCCCCCEEEE-EeCCC--eE
Q psy8448 243 FTADGHSVLSASSD----GTVKMWN----LKTTECTSTFK-SLGASDIAVN-----SIHLLPKNTEHFVV-CNKTN--TV 305 (482)
Q Consensus 243 ~~~~~~~l~~~~~d----g~i~i~d----~~~~~~~~~~~-~~~~~~~~v~-----~i~~~~~~~~~l~~-~~~d~--~i 305 (482)
|+||++++++.... ..|.+|| ..++++...+. ....+...+. .+.|+|+|..+++. +..++ .|
T Consensus 260 ~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l 339 (719)
T 1z68_A 260 WVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHI 339 (719)
T ss_dssp ESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEE
T ss_pred EeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEE
Confidence 99998776664432 2488899 77776554441 0014455555 78999999555543 44555 56
Q ss_pred EEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCC-----cEEEEEe
Q psy8448 306 VIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGED-----MVLVVRL 353 (482)
Q Consensus 306 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~d-----g~i~iw~ 353 (482)
.+||+.+.....+..+ ...+..+.+. +++.|+..+.+ +...+|.
T Consensus 340 ~~~~~~~~~~~~lt~~---~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~ 388 (719)
T 1z68_A 340 HYIKDTVENAIQITSG---KWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYR 388 (719)
T ss_dssp EEESSCSTTCEECSCS---SSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEE
T ss_pred EEEECCCCceEecccC---ceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEE
Confidence 6777755445555543 4557777777 88888776665 7778554
No 156
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.88 E-value=5.2e-21 Score=179.45 Aligned_cols=240 Identities=13% Similarity=0.045 Sum_probs=159.6
Q ss_pred CCCCcEEE-----EEEcCCCCEEEEEeC-CC--eEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe
Q psy8448 98 GSKSHVEC-----ARFSPDGQYLITGSV-DG--FIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS 169 (482)
Q Consensus 98 ~h~~~v~~-----~~~s~~~~~l~s~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~ 169 (482)
.|...... .+|||||++|+.++. +| .|.+||+.+++.......+ ...+..+.|+|+++.|+.++
T Consensus 28 ~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~--------~~~~~~~~~spdg~~l~~~~ 99 (388)
T 3pe7_A 28 PPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGR--------GDNTFGGFLSPDDDALFYVK 99 (388)
T ss_dssp CTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSS--------CBCSSSCEECTTSSEEEEEE
T ss_pred CCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCC--------CCCccceEEcCCCCEEEEEe
Confidence 45555555 789999999998886 66 4888999888765544322 23444678999999999999
Q ss_pred CCCcEEEEEcCCCeEeEEeecccCCCeEEEE--EccCCCEEEEE----------------------ECCCeEEEEeCCCC
Q psy8448 170 QSGKVKIWKIATGQCLRKLEKAHSLGVTCIQ--FSRDNSQILTA----------------------SFDTYVRIHGLKSG 225 (482)
Q Consensus 170 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~--~~~~~~~l~~~----------------------~~dg~i~i~d~~~~ 225 (482)
.++.|++||+.+++....+ ..+...+.... ++|++.+++.. ..+..|.+||+.++
T Consensus 100 ~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g 178 (388)
T 3pe7_A 100 DGRNLMRVDLATLEENVVY-QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG 178 (388)
T ss_dssp TTTEEEEEETTTCCEEEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC
T ss_pred CCCeEEEEECCCCcceeee-echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC
Confidence 9999999999998876655 33444443333 48899888743 23468999999988
Q ss_pred ceEEEeeccccceeEEEEcC-CCCEEEEEeCC------CcEEEEECCCCceeeeeeccCCCc-cceeEEEEcCCCCCEEE
Q psy8448 226 KMLKEFRGHSSFVNDITFTA-DGHSVLSASSD------GTVKMWNLKTTECTSTFKSLGASD-IAVNSIHLLPKNTEHFV 297 (482)
Q Consensus 226 ~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~ 297 (482)
+... +..+...+..+.|+| +++.|+....+ ..|.++|...++...... ... ..+..+.|+|+|..+++
T Consensus 179 ~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~~~~spdg~~l~~ 254 (388)
T 3pe7_A 179 ESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKT---HAEGESCTHEFWVPDGSALVY 254 (388)
T ss_dssp CEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCC---CCTTEEEEEEEECTTSSCEEE
T ss_pred ceEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeee---CCCCcccccceECCCCCEEEE
Confidence 7544 444667789999999 99998887753 378888887655433221 221 35778999999955545
Q ss_pred EEeCCC----eEEEEEcCCcEEEEecCCcccCc---CEEEEEEcCCCCEEEEE---------eCCcEEE
Q psy8448 298 VCNKTN----TVVIMNMQGQIVRSLSSGKREGG---DFLCCTTSPRGEWIYCV---------GEDMVLV 350 (482)
Q Consensus 298 ~~~~d~----~i~i~d~~~~~~~~~~~~~~~~~---~v~~~~~~~~g~~l~~~---------~~dg~i~ 350 (482)
++..++ .|++||+.+.....+........ .....+|+|||+.|+.. ..+..|+
T Consensus 255 ~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~ 323 (388)
T 3pe7_A 255 VSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLY 323 (388)
T ss_dssp EEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEE
T ss_pred EecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEE
Confidence 544332 39999995333222221110000 01123789999988854 3455677
No 157
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.88 E-value=3.7e-20 Score=175.22 Aligned_cols=211 Identities=13% Similarity=0.069 Sum_probs=149.7
Q ss_pred CCCCcEEEEEEcCCCCEEE----EEeCCCeEEEEecCCCcee---eccccccccccccccccEEEEEEcCC-CCEEEEEe
Q psy8448 98 GSKSHVECARFSPDGQYLI----TGSVDGFIEVWNFTTGKIR---KDLKYQAQDNFMLMEEAVMSLAYSRD-SEMLASGS 169 (482)
Q Consensus 98 ~h~~~v~~~~~s~~~~~l~----s~~~dg~v~iwd~~~~~~~---~~~~~~~~~~~~~h~~~i~~l~~~~~-~~~l~~~~ 169 (482)
.|...|++++|+|+|++|+ +|+.|+.|+|||+.++... ..........+.+|...|.+++|+|+ +++|++++
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s 169 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence 5778899999999999999 7888999999998764100 00001112334568899999999997 88999999
Q ss_pred CCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeecc-------ccceeEEE
Q psy8448 170 QSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGH-------SSFVNDIT 242 (482)
Q Consensus 170 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~i~~l~ 242 (482)
.||+|++||++++...... ..|...|.+++|+|+|++|++|+.||.|++||++ ++....+..| ...|.+++
T Consensus 170 ~Dg~v~iwD~~~~~~~~~~-~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~ 247 (434)
T 2oit_A 170 ADGSIAVLQVTETVKVCAT-LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVL 247 (434)
T ss_dssp TTSCEEEEEESSSEEEEEE-ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEE
T ss_pred CCCeEEEEEcCCCcceeec-cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEE
Confidence 9999999999998766555 5688899999999999999999999999999998 6655555433 33799999
Q ss_pred EcCCCCEEEEE-eCCC------cEEEEECCCCce-----eeeeecc----CCCccceeEEEEcCCCCCEEEEEeCCCeEE
Q psy8448 243 FTADGHSVLSA-SSDG------TVKMWNLKTTEC-----TSTFKSL----GASDIAVNSIHLLPKNTEHFVVCNKTNTVV 306 (482)
Q Consensus 243 ~~~~~~~l~~~-~~dg------~i~i~d~~~~~~-----~~~~~~~----~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~ 306 (482)
|++++.++++. +.+| .+++|++++.+. ...+... .....+...+...++..-++++.+..+.|.
T Consensus 248 w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~ 327 (434)
T 2oit_A 248 WIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVS 327 (434)
T ss_dssp EEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCE
T ss_pred EecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCcee
Confidence 99988776543 3443 389999986531 1111111 012223334444566633344444455566
Q ss_pred EEEc
Q psy8448 307 IMNM 310 (482)
Q Consensus 307 i~d~ 310 (482)
+...
T Consensus 328 vl~~ 331 (434)
T 2oit_A 328 ILAR 331 (434)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6665
No 158
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.88 E-value=1e-21 Score=199.55 Aligned_cols=238 Identities=12% Similarity=0.106 Sum_probs=164.0
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC---------CCcEE
Q psy8448 105 CARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ---------SGKVK 175 (482)
Q Consensus 105 ~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~---------dg~i~ 175 (482)
+++|+|+|+++++ +.|+.|++||+.+++....+..+... ...+.+++|+|||++|++++. ++.|+
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~ 93 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMK-----SVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYY 93 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHH-----TTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEcccccc-----ccceeeEEECCCCCeEEEEecCceeEEeecceEEE
Confidence 6789999965554 46999999999998866544332110 014889999999999999876 78999
Q ss_pred EEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEe-eccccce----------------
Q psy8448 176 IWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEF-RGHSSFV---------------- 238 (482)
Q Consensus 176 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i---------------- 238 (482)
+||+.+++.+... .....+..++|+|||+.|+.+. ++.|++||+.+++..... .++...|
T Consensus 94 ~~d~~~g~~~~~~--~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~ 170 (719)
T 1z68_A 94 IYDLSNGEFVRGN--ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLAT 170 (719)
T ss_dssp EEETTTTEECCSS--CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCS
T ss_pred EEECCCCccccce--ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccC
Confidence 9999988763111 1124688999999999999986 789999999888765432 2222212
Q ss_pred -eEEEEcCCCCEEEEEeCCC----------------------------------cEEEEECCCCcee--eeee---ccCC
Q psy8448 239 -NDITFTADGHSVLSASSDG----------------------------------TVKMWNLKTTECT--STFK---SLGA 278 (482)
Q Consensus 239 -~~l~~~~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~--~~~~---~~~~ 278 (482)
.+++|+|||++|++++.|. .|++||+.+++.. ..+. .+..
T Consensus 171 ~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 250 (719)
T 1z68_A 171 KYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIAS 250 (719)
T ss_dssp SCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHT
T ss_pred cccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCC
Confidence 4899999999999887552 7889999987642 1111 1125
Q ss_pred CccceeEEEEcCCCCCEEEEEeCC----CeEEEEE----cCCcEEEEecC--CcccCcCEE-----EEEEcCCCCEEEE-
Q psy8448 279 SDIAVNSIHLLPKNTEHFVVCNKT----NTVVIMN----MQGQIVRSLSS--GKREGGDFL-----CCTTSPRGEWIYC- 342 (482)
Q Consensus 279 ~~~~v~~i~~~~~~~~~l~~~~~d----~~i~i~d----~~~~~~~~~~~--~~~~~~~v~-----~~~~~~~g~~l~~- 342 (482)
+...+..++|+|++ .++++.... ..|.+|| ..+.....+.. ...+...+. .++|+|||+.|+.
T Consensus 251 ~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 329 (719)
T 1z68_A 251 SDYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKI 329 (719)
T ss_dssp SCEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEE
T ss_pred CcceEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEE
Confidence 67789999999996 666664432 2488899 64332222220 001133343 6899999996654
Q ss_pred -EeCCcEEEEE
Q psy8448 343 -VGEDMVLVVR 352 (482)
Q Consensus 343 -~~~dg~i~iw 352 (482)
...+|...||
T Consensus 330 ~~~~~g~~~l~ 340 (719)
T 1z68_A 330 FSDKDGYKHIH 340 (719)
T ss_dssp EECTTSCEEEE
T ss_pred EEccCCceEEE
Confidence 5567766655
No 159
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.88 E-value=2.1e-19 Score=166.71 Aligned_cols=229 Identities=15% Similarity=0.189 Sum_probs=151.8
Q ss_pred CCEEEEEe----CCCeEEEEecC--CCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC----CcEEEEEcCC
Q psy8448 112 GQYLITGS----VDGFIEVWNFT--TGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS----GKVKIWKIAT 181 (482)
Q Consensus 112 ~~~l~s~~----~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d----g~i~iwd~~~ 181 (482)
..+++.|+ .++.|.+|.+. +++....... +...+..++|+|++++|++++.+ +.|.+|++..
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~--------~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~ 84 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA--------EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDK 84 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE--------ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEET
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc--------cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeC
Confidence 34555564 35689998764 4544322221 24667889999999999999875 7999998865
Q ss_pred --CeE--eEEeecccCCCeEEEEEccCCCEEEEEE-CCCeEEEEeCCCCceEEEe------ec--------cccceeEEE
Q psy8448 182 --GQC--LRKLEKAHSLGVTCIQFSRDNSQILTAS-FDTYVRIHGLKSGKMLKEF------RG--------HSSFVNDIT 242 (482)
Q Consensus 182 --~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~------~~--------~~~~i~~l~ 242 (482)
++. +... ..+......+++ ++++|++++ .++.|.+|++.....+..+ .+ +...+.+++
T Consensus 85 ~~g~~~~~~~~-~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 161 (361)
T 3scy_A 85 EKGTLHLLNTQ-KTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVR 161 (361)
T ss_dssp TTTEEEEEEEE-ECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEE
T ss_pred CCCcEEEeeEe-ccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEE
Confidence 433 2222 224456777787 788877776 5789999999754332211 11 122357899
Q ss_pred EcCCCCEEEEEe-CCCcEEEEECCCCce------e------eeeeccCCCccceeEEEEcCCCCCEEEEEe-CCCeEEEE
Q psy8448 243 FTADGHSVLSAS-SDGTVKMWNLKTTEC------T------STFKSLGASDIAVNSIHLLPKNTEHFVVCN-KTNTVVIM 308 (482)
Q Consensus 243 ~~~~~~~l~~~~-~dg~i~i~d~~~~~~------~------~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-~d~~i~i~ 308 (482)
|+|+++++++++ .++.|.+|++..... + ..... ........++|+|++ +++++++ .++.|.+|
T Consensus 162 ~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~ 238 (361)
T 3scy_A 162 ITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV--APGSGPRHLIFNSDG-KFAYLINEIGGTVIAF 238 (361)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC--CTTCCEEEEEECTTS-SEEEEEETTTCEEEEE
T ss_pred ECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec--CCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEE
Confidence 999999776665 478999999875431 1 11111 334557899999999 5555555 78999999
Q ss_pred EcC-CcE--EEEecCCcccCcCEEEEEEcCCCCEEEEEeCC--cEEEEEee
Q psy8448 309 NMQ-GQI--VRSLSSGKREGGDFLCCTTSPRGEWIYCVGED--MVLVVRLI 354 (482)
Q Consensus 309 d~~-~~~--~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~d--g~i~iw~~ 354 (482)
++. +.. +..+.....+......++|+|||++|++++.+ +.|.+|++
T Consensus 239 ~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~ 289 (361)
T 3scy_A 239 RYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKV 289 (361)
T ss_dssp EEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEE
T ss_pred EecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEE
Confidence 994 432 23333322223456899999999999777665 88996544
No 160
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.86 E-value=1.6e-19 Score=167.63 Aligned_cols=233 Identities=10% Similarity=0.100 Sum_probs=152.0
Q ss_pred EEEEEeCC--CeEEEEec--CCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcC-CCeEeEEe
Q psy8448 114 YLITGSVD--GFIEVWNF--TTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIA-TGQCLRKL 188 (482)
Q Consensus 114 ~l~s~~~d--g~v~iwd~--~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~ 188 (482)
+|+.|+.. +.|.+|++ .+++......... .....+..++|+|++++|++++.+ .|.+|++. +++.....
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~-----~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~ 77 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEI-----PQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEA 77 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEEC-----CTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEE
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEcc-----CCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEee
Confidence 35556543 46877765 4454322111100 012357889999999999999888 99999997 77665433
Q ss_pred ecccCCCeEEEEEccCCCE--EEEEE-------------CCCeEEEEeCC-CCceEEEee----ccccceeEEEEcCCCC
Q psy8448 189 EKAHSLGVTCIQFSRDNSQ--ILTAS-------------FDTYVRIHGLK-SGKMLKEFR----GHSSFVNDITFTADGH 248 (482)
Q Consensus 189 ~~~~~~~v~~i~~~~~~~~--l~~~~-------------~dg~i~i~d~~-~~~~~~~~~----~~~~~i~~l~~~~~~~ 248 (482)
.........+++|+|+|++ ++++. .++.+.+|++. +++....+. .+...+.+++|+|+|+
T Consensus 78 ~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~ 157 (365)
T 1jof_A 78 SHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET 157 (365)
T ss_dssp EEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred EeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC
Confidence 2111123556899999985 44542 68999999997 466544433 2456789999999999
Q ss_pred EEEEEeC-CCcEEEEECC-CCceee--eeeccCCCccceeEEEEcCCCCCEEEEEe-CCCeEEEEEcC---CcEE---EE
Q psy8448 249 SVLSASS-DGTVKMWNLK-TTECTS--TFKSLGASDIAVNSIHLLPKNTEHFVVCN-KTNTVVIMNMQ---GQIV---RS 317 (482)
Q Consensus 249 ~l~~~~~-dg~i~i~d~~-~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-~d~~i~i~d~~---~~~~---~~ 317 (482)
+|++++. ++.|.+||+. +++... .+.. ..+...+..++|+|++ +++++++ .++.|.+|+++ ++.. ..
T Consensus 158 ~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~-~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~ 235 (365)
T 1jof_A 158 YLYSADLTANKLWTHRKLASGEVELVGSVDA-PDPGDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYTHHS 235 (365)
T ss_dssp EEEEEETTTTEEEEEEECTTSCEEEEEEEEC-SSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred EEEEEcCCCCEEEEEEECCCCCEEEeeeEec-CCCCCCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEccce
Confidence 8887764 6789999998 676432 2210 0124568899999999 5666555 57899999873 4432 12
Q ss_pred ecCCc----ccCc------CEEEEE-EcCCCCEEEEEeCCc------EEEEEee
Q psy8448 318 LSSGK----REGG------DFLCCT-TSPRGEWIYCVGEDM------VLVVRLI 354 (482)
Q Consensus 318 ~~~~~----~~~~------~v~~~~-~~~~g~~l~~~~~dg------~i~iw~~ 354 (482)
+.... .+.. .+..++ |+|||++|++++.+. .|.+|++
T Consensus 236 ~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~ 289 (365)
T 1jof_A 236 FPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKL 289 (365)
T ss_dssp EESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEE
T ss_pred EEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEE
Confidence 22111 1111 478899 999999998776432 8885543
No 161
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.86 E-value=7.8e-20 Score=169.74 Aligned_cols=245 Identities=10% Similarity=0.156 Sum_probs=169.5
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecC-CCceeeccccccccccccccccEEEEEEcCCCCE--EEEEe------
Q psy8448 99 SKSHVECARFSPDGQYLITGSVDGFIEVWNFT-TGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEM--LASGS------ 169 (482)
Q Consensus 99 h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~--l~~~~------ 169 (482)
+...+..++|+|+|++|++++.+ .|.+|++. +++......... .+.+..++|+|+|++ ++++.
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~-------~g~~~~~~~spdg~~l~~~~~~~~~~~~ 109 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPI-------GGHPRANDADTNTRAIFLLAAKQPPYAV 109 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEEC-------CSSGGGGCTTSCCEEEEEEECSSTTCCE
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeec-------CCCCccEEECCCCCEEEEEEecCCccee
Confidence 44568899999999999998877 99999997 776543222110 012445889999994 44543
Q ss_pred -------CCCcEEEEEcC-CCeEeEEeec---ccCCCeEEEEEccCCCEEEEEEC-CCeEEEEeCC-CCceE--EEee--
Q psy8448 170 -------QSGKVKIWKIA-TGQCLRKLEK---AHSLGVTCIQFSRDNSQILTASF-DTYVRIHGLK-SGKML--KEFR-- 232 (482)
Q Consensus 170 -------~dg~i~iwd~~-~~~~~~~~~~---~~~~~v~~i~~~~~~~~l~~~~~-dg~i~i~d~~-~~~~~--~~~~-- 232 (482)
.+|.+.+|++. +++....+.. .+...+.+++|+|+|++++++.. ++.|++||+. +++.. ..+.
T Consensus 110 ~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~ 189 (365)
T 1jof_A 110 YANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP 189 (365)
T ss_dssp EEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS
T ss_pred ccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecC
Confidence 68999999997 4554433321 24567999999999998887764 6799999998 67643 2333
Q ss_pred ccccceeEEEEcCCCCEEEEEeC-CCcEEEEECC--CCceee---eeeccCC----Ccc------ceeEEE-EcCCCCCE
Q psy8448 233 GHSSFVNDITFTADGHSVLSASS-DGTVKMWNLK--TTECTS---TFKSLGA----SDI------AVNSIH-LLPKNTEH 295 (482)
Q Consensus 233 ~~~~~i~~l~~~~~~~~l~~~~~-dg~i~i~d~~--~~~~~~---~~~~~~~----~~~------~v~~i~-~~~~~~~~ 295 (482)
.+...+..++|+|+|+++++++. ++.|.+|+++ +++... .+..... +.. .+..++ |+|+| ++
T Consensus 190 ~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG-~~ 268 (365)
T 1jof_A 190 DPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KY 268 (365)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SE
T ss_pred CCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCC-CE
Confidence 23567899999999999988775 6889999875 455421 2222211 121 578999 99999 56
Q ss_pred EEEEeC-CC-----eEEEEEcC--CcEEEE---ecCCcccCcCEEEEEEcC---CCCEEEEEeCC-cEEEEEeeh
Q psy8448 296 FVVCNK-TN-----TVVIMNMQ--GQIVRS---LSSGKREGGDFLCCTTSP---RGEWIYCVGED-MVLVVRLIQ 355 (482)
Q Consensus 296 l~~~~~-d~-----~i~i~d~~--~~~~~~---~~~~~~~~~~v~~~~~~~---~g~~l~~~~~d-g~i~iw~~~ 355 (482)
+++++. ++ .|.+|++. ++.... .... ......++|+| ||++|++++.+ +.|.+|+++
T Consensus 269 l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~---~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~ 340 (365)
T 1jof_A 269 MFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP---TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp EEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS---SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred EEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecC---CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEc
Confidence 655543 33 89999983 443321 2211 23345689999 89999998875 899987765
No 162
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.86 E-value=3.8e-20 Score=170.85 Aligned_cols=161 Identities=10% Similarity=0.108 Sum_probs=121.1
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEE-EECCCeEEEEeCCCCceEEEeec
Q psy8448 155 SLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILT-ASFDTYVRIHGLKSGKMLKEFRG 233 (482)
Q Consensus 155 ~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~ 233 (482)
.+++++++.++++++.++.|.+||+.+++.+..+..+....+..++|+|+++++++ +..++.|.+||+.+++.+..+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 45678888899999999999999999999888774333235789999999987654 45688999999999988777663
Q ss_pred c------ccceeEEEEcCCCCEEEEEeCC------------CcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCE
Q psy8448 234 H------SSFVNDITFTADGHSVLSASSD------------GTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEH 295 (482)
Q Consensus 234 ~------~~~i~~l~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 295 (482)
. ...+.+++|+|++++|++++.+ +.|.+||+.+++....+... .+...+.+++|+|++ .
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg-~- 160 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAADDG-S- 160 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCEEECTTS-C-
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec-cCCCcccceeECCCC-c-
Confidence 2 2337899999999999988865 89999999885543322211 223358889999999 5
Q ss_pred EEEEeCCCeEEEEEc-CCcEEEEecC
Q psy8448 296 FVVCNKTNTVVIMNM-QGQIVRSLSS 320 (482)
Q Consensus 296 l~~~~~d~~i~i~d~-~~~~~~~~~~ 320 (482)
+++++ +.|.+||. +++....+..
T Consensus 161 l~~~~--~~i~~~d~~~~~~~~~~~~ 184 (349)
T 1jmx_B 161 LYVAG--PDIYKMDVKTGKYTVALPL 184 (349)
T ss_dssp EEEES--SSEEEECTTTCCEEEEECS
T ss_pred EEEcc--CcEEEEeCCCCceeccccc
Confidence 44443 34999999 5666665543
No 163
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.85 E-value=2.4e-20 Score=184.55 Aligned_cols=187 Identities=14% Similarity=0.119 Sum_probs=132.6
Q ss_pred cccEEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEEC---CCeEEEEeCCC-
Q psy8448 150 EEAVMSLAYSRDSEMLASGSQ-SGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF---DTYVRIHGLKS- 224 (482)
Q Consensus 150 ~~~i~~l~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~---dg~i~i~d~~~- 224 (482)
..+|.+++|+|||++|++++. ||++.||++.+++. ..+...+...+..++|+|+ +.+++++. +....+|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 468999999999999999886 99999999966654 4442333367999999999 77777765 44455554432
Q ss_pred --CceEEEeeccccceeEEEEcCCCCE-EEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeC
Q psy8448 225 --GKMLKEFRGHSSFVNDITFTADGHS-VLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK 301 (482)
Q Consensus 225 --~~~~~~~~~~~~~i~~l~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~ 301 (482)
+... .+... ..+...+|+|+++. +++.+.++.+.+||+.+++...... . .. .+++|+|+| +.+++++.
T Consensus 99 ~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~---~-~~--~~~~~spDG-~~la~~~~ 169 (582)
T 3o4h_A 99 RPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR---L-PG--FGFVSDIRG-DLIAGLGF 169 (582)
T ss_dssp STTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE---E-SS--CEEEEEEET-TEEEEEEE
T ss_pred CCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec---C-CC--ceEEECCCC-CEEEEEEE
Confidence 2222 33322 23446688888753 3444445556699999887655443 2 22 789999999 77887766
Q ss_pred C----CeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCc--EEE
Q psy8448 302 T----NTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDM--VLV 350 (482)
Q Consensus 302 d----~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg--~i~ 350 (482)
+ +.|++||+.+.....+..+ ...+..++|+|||++|+++..++ .|+
T Consensus 170 ~~~~~~~i~~~d~~~g~~~~l~~~---~~~~~~~~~SpDG~~l~~~~~~~~~~i~ 221 (582)
T 3o4h_A 170 FGGGRVSLFTSNLSSGGLRVFDSG---EGSFSSASISPGMKVTAGLETAREARLV 221 (582)
T ss_dssp EETTEEEEEEEETTTCCCEEECCS---SCEEEEEEECTTSCEEEEEECSSCEEEE
T ss_pred cCCCCeEEEEEcCCCCCceEeecC---CCccccceECCCCCEEEEccCCCeeEEE
Confidence 6 7899999865445566544 56789999999999999888888 666
No 164
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.85 E-value=3.7e-18 Score=152.81 Aligned_cols=247 Identities=13% Similarity=0.187 Sum_probs=183.4
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEc-CCCCEEEEEeC-CCcEE
Q psy8448 98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYS-RDSEMLASGSQ-SGKVK 175 (482)
Q Consensus 98 ~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~-~~~~~l~~~~~-dg~i~ 175 (482)
+|-..+.+++++++++++++...++.|.+||.. ++....+.... ...++...+..+++. ++++++++... ++.|.
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~--~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECG--KRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ 103 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBS--SSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccC--CCcccccCceEEEEEcCCCeEEEEcCCCCCEEE
Confidence 556789999999999988888889999999977 55444332211 111234578999994 67766666543 78999
Q ss_pred EEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEee--ccccceeEEEEcCCCCEEEEE
Q psy8448 176 IWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFR--GHSSFVNDITFTADGHSVLSA 253 (482)
Q Consensus 176 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~~~ 253 (482)
+|| .+++.+..+...+...+..++++|++..+++...++.|.+||. .++.+..+. .+...+.+++++++++++++.
T Consensus 104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~ 181 (286)
T 1q7f_A 104 IYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISD 181 (286)
T ss_dssp EEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred EEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEEE
Confidence 999 5677776664445567899999999987777777899999996 456665554 344568999999999977777
Q ss_pred eCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCC-eEEEEEcCCcEEEEecCCcccCcCEEEEE
Q psy8448 254 SSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTN-TVVIMNMQGQIVRSLSSGKREGGDFLCCT 332 (482)
Q Consensus 254 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~v~~~~ 332 (482)
..++.|.+||.. ++.+..+... ++...+..+++++++ .++++...++ .|.+|+.+++.+..+..+.. ...+.+++
T Consensus 182 ~~~~~i~~~~~~-g~~~~~~~~~-g~~~~p~~i~~d~~G-~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~-~~~~~~i~ 257 (286)
T 1q7f_A 182 NRAHCVKVFNYE-GQYLRQIGGE-GITNYPIGVGINSNG-EILIADNHNNFNLTIFTQDGQLISALESKVK-HAQCFDVA 257 (286)
T ss_dssp GGGTEEEEEETT-CCEEEEESCT-TTSCSEEEEEECTTC-CEEEEECSSSCEEEEECTTSCEEEEEEESSC-CSCEEEEE
T ss_pred CCCCEEEEEcCC-CCEEEEEccC-CccCCCcEEEECCCC-CEEEEeCCCCEEEEEECCCCCEEEEEcccCC-CCcceeEE
Confidence 778999999974 4555555311 223567899999998 7888877776 99999998888777765321 33478999
Q ss_pred EcCCCCEEEEEeCCcEEEEEee
Q psy8448 333 TSPRGEWIYCVGEDMVLVVRLI 354 (482)
Q Consensus 333 ~~~~g~~l~~~~~dg~i~iw~~ 354 (482)
++|+|+++++ +.|+.|++|++
T Consensus 258 ~~~~g~l~vs-~~~~~v~v~~~ 278 (286)
T 1q7f_A 258 LMDDGSVVLA-SKDYRLYIYRY 278 (286)
T ss_dssp EETTTEEEEE-ETTTEEEEEEC
T ss_pred ECCCCcEEEE-CCCCeEEEEEc
Confidence 9999986666 67999997764
No 165
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.84 E-value=4e-18 Score=155.67 Aligned_cols=245 Identities=13% Similarity=0.116 Sum_probs=183.4
Q ss_pred CCcEEEEEEcCCCCEEEEEeCC------------------------CeEEEEecCCCceeeccccccccccccccccEEE
Q psy8448 100 KSHVECARFSPDGQYLITGSVD------------------------GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMS 155 (482)
Q Consensus 100 ~~~v~~~~~s~~~~~l~s~~~d------------------------g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~ 155 (482)
-+.+.+++++|+|+++++...+ +.|.+||..+++........ +-..+..
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-------~~~~p~g 95 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKN-------LFYLPHG 95 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTT-------TCSSEEE
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCC-------ccCCceE
Confidence 4679999999999999888777 47999999888876443211 2356889
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCe-EeEEee--------cccCCCeEEEEEcc-CCCEEEEEE-CCCeEEEEeCCC
Q psy8448 156 LAYSRDSEMLASGSQSGKVKIWKIATGQ-CLRKLE--------KAHSLGVTCIQFSR-DNSQILTAS-FDTYVRIHGLKS 224 (482)
Q Consensus 156 l~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~--------~~~~~~v~~i~~~~-~~~~l~~~~-~dg~i~i~d~~~ 224 (482)
++++|+++++++...++.|++||..... .+..+. ..+......++++| ++..+++.+ .++.|++|| .+
T Consensus 96 ia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~ 174 (329)
T 3fvz_A 96 LSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PS 174 (329)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TT
T ss_pred EEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CC
Confidence 9999999988888888999999975442 444442 12334688999999 777777775 689999999 56
Q ss_pred CceEEEeecc----------ccceeEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCC
Q psy8448 225 GKMLKEFRGH----------SSFVNDITFTAD-GHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNT 293 (482)
Q Consensus 225 ~~~~~~~~~~----------~~~i~~l~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 293 (482)
++.+..+... -..+..++++|+ +.++++...++.|++||..+++.+..+... .+...+..++++| +
T Consensus 175 g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~-~~~~~~~~~~~~p-g- 251 (329)
T 3fvz_A 175 GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA-SFGRNVFAISYIP-G- 251 (329)
T ss_dssp SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT-TTTTCEEEEEEET-T-
T ss_pred CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc-ccCCCcceeeecC-C-
Confidence 7777666422 234889999998 676777778899999999988888777422 3456678899999 3
Q ss_pred CEEEEE-------eCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448 294 EHFVVC-------NKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ 355 (482)
Q Consensus 294 ~~l~~~-------~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~ 355 (482)
..+.+. ..+..|++|+. +++.+..+.....+...+..++++|+|..+++...++.|++|++.
T Consensus 252 ~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 252 FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 333333 33458999997 688887775333335678999999999888888889999966553
No 166
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.83 E-value=1.3e-18 Score=176.81 Aligned_cols=263 Identities=9% Similarity=0.100 Sum_probs=171.4
Q ss_pred CCCCceeeccCCccccccccccccccccceeeecCCCC-----cEEEEEEcCCCCEEEEEeCC---------CeEEEEec
Q psy8448 64 LPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKS-----HVECARFSPDGQYLITGSVD---------GFIEVWNF 129 (482)
Q Consensus 64 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~s~~~~~l~s~~~d---------g~v~iwd~ 129 (482)
.|+|..+...++.+.+|+...... ..++.+|.. ....++|||||++|+.++.+ +.+.+||+
T Consensus 25 ~~dg~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~ 99 (740)
T 4a5s_A 25 ISDHEYLYKQENNILVFNAEYGNS-----SVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL 99 (740)
T ss_dssp CSSSEEEEEETTEEEEEETTTCCE-----EEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred CCCCcEEEEcCCcEEEEECCCCce-----EEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEEC
Confidence 455555555466777777654432 233334543 23458899999999998865 56779999
Q ss_pred CCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCe-------------
Q psy8448 130 TTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGV------------- 196 (482)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v------------- 196 (482)
.+++... +. .|...+...+|||||+.||.+. ++.|++|++.+++..+....++...+
T Consensus 100 ~~~~~~~-l~--------~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~ 169 (740)
T 4a5s_A 100 NKRQLIT-EE--------RIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEV 169 (740)
T ss_dssp TTTEECC-SS--------CCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHT
T ss_pred CCCcEEE-cc--------cCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchh
Confidence 9987543 21 2346799999999999999985 68999999988775543322332222
Q ss_pred ----EEEEEccCCCEEEEEECCC------------------------------------eEEEEeCCC---Cc--eEEEe
Q psy8448 197 ----TCIQFSRDNSQILTASFDT------------------------------------YVRIHGLKS---GK--MLKEF 231 (482)
Q Consensus 197 ----~~i~~~~~~~~l~~~~~dg------------------------------------~i~i~d~~~---~~--~~~~~ 231 (482)
..+.|+|||++|+.++.|. .|++||+.+ ++ ....+
T Consensus 170 ~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l 249 (740)
T 4a5s_A 170 FSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQI 249 (740)
T ss_dssp SSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEE
T ss_pred cCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEe
Confidence 3589999999999875321 588899988 73 22333
Q ss_pred e------ccccceeEEEEcCCCCEEEEEeC----CCcEEEEECCCCc----eeeeeec-cCCCcccee-----EEEEcCC
Q psy8448 232 R------GHSSFVNDITFTADGHSVLSASS----DGTVKMWNLKTTE----CTSTFKS-LGASDIAVN-----SIHLLPK 291 (482)
Q Consensus 232 ~------~~~~~i~~l~~~~~~~~l~~~~~----dg~i~i~d~~~~~----~~~~~~~-~~~~~~~v~-----~i~~~~~ 291 (482)
. ++...+..++|+|||+.++.... +..|.+||+.+++ +...... ...+...+. .+.|+|+
T Consensus 250 ~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspD 329 (740)
T 4a5s_A 250 TAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLD 329 (740)
T ss_dssp CCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTT
T ss_pred cCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCC
Confidence 3 37778999999999997665533 3369999999887 3222110 013343333 7889999
Q ss_pred CCCEEEEEe-CC--CeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeC
Q psy8448 292 NTEHFVVCN-KT--NTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGE 345 (482)
Q Consensus 292 ~~~~l~~~~-~d--~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~ 345 (482)
|..+++..+ .+ ..|++||..+.....+..+ ...+..+.. +|++.|+..+.
T Consensus 330 G~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g---~~~v~~~~~-~d~~~i~f~~~ 382 (740)
T 4a5s_A 330 GNSFYKIISNEEGYRHICYFQIDKKDCTFITKG---TWEVIGIEA-LTSDYLYYISN 382 (740)
T ss_dssp SSEEEEEEECTTSCEEEEEEETTCSSCEESCCS---SSCEEEEEE-ECSSEEEEEES
T ss_pred CCEEEEEEEcCCCceEEEEEECCCCceEecccC---CEEEEEEEE-EeCCEEEEEEe
Confidence 944442554 44 4688888877666666654 445555432 34666665443
No 167
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.83 E-value=8e-20 Score=171.82 Aligned_cols=226 Identities=10% Similarity=-0.029 Sum_probs=150.3
Q ss_pred cEEEEEEcCCCCEEEEEeCC---CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy8448 102 HVECARFSPDGQYLITGSVD---GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWK 178 (482)
Q Consensus 102 ~v~~~~~s~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd 178 (482)
.+.+++|+|||++|+..... ..|.+||+.+++........ ......+.|+|+|++|+.++.++.|.+||
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~--------~~~~~~~~~spdg~~l~~~~~~~~l~~~d 108 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGK--------GDNTFGGFISTDERAFFYVKNELNLMKVD 108 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSS--------CBCTTTCEECTTSSEEEEEETTTEEEEEE
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCC--------CCccccceECCCCCEEEEEEcCCcEEEEE
Confidence 36778999999998877543 47889999887754332211 11223378999999999999999999999
Q ss_pred cCCCeEeEEeecccCCCeEE-------------------EEEccCCCEEEEE-----ECCCeEEEEeCCCCceEEEeecc
Q psy8448 179 IATGQCLRKLEKAHSLGVTC-------------------IQFSRDNSQILTA-----SFDTYVRIHGLKSGKMLKEFRGH 234 (482)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~~-------------------i~~~~~~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~~ 234 (482)
+.+++..... ..+...... +.|+|+++.++.+ ..+..|++||+.+++..... .+
T Consensus 109 ~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~ 186 (396)
T 3c5m_A 109 LETLEEQVIY-TVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QD 186 (396)
T ss_dssp TTTCCEEEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EE
T ss_pred CCCCCcEEEE-ecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cC
Confidence 9888765544 222222222 3456777666544 35678999999988765544 46
Q ss_pred ccceeEEEEcC-CCCEEEEEeCC------CcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC----C
Q psy8448 235 SSFVNDITFTA-DGHSVLSASSD------GTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT----N 303 (482)
Q Consensus 235 ~~~i~~l~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d----~ 303 (482)
...+..+.|+| +++.|+..+.+ ..|.+||+..++...... ......+..+.|+|++..+++++..+ +
T Consensus 187 ~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 264 (396)
T 3c5m_A 187 TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE--HAEGESCTHEFWIPDGSAMAYVSYFKGQTDR 264 (396)
T ss_dssp SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC--CCTTEEEEEEEECTTSSCEEEEEEETTTCCE
T ss_pred CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec--cCCCccccceEECCCCCEEEEEecCCCCccc
Confidence 67789999999 78877776643 368889987665333221 01134678899999994444443332 4
Q ss_pred eEEEEEcCCcEEEEecCCcccCcCEEEEEEcC-CCCEEEEEe
Q psy8448 304 TVVIMNMQGQIVRSLSSGKREGGDFLCCTTSP-RGEWIYCVG 344 (482)
Q Consensus 304 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~-~g~~l~~~~ 344 (482)
.|++||+.......+.... ... +.|+| ||+++++++
T Consensus 265 ~l~~~d~~~g~~~~l~~~~----~~~-~~~s~~dg~~l~~~~ 301 (396)
T 3c5m_A 265 VIYKANPETLENEEVMVMP----PCS-HLMSNFDGSLMVGDG 301 (396)
T ss_dssp EEEEECTTTCCEEEEEECC----SEE-EEEECSSSSEEEEEE
T ss_pred eEEEEECCCCCeEEeeeCC----CCC-CCccCCCCceEEEec
Confidence 4999999533333332211 123 89999 999888765
No 168
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.83 E-value=9.1e-19 Score=164.17 Aligned_cols=279 Identities=12% Similarity=0.047 Sum_probs=180.2
Q ss_pred cCCCCCCceeeccCCc---cccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeec
Q psy8448 61 QGLLPPGTTIDLFRGK---AAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKD 137 (482)
Q Consensus 61 ~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 137 (482)
..+.|+|..+++.... ..+|.... ......++..+|...+..+.|+|||+.|+.++.++.|++||+.+++....
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~---~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~ 117 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDL---NTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVV 117 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEET---TTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeC---CCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceee
Confidence 4566777766665442 12333221 12223344456666666788999999999999999999999999876554
Q ss_pred cccccccccccccccEEEE--EEcCCCCEEEEEe----------------------CCCcEEEEEcCCCeEeEEeecccC
Q psy8448 138 LKYQAQDNFMLMEEAVMSL--AYSRDSEMLASGS----------------------QSGKVKIWKIATGQCLRKLEKAHS 193 (482)
Q Consensus 138 ~~~~~~~~~~~h~~~i~~l--~~~~~~~~l~~~~----------------------~dg~i~iwd~~~~~~~~~~~~~~~ 193 (482)
...+ ...+... .++|++++++... .+..|.+||+.+++..... .+.
T Consensus 118 ~~~~--------~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~--~~~ 187 (388)
T 3pe7_A 118 YQVP--------AEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL--QEN 187 (388)
T ss_dssp EECC--------TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE--EES
T ss_pred eech--------hhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEee--cCC
Confidence 4332 2233333 3489999887432 3468999999988755443 456
Q ss_pred CCeEEEEEcc-CCCEEEEEECC------CeEEEEeCCCCceEEEeeccc--cceeEEEEcCCCCEEEEEeC-CC----cE
Q psy8448 194 LGVTCIQFSR-DNSQILTASFD------TYVRIHGLKSGKMLKEFRGHS--SFVNDITFTADGHSVLSASS-DG----TV 259 (482)
Q Consensus 194 ~~v~~i~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~--~~i~~l~~~~~~~~l~~~~~-dg----~i 259 (482)
..+..++|+| +|+.|+.+..+ ..|.++|+..++. ..+..+. ..+..+.|+|||+.|+..+. ++ .|
T Consensus 188 ~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 266 (388)
T 3pe7_A 188 QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFI 266 (388)
T ss_dssp SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEE
T ss_pred ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceE
Confidence 6789999999 99999887753 3788888866554 3343333 35788999999997765443 22 39
Q ss_pred EEEECCCCceeeeeeccCCCcc---ceeEEEEcCCCCCEEEEE--------eCCCeEEEEEcCCcEEEEecCCccc----
Q psy8448 260 KMWNLKTTECTSTFKSLGASDI---AVNSIHLLPKNTEHFVVC--------NKTNTVVIMNMQGQIVRSLSSGKRE---- 324 (482)
Q Consensus 260 ~i~d~~~~~~~~~~~~~~~~~~---~v~~i~~~~~~~~~l~~~--------~~d~~i~i~d~~~~~~~~~~~~~~~---- 324 (482)
.+||+.+++...... ...+.. ....+.|+|+|..++++. ..+..|++||+.+..+..+..+...
T Consensus 267 ~~~d~~~g~~~~l~~-~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~ 345 (388)
T 3pe7_A 267 YSADPETLENRQLTS-MPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVF 345 (388)
T ss_dssp EEECTTTCCEEEEEE-ECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCB
T ss_pred EEEecCCCceEEEEc-CCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCccccc
Confidence 999999987533222 111100 012237899995444443 4567899999976666666544210
Q ss_pred ----CcCEEEEEEcCCCCEEEEEe-CCcEEEEEee
Q psy8448 325 ----GGDFLCCTTSPRGEWIYCVG-EDMVLVVRLI 354 (482)
Q Consensus 325 ----~~~v~~~~~~~~g~~l~~~~-~dg~i~iw~~ 354 (482)
...+.+++|+|||+.|+..+ .+|...+|.+
T Consensus 346 ~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 346 EGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp TTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 01467889999999888665 4677776643
No 169
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.83 E-value=1.7e-18 Score=175.86 Aligned_cols=240 Identities=11% Similarity=0.086 Sum_probs=163.7
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC---------C
Q psy8448 102 HVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS---------G 172 (482)
Q Consensus 102 ~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d---------g 172 (482)
...+++|+|||++++++ ||.|++||+.+++....+..+... .+......++|||||++|+.++.+ +
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFD---EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTT---TCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhh---hhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 45578999999999886 899999999999876554433211 112233458999999999998876 5
Q ss_pred cEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEe-eccccce-------------
Q psy8448 173 KVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEF-RGHSSFV------------- 238 (482)
Q Consensus 173 ~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i------------- 238 (482)
.+.+||+.+++... + ..+...+..++|+|||+.|+.+. ++.|++||+.+++..+.. .++...+
T Consensus 93 ~~~~~d~~~~~~~~-l-~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~ 169 (740)
T 4a5s_A 93 SYDIYDLNKRQLIT-E-ERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEV 169 (740)
T ss_dssp EEEEEETTTTEECC-S-SCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHT
T ss_pred EEEEEECCCCcEEE-c-ccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchh
Confidence 67799999987654 3 45677899999999999999886 789999999888754422 2222222
Q ss_pred ----eEEEEcCCCCEEEEEeCCC------------------------------------cEEEEECCC---Cce--eeee
Q psy8448 239 ----NDITFTADGHSVLSASSDG------------------------------------TVKMWNLKT---TEC--TSTF 273 (482)
Q Consensus 239 ----~~l~~~~~~~~l~~~~~dg------------------------------------~i~i~d~~~---~~~--~~~~ 273 (482)
..+.|+|||+.|+.++.|. .|.+||+.+ ++. ...+
T Consensus 170 ~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l 249 (740)
T 4a5s_A 170 FSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQI 249 (740)
T ss_dssp SSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEE
T ss_pred cCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEe
Confidence 3589999999999875321 478899988 632 2222
Q ss_pred ecc---CCCccceeEEEEcCCCCCEEEEEeC----CCeEEEEEc-CCc----E--EEEe-cCCcccCcC-----EEEEEE
Q psy8448 274 KSL---GASDIAVNSIHLLPKNTEHFVVCNK----TNTVVIMNM-QGQ----I--VRSL-SSGKREGGD-----FLCCTT 333 (482)
Q Consensus 274 ~~~---~~~~~~v~~i~~~~~~~~~l~~~~~----d~~i~i~d~-~~~----~--~~~~-~~~~~~~~~-----v~~~~~ 333 (482)
... ..+...+..++|+|++ +.++.... +..|.+||. .++ . +..+ ... +... ....+|
T Consensus 250 ~~~~~~~~~~~~~~~~~wspdg-~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~--~~~~v~~~~~~~p~f 326 (740)
T 4a5s_A 250 TAPASMLIGDHYLCDVTWATQE-RISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMS--TTGWVGRFRPSEPHF 326 (740)
T ss_dssp CCCHHHHTSCEEEEEEEEEETT-EEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEEC--SSSCSSSSSCCCCEE
T ss_pred cCCccCCCCCeEEEEEEEeCCC-eEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeecc--CCceEccCcCCCceE
Confidence 210 0267789999999998 55554332 237999998 444 1 1111 011 1222 236789
Q ss_pred cCCCCEEE-EEe-CCcEEEEE
Q psy8448 334 SPRGEWIY-CVG-EDMVLVVR 352 (482)
Q Consensus 334 ~~~g~~l~-~~~-~dg~i~iw 352 (482)
+|||+.|+ ..+ .+|.-.||
T Consensus 327 spDG~~l~~~~s~~~G~~~l~ 347 (740)
T 4a5s_A 327 TLDGNSFYKIISNEEGYRHIC 347 (740)
T ss_dssp CTTSSEEEEEEECTTSCEEEE
T ss_pred cCCCCEEEEEEEcCCCceEEE
Confidence 99999877 555 45554444
No 170
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.83 E-value=1e-18 Score=175.72 Aligned_cols=244 Identities=11% Similarity=0.095 Sum_probs=170.2
Q ss_pred ecCCCCcEEEEEEcCCCCEEEEE--eCCCeEEEEecCCCceeeccccccccccccccccEE---------EEEEc--CCC
Q psy8448 96 KFGSKSHVECARFSPDGQYLITG--SVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVM---------SLAYS--RDS 162 (482)
Q Consensus 96 ~~~h~~~v~~~~~s~~~~~l~s~--~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~---------~l~~~--~~~ 162 (482)
+.+|...|..++|++++-+++.. +.++...||....+.....+... ...+. ...|+ |||
T Consensus 19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~--------~~~~~~~~~~~~~~~~~~~~SPDg 90 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPA--------PWNVRNRVFEYSGFPWAGVPRPAG 90 (662)
T ss_dssp HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCT--------TCCBCCCGGGTCCCCEEEECCSSS
T ss_pred HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCC--------CccccccccccCCccceeeeecCC
Confidence 44789999999999887777777 56889999986444333333222 22233 45555 999
Q ss_pred CE-EEEEeC-CCcEEEEEcC--CCeEeEEeecc----cCCCeEEEEEccCCCEEEEEECC----------CeEEEEeCCC
Q psy8448 163 EM-LASGSQ-SGKVKIWKIA--TGQCLRKLEKA----HSLGVTCIQFSRDNSQILTASFD----------TYVRIHGLKS 224 (482)
Q Consensus 163 ~~-l~~~~~-dg~i~iwd~~--~~~~~~~~~~~----~~~~v~~i~~~~~~~~l~~~~~d----------g~i~i~d~~~ 224 (482)
+. |+.++. +..|.++++. .......+... +...+..++|+|||+.|++++.+ ..|++||+.+
T Consensus 91 ~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 170 (662)
T 3azo_A 91 GPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDG 170 (662)
T ss_dssp SCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred CeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCC
Confidence 98 777654 5667777765 20334444221 56678899999999999988876 5899999987
Q ss_pred ------CceEEEee-ccccceeEEEEcCCCCEEEEEeCC--------CcEEEEECC-CC---ceeeeeeccCCCccceeE
Q psy8448 225 ------GKMLKEFR-GHSSFVNDITFTADGHSVLSASSD--------GTVKMWNLK-TT---ECTSTFKSLGASDIAVNS 285 (482)
Q Consensus 225 ------~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d--------g~i~i~d~~-~~---~~~~~~~~~~~~~~~v~~ 285 (482)
++. ..+. .+...+..++|+|||++|+.++.+ ..|.+||+. ++ +...... .+...+..
T Consensus 171 ~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~---~~~~~~~~ 246 (662)
T 3azo_A 171 SAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG---GPEEAIAQ 246 (662)
T ss_dssp TTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE---ETTBCEEE
T ss_pred CccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC---CCCceEcc
Confidence 554 4454 556778889999999999887754 379999998 56 3332222 44678899
Q ss_pred EEEcCCCCCEEEEEeCCC--eEEEEEcCCcEEEEecCCcccC------cCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448 286 IHLLPKNTEHFVVCNKTN--TVVIMNMQGQIVRSLSSGKREG------GDFLCCTTSPRGEWIYCVGEDMVLVVRL 353 (482)
Q Consensus 286 i~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~------~~v~~~~~~~~g~~l~~~~~dg~i~iw~ 353 (482)
+.|+|+| ++++++..++ .|.+||..+.....+..+.... ..+..++|+|+++++++++. +.++||.
T Consensus 247 ~~~spdg-~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 320 (662)
T 3azo_A 247 AEWAPDG-SLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGI 320 (662)
T ss_dssp EEECTTS-CEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEE
T ss_pred eEECCCC-eEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEE
Confidence 9999999 4888888888 5666666444444444332111 01457899999999999998 9999773
No 171
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.81 E-value=1.5e-17 Score=167.35 Aligned_cols=234 Identities=12% Similarity=0.047 Sum_probs=159.4
Q ss_pred EEEEc--CCCCE-EEEEeC-CCeEEEEecC--C-CceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC------
Q psy8448 105 CARFS--PDGQY-LITGSV-DGFIEVWNFT--T-GKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS------ 171 (482)
Q Consensus 105 ~~~~s--~~~~~-l~s~~~-dg~v~iwd~~--~-~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d------ 171 (482)
...|+ |||+. |+.++. +..|.++++. . ++. ..+.... ...|...+..++|+|||+.|++++.+
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~-~~l~~~~---~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~ 156 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVP-RPLTPVS---AVGGGLRWADPVLLPERGEVWCMAEEFTGEGP 156 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCC-EECSCCC---CSTTCEEEEEEEEETTTTEEEEEEEEECSSST
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCC-EeccCCc---cCCCCccccCcEECCCCCEEEEEEecccCCCC
Confidence 56565 99998 776653 5667777765 2 332 2222110 00134678899999999999998876
Q ss_pred ----CcEEEEEcCC------CeEeEEeec-ccCCCeEEEEEccCCCEEEEEECC--------CeEEEEeCC-CC---ceE
Q psy8448 172 ----GKVKIWKIAT------GQCLRKLEK-AHSLGVTCIQFSRDNSQILTASFD--------TYVRIHGLK-SG---KML 228 (482)
Q Consensus 172 ----g~i~iwd~~~------~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~d--------g~i~i~d~~-~~---~~~ 228 (482)
..|++||+.+ ++ ...+ . .+...+..++|+|||++|+.++.+ ..|++||+. ++ +..
T Consensus 157 ~~~~~~i~~~~~~~~~~~~~~~-~~~l-~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~ 234 (662)
T 3azo_A 157 SDVRRFLAAVPLDGSAAADRSA-VREL-SDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTR 234 (662)
T ss_dssp TCEEEEEEEEETTSTTTTCGGG-SEES-SCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEE
T ss_pred CCceeEEEEEECCCCccccCCc-eeEE-EecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccE
Confidence 5899999987 44 3444 3 445677889999999999987754 379999998 56 444
Q ss_pred EEeeccccceeEEEEcCCCCEEEEEeCCC--cEEEEECCCCceeeeeeccCCCccc--------eeEEEEcCCCCCEEEE
Q psy8448 229 KEFRGHSSFVNDITFTADGHSVLSASSDG--TVKMWNLKTTECTSTFKSLGASDIA--------VNSIHLLPKNTEHFVV 298 (482)
Q Consensus 229 ~~~~~~~~~i~~l~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~--------v~~i~~~~~~~~~l~~ 298 (482)
....++...+..+.|+|||+++++++.++ .|.+||+.+++...... .+... +..++|+|++ .++++
T Consensus 235 ~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~---~~~~~~~p~w~~~~~~~~~~~~~-~~~~~ 310 (662)
T 3azo_A 235 TLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCR---REEEFAGPLWTPGMRWFAPLANG-LIAVV 310 (662)
T ss_dssp EEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSC---CSSBSSCCCCSTTCCSEEECTTS-CEEEE
T ss_pred EeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccc---ccccccCccccccCceEeEeCCC-EEEEE
Confidence 44445578899999999999777887788 56667766666543332 11111 4678888887 78888
Q ss_pred EeCCCeEEEE--EcCCcEEEEecCCcccCcCEEEE-EEcCCCCEEEEEeCCcEEEEE
Q psy8448 299 CNKTNTVVIM--NMQGQIVRSLSSGKREGGDFLCC-TTSPRGEWIYCVGEDMVLVVR 352 (482)
Q Consensus 299 ~~~d~~i~i~--d~~~~~~~~~~~~~~~~~~v~~~-~~~~~g~~l~~~~~dg~i~iw 352 (482)
++. +.+++| |..+..+..+..+ ...+..+ +++.+.-.+++++.+....+|
T Consensus 311 ~~~-~~~~l~~~d~~~~~~~~l~~~---~~~~~~~~s~~~~~~~~~~~~~~~~~~i~ 363 (662)
T 3azo_A 311 HGK-GAAVLGILDPESGELVDAAGP---WTEWAATLTVSGTRAVGVAASPRTAYEVV 363 (662)
T ss_dssp EBS-SSCEEEEEETTTTEEEECCSS---CCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred EEc-CccEEEEEECCCCcEEEecCC---CCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence 888 999998 5555667776554 4456666 554443344456667666766
No 172
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.80 E-value=1.7e-17 Score=151.46 Aligned_cols=183 Identities=11% Similarity=0.120 Sum_probs=140.8
Q ss_pred ccEEEEEEcCCCCEEEEEeCC------------------------CcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCC
Q psy8448 151 EAVMSLAYSRDSEMLASGSQS------------------------GKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNS 206 (482)
Q Consensus 151 ~~i~~l~~~~~~~~l~~~~~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 206 (482)
..+.+++++|+|+++++...+ +.|.+||..+++....+...+-.....++++|+|.
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~ 103 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN 103 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC
Confidence 579999999999988887766 47999999889887766444556789999999999
Q ss_pred EEEEEECCCeEEEEeCCCCc-eEEEe---------eccccceeEEEEcC-CCCEEEEEe-CCCcEEEEECCCCceeeeee
Q psy8448 207 QILTASFDTYVRIHGLKSGK-MLKEF---------RGHSSFVNDITFTA-DGHSVLSAS-SDGTVKMWNLKTTECTSTFK 274 (482)
Q Consensus 207 ~l~~~~~dg~i~i~d~~~~~-~~~~~---------~~~~~~i~~l~~~~-~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~ 274 (482)
++++...++.|++||..... .+..+ ..+...+..++++| ++.++++.+ .++.|++|| .+++.+..+.
T Consensus 104 l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~ 182 (329)
T 3fvz_A 104 YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWG 182 (329)
T ss_dssp EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEEC
T ss_pred EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEec
Confidence 88888888999999985442 44544 23444688999999 788777776 689999999 5566666653
Q ss_pred ccC-------CCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CcEEEEecCCcccCcCEEEEEEcC
Q psy8448 275 SLG-------ASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSGKREGGDFLCCTTSP 335 (482)
Q Consensus 275 ~~~-------~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~v~~~~~~~ 335 (482)
... .+-.....++++|++..++++...++.|++|+.. ++.+..+.... ....+..++++|
T Consensus 183 ~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~-~~~~~~~~~~~p 250 (329)
T 3fvz_A 183 EESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHAS-FGRNVFAISYIP 250 (329)
T ss_dssp EECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTT-TTTCEEEEEEET
T ss_pred cCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccc-cCCCcceeeecC
Confidence 211 1223478999999854788888889999999996 88888875432 245678999999
No 173
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.80 E-value=1.2e-16 Score=143.00 Aligned_cols=197 Identities=13% Similarity=0.195 Sum_probs=147.6
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeec-----ccCCCeEEEEEc-cCCCEEEEEEC-CCeEEEEeC
Q psy8448 150 EEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEK-----AHSLGVTCIQFS-RDNSQILTASF-DTYVRIHGL 222 (482)
Q Consensus 150 ~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~v~~i~~~-~~~~~l~~~~~-dg~i~i~d~ 222 (482)
-..+.+++++++++++++...++.|.+||.. ++....+.. .+...+..+++. +++..+++... ++.|.+||
T Consensus 29 ~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d- 106 (286)
T 1q7f_A 29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN- 106 (286)
T ss_dssp BSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-
T ss_pred cCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-
Confidence 4578999999999988888889999999976 655555521 233568899994 56655555433 78999999
Q ss_pred CCCceEEEeec-cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeC
Q psy8448 223 KSGKMLKEFRG-HSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK 301 (482)
Q Consensus 223 ~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~ 301 (482)
.+++.+..+.. +...+.+++++|+++++++...++.|.+||.. ++....+... .+...+..++++|++ .++++...
T Consensus 107 ~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~-~~~~~p~~i~~~~~g-~l~v~~~~ 183 (286)
T 1q7f_A 107 QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCS-KHLEFPNGVVVNDKQ-EIFISDNR 183 (286)
T ss_dssp TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECT-TTCSSEEEEEECSSS-EEEEEEGG
T ss_pred CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCC-CccCCcEEEEECCCC-CEEEEECC
Confidence 56777666642 34568999999999977777778999999964 5555554321 233467899999998 67777778
Q ss_pred CCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCc-EEEEE
Q psy8448 302 TNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDM-VLVVR 352 (482)
Q Consensus 302 d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg-~i~iw 352 (482)
++.|++||.+++.+..+... .....+..++++++|+++++...++ .|.+|
T Consensus 184 ~~~i~~~~~~g~~~~~~~~~-g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~ 234 (286)
T 1q7f_A 184 AHCVKVFNYEGQYLRQIGGE-GITNYPIGVGINSNGEILIADNHNNFNLTIF 234 (286)
T ss_dssp GTEEEEEETTCCEEEEESCT-TTSCSEEEEEECTTCCEEEEECSSSCEEEEE
T ss_pred CCEEEEEcCCCCEEEEEccC-CccCCCcEEEECCCCCEEEEeCCCCEEEEEE
Confidence 99999999988877777542 1135678999999999888888776 99944
No 174
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.80 E-value=6.5e-17 Score=149.05 Aligned_cols=217 Identities=12% Similarity=0.124 Sum_probs=150.2
Q ss_pred CcEEEEEEcCCCCEEEEEe---------CCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC
Q psy8448 101 SHVECARFSPDGQYLITGS---------VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS 171 (482)
Q Consensus 101 ~~v~~~~~s~~~~~l~s~~---------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d 171 (482)
..+..+++ ||+.++... .++.|.+||+.+++.... ..+..++|+|+|++|+.++.+
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-------------~~~~~~~~SpDg~~la~~~~~ 79 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI-------------ENATMPRISPDGKKIAFMRAN 79 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE-------------ESCEEEEECTTSSEEEEEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc-------------ccCCCeEECCCCCEEEEEEec
Confidence 45777788 888887642 256899999988764321 247889999999999988754
Q ss_pred ---C--cEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECC---------------------------CeEEE
Q psy8448 172 ---G--KVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFD---------------------------TYVRI 219 (482)
Q Consensus 172 ---g--~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d---------------------------g~i~i 219 (482)
+ .|.+||+.+++...... +.. +..++|+|+|+.|+.++.+ ..|++
T Consensus 80 ~~~~~~~l~~~~~~~g~~~~l~~--~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~ 156 (347)
T 2gop_A 80 EEKKVSEIWVADLETLSSKKILE--AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWI 156 (347)
T ss_dssp TTTTEEEEEEEETTTTEEEEEEE--ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEE
T ss_pred cCCCcceEEEEECCCCceEEEEc--CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEE
Confidence 2 48888888877655442 233 9999999999998887632 57999
Q ss_pred EeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCC-------cEEEEECCCCceeeeeeccCCCccceeEEEEcCCC
Q psy8448 220 HGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDG-------TVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKN 292 (482)
Q Consensus 220 ~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 292 (482)
||+.+++.+..+.. . .+..+.|+|+| +++++..++ ...+|.+.+++. ..+. .+ ..+..+ +|+|
T Consensus 157 ~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~---~~-~~~~~~--spdg 226 (347)
T 2gop_A 157 FDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMF---EK-VSFYAV--DSDG 226 (347)
T ss_dssp EETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEE---EE-ESEEEE--EECS
T ss_pred EECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEec---cC-cceeeE--CCCC
Confidence 99998877455554 3 78899999999 777776542 344554444443 3333 22 344444 8999
Q ss_pred CCEEEEEeCC--------CeEEEEEcCCcEEEEecCCcccCcCEEE-EEEcCCCCEEEEEeCCcEEEEE
Q psy8448 293 TEHFVVCNKT--------NTVVIMNMQGQIVRSLSSGKREGGDFLC-CTTSPRGEWIYCVGEDMVLVVR 352 (482)
Q Consensus 293 ~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~v~~-~~~~~~g~~l~~~~~dg~i~iw 352 (482)
+.++.++.+ ..|.+|| .++. ..+... +...+.. +.|+ ++ ++++++.++.+++|
T Consensus 227 -~~l~~~~~~~~~~~~~~~~l~~~d-~~~~-~~l~~~--~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~ 288 (347)
T 2gop_A 227 -ERILLYGKPEKKYMSEHNKLYIYD-GKEV-MGILDE--VDRGVGQAKIKD-GK-VYFTLFEEGSVNLY 288 (347)
T ss_dssp -SCEEEEECCSSSCCCSSCEEEEEC-SSCE-EESSTT--CCSEEEEEEEET-TE-EEEEEEETTEEEEE
T ss_pred -CEEEEEEccccCCccccceEEEEC-CCce-Eecccc--CCcccCCccEEc-Cc-EEEEEecCCcEEEE
Confidence 455544432 4688888 5543 334332 2456775 8999 88 88899999999955
No 175
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.78 E-value=2.1e-17 Score=152.52 Aligned_cols=221 Identities=12% Similarity=0.140 Sum_probs=146.2
Q ss_pred CCCEEEEEe------CCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC----------CCcE
Q psy8448 111 DGQYLITGS------VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ----------SGKV 174 (482)
Q Consensus 111 ~~~~l~s~~------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~----------dg~i 174 (482)
+++++++.. .|+.|.+||..+++....+... ..+ .++|+|++++++++.. ++.|
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g--------~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v 83 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTA--------FNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVV 83 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECC--------EEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEE
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCC--------CCC--ceEECCCCCEEEEEEecccccccCCCCCEE
Confidence 455555543 3679999999999877655433 233 8999999999999863 5679
Q ss_pred EEEEcCCCeEeEEeecc-----cCCCeEEEEEccCCCEEEEEEC--CCeEEEEeCCCCceEEE-eeccccceeEEEEcCC
Q psy8448 175 KIWKIATGQCLRKLEKA-----HSLGVTCIQFSRDNSQILTASF--DTYVRIHGLKSGKMLKE-FRGHSSFVNDITFTAD 246 (482)
Q Consensus 175 ~iwd~~~~~~~~~~~~~-----~~~~v~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~-~~~~~~~i~~l~~~~~ 246 (482)
.+||..+.+.+..+... +......++++|+|++|+++.. ++.|.+||+.+++.+.. +.. .+ ...+.+.|+
T Consensus 84 ~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~~-~~~v~~~p~ 161 (361)
T 2oiz_A 84 EVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-AG-CWSVIPQPN 161 (361)
T ss_dssp EEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-TT-EEEEEECTT
T ss_pred EEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-CC-cceeEEcCC
Confidence 99999998888777422 2345678999999999998874 57999999999988877 542 22 233566776
Q ss_pred C-CEEEEEeCCCcEEEEECCC-Cceeeeee---ccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc---EEEEe
Q psy8448 247 G-HSVLSASSDGTVKMWNLKT-TECTSTFK---SLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQ---IVRSL 318 (482)
Q Consensus 247 ~-~~l~~~~~dg~i~i~d~~~-~~~~~~~~---~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~ 318 (482)
+ ..+++.+.||.+.+|++.. ++...... .......++ .+.+.+++ ..++..+.++.+.++|+... ....+
T Consensus 162 ~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g-~~~~~~~~~~~v~v~d~~~~~~~~~~~~ 239 (361)
T 2oiz_A 162 RPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDK-DKAHFVSYYGNVYSADFSGDEVKVDGPW 239 (361)
T ss_dssp SSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECS-SEEEEEBTTSEEEEEECSSSSCEEEEEE
T ss_pred CCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccC-CEEEEEeCCCeEEEEEecCCCceecccc
Confidence 5 6788889999999999865 44431211 111122222 23345666 56666678899999998432 12222
Q ss_pred cCCc---cc----CcCEEEEEEcCCCCEEEEEeC
Q psy8448 319 SSGK---RE----GGDFLCCTTSPRGEWIYCVGE 345 (482)
Q Consensus 319 ~~~~---~~----~~~v~~~~~~~~g~~l~~~~~ 345 (482)
.... .. ......++++|+++.++++..
T Consensus 240 ~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~ 273 (361)
T 2oiz_A 240 SLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMH 273 (361)
T ss_dssp ESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEE
T ss_pred cccCccccccccccCCeeEEEEecCCCeEEEEEc
Confidence 1110 00 011113689999988887653
No 176
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.78 E-value=3.6e-17 Score=149.85 Aligned_cols=235 Identities=10% Similarity=0.084 Sum_probs=164.6
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q psy8448 101 SHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIA 180 (482)
Q Consensus 101 ~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~ 180 (482)
..|.++.|++++..++..+.++.++.|. ++....+.. +...+.+++|+|++++++++..++.|.+||..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--------~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~ 74 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTIT---AEPWLEISK--------KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPE 74 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CEEEEEEES--------SCCCEEEEEECTTSCEEEEETTTCEEEEECTT
T ss_pred cccceeeecCCccceeEEeecccCcccc---cceeEEEec--------cCccccCcEECCCCCEEEEECCCCEEEEEeCC
Confidence 4577788999888777777788888882 222222221 23567899999999977788889999999998
Q ss_pred CCeEeEEeecccCCCeEEEEEccCCCEEEEEECC----CeEEEEeCCCCceEEEee--ccccceeEEEEcCCCCEEEEEe
Q psy8448 181 TGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFD----TYVRIHGLKSGKMLKEFR--GHSSFVNDITFTADGHSVLSAS 254 (482)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~~~~ 254 (482)
+++..... ..+...+.+++++|+++++++...+ +.|.+||.++++....+. .+...+.+++++|+++++++..
T Consensus 75 ~~~~~~~~-~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~ 153 (333)
T 2dg1_A 75 TKEIKRPF-VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDF 153 (333)
T ss_dssp TCCEEEEE-ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEEC
T ss_pred CCcEEEEe-eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEec
Confidence 87765443 3456789999999999877776665 689999998876543332 2445789999999998777655
Q ss_pred C------CCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc--CCcEEEEec-----CC
Q psy8448 255 S------DGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM--QGQIVRSLS-----SG 321 (482)
Q Consensus 255 ~------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~-----~~ 321 (482)
. .+.|..+|..+++..... .....+..++|+|++..++++.+.++.|.+|+. .+..+..+. ..
T Consensus 154 ~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~ 229 (333)
T 2dg1_A 154 RGYSTNPLGGVYYVSPDFRTVTPII----QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYF 229 (333)
T ss_dssp CCBTTBCCEEEEEECTTSCCEEEEE----EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEEC
T ss_pred cccccCCCceEEEEeCCCCEEEEee----cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEec
Confidence 3 355667776655443322 223346889999998435566667889999999 344332211 11
Q ss_pred cccCcCEEEEEEcCCCCEEEEEeCCcEEEEE
Q psy8448 322 KREGGDFLCCTTSPRGEWIYCVGEDMVLVVR 352 (482)
Q Consensus 322 ~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw 352 (482)
.. ...+..++++++|+++++...++.|.+|
T Consensus 230 ~~-~~~~~~i~~d~~G~l~v~~~~~~~v~~~ 259 (333)
T 2dg1_A 230 TG-HEGPDSCCIDSDDNLYVAMYGQGRVLVF 259 (333)
T ss_dssp CS-SSEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred CC-CCCCCceEECCCCCEEEEEcCCCEEEEE
Confidence 10 1356789999999988888788999944
No 177
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.78 E-value=3.3e-16 Score=140.82 Aligned_cols=231 Identities=10% Similarity=0.080 Sum_probs=170.0
Q ss_pred CCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEE
Q psy8448 98 GSKSHVECARFSPDGQ-YLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKI 176 (482)
Q Consensus 98 ~h~~~v~~~~~s~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~i 176 (482)
.+.....+++|+|+|+ +++++..++.|..|+..++ ...+.. +...+.+++++|+++++++...++.|.+
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~--------~~~~~~~l~~~~dg~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMH--------PSHHQNGHCLNKQGHLIACSHGLRRLER 94 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEES--------SCSSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEEC--------CCCCcceeeECCCCcEEEEecCCCeEEE
Confidence 4566788999999998 7788888999999998876 333322 2457899999999998777767789999
Q ss_pred EEcCCCeEeEEeec---ccCCCeEEEEEccCCCEEEEE----E-------------CCCeEEEEeCCCCceEEEeecccc
Q psy8448 177 WKIATGQCLRKLEK---AHSLGVTCIQFSRDNSQILTA----S-------------FDTYVRIHGLKSGKMLKEFRGHSS 236 (482)
Q Consensus 177 wd~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~l~~~----~-------------~dg~i~i~d~~~~~~~~~~~~~~~ 236 (482)
||..+++....... .....+..++++|+|.++++. + ..+.|..++.. ++ +..+..+..
T Consensus 95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~ 172 (296)
T 3e5z_A 95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRV 172 (296)
T ss_dssp ECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCS
T ss_pred EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCC
Confidence 99978775443311 112346789999999887763 2 13467777765 44 344455666
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEECC-CCce---eeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCC
Q psy8448 237 FVNDITFTADGHSVLSASSDGTVKMWNLK-TTEC---TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQG 312 (482)
Q Consensus 237 ~i~~l~~~~~~~~l~~~~~dg~i~i~d~~-~~~~---~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~ 312 (482)
.+..++|+|+++.+++.+.++.|.+||+. +++. ...+ ......+..+++.++| .++++. ++.|.+|+.++
T Consensus 173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~---~~~~~~p~~i~~d~~G-~l~v~~--~~~v~~~~~~g 246 (296)
T 3e5z_A 173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF---TVEPGKTDGLRVDAGG-LIWASA--GDGVHVLTPDG 246 (296)
T ss_dssp SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE---CCSSSCCCSEEEBTTS-CEEEEE--TTEEEEECTTS
T ss_pred CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe---eCCCCCCCeEEECCCC-CEEEEc--CCeEEEECCCC
Confidence 78899999999988777778899999997 4544 2233 1344556789999998 665555 88999999998
Q ss_pred cEEEEecCCcccCcCEEEEEE-cCCCCEEEEEeCCcEEE
Q psy8448 313 QIVRSLSSGKREGGDFLCCTT-SPRGEWIYCVGEDMVLV 350 (482)
Q Consensus 313 ~~~~~~~~~~~~~~~v~~~~~-~~~g~~l~~~~~dg~i~ 350 (482)
+.+..+..+ .. +.+++| .|+++.|++++.++..+
T Consensus 247 ~~~~~~~~~---~~-~~~~~f~~~d~~~L~v~t~~~l~~ 281 (296)
T 3e5z_A 247 DELGRVLTP---QT-TSNLCFGGPEGRTLYMTVSTEFWS 281 (296)
T ss_dssp CEEEEEECS---SC-CCEEEEESTTSCEEEEEETTEEEE
T ss_pred CEEEEEECC---CC-ceeEEEECCCCCEEEEEcCCeEEE
Confidence 888877654 33 788999 68999999988875433
No 178
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.78 E-value=2e-16 Score=160.05 Aligned_cols=292 Identities=10% Similarity=0.062 Sum_probs=193.6
Q ss_pred HHHHHHhHhhhhhccCCCCCCceeeccCCc-----ccccccccccc-ccccc--eeeecCCCCcEEEEEEcCCCCEEEEE
Q psy8448 47 LLALLGQALKWQQHQGLLPPGTTIDLFRGK-----AAMKDQEEEKY-PTQLS--KQIKFGSKSHVECARFSPDGQYLITG 118 (482)
Q Consensus 47 l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~-~~~~~--~~~~~~h~~~v~~~~~s~~~~~l~s~ 118 (482)
+...+...++........|+|..+.+.... ..+|......- +..+. ..+..+|...+..++|||||++||.+
T Consensus 63 l~~~~~~~~~~~~~~~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~ 142 (710)
T 2xdw_A 63 YKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYG 142 (710)
T ss_dssp HHHHHHHHHCSCEECCCEEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEE
T ss_pred HHHHHHHhhccccCCCCEEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEE
Confidence 333333444444444555788876665322 13333321111 11110 12233565678999999999999877
Q ss_pred eCCC-----eEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCc----------------EEEE
Q psy8448 119 SVDG-----FIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGK----------------VKIW 177 (482)
Q Consensus 119 ~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~----------------i~iw 177 (482)
..++ .|++||+.+++...... . ...+..++|+|||+.|+.++.++. |++|
T Consensus 143 ~~~~G~~~~~i~v~d~~tg~~~~~~~-~--------~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 213 (710)
T 2xdw_A 143 LSASGSDWVTIKFMKVDGAKELPDVL-E--------RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYH 213 (710)
T ss_dssp EEETTCSCEEEEEEETTTTEEEEEEE-E--------EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEE
T ss_pred EcCCCCceEEEEEEECCCCCCCcccc-c--------CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEE
Confidence 6433 89999999988654321 1 123667999999999999988766 9999
Q ss_pred EcCCCeEe--EEee-cccCCCeEEEEEccCCCEEEEEEC-----CCeEEEEeCCC------Cc-eEEEeeccccceeEEE
Q psy8448 178 KIATGQCL--RKLE-KAHSLGVTCIQFSRDNSQILTASF-----DTYVRIHGLKS------GK-MLKEFRGHSSFVNDIT 242 (482)
Q Consensus 178 d~~~~~~~--~~~~-~~~~~~v~~i~~~~~~~~l~~~~~-----dg~i~i~d~~~------~~-~~~~~~~~~~~i~~l~ 242 (482)
++.+++.. ..+. ..+...+..+.|+|+|++|+.++. +..|++||+.+ ++ ....+..+...+.. .
T Consensus 214 ~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~ 292 (710)
T 2xdw_A 214 VLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-Y 292 (710)
T ss_dssp ETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-E
T ss_pred ECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-E
Confidence 99877532 2221 224455789999999999987764 56899999976 43 35566666665554 5
Q ss_pred EcCCCCEEEEEeCC----CcEEEEECCCCce--eeeeeccCCCc--cceeEEEEcCCCCCEEEEEeCCCe--EEEEEc-C
Q psy8448 243 FTADGHSVLSASSD----GTVKMWNLKTTEC--TSTFKSLGASD--IAVNSIHLLPKNTEHFVVCNKTNT--VVIMNM-Q 311 (482)
Q Consensus 243 ~~~~~~~l~~~~~d----g~i~i~d~~~~~~--~~~~~~~~~~~--~~v~~i~~~~~~~~~l~~~~~d~~--i~i~d~-~ 311 (482)
|+|+|+.|+..+.. +.|.+||+.++.. ...+. .+. ..+..+.|++++ .++++...++. |.+|++ +
T Consensus 293 ~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~-~lv~~~~~~g~~~l~~~~~~~ 368 (710)
T 2xdw_A 293 VTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV---PEHEKDVLEWVACVRSN-FLVLCYLHDVKNTLQLHDLAT 368 (710)
T ss_dssp EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE---CCCSSCEEEEEEEETTT-EEEEEEEETTEEEEEEEETTT
T ss_pred EeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceecc---CCCCCCeEEEEEEEcCC-EEEEEEEECCEEEEEEEECCC
Confidence 88899988877653 3599999987642 23332 222 367889998655 78888888874 566777 6
Q ss_pred CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEe----CCcEEEEEeeh
Q psy8448 312 GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVG----EDMVLVVRLIQ 355 (482)
Q Consensus 312 ~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~----~dg~i~iw~~~ 355 (482)
++.+..+..+ ...+..++++|+++.++... ..+.++.|++.
T Consensus 369 g~~~~~l~~~---~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~ 413 (710)
T 2xdw_A 369 GALLKIFPLE---VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT 413 (710)
T ss_dssp CCEEEEECCC---SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETT
T ss_pred CCEEEecCCC---CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECC
Confidence 7777776654 56788899999998776442 34789988875
No 179
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.77 E-value=9.2e-17 Score=161.97 Aligned_cols=293 Identities=10% Similarity=-0.012 Sum_probs=189.8
Q ss_pred hHHHHHHHhHhhhhhccCCCCCCceeeccCCc-----ccccccccccc-ccccce--eeecCCCCcEEEEEEcCCCCEEE
Q psy8448 45 SRLLALLGQALKWQQHQGLLPPGTTIDLFRGK-----AAMKDQEEEKY-PTQLSK--QIKFGSKSHVECARFSPDGQYLI 116 (482)
Q Consensus 45 ~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~-~~~~~~--~~~~~h~~~v~~~~~s~~~~~l~ 116 (482)
.++...+...++........++|..+.+.... ..+|......- +..+.. .+..+|...+.+++|||||++||
T Consensus 57 ~~l~~~~~~~~~~~~~~~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la 136 (695)
T 2bkl_A 57 EALAARFKELFYTDSVSTPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVA 136 (695)
T ss_dssp HHHHHHHHHHHSCCEECCCEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEE
T ss_pred HHHHHHHHHhhccccCCCCEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEE
Confidence 45655555666666666666888877665432 33454332111 111110 12235666899999999999998
Q ss_pred E-----EeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCc-------------EEEEE
Q psy8448 117 T-----GSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGK-------------VKIWK 178 (482)
Q Consensus 117 s-----~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~-------------i~iwd 178 (482)
. |+.+..|++||+.+++........ ......++|+|||+.|+.++.|.. |++|+
T Consensus 137 ~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--------~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~ 208 (695)
T 2bkl_A 137 FAQKPNAADEAVLHVIDVDSGEWSKVDVIE--------GGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHT 208 (695)
T ss_dssp EEEEETTCSCCEEEEEETTTCCBCSSCCBS--------CCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEE
T ss_pred EEECCCCCceEEEEEEECCCCCCcCCcccC--------cccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEE
Confidence 4 344578999999998864111111 011267899999999999998776 99999
Q ss_pred cCCCeE--eEEee-cccCCCeEEEEEccCCCEEEEEECCC----eEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEE
Q psy8448 179 IATGQC--LRKLE-KAHSLGVTCIQFSRDNSQILTASFDT----YVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVL 251 (482)
Q Consensus 179 ~~~~~~--~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~ 251 (482)
+.++.. ...+. ..+...+..+.|+|+|++|+.++.++ .|++++..+++ ...+..+...+....+ +++. ++
T Consensus 209 l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~-l~ 285 (695)
T 2bkl_A 209 LGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDR-FY 285 (695)
T ss_dssp TTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTE-EE
T ss_pred CCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCc-EE
Confidence 987762 22221 23445788999999999998877666 78888765554 3444445555666666 5666 55
Q ss_pred EEeC----CCcEEEEECCCCce--eeeeeccCCC-ccceeEEEEcCCCCCEEEEEeCCCeEEEEEc--CCcEEEEecCCc
Q psy8448 252 SASS----DGTVKMWNLKTTEC--TSTFKSLGAS-DIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM--QGQIVRSLSSGK 322 (482)
Q Consensus 252 ~~~~----dg~i~i~d~~~~~~--~~~~~~~~~~-~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~ 322 (482)
..+. ++.|.+||+.+++. ...+.. .+ ...+..++++ ++ .++++...++..++|.+ .++....+....
T Consensus 286 ~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~--~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~ 361 (695)
T 2bkl_A 286 VLTDEGAPRQRVFEVDPAKPARASWKEIVP--EDSSASLLSVSIV-GG-HLSLEYLKDATSEVRVATLKGKPVRTVQLPG 361 (695)
T ss_dssp EEECTTCTTCEEEEEBTTBCSGGGCEEEEC--CCSSCEEEEEEEE-TT-EEEEEEEETTEEEEEEEETTCCEEEECCCSS
T ss_pred EEECCCCCCCEEEEEeCCCCCccCCeEEec--CCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCCCeeEEecCCC
Confidence 4443 57899999987653 122221 22 4567888887 34 78888888998887765 566666654321
Q ss_pred ccCcCEEEEEEcCCCCEEEEEe----CCcEEEEEee
Q psy8448 323 REGGDFLCCTTSPRGEWIYCVG----EDMVLVVRLI 354 (482)
Q Consensus 323 ~~~~~v~~~~~~~~g~~l~~~~----~dg~i~iw~~ 354 (482)
...+..++++|+++.++... ..+.+++|++
T Consensus 362 --~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~ 395 (695)
T 2bkl_A 362 --VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSV 395 (695)
T ss_dssp --SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEET
T ss_pred --CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence 45567788999998777433 3467885544
No 180
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.77 E-value=1.3e-16 Score=147.16 Aligned_cols=258 Identities=14% Similarity=0.136 Sum_probs=171.9
Q ss_pred CCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEe----------CCCeEEEEecCCCceeeccccccc
Q psy8448 74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGS----------VDGFIEVWNFTTGKIRKDLKYQAQ 143 (482)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~~ 143 (482)
++.+.+++..... ....+. .+..+ .++|+|||++|++++ .++.|.+||+.+++....+.....
T Consensus 30 d~~v~v~D~~t~~----~~~~i~-~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~ 102 (361)
T 2oiz_A 30 ESRVHVYDYTNGK----FLGMVP-TAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPK 102 (361)
T ss_dssp GCEEEEEETTTCC----EEEEEE-CCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTT
T ss_pred cCeEEEEECCCCe----EEEEec-CCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcc
Confidence 3455566543322 223333 33444 899999999999886 257899999999888776654321
Q ss_pred cccccccccEEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCeEeEE-eecccCCCeEEEEEccCC-CEEEEEECCCeEEE
Q psy8448 144 DNFMLMEEAVMSLAYSRDSEMLASGSQ--SGKVKIWKIATGQCLRK-LEKAHSLGVTCIQFSRDN-SQILTASFDTYVRI 219 (482)
Q Consensus 144 ~~~~~h~~~i~~l~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~i 219 (482)
. ..+......++++|+|++|+++.. ++.|.+||+.+++.+.. +. .. ....+.+.|++ ..+++.+.||.+.+
T Consensus 103 ~--~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~--~~-~~~~v~~~p~~~~~~~~~~~dg~~~~ 177 (361)
T 2oiz_A 103 R--VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA--AA-GCWSVIPQPNRPRSFMTICGDGGLLT 177 (361)
T ss_dssp B--CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG--GT-TEEEEEECTTSSSEEEEEETTSSEEE
T ss_pred c--cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec--CC-CcceeEEcCCCCeeEEEECCCCcEEE
Confidence 0 001234667899999999998874 57999999999988877 52 22 23335677765 67788889999999
Q ss_pred EeCCC-CceEEE------eeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCce--eeeeeccC-----C--Cccce
Q psy8448 220 HGLKS-GKMLKE------FRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTEC--TSTFKSLG-----A--SDIAV 283 (482)
Q Consensus 220 ~d~~~-~~~~~~------~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~-----~--~~~~v 283 (482)
+++.. ++.... +.....+ ..+.+.+++..++..+.++.|.++|+..... ...+.... . .....
T Consensus 178 v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~ 256 (361)
T 2oiz_A 178 INLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGY 256 (361)
T ss_dssp EEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCS
T ss_pred EEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCe
Confidence 99865 554421 1222222 2334467777888888899999999976542 12221100 0 01112
Q ss_pred eEEEEcCCCCCEEEEEe----------CCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448 284 NSIHLLPKNTEHFVVCN----------KTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLV 350 (482)
Q Consensus 284 ~~i~~~~~~~~~l~~~~----------~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~ 350 (482)
..++++|++..++++.. ..+.|.+||. +++.+..+..+ . +..++|+|||++|++++. +.|.
T Consensus 257 ~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~---~--p~~ia~spdg~~l~v~n~-~~v~ 328 (361)
T 2oiz_A 257 NLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR---D--ALSMTIDQQRNLMLTLDG-GNVN 328 (361)
T ss_dssp SCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT---T--CCEEEEETTTTEEEEECS-SCEE
T ss_pred eEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC---C--eeEEEECCCCCEEEEeCC-CeEE
Confidence 23789999855555544 1358999999 67888887764 2 789999999999998887 9999
No 181
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.76 E-value=2.1e-17 Score=155.19 Aligned_cols=239 Identities=9% Similarity=-0.025 Sum_probs=156.2
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEE-------------EEEEcCCCCEEEEE-
Q psy8448 103 VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVM-------------SLAYSRDSEMLASG- 168 (482)
Q Consensus 103 v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~-------------~l~~~~~~~~l~~~- 168 (482)
...+.|+|||++|+.++.++.|++||+.+++.......+.. .......+. .+.|+|+++.++.+
T Consensus 83 ~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~--~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~ 160 (396)
T 3c5m_A 83 TFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEE--WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAE 160 (396)
T ss_dssp TTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT--EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHH
T ss_pred cccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccc--cCCCCCEEEeccCCccccccccccccCCCCcceeeee
Confidence 33478999999999999999999999998875443332210 000000000 03567888877654
Q ss_pred ----eCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEcc-CCCEEEEEECC------CeEEEEeCCCCceEEEeecc-cc
Q psy8448 169 ----SQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSR-DNSQILTASFD------TYVRIHGLKSGKMLKEFRGH-SS 236 (482)
Q Consensus 169 ----~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~-~~ 236 (482)
..+..|.+||+.+++..... .+...+..+.|+| +++.|+..+.+ ..|.+||+..++........ ..
T Consensus 161 ~~~~~~~~~l~~~d~~~g~~~~~~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~ 238 (396)
T 3c5m_A 161 FYHTNPTCRLIKVDIETGELEVIH--QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGE 238 (396)
T ss_dssp HHHTCCCEEEEEEETTTCCEEEEE--EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTE
T ss_pred eccCCCcceEEEEECCCCcEEeec--cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCc
Confidence 35678999999888765544 4667789999999 78877776643 36889998766543322211 23
Q ss_pred ceeEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeeeeeccCCCccceeEEEEcC-CCCCEEEEEe----------
Q psy8448 237 FVNDITFTADGHSVLSASSD-----GTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLP-KNTEHFVVCN---------- 300 (482)
Q Consensus 237 ~i~~l~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~~l~~~~---------- 300 (482)
.+..++|+|+|+.|+.++.+ +.|.+||+.+++...... . . ... +.|+| ++ .+++.++
T Consensus 239 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~---~-~-~~~-~~~s~~dg-~~l~~~~~~~p~~~~~~ 311 (396)
T 3c5m_A 239 SCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV---M-P-PCS-HLMSNFDG-SLMVGDGCDAPVDVADA 311 (396)
T ss_dssp EEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE---C-C-SEE-EEEECSSS-SEEEEEECCC-------
T ss_pred cccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee---C-C-CCC-CCccCCCC-ceEEEecCCcceeeccc
Confidence 57889999999988776543 449999999887544322 1 1 122 88999 88 5666654
Q ss_pred ------CCCeEEEEEcCCcEEEEecCCccc--------CcCEEEEEEcCCCCEEEEEeC-CcEEEEE
Q psy8448 301 ------KTNTVVIMNMQGQIVRSLSSGKRE--------GGDFLCCTTSPRGEWIYCVGE-DMVLVVR 352 (482)
Q Consensus 301 ------~d~~i~i~d~~~~~~~~~~~~~~~--------~~~v~~~~~~~~g~~l~~~~~-dg~i~iw 352 (482)
.+..|++||+.+.....+..+... ...+..++|+|||+.|+..+. ++...+|
T Consensus 312 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~ 378 (396)
T 3c5m_A 312 DSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIY 378 (396)
T ss_dssp ---CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred cccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEE
Confidence 347899999954333344332110 002456789999999887664 5666655
No 182
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.76 E-value=1.8e-14 Score=129.57 Aligned_cols=238 Identities=14% Similarity=0.094 Sum_probs=170.2
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy8448 98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIW 177 (482)
Q Consensus 98 ~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iw 177 (482)
.+...+.+++++++|+++++...++.|.+||.. ++... +.... +...+.++++.+++..+++...++.|..|
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~-~~~~~------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~ 83 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITE-YPLPT------PDAKVMCLTISSDGEVWFTENAANKIGRI 83 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEE-EECSS------TTCCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEE-ecCCc------ccCceeeEEECCCCCEEEeCCCCCeEEEE
Confidence 445689999999999988877668899999987 55332 21111 13578999999999877777668899999
Q ss_pred EcCCCeEeEEee-cccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEE-eeccccceeEEEEcCCCCEEEEEeC
Q psy8448 178 KIATGQCLRKLE-KAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKE-FRGHSSFVNDITFTADGHSVLSASS 255 (482)
Q Consensus 178 d~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~l~~~~~~~~l~~~~~ 255 (482)
|.. ++. ..+. ......+..+++.+++..+++...++.|..||. +++.... .......+.+++++++++.+++...
T Consensus 84 ~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~ 160 (299)
T 2z2n_A 84 TKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQ 160 (299)
T ss_dssp CTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETT
T ss_pred CCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCC
Confidence 976 433 2221 224557899999999987777767889999998 5554332 2234556899999999987777767
Q ss_pred CCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcC
Q psy8448 256 DGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSP 335 (482)
Q Consensus 256 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 335 (482)
++.|..||. +++... +.. ......+..+++.+++ .++++...++.|..||.++... .+... .....+.++++++
T Consensus 161 ~~~i~~~~~-~g~~~~-~~~-~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~~~-~~~~~-~~~~~~~~i~~~~ 234 (299)
T 2z2n_A 161 NNAIGRITE-SGDITE-FKI-PTPASGPVGITKGNDD-ALWFVEIIGNKIGRITTSGEIT-EFKIP-TPNARPHAITAGA 234 (299)
T ss_dssp TTEEEEECT-TCCEEE-EEC-SSTTCCEEEEEECTTS-SEEEEETTTTEEEEECTTCCEE-EEECS-STTCCEEEEEECS
T ss_pred CCEEEEEcC-CCcEEE-eeC-CCCCCcceeEEECCCC-CEEEEccCCceEEEECCCCcEE-EEECC-CCCCCceeEEECC
Confidence 789999998 665443 211 1334567899999987 6777766788999999965533 33221 1246788999999
Q ss_pred CCCEEEEEeCCcEEEEE
Q psy8448 336 RGEWIYCVGEDMVLVVR 352 (482)
Q Consensus 336 ~g~~l~~~~~dg~i~iw 352 (482)
+|+..++...++.|..|
T Consensus 235 ~g~l~v~~~~~~~i~~~ 251 (299)
T 2z2n_A 235 GIDLWFTEWGANKIGRL 251 (299)
T ss_dssp TTCEEEEETTTTEEEEE
T ss_pred CCCEEEeccCCceEEEE
Confidence 99876666577888844
No 183
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.76 E-value=3.3e-15 Score=136.73 Aligned_cols=239 Identities=12% Similarity=0.090 Sum_probs=170.2
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC----Cc
Q psy8448 98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS----GK 173 (482)
Q Consensus 98 ~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d----g~ 173 (482)
++...+.+++|+|+|++++++..++.|.+||..+++....... +...+.+++++|+++++++...+ +.
T Consensus 42 ~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~--------~~~~~~~i~~~~dg~l~v~~~~~~~~~~~ 113 (333)
T 2dg1_A 42 KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVS--------HKANPAAIKIHKDGRLFVCYLGDFKSTGG 113 (333)
T ss_dssp SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC--------SSSSEEEEEECTTSCEEEEECTTSSSCCE
T ss_pred ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeC--------CCCCcceEEECCCCcEEEEeCCCCCCCce
Confidence 5666789999999999888888899999999988775432211 24679999999999877777666 68
Q ss_pred EEEEEcCCCeEeEEee-cccCCCeEEEEEccCCCEEEEEEC------CCeEEEEeCCCCceEEEeeccccceeEEEEcCC
Q psy8448 174 VKIWKIATGQCLRKLE-KAHSLGVTCIQFSRDNSQILTASF------DTYVRIHGLKSGKMLKEFRGHSSFVNDITFTAD 246 (482)
Q Consensus 174 i~iwd~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~ 246 (482)
|.+||..++.....+. ......+..++++|+|..+++... .+.|..+|..+++... +......+..++|+|+
T Consensus 114 i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~d 192 (333)
T 2dg1_A 114 IFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTD 192 (333)
T ss_dssp EEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTT
T ss_pred EEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCC
Confidence 9999988776543332 123457899999999987766553 3567778776555433 3233445789999999
Q ss_pred CCEEEEE-eCCCcEEEEECCC-Cceeeee-----eccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEec
Q psy8448 247 GHSVLSA-SSDGTVKMWNLKT-TECTSTF-----KSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLS 319 (482)
Q Consensus 247 ~~~l~~~-~~dg~i~i~d~~~-~~~~~~~-----~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 319 (482)
++.|+.+ +.++.|.+||+++ +.....+ .....+ ..+..+++++++ .++++...++.|.+||.+++.+..+.
T Consensus 193 g~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G-~l~v~~~~~~~v~~~d~~g~~~~~~~ 270 (333)
T 2dg1_A 193 EKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDD-NLYVAMYGQGRVLVFNKRGYPIGQIL 270 (333)
T ss_dssp SSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTC-CEEEEEETTTEEEEECTTSCEEEEEE
T ss_pred CCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCC-CEEEEEcCCCEEEEECCCCCEEEEEE
Confidence 9866554 4578999999964 3322211 111111 367789999998 77777778899999999887777765
Q ss_pred CCcc---cCcCEEEEEEcCCCCEEEEEeCCc
Q psy8448 320 SGKR---EGGDFLCCTTSPRGEWIYCVGEDM 347 (482)
Q Consensus 320 ~~~~---~~~~v~~~~~~~~g~~l~~~~~dg 347 (482)
.... +...+.+++|+||++.|++++.++
T Consensus 271 ~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 271 IPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp CTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred cCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 4321 111578899999988887666654
No 184
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.75 E-value=1e-15 Score=135.55 Aligned_cols=238 Identities=8% Similarity=-0.060 Sum_probs=169.1
Q ss_pred cEEEEEEcCCCCEEE-EEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q psy8448 102 HVECARFSPDGQYLI-TGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIA 180 (482)
Q Consensus 102 ~v~~~~~s~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~ 180 (482)
...+++++++|++++ +...++.|.+|+..++...... .. +...+.++++.++++.+++.. ++.|.+||..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~-~~-------~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~ 95 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP-FN-------GLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAG 95 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECC-CC-------SCCSCCCEEECTTCCEEEEET-TTEEEEECTT
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEe-eC-------CcCCcceeEECCCCCEEEEcC-CCEEEEEeCC
Confidence 678999999999777 5467889999997655432211 11 124578899999998665555 8899999976
Q ss_pred CCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEE
Q psy8448 181 TGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVK 260 (482)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~ 260 (482)
.... ..+.......+..+++++++..+++...++.|.+|+..+.............+.+++++++++.+++...++.|.
T Consensus 96 ~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~ 174 (270)
T 1rwi_B 96 SNNQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVV 174 (270)
T ss_dssp CSCC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEE
T ss_pred CceE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEE
Confidence 5543 333223335689999999998777767788999998765544332223334678999999999777766788999
Q ss_pred EEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEE
Q psy8448 261 MWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWI 340 (482)
Q Consensus 261 i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l 340 (482)
+||........... .....+..+++.+++ .++++...++.|.+|+..+......... +...+.+++++++|+.+
T Consensus 175 ~~~~~~~~~~~~~~---~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~~~~~~~~--~~~~p~~i~~~~~g~l~ 248 (270)
T 1rwi_B 175 KLEAESNNQVVLPF---TDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTTSTVLPFT--GLNTPLAVAVDSDRTVY 248 (270)
T ss_dssp EECTTTCCEEECCC---SSCCSEEEEEECTTC-CEEEEETTTSCEEEECTTCSCCEECCCC--SCSCEEEEEECTTCCEE
T ss_pred EEecCCCceEeecc---cCCCCceEEEECCCC-CEEEEECCCCcEEEEcCCCCcceeeccC--CCCCceeEEECCCCCEE
Confidence 99988765433221 223567899999998 7888877889999999976544443321 13568899999999988
Q ss_pred EEEeCCcEEEEEeeh
Q psy8448 341 YCVGEDMVLVVRLIQ 355 (482)
Q Consensus 341 ~~~~~dg~i~iw~~~ 355 (482)
++...++.|+++++.
T Consensus 249 v~~~~~~~v~~~~~~ 263 (270)
T 1rwi_B 249 VADRGNDRVVKLTSL 263 (270)
T ss_dssp EEEGGGTEEEEECCC
T ss_pred EEECCCCEEEEEcCC
Confidence 888899999976654
No 185
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.74 E-value=7.5e-16 Score=155.81 Aligned_cols=234 Identities=12% Similarity=0.099 Sum_probs=154.1
Q ss_pred CCCCEEEEEeCC-----CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCC-----cEEEEEc
Q psy8448 110 PDGQYLITGSVD-----GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSG-----KVKIWKI 179 (482)
Q Consensus 110 ~~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg-----~i~iwd~ 179 (482)
|+|++++....+ +.+.+.+...++....+... ....+|...+..++|||||++|+.+..++ .|++||+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~--~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~ 158 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPN--ILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKV 158 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGG--GGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEET
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHH--HhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEEC
Confidence 788887755422 23455554444332211111 11122344688999999999999876543 8999999
Q ss_pred CCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCe----------------EEEEeCCCCceE--EEee--cccccee
Q psy8448 180 ATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTY----------------VRIHGLKSGKML--KEFR--GHSSFVN 239 (482)
Q Consensus 180 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~----------------i~i~d~~~~~~~--~~~~--~~~~~i~ 239 (482)
.+++...... ....+..++|+|||+.|+.++.++. |++|++.+++.. ..+. .+...+.
T Consensus 159 ~tg~~~~~~~--~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~ 236 (710)
T 2xdw_A 159 DGAKELPDVL--ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMG 236 (710)
T ss_dssp TTTEEEEEEE--EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEE
T ss_pred CCCCCCcccc--cCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEE
Confidence 9998766432 2223678999999999999988766 999999887632 2222 3455678
Q ss_pred EEEEcCCCCEEEEEeC-----CCcEEEEECCC------Cc-eeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC---Ce
Q psy8448 240 DITFTADGHSVLSASS-----DGTVKMWNLKT------TE-CTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT---NT 304 (482)
Q Consensus 240 ~l~~~~~~~~l~~~~~-----dg~i~i~d~~~------~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d---~~ 304 (482)
.+.|+|||++|+.++. +..|.+||+.+ +. ....+. .+...+.. .|+|+|..+++.+..+ +.
T Consensus 237 ~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~---~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~ 312 (710)
T 2xdw_A 237 GAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLI---DNFEGEYD-YVTNEGTVFTFKTNRHSPNYR 312 (710)
T ss_dssp EEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE---CSSSSCEE-EEEEETTEEEEEECTTCTTCE
T ss_pred EEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEee---CCCCcEEE-EEeccCCEEEEEECCCCCCCE
Confidence 9999999999988764 56899999986 43 234443 33334443 4788884455554433 36
Q ss_pred EEEEEcCCc---EEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEE
Q psy8448 305 VVIMNMQGQ---IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVR 352 (482)
Q Consensus 305 i~i~d~~~~---~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw 352 (482)
|.+||+.+. ....+..+.. ...+..++|++++.++++...|+..+||
T Consensus 313 l~~~d~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~lv~~~~~~g~~~l~ 362 (710)
T 2xdw_A 313 LINIDFTDPEESKWKVLVPEHE-KDVLEWVACVRSNFLVLCYLHDVKNTLQ 362 (710)
T ss_dssp EEEEETTSCCGGGCEEEECCCS-SCEEEEEEEETTTEEEEEEEETTEEEEE
T ss_pred EEEEeCCCCCcccceeccCCCC-CCeEEEEEEEcCCEEEEEEEECCEEEEE
Confidence 999998532 1234433321 2357789999888888899999988766
No 186
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.73 E-value=1.4e-15 Score=140.04 Aligned_cols=220 Identities=16% Similarity=0.191 Sum_probs=152.7
Q ss_pred CcEEEEEEcCCCCEEEEEeCC---C--eEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC----
Q psy8448 101 SHVECARFSPDGQYLITGSVD---G--FIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS---- 171 (482)
Q Consensus 101 ~~v~~~~~s~~~~~l~s~~~d---g--~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d---- 171 (482)
..+.+++|||||++||.++.+ + .|.+|++.+++....... .. +..++|+|+++.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~---------~~-~~~~~wspdg~~l~~~~~~~~~~ 128 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA---------KN-IRSLEWNEDSRKLLIVGFKRRED 128 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE---------SE-EEEEEECTTSSEEEEEEECCCC-
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC---------CC-ccceeECCCCCEEEEEEccCCCc
Confidence 468889999999999987643 3 488888887765433221 23 8899999999999888642
Q ss_pred -----------------------CcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCC-------eEEEEe
Q psy8448 172 -----------------------GKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDT-------YVRIHG 221 (482)
Q Consensus 172 -----------------------g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg-------~i~i~d 221 (482)
..|.+||+.+++.+..+.. . .+..++|+|+| .++++..++ ...+|.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~--~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~ 204 (347)
T 2gop_A 129 EDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK--P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYI 204 (347)
T ss_dssp --------CCCC---------CEEEEEEEETTTTEEEEEEEE--E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEE
T ss_pred CCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC--C-CcccccCCCCe-EEEEEecccccccccccccEEE
Confidence 5799999988887455533 3 78899999999 777776542 334443
Q ss_pred CCCCceEEEeeccccceeEEEEcCCCCEEEEEeCC--------CcEEEEECCCCceeeeeeccCCCccceeE-EEEcCCC
Q psy8448 222 LKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSD--------GTVKMWNLKTTECTSTFKSLGASDIAVNS-IHLLPKN 292 (482)
Q Consensus 222 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~-i~~~~~~ 292 (482)
+.+++. ..+..+ ..+..+ +|+|+.|+.++.+ ..|.+|| +++...... .+...+.. +.|+ ++
T Consensus 205 ~d~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~---~~~~~~~~~~~~s-dg 274 (347)
T 2gop_A 205 WEDGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILD---EVDRGVGQAKIKD-GK 274 (347)
T ss_dssp EETTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESST---TCCSEEEEEEEET-TE
T ss_pred eCCCce-EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccc---cCCcccCCccEEc-Cc
Confidence 335543 444444 455444 9999988887754 3688888 555433332 45567776 8898 65
Q ss_pred CCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEE-EEEe
Q psy8448 293 TEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVL-VVRL 353 (482)
Q Consensus 293 ~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i-~iw~ 353 (482)
++++++.++.+++| + +++.. .+..+ ...+.+++|+| .++++++.++.. .+|.
T Consensus 275 --~~~~~~~~~~~~l~-~~~g~~~-~~~~~---~~~v~~~~~s~--~~~~~~~~~~~~~~l~~ 328 (347)
T 2gop_A 275 --VYFTLFEEGSVNLY-IWDGEIK-PIAKG---RHWIMGFDVDE--IVVYLKETATRLRELFT 328 (347)
T ss_dssp --EEEEEEETTEEEEE-EESSSEE-EEECS---SSEEEEEEESS--SEEEEEECSSSCCEEEE
T ss_pred --EEEEEecCCcEEEE-EcCCceE-EEecC---CCeEEeeeeeC--cEEEEEcCCCChHHheE
Confidence 88889999999999 8 45543 33322 56788999999 677777777654 6553
No 187
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.73 E-value=3.7e-15 Score=131.66 Aligned_cols=217 Identities=16% Similarity=0.133 Sum_probs=171.9
Q ss_pred CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeec
Q psy8448 111 DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEK 190 (482)
Q Consensus 111 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 190 (482)
.+++|++++.++.|.+||.++|+.+..+..+. ...+.++.+.|+|++++ +.++.|..||. +++.+..+..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~-------~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~ 73 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEK-------GWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAA 73 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCT-------TCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEEC
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCc-------cCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcC
Confidence 46789999999999999999999887766532 13578899999999888 45778999998 8999998854
Q ss_pred ccCCCeEEEEEccCCCEEEEEEC-CCeEEEEeCCCCceEEEeec------cccceeEEEEcCCCCEEEEEeCCCcEEEEE
Q psy8448 191 AHSLGVTCIQFSRDNSQILTASF-DTYVRIHGLKSGKMLKEFRG------HSSFVNDITFTADGHSVLSASSDGTVKMWN 263 (482)
Q Consensus 191 ~~~~~v~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~------~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d 263 (482)
.....+.++.+.++|+.+++.+. ++.|..+|. +++.+..+.. +......+++.++|+++++...++.|..||
T Consensus 74 ~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d 152 (276)
T 3no2_A 74 PAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIA 152 (276)
T ss_dssp CTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEEC
T ss_pred CCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEEC
Confidence 33457889999999999999887 788888886 7877766642 223456678899999999999999999999
Q ss_pred CCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CcEEEEecCCcc---cCcCEEEEEEcCCCCE
Q psy8448 264 LKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSGKR---EGGDFLCCTTSPRGEW 339 (482)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~---~~~~v~~~~~~~~g~~ 339 (482)
.. ++.+..+.. .....++...+++ .+++++..++.|..+|.. |+.+..+..... ....+..++..++|..
T Consensus 153 ~~-G~~~w~~~~----~~~~~~~~~~~~g-~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i 226 (276)
T 3no2_A 153 PN-GQLLNSVKL----SGTPFSSAFLDNG-DCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGL 226 (276)
T ss_dssp TT-SCEEEEEEC----SSCCCEEEECTTS-CEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCE
T ss_pred CC-CCEEEEEEC----CCCccceeEcCCC-CEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCE
Confidence 98 998888863 2345567788887 788888888899999995 999888864321 1234788999999999
Q ss_pred EEEEe
Q psy8448 340 IYCVG 344 (482)
Q Consensus 340 l~~~~ 344 (482)
+++..
T Consensus 227 ~v~~~ 231 (276)
T 3no2_A 227 YICNW 231 (276)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 88874
No 188
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.71 E-value=1.7e-14 Score=131.41 Aligned_cols=214 Identities=10% Similarity=0.096 Sum_probs=152.1
Q ss_pred CCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEE
Q psy8448 120 VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCI 199 (482)
Q Consensus 120 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i 199 (482)
.++.|.++|..+++....+...... .........+.+. +++.+++...++.|.+||..+++.+..+. .......+
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~--~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~--~~~~p~~i 89 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANG--FKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT--GFTSPRYI 89 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHS--SCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE--CCSSEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcC--cccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC--CCCCCcEE
Confidence 3789999999999876655321100 0112346677774 34455555667899999999999988873 44678899
Q ss_pred EEccCCCEEEEEE-CCCeEEEEeCCCCceEEEeeccc-----cceeEEEEcCCCCEEEEEe--CCCcEEEEECCCCceee
Q psy8448 200 QFSRDNSQILTAS-FDTYVRIHGLKSGKMLKEFRGHS-----SFVNDITFTADGHSVLSAS--SDGTVKMWNLKTTECTS 271 (482)
Q Consensus 200 ~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~-----~~i~~l~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~ 271 (482)
++++++ .++++. .++.|.+||..+++....+.... .....+++ . +..++++. .++.|.++|..+++...
T Consensus 90 ~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~ 166 (328)
T 3dsm_A 90 HFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVD 166 (328)
T ss_dssp EEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEE
T ss_pred EEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEE
Confidence 999988 455555 89999999999998877766332 14567777 3 44555554 48899999999998877
Q ss_pred eeeccCCCccceeEEEEcCCCCCEEEEEeCC----------CeEEEEEcC-CcEEEEecCCcccCcCEEEEEEcCCCCEE
Q psy8448 272 TFKSLGASDIAVNSIHLLPKNTEHFVVCNKT----------NTVVIMNMQ-GQIVRSLSSGKREGGDFLCCTTSPRGEWI 340 (482)
Q Consensus 272 ~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d----------~~i~i~d~~-~~~~~~~~~~~~~~~~v~~~~~~~~g~~l 340 (482)
.+.. ......+.++|++ ++++++..+ +.|.++|.. ++....+.... ......++++|++++|
T Consensus 167 ~i~~----g~~p~~i~~~~dG-~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--g~~p~~la~~~d~~~l 239 (328)
T 3dsm_A 167 ELTI----GIQPTSLVMDKYN-KMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--GDWPSEVQLNGTRDTL 239 (328)
T ss_dssp EEEC----SSCBCCCEECTTS-EEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT--TCCCEEEEECTTSCEE
T ss_pred EEEc----CCCccceEEcCCC-CEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC--CCCceeEEEecCCCEE
Confidence 7752 2234678899988 666666554 789999994 66555554321 2357899999999999
Q ss_pred EEEeCCcEEE
Q psy8448 341 YCVGEDMVLV 350 (482)
Q Consensus 341 ~~~~~dg~i~ 350 (482)
+++.. .|.
T Consensus 240 yv~~~--~v~ 247 (328)
T 3dsm_A 240 YWINN--DIW 247 (328)
T ss_dssp EEESS--SEE
T ss_pred EEEcc--EEE
Confidence 98765 566
No 189
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.71 E-value=7.7e-15 Score=131.83 Aligned_cols=187 Identities=12% Similarity=0.012 Sum_probs=134.7
Q ss_pred cccEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceE
Q psy8448 150 EEAVMSLAYSRDSE-MLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKML 228 (482)
Q Consensus 150 ~~~i~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 228 (482)
.....+++|+|+++ +++++..++.|..||..++ ...+ ..+...+.+++++++|.++++...++.|.+||..+++..
T Consensus 27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~-~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~ 103 (296)
T 3e5z_A 27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPE-MHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWE 103 (296)
T ss_dssp CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEE-ESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEE
T ss_pred CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEE-ECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEE
Confidence 35678999999998 7777888999999998877 4555 346677999999999997777666789999999888754
Q ss_pred EEeecc----ccceeEEEEcCCCCEEEEE----e-------------CCCcEEEEECCCCceeeeeeccCCCccceeEEE
Q psy8448 229 KEFRGH----SSFVNDITFTADGHSVLSA----S-------------SDGTVKMWNLKTTECTSTFKSLGASDIAVNSIH 287 (482)
Q Consensus 229 ~~~~~~----~~~i~~l~~~~~~~~l~~~----~-------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~ 287 (482)
...... ...+..++++|+|+++++. + ..+.|..++.. ++. ..+. ........++
T Consensus 104 ~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~---~~~~~~~gi~ 178 (296)
T 3e5z_A 104 SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPI---RDRVKPNGLA 178 (296)
T ss_dssp EEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEE---CCCSSEEEEE
T ss_pred EEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEee---cCCCCCccEE
Confidence 433221 2346789999999988873 2 13456666655 443 3332 3445668999
Q ss_pred EcCCCCCEEEEEeCCCeEEEEEcC--CcE---EEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448 288 LLPKNTEHFVVCNKTNTVVIMNMQ--GQI---VRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLV 350 (482)
Q Consensus 288 ~~~~~~~~l~~~~~d~~i~i~d~~--~~~---~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~ 350 (482)
|+|++ ..+++.+.++.|.+|++. +.. ...+ .. ....+..++++++|+++++. ++.|.
T Consensus 179 ~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~--~~~~p~~i~~d~~G~l~v~~--~~~v~ 240 (296)
T 3e5z_A 179 FLPSG-NLLVSDTGDNATHRYCLNARGETEYQGVHF-TV--EPGKTDGLRVDAGGLIWASA--GDGVH 240 (296)
T ss_dssp ECTTS-CEEEEETTTTEEEEEEECSSSCEEEEEEEE-CC--SSSCCCSEEEBTTSCEEEEE--TTEEE
T ss_pred ECCCC-CEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eC--CCCCCCeEEECCCCCEEEEc--CCeEE
Confidence 99999 566777788999999984 443 2333 22 24456789999999866655 78888
No 190
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.71 E-value=9.5e-16 Score=154.60 Aligned_cols=233 Identities=12% Similarity=0.082 Sum_probs=151.4
Q ss_pred cCCCCEEEEEeCCC-----eEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEE-----eCCCcEEEEE
Q psy8448 109 SPDGQYLITGSVDG-----FIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASG-----SQSGKVKIWK 178 (482)
Q Consensus 109 s~~~~~l~s~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~-----~~dg~i~iwd 178 (482)
+|+|++++....++ .+.+.+...++....+... ....+|...+..++|||||++|+.+ +.+..|++||
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~--~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~d 153 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPN--GWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVID 153 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGG--GSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchH--HhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEE
Confidence 37888887665433 3444454444332222211 1112345578999999999999854 3346899999
Q ss_pred cCCCeEe-EEeecccCCCeEEEEEccCCCEEEEEECCCe-------------EEEEeCCCCc----eEEEeeccccceeE
Q psy8448 179 IATGQCL-RKLEKAHSLGVTCIQFSRDNSQILTASFDTY-------------VRIHGLKSGK----MLKEFRGHSSFVND 240 (482)
Q Consensus 179 ~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~-------------i~i~d~~~~~----~~~~~~~~~~~i~~ 240 (482)
+.+++.+ ... ........++|+|||+.|+.++.|.. |++|++.+++ .+.....+...+..
T Consensus 154 l~tg~~~~~~~--~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~ 231 (695)
T 2bkl_A 154 VDSGEWSKVDV--IEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQ 231 (695)
T ss_dssp TTTCCBCSSCC--BSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEE
T ss_pred CCCCCCcCCcc--cCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEE
Confidence 9998764 211 11111267899999999999988776 9999998876 23333345567889
Q ss_pred EEEcCCCCEEEEEeCCC----cEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEe---CCCeEEEEEcC-C
Q psy8448 241 ITFTADGHSVLSASSDG----TVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCN---KTNTVVIMNMQ-G 312 (482)
Q Consensus 241 l~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~---~d~~i~i~d~~-~ 312 (482)
+.|+|||++|+.++.++ .|.++|..+++... +. .+...+....+ +++. +++.+. .++.|.+||+. +
T Consensus 232 ~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~-l~---~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~ 305 (695)
T 2bkl_A 232 SDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRL-LV---KGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKP 305 (695)
T ss_dssp EEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEE-EE---ECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBC
T ss_pred EEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEE-ee---cCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCC
Confidence 99999999998877665 67777765554333 32 33334455555 6774 555554 25789999984 3
Q ss_pred cE--EEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448 313 QI--VRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRL 353 (482)
Q Consensus 313 ~~--~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~ 353 (482)
.. ...+..+. ....+..++++ ++.++++...|+..++|.
T Consensus 306 ~~~~~~~l~~~~-~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~ 346 (695)
T 2bkl_A 306 ARASWKEIVPED-SSASLLSVSIV-GGHLSLEYLKDATSEVRV 346 (695)
T ss_dssp SGGGCEEEECCC-SSCEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred CccCCeEEecCC-CCCeEEEEEEE-CCEEEEEEEECCEEEEEE
Confidence 31 23333221 13457778888 677888999999999773
No 191
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.70 E-value=1.7e-13 Score=132.83 Aligned_cols=233 Identities=13% Similarity=0.092 Sum_probs=167.1
Q ss_pred CCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcC--CCeEeEE
Q psy8448 110 PDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIA--TGQCLRK 187 (482)
Q Consensus 110 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~ 187 (482)
|.+.++++...+++|.++|..+++.+..+... ..+..+.|+|+++++++++.|+.|.+||+. +++.+..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g---------~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~ 235 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG---------YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAE 235 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS---------SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC---------CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEE
Confidence 44556677778999999999999988776543 346789999999999999999999999995 7777777
Q ss_pred eecccCCCeEEEEEc----cCCCEEEEEEC-CCeEEEEeCCCCceEEEeecc-----------ccceeEEEEcCCCCEEE
Q psy8448 188 LEKAHSLGVTCIQFS----RDNSQILTASF-DTYVRIHGLKSGKMLKEFRGH-----------SSFVNDITFTADGHSVL 251 (482)
Q Consensus 188 ~~~~~~~~v~~i~~~----~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~-----------~~~i~~l~~~~~~~~l~ 251 (482)
+.. ......++|+ |+|++++++.. ++.|.++|..+.+.+..+... ...+..+..++++..++
T Consensus 236 i~~--G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~v 313 (567)
T 1qks_A 236 IKI--GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI 313 (567)
T ss_dssp EEC--CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEE
T ss_pred Eec--CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEE
Confidence 742 3346899999 69998887665 489999999999988776521 12577888888766554
Q ss_pred -EEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecC-Cc-ccCcC
Q psy8448 252 -SASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSS-GK-REGGD 327 (482)
Q Consensus 252 -~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~-~~-~~~~~ 327 (482)
....+|.|.++|....+....... ........+.|+|++..+++++..++.|.++|. +++.+..+.. .. .|.+.
T Consensus 314 v~~~~~g~v~~vd~~~~~~~~v~~i--~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~ 391 (567)
T 1qks_A 314 VNVKETGKILLVDYTDLNNLKTTEI--SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGR 391 (567)
T ss_dssp EEETTTTEEEEEETTCSSEEEEEEE--ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTT
T ss_pred EEecCCCeEEEEecCCCccceeeee--eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcc
Confidence 445679999999987653332211 223456688999999545555667899999999 5666666654 22 12221
Q ss_pred EEEEEEcCCCCEEE-EEe-CCcEEEEEeehh
Q psy8448 328 FLCCTTSPRGEWIY-CVG-EDMVLVVRLIQQ 356 (482)
Q Consensus 328 v~~~~~~~~g~~l~-~~~-~dg~i~iw~~~~ 356 (482)
-..+ ++|++..+. ++. .++.|.+++...
T Consensus 392 g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 392 GANF-VHPTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp CEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred ceee-ECCCCCcEEEeCCCCCCeEEEecCCC
Confidence 2222 688855555 443 468999887653
No 192
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.70 E-value=4.5e-13 Score=120.40 Aligned_cols=237 Identities=13% Similarity=0.060 Sum_probs=169.2
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy8448 99 SKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWK 178 (482)
Q Consensus 99 h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd 178 (482)
....+.+++++++|+++++...++.|.+||.. ++... +... .+...+.++++.++++.+++...++.|..+|
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~------~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d 89 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVP------TPDAKVMCLIVSSLGDIWFTENGANKIGKLS 89 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECS------STTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECC------CCCCcceeEEECCCCCEEEEecCCCeEEEEC
Confidence 45678999999999988887778999999987 55432 2211 1135688999999998777766678899999
Q ss_pred cCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEE-EeeccccceeEEEEcCCCCEEEEEeCCC
Q psy8448 179 IATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLK-EFRGHSSFVNDITFTADGHSVLSASSDG 257 (482)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~l~~~~~~~~l~~~~~dg 257 (482)
.. ++............+..+++.+++..+++...++.|..+|.. ++... .+......+.+++++++++..++...++
T Consensus 90 ~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~ 167 (300)
T 2qc5_A 90 KK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNN 167 (300)
T ss_dssp TT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTT
T ss_pred CC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCC
Confidence 87 554322212234678999999999877776668899999987 55442 2233456789999999999666666678
Q ss_pred cEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCC
Q psy8448 258 TVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRG 337 (482)
Q Consensus 258 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g 337 (482)
.|..||. +++... +.. ......+..+++.+++ .++++....+.|..++..+......... ....+.+++++++|
T Consensus 168 ~i~~~~~-~g~~~~-~~~-~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~~g~~~~~~~~~--~~~~~~~i~~d~~g 241 (300)
T 2qc5_A 168 SIGRITN-TGKLEE-YPL-PTNAAAPVGITSGNDG-ALWFVEIMGNKIGRITTTGEISEYDIPT--PNARPHAITAGKNS 241 (300)
T ss_dssp EEEEECT-TCCEEE-EEC-SSTTCCEEEEEECTTS-SEEEEETTTTEEEEECTTCCEEEEECSS--TTCCEEEEEECSTT
T ss_pred eEEEECC-CCcEEE-eeC-CCCCCCcceEEECCCC-CEEEEccCCCEEEEEcCCCcEEEEECCC--CCCCceEEEECCCC
Confidence 8999998 555433 221 1334567899999987 7777776778899999966544432211 24567899999999
Q ss_pred CEEEEEeCCcEEEE
Q psy8448 338 EWIYCVGEDMVLVV 351 (482)
Q Consensus 338 ~~l~~~~~dg~i~i 351 (482)
+..++...++.|..
T Consensus 242 ~l~v~~~~~~~i~~ 255 (300)
T 2qc5_A 242 EIWFTEWGANQIGR 255 (300)
T ss_dssp CEEEEETTTTEEEE
T ss_pred CEEEeccCCCeEEE
Confidence 87666666788883
No 193
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.69 E-value=2.1e-14 Score=130.77 Aligned_cols=234 Identities=9% Similarity=-0.003 Sum_probs=163.4
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q psy8448 101 SHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIA 180 (482)
Q Consensus 101 ~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~ 180 (482)
.....+.+. +++++++...++.|.+||..+++.+..+.. ......++++++++.+++...++.|.+||..
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~---------~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~ 113 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG---------FTSPRYIHFLSDEKAYVTQIWDYRIFIINPK 113 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC---------CSSEEEEEEEETTEEEEEEBSCSEEEEEETT
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC---------CCCCcEEEEeCCCeEEEEECCCCeEEEEECC
Confidence 446777774 455556666689999999999998776632 2468899999988544444488999999999
Q ss_pred CCeEeEEeecccC----CCeEEEEEccCCCEEEEEE--CCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEe
Q psy8448 181 TGQCLRKLEKAHS----LGVTCIQFSRDNSQILTAS--FDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSAS 254 (482)
Q Consensus 181 ~~~~~~~~~~~~~----~~v~~i~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~ 254 (482)
+++....+..+.. .....+++ ++..++++. .++.|.++|+++++.+..+.. ......+.++|+|++++++.
T Consensus 114 t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~ 190 (328)
T 3dsm_A 114 TYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI-GIQPTSLVMDKYNKMWTITD 190 (328)
T ss_dssp TTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC-SSCBCCCEECTTSEEEEEBC
T ss_pred CCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-CCCccceEEcCCCCEEEEEC
Confidence 9988777643221 14556777 345566655 488999999999998887764 33467899999998776665
Q ss_pred CC----------CcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CcEEEEecCCcc
Q psy8448 255 SD----------GTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSGKR 323 (482)
Q Consensus 255 ~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~ 323 (482)
.+ +.|.++|..+++....+.. ........++++|++ ..++++.. .|.+||.. ++... ......
T Consensus 191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~--~~g~~p~~la~~~d~-~~lyv~~~--~v~~~d~~t~~~~~-~~~~~~ 264 (328)
T 3dsm_A 191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKF--KLGDWPSEVQLNGTR-DTLYWINN--DIWRMPVEADRVPV-RPFLEF 264 (328)
T ss_dssp CBCTTCSSCBCCCEEEEEETTTTEEEEEEEC--CTTCCCEEEEECTTS-CEEEEESS--SEEEEETTCSSCCS-SCSBCC
T ss_pred CCccCCccccCCceEEEEECCCCeEEEEEec--CCCCCceeEEEecCC-CEEEEEcc--EEEEEECCCCceee-eeeecC
Confidence 54 7899999999887766642 112367899999988 56665554 89999984 44321 111000
Q ss_pred cCcCEEEEEEcCC-CCEEEEE----eCCcEEEEEe
Q psy8448 324 EGGDFLCCTTSPR-GEWIYCV----GEDMVLVVRL 353 (482)
Q Consensus 324 ~~~~v~~~~~~~~-g~~l~~~----~~dg~i~iw~ 353 (482)
.......++++|+ +...++. ..++.|.+|+
T Consensus 265 ~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d 299 (328)
T 3dsm_A 265 RDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS 299 (328)
T ss_dssp CSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred CCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence 1356789999995 5555555 5688999554
No 194
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.69 E-value=1.1e-14 Score=147.75 Aligned_cols=294 Identities=12% Similarity=0.080 Sum_probs=187.9
Q ss_pred hHHHHHHHhHhhhhhccCCCCCCceeeccCCc-----ccccccccc----ccccccc--eeeecCCCCcEEEEEEcCCCC
Q psy8448 45 SRLLALLGQALKWQQHQGLLPPGTTIDLFRGK-----AAMKDQEEE----KYPTQLS--KQIKFGSKSHVECARFSPDGQ 113 (482)
Q Consensus 45 ~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~~~~~~~~----~~~~~~~--~~~~~~h~~~v~~~~~s~~~~ 113 (482)
.++...+...++........|+|..+.+.... ..+|..... ..+..+. ..+..+|...+..++|||||+
T Consensus 96 ~~l~~~~~~~~~~~~~~~p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~ 175 (741)
T 1yr2_A 96 AALEKRMKALIDYERFGLPQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGR 175 (741)
T ss_dssp HHHHHHHHHHSCCCEECCCEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSS
T ss_pred HHHHHHHHHhhcccccCCCEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCC
Confidence 45555555555565566666888877665422 333443321 1111110 012334555789999999999
Q ss_pred EEEEEeCC-----CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCc--------------E
Q psy8448 114 YLITGSVD-----GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGK--------------V 174 (482)
Q Consensus 114 ~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~--------------i 174 (482)
+||.+..+ ..|++||+.+++..... .. ...+..++|+|| +.|+.++.++. |
T Consensus 176 ~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~--------~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v 245 (741)
T 1yr2_A 176 LLAYSVQDGGSDWRTVKFVGVADGKPLADE-LK--------WVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTV 245 (741)
T ss_dssp EEEEEEEETTCSEEEEEEEETTTCCEEEEE-EE--------EEESCCCEESTT-SEEEEEECCCC--------CCCCCEE
T ss_pred EEEEEEcCCCCceEEEEEEECCCCCCCCcc-CC--------CceeccEEEECC-CEEEEEEecCcccccccccCCCCCEE
Confidence 99887643 46999999998865321 11 122357899999 99998887654 8
Q ss_pred EEEEcCCCeE--eEEee-cccCCCeEEEEEccCCCEEEEEECCC-----eEEEEeCCCC--ceEEEeeccccceeEEEEc
Q psy8448 175 KIWKIATGQC--LRKLE-KAHSLGVTCIQFSRDNSQILTASFDT-----YVRIHGLKSG--KMLKEFRGHSSFVNDITFT 244 (482)
Q Consensus 175 ~iwd~~~~~~--~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~dg-----~i~i~d~~~~--~~~~~~~~~~~~i~~l~~~ 244 (482)
++|++.++.. ...+. ..+...+..+.|+|||++|+..+.++ .|++||+.++ +....+..+...+.... +
T Consensus 246 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~ 324 (741)
T 1yr2_A 246 WLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-D 324 (741)
T ss_dssp EEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-E
T ss_pred EEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-e
Confidence 8999877652 22221 12233588999999999988777544 8999999877 31455555555555543 4
Q ss_pred CCCCEEEEEeCC----CcEEEEECCCCc-eeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc--CCcEEEE
Q psy8448 245 ADGHSVLSASSD----GTVKMWNLKTTE-CTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM--QGQIVRS 317 (482)
Q Consensus 245 ~~~~~l~~~~~d----g~i~i~d~~~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~ 317 (482)
|+++.|+..+.+ +.|.+||+.++. ....+.. .+...+..+.+. +..++++...++..++|.+ +++....
T Consensus 325 ~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~--~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~ 400 (741)
T 1yr2_A 325 GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP--ESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKPAGA 400 (741)
T ss_dssp EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC--CCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCEEEE
T ss_pred ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec--CCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCceee
Confidence 889988887764 459999998752 2233321 344456677777 3368888888888777655 5776666
Q ss_pred ecCCcccCcCEEEEEEcCCCCEEEEE----eCCcEEEEEeeh
Q psy8448 318 LSSGKREGGDFLCCTTSPRGEWIYCV----GEDMVLVVRLIQ 355 (482)
Q Consensus 318 ~~~~~~~~~~v~~~~~~~~g~~l~~~----~~dg~i~iw~~~ 355 (482)
+.... ...+..++++|+++.|+.. ...+.++.|++.
T Consensus 401 l~~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~ 440 (741)
T 1yr2_A 401 VSLPG--IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPA 440 (741)
T ss_dssp CBCSS--SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETT
T ss_pred ccCCC--CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECC
Confidence 65321 4568889999998866633 234788888875
No 195
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.69 E-value=9.1e-15 Score=129.44 Aligned_cols=192 Identities=9% Similarity=-0.001 Sum_probs=133.3
Q ss_pred cEEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEE
Q psy8448 152 AVMSLAYSRDSEMLA-SGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKE 230 (482)
Q Consensus 152 ~i~~l~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 230 (482)
...+++++++++.++ +.+.++.|.+||..+.... .+.......+.++++.+++..+++.. ++.|.+||....... .
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT-VLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-V 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----E-ECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-E
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccc-eEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-e
Confidence 678999999998666 4467889999997654432 22123335678899999988555544 889999998765433 3
Q ss_pred ee-ccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEE
Q psy8448 231 FR-GHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMN 309 (482)
Q Consensus 231 ~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d 309 (482)
+. .....+.+++++++++.+++...++.|.+|+..+........ .....+..+++.+++ .++++...++.|.+|+
T Consensus 102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~---~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~ 177 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF---TGLNDPDGVAVDNSG-NVYVTDTDNNRVVKLE 177 (270)
T ss_dssp CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCC---CSCCSCCCEEECTTC-CEEEEEGGGTEEEEEC
T ss_pred eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeecc---ccCCCceeEEEeCCC-CEEEEECCCCEEEEEe
Confidence 32 233568999999999977777778899999866544322211 223457889999988 6777777788999999
Q ss_pred cCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEE
Q psy8448 310 MQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVR 352 (482)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw 352 (482)
..+......... ....+..++++++|..+++...++.|.+|
T Consensus 178 ~~~~~~~~~~~~--~~~~p~~i~~d~~g~l~v~~~~~~~v~~~ 218 (270)
T 1rwi_B 178 AESNNQVVLPFT--DITAPWGIAVDEAGTVYVTEHNTNQVVKL 218 (270)
T ss_dssp TTTCCEEECCCS--SCCSEEEEEECTTCCEEEEETTTSCEEEE
T ss_pred cCCCceEeeccc--CCCCceEEEECCCCCEEEEECCCCcEEEE
Confidence 966544433222 13567899999999777777778888833
No 196
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.68 E-value=3.1e-14 Score=125.80 Aligned_cols=181 Identities=15% Similarity=0.183 Sum_probs=145.4
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeecc-cccee
Q psy8448 161 DSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGH-SSFVN 239 (482)
Q Consensus 161 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~i~ 239 (482)
.++.|++++.++.|.+||.++++.+.++.......+.++++.|+|+.++ +.++.|..||. +++.+..+..+ ...+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 3578999999999999999999999998432224688999999999888 45788999998 89999988865 34788
Q ss_pred EEEEcCCCCEEEEEeC-CCcEEEEECCCCceeeeeeccC---CCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEE
Q psy8448 240 DITFTADGHSVLSASS-DGTVKMWNLKTTECTSTFKSLG---ASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIV 315 (482)
Q Consensus 240 ~l~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 315 (482)
++.+.++|+.+++.+. ++.|..+|. +++.+..+.... .+......++..+++ .++++...++.|..||.+|+.+
T Consensus 81 ~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G-~~lv~~~~~~~v~~~d~~G~~~ 158 (276)
T 3no2_A 81 TARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKG-NYLVPLFATSEVREIAPNGQLL 158 (276)
T ss_dssp EEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTS-CEEEEETTTTEEEEECTTSCEE
T ss_pred ccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCC-CEEEEecCCCEEEEECCCCCEE
Confidence 9999999999999887 778888885 677766664221 122345566788888 7899999999999999999998
Q ss_pred EEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448 316 RSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLV 350 (482)
Q Consensus 316 ~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~ 350 (482)
..+... ....++...++|+.+++++.++.|.
T Consensus 159 w~~~~~----~~~~~~~~~~~g~~~v~~~~~~~v~ 189 (276)
T 3no2_A 159 NSVKLS----GTPFSSAFLDNGDCLVACGDAHCFV 189 (276)
T ss_dssp EEEECS----SCCCEEEECTTSCEEEECBTTSEEE
T ss_pred EEEECC----CCccceeEcCCCCEEEEeCCCCeEE
Confidence 888763 2345678889999999999888888
No 197
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.64 E-value=4.8e-13 Score=129.69 Aligned_cols=236 Identities=14% Similarity=0.133 Sum_probs=163.5
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEecC--CCceeeccccccccccccccccEEEEEEc----CCCCEEEEEe-CCCc
Q psy8448 101 SHVECARFSPDGQYLITGSVDGFIEVWNFT--TGKIRKDLKYQAQDNFMLMEEAVMSLAYS----RDSEMLASGS-QSGK 173 (482)
Q Consensus 101 ~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~h~~~i~~l~~~----~~~~~l~~~~-~dg~ 173 (482)
..+..+.|+|||+++++++.|+.|.+||+. +++....+... .....++|+ |+|+++++++ .+++
T Consensus 197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G---------~~P~~ia~s~~~~pDGk~l~v~n~~~~~ 267 (567)
T 1qks_A 197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG---------SEARSIETSKMEGWEDKYAIAGAYWPPQ 267 (567)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC---------SEEEEEEECCSTTCTTTEEEEEEEETTE
T ss_pred CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC---------CCCceeEEccccCCCCCEEEEEEccCCe
Confidence 356799999999999999999999999996 77666555432 346799999 6999888876 4589
Q ss_pred EEEEEcCCCeEeEEeecc---------c---------------------------------------------CCCeEEE
Q psy8448 174 VKIWKIATGQCLRKLEKA---------H---------------------------------------------SLGVTCI 199 (482)
Q Consensus 174 i~iwd~~~~~~~~~~~~~---------~---------------------------------------------~~~v~~i 199 (482)
|.++|..+.+.+..+... | ......+
T Consensus 268 v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~ 347 (567)
T 1qks_A 268 YVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDG 347 (567)
T ss_dssp EEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEE
T ss_pred EEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCc
Confidence 999998887776654211 0 0112356
Q ss_pred EEccCCCEEEEEE-CCCeEEEEeCCCCceEEEeec-----cccceeEEE-EcCCCCEEE-EEe-CCCcEEEEECCC----
Q psy8448 200 QFSRDNSQILTAS-FDTYVRIHGLKSGKMLKEFRG-----HSSFVNDIT-FTADGHSVL-SAS-SDGTVKMWNLKT---- 266 (482)
Q Consensus 200 ~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~-----~~~~i~~l~-~~~~~~~l~-~~~-~dg~i~i~d~~~---- 266 (482)
.|+|++++++++. .++.|.++|+.+++.+..+.. |.+ .... ++|++..+. ++. .++.|.++|..+
T Consensus 348 ~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg--~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~ 425 (567)
T 1qks_A 348 GLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPG--RGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHP 425 (567)
T ss_dssp EECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCT--TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCT
T ss_pred eECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCc--cceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCc
Confidence 7999999887765 578999999999987766643 322 1222 578755554 443 468999999987
Q ss_pred ---CceeeeeeccCCCccceeEEEEcCCCCCEEEEEeC-------CCeEEEEEcC-C-----c-EEEEecC-----Cccc
Q psy8448 267 ---TECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK-------TNTVVIMNMQ-G-----Q-IVRSLSS-----GKRE 324 (482)
Q Consensus 267 ---~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-------d~~i~i~d~~-~-----~-~~~~~~~-----~~~~ 324 (482)
.+.+.++.. ....-..+..+|++ ..+.+... .++|.++|+. . . ....+.. ....
T Consensus 426 ~~~~kvv~~i~~---~g~g~~~i~~~p~~-~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~ 501 (567)
T 1qks_A 426 DNAWKILDSFPA---LGGGSLFIKTHPNS-QYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEG 501 (567)
T ss_dssp TTBTSEEEEEEC---SCSCCCCEECCTTC-SEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSS
T ss_pred cccCEEEEEEec---CCCCCEEEEeCCCC-CeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCC
Confidence 556666652 22333457789998 56666552 3599999984 3 1 1133321 1111
Q ss_pred CcCEEEEEEcCCCCEEEEEe-----CCcEEEE
Q psy8448 325 GGDFLCCTTSPRGEWIYCVG-----EDMVLVV 351 (482)
Q Consensus 325 ~~~v~~~~~~~~g~~l~~~~-----~dg~i~i 351 (482)
...+..+.|+|+|+++..+. .++.|.|
T Consensus 502 ~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v 533 (567)
T 1qks_A 502 QPRVVQGEFNKDGTEVWFSVWNGKDQESALVV 533 (567)
T ss_dssp CCEEEEEEECTTSSEEEEEEECCTTSCCEEEE
T ss_pred CcceEeeeECCCCCEEEEEeecCCCCCCcEEE
Confidence 45788999999999988764 3788993
No 198
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.64 E-value=4.2e-14 Score=143.58 Aligned_cols=232 Identities=16% Similarity=0.102 Sum_probs=146.6
Q ss_pred cCCCCEEEEEeCCC---eEEEEe--cC---CCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC-----CcEE
Q psy8448 109 SPDGQYLITGSVDG---FIEVWN--FT---TGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS-----GKVK 175 (482)
Q Consensus 109 s~~~~~l~s~~~dg---~v~iwd--~~---~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d-----g~i~ 175 (482)
+|+|++++....++ .-.+|- .. .++....+.... ...+|...+..++|||||++|+.++.+ ..|+
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~--l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~ 192 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNT--WAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVK 192 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGG--CC----EEEEEEEECTTSSEEEEEEEETTCSEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHH--hccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEE
Confidence 38999888765433 244454 33 333222111111 111233468899999999999987654 3699
Q ss_pred EEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCe--------------EEEEeCCCCce--EEEee--ccccc
Q psy8448 176 IWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTY--------------VRIHGLKSGKM--LKEFR--GHSSF 237 (482)
Q Consensus 176 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~--------------i~i~d~~~~~~--~~~~~--~~~~~ 237 (482)
+||+.+++.+... .+...+..++|+|| +.|+.+..++. |++|++.+++. ...+. .+...
T Consensus 193 v~dl~tg~~~~~~--~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~ 269 (741)
T 1yr2_A 193 FVGVADGKPLADE--LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKR 269 (741)
T ss_dssp EEETTTCCEEEEE--EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTC
T ss_pred EEECCCCCCCCcc--CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeE
Confidence 9999999876542 12222357899999 99998876654 89999987752 22232 23345
Q ss_pred eeEEEEcCCCCEEEEEeCCC-----cEEEEECCCC--ceeeeeeccCCCccceeEEEEcCCCCCEEEEEeC----CCeEE
Q psy8448 238 VNDITFTADGHSVLSASSDG-----TVKMWNLKTT--ECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK----TNTVV 306 (482)
Q Consensus 238 i~~l~~~~~~~~l~~~~~dg-----~i~i~d~~~~--~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~----d~~i~ 306 (482)
+..+.|+|||++|+..+.++ .|.+||+.++ ++...+. .+...+... ++|++ ..|+..+. .+.|.
T Consensus 270 ~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~---~~~~~~~~~-~~~dg-~~l~~~s~~~~~~~~l~ 344 (741)
T 1yr2_A 270 GHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI---PDLKAQWDF-VDGVG-DQLWFVSGDGAPLKKIV 344 (741)
T ss_dssp EEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE---CSSSSCEEE-EEEET-TEEEEEECTTCTTCEEE
T ss_pred EEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec---CCCCceEEE-EeccC-CEEEEEECCCCCCCEEE
Confidence 88999999999988877543 7999999876 3133333 233333444 34787 45555444 34599
Q ss_pred EEEcCC--cEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448 307 IMNMQG--QIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRL 353 (482)
Q Consensus 307 i~d~~~--~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~ 353 (482)
+||+.+ .....+..+. ...+..++++ ++.++++...|+..+||.
T Consensus 345 ~~d~~~~~~~~~~l~~~~--~~~l~~~~~~-~~~lv~~~~~dg~~~l~~ 390 (741)
T 1yr2_A 345 RVDLSGSTPRFDTVVPES--KDNLESVGIA-GNRLFASYIHDAKSQVLA 390 (741)
T ss_dssp EEECSSSSCEEEEEECCC--SSEEEEEEEE-BTEEEEEEEETTEEEEEE
T ss_pred EEeCCCCccccEEEecCC--CCeEEEEEEE-CCEEEEEEEECCEEEEEE
Confidence 999854 3444444332 3446677887 667788889999998773
No 199
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.64 E-value=6.6e-12 Score=112.65 Aligned_cols=234 Identities=12% Similarity=0.053 Sum_probs=165.8
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy8448 99 SKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWK 178 (482)
Q Consensus 99 h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd 178 (482)
+...+.+++++++|.++++...++.|..|+.. ++. ..+... .....+.++++.++++++++...++.|..||
T Consensus 55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d 126 (299)
T 2z2n_A 55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLP------NPDSAPYGITEGPNGDIWFTEMNGNRIGRIT 126 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECS------STTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCC------CcCCCceeeEECCCCCEEEEecCCceEEEEC
Confidence 45679999999999988887778899999976 432 222211 1135688999999998777777788999999
Q ss_pred cCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEE-eeccccceeEEEEcCCCCEEEEEeCCC
Q psy8448 179 IATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKE-FRGHSSFVNDITFTADGHSVLSASSDG 257 (482)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~l~~~~~~~~l~~~~~dg 257 (482)
. +++............+..+++.+++...++...++.|..||. +++.... .......+.+++++++++++++...++
T Consensus 127 ~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~ 204 (299)
T 2z2n_A 127 D-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGN 204 (299)
T ss_dssp T-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTT
T ss_pred C-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCc
Confidence 8 555443322234556899999999987776666789999998 6665432 233445688999999999777666678
Q ss_pred cEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCC
Q psy8448 258 TVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRG 337 (482)
Q Consensus 258 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g 337 (482)
.|.+||. +++... +. .......+.++++.+++ .++++...++.|..||.++. +..+... .....+.++++ ++|
T Consensus 205 ~i~~~~~-~g~~~~-~~-~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~~g~-~~~~~~~-~~~~~~~~i~~-~~g 277 (299)
T 2z2n_A 205 KIGRITT-SGEITE-FK-IPTPNARPHAITAGAGI-DLWFTEWGANKIGRLTSNNI-IEEYPIQ-IKSAEPHGICF-DGE 277 (299)
T ss_dssp EEEEECT-TCCEEE-EE-CSSTTCCEEEEEECSTT-CEEEEETTTTEEEEEETTTE-EEEEECS-SSSCCEEEEEE-CSS
T ss_pred eEEEECC-CCcEEE-EE-CCCCCCCceeEEECCCC-CEEEeccCCceEEEECCCCc-eEEEeCC-CCCCccceEEe-cCC
Confidence 9999999 665332 32 11344578899999998 66666667889999999654 3333221 12456889999 888
Q ss_pred CEEEEEeCCcEEE
Q psy8448 338 EWIYCVGEDMVLV 350 (482)
Q Consensus 338 ~~l~~~~~dg~i~ 350 (482)
.+.++.. .+.+.
T Consensus 278 ~l~v~~~-~~~l~ 289 (299)
T 2z2n_A 278 TIWFAME-CDKIG 289 (299)
T ss_dssp CEEEEET-TTEEE
T ss_pred CEEEEec-CCcEE
Confidence 8776655 55666
No 200
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.62 E-value=6.3e-13 Score=120.33 Aligned_cols=242 Identities=13% Similarity=0.133 Sum_probs=164.0
Q ss_pred CCcEEEEEEcCCCCEEEE-------EeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCC-CCEEEEEeCC
Q psy8448 100 KSHVECARFSPDGQYLIT-------GSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRD-SEMLASGSQS 171 (482)
Q Consensus 100 ~~~v~~~~~s~~~~~l~s-------~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~-~~~l~~~~~d 171 (482)
-....+++|++++.++++ +..++.|.+||..+++...... . ...++...+.+++++++ ++++++ +..
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~---~~~~~~~~~~~i~~~~~~g~l~v~-~~~ 91 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK-P---EVNGYGGIPAGCQCDRDANQLFVA-DMR 91 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC-C---EETTEECCEEEEEECSSSSEEEEE-ETT
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe-c---ccCCCCCCCceEEEecCCCcEEEE-ECC
Confidence 345689999999988887 5678899999988877542211 0 01113457899999999 664444 444
Q ss_pred CcEEEEEcCCCeEeEE-eec---ccCCCeEEEEEccCCCEEEEEECC---------------CeEEEEeCCCCceEEEee
Q psy8448 172 GKVKIWKIATGQCLRK-LEK---AHSLGVTCIQFSRDNSQILTASFD---------------TYVRIHGLKSGKMLKEFR 232 (482)
Q Consensus 172 g~i~iwd~~~~~~~~~-~~~---~~~~~v~~i~~~~~~~~l~~~~~d---------------g~i~i~d~~~~~~~~~~~ 232 (482)
+.|.+||.. ++.... ... .....+.+++++++|...++...+ +.|..+|.. ++... +.
T Consensus 92 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~~ 168 (314)
T 1pjx_A 92 LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-VD 168 (314)
T ss_dssp TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-EE
T ss_pred CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE-ec
Confidence 579999987 664332 211 112358899999999877766544 578888875 55433 33
Q ss_pred ccccceeEEEEc----CCCCEEEEE-eCCCcEEEEECC-CCcee--eeeeccCCCc-cceeEEEEcCCCCCEEEEEeCCC
Q psy8448 233 GHSSFVNDITFT----ADGHSVLSA-SSDGTVKMWNLK-TTECT--STFKSLGASD-IAVNSIHLLPKNTEHFVVCNKTN 303 (482)
Q Consensus 233 ~~~~~i~~l~~~----~~~~~l~~~-~~dg~i~i~d~~-~~~~~--~~~~~~~~~~-~~v~~i~~~~~~~~~l~~~~~d~ 303 (482)
.+......++++ |+++.++++ ..++.|.+||+. +++.. ..+.....+. .....++++++| .++++...++
T Consensus 169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G-~l~v~~~~~~ 247 (314)
T 1pjx_A 169 TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN-NLLVANWGSS 247 (314)
T ss_dssp EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC-CEEEEEETTT
T ss_pred cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCC-CEEEEEcCCC
Confidence 334456889999 999766555 467899999986 44321 1222222332 557889999998 7888877889
Q ss_pred eEEEEEcC-CcEEEEecCCcccCcCEEEEEEcCCCCEEEEE-eCCcEEEEEe
Q psy8448 304 TVVIMNMQ-GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCV-GEDMVLVVRL 353 (482)
Q Consensus 304 ~i~i~d~~-~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~-~~dg~i~iw~ 353 (482)
.|.+||.. ++.+..+..+ ...+.+++++|+|+.|+++ ..++.|..++
T Consensus 248 ~i~~~d~~~g~~~~~~~~~---~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 248 HIEVFGPDGGQPKMRIRCP---FEKPSNLHFKPQTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp EEEEECTTCBSCSEEEECS---SSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEEEcCCCCcEeEEEeCC---CCCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence 99999996 6665555433 4678999999999966554 4567888444
No 201
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.61 E-value=3.1e-12 Score=117.96 Aligned_cols=221 Identities=10% Similarity=0.023 Sum_probs=142.4
Q ss_pred EcCCCCEEEEEeC--CC---eEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe----------CCC
Q psy8448 108 FSPDGQYLITGSV--DG---FIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS----------QSG 172 (482)
Q Consensus 108 ~s~~~~~l~s~~~--dg---~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~----------~dg 172 (482)
..|+++++.+... .. .|.++|..+++.+..+... ..+ .++++||+++++++. .++
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g--------~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~ 97 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG--------FLP--NPVAAHSGSEFALASTSFSRIAKGKRTD 97 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCC--------CCC--CeEECCCCCEEEEEeccccccccCCCCC
Confidence 3466766666543 22 8899999999887665543 123 899999999999886 367
Q ss_pred cEEEEEcCCCeEeEEeecc-c-----CCCeEEEEEccCCCEEEEEEC--CCeEEEEeCCCCceEEE-eeccccceeEEEE
Q psy8448 173 KVKIWKIATGQCLRKLEKA-H-----SLGVTCIQFSRDNSQILTASF--DTYVRIHGLKSGKMLKE-FRGHSSFVNDITF 243 (482)
Q Consensus 173 ~i~iwd~~~~~~~~~~~~~-~-----~~~v~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~-~~~~~~~i~~l~~ 243 (482)
.|.+||..+.+.+..+..+ . ......++|+|+|++|+++.. ++.|.++| .+++.+.. +.. .. ++.+
T Consensus 98 ~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-~~---~~~~ 172 (373)
T 2mad_H 98 YVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-PT---CYHI 172 (373)
T ss_pred eEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-Cc---eEEE
Confidence 8999999988887776432 0 123458999999999998874 47899999 99988877 542 22 2444
Q ss_pred cCCC-CEEEEEeCCCcEEEEECCCCceeeeeec---cCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcE---EE
Q psy8448 244 TADG-HSVLSASSDGTVKMWNLKTTECTSTFKS---LGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQI---VR 316 (482)
Q Consensus 244 ~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~---~~ 316 (482)
.|++ +.+++.+.||.+.++|. +++....... ......-.....+.+++..++++. ..+.+.+.|+.+.. +.
T Consensus 173 ~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~ 250 (373)
T 2mad_H 173 HPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKA 250 (373)
T ss_pred EeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEee
Confidence 5554 45667778999999999 7776533220 001111123345666664444444 67899999985332 22
Q ss_pred EecCCc-------ccCcCEEEEEEcCCCCEEEEEeC
Q psy8448 317 SLSSGK-------REGGDFLCCTTSPRGEWIYCVGE 345 (482)
Q Consensus 317 ~~~~~~-------~~~~~v~~~~~~~~g~~l~~~~~ 345 (482)
.+.... ........++++|+++.+++...
T Consensus 251 ~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~ 286 (373)
T 2mad_H 251 PIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTS 286 (373)
T ss_pred eeeecCCcccccceecCceEeEEECCCCCEEEEEec
Confidence 221100 00122334678888887777654
No 202
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.60 E-value=4.6e-12 Score=113.58 Aligned_cols=231 Identities=10% Similarity=0.093 Sum_probs=158.2
Q ss_pred CCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEE
Q psy8448 98 GSKSHVECARFSPD-GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKI 176 (482)
Q Consensus 98 ~h~~~v~~~~~s~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~i 176 (482)
.+..--.+..|+|+ +.++++...++.|+.||..+++.. .+. ....+.+++++++++++++ . ++.|.+
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~---------~~~~~~~i~~~~dG~l~v~-~-~~~l~~ 77 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT---------MDAPVSSVALRQSGGYVAT-I-GTKFCA 77 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE---------CSSCEEEEEEBTTSSEEEE-E-TTEEEE
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe---------CCCceEEEEECCCCCEEEE-E-CCeEEE
Confidence 34445678999995 455666667899999999877642 121 1357899999999995444 4 568999
Q ss_pred EEcCCCeEeEEeecc---cCCCeEEEEEccCCCEEEEEEC-----------CCeEEEEeCCCCceEEEeeccccceeEEE
Q psy8448 177 WKIATGQCLRKLEKA---HSLGVTCIQFSRDNSQILTASF-----------DTYVRIHGLKSGKMLKEFRGHSSFVNDIT 242 (482)
Q Consensus 177 wd~~~~~~~~~~~~~---~~~~v~~i~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~i~~l~ 242 (482)
||..+++........ ....+..++++|+|++.++... .+.|..++.. ++. ..+.........++
T Consensus 78 ~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~-~~~~~~~~~pngi~ 155 (297)
T 3g4e_A 78 LNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHV-KKYFDQVDISNGLD 155 (297)
T ss_dssp EETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCE-EEEEEEESBEEEEE
T ss_pred EECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCE-EEEeeccccccceE
Confidence 999887654332111 1234788999999986665422 2345555543 333 22333445578999
Q ss_pred EcCCCCEEEEE-eCCCcEEEEEC--CCCcee--eeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CcEEE
Q psy8448 243 FTADGHSVLSA-SSDGTVKMWNL--KTTECT--STFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVR 316 (482)
Q Consensus 243 ~~~~~~~l~~~-~~dg~i~i~d~--~~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~ 316 (482)
|+|+++.|+.+ +.++.|.+||+ .++... ..+............+++.++| .++++....+.|..||.. ++.+.
T Consensus 156 ~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G-~lwva~~~~~~v~~~d~~tG~~~~ 234 (297)
T 3g4e_A 156 WSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEG-KLWVACYNGGRVIRLDPVTGKRLQ 234 (297)
T ss_dssp ECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTS-CEEEEEETTTEEEEECTTTCCEEE
T ss_pred EcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCC-CEEEEEcCCCEEEEEcCCCceEEE
Confidence 99999877554 55788999997 455432 2222222334567889999998 788888888999999995 88888
Q ss_pred EecCCcccCcCEEEEEEc-CCCCEEEEEeCC
Q psy8448 317 SLSSGKREGGDFLCCTTS-PRGEWIYCVGED 346 (482)
Q Consensus 317 ~~~~~~~~~~~v~~~~~~-~~g~~l~~~~~d 346 (482)
.+... ...+++++|. |+++.|++.+..
T Consensus 235 ~i~~p---~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 235 TVKLP---VDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp EEECS---SSBEEEEEEESGGGCEEEEEEBC
T ss_pred EEECC---CCCceEEEEeCCCCCEEEEEcCC
Confidence 87654 4578999998 888888766643
No 203
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.60 E-value=5.6e-13 Score=121.17 Aligned_cols=224 Identities=12% Similarity=0.062 Sum_probs=149.5
Q ss_pred EEcCCCCEEEEEeC-----CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe----------CC
Q psy8448 107 RFSPDGQYLITGSV-----DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS----------QS 171 (482)
Q Consensus 107 ~~s~~~~~l~s~~~-----dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~----------~d 171 (482)
...|+++.++.... ++.|.+.|..+++.+..+... ..+ . ++++|++++++++. .+
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG--------~~P-~-va~spDG~~lyVan~~~~r~~~G~~~ 108 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG--------FLP-N-PVVADDGSFIAHASTVFSRIARGERT 108 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC--------SSC-E-EEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECC--------CCC-c-EEECCCCCEEEEEcccccccccCCCC
Confidence 34678888877764 679999999999988877654 233 4 99999999888875 35
Q ss_pred CcEEEEEcCCCeEeEEeeccc------CCCeEEEEEccCCCEEEEEEC--CCeEEEEeCCCCceEEEeeccccceeEEEE
Q psy8448 172 GKVKIWKIATGQCLRKLEKAH------SLGVTCIQFSRDNSQILTASF--DTYVRIHGLKSGKMLKEFRGHSSFVNDITF 243 (482)
Q Consensus 172 g~i~iwd~~~~~~~~~~~~~~------~~~v~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~ 243 (482)
+.|.+||..+.+.+..+..+. ......++|+|||++++++.. ++.|.++|+.+++.+.++..... ...+
T Consensus 109 ~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~ 185 (386)
T 3sjl_D 109 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIF 185 (386)
T ss_dssp EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEE
T ss_pred CEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceee
Confidence 789999999999888874332 124567899999999998874 68999999999999888863221 2233
Q ss_pred cCCCCEEEEEeCCCcEEEEECCC-Cceeeeee-ccCCCccce-eEEEEc-CCCCCEEEEEeCCCeEEEEEcCCcEEEEec
Q psy8448 244 TADGHSVLSASSDGTVKMWNLKT-TECTSTFK-SLGASDIAV-NSIHLL-PKNTEHFVVCNKTNTVVIMNMQGQIVRSLS 319 (482)
Q Consensus 244 ~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~-~~~~~~~~v-~~i~~~-~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 319 (482)
....+.+++.+.||.+.+.++.+ ++...... .......++ ....|. ++| .+++ .+.+|.+++.|..+.......
T Consensus 186 P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG-~~~~-vs~~g~V~v~d~~~~~~~v~~ 263 (386)
T 3sjl_D 186 PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG-RLVW-PTYTGKIHQIDLSSGDAKFLP 263 (386)
T ss_dssp EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT-EEEE-EBTTSEEEEEECTTSSCEECC
T ss_pred cCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCC-cEEE-EeCCCEEEEEECCCCcceeec
Confidence 33456777888899999999876 55422111 111111222 224554 454 4444 566899999999544322221
Q ss_pred CCc----------ccCcCEEEEEEcCCCCEEEEEeC
Q psy8448 320 SGK----------REGGDFLCCTTSPRGEWIYCVGE 345 (482)
Q Consensus 320 ~~~----------~~~~~v~~~~~~~~g~~l~~~~~ 345 (482)
... ........++++++++.++....
T Consensus 264 ~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~ 299 (386)
T 3sjl_D 264 AVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVD 299 (386)
T ss_dssp CEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEE
T ss_pred ceeccccccccccccCCCcceeeECCCCCeEEEEec
Confidence 100 00112234777899998887653
No 204
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.59 E-value=5.9e-14 Score=128.14 Aligned_cols=181 Identities=8% Similarity=0.060 Sum_probs=135.1
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeec---cccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy8448 102 HVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKD---LKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWK 178 (482)
Q Consensus 102 ~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~---~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd 178 (482)
+++.+++++...++++|+.++ +.+|++++.+.... ..... .....+.. |+.++| ++++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~-~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTF-KWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCC-SEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccc-eEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 689999999999999999875 66798764431000 00000 01122456 999999 88999998 889999999
Q ss_pred cCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCc
Q psy8448 179 IATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGT 258 (482)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~ 258 (482)
+.+....... ..+..++.++.+.+. .+++++.||.|.+||+.++.... +...|+|++|+|+| ++.|..||.
T Consensus 113 v~sl~~~~~~-~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~ 183 (388)
T 1xip_A 113 LEELSEFRTV-TSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRS 183 (388)
T ss_dssp SSSTTCEEEE-EECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSC
T ss_pred chhhhccCcc-ceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCc
Confidence 9876654444 466777888877654 38889999999999999887643 45679999999999 788999999
Q ss_pred EEEEECCCCce--eeeeecc------CCCccceeEEEEcCCCCCEEEE
Q psy8448 259 VKMWNLKTTEC--TSTFKSL------GASDIAVNSIHLLPKNTEHFVV 298 (482)
Q Consensus 259 i~i~d~~~~~~--~~~~~~~------~~~~~~v~~i~~~~~~~~~l~~ 298 (482)
+++|+...++. ...+... .++...|.+|.|.+++ .++++
T Consensus 184 i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~-~flv~ 230 (388)
T 1xip_A 184 FQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ-DFLAV 230 (388)
T ss_dssp EEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS-EEEEE
T ss_pred EEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCC-eEEEE
Confidence 99999887775 4444211 1367889999999987 56655
No 205
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.59 E-value=9e-13 Score=119.33 Aligned_cols=193 Identities=11% Similarity=0.095 Sum_probs=129.1
Q ss_pred ccEEEEEEcCCCCEEEE-------EeCCCcEEEEEcCCCeEeEEee---cccCCCeEEEEEccC-CCEEEEEECCCeEEE
Q psy8448 151 EAVMSLAYSRDSEMLAS-------GSQSGKVKIWKIATGQCLRKLE---KAHSLGVTCIQFSRD-NSQILTASFDTYVRI 219 (482)
Q Consensus 151 ~~i~~l~~~~~~~~l~~-------~~~dg~i~iwd~~~~~~~~~~~---~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~i 219 (482)
....+++|+++++.+++ ...++.|.+||..+++...... .++...+..++++++ +. +.+++..+.|.+
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~~~~l~~ 96 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADMRLGLLV 96 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EEEEETTTEEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EEEEECCCCEEE
Confidence 34678999999987777 5678899999988776543221 014456899999998 65 555555558999
Q ss_pred EeCCCCceEEE-eec----cccceeEEEEcCCCCEEEEEeCC---------------CcEEEEECCCCceeeeeeccCCC
Q psy8448 220 HGLKSGKMLKE-FRG----HSSFVNDITFTADGHSVLSASSD---------------GTVKMWNLKTTECTSTFKSLGAS 279 (482)
Q Consensus 220 ~d~~~~~~~~~-~~~----~~~~i~~l~~~~~~~~l~~~~~d---------------g~i~i~d~~~~~~~~~~~~~~~~ 279 (482)
||.+ ++.... ... ....+.+++++++++++++...+ +.|..||.. ++..... ..
T Consensus 97 ~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~----~~ 170 (314)
T 1pjx_A 97 VQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD----TA 170 (314)
T ss_dssp EETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE----EE
T ss_pred EeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec----cC
Confidence 9988 665433 221 12358899999999877766554 567777765 5443322 22
Q ss_pred ccceeEEEEc----CCCCCEEEEEeCCCeEEEEEcC--CcEE--EEecCCcccC-cCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448 280 DIAVNSIHLL----PKNTEHFVVCNKTNTVVIMNMQ--GQIV--RSLSSGKREG-GDFLCCTTSPRGEWIYCVGEDMVLV 350 (482)
Q Consensus 280 ~~~v~~i~~~----~~~~~~l~~~~~d~~i~i~d~~--~~~~--~~~~~~~~~~-~~v~~~~~~~~g~~l~~~~~dg~i~ 350 (482)
......++++ |++..++++...++.|.+|+.. +... ..+.....+. ..+..++++++|+++++...++.|.
T Consensus 171 ~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~ 250 (314)
T 1pjx_A 171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIE 250 (314)
T ss_dssp ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEE
Confidence 2345788999 9874345555678999999974 3311 1111111112 4578899999999888887888888
No 206
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.58 E-value=3.7e-12 Score=119.25 Aligned_cols=239 Identities=10% Similarity=0.012 Sum_probs=164.2
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCC--cEEEEE
Q psy8448 101 SHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSG--KVKIWK 178 (482)
Q Consensus 101 ~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg--~i~iwd 178 (482)
.....|+|+++++++++...++.|++||..++......... .... ++|+|+++.|+++..++ .|.+++
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~---------~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d 200 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF---------KGGK-PAVTKDKQRVYSIGWEGTHTVYVYM 200 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC---------CBCB-CEECTTSSEEEEEBSSTTCEEEEEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC---------CCCc-eeEecCCCcEEEEecCCCceEEEEE
Confidence 46889999999998888777899999999887765433221 1233 89999999999988766 788888
Q ss_pred cCCCeEeEEe---ecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEE----eeccccce-e-EEEEcCC-CC
Q psy8448 179 IATGQCLRKL---EKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKE----FRGHSSFV-N-DITFTAD-GH 248 (482)
Q Consensus 179 ~~~~~~~~~~---~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~i-~-~l~~~~~-~~ 248 (482)
...+.....+ .......+.+++++|++..|+++..++.|+.||..++..... ..++...- . .++|+|+ +.
T Consensus 201 ~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~ 280 (409)
T 3hrp_A 201 KASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSN 280 (409)
T ss_dssp GGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTE
T ss_pred cCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCE
Confidence 7765543332 111445678899999655666677788999999987764322 22222222 3 9999995 55
Q ss_pred EEEEEeCCCcEEEEECCCCceeeeeeccC------------CCccceeEEEEcCCCCCEEEEEe-CCCeEEEEEc-CCcE
Q psy8448 249 SVLSASSDGTVKMWNLKTTECTSTFKSLG------------ASDIAVNSIHLLPKNTEHFVVCN-KTNTVVIMNM-QGQI 314 (482)
Q Consensus 249 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------------~~~~~v~~i~~~~~~~~~l~~~~-~d~~i~i~d~-~~~~ 314 (482)
++++-..++.|+.|+.... ...+.... ..-.....++++|++ .++++-+ .++.|+.|+. ++.
T Consensus 281 lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG-~lyvad~~~~~~I~~~~~~~G~- 356 (409)
T 3hrp_A 281 FYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG-NFYIVDGFKGYCLRKLDILDGY- 356 (409)
T ss_dssp EEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC-CEEEEETTTTCEEEEEETTTTE-
T ss_pred EEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC-CEEEEeCCCCCEEEEEECCCCE-
Confidence 5555566788999997643 22222100 001346889999998 6888877 8899999996 554
Q ss_pred EEEecCCc------------ccCcCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448 315 VRSLSSGK------------REGGDFLCCTTSPRGEWIYCVGEDMVLVVRL 353 (482)
Q Consensus 315 ~~~~~~~~------------~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~ 353 (482)
+..+.... ........++++++|.++++-..++.|+.+.
T Consensus 357 v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~ 407 (409)
T 3hrp_A 357 VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYA 407 (409)
T ss_dssp EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEE
T ss_pred EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEE
Confidence 44443320 0124578999999988888888888988443
No 207
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.57 E-value=1.8e-12 Score=121.33 Aligned_cols=198 Identities=13% Similarity=0.114 Sum_probs=138.9
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCC--eEEEEeCCCCceE
Q psy8448 151 EAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDT--YVRIHGLKSGKML 228 (482)
Q Consensus 151 ~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~ 228 (482)
.....|+|+++++++++...++.|++||..++...... .... ... ++|+++++.|+++..++ .|.+++...+...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~-~~~~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVH-PGFK-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEE-ETCC-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEee-ccCC-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence 46889999999997777777789999999877766554 2322 233 99999999999888766 8999998766544
Q ss_pred EEe----eccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeec--cCCCcc--ceeEEEEcCCCCCEEEEEe
Q psy8448 229 KEF----RGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKS--LGASDI--AVNSIHLLPKNTEHFVVCN 300 (482)
Q Consensus 229 ~~~----~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~--~v~~i~~~~~~~~~l~~~~ 300 (482)
..+ ......+.+++++|++..|+++..++.|..||..++.... +.. ..+... +...++|+|++..++++..
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~-~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTL-IKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEE-EEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEE-EecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 443 2245667899999955556667778899999998775322 210 001111 1239999996547777777
Q ss_pred CCCeEEEEEcCCcEEEEecCC-c----------ccCcCEEEEEEcCCCCEEEEEe-CCcEEEEE
Q psy8448 301 KTNTVVIMNMQGQIVRSLSSG-K----------REGGDFLCCTTSPRGEWIYCVG-EDMVLVVR 352 (482)
Q Consensus 301 ~d~~i~i~d~~~~~~~~~~~~-~----------~~~~~v~~~~~~~~g~~l~~~~-~dg~i~iw 352 (482)
..+.|+.|+.++......... . ........++++|+|+++++-. .++.|+.|
T Consensus 287 ~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~ 350 (409)
T 3hrp_A 287 NLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKL 350 (409)
T ss_dssp TTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEE
T ss_pred CCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEE
Confidence 889999999977633322211 0 0023478899999999777777 78899943
No 208
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.57 E-value=2.2e-11 Score=110.68 Aligned_cols=227 Identities=13% Similarity=0.063 Sum_probs=154.7
Q ss_pred CcEEEEEEcCCC-CEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy8448 101 SHVECARFSPDG-QYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKI 179 (482)
Q Consensus 101 ~~v~~~~~s~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~ 179 (482)
.-..+..|+|++ .++++...++.|..||..+++... +.. ...+.+++|+|+++++++. .+ .|.+||.
T Consensus 49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~---------~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~ 116 (326)
T 2ghs_A 49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HAL---------PFMGSALAKISDSKQLIAS-DD-GLFLRDT 116 (326)
T ss_dssp SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EEC---------SSCEEEEEEEETTEEEEEE-TT-EEEEEET
T ss_pred CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EEC---------CCcceEEEEeCCCeEEEEE-CC-CEEEEEC
Confidence 345788999974 455666678899999998775432 111 2468999999999876654 44 4999998
Q ss_pred CCCeEeEEeecc---cCCCeEEEEEccCCCEEEEEEC------CCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEE
Q psy8448 180 ATGQCLRKLEKA---HSLGVTCIQFSRDNSQILTASF------DTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSV 250 (482)
Q Consensus 180 ~~~~~~~~~~~~---~~~~v~~i~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l 250 (482)
.+++........ ....+..++++|+|+++++... .+.|..++ +++.. .+.........++|+|+++.+
T Consensus 117 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~l 193 (326)
T 2ghs_A 117 ATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTG 193 (326)
T ss_dssp TTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEE
T ss_pred CCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEE
Confidence 887754332111 1235889999999986665432 25666676 45433 333334457799999999877
Q ss_pred EEE-eCCCcEEEEECC--CC-cee--eeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCccc
Q psy8448 251 LSA-SSDGTVKMWNLK--TT-ECT--STFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKRE 324 (482)
Q Consensus 251 ~~~-~~dg~i~i~d~~--~~-~~~--~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 324 (482)
+.+ +.++.|.+||+. ++ ... ..+............+++.++| .++++...++.|..|+.+++.+..+...
T Consensus 194 yv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G-~lwva~~~~~~v~~~d~~g~~~~~i~~~--- 269 (326)
T 2ghs_A 194 YFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYDTDGNHIARYEVP--- 269 (326)
T ss_dssp EEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEECTTCCEEEEEECS---
T ss_pred EEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCC-CEEEEEeCCCEEEEECCCCCEEEEEECC---
Confidence 655 456889999986 55 321 2222111233456789999998 6777777778999999988877776643
Q ss_pred CcCEEEEEEc-CCCCEEEEEeCC
Q psy8448 325 GGDFLCCTTS-PRGEWIYCVGED 346 (482)
Q Consensus 325 ~~~v~~~~~~-~~g~~l~~~~~d 346 (482)
...+.+++|+ ++++.|++++..
T Consensus 270 ~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 270 GKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp CSBEEEEEEESTTSCEEEEEEBC
T ss_pred CCCcEEEEEecCCCCEEEEEecC
Confidence 4568999998 888877665544
No 209
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.57 E-value=2.2e-11 Score=112.30 Aligned_cols=234 Identities=12% Similarity=0.079 Sum_probs=156.4
Q ss_pred EEEEcCCCCEEEEEe----------CCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC--CC
Q psy8448 105 CARFSPDGQYLITGS----------VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ--SG 172 (482)
Q Consensus 105 ~~~~s~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~--dg 172 (482)
.++++|||++|+.+. .++.|.+||..+.+....+......... +......+.|+|+|++|+++.. ++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~-~g~~p~~~~~spDG~~l~v~n~~~~~ 148 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFD-VGPYSWMNANTPNNADLLFFQFAAGP 148 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccc-cCCCccceEECCCCCEEEEEecCCCC
Confidence 899999999998875 3678999999988877766543111100 0123558999999999999874 47
Q ss_pred cEEEEEcCCCeEeEE-eecccCCCeEEEEEccCC-CEEEEEECCCeEEEEeCCCCceEEEee-----ccccce-eEEEEc
Q psy8448 173 KVKIWKIATGQCLRK-LEKAHSLGVTCIQFSRDN-SQILTASFDTYVRIHGLKSGKMLKEFR-----GHSSFV-NDITFT 244 (482)
Q Consensus 173 ~i~iwd~~~~~~~~~-~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~i-~~l~~~ 244 (482)
.|.++| .+++.+.. +. ... ++.+.|++ ..+++.+.||.+.++|. +++...... ....++ ....+.
T Consensus 149 ~v~viD-~t~~~~~~~i~--~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~ 221 (373)
T 2mad_H 149 AVGLVV-QGGSSDDQLLS--SPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQA 221 (373)
T ss_pred eEEEEE-CCCCEEeEEcC--CCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeE
Confidence 899999 99988777 52 121 24455654 45566778999999999 887663322 111221 234566
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCc--eeeeeeccC-------CCccceeEEEEcCCCCCEEEEEe---------CCCeEE
Q psy8448 245 ADGHSVLSASSDGTVKMWNLKTTE--CTSTFKSLG-------ASDIAVNSIHLLPKNTEHFVVCN---------KTNTVV 306 (482)
Q Consensus 245 ~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~-------~~~~~v~~i~~~~~~~~~l~~~~---------~d~~i~ 306 (482)
+++..++..+.++.+.+.|+.... ....+.... ........+.++|++..++++.. ..+.|.
T Consensus 222 ~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~ 301 (373)
T 2mad_H 222 NKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVT 301 (373)
T ss_pred ecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEE
Confidence 666665555578899999997653 222221100 01222345788999855555443 236799
Q ss_pred EEEc-CCcEEEEecCCcccCcCEEEEEEcCCCC-EEEEEe-CCcEEE
Q psy8448 307 IMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGE-WIYCVG-EDMVLV 350 (482)
Q Consensus 307 i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~-~l~~~~-~dg~i~ 350 (482)
++|. +++.+..+... .....++|+|||+ .++++. .++.|.
T Consensus 302 VID~~t~~vv~~i~~g----~~p~~i~~s~Dg~~~l~v~~~~~~~V~ 344 (373)
T 2mad_H 302 SVTGLVGQTSSQISLG----HDVDAISVAQDGGPDLYALSAGTEVLH 344 (373)
T ss_pred EEECCCCEEEEEEECC----CCcCeEEECCCCCeEEEEEcCCCCeEE
Confidence 9999 57777777643 3568999999999 777777 589999
No 210
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.57 E-value=3.1e-12 Score=115.18 Aligned_cols=231 Identities=11% Similarity=0.117 Sum_probs=158.6
Q ss_pred CCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEE
Q psy8448 98 GSKSHVECARFSPDGQ-YLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKI 176 (482)
Q Consensus 98 ~h~~~v~~~~~s~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~i 176 (482)
..........|+|+|+ +++++..++.|..|+. +++. ..+.. +...+..++++++|+++++...++.|.+
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~--------~~~~~~gl~~d~dG~l~v~~~~~~~v~~ 111 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLD--------ATAFTNGNAVDAQQRLVHCEHGRRAITR 111 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEEE--------SCSCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeC--------CCCccceeeECCCCCEEEEECCCCEEEE
Confidence 3455678999999998 5667778899999997 4542 22221 2356899999999986666556678999
Q ss_pred EEcCCCeEeEEeec---ccCCCeEEEEEccCCCEEEE----EEC-------------CCeEEEEeCCCCceEEEeecccc
Q psy8448 177 WKIATGQCLRKLEK---AHSLGVTCIQFSRDNSQILT----ASF-------------DTYVRIHGLKSGKMLKEFRGHSS 236 (482)
Q Consensus 177 wd~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~~ 236 (482)
|+.. ++....... .....+..+++.++|...++ |.. .+.|..+|..+++..... ...
T Consensus 112 ~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~ 188 (305)
T 3dr2_A 112 SDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLD 188 (305)
T ss_dssp ECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EES
T ss_pred ECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCC
Confidence 9975 543222211 11234678999999987775 332 356888888777654433 344
Q ss_pred ceeEEEEcCCCCEEEEEeCC------CcEEEEECCCCcee--eeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEE
Q psy8448 237 FVNDITFTADGHSVLSASSD------GTVKMWNLKTTECT--STFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIM 308 (482)
Q Consensus 237 ~i~~l~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~ 308 (482)
....++|+|+++.|+.+... +.|.+|++..+... ..+.. ........+++.++| .++ +++. +.|.+|
T Consensus 189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~--~~~~~pdgi~~d~~G-~lw-v~~~-~gv~~~ 263 (305)
T 3dr2_A 189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFAS--VPDGLPDGFCVDRGG-WLW-SSSG-TGVCVF 263 (305)
T ss_dssp SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEEC--CSSSCCCSEEECTTS-CEE-ECCS-SEEEEE
T ss_pred CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEE--CCCCCCCeEEECCCC-CEE-EecC-CcEEEE
Confidence 57889999999988877665 68999998765411 11111 123345678899998 544 4444 459999
Q ss_pred EcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448 309 NMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLV 350 (482)
Q Consensus 309 d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~ 350 (482)
+.+++.+..+... . .+.+++|+++++.|+.++.++..+
T Consensus 264 ~~~g~~~~~~~~~---~-~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 264 DSDGQLLGHIPTP---G-TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp CTTSCEEEEEECS---S-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred CCCCCEEEEEECC---C-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 9998888877654 2 478899999999999888875544
No 211
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.55 E-value=5.8e-11 Score=106.48 Aligned_cols=235 Identities=11% Similarity=0.047 Sum_probs=163.1
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy8448 99 SKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWK 178 (482)
Q Consensus 99 h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd 178 (482)
+...+.+++++++|+++++...++.|..+|.. ++.. .+.... ....+.++++.++++++++...++.|..+|
T Consensus 60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~ 131 (300)
T 2qc5_A 60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQ------PDSGPYGITEGLNGDIWFTQLNGDRIGKLT 131 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSS------TTCCEEEEEECSTTCEEEEETTTTEEEEEC
T ss_pred CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCC------CCCCCccceECCCCCEEEEccCCCeEEEEC
Confidence 34679999999999988877778899999987 5542 222111 125688999999998777776688999999
Q ss_pred cCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEE-eeccccceeEEEEcCCCCEEEEEeCCC
Q psy8448 179 IATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKE-FRGHSSFVNDITFTADGHSVLSASSDG 257 (482)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~l~~~~~~~~l~~~~~dg 257 (482)
.. ++............+..+++.++++..++...++.|..+|. +++.... ...+...+.+++++++++..++....+
T Consensus 132 ~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~ 209 (300)
T 2qc5_A 132 AD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGN 209 (300)
T ss_dssp TT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTT
T ss_pred CC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCC
Confidence 87 55443221224457899999999986666655789999998 5554432 223445688999999998777666677
Q ss_pred cEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCC
Q psy8448 258 TVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRG 337 (482)
Q Consensus 258 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g 337 (482)
.|.+||. +++...... ......+.++++.+++ .++++...++.|..++.++... .+.... ....+.+++++++|
T Consensus 210 ~i~~~~~-~g~~~~~~~--~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~~g~~~-~~~~~~-~~~~~~~i~~~~~g 283 (300)
T 2qc5_A 210 KIGRITT-TGEISEYDI--PTPNARPHAITAGKNS-EIWFTEWGANQIGRITNDNTIQ-EYQLQT-ENAEPHGITFGKDG 283 (300)
T ss_dssp EEEEECT-TCCEEEEEC--SSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTTSCEE-EEECCS-TTCCCCCEEECTTS
T ss_pred EEEEEcC-CCcEEEEEC--CCCCCCceEEEECCCC-CEEEeccCCCeEEEECCCCcEE-EEECCc-cCCccceeEeCCCC
Confidence 8999998 444333211 1334567899999998 6666666778999999866543 332111 13457889999999
Q ss_pred CEEEEEeCCcEEEE
Q psy8448 338 EWIYCVGEDMVLVV 351 (482)
Q Consensus 338 ~~l~~~~~dg~i~i 351 (482)
++.++.. . .|..
T Consensus 284 ~l~v~~~-~-~i~~ 295 (300)
T 2qc5_A 284 SVWFALK-C-KIGK 295 (300)
T ss_dssp CEEEECS-S-EEEE
T ss_pred CEEEEcc-C-ceEE
Confidence 8666544 4 6653
No 212
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.54 E-value=3.5e-13 Score=123.05 Aligned_cols=173 Identities=13% Similarity=0.090 Sum_probs=136.5
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe-----------EeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEE
Q psy8448 151 EAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ-----------CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRI 219 (482)
Q Consensus 151 ~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i 219 (482)
.+++.+++++...++++|+.+ .+.+|++.+.. .... ..+.. |..++| ++.+|+++ .++.|++
T Consensus 38 ~~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~--~~lp~-V~~l~f--d~~~L~v~-~~~~l~v 110 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWE--KEIPD-VIFVCF--HGDQVLVS-TRNALYS 110 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEE--EECTT-EEEEEE--ETTEEEEE-ESSEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEE--eeCCC-eeEEEE--CCCEEEEE-cCCcEEE
Confidence 368999999999999999988 56669875433 1122 23556 999999 88999998 7899999
Q ss_pred EeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEE
Q psy8448 220 HGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVC 299 (482)
Q Consensus 220 ~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~ 299 (482)
||+++.........|...+.++.+.+. .+++++.||.|.+||+.++.... ....|++++|+|+| ++++
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-------~~~~Vs~v~WSpkG---~~vg 178 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-------LAQNVTSFDVTNSQ---LAVL 178 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-------EEESEEEEEECSSE---EEEE
T ss_pred EEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-------ccCCceEEEEcCCc---eEEE
Confidence 999988776677778888888887754 38889999999999999877643 23479999999997 6789
Q ss_pred eCCCeEEEEEcCCcE---EEEecC------CcccCcCEEEEEEcCCCCEEEE
Q psy8448 300 NKTNTVVIMNMQGQI---VRSLSS------GKREGGDFLCCTTSPRGEWIYC 342 (482)
Q Consensus 300 ~~d~~i~i~d~~~~~---~~~~~~------~~~~~~~v~~~~~~~~g~~l~~ 342 (482)
..||.+++|+..+.. ...+.. +..+...|.++.|.+++.++++
T Consensus 179 ~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 179 LKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 999999999987665 444521 1123678999999999999886
No 213
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.54 E-value=2e-12 Score=119.79 Aligned_cols=220 Identities=13% Similarity=0.085 Sum_probs=145.7
Q ss_pred CCCCEEEEEeC-C----CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe----------CCCcE
Q psy8448 110 PDGQYLITGSV-D----GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS----------QSGKV 174 (482)
Q Consensus 110 ~~~~~l~s~~~-d----g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~----------~dg~i 174 (482)
++++.+++... + +.|.++|..+++.+..+.... .+ .++++||+++++++. .++.|
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~--------~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~V 151 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF--------LP--HPVAAEDGSFFAQASTVFERIARGKRTDYV 151 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS--------SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC--------CC--ceEECCCCCEEEEEeccccccccCCCCCEE
Confidence 46666655543 2 699999999999988877652 34 899999999888876 36789
Q ss_pred EEEEcCCCeEeEEeecc------cCCCeEEEEEccCCCEEEEEEC--CCeEEEEeCCCCceEEEeeccccceeEEEEcCC
Q psy8448 175 KIWKIATGQCLRKLEKA------HSLGVTCIQFSRDNSQILTASF--DTYVRIHGLKSGKMLKEFRGHSSFVNDITFTAD 246 (482)
Q Consensus 175 ~iwd~~~~~~~~~~~~~------~~~~v~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~ 246 (482)
.++|..+++.+..+..+ .......++|+|||++++++.. ++.|.+.|+.+++.+.++.-... ....|+
T Consensus 152 sviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~ 227 (426)
T 3c75_H 152 EVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPA 227 (426)
T ss_dssp EEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEE
T ss_pred EEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccC
Confidence 99999999988877432 1123457899999999999874 57899999999999888764221 223343
Q ss_pred -CCEEEEEeCCCcEEEEECCCCceeeee-eccCCCccc-eeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCc-
Q psy8448 247 -GHSVLSASSDGTVKMWNLKTTECTSTF-KSLGASDIA-VNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGK- 322 (482)
Q Consensus 247 -~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~-v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~- 322 (482)
.+.+++.+.||.+.+.+..+++..... ..+.....+ ...+.+.+++ ..++..+..+.+.+.|..+..........
T Consensus 228 g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg-~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~ 306 (426)
T 3c75_H 228 SPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRS-GRLVWPTYTGKIFQADLTAEGATFRAPIEA 306 (426)
T ss_dssp ETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTT-CEEEEEBTTSEEEEEEECSSCEEECCCEES
T ss_pred CCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCC-CEEEEEeCCCcEEEEeccCCceEEeeeeee
Confidence 356677778888888888655543211 001111112 1245678888 45555567889999999554333222100
Q ss_pred ------c---cCcCEEEEEEcCCCCEEEEEe
Q psy8448 323 ------R---EGGDFLCCTTSPRGEWIYCVG 344 (482)
Q Consensus 323 ------~---~~~~v~~~~~~~~g~~l~~~~ 344 (482)
. .......++++|+++.+++..
T Consensus 307 ~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~ 337 (426)
T 3c75_H 307 LTEAERADDWRPGGWQQTAYHRQSDRIYLLV 337 (426)
T ss_dssp SCTTTGGGTEEECSSSCEEEEGGGTEEEEEE
T ss_pred ccccccccccccCCceeeEEcCCCCEEEEEe
Confidence 0 001112368899988887764
No 214
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.53 E-value=1.4e-12 Score=131.28 Aligned_cols=241 Identities=11% Similarity=0.050 Sum_probs=162.4
Q ss_pred cCCCCcEEEEEEcCCCCEEEEEe-----CCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC
Q psy8448 97 FGSKSHVECARFSPDGQYLITGS-----VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS 171 (482)
Q Consensus 97 ~~h~~~v~~~~~s~~~~~l~s~~-----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d 171 (482)
.+|...+..++|||||++||.+. ....|++||+.+++..... .. ......++|+ |++.|+.++.+
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~--------~~k~~~~~Ws-Dg~~l~y~~~~ 194 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LK--------DVKFSGISWL-GNEGFFYSSYD 194 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EE--------EEESCCCEEE-TTTEEEEEESS
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cC--------CceeccEEEe-CCCEEEEEEec
Confidence 35667899999999999998543 2357999999999864431 11 1113577899 99999999877
Q ss_pred Cc-------------EEEEEcCCCeE--eEEee-cc-cCCCeEEEEEccCCCEEEEEEC----CCeEEEEeCCCCc-eEE
Q psy8448 172 GK-------------VKIWKIATGQC--LRKLE-KA-HSLGVTCIQFSRDNSQILTASF----DTYVRIHGLKSGK-MLK 229 (482)
Q Consensus 172 g~-------------i~iwd~~~~~~--~~~~~-~~-~~~~v~~i~~~~~~~~l~~~~~----dg~i~i~d~~~~~-~~~ 229 (482)
.. |++|++.++.. ...+. .. +......+.|+|+|++|+.... ++.|+++|+.++. ...
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~ 274 (693)
T 3iuj_A 195 KPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLL 274 (693)
T ss_dssp CCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCE
T ss_pred CcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceE
Confidence 43 99999877643 22221 22 3445788999999998865442 2489999998764 345
Q ss_pred EeeccccceeEEEEcCCCCEEEEEeC----CCcEEEEECCCCce--eeeeeccCCCccceeEEEEcCCCCCEEEEEeCCC
Q psy8448 230 EFRGHSSFVNDITFTADGHSVLSASS----DGTVKMWNLKTTEC--TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTN 303 (482)
Q Consensus 230 ~~~~~~~~i~~l~~~~~~~~l~~~~~----dg~i~i~d~~~~~~--~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~ 303 (482)
.+..+....... +++++..|+..+. .+.|..+|+.++.. ...+. .+...+. .|++++..++++...++
T Consensus 275 ~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~---~~~~~~~--~~s~~g~~lv~~~~~~g 348 (693)
T 3iuj_A 275 TVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI---PERQQVL--TVHSGSGYLFAEYMVDA 348 (693)
T ss_dssp EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE---CCCSSCE--EEEEETTEEEEEEEETT
T ss_pred EEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe---cCCCCEE--EEEEECCEEEEEEEECC
Confidence 555555555554 6666766665543 25799999988654 22333 3344444 78888844444555554
Q ss_pred --eEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCC----cEEEEEeeh
Q psy8448 304 --TVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGED----MVLVVRLIQ 355 (482)
Q Consensus 304 --~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~d----g~i~iw~~~ 355 (482)
.|++|++.+.....+.... ...+..+.++++++.|+....+ +.++.|++.
T Consensus 349 ~~~l~~~d~~g~~~~~l~~p~--~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~ 404 (693)
T 3iuj_A 349 TARVEQFDYEGKRVREVALPG--LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPK 404 (693)
T ss_dssp EEEEEEECTTSCEEEEECCSS--SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred eeEEEEEECCCCeeEEeecCC--CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECC
Confidence 6888998877766665321 4457778888898877766555 788888764
No 215
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.52 E-value=1.5e-11 Score=110.29 Aligned_cols=190 Identities=13% Similarity=0.090 Sum_probs=125.3
Q ss_pred cEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEE
Q psy8448 152 AVMSLAYSRDSE-MLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKE 230 (482)
Q Consensus 152 ~i~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 230 (482)
-..+..|+|++. ++++...++.|..||..+++. ..+ .....+.++++++++++ +++. ++.|.+||.++++....
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~--~~~~~~~~i~~~~dG~l-~v~~-~~~l~~~d~~~g~~~~~ 88 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRV--TMDAPVSSVALRQSGGY-VATI-GTKFCALNWKEQSAVVL 88 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEE--ECSSCEEEEEEBTTSSE-EEEE-TTEEEEEETTTTEEEEE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEE--eCCCceEEEEECCCCCE-EEEE-CCeEEEEECCCCcEEEE
Confidence 456788999654 555555788999999987765 333 24567999999999984 4444 66899999988765332
Q ss_pred eec----cccceeEEEEcCCCCEEEEEeCC---------CcEEEEECCC-CceeeeeeccCCCccceeEEEEcCCCCCEE
Q psy8448 231 FRG----HSSFVNDITFTADGHSVLSASSD---------GTVKMWNLKT-TECTSTFKSLGASDIAVNSIHLLPKNTEHF 296 (482)
Q Consensus 231 ~~~----~~~~i~~l~~~~~~~~l~~~~~d---------g~i~i~d~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 296 (482)
... ....+..++++|+|+++++.... ..-.+|.+.. ++..... ......+.++|+|++..++
T Consensus 89 ~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~----~~~~~pngi~~spdg~~ly 164 (297)
T 3g4e_A 89 ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYF----DQVDISNGLDWSLDHKIFY 164 (297)
T ss_dssp EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEE----EEESBEEEEEECTTSCEEE
T ss_pred EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEe----eccccccceEEcCCCCEEE
Confidence 221 12457899999999966654321 2234555443 3332222 2233467899999995566
Q ss_pred EEEeCCCeEEEEEcC---CcEE--EEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448 297 VVCNKTNTVVIMNMQ---GQIV--RSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLV 350 (482)
Q Consensus 297 ~~~~~d~~i~i~d~~---~~~~--~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~ 350 (482)
++.+.++.|..|++. +... ..+............++++++|++.++...++.|.
T Consensus 165 v~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~ 223 (297)
T 3g4e_A 165 YIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVI 223 (297)
T ss_dssp EEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEE
T ss_pred EecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEE
Confidence 677778999999862 3321 12221111234577899999998888887888888
No 216
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.52 E-value=5.5e-12 Score=114.68 Aligned_cols=263 Identities=14% Similarity=0.202 Sum_probs=172.1
Q ss_pred cceeeecCCCCcEEEEEEcCCCCEEEEEe----------CCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC
Q psy8448 91 LSKQIKFGSKSHVECARFSPDGQYLITGS----------VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR 160 (482)
Q Consensus 91 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~ 160 (482)
....+..|.. + . ++++|||++|++++ .++.|.+||..+++....+........ ........++++|
T Consensus 71 v~~~I~vG~~-P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~-~~g~~P~~~a~sp 146 (386)
T 3sjl_D 71 VIGMIDGGFL-P-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRF-LVGTYPWMTSLTP 146 (386)
T ss_dssp EEEEEEECSS-C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC-CBSCCGGGEEECT
T ss_pred EEEEEECCCC-C-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcccc-ccCCCCceEEEcC
Confidence 3344544443 3 4 99999999987765 367899999999998877754320000 0012355789999
Q ss_pred CCCEEEEEeC--CCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCC-CceEEEeecc---
Q psy8448 161 DSEMLASGSQ--SGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKS-GKMLKEFRGH--- 234 (482)
Q Consensus 161 ~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~--- 234 (482)
||++++++.. ++.|.++|+.+++.+..+.... . ...+......+++.+.||.+.+.++.+ ++.......+
T Consensus 147 DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g---~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~ 222 (386)
T 3sjl_D 147 DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD---C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP 222 (386)
T ss_dssp TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS---E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC
T ss_pred CCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC---c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecc
Confidence 9999998864 6899999999999998884221 1 223333456777888899999999876 5543221111
Q ss_pred -cccee-EEEEc-CCCCEEEEEeCCCcEEEEECCCCc--eeeeeecc-------CCCccceeEEEEcCCCCCEEEEEeC-
Q psy8448 235 -SSFVN-DITFT-ADGHSVLSASSDGTVKMWNLKTTE--CTSTFKSL-------GASDIAVNSIHLLPKNTEHFVVCNK- 301 (482)
Q Consensus 235 -~~~i~-~l~~~-~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~-------~~~~~~v~~i~~~~~~~~~l~~~~~- 301 (482)
..++. ...|. ++|++++ .+.+|.|.+.|+.+.. ....+... .-.......+++++++..++++...
T Consensus 223 ~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~ 301 (386)
T 3sjl_D 223 EDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQR 301 (386)
T ss_dssp TTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred ccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccc
Confidence 12221 24564 5775444 6668999999997654 22222200 0012233457778888555554331
Q ss_pred --------CCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCC-EEEEEe-CCcEEEEEeehhhhhhhcccccceee
Q psy8448 302 --------TNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGE-WIYCVG-EDMVLVVRLIQQYLKESNLMKTLQCL 370 (482)
Q Consensus 302 --------d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~-~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~ 370 (482)
.+.|.++|. +++.+..+... ..+..+++++|++ +|++.. .++.|. ++
T Consensus 302 ~~~~hk~~~~~V~viD~~t~kv~~~i~vg----~~~~~lavs~D~~~~ly~tn~~~~~Vs------------------Vi 359 (386)
T 3sjl_D 302 DEWRHKTASRFVVVLDAKTGERLAKFEMG----HEIDSINVSQDEKPLLYALSTGDKTLY------------------IH 359 (386)
T ss_dssp CTTCTTSCEEEEEEEETTTCCEEEEEEEE----EEECEEEECSSSSCEEEEEETTTTEEE------------------EE
T ss_pred cccccCCCCCEEEEEECCCCeEEEEEECC----CCcceEEECCCCCeEEEEEcCCCCeEE------------------EE
Confidence 257999999 68888887753 3677999999997 677654 589999 77
Q ss_pred eecccceeeccccc
Q psy8448 371 QEETGVSLNTVDSV 384 (482)
Q Consensus 371 ~~~~~~~~~~~~~~ 384 (482)
|..+++.+.++...
T Consensus 360 D~~t~k~~~~i~~~ 373 (386)
T 3sjl_D 360 DAESGEELRSVNQL 373 (386)
T ss_dssp ETTTCCEEEEECCC
T ss_pred ECCCCcEEEEecCC
Confidence 88888777666543
No 217
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.45 E-value=2e-10 Score=104.26 Aligned_cols=184 Identities=13% Similarity=0.076 Sum_probs=122.1
Q ss_pred EEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEe
Q psy8448 153 VMSLAYSRDSE-MLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEF 231 (482)
Q Consensus 153 i~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 231 (482)
..+..|+|++. .+++...++.|..||..+++.. .+. ....+.+++++++++++++ +. ..|.+||.++++.....
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~--~~~~v~~i~~~~dg~l~v~-~~-~gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA--LPFMGSALAKISDSKQLIA-SD-DGLFLRDTATGVLTLHA 125 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE--CSSCEEEEEEEETTEEEEE-ET-TEEEEEETTTCCEEEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE--CCCcceEEEEeCCCeEEEE-EC-CCEEEEECCCCcEEEEe
Confidence 45678999754 5555557789999999877643 332 3467999999999876665 44 45999999888754322
Q ss_pred ec----cccceeEEEEcCCCCEEEEEeC------CCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeC
Q psy8448 232 RG----HSSFVNDITFTADGHSVLSASS------DGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK 301 (482)
Q Consensus 232 ~~----~~~~i~~l~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~ 301 (482)
.. ....+.+++++|+|+++++... .+.|..++ +++... +. ........++|+|++..++++.+.
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~---~~~~~~~~i~~s~dg~~lyv~~~~ 199 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LF---ADISIPNSICFSPDGTTGYFVDTK 199 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EE---EEESSEEEEEECTTSCEEEEEETT
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-ee---CCCcccCCeEEcCCCCEEEEEECC
Confidence 21 1245889999999997665432 24566666 444332 22 222346789999998445566666
Q ss_pred CCeEEEEEcC---C-c-----EEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448 302 TNTVVIMNMQ---G-Q-----IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLV 350 (482)
Q Consensus 302 d~~i~i~d~~---~-~-----~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~ 350 (482)
++.|.+|+.. + . .+..+.. .......++++++|.+.++...++.|.
T Consensus 200 ~~~I~~~d~~~~~Gl~~~~~~~~~~~~~---~~~~p~gi~~d~~G~lwva~~~~~~v~ 254 (326)
T 2ghs_A 200 VNRLMRVPLDARTGLPTGKAEVFIDSTG---IKGGMDGSVCDAEGHIWNARWGEGAVD 254 (326)
T ss_dssp TCEEEEEEBCTTTCCBSSCCEEEEECTT---SSSEEEEEEECTTSCEEEEEETTTEEE
T ss_pred CCEEEEEEcccccCCcccCceEEEECCC---CCCCCCeeEECCCCCEEEEEeCCCEEE
Confidence 7899999974 4 2 1222221 134567899999998877776778888
No 218
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.45 E-value=3.1e-11 Score=110.49 Aligned_cols=243 Identities=10% Similarity=0.062 Sum_probs=158.6
Q ss_pred CcEEEEEEcCCCCEEEEEe--CCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC-----CCc
Q psy8448 101 SHVECARFSPDGQYLITGS--VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ-----SGK 173 (482)
Q Consensus 101 ~~v~~~~~s~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~-----dg~ 173 (482)
..+..++++|+|+++++.. .++.++||.+.+++.. .+.... .....|-..+..+++.++++++++-.. ++.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~-~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQS-GNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCC-SSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcc-cCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence 6789999999999988864 2343556665555432 111100 111234568999999999876655433 578
Q ss_pred EEEEEcCCCeEeEEeecc-----cCCCeEEEEEccCCCEEEEEE----CCCeEEEEeCCCCceEEEeeccc---------
Q psy8448 174 VKIWKIATGQCLRKLEKA-----HSLGVTCIQFSRDNSQILTAS----FDTYVRIHGLKSGKMLKEFRGHS--------- 235 (482)
Q Consensus 174 i~iwd~~~~~~~~~~~~~-----~~~~v~~i~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~--------- 235 (482)
|.+||+.+++.+..+... +...+..+++++++..++.+. .++.|.+||+.+++....+.+|.
T Consensus 95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~ 174 (343)
T 2qe8_A 95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL 174 (343)
T ss_dssp EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence 999999999877666321 123468999998655554443 57899999998887665553321
Q ss_pred --------------------cceeEEEEcCCCCEEEEEeCCC-cEEEEECC---CCce-----eeeeeccCCCccceeEE
Q psy8448 236 --------------------SFVNDITFTADGHSVLSASSDG-TVKMWNLK---TTEC-----TSTFKSLGASDIAVNSI 286 (482)
Q Consensus 236 --------------------~~i~~l~~~~~~~~l~~~~~dg-~i~i~d~~---~~~~-----~~~~~~~~~~~~~v~~i 286 (482)
..+..|+|+|+++.|+.+...+ .+..++.. .+.. ...+... ++......+
T Consensus 175 ~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-g~~g~pdgi 253 (343)
T 2qe8_A 175 VIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERY-SEKPICDGI 253 (343)
T ss_dssp EETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE-EECCSCSCE
T ss_pred eECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEec-ccCCCCceE
Confidence 2357899999999888887766 44444432 1110 0001100 122345679
Q ss_pred EEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEE
Q psy8448 287 HLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVL 349 (482)
Q Consensus 287 ~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i 349 (482)
+++++| .++++...++.|.+||. +++...... .. ......++++.++|.++++.+..+.+
T Consensus 254 a~d~~G-~l~va~~~~~~V~~~d~~~G~~~~~~~-~~-~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 254 SIDKDH-NIYVGDLAHSAIGVITSADRAYKLLVT-DE-KLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp EECTTC-CEEEEEGGGTEEEEEETTTTEEEEEEE-CG-GGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred EECCCC-CEEEEccCCCeEEEEECCCCCEEEEEE-CC-ceecCCeeEECCCCcEEEEeCccccc
Confidence 999998 88888888999999999 776433322 21 24467899999999888877655444
No 219
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.44 E-value=1.9e-11 Score=113.28 Aligned_cols=261 Identities=14% Similarity=0.172 Sum_probs=173.7
Q ss_pred ccceeeecCCCCcEEEEEEcCCCCEEEEEe----------CCCeEEEEecCCCceeeccccccccccccccccEEEEEEc
Q psy8448 90 QLSKQIKFGSKSHVECARFSPDGQYLITGS----------VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYS 159 (482)
Q Consensus 90 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~ 159 (482)
+...++..+. .+ .+.++|||++|+++. .++.|.++|..+++....+......... .......+.++
T Consensus 110 ~vv~~I~vG~-~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~-~g~~P~~~~~s 185 (426)
T 3c75_H 110 RILGMTDGGF-LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFL-VGTYQWMNALT 185 (426)
T ss_dssp EEEEEEEECS-SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC-BSCCGGGSEEC
T ss_pred EEEEEEECCC-CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccc-cCCCcceEEEc
Confidence 3344454454 34 899999999988775 3678999999999988776643110000 01234577899
Q ss_pred CCCCEEEEEeC--CCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCC-CEEEEEECCCeEEEEeCCCCceEEE----ee
Q psy8448 160 RDSEMLASGSQ--SGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDN-SQILTASFDTYVRIHGLKSGKMLKE----FR 232 (482)
Q Consensus 160 ~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~----~~ 232 (482)
|||++++++.. ++.|.+.|+.+++.+..+..+. . ....|++ ..+++.+.||.+.+.+..+++.... +.
T Consensus 186 pDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g---~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~ 260 (426)
T 3c75_H 186 PDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD---C--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFH 260 (426)
T ss_dssp TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS---E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCS
T ss_pred CCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC---c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeec
Confidence 99999999874 5789999999999988874321 1 2334433 5566677788888888866655432 11
Q ss_pred ccccce-eEEEEcCCCCEEEEEeCCCcEEEEECCCCcee--eeeeccC-------CCccceeEEEEcCCCCCEEEEEe--
Q psy8448 233 GHSSFV-NDITFTADGHSVLSASSDGTVKMWNLKTTECT--STFKSLG-------ASDIAVNSIHLLPKNTEHFVVCN-- 300 (482)
Q Consensus 233 ~~~~~i-~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~-------~~~~~v~~i~~~~~~~~~l~~~~-- 300 (482)
....++ ..+.+.+++..++..+..+.|.+.|+...... ..+.... ........++++|++..++++..
T Consensus 261 v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~ 340 (426)
T 3c75_H 261 TEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQR 340 (426)
T ss_dssp CTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEEC
T ss_pred cCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccc
Confidence 111221 24567899888888888899999998765421 1111100 00112223789999855555543
Q ss_pred -------CCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCC-EEEEEe-CCcEEEEEeehhhhhhhcccccceee
Q psy8448 301 -------KTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGE-WIYCVG-EDMVLVVRLIQQYLKESNLMKTLQCL 370 (482)
Q Consensus 301 -------~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~-~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~ 370 (482)
.++.|.++|. +.+.+..+... .....++|+|||+ ++++.. .++.|. ++
T Consensus 341 ~~gthk~~s~~VsVID~~T~kvv~~I~vg----~~P~gia~spDg~~~lyv~n~~s~~Vs------------------VI 398 (426)
T 3c75_H 341 DEWKHKAASRFVVVLNAETGERINKIELG----HEIDSINVSQDAEPLLYALSAGTQTLH------------------IY 398 (426)
T ss_dssp CTTCTTSCEEEEEEEETTTCCEEEEEEEE----EEECEEEECCSSSCEEEEEETTTTEEE------------------EE
T ss_pred ccccccCCCCEEEEEECCCCeEEEEEECC----CCcCeEEEccCCCEEEEEEcCCCCeEE------------------EE
Confidence 1357999999 68888888653 3468899999999 888888 589999 67
Q ss_pred eecccceeecc
Q psy8448 371 QEETGVSLNTV 381 (482)
Q Consensus 371 ~~~~~~~~~~~ 381 (482)
|..+++.+.++
T Consensus 399 D~~t~kvv~tI 409 (426)
T 3c75_H 399 DAATGEELRSV 409 (426)
T ss_dssp ETTTCCEEEEE
T ss_pred ECCCCCEEEEe
Confidence 77777655554
No 220
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.40 E-value=2.1e-10 Score=108.78 Aligned_cols=232 Identities=12% Similarity=0.095 Sum_probs=160.1
Q ss_pred EEEEeCCCeEEEEecCCCceeecccccccc---------------------------------ccccccccEEEEEE---
Q psy8448 115 LITGSVDGFIEVWNFTTGKIRKDLKYQAQD---------------------------------NFMLMEEAVMSLAY--- 158 (482)
Q Consensus 115 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~---------------------------------~~~~h~~~i~~l~~--- 158 (482)
+.+|+..|.|+|+-+.+++.+..+..-... .+.--...-..+++
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 467788899999988888876655321110 00000111233333
Q ss_pred cCCCCEEEEEeC-CCcEEEEEcCCCeEeEEeecccCCCeEEEEE-c-cCCCEEEEEE------------------CCCeE
Q psy8448 159 SRDSEMLASGSQ-SGKVKIWKIATGQCLRKLEKAHSLGVTCIQF-S-RDNSQILTAS------------------FDTYV 217 (482)
Q Consensus 159 ~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~-~-~~~~~l~~~~------------------~dg~i 217 (482)
.+||++++.+.. ++.|.+.|+.+.+....+..........+++ . |+++++++++ .++.+
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 237888888765 4579999999999888664445566888898 5 8999999885 24589
Q ss_pred EEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCC--------------------------------------cE
Q psy8448 218 RIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDG--------------------------------------TV 259 (482)
Q Consensus 218 ~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg--------------------------------------~i 259 (482)
.+.|.++.+...++.-.. ....++++|+|+++++.+.+. .|
T Consensus 178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 999999999888877433 467889999999999888543 36
Q ss_pred EEEECCC--Cce-eeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-------------EEEEecCCcc
Q psy8448 260 KMWNLKT--TEC-TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQ-------------IVRSLSSGKR 323 (482)
Q Consensus 260 ~i~d~~~--~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~-------------~~~~~~~~~~ 323 (482)
.+.|.++ ++. +..+. -.....++.++|||..+++++..+++|.++|+... .......
T Consensus 257 ~VID~~~~~~~~~~~~Ip----vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v--- 329 (595)
T 1fwx_A 257 KVVDGRKEASSLFTRYIP----IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL--- 329 (595)
T ss_dssp EEEECSGGGCCSSEEEEE----EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC---
T ss_pred EEEeCcccCCceeEEEEe----cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC---
Confidence 7777776 433 33442 12345689999999556666667899999999532 3333333
Q ss_pred cCcCEEEEEEcCCCCEEE-EEeCCcEEEEEeehh
Q psy8448 324 EGGDFLCCTTSPRGEWIY-CVGEDMVLVVRLIQQ 356 (482)
Q Consensus 324 ~~~~v~~~~~~~~g~~l~-~~~~dg~i~iw~~~~ 356 (482)
......++|+|+| +++ +.--|+.|.+|++..
T Consensus 330 -G~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 330 -GLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp -CSCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred -CCCcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence 3456899999999 555 566799999777653
No 221
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.38 E-value=2.1e-10 Score=103.18 Aligned_cols=186 Identities=10% Similarity=0.011 Sum_probs=119.9
Q ss_pred ccEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEE
Q psy8448 151 EAVMSLAYSRDSE-MLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLK 229 (482)
Q Consensus 151 ~~i~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 229 (482)
.......|+|+++ ++++...++.|..|+. +++ ...+ ......+..++++++|+++++...++.|.+|+.. ++...
T Consensus 45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~-~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~ 120 (305)
T 3dr2_A 45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVL-LDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHL 120 (305)
T ss_dssp SSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEE-EESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred cCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEE-eCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEE
Confidence 4567889999998 5566667889999997 454 3334 3355678999999999866655556889999986 55322
Q ss_pred Eeec----cccceeEEEEcCCCCEEEE----EeC-------------CCcEEEEECCCCceeeeeeccCCCccceeEEEE
Q psy8448 230 EFRG----HSSFVNDITFTADGHSVLS----ASS-------------DGTVKMWNLKTTECTSTFKSLGASDIAVNSIHL 288 (482)
Q Consensus 230 ~~~~----~~~~i~~l~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~ 288 (482)
.... ....+..++++|+|+++++ |.. .+.|..||..+++..... .......++|
T Consensus 121 ~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-----~~~~p~gl~~ 195 (305)
T 3dr2_A 121 LVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-----DLDHPNGLAF 195 (305)
T ss_dssp EECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-----EESSEEEEEE
T ss_pred EEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-----cCCCCcceEE
Confidence 2111 1134678999999997776 332 246778887666543322 1224578999
Q ss_pred cCCCCCEEEEEeCC------CeEEEEEcCCcEEE---EecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448 289 LPKNTEHFVVCNKT------NTVVIMNMQGQIVR---SLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLV 350 (482)
Q Consensus 289 ~~~~~~~l~~~~~d------~~i~i~d~~~~~~~---~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~ 350 (482)
+|++ ..++++... +.|.+|++.+..+. .+... .......++++++|++. +++.+| |.
T Consensus 196 spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~--~~~~pdgi~~d~~G~lw-v~~~~g-v~ 261 (305)
T 3dr2_A 196 SPDE-QTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV--PDGLPDGFCVDRGGWLW-SSSGTG-VC 261 (305)
T ss_dssp CTTS-SEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC--SSSCCCSEEECTTSCEE-ECCSSE-EE
T ss_pred cCCC-CEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC--CCCCCCeEEECCCCCEE-EecCCc-EE
Confidence 9998 555555544 78999998432221 11111 12334568899999844 444444 66
No 222
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.37 E-value=3e-10 Score=97.76 Aligned_cols=208 Identities=10% Similarity=0.035 Sum_probs=148.3
Q ss_pred ccceeeecCCCCcEEEEEEcCCCCEEEEEeC--CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEE
Q psy8448 90 QLSKQIKFGSKSHVECARFSPDGQYLITGSV--DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLAS 167 (482)
Q Consensus 90 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~ 167 (482)
+....+..+.......+.|+|++.+.++.+. ++.|++.|+.+++....+..... .....+++. ++.|..
T Consensus 10 ~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~-------~fgeGi~~~--g~~lyv 80 (266)
T 2iwa_A 10 EVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS-------YFGEGLTLL--NEKLYQ 80 (266)
T ss_dssp EEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT-------CCEEEEEEE--TTEEEE
T ss_pred eEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC-------cceEEEEEe--CCEEEE
Confidence 4444554444445789999998755555443 57999999999998887664321 122345554 445555
Q ss_pred Ee-CCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccc-----cceeEE
Q psy8448 168 GS-QSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHS-----SFVNDI 241 (482)
Q Consensus 168 ~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~i~~l 241 (482)
+. .++.+.++|..+.+.+..+..+... ...++++++.++++..++.|.++|.++.+.+..+.-.. ..++.+
T Consensus 81 ~t~~~~~v~viD~~t~~v~~~i~~g~~~---g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nel 157 (266)
T 2iwa_A 81 VVWLKNIGFIYDRRTLSNIKNFTHQMKD---GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNEL 157 (266)
T ss_dssp EETTCSEEEEEETTTTEEEEEEECCSSS---CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred EEecCCEEEEEECCCCcEEEEEECCCCC---eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeE
Confidence 54 6789999999999999888543122 23355688888888788999999999998887776321 136688
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCC----------CccceeEEEEcCCCCCEEEEEeCCCeEEEEEc
Q psy8448 242 TFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGA----------SDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM 310 (482)
Q Consensus 242 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----------~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~ 310 (482)
.|. ++...+....++.|.+.|..+++.+..+..... .....+.|+++|++..+++++...+.+...++
T Consensus 158 e~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l 235 (266)
T 2iwa_A 158 EYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL 235 (266)
T ss_dssp EEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred EEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence 888 675555555678999999999998888863210 11356899999999778888888899998887
No 223
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.37 E-value=3.3e-11 Score=121.15 Aligned_cols=187 Identities=17% Similarity=0.188 Sum_probs=122.9
Q ss_pred cccEEEEEEcCCCCEEEEEe-----CCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCC---------
Q psy8448 150 EEAVMSLAYSRDSEMLASGS-----QSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDT--------- 215 (482)
Q Consensus 150 ~~~i~~l~~~~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg--------- 215 (482)
...+..++|||||++|+.+. ....|++||+.+++.+.... .......++|+ |++.|+.++.+.
T Consensus 128 ~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~--~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 128 TTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL--KDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp CCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE--EEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred cEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc--CCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence 45688899999999988643 22579999999998654321 11113567899 999999988774
Q ss_pred ----eEEEEeCCCCce----EEEeec-cccceeEEEEcCCCCEEEEEeC----CCcEEEEECCCCc-eeeeeeccCCCcc
Q psy8448 216 ----YVRIHGLKSGKM----LKEFRG-HSSFVNDITFTADGHSVLSASS----DGTVKMWNLKTTE-CTSTFKSLGASDI 281 (482)
Q Consensus 216 ----~i~i~d~~~~~~----~~~~~~-~~~~i~~l~~~~~~~~l~~~~~----dg~i~i~d~~~~~-~~~~~~~~~~~~~ 281 (482)
.|++|++.++.. +..... +......+.|+|||++|+.... ...|.++|+.++. ....+. .+..
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~---~~~~ 281 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ---GDLD 281 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE---CSSS
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe---CCCC
Confidence 399999987653 222233 4445788999999998865443 2479999998764 233333 3333
Q ss_pred ceeEEEEcCCCCCEEEEEeCC---CeEEEEEcCC-cE--EEEecCCcccCcCEEEEEEcCCCCEEEEEeC-CcE
Q psy8448 282 AVNSIHLLPKNTEHFVVCNKT---NTVVIMNMQG-QI--VRSLSSGKREGGDFLCCTTSPRGEWIYCVGE-DMV 348 (482)
Q Consensus 282 ~v~~i~~~~~~~~~l~~~~~d---~~i~i~d~~~-~~--~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~-dg~ 348 (482)
..... +++++..+++.+..+ +.|..+++.+ .. ...+..+ ...+. .|++++++|+.... ++.
T Consensus 282 ~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~---~~~~~--~~s~~g~~lv~~~~~~g~ 349 (693)
T 3iuj_A 282 ADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE---RQQVL--TVHSGSGYLFAEYMVDAT 349 (693)
T ss_dssp SCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC---CSSCE--EEEEETTEEEEEEEETTE
T ss_pred ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC---CCCEE--EEEEECCEEEEEEEECCe
Confidence 34443 667775666666554 5788999853 22 2344433 22333 88889988876554 553
No 224
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.33 E-value=1.2e-09 Score=99.91 Aligned_cols=233 Identities=11% Similarity=0.104 Sum_probs=152.7
Q ss_pred CCCCEEEE-EeCCCeEEEEecCCC----ceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC------CcEEEEE
Q psy8448 110 PDGQYLIT-GSVDGFIEVWNFTTG----KIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS------GKVKIWK 178 (482)
Q Consensus 110 ~~~~~l~s-~~~dg~v~iwd~~~~----~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d------g~i~iwd 178 (482)
+++++|+. |..+++|+|+|+.+. +....+.......-.+ ......+...|+| .++++..+ |.|.++|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g-~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSG-YSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHC-EEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccC-CCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEE
Confidence 78888765 457789999999755 4444332110000000 1245667888999 66666555 7899999
Q ss_pred cCCCeEeEEeecccCC--CeEEEEEccCCCEEEEEE-------------------CCCeEEEEeCCCCceEEEeecc--c
Q psy8448 179 IATGQCLRKLEKAHSL--GVTCIQFSRDNSQILTAS-------------------FDTYVRIHGLKSGKMLKEFRGH--S 235 (482)
Q Consensus 179 ~~~~~~~~~~~~~~~~--~v~~i~~~~~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~~~~~~--~ 235 (482)
..+.+.+.++..+... --..+.|+|+++.+++.. .+..|.+||+.+++.+.++... .
T Consensus 171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g 250 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN 250 (462)
T ss_dssp TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence 9999999888533221 133578899999888874 3689999999998888877642 2
Q ss_pred cceeEEEE--cCCCCEEEEEe------CCCcEEEEECCCCce--eeee--ec--cCC-----------CccceeEEEEcC
Q psy8448 236 SFVNDITF--TADGHSVLSAS------SDGTVKMWNLKTTEC--TSTF--KS--LGA-----------SDIAVNSIHLLP 290 (482)
Q Consensus 236 ~~i~~l~~--~~~~~~l~~~~------~dg~i~i~d~~~~~~--~~~~--~~--~~~-----------~~~~v~~i~~~~ 290 (482)
.....+.| +|+++++++++ .+++|.+|..+.++. ...+ .. ... .......|.++|
T Consensus 251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~ 330 (462)
T 2ece_A 251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL 330 (462)
T ss_dssp EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT
T ss_pred CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC
Confidence 34556666 99999888776 466887776654421 1111 00 000 023468899999
Q ss_pred CCCCEEEEEeCCCeEEEEEcC----CcEEEEecCCcc-----------cCcCEEEEEEcCCCCEEEEEe
Q psy8448 291 KNTEHFVVCNKTNTVVIMNMQ----GQIVRSLSSGKR-----------EGGDFLCCTTSPRGEWIYCVG 344 (482)
Q Consensus 291 ~~~~~l~~~~~d~~i~i~d~~----~~~~~~~~~~~~-----------~~~~v~~~~~~~~g~~l~~~~ 344 (482)
++..++++.-..+.|.+||+. .+.+..+..+.. ..+....++++|||++|+++.
T Consensus 331 DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 331 DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 995555556667999999983 244544443200 011357799999999999887
No 225
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.31 E-value=1.2e-09 Score=99.93 Aligned_cols=197 Identities=9% Similarity=0.042 Sum_probs=131.5
Q ss_pred EEc--CCCCEEEEEe-CCCcEEEEEcCCC----eEeEEee------cccCCCeEEEEEccCCCEEEEEECC------CeE
Q psy8448 157 AYS--RDSEMLASGS-QSGKVKIWKIATG----QCLRKLE------KAHSLGVTCIQFSRDNSQILTASFD------TYV 217 (482)
Q Consensus 157 ~~~--~~~~~l~~~~-~dg~i~iwd~~~~----~~~~~~~------~~~~~~v~~i~~~~~~~~l~~~~~d------g~i 217 (482)
.++ +++++|+..+ .++.|.++|+.+. +....++ +.....-..+...|+| .++++..+ |.|
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 346 7788777755 6789999998755 5555552 0011235667888999 66666555 789
Q ss_pred EEEeCCCCceEEEeecccc---ceeEEEEcCCCCEEEEEe-------------------CCCcEEEEECCCCceeeeeec
Q psy8448 218 RIHGLKSGKMLKEFRGHSS---FVNDITFTADGHSVLSAS-------------------SDGTVKMWNLKTTECTSTFKS 275 (482)
Q Consensus 218 ~i~d~~~~~~~~~~~~~~~---~i~~l~~~~~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~~~~~ 275 (482)
.++|.++.+.+.++..... .-..+.|+|+++.+++.. .+.+|.+||+.+++.+.++..
T Consensus 167 ~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v 246 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL 246 (462)
T ss_dssp EEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES
T ss_pred EEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec
Confidence 9999999999988863222 234588899999888874 368899999999887777763
Q ss_pred cCCCccceeEEEE--cCCCCCEEEEEe-----CCCeEEEEEcCCcEE---EEe--cCCc----c---c------CcCEEE
Q psy8448 276 LGASDIAVNSIHL--LPKNTEHFVVCN-----KTNTVVIMNMQGQIV---RSL--SSGK----R---E------GGDFLC 330 (482)
Q Consensus 276 ~~~~~~~v~~i~~--~~~~~~~l~~~~-----~d~~i~i~d~~~~~~---~~~--~~~~----~---~------~~~v~~ 330 (482)
- ........+.| +|++...++++- .+++|.+|..++... ..+ .... . . ......
T Consensus 247 g-~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~ 325 (462)
T 2ece_A 247 G-EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD 325 (462)
T ss_dssp C-TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCC
T ss_pred C-CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeE
Confidence 1 12233445655 999955555555 677888877632211 111 1100 0 0 134678
Q ss_pred EEEcCCCCEEEEEeC-CcEEEEEeeh
Q psy8448 331 CTTSPRGEWIYCVGE-DMVLVVRLIQ 355 (482)
Q Consensus 331 ~~~~~~g~~l~~~~~-dg~i~iw~~~ 355 (482)
+.+++||++|+++.. .+.|.+|++.
T Consensus 326 I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 326 IDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp EEECTTSCEEEEEETTTTEEEEEECS
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEec
Confidence 999999999998776 6889966653
No 226
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.30 E-value=1.7e-10 Score=105.03 Aligned_cols=220 Identities=16% Similarity=0.098 Sum_probs=145.6
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy8448 100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKI 179 (482)
Q Consensus 100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~ 179 (482)
...+.++...+++.+ ..++.+ |..+|. +++....+.... .......+. +..+..++.++.+..+|.
T Consensus 59 ~~~~~~~~~~~~g~l-~v~t~~--l~~~d~-~g~~~~~~~~~~--------~~~~~~~~~--~~~l~v~t~~~~l~~~d~ 124 (330)
T 3hxj_A 59 EIIECRPSIGKDGTI-YFGSDK--VYAINP-DGTEKWRFDTKK--------AIVSDFTIF--EDILYVTSMDGHLYAINT 124 (330)
T ss_dssp GEEEECCEETTTTEE-CCSSCE--EEEECC-CGGGGGGSCC-------------CCEEEE--TTEEEEECTTSEEEEECT
T ss_pred CCcccceEEecCCcE-EEecCc--EEEECC-CCcEEEEEECCC--------CcccCceEE--CCEEEEEecCCEEEEEcC
Confidence 344577777777754 445444 888885 565544333221 111222222 456788888999999998
Q ss_pred CCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcE
Q psy8448 180 ATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTV 259 (482)
Q Consensus 180 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i 259 (482)
. ++...... .....+.++...+++. +.+++.++.|..+|.. ++....+......+.++...+++... .++ +.|
T Consensus 125 ~-g~~~~~~~-~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~-v~t--~~l 197 (330)
T 3hxj_A 125 D-GTEKWRFK-TKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIY-FGS--DKV 197 (330)
T ss_dssp T-SCEEEEEE-CSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEE-EES--SSE
T ss_pred C-CCEEEEEc-CCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEE-EEe--CEE
Confidence 8 77666653 3444456667766665 6778888999999998 88777776666677788888888744 444 779
Q ss_pred EEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCE
Q psy8448 260 KMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEW 339 (482)
Q Consensus 260 ~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~ 339 (482)
..+| .+++....+. .....+.++...+++ .+.+++.++.+..++.+++.+..+... ...+..+.+.+++ .
T Consensus 198 ~~~d-~~g~~~~~~~---~~~~~~~~~~~~~~g--~l~v~t~~~gl~~~~~~g~~~~~~~~~---~~~~~~~~~~~~g-~ 267 (330)
T 3hxj_A 198 YAIN-PDGTEKWNFY---AGYWTVTRPAISEDG--TIYVTSLDGHLYAINPDGTEKWRFKTG---KRIESSPVIGNTD-T 267 (330)
T ss_dssp EEEC-TTSCEEEEEC---CSSCCCSCCEECTTS--CEEEEETTTEEEEECTTSCEEEEEECS---SCCCSCCEECTTS-C
T ss_pred EEEC-CCCcEEEEEc---cCCcceeceEECCCC--eEEEEcCCCeEEEECCCCCEeEEeeCC---CCccccceEcCCC-e
Confidence 9999 7777665554 334567788888775 466677788888888877777666543 2223345555555 5
Q ss_pred EEEEeCCcEEE
Q psy8448 340 IYCVGEDMVLV 350 (482)
Q Consensus 340 l~~~~~dg~i~ 350 (482)
|..++.+|.++
T Consensus 268 l~v~t~~ggl~ 278 (330)
T 3hxj_A 268 IYFGSYDGHLY 278 (330)
T ss_dssp EEEECTTCEEE
T ss_pred EEEecCCCCEE
Confidence 66788888888
No 227
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.28 E-value=1.6e-09 Score=108.20 Aligned_cols=241 Identities=12% Similarity=0.144 Sum_probs=156.1
Q ss_pred CCEEEEEeCCCeEEEEecCCCceeeccccc-cccc-cccccccEEEEEEcCCCCEEEEEe------CCCcEEEEEcCCCe
Q psy8448 112 GQYLITGSVDGFIEVWNFTTGKIRKDLKYQ-AQDN-FMLMEEAVMSLAYSRDSEMLASGS------QSGKVKIWKIATGQ 183 (482)
Q Consensus 112 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~~~-~~~h~~~i~~l~~~~~~~~l~~~~------~dg~i~iwd~~~~~ 183 (482)
+..++.++.|+.|..+|..+|+.+-..... .... ......++. .++ .+++++ .+|.|..||..+|+
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v-----~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~ 194 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRV-----VNG-KVVIGNGGAEFGVRGYVTAYDAETGK 194 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEE-----ETT-EEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEE-----ECC-EEEEEeCCCccCCCCEEEEEECCCCc
Confidence 567888889999999999999987665442 1100 000011111 144 444443 36899999999999
Q ss_pred EeEEeecccC------------------------------CCeEEEEEccCCCEEEEEECCCe-----------------
Q psy8448 184 CLRKLEKAHS------------------------------LGVTCIQFSRDNSQILTASFDTY----------------- 216 (482)
Q Consensus 184 ~~~~~~~~~~------------------------------~~v~~i~~~~~~~~l~~~~~dg~----------------- 216 (482)
.+..+..... .....+++.|++..++++..++.
T Consensus 195 ~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~ 274 (689)
T 1yiq_A 195 EAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFL 274 (689)
T ss_dssp EEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTT
T ss_pred EEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceee
Confidence 9887742110 01125788888889999887764
Q ss_pred --EEEEeCCCCceEEEeec--cc-------cceeEEEEcCCCC---EEEEEeCCCcEEEEECCCCceeeeeeccC-----
Q psy8448 217 --VRIHGLKSGKMLKEFRG--HS-------SFVNDITFTADGH---SVLSASSDGTVKMWNLKTTECTSTFKSLG----- 277 (482)
Q Consensus 217 --i~i~d~~~~~~~~~~~~--~~-------~~i~~l~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----- 277 (482)
|..+|.++++.+..+.. |. .++.......+|+ .++.++.+|.++++|.++++.+.......
T Consensus 275 ~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~ 354 (689)
T 1yiq_A 275 SSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTK 354 (689)
T ss_dssp TEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred eeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccccccccc
Confidence 99999999999887764 21 1122222223554 78889999999999999999874432110
Q ss_pred --------------------CC-----------ccceeEEEEcCCCCCEEEEEeC-------------------------
Q psy8448 278 --------------------AS-----------DIAVNSIHLLPKNTEHFVVCNK------------------------- 301 (482)
Q Consensus 278 --------------------~~-----------~~~v~~i~~~~~~~~~l~~~~~------------------------- 301 (482)
.. ......++++|+. .++++...
T Consensus 355 ~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~-~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g 433 (689)
T 1yiq_A 355 GMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT-GLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLG 433 (689)
T ss_dssp EEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT-TEEEEEEEECCEEEECCSSCCCCCSCTTSCCCS
T ss_pred ccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC-CEEEEeccccceeeeeccccccccccccccccC
Confidence 00 0011236788877 56665421
Q ss_pred --------------------CCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhh
Q psy8448 302 --------------------TNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKE 360 (482)
Q Consensus 302 --------------------d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~ 360 (482)
+|.|..||+ +++.+-.+..+. +.....+...+.+++.|+.||.++
T Consensus 434 ~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~----~~~~g~~~tagglvf~gt~dg~l~---------- 499 (689)
T 1yiq_A 434 LRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT----IFNGGTLSTAGNLVFEGSADGRVI---------- 499 (689)
T ss_dssp SEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS----SCCCCEEEETTTEEEEECTTSEEE----------
T ss_pred ccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC----CccCccceECCCEEEEECCCCcEE----------
Confidence 377999999 688777665432 223335556788999999999999
Q ss_pred hcccccceeeeecccceeecc
Q psy8448 361 SNLMKTLQCLQEETGVSLNTV 381 (482)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~ 381 (482)
.||..+|+.+...
T Consensus 500 --------a~D~~tG~~lw~~ 512 (689)
T 1yiq_A 500 --------AYAADTGEKLWEQ 512 (689)
T ss_dssp --------EEETTTCCEEEEE
T ss_pred --------EEECCCCccceee
Confidence 7777777544433
No 228
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.28 E-value=5.4e-09 Score=96.99 Aligned_cols=226 Identities=12% Similarity=0.097 Sum_probs=142.2
Q ss_pred CCEEEEEeCCCeEEEEecCCCceeeccccccccccccc-cccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeec
Q psy8448 112 GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLM-EEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEK 190 (482)
Q Consensus 112 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h-~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 190 (482)
+..+++++.++.|..+|..+++..-............. ...+.+. ...++..+++++.++.|..+|..+++.+.....
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 56788888889999999999987765544321000000 1122211 122456788888999999999999998877632
Q ss_pred ccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccce-----eEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy8448 191 AHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFV-----NDITFTADGHSVLSASSDGTVKMWNLK 265 (482)
Q Consensus 191 ~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i-----~~l~~~~~~~~l~~~~~dg~i~i~d~~ 265 (482)
. ......... .+..+++++.++.|..+|.++++.+..+....... ...... +..+++++.++.|..+|..
T Consensus 132 ~-~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~ 206 (376)
T 3q7m_A 132 A-GEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLME 206 (376)
T ss_dssp S-SCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETT
T ss_pred C-CceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECC
Confidence 2 211111122 24578888899999999999999887766432211 112222 4567888889999999999
Q ss_pred CCceeeeeeccCCCcc----c---e-eEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCC
Q psy8448 266 TTECTSTFKSLGASDI----A---V-NSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPR 336 (482)
Q Consensus 266 ~~~~~~~~~~~~~~~~----~---v-~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~ 336 (482)
+++............. . + ..... .+ ..+++++.++.+..+|. +|+.+...... ....+.. +
T Consensus 207 tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~-~~v~~~~~~g~l~~~d~~tG~~~w~~~~~-----~~~~~~~--~ 276 (376)
T 3q7m_A 207 QGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VN-GVVFALAYNGNLTALDLRSGQIMWKRELG-----SVNDFIV--D 276 (376)
T ss_dssp TCCEEEEEECCC-----------CCCCCCEE--ET-TEEEEECTTSCEEEEETTTCCEEEEECCC-----CEEEEEE--E
T ss_pred CCcEEEEEecccCCCCcccccccccCCCcEE--EC-CEEEEEecCcEEEEEECCCCcEEeeccCC-----CCCCceE--E
Confidence 9988766642111000 0 0 01111 12 56778888999999999 67777665532 2334444 4
Q ss_pred CCEEEEEeCCcEEEEEe
Q psy8448 337 GEWIYCVGEDMVLVVRL 353 (482)
Q Consensus 337 g~~l~~~~~dg~i~iw~ 353 (482)
+..|+.++.++.++.++
T Consensus 277 ~~~l~~~~~~g~l~~~d 293 (376)
T 3q7m_A 277 GNRIYLVDQNDRVMALT 293 (376)
T ss_dssp TTEEEEEETTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEE
Confidence 67888889999999444
No 229
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.25 E-value=1.7e-09 Score=91.79 Aligned_cols=197 Identities=13% Similarity=0.171 Sum_probs=135.5
Q ss_pred ccceeeecCCCCcEEEEEEcCCCCEEEEEeCCC--eEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEE
Q psy8448 90 QLSKQIKFGSKSHVECARFSPDGQYLITGSVDG--FIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLAS 167 (482)
Q Consensus 90 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~ 167 (482)
+..+........-...+.|+ ++.++.+.+.+| .|+++|+.+++....+.... ........++++.|..
T Consensus 32 ~vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~---------~~FgeGit~~g~~ly~ 101 (262)
T 3nol_A 32 QIVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK---------RYFGEGISDWKDKIVG 101 (262)
T ss_dssp EEEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT---------TCCEEEEEEETTEEEE
T ss_pred EEEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC---------ccceeEEEEeCCEEEE
Confidence 44444444444556889998 676667776665 89999999999988776542 2222222233555555
Q ss_pred Ee-CCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeecc--c---cceeEE
Q psy8448 168 GS-QSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGH--S---SFVNDI 241 (482)
Q Consensus 168 ~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~---~~i~~l 241 (482)
.. .++.+.++|..+.+.+.++..... ...+.++++.|+.+..++.|.++|..+.+.+..+.-. . ..++.+
T Consensus 102 ltw~~~~v~v~D~~t~~~~~ti~~~~e----G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNEL 177 (262)
T 3nol_A 102 LTWKNGLGFVWNIRNLRQVRSFNYDGE----GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNEL 177 (262)
T ss_dssp EESSSSEEEEEETTTCCEEEEEECSSC----CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEE
T ss_pred EEeeCCEEEEEECccCcEEEEEECCCC----ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcccccccee
Confidence 54 688999999999999998854321 1233457777887777889999999999988876532 2 234567
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccC---------CCccceeEEEEcCCCCCEEEEEeC
Q psy8448 242 TFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLG---------ASDIAVNSIHLLPKNTEHFVVCNK 301 (482)
Q Consensus 242 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------~~~~~v~~i~~~~~~~~~l~~~~~ 301 (482)
.|. +|+..+..-.+..|.+.|.++++.+..+.... ....-.+.|+++|++..++++|-.
T Consensus 178 e~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 178 EWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred EEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 776 67655555568899999999999888876421 112356899999998555555543
No 230
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.25 E-value=6e-10 Score=101.58 Aligned_cols=224 Identities=11% Similarity=0.038 Sum_probs=142.6
Q ss_pred eEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe----------CCCcEEEEEcCCCeEeEEeeccc
Q psy8448 123 FIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS----------QSGKVKIWKIATGQCLRKLEKAH 192 (482)
Q Consensus 123 ~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~ 192 (482)
+|.+.|..+++.+.++.... .+ .+.++|++++++++. .++.|.+||+.+++.+..+..+.
T Consensus 47 ~vsvID~~t~~v~~~i~vG~--------~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~ 116 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAF--------LS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPD 116 (368)
T ss_dssp EEEEEETTTTEEEEEEEECT--------TC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETT
T ss_pred eEEEEECCCCeEEEEEeCCC--------CC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCC
Confidence 88999999999988877652 34 799999999999886 36789999999999998884321
Q ss_pred ------CCCeEEEEEccCCCEEEEEEC--CCeEEE--EeCCCCceEEEeeccc------------------cceeEEEE-
Q psy8448 193 ------SLGVTCIQFSRDNSQILTASF--DTYVRI--HGLKSGKMLKEFRGHS------------------SFVNDITF- 243 (482)
Q Consensus 193 ------~~~v~~i~~~~~~~~l~~~~~--dg~i~i--~d~~~~~~~~~~~~~~------------------~~i~~l~~- 243 (482)
......++++|||++++++.. +..|.+ +|+.+ +..+.... +.+..+..
T Consensus 117 ~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~ 193 (368)
T 1mda_H 117 APRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLA 193 (368)
T ss_dssp SCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECC
T ss_pred ccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECc
Confidence 123567899999999999875 457888 88865 22221100 00000000
Q ss_pred -------------------------cCCCCEEEEEeCCCcEEEEECCCCc--eeeeeeccC-------CCccceeEEEEc
Q psy8448 244 -------------------------TADGHSVLSASSDGTVKMWNLKTTE--CTSTFKSLG-------ASDIAVNSIHLL 289 (482)
Q Consensus 244 -------------------------~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~-------~~~~~v~~i~~~ 289 (482)
.+++..++..+. +.+.+.|+.... .+..+.... ........++++
T Consensus 194 ~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s 272 (368)
T 1mda_H 194 AAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL 272 (368)
T ss_dssp SSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEE
T ss_pred cccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEc
Confidence 223333333334 566666665422 122221000 001111226899
Q ss_pred CCCCCEEEEEe---C-----CCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCE-EEEEe-CCcEEEEEeehhhh
Q psy8448 290 PKNTEHFVVCN---K-----TNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEW-IYCVG-EDMVLVVRLIQQYL 358 (482)
Q Consensus 290 ~~~~~~l~~~~---~-----d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~-l~~~~-~dg~i~iw~~~~~~ 358 (482)
|++..++++.. . ++.+.++|. +.+.+..+..+ .....++|+|||+. +++.. .++.|.
T Consensus 273 ~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg----~~p~gi~~s~Dg~~l~va~~~~~~~Vs-------- 340 (368)
T 1mda_H 273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG----HDSDAIIAAQDGASDNYANSAGTEVLD-------- 340 (368)
T ss_dssp TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE----EEECEEEECCSSSCEEEEEETTTTEEE--------
T ss_pred CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC----CCcceEEECCCCCEEEEEccCCCCeEE--------
Confidence 99855555444 2 245669999 67777777643 25788999999984 55566 589999
Q ss_pred hhhcccccceeeeecccceeeccc
Q psy8448 359 KESNLMKTLQCLQEETGVSLNTVD 382 (482)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~ 382 (482)
++|+.+++.+.++.
T Consensus 341 ----------VID~~t~kvv~~I~ 354 (368)
T 1mda_H 341 ----------IYDAASDQDQSSVE 354 (368)
T ss_dssp ----------EEESSSCEEEEECC
T ss_pred ----------EEECCCCcEEEEEE
Confidence 77777776666654
No 231
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.24 E-value=3.4e-12 Score=117.94 Aligned_cols=204 Identities=14% Similarity=0.107 Sum_probs=113.8
Q ss_pred CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeec
Q psy8448 111 DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEK 190 (482)
Q Consensus 111 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 190 (482)
++..+++++.||.|+.||..+|+....+... .+.+..+..++..+++++.||.|+.||..+++.+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~~----------~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~ 77 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKED----------PVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPF 77 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEECC----------CSCCCC-----CCEEECTTTCCEEEC-----CCSEECSC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecCC----------CceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeec
Confidence 5778999999999999999999987665531 223333445677788888999999999999887766532
Q ss_pred ccCCCeE-EEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q psy8448 191 AHSLGVT-CIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTEC 269 (482)
Q Consensus 191 ~~~~~v~-~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 269 (482)
.....+. +..+. .+..+++++.++.|+.||.++|+.+..+..+. ...++|++..+++++.++.|..||.++++.
T Consensus 78 ~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 78 TIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTREL 152 (369)
T ss_dssp CHHHHHTTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSC
T ss_pred cCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCE
Confidence 1111110 00111 34567888889999999999999888776543 234567888899999999999999999987
Q ss_pred eeeeeccCCCccceeEEEEcCCC--CCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEE-EEEEcCCCC
Q psy8448 270 TSTFKSLGASDIAVNSIHLLPKN--TEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFL-CCTTSPRGE 338 (482)
Q Consensus 270 ~~~~~~~~~~~~~v~~i~~~~~~--~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~-~~~~~~~g~ 338 (482)
+..+.. . ......+.++. ...+++++.++.++.||. +|+.+..... ..++. ..+++++|.
T Consensus 153 ~W~~~~---~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~----~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 153 RWNATY---F--DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY----ASPVVAFYVWQREGL 216 (369)
T ss_dssp CCEEEE---E--EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC----SSCEEEEEECTTSSC
T ss_pred EEeEec---c--cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC----CCceEEEEEecCCce
Confidence 666541 1 11222233321 135777889999999999 6877766653 23333 334455554
No 232
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.24 E-value=1.5e-09 Score=108.42 Aligned_cols=239 Identities=12% Similarity=0.107 Sum_probs=149.4
Q ss_pred CCEEEEEeCCCeEEEEecCCCceeeccccccccccccc-c-ccE-EEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEe
Q psy8448 112 GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLM-E-EAV-MSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKL 188 (482)
Q Consensus 112 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h-~-~~i-~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 188 (482)
+..|++++.++.|..+|..+|+.+-.+..........+ . ..+ ..+++ .+..+++++.|+.|..+|.++|+.+..+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 55777778889999999999998876654322110000 0 000 11122 3567888999999999999999998887
Q ss_pred ecc-cCCCeEEEEEcc---CCCEEEEEE------CCCeEEEEeCCCCceEEEeeccc-----------------------
Q psy8448 189 EKA-HSLGVTCIQFSR---DNSQILTAS------FDTYVRIHGLKSGKMLKEFRGHS----------------------- 235 (482)
Q Consensus 189 ~~~-~~~~v~~i~~~~---~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~----------------------- 235 (482)
... +......+..+| ++ .++++. .++.|+.||.++++.+..+....
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred cCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 533 211111111112 44 455543 36899999999999887765210
Q ss_pred --------cceeEEEEcCCCCEEEEEeCCCc-------------------EEEEECCCCceeeeeeccCC------Cccc
Q psy8448 236 --------SFVNDITFTADGHSVLSASSDGT-------------------VKMWNLKTTECTSTFKSLGA------SDIA 282 (482)
Q Consensus 236 --------~~i~~l~~~~~~~~l~~~~~dg~-------------------i~i~d~~~~~~~~~~~~~~~------~~~~ 282 (482)
.....++++|+...++.++.++. |..+|.++++.+-.++.... ...+
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 306 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH 306 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence 01125788998899999887763 99999999998877763211 0111
Q ss_pred eeEEEEcCCCC--CEEEEEeCCCeEEEEEc-CCcEEEEecCCcc-------------------------cC---------
Q psy8448 283 VNSIHLLPKNT--EHFVVCNKTNTVVIMNM-QGQIVRSLSSGKR-------------------------EG--------- 325 (482)
Q Consensus 283 v~~i~~~~~~~--~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~-------------------------~~--------- 325 (482)
..-.....+|. ..++.++.+|.++++|. +|+.+........ ..
T Consensus 307 ~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~ 386 (689)
T 1yiq_A 307 MILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFW 386 (689)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTT
T ss_pred cEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcc
Confidence 11122222331 37888999999999999 7887644332110 00
Q ss_pred --cCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448 326 --GDFLCCTTSPRGEWIYCVGEDMVLVVRL 353 (482)
Q Consensus 326 --~~v~~~~~~~~g~~l~~~~~dg~i~iw~ 353 (482)
..-..++++|+...+++...+....++.
T Consensus 387 Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~ 416 (689)
T 1yiq_A 387 GAHDWQPMSYNPDTGLVYIPAHIMSAYYEH 416 (689)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCEEEEC
T ss_pred cccCCCcceECCCCCEEEEeccccceeeee
Confidence 0011378899988998888776666543
No 233
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.23 E-value=1.1e-09 Score=109.28 Aligned_cols=238 Identities=10% Similarity=0.102 Sum_probs=151.2
Q ss_pred CCEEEEEeCCCeEEEEecCCCceeeccccccccccccc---cccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEe
Q psy8448 112 GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLM---EEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKL 188 (482)
Q Consensus 112 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h---~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 188 (482)
+..|++++.++.|.-+|..+|+.+-.+........... ......+++ .+..+++++.|+.+..+|..+++.+..+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 55677777789999999999998876654422110000 000112222 3567888899999999999999999887
Q ss_pred ecccC----CCeEE-EEEccCCCEEEEEEC------CCeEEEEeCCCCceEEEeeccccc--------------------
Q psy8448 189 EKAHS----LGVTC-IQFSRDNSQILTASF------DTYVRIHGLKSGKMLKEFRGHSSF-------------------- 237 (482)
Q Consensus 189 ~~~~~----~~v~~-i~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~-------------------- 237 (482)
..... ..+.+ ... .+..+++++. ++.|+.+|.++++.+..+......
T Consensus 155 ~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~ 232 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS 232 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred cCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccccc
Confidence 53201 11111 111 2345665543 689999999999998777532111
Q ss_pred ------------eeEEEEcCCCCEEEEEeCCC-------------------cEEEEECCCCceeeeeeccCCC------c
Q psy8448 238 ------------VNDITFTADGHSVLSASSDG-------------------TVKMWNLKTTECTSTFKSLGAS------D 280 (482)
Q Consensus 238 ------------i~~l~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~~~~------~ 280 (482)
...++++|++..++.++.++ .|..+|.++++.+..++..... .
T Consensus 233 g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~ 312 (677)
T 1kb0_A 233 GKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTST 312 (677)
T ss_dssp GCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred CceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccC
Confidence 13578899999898887664 4999999999988777632110 1
Q ss_pred cceeEEEEcCCCC--CEEEEEeCCCeEEEEEc-CCcEEEEecCCccc--------CcCE---------------------
Q psy8448 281 IAVNSIHLLPKNT--EHFVVCNKTNTVVIMNM-QGQIVRSLSSGKRE--------GGDF--------------------- 328 (482)
Q Consensus 281 ~~v~~i~~~~~~~--~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~--------~~~v--------------------- 328 (482)
....-+....+|. ..++.++.+|.++++|. +|+.+..+...... ..++
T Consensus 313 ~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~ 392 (677)
T 1kb0_A 313 QPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGA 392 (677)
T ss_dssp SCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCS
T ss_pred CCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccc
Confidence 1112222333442 57888999999999999 68887666432100 0001
Q ss_pred ---EEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448 329 ---LCCTTSPRGEWIYCVGEDMVLVVRL 353 (482)
Q Consensus 329 ---~~~~~~~~g~~l~~~~~dg~i~iw~ 353 (482)
..++++|++.++++...+-...++.
T Consensus 393 ~~w~~~a~dp~~~~~yv~~~~~~~~~~~ 420 (677)
T 1kb0_A 393 HNWHPMSFNPQTGLVYLPAQNVPVNLMD 420 (677)
T ss_dssp SCSSCCEEETTTTEEEEEEEECCCEEEE
T ss_pred cCCCCceEcCCCCEEEEeChhcceeeec
Confidence 1468889988888877665555443
No 234
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.23 E-value=1.2e-08 Score=85.88 Aligned_cols=200 Identities=9% Similarity=0.079 Sum_probs=136.4
Q ss_pred ccceeeecCCCCcEEEEEEcCCCCEEEEEeCC--CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEE
Q psy8448 90 QLSKQIKFGSKSHVECARFSPDGQYLITGSVD--GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLAS 167 (482)
Q Consensus 90 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~ 167 (482)
+..+...+....-...+.|++ +.++.+.+.+ ..|+.+|+.+++....+..... ..-..++.. ++.|..
T Consensus 10 ~v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-------~fgeGi~~~--~~~ly~ 79 (243)
T 3mbr_X 10 RVVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-------YFGAGIVAW--RDRLIQ 79 (243)
T ss_dssp EEEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-------CCEEEEEEE--TTEEEE
T ss_pred EEEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-------cceeEEEEe--CCEEEE
Confidence 444444444456677999986 5555666654 4899999999999887765431 111233333 444444
Q ss_pred E-eCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccc-----cceeEE
Q psy8448 168 G-SQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHS-----SFVNDI 241 (482)
Q Consensus 168 ~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~i~~l 241 (482)
. -.++.+.++|..+.+.+.++..+. . -..++ +++..|+.+..++.|.++|..+.+.+.++.-.. ..++.+
T Consensus 80 ltw~~~~v~v~D~~tl~~~~ti~~~~-~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeL 155 (243)
T 3mbr_X 80 LTWRNHEGFVYDLATLTPRARFRYPG-E-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNEL 155 (243)
T ss_dssp EESSSSEEEEEETTTTEEEEEEECSS-C-CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred EEeeCCEEEEEECCcCcEEEEEeCCC-C-ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceee
Confidence 4 478899999999999999985432 2 23343 577778877778999999999999887775321 245667
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccC----------CCccceeEEEEcCCCCCEEEEEeCCCe
Q psy8448 242 TFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLG----------ASDIAVNSIHLLPKNTEHFVVCNKTNT 304 (482)
Q Consensus 242 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----------~~~~~v~~i~~~~~~~~~l~~~~~d~~ 304 (482)
.+. +|+..+..-.+..|.+.|.++++.+..+.... ....-.+.|+++|++..++++|-.=..
T Consensus 156 e~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~ 227 (243)
T 3mbr_X 156 EWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPM 227 (243)
T ss_dssp EEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSE
T ss_pred EEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCc
Confidence 766 66655555567899999999999888776321 122456899999998666666644333
No 235
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.20 E-value=1.3e-08 Score=86.29 Aligned_cols=198 Identities=11% Similarity=0.096 Sum_probs=137.5
Q ss_pred ccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEE-E
Q psy8448 90 QLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLAS-G 168 (482)
Q Consensus 90 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~-~ 168 (482)
+..+.+...-+.-...+.|+ ++.+.++.+.+|.|+++|+++++....+ .... ..-..+++. ++.|.. .
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~-------~FgeGit~~--g~~Ly~lt 112 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGN-------IFAEGLASD--GERLYQLT 112 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTT-------CCEEEEEEC--SSCEEEEE
T ss_pred EEEEEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCC-------cceeEEEEe--CCEEEEEE
Confidence 34444444445556789998 4566677788899999999999988777 4321 112234444 444444 4
Q ss_pred eCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeec--ccc---ceeEEEE
Q psy8448 169 SQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRG--HSS---FVNDITF 243 (482)
Q Consensus 169 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~---~i~~l~~ 243 (482)
-.++.+.+||..+.+.+.++..... -..++ ++++.|+.+..++.|.++|.++.+.+..+.- +.. .++.+.|
T Consensus 113 w~~~~v~V~D~~Tl~~~~ti~~~~e--GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~ 188 (268)
T 3nok_A 113 WTEGLLFTWSGMPPQRERTTRYSGE--GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELEC 188 (268)
T ss_dssp SSSCEEEEEETTTTEEEEEEECSSC--CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred ccCCEEEEEECCcCcEEEEEeCCCc--eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEE
Confidence 4688999999999999999854322 23333 5788888887899999999999998887753 222 3467777
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeeeeeccC----------CCccceeEEEEcCCCCCEEEEEeCCC
Q psy8448 244 TADGHSVLSASSDGTVKMWNLKTTECTSTFKSLG----------ASDIAVNSIHLLPKNTEHFVVCNKTN 303 (482)
Q Consensus 244 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----------~~~~~v~~i~~~~~~~~~l~~~~~d~ 303 (482)
. +|+..+..-.+..|.+.|.++++.+..+.... ....-.+.|++.|++..++++|-.=.
T Consensus 189 ~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp 257 (268)
T 3nok_A 189 A-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWP 257 (268)
T ss_dssp E-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCS
T ss_pred e-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCC
Confidence 7 67655555568899999999999888776321 12245689999999877777765433
No 236
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.20 E-value=5.6e-09 Score=104.11 Aligned_cols=234 Identities=11% Similarity=0.072 Sum_probs=155.1
Q ss_pred CCCEEEEEeCCCeEEEEecCCCceeeccccc-cccc-cccccccEEEEEEcCCCCEEEEEeC------CCcEEEEEcCCC
Q psy8448 111 DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQ-AQDN-FMLMEEAVMSLAYSRDSEMLASGSQ------SGKVKIWKIATG 182 (482)
Q Consensus 111 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~~~-~~~h~~~i~~l~~~~~~~~l~~~~~------dg~i~iwd~~~~ 182 (482)
++..|+.++.|+.|..+|..+|+.+-.+... .... ......++ . .+..+++++. +|.|..+|..++
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~----v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG 200 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPR----V--FKGKVIIGNGGAEYGVRGYITAYDAETG 200 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCE----E--ETTEEEECCBCTTTCCBCEEEEEETTTC
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcE----E--ECCEEEEEecccccCCCCEEEEEECCCC
Confidence 3567888889999999999999987666543 1000 00001111 1 1345555543 689999999999
Q ss_pred eEeEEeecccCC-------------------------------CeEEEEEccCCCEEEEEECCC----------------
Q psy8448 183 QCLRKLEKAHSL-------------------------------GVTCIQFSRDNSQILTASFDT---------------- 215 (482)
Q Consensus 183 ~~~~~~~~~~~~-------------------------------~v~~i~~~~~~~~l~~~~~dg---------------- 215 (482)
+.+..+...... ....++++|++..++++..++
T Consensus 201 ~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~ 280 (677)
T 1kb0_A 201 ERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNL 280 (677)
T ss_dssp CEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCT
T ss_pred cEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCe
Confidence 998877432111 113578889888888887664
Q ss_pred ---eEEEEeCCCCceEEEeec--cc-------cceeEEEEcCCC---CEEEEEeCCCcEEEEECCCCceeeeeeccCC--
Q psy8448 216 ---YVRIHGLKSGKMLKEFRG--HS-------SFVNDITFTADG---HSVLSASSDGTVKMWNLKTTECTSTFKSLGA-- 278 (482)
Q Consensus 216 ---~i~i~d~~~~~~~~~~~~--~~-------~~i~~l~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-- 278 (482)
.|..+|.++++.+..+.. |. .....+....+| ..++.++.+|.++++|.++++.+..+.....
T Consensus 281 ~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~ 360 (677)
T 1kb0_A 281 YLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNW 360 (677)
T ss_dssp TTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSS
T ss_pred eeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCc
Confidence 599999999999887763 21 122233334467 6788999999999999999998766542110
Q ss_pred ------Cccce------------------------eEEEEcCCCCCEEEEEeC---------------------------
Q psy8448 279 ------SDIAV------------------------NSIHLLPKNTEHFVVCNK--------------------------- 301 (482)
Q Consensus 279 ------~~~~v------------------------~~i~~~~~~~~~l~~~~~--------------------------- 301 (482)
...++ ..++++|++ .++++...
T Consensus 361 ~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~-~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 439 (677)
T 1kb0_A 361 ASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT-GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTG 439 (677)
T ss_dssp EEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT-TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGT
T ss_pred ccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC-CEEEEeChhcceeeecccccccccccccccccccc
Confidence 00111 256788887 56665432
Q ss_pred ----------------CCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448 302 ----------------TNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ 355 (482)
Q Consensus 302 ----------------d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~ 355 (482)
.+.|..||+ +++.+-.+... .++....+..++..++.++.||.+++||..
T Consensus 440 ~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~----~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~ 506 (677)
T 1kb0_A 440 WNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV----SPWNGGTLTTAGNVVFQGTADGRLVAYHAA 506 (677)
T ss_dssp CCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES----SSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred cccccccccccCCCCCccEEEEEeCCCCcEEeecCCC----CCCcCcceEeCCCEEEEECCCCcEEEEECC
Confidence 278999999 67777666532 233444566678899999999999955543
No 237
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.19 E-value=1.4e-09 Score=103.12 Aligned_cols=221 Identities=10% Similarity=0.100 Sum_probs=157.6
Q ss_pred CCCCEEEEEeC-CCeEEEEecCCCceeeccccccccccccccccEEEEEE-c-CCCCEEEEEe-----------------
Q psy8448 110 PDGQYLITGSV-DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAY-S-RDSEMLASGS----------------- 169 (482)
Q Consensus 110 ~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~-~-~~~~~l~~~~----------------- 169 (482)
+||++|..... ++.|.+.|+.+.+....+.... ...+..+++ + |+++++++++
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~-------g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~ 171 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPN-------AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVA 171 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSS-------CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCC-------CCCCcceeeeecCCCcEEEEecccccccCCCCccccccc
Confidence 38888877654 5679999999999777554332 245778887 5 8999998885
Q ss_pred -CCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCC---------------------------------
Q psy8448 170 -QSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDT--------------------------------- 215 (482)
Q Consensus 170 -~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg--------------------------------- 215 (482)
.++.+.++|..+.+...++..+. ....++++|+|+++++++.+.
T Consensus 172 ~~~~~vtvID~~t~~v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk 249 (595)
T 1fwx_A 172 NYVNVFTAVDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD 249 (595)
T ss_dssp GEEEEEEEEETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred ccCceEEEEECCCCeEEEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCC
Confidence 24579999999999888875322 456788999999999888553
Q ss_pred -----eEEEEeCCC--Cce-EEEeeccccceeEEEEcCCCCEEEEEe-CCCcEEEEECCCCc------------eeeeee
Q psy8448 216 -----YVRIHGLKS--GKM-LKEFRGHSSFVNDITFTADGHSVLSAS-SDGTVKMWNLKTTE------------CTSTFK 274 (482)
Q Consensus 216 -----~i~i~d~~~--~~~-~~~~~~~~~~i~~l~~~~~~~~l~~~~-~dg~i~i~d~~~~~------------~~~~~~ 274 (482)
.|.+.|.++ ++. +..+.. .....++.++|||+++++++ .+.+|.++|+.+.+ .....
T Consensus 250 ~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v- 327 (595)
T 1fwx_A 250 YQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP- 327 (595)
T ss_dssp SEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-
T ss_pred eeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-
Confidence 367777776 444 444442 33567899999999888776 57889999998653 12222
Q ss_pred ccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-C----------CcEEEEecCCcccCcCE--EEEEEcCCCCEEE
Q psy8448 275 SLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-Q----------GQIVRSLSSGKREGGDF--LCCTTSPRGEWIY 341 (482)
Q Consensus 275 ~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~----------~~~~~~~~~~~~~~~~v--~~~~~~~~g~~l~ 341 (482)
.-......++|+|+| ..+++.-.|++|..||+ . .+.+.++..+....... ....++|||++|+
T Consensus 328 ---~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~ 403 (595)
T 1fwx_A 328 ---ELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLV 403 (595)
T ss_dssp ---BCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEE
T ss_pred ---CCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEE
Confidence 223456889999999 78888889999999998 3 35666666542111000 1235689999999
Q ss_pred EEeC
Q psy8448 342 CVGE 345 (482)
Q Consensus 342 ~~~~ 345 (482)
+...
T Consensus 404 ~~Nk 407 (595)
T 1fwx_A 404 CLSK 407 (595)
T ss_dssp EEES
T ss_pred EcCC
Confidence 8764
No 238
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.17 E-value=1.9e-09 Score=98.25 Aligned_cols=220 Identities=10% Similarity=0.008 Sum_probs=140.2
Q ss_pred ccceeeecCCCCcEEEEEEcCCCCEEEEEe----------CCCeEEEEecCCCceeeccccccccccccccccEEEEEEc
Q psy8448 90 QLSKQIKFGSKSHVECARFSPDGQYLITGS----------VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYS 159 (482)
Q Consensus 90 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~ 159 (482)
+...++..+.. + .+.++||+++++++. .++.|.+||+.+++...++.......+. .-.....++++
T Consensus 57 ~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~-~g~~P~~ia~S 132 (368)
T 1mda_H 57 VTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS-VGPRVHIIGNC 132 (368)
T ss_dssp EEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC-BSCCTTSEEEC
T ss_pred eEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccc-cCCCcceEEEc
Confidence 34445555654 4 799999999998886 3688999999999998887653110000 00235578999
Q ss_pred CCCCEEEEEeC--CCcEEE--EEcCCCeEeEEeeccc-----------------CCCeEEEEE-----------------
Q psy8448 160 RDSEMLASGSQ--SGKVKI--WKIATGQCLRKLEKAH-----------------SLGVTCIQF----------------- 201 (482)
Q Consensus 160 ~~~~~l~~~~~--dg~i~i--wd~~~~~~~~~~~~~~-----------------~~~v~~i~~----------------- 201 (482)
|||++++++.. +..+.+ +|..+ +..+..+. .+.+..+..
T Consensus 133 pDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~ 209 (368)
T 1mda_H 133 ASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGA 209 (368)
T ss_dssp TTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTT
T ss_pred CCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeee
Confidence 99999999874 456888 88865 22221100 000000000
Q ss_pred ---------ccCCCEEEEEECCCeEEEEeCCCCc--eEEEeec-------c---ccceeEEEEcCCCCEEEEEeC-----
Q psy8448 202 ---------SRDNSQILTASFDTYVRIHGLKSGK--MLKEFRG-------H---SSFVNDITFTADGHSVLSASS----- 255 (482)
Q Consensus 202 ---------~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~-------~---~~~i~~l~~~~~~~~l~~~~~----- 255 (482)
.+++..++..+. +.|.+.|..... .+..+.. + ......++++|+++.++++..
T Consensus 210 i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~ 288 (368)
T 1mda_H 210 QNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRS 288 (368)
T ss_dssp SCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSC
T ss_pred eeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCc
Confidence 223333333334 666667765432 1221110 0 011122789999998887643
Q ss_pred ----CCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEe-CCCeEEEEEc-CCcEEEEecCC
Q psy8448 256 ----DGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCN-KTNTVVIMNM-QGQIVRSLSSG 321 (482)
Q Consensus 256 ----dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-~d~~i~i~d~-~~~~~~~~~~~ 321 (482)
++.+.++|+.+.+.+..+.. ......++++|++..++++.. .++.|.++|+ +++.+..+..+
T Consensus 289 ~~~~~~~~~ViD~~t~~vv~~i~v----g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg 356 (368)
T 1mda_H 289 CLAAAENTSSVTASVGQTSGPISN----GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD 356 (368)
T ss_dssp TTSCEEEEEEEESSSCCEEECCEE----EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred ccccCCCEEEEECCCCeEEEEEEC----CCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC
Confidence 23567999999998888752 236789999999966788888 6999999999 68888888764
No 239
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.16 E-value=1.1e-07 Score=83.40 Aligned_cols=226 Identities=11% Similarity=0.059 Sum_probs=137.4
Q ss_pred CCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCeEeEEeec
Q psy8448 112 GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS-QSGKVKIWKIATGQCLRKLEK 190 (482)
Q Consensus 112 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~ 190 (482)
|++|+.+.. +.|+.+++....... +.... .+......+..++|++++..|+.+. .++.|..+++..+.....+ .
T Consensus 1 ~~~l~~~~~-~~I~~~~~~g~~~~~-~~~~~--~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~-~ 75 (267)
T 1npe_A 1 GTHLLFAQT-GKIERLPLERNTMKK-TEAKA--FLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII-R 75 (267)
T ss_dssp CEEEEEEEE-EEEEEEEESSSCBCG-GGCEE--EEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE-C
T ss_pred CcEEEEEcC-CeEEEEEecCccccc-cccee--eecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE-E
Confidence 345555553 578888887654211 10000 0000124578999999766666554 5689999998765443333 2
Q ss_pred ccCCCeEEEEEccCCCEEEEEE-CCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeC---CCcEEEEECCC
Q psy8448 191 AHSLGVTCIQFSRDNSQILTAS-FDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASS---DGTVKMWNLKT 266 (482)
Q Consensus 191 ~~~~~v~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~---dg~i~i~d~~~ 266 (482)
........+++++++..|+.+. ..+.|.++++..................++++|++..|+.+.. .+.|..+++..
T Consensus 76 ~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg 155 (267)
T 1npe_A 76 QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG 155 (267)
T ss_dssp TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS
T ss_pred CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC
Confidence 2234678999999766666554 5678999998654322222222245789999997666666554 36788888764
Q ss_pred CceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEe-C
Q psy8448 267 TECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVG-E 345 (482)
Q Consensus 267 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~-~ 345 (482)
.. ...+.. ........++++|++..++++....+.|..++..+.....+... ......++.. +..|+.+. .
T Consensus 156 ~~-~~~~~~--~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~---~~~P~gi~~d--~~~lyva~~~ 227 (267)
T 1npe_A 156 TN-RRILAQ--DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG---LQYPFAVTSY--GKNLYYTDWK 227 (267)
T ss_dssp CC-CEEEEC--TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC---CCSEEEEEEE--TTEEEEEETT
T ss_pred CC-cEEEEE--CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC---CCCceEEEEe--CCEEEEEECC
Confidence 32 222221 12235688999998756667777788999999976544444322 2233566654 45555554 5
Q ss_pred CcEEE
Q psy8448 346 DMVLV 350 (482)
Q Consensus 346 dg~i~ 350 (482)
++.|.
T Consensus 228 ~~~v~ 232 (267)
T 1npe_A 228 TNSVI 232 (267)
T ss_dssp TTEEE
T ss_pred CCeEE
Confidence 57887
No 240
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.15 E-value=2e-08 Score=86.46 Aligned_cols=193 Identities=10% Similarity=0.064 Sum_probs=134.2
Q ss_pred cEEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEE-ECCCeEEEEeCCCCceE
Q psy8448 152 AVMSLAYSRDSEMLASGSQ--SGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTA-SFDTYVRIHGLKSGKML 228 (482)
Q Consensus 152 ~i~~l~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~ 228 (482)
....+.|++++.+.++.+. ++.|.++|+.+++.+..+..+.......+++. +..|+.+ -.++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 4689999998754444443 57999999999999888743332233345554 4455544 45789999999999999
Q ss_pred EEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCcc---ceeEEEEcCCCCCEEEEEeCCCeE
Q psy8448 229 KEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDI---AVNSIHLLPKNTEHFVVCNKTNTV 305 (482)
Q Consensus 229 ~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~v~~i~~~~~~~~~l~~~~~d~~i 305 (482)
.++...... ...+++|++.++++..++.|.++|..+.+....+..-. ... .++.+.|. ++ .+++....++.|
T Consensus 100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~-~~~p~~~~nele~~-dg-~lyvn~~~~~~V 174 (266)
T 2iwa_A 100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKY-NGHRVIRLNELEYI-NG-EVWANIWQTDCI 174 (266)
T ss_dssp EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEE-TTEECCCEEEEEEE-TT-EEEEEETTSSEE
T ss_pred EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECC-CCcccccceeEEEE-CC-EEEEecCCCCeE
Confidence 888633111 23355677777777778999999999988887776321 112 35677877 55 566666678999
Q ss_pred EEEEc-CCcEEEEecCCcc----------cCcCEEEEEEcCCCCEEE-EEeCCcEEEE
Q psy8448 306 VIMNM-QGQIVRSLSSGKR----------EGGDFLCCTTSPRGEWIY-CVGEDMVLVV 351 (482)
Q Consensus 306 ~i~d~-~~~~~~~~~~~~~----------~~~~v~~~~~~~~g~~l~-~~~~dg~i~i 351 (482)
.+.|. +++.+..+..... .......++|+|+++.++ ++...+.++.
T Consensus 175 ~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~ 232 (266)
T 2iwa_A 175 ARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFE 232 (266)
T ss_dssp EEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred EEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEE
Confidence 99999 7888887764210 113568999999987666 4556788883
No 241
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.15 E-value=3.3e-09 Score=96.98 Aligned_cols=203 Identities=11% Similarity=0.093 Sum_probs=136.2
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeC-----CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEE-EEEe--
Q psy8448 98 GSKSHVECARFSPDGQYLITGSV-----DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEML-ASGS-- 169 (482)
Q Consensus 98 ~h~~~v~~~~~s~~~~~l~s~~~-----dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l-~~~~-- 169 (482)
+|-..+.+++++++++++++-.. ++.|.+||+.+++....+...... ..+...+..+++++++..+ ++-.
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~--~~~~~~~~~v~vd~~~g~~yvtd~~~ 141 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPI--TLSNSFVNDLAVDLIHNFVYISDPAP 141 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTT--SCTTCCCCEEEEETTTTEEEEEECCS
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhh--cccccccceEEEecCCCEEEEEcCcc
Confidence 56678999999999987776543 578999999999876655443111 1123457899999865454 4444
Q ss_pred -CCCcEEEEEcCCCeEeEEeeccc-----------------------------CCCeEEEEEccCCCEEEEEECCC-eEE
Q psy8448 170 -QSGKVKIWKIATGQCLRKLEKAH-----------------------------SLGVTCIQFSRDNSQILTASFDT-YVR 218 (482)
Q Consensus 170 -~dg~i~iwd~~~~~~~~~~~~~~-----------------------------~~~v~~i~~~~~~~~l~~~~~dg-~i~ 218 (482)
.++.|.+||+.+++..+.+ ..| ...+..++|+|+++.|+++..++ .+.
T Consensus 142 ~~~~~i~v~d~~~g~~~r~~-~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~ 220 (343)
T 2qe8_A 142 DDKAALIRVDLQTGLAARVL-QGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMY 220 (343)
T ss_dssp GGGCEEEEEETTTCCEEEEC-TTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEE
T ss_pred CCCCeEEEEECCCCCEEEEe-cCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEE
Confidence 5789999999887765544 121 12368899999999888887666 555
Q ss_pred EEeCC---CCc-----eEE--EeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEE
Q psy8448 219 IHGLK---SGK-----MLK--EFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHL 288 (482)
Q Consensus 219 i~d~~---~~~-----~~~--~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~ 288 (482)
.++.. .+. ... ...++......++++++|+++++...++.|.+||..+++....... .......++++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~--~~~~~p~~va~ 298 (343)
T 2qe8_A 221 RIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD--EKLSWTDSFNF 298 (343)
T ss_dssp EEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC--GGGSCEEEEEE
T ss_pred EEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC--CceecCCeeEE
Confidence 55532 111 000 1123344567899999999888888899999999856654333221 12345789999
Q ss_pred cCCCCCEEEEEeCCCeEE
Q psy8448 289 LPKNTEHFVVCNKTNTVV 306 (482)
Q Consensus 289 ~~~~~~~l~~~~~d~~i~ 306 (482)
.+++ .++++.+..+.+.
T Consensus 299 ~~~g-~l~v~~~~~~~~~ 315 (343)
T 2qe8_A 299 GSDG-YLYFDCNQLHHSA 315 (343)
T ss_dssp CTTS-CEEEEECCGGGSG
T ss_pred CCCC-cEEEEeCcccccc
Confidence 9987 6777776555443
No 242
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.14 E-value=5.7e-09 Score=94.86 Aligned_cols=217 Identities=16% Similarity=0.120 Sum_probs=149.2
Q ss_pred CCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecc
Q psy8448 112 GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKA 191 (482)
Q Consensus 112 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 191 (482)
+..|..++.++.|..+|.. ++........ ...+.++...+++. +..++.++.|..+|.. ++....+. .
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~--------~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~-~ 174 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTK--------KAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFK-T 174 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECS--------SCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEE-C
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCC--------CceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEe-c
Confidence 4567778888999999988 6655443322 23345556666666 6677888999999988 77766663 3
Q ss_pred cCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceee
Q psy8448 192 HSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTS 271 (482)
Q Consensus 192 ~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 271 (482)
....+.++...+++. +.+++ +.|..+| .+++....+......+.++...+++. |..++.++.|..+|. +++...
T Consensus 175 ~~~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~ 248 (330)
T 3hxj_A 175 NDAITSAASIGKDGT-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKW 248 (330)
T ss_dssp SSCCCSCCEECTTCC-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEE
T ss_pred CCCceeeeEEcCCCE-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeE
Confidence 445566777777776 44555 7899999 78877777766666788899988876 566777788888874 555555
Q ss_pred eeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEE
Q psy8448 272 TFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVV 351 (482)
Q Consensus 272 ~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~i 351 (482)
.+. .....+..+...+++ .+.+++.++.+..+|.+++.+..+... ...+.++...++|. |..++.+|.+++
T Consensus 249 ~~~---~~~~~~~~~~~~~~g--~l~v~t~~ggl~~~d~~g~~~~~~~~~---~~~~~~~~~d~~g~-l~~gt~~G~~~~ 319 (330)
T 3hxj_A 249 RFK---TGKRIESSPVIGNTD--TIYFGSYDGHLYAINPDGTEKWNFETG---SWIIATPVIDENGT-IYFGTRNGKFYA 319 (330)
T ss_dssp EEE---CSSCCCSCCEECTTS--CEEEECTTCEEEEECTTSCEEEEEECS---SCCCSCCEECTTCC-EEEECTTSCEEE
T ss_pred Eee---CCCCccccceEcCCC--eEEEecCCCCEEEECCCCcEEEEEEcC---CccccceEEcCCCE-EEEEcCCCeEEE
Confidence 554 222333445555454 577788888999999877776666543 44556677777776 566999999996
Q ss_pred Eeeh
Q psy8448 352 RLIQ 355 (482)
Q Consensus 352 w~~~ 355 (482)
...+
T Consensus 320 ~~~~ 323 (330)
T 3hxj_A 320 LFNL 323 (330)
T ss_dssp EEC-
T ss_pred Eecc
Confidence 5443
No 243
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.13 E-value=6.4e-08 Score=87.56 Aligned_cols=245 Identities=9% Similarity=0.036 Sum_probs=152.1
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccc------------cccccccccEEEEEEcC-CCCEEEE
Q psy8448 101 SHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQ------------DNFMLMEEAVMSLAYSR-DSEMLAS 167 (482)
Q Consensus 101 ~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~------------~~~~~h~~~i~~l~~~~-~~~~l~~ 167 (482)
....+++|+++++++.++..++.|..|+..+++... +..... .........+.++++.+ +++ |++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v 96 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYI 96 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCCCCc-EEE
Confidence 345678899999988888889999999987655332 111000 00001123578999998 554 555
Q ss_pred EeCCCcEEEEEcCCCeEeEEeec----ccCCCeEEEEEcc-CCCEEEEEEC-----------------CCeEEEEeCCCC
Q psy8448 168 GSQSGKVKIWKIATGQCLRKLEK----AHSLGVTCIQFSR-DNSQILTASF-----------------DTYVRIHGLKSG 225 (482)
Q Consensus 168 ~~~dg~i~iwd~~~~~~~~~~~~----~~~~~v~~i~~~~-~~~~l~~~~~-----------------dg~i~i~d~~~~ 225 (482)
+...+.|..+|..++.. ..+.. ........+++.+ +|...++-.. ++.|..+|..++
T Consensus 97 ~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp EETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred EECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 55555688888765532 22211 1123468899999 8876655432 367999998777
Q ss_pred ceEEEeeccccceeEEEEcCCCCEEEEE-eCCCcEEEEECCCCc--eeeeeeccCCCccceeEEEEcCCCCCEEEEEeC-
Q psy8448 226 KMLKEFRGHSSFVNDITFTADGHSVLSA-SSDGTVKMWNLKTTE--CTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK- 301 (482)
Q Consensus 226 ~~~~~~~~~~~~i~~l~~~~~~~~l~~~-~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~- 301 (482)
+...... .......++++|+++.|+++ +..+.|.+|++.... ....+... .. ...+++.++| .++++...
T Consensus 176 ~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~---~g-P~gi~~d~~G-~l~va~~~~ 249 (322)
T 2fp8_A 176 ETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI---PN-PGNIKRNADG-HFWVSSSEE 249 (322)
T ss_dssp EEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC---SS-EEEEEECTTS-CEEEEEEEE
T ss_pred EEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC---CC-CCCeEECCCC-CEEEEecCc
Confidence 6433222 22346789999999876665 456889999987532 11222211 12 6788999998 66666544
Q ss_pred ---------CCeEEEEEcCCcEEEEecCCccc-CcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448 302 ---------TNTVVIMNMQGQIVRSLSSGKRE-GGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ 355 (482)
Q Consensus 302 ---------d~~i~i~d~~~~~~~~~~~~~~~-~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~ 355 (482)
.+.|..+|..++.+..+...... ...+..+++ .++++.++...++.|..+++.
T Consensus 250 ~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 250 LDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp TTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred ccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence 46788888888888777643211 234556666 356555555567888855543
No 244
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.12 E-value=9e-12 Score=115.08 Aligned_cols=177 Identities=13% Similarity=0.071 Sum_probs=100.4
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeecccc-cee
Q psy8448 161 DSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSS-FVN 239 (482)
Q Consensus 161 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~i~ 239 (482)
++..+++++.||.|..||..+|+.+..+.. ..+.+..+..++..+++++.|+.|+.||.++++.+..+..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE---DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC---CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC---CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence 577899999999999999999999988843 4455555556777788888999999999999988766653321 111
Q ss_pred -EEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEE
Q psy8448 240 -DITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRS 317 (482)
Q Consensus 240 -~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~ 317 (482)
+..+. .+..+++++.++.|..||.++|+.+..+.. +. ...++|++ ..+++++.++.|+.||. +|+.+..
T Consensus 85 ~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~---~~----~~~~~p~~-~~v~~~~~dg~v~a~d~~tG~~~W~ 155 (369)
T 2hz6_A 85 ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSS---AF----ADSLSPST-SLLYLGRTEYTITMYDTKTRELRWN 155 (369)
T ss_dssp TCSCC------CCCCEEEEEEEEECCC------------------------------EEEEEEEEEEECCCSSSSSCCCE
T ss_pred cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecC---CC----cccccccC-CEEEEEecCCEEEEEECCCCCEEEe
Confidence 11111 345678888899999999999998776642 21 23455655 78888899999999998 5665444
Q ss_pred ecCCcccCcCEEEEEEcCCC---CEEEEEeCCcEEEEEee
Q psy8448 318 LSSGKREGGDFLCCTTSPRG---EWIYCVGEDMVLVVRLI 354 (482)
Q Consensus 318 ~~~~~~~~~~v~~~~~~~~g---~~l~~~~~dg~i~iw~~ 354 (482)
+... .....+++++. ..+++++.||.++.||.
T Consensus 156 ~~~~-----~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~ 190 (369)
T 2hz6_A 156 ATYF-----DYAASLPEDDVDYKMSHFVSNGDGLVVTVDS 190 (369)
T ss_dssp EEEE-----EECCBCCCCCTTCCCCEEEEETSCEEEEECT
T ss_pred Eecc-----cccCccccCCccccceEEEECCCCEEEEEEC
Confidence 3321 11223334432 56778899999996554
No 245
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=99.11 E-value=1.5e-07 Score=80.53 Aligned_cols=200 Identities=14% Similarity=0.202 Sum_probs=138.6
Q ss_pred ccccEEEEEEcCCCCEEEE-EeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCce
Q psy8448 149 MEEAVMSLAYSRDSEMLAS-GSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKM 227 (482)
Q Consensus 149 h~~~i~~l~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 227 (482)
....+..++|+|+++.|++ ...++.|...|.. ++.++.+..........+++.+++.++++.-.++.+.++++.....
T Consensus 25 ~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~ 103 (255)
T 3qqz_A 25 ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSE 103 (255)
T ss_dssp CCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCC
T ss_pred cccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCe
Confidence 3567999999997665554 6678899999987 8888777433345688899998887666666678899998765442
Q ss_pred ---EEEee------ccccceeEEEEcCCCCEEEEEeCCCcEEEEECCC---Cceeeeeec----cCCCccceeEEEEcCC
Q psy8448 228 ---LKEFR------GHSSFVNDITFTADGHSVLSASSDGTVKMWNLKT---TECTSTFKS----LGASDIAVNSIHLLPK 291 (482)
Q Consensus 228 ---~~~~~------~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~----~~~~~~~v~~i~~~~~ 291 (482)
+.... ........|+|+|.++.|+++.......+|.+.. ......+.. .......+.+++++|.
T Consensus 104 i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~ 183 (255)
T 3qqz_A 104 VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQ 183 (255)
T ss_dssp EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETT
T ss_pred eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCC
Confidence 22221 1234468999999998888877665556665541 111111110 0012345789999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCcEEEEecCCccc------CcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448 292 NTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKRE------GGDFLCCTTSPRGEWIYCVGEDMVLV 350 (482)
Q Consensus 292 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~------~~~v~~~~~~~~g~~l~~~~~dg~i~ 350 (482)
...+++.....+.+..+|.+|+.+..+.-.... ....-.++|.++|+ |+..++.+.++
T Consensus 184 tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y 247 (255)
T 3qqz_A 184 KNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFY 247 (255)
T ss_dssp TTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEE
T ss_pred CCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEE
Confidence 877888888889999999999877666543211 13567899999997 55568888777
No 246
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=99.10 E-value=3e-07 Score=82.47 Aligned_cols=229 Identities=12% Similarity=0.077 Sum_probs=143.1
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCC--cEEEEE
Q psy8448 101 SHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSG--KVKIWK 178 (482)
Q Consensus 101 ~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg--~i~iwd 178 (482)
.....++|+++++++++-..++.|..||.... ....+.. ...+..+++.++++++++..... .|..+|
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~---------~~~p~gia~~~dG~l~vad~~~~~~~v~~~d 101 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATV---------EGKVSGLAFTSNGDLVATGWNADSIPVVSLV 101 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEEC---------SSEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeC---------CCCceeEEEcCCCcEEEEeccCCcceEEEEc
Confidence 56789999999997777767899999997653 3222221 24588999999998655544322 477777
Q ss_pred cCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCce-EEEee---------ccccceeEEEEcCCCC
Q psy8448 179 IATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKM-LKEFR---------GHSSFVNDITFTADGH 248 (482)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~---------~~~~~i~~l~~~~~~~ 248 (482)
..+++...............++..+++..+++-..++.|+++|...++. +.... ..-.....+ +++++
T Consensus 102 ~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~ 179 (306)
T 2p4o_A 102 KSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGN 179 (306)
T ss_dssp CTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETT
T ss_pred CCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCC
Confidence 7777654333222223345555555544344444588999999876532 21110 111234555 78887
Q ss_pred EEEEEe-CCCcEEEEECCC-Cce--eeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCccc
Q psy8448 249 SVLSAS-SDGTVKMWNLKT-TEC--TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKRE 324 (482)
Q Consensus 249 ~l~~~~-~dg~i~i~d~~~-~~~--~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 324 (482)
.|+.+. ..+.|..|++.. ++. ...+.. ......+++.++| .++++....+.|.+++..++....... ...
T Consensus 180 ~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~----~~~P~gi~vd~dG-~l~va~~~~~~V~~~~~~G~~~~~~~~-~~~ 253 (306)
T 2p4o_A 180 FLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE----QTNIDDFAFDVEG-NLYGATHIYNSVVRIAPDRSTTIIAQA-EQG 253 (306)
T ss_dssp EEEEEETTTTEEEEEEBCTTSCBCCCEEEEE----SCCCSSEEEBTTC-CEEEECBTTCCEEEECTTCCEEEEECG-GGT
T ss_pred EEEEEeCCCCEEEEEEeCCCCCCCccEEEec----cCCCCCeEECCCC-CEEEEeCCCCeEEEECCCCCEEEEeec-ccc
Confidence 666554 567899999875 321 112211 1235678899998 777777778899999988765332111 111
Q ss_pred CcCEEEEEEc---CCCCEEEEEeCCc
Q psy8448 325 GGDFLCCTTS---PRGEWIYCVGEDM 347 (482)
Q Consensus 325 ~~~v~~~~~~---~~g~~l~~~~~dg 347 (482)
....++++|. |+++.|++.+..+
T Consensus 254 ~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 254 VIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp CTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred cCCceEEEEecccCCCCEEEEECCCC
Confidence 3567899998 8988888766543
No 247
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.07 E-value=4.4e-07 Score=79.55 Aligned_cols=220 Identities=11% Similarity=0.059 Sum_probs=140.5
Q ss_pred CcEEEEEEcCCCCEEE-EEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEE-eCCCcEEEEE
Q psy8448 101 SHVECARFSPDGQYLI-TGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASG-SQSGKVKIWK 178 (482)
Q Consensus 101 ~~v~~~~~s~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~-~~dg~i~iwd 178 (482)
..+.+++|+++++.|. +-..++.|..+++..+......... -.....+++.+++..|+.+ ...+.|.+++
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~--------~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~ 107 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD--------LGSPEGIALDHLGRTIFWTDSQLDRIEVAK 107 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT--------CCCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECC--------CCCccEEEEEecCCeEEEEECCCCEEEEEE
Confidence 4578999999665555 4456789999998765432221111 1467899999976655555 4567899999
Q ss_pred cCCCeEeEEeecccCCCeEEEEEccCCCEEEEEEC---CCeEEEEeCCCCceEEEee-ccccceeEEEEcCCCCEEEEEe
Q psy8448 179 IATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF---DTYVRIHGLKSGKMLKEFR-GHSSFVNDITFTADGHSVLSAS 254 (482)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~ 254 (482)
+..... ..+..........++++|++..|+.+.. .+.|..+++.... ...+. ........+++++++..|+.+.
T Consensus 108 ~~g~~~-~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d 185 (267)
T 1npe_A 108 MDGTQR-RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVD 185 (267)
T ss_dssp TTSCSC-EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEE
T ss_pred cCCCCE-EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEE
Confidence 864432 2221222245789999997667666654 3688888875432 23322 2334578999999877666555
Q ss_pred -CCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEE
Q psy8448 255 -SDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCT 332 (482)
Q Consensus 255 -~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~ 332 (482)
..+.|.++|+........+. ... ....++.. +..++++....+.|..+|. .++.+..+.... ......++
T Consensus 186 ~~~~~I~~~~~~g~~~~~~~~---~~~-~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~--~~~p~gi~ 257 (267)
T 1npe_A 186 AGTHRAECLNPAQPGRRKVLE---GLQ-YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK--QTRLYGIT 257 (267)
T ss_dssp TTTTEEEEEETTEEEEEEEEE---CCC-SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS--CCCCCCEE
T ss_pred CCCCEEEEEecCCCceEEEec---CCC-CceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccc--ccccceee
Confidence 56789999997644333322 212 23456654 4356666666789999999 577777776442 12356678
Q ss_pred EcCCCC
Q psy8448 333 TSPRGE 338 (482)
Q Consensus 333 ~~~~g~ 338 (482)
+.|++.
T Consensus 258 ~~~~~~ 263 (267)
T 1npe_A 258 IALSQC 263 (267)
T ss_dssp EECSCC
T ss_pred ecCccC
Confidence 888764
No 248
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.06 E-value=1.1e-07 Score=80.71 Aligned_cols=188 Identities=11% Similarity=0.129 Sum_probs=130.6
Q ss_pred ccEEEEEEcCCCCEEEEEeCCC--cEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEE-CCCeEEEEeCCCCce
Q psy8448 151 EAVMSLAYSRDSEMLASGSQSG--KVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTAS-FDTYVRIHGLKSGKM 227 (482)
Q Consensus 151 ~~i~~l~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~ 227 (482)
.....+.|+ ++.++.+.+.+| .|+++|+.+++.+..+......--..+++ ++..|.... .++.+.+||.++.+.
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~~ly~ltw~~~~v~v~D~~t~~~ 119 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKDKIVGLTWKNGLGFVWNIRNLRQ 119 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSSEEEEEETTTCCE
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCCEEEEEEeeCCEEEEEECccCcE
Confidence 345788898 666666666665 89999999999998874322211223444 455555554 578999999999999
Q ss_pred EEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccC-CCc-cceeEEEEcCCCCCEEEEEeCCCeE
Q psy8448 228 LKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLG-ASD-IAVNSIHLLPKNTEHFVVCNKTNTV 305 (482)
Q Consensus 228 ~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~-~~v~~i~~~~~~~~~l~~~~~d~~i 305 (482)
+.++.... .-..++ +++..|+.+..++.|.++|..+.+....+.... +.. ..++.+.|. +| .+++..-.++.|
T Consensus 120 ~~ti~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G-~lyan~w~~~~I 194 (262)
T 3nol_A 120 VRSFNYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DG-EIFANVWQTNKI 194 (262)
T ss_dssp EEEEECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEE
T ss_pred EEEEECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CC-EEEEEEccCCeE
Confidence 99887433 223444 567777777667889999999998888876421 111 234557776 55 666666678899
Q ss_pred EEEEc-CCcEEEEecCCcc---------cCcCEEEEEEcCCCCEEEEEeCC
Q psy8448 306 VIMNM-QGQIVRSLSSGKR---------EGGDFLCCTTSPRGEWIYCVGED 346 (482)
Q Consensus 306 ~i~d~-~~~~~~~~~~~~~---------~~~~v~~~~~~~~g~~l~~~~~d 346 (482)
.+.|. +++.+..+..... ...-.+.+||+|+++.|++.+..
T Consensus 195 ~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 195 VRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred EEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 99999 7888887765311 12345789999998888877753
No 249
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.00 E-value=5e-07 Score=76.05 Aligned_cols=186 Identities=12% Similarity=0.118 Sum_probs=128.6
Q ss_pred ccEEEEEEcCCCCEEEEEeCC--CcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEE-EEECCCeEEEEeCCCCce
Q psy8448 151 EAVMSLAYSRDSEMLASGSQS--GKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQIL-TASFDTYVRIHGLKSGKM 227 (482)
Q Consensus 151 ~~i~~l~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~~dg~i~i~d~~~~~~ 227 (482)
.....+.|++ +.++.+.+.+ ..|+.+|+.+++.+..+......--..+++. +..|. ..-.++.+.+||.++.+.
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~ 97 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTP 97 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcE
Confidence 4577899986 5555555654 4899999999999888743322222334443 44444 445688999999999999
Q ss_pred EEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCc---cceeEEEEcCCCCCEEEEEeCCCe
Q psy8448 228 LKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASD---IAVNSIHLLPKNTEHFVVCNKTNT 304 (482)
Q Consensus 228 ~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---~~v~~i~~~~~~~~~l~~~~~d~~ 304 (482)
+.++.... .-..++ +++..|+.+..++.|.++|..+.+....+..-. +. ..++.+.+. ++ .+++..-.+..
T Consensus 98 ~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~-~g~~~~~lNeLe~~-~G-~lyanvw~s~~ 171 (243)
T 3mbr_X 98 RARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA-GGRPLDNLNELEWV-NG-ELLANVWLTSR 171 (243)
T ss_dssp EEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEE-TTEECCCEEEEEEE-TT-EEEEEETTTTE
T ss_pred EEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc-CCcccccceeeEEe-CC-EEEEEECCCCe
Confidence 99887533 234555 466667777778999999999998888776421 11 234566665 44 56655557889
Q ss_pred EEEEEc-CCcEEEEecCCc----------ccCcCEEEEEEcCCCCEEEEEeC
Q psy8448 305 VVIMNM-QGQIVRSLSSGK----------REGGDFLCCTTSPRGEWIYCVGE 345 (482)
Q Consensus 305 i~i~d~-~~~~~~~~~~~~----------~~~~~v~~~~~~~~g~~l~~~~~ 345 (482)
|.+.|. +++.+..+.... ....-.+.+|++|+++.|++.+.
T Consensus 172 I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 172 IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 999999 788887776431 11235678999999888777665
No 250
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.98 E-value=2.4e-07 Score=85.81 Aligned_cols=216 Identities=11% Similarity=0.094 Sum_probs=139.2
Q ss_pred CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeec
Q psy8448 111 DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEK 190 (482)
Q Consensus 111 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 190 (482)
++..++.++.++.|..+|..+|+........... ...++ . .+..+++++.++.|..+|..+++.+..+..
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~----~~~p~----~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~ 171 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEA----LSRPV----V--SDGLVLIHTSNGQLQALNEADGAVKWTVNL 171 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCC----CSCCE----E--ETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCce----EcCCE----E--ECCEEEEEcCCCeEEEEECCCCcEEEEEeC
Confidence 3557778888999999999999877555433210 01111 1 245788888999999999999998877642
Q ss_pred ccCCC----eEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccc----eeE---EEEcC--CCCEEEEEeCCC
Q psy8448 191 AHSLG----VTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSF----VND---ITFTA--DGHSVLSASSDG 257 (482)
Q Consensus 191 ~~~~~----v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----i~~---l~~~~--~~~~l~~~~~dg 257 (482)
..... ...... .+..+++++.++.|..+|.++++.+......... +.. +...| .+..++.++.++
T Consensus 172 ~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g 249 (376)
T 3q7m_A 172 DMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNG 249 (376)
T ss_dssp CC-----CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTS
T ss_pred CCCceeecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCc
Confidence 21110 011222 2457888888999999999999988766532110 000 11111 246688888899
Q ss_pred cEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCC
Q psy8448 258 TVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPR 336 (482)
Q Consensus 258 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~ 336 (482)
.+..+|.++++....... .....+... + ..+++++.++.+..+|. +++.+....... ...+..... .
T Consensus 250 ~l~~~d~~tG~~~w~~~~-----~~~~~~~~~--~-~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~--~~~~~~~~~--~ 317 (376)
T 3q7m_A 250 NLTALDLRSGQIMWKREL-----GSVNDFIVD--G-NRIYLVDQNDRVMALTIDGGVTLWTQSDLL--HRLLTSPVL--Y 317 (376)
T ss_dssp CEEEEETTTCCEEEEECC-----CCEEEEEEE--T-TEEEEEETTCCEEEEETTTCCEEEEECTTT--TSCCCCCEE--E
T ss_pred EEEEEECCCCcEEeeccC-----CCCCCceEE--C-CEEEEEcCCCeEEEEECCCCcEEEeecccC--CCcccCCEE--E
Confidence 999999999987765531 123334433 3 57888888999999998 677766654221 111222222 2
Q ss_pred CCEEEEEeCCcEEE
Q psy8448 337 GEWIYCVGEDMVLV 350 (482)
Q Consensus 337 g~~l~~~~~dg~i~ 350 (482)
+..|++++.+|.++
T Consensus 318 ~~~l~v~~~~g~l~ 331 (376)
T 3q7m_A 318 NGNLVVGDSEGYLH 331 (376)
T ss_dssp TTEEEEECTTSEEE
T ss_pred CCEEEEEeCCCeEE
Confidence 56888999999999
No 251
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.98 E-value=5.3e-08 Score=97.18 Aligned_cols=237 Identities=9% Similarity=0.091 Sum_probs=132.4
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------eEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC-C
Q psy8448 105 CARFSP-DGQYLITGSVDG-----------FIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ-S 171 (482)
Q Consensus 105 ~~~~s~-~~~~l~s~~~dg-----------~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~-d 171 (482)
.+++.+ ++++++.|+.++ .+.+||..+++......... .+.....++++.++++.+++|+. +
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~-----~~~~~~~~~~~~~~g~lyv~GG~~~ 264 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT-----KHDMFCPGISMDGNGQIVVTGGNDA 264 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC-----SCCCSSCEEEECTTSCEEEECSSST
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCC-----CCCCccccccCCCCCCEEEeCCCCC
Confidence 456677 888999887543 68899998877543222111 11233445677889999999884 4
Q ss_pred CcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEE-CC-----CeEEEEeCCCCceEEEe----eccccceeEE
Q psy8448 172 GKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTAS-FD-----TYVRIHGLKSGKMLKEF----RGHSSFVNDI 241 (482)
Q Consensus 172 g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d-----g~i~i~d~~~~~~~~~~----~~~~~~i~~l 241 (482)
..+.+||..+++....-.......-.+++..++++.++.|+ .+ ..+.+||..+.+-...- ......-...
T Consensus 265 ~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~ 344 (656)
T 1k3i_A 265 KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQG 344 (656)
T ss_dssp TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTG
T ss_pred CceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccc
Confidence 68999999877543322111122223456667899999888 34 47999999876533210 0000000001
Q ss_pred EEcCCCCEEEEEeCC---------CcEEEEECCCCceeeeeeccCC------CccceeEEEEcCCCCCEEEEEeCCC---
Q psy8448 242 TFTADGHSVLSASSD---------GTVKMWNLKTTECTSTFKSLGA------SDIAVNSIHLLPKNTEHFVVCNKTN--- 303 (482)
Q Consensus 242 ~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~------~~~~v~~i~~~~~~~~~l~~~~~d~--- 303 (482)
.+..++..++.++.+ ..+..||..+............ ....-.++.+...+.++++.|+.++
T Consensus 345 ~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~ 424 (656)
T 1k3i_A 345 LYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQD 424 (656)
T ss_dssp GGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSS
T ss_pred eeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCC
Confidence 122344555555444 3567888887664433221101 0112234444443437777777432
Q ss_pred --------eEEEEEcCCcEEEEecCCcccCcC-EEEEEEcCCCCEEEEEeCC
Q psy8448 304 --------TVVIMNMQGQIVRSLSSGKREGGD-FLCCTTSPRGEWIYCVGED 346 (482)
Q Consensus 304 --------~i~i~d~~~~~~~~~~~~~~~~~~-v~~~~~~~~g~~l~~~~~d 346 (482)
.+.+||..............+... -.+++..|+|+.++.|+.+
T Consensus 425 ~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~ 476 (656)
T 1k3i_A 425 SDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR 476 (656)
T ss_dssp SBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred CCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcc
Confidence 677888754333333211111222 2345667899999999865
No 252
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.98 E-value=3.5e-07 Score=77.58 Aligned_cols=186 Identities=6% Similarity=0.032 Sum_probs=129.8
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEE
Q psy8448 151 EAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKE 230 (482)
Q Consensus 151 ~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 230 (482)
.....+.|+ ++.+..+.+.+|.|+++|+++++.+..+ .....-...+++.. +...+..-.++.+.+||.++.+.+.+
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEE
Confidence 345788887 4566677778889999999999988877 33322223355542 23344445688999999999999998
Q ss_pred eeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCcc---ceeEEEEcCCCCCEEEEEeCCCeEEE
Q psy8448 231 FRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDI---AVNSIHLLPKNTEHFVVCNKTNTVVI 307 (482)
Q Consensus 231 ~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~v~~i~~~~~~~~~l~~~~~d~~i~i 307 (482)
+.... .-..++ ++++.|+.+..++.|.++|..+.+....+.... ... .++.+.|. +| .+++....++.|.+
T Consensus 132 i~~~~-eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~-~g~~v~~lNeLe~~-dG-~lyanvw~s~~I~v 205 (268)
T 3nok_A 132 TRYSG-EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL-RGQPVELINELECA-NG-VIYANIWHSSDVLE 205 (268)
T ss_dssp EECSS-CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEE-TTEECCCEEEEEEE-TT-EEEEEETTCSEEEE
T ss_pred EeCCC-ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC-CCcccccccccEEe-CC-EEEEEECCCCeEEE
Confidence 87532 224455 567888888778999999999998888776422 222 34667776 55 66666667889999
Q ss_pred EEc-CCcEEEEecCCc----------ccCcCEEEEEEcCCCCEEEEEeC
Q psy8448 308 MNM-QGQIVRSLSSGK----------REGGDFLCCTTSPRGEWIYCVGE 345 (482)
Q Consensus 308 ~d~-~~~~~~~~~~~~----------~~~~~v~~~~~~~~g~~l~~~~~ 345 (482)
.|. +++.+..+.... ....-.+.+|++|+++.|++.+.
T Consensus 206 IDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 206 IDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp ECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 999 788877776431 11235678999998776666554
No 253
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.95 E-value=2.3e-07 Score=92.39 Aligned_cols=204 Identities=10% Similarity=0.113 Sum_probs=129.4
Q ss_pred CCEEEEEeCCCeEEEEecCCCceeeccccccccccccc-c-ccE-EEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEe
Q psy8448 112 GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLM-E-EAV-MSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKL 188 (482)
Q Consensus 112 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h-~-~~i-~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 188 (482)
+..++.++.++.|.-+|..+|+.+-.+..........+ . ..+ ..+++ .+..+++++.|+.|..+|..+++.+..+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 55677777789999999999998766654322110000 0 000 11222 3557888889999999999999998887
Q ss_pred ecccCCCeEEEEEcc--CCCEEEEEEC------CCeEEEEeCCCCceEEEeeccc-------------------------
Q psy8448 189 EKAHSLGVTCIQFSR--DNSQILTASF------DTYVRIHGLKSGKMLKEFRGHS------------------------- 235 (482)
Q Consensus 189 ~~~~~~~v~~i~~~~--~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~------------------------- 235 (482)
..........+...| .+..++++.. +|.|..+|.++++.+..+....
T Consensus 144 ~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w 223 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW 223 (668)
T ss_dssp ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred ccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcccee
Confidence 532111000011111 1335555543 5899999999999988775210
Q ss_pred ------cceeEEEEcCCCCEEEEEeCCC-------------------cEEEEECCCCceeeeeeccCCCc-------cce
Q psy8448 236 ------SFVNDITFTADGHSVLSASSDG-------------------TVKMWNLKTTECTSTFKSLGASD-------IAV 283 (482)
Q Consensus 236 ------~~i~~l~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~~~~~-------~~v 283 (482)
.....++++|+...++.++.++ .|..+|.++++.+-.++... +. .+.
T Consensus 224 ~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~-~~~wd~~~~~~~ 302 (668)
T 1kv9_A 224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTP-GDSWDFTATQQI 302 (668)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESST-TCCSCCCCCSCE
T ss_pred eeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCC-CccccccCCCCc
Confidence 0112478888888888887766 39999999999887776321 11 222
Q ss_pred eEEEEcCCCC--CEEEEEeCCCeEEEEEc-CCcEEEEe
Q psy8448 284 NSIHLLPKNT--EHFVVCNKTNTVVIMNM-QGQIVRSL 318 (482)
Q Consensus 284 ~~i~~~~~~~--~~l~~~~~d~~i~i~d~-~~~~~~~~ 318 (482)
....+..++. ..++.++.+|.++++|. +|+.+...
T Consensus 303 ~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~ 340 (668)
T 1kv9_A 303 TLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAE 340 (668)
T ss_dssp EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred EEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccc
Confidence 2222223442 26888999999999998 68877544
No 254
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.94 E-value=8.7e-06 Score=83.30 Aligned_cols=243 Identities=10% Similarity=0.080 Sum_probs=156.4
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy8448 100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKI 179 (482)
Q Consensus 100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~ 179 (482)
...|.++...++|.+.+ |+.+| |.+||..+++........ ..........|.++...++|. |-.|+.++-|..++.
T Consensus 262 ~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~-~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~ 337 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWI-GTFND-LNIYHEGTDSFASYSSNP-VENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHP 337 (795)
T ss_dssp CSBEEEEEECTTSCEEE-EESSC-EEEEETTTTEEEEECCCT-TSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECG
T ss_pred CCeEEEEEEcCCCCEEE-EeCCh-hheEcCCCCeEEEEecCC-CCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCC
Confidence 35799999999887655 44455 899998776643321111 000111246799999999887 566777778999987
Q ss_pred CCCeEeEEeec------ccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeec--------cccceeEEEEcC
Q psy8448 180 ATGQCLRKLEK------AHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRG--------HSSFVNDITFTA 245 (482)
Q Consensus 180 ~~~~~~~~~~~------~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~i~~l~~~~ 245 (482)
.++... .+.. .....|.++...++|. |.+|+.++-|..||..+++....... ....|.++...+
T Consensus 338 ~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~ 415 (795)
T 4a2l_A 338 IRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE 415 (795)
T ss_dssp GGGSSE-EECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET
T ss_pred Ccccce-EEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC
Confidence 655432 2211 1234689999888775 66788887899999877654332211 235689999988
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeeee-ccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCC---
Q psy8448 246 DGHSVLSASSDGTVKMWNLKTTECTSTFK-SLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSG--- 321 (482)
Q Consensus 246 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--- 321 (482)
+++.|..|+.++-|.+||..+++...... ........|.++...+++ .+ .+|+. +.+.+|+........+...
T Consensus 416 ~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~l-wigt~-~Gl~~~~~~~~~~~~~~~~~~~ 492 (795)
T 4a2l_A 416 KKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEG-NL-WLGTL-SALVRFNPEQRSFTTIEKEKDG 492 (795)
T ss_dssp TTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSS-CE-EEEES-SCEEEEETTTTEEEECCBCTTC
T ss_pred CCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCC-CE-EEEec-CceeEEeCCCCeEEEccccccc
Confidence 88856677777779999998876433211 000224578888888876 44 44455 4588899865555555422
Q ss_pred -cccCcCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448 322 -KREGGDFLCCTTSPRGEWIYCVGEDMVLVVRL 353 (482)
Q Consensus 322 -~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~ 353 (482)
......|.++...++|...+.. .+ -+..|+
T Consensus 493 ~~~~~~~i~~i~~d~~g~lWigt-~~-Gl~~~~ 523 (795)
T 4a2l_A 493 TPVVSKQITTLFRDSHKRLWIGG-EE-GLSVFK 523 (795)
T ss_dssp CBCCCCCEEEEEECTTCCEEEEE-SS-CEEEEE
T ss_pred cccCCceEEEEEECCCCCEEEEe-CC-ceEEEe
Confidence 1124678999999998866644 44 466343
No 255
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.94 E-value=2.2e-07 Score=92.58 Aligned_cols=232 Identities=11% Similarity=0.116 Sum_probs=147.1
Q ss_pred CCEEEEEeCCCeEEEEecCCCceeeccccccccc-cccccccEEEEEEcCCCCEEEEEeC------CCcEEEEEcCCCeE
Q psy8448 112 GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDN-FMLMEEAVMSLAYSRDSEMLASGSQ------SGKVKIWKIATGQC 184 (482)
Q Consensus 112 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~h~~~i~~l~~~~~~~~l~~~~~------dg~i~iwd~~~~~~ 184 (482)
+..++.++.|+.|..+|..+|+.+-......... ......++. . ++ .++++.. +|.|..+|..+++.
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v----~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~ 190 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV----V-KG-KVIIGNGGAEYGVRGFVSAYDADTGKL 190 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE----E-TT-EEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEE----E-CC-EEEEeCCCCCcCCCCEEEEEECCCCcE
Confidence 5577888889999999999999876655421100 000011111 1 33 4555543 58999999999999
Q ss_pred eEEeecccC------------------------------CCeEEEEEccCCCEEEEEECCC-------------------
Q psy8448 185 LRKLEKAHS------------------------------LGVTCIQFSRDNSQILTASFDT------------------- 215 (482)
Q Consensus 185 ~~~~~~~~~------------------------------~~v~~i~~~~~~~~l~~~~~dg------------------- 215 (482)
+..+..... .....+++.|+...++.++.++
T Consensus 191 ~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~ 270 (668)
T 1kv9_A 191 AWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLS 270 (668)
T ss_dssp EEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred EEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeee
Confidence 888742110 0112468888888888887776
Q ss_pred eEEEEeCCCCceEEEeec--cc-------cceeEEEEcCCCC---EEEEEeCCCcEEEEECCCCceeeeeeccC------
Q psy8448 216 YVRIHGLKSGKMLKEFRG--HS-------SFVNDITFTADGH---SVLSASSDGTVKMWNLKTTECTSTFKSLG------ 277 (482)
Q Consensus 216 ~i~i~d~~~~~~~~~~~~--~~-------~~i~~l~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------ 277 (482)
.|..+|.++++.+..+.. |. .++....+..+++ .++.++.+|.+.++|.++++.+...+...
T Consensus 271 ~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~ 350 (668)
T 1kv9_A 271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEK 350 (668)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEE
T ss_pred eEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccc
Confidence 399999999999887764 22 2222233334665 68889999999999999999874433110
Q ss_pred ---CCccc------------------------eeEEEEcCCCCCEEEEEe------------------------------
Q psy8448 278 ---ASDIA------------------------VNSIHLLPKNTEHFVVCN------------------------------ 300 (482)
Q Consensus 278 ---~~~~~------------------------v~~i~~~~~~~~~l~~~~------------------------------ 300 (482)
....+ -..++++|+. .++++..
T Consensus 351 ~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~-g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 429 (668)
T 1kv9_A 351 VDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT-GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT 429 (668)
T ss_dssp ECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT-TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred cccccCCccccccccccCCeeEECCCCccccCCCcceECCCC-CEEEEeccccceEeeeeccccccccccccCccccccC
Confidence 00000 1125677766 3444311
Q ss_pred ------CCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448 301 ------KTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLI 354 (482)
Q Consensus 301 ------~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~ 354 (482)
.+|.|..||. +++.+-...... +.....+...+.++++++.||.++.||.
T Consensus 430 ~~p~~~~~g~l~A~D~~tG~~~W~~~~~~----~~~~~~~~t~gg~vf~g~~dg~l~a~d~ 486 (668)
T 1kv9_A 430 DVPAAVVSGALLAWDPVKQKAAWKVPYPT----HWNGGTLSTAGNLVFQGTAAGQMHAYSA 486 (668)
T ss_dssp CCCGGGCEEEEEEEETTTTEEEEEEEESS----SCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred CCCCCCccceEEEEeCCCCcEEEEccCCC----CCcCceeEeCCCEEEEECCcccchhhhh
Confidence 2378999998 677766665432 2222334446889999999999996554
No 256
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.91 E-value=6.8e-06 Score=84.08 Aligned_cols=235 Identities=10% Similarity=0.107 Sum_probs=152.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q psy8448 103 VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATG 182 (482)
Q Consensus 103 v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~ 182 (482)
|.++...+++.+.+ |+.++-|..|+..+++........ ....|.++...+++.+. .++.++-+..||..++
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~-------~~~~i~~i~~d~~g~lw-igt~~~Gl~~~~~~~~ 245 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPIL-------GTKQIQAILQQSPTRIW-VATEGAGLFLINPKTK 245 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC-----------CCCEEEEEEEETTEEE-EEEBSSCEEEEETTTT
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCC-------CCCeeEEEEEcCCCCEE-EEECCCCeEEEeCCCC
Confidence 88888888887655 555545899998777654321111 13568888888877644 4554445889998776
Q ss_pred eEeEEeecc-------cCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeec-------cccceeEEEEcCCCC
Q psy8448 183 QCLRKLEKA-------HSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRG-------HSSFVNDITFTADGH 248 (482)
Q Consensus 183 ~~~~~~~~~-------~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~i~~l~~~~~~~ 248 (482)
+..... .. ....|.++...++|. |..|+.+ -|.+||..+++....... ....|.++..+++|.
T Consensus 246 ~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~ 322 (795)
T 4a2l_A 246 EIKNYL-HSPSNPKSISSNYIRSLAMDSQNR-LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG 322 (795)
T ss_dssp EEEEEC-CCTTCTTSCSCSBEEEEEECTTSC-EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC
T ss_pred eEEEee-cCCCCccccCCCeEEEEEEcCCCC-EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC
Confidence 544322 11 135699999988776 5556655 588999877654332211 235699999999887
Q ss_pred EEEEEeCCCcEEEEECCCCceeeeeecc----CCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCc--
Q psy8448 249 SVLSASSDGTVKMWNLKTTECTSTFKSL----GASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGK-- 322 (482)
Q Consensus 249 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-- 322 (482)
|..|+.++-|..|+..+.... .+... ......|.++...+++ .+.+|+.++-|..|+........+....
T Consensus 323 -lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g--~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~ 398 (795)
T 4a2l_A 323 -MWLGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDK--NLWIGTNDGGLNLYNPITQRFTSYTLQEDE 398 (795)
T ss_dssp -EEEEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTTS--CEEEEESSSCEEEECTTTCCEEEECCC---
T ss_pred -EEEEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEECCCC--CEEEEECCCCeEEEcCCCCcEEEEecCCCC
Confidence 556777777999987654322 22110 1124568899888876 4666788878999998544444443211
Q ss_pred ----ccCcCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448 323 ----REGGDFLCCTTSPRGEWIYCVGEDMVLVVRL 353 (482)
Q Consensus 323 ----~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~ 353 (482)
.....|.+++..++|+.|..|+.++-|..++
T Consensus 399 ~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d 433 (795)
T 4a2l_A 399 SARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILH 433 (795)
T ss_dssp ---CCSCSCEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred cccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEe
Confidence 1246789999999998677788877788444
No 257
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.90 E-value=6.4e-06 Score=73.97 Aligned_cols=223 Identities=11% Similarity=0.016 Sum_probs=136.3
Q ss_pred EEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe-CCCcEEEEEcCC---CeEeEEee
Q psy8448 114 YLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS-QSGKVKIWKIAT---GQCLRKLE 189 (482)
Q Consensus 114 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~-~dg~i~iwd~~~---~~~~~~~~ 189 (482)
+|+.+. ...|+..|+.+.+....+.. -..+.+++|++.+..|+.+. .++.|..+++.. +.....+.
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~~---------~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~ 72 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIPN---------LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI 72 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEECS---------CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE
T ss_pred EEEEEC-CCeEEEEECCCcceEehhcC---------CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEE
Confidence 344444 35688899887664433221 24578999998766565554 568999999875 12222221
Q ss_pred cccCCCeEEEEEccCCCEEE-EEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCC--CcEEEEECCC
Q psy8448 190 KAHSLGVTCIQFSRDNSQIL-TASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSD--GTVKMWNLKT 266 (482)
Q Consensus 190 ~~~~~~v~~i~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d--g~i~i~d~~~ 266 (482)
.........+++.+.+..|+ +-...+.|.++++........+.........++++|.+..|+.+... +.|..+++..
T Consensus 73 ~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG 152 (316)
T 1ijq_A 73 SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 152 (316)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred eCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC
Confidence 22223467889987555554 44567899999987544333333334567899999977766665543 6788888764
Q ss_pred CceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCC
Q psy8448 267 TECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGED 346 (482)
Q Consensus 267 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~d 346 (482)
. ....+.. ..-.....++++|++..++++-+..+.|..+|+++.....+............+++. .+..+++-...
T Consensus 153 ~-~~~~~~~--~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~ 228 (316)
T 1ijq_A 153 V-DIYSLVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIIN 228 (316)
T ss_dssp C-CEEEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTT
T ss_pred C-CeEEEEE--CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCC
Confidence 3 3333321 223456799999987566677777789999999765444443221112345677775 34444455566
Q ss_pred cEEE
Q psy8448 347 MVLV 350 (482)
Q Consensus 347 g~i~ 350 (482)
+.|.
T Consensus 229 ~~V~ 232 (316)
T 1ijq_A 229 EAIF 232 (316)
T ss_dssp TEEE
T ss_pred CeEE
Confidence 7777
No 258
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.86 E-value=7e-06 Score=70.17 Aligned_cols=204 Identities=11% Similarity=0.154 Sum_probs=133.3
Q ss_pred ecCCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcE
Q psy8448 96 KFGSKSHVECARFSPDGQYLI-TGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKV 174 (482)
Q Consensus 96 ~~~h~~~v~~~~~s~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i 174 (482)
+.+-.+.+..++|+|+++.|+ +...++.|...|.. ++....+.... ......+++.+++.++++.-.++.+
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g-------~~D~EGIa~~~~g~~~vs~E~~~~l 93 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDF-------VKDLETIEYIGDNQFVISDERDYAI 93 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSS-------CSSEEEEEECSTTEEEEEETTTTEE
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCC-------CCChHHeEEeCCCEEEEEECCCCcE
Confidence 336667899999999766554 56778899999987 88777665432 2457788898888776766577889
Q ss_pred EEEEcCCCeE---eEEee-----cccCCCeEEEEEccCCCEEEEEECCCeEEEEeCC---CCceEEEee-------cccc
Q psy8448 175 KIWKIATGQC---LRKLE-----KAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLK---SGKMLKEFR-------GHSS 236 (482)
Q Consensus 175 ~iwd~~~~~~---~~~~~-----~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~-------~~~~ 236 (482)
.++++..... ..... .........++|+|.++.|+++.......+|.++ ....+..+. .+..
T Consensus 94 ~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~ 173 (255)
T 3qqz_A 94 YVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLD 173 (255)
T ss_dssp EEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSS
T ss_pred EEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccC
Confidence 9998765442 22221 1234557899999998888777765544555443 111122221 1233
Q ss_pred ceeEEEEcCCCCE-EEEEeCCCcEEEEECCCCceeeeeeccCCC------ccceeEEEEcCCCCCEEEEEeCCCeEEEEE
Q psy8448 237 FVNDITFTADGHS-VLSASSDGTVKMWNLKTTECTSTFKSLGAS------DIAVNSIHLLPKNTEHFVVCNKTNTVVIMN 309 (482)
Q Consensus 237 ~i~~l~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d 309 (482)
.+.+++++|.... ++....+..|.++|.. ++.+..+....+. -..-..|++.++| +++++ +..+.++.+.
T Consensus 174 d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G-~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 174 DVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASG-NIYIV-SEPNRFYRFT 250 (255)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTC-CEEEE-ETTTEEEEEE
T ss_pred CceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCC-CEEEE-cCCceEEEEE
Confidence 5789999996554 4555566778899966 5555555432221 1356789999998 55555 6777766665
Q ss_pred c
Q psy8448 310 M 310 (482)
Q Consensus 310 ~ 310 (482)
.
T Consensus 251 ~ 251 (255)
T 3qqz_A 251 P 251 (255)
T ss_dssp C
T ss_pred e
Confidence 4
No 259
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.85 E-value=1.4e-06 Score=78.77 Aligned_cols=184 Identities=14% Similarity=0.129 Sum_probs=118.3
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecc-------------------cCCCeEEEEEccCCCEEEEEE
Q psy8448 152 AVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKA-------------------HSLGVTCIQFSRDNSQILTAS 212 (482)
Q Consensus 152 ~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------------------~~~~v~~i~~~~~~~~l~~~~ 212 (482)
...+++|.+++++++++..++.|..|+..+++.. .+... .......+++.+++..|+++.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 3567889999987888888999999998765432 22110 113478899997334566666
Q ss_pred CCCeEEEEeCCCCceEEEeec-----cccceeEEEEcC-CCCEEEEEeC-----------------CCcEEEEECCCCce
Q psy8448 213 FDTYVRIHGLKSGKMLKEFRG-----HSSFVNDITFTA-DGHSVLSASS-----------------DGTVKMWNLKTTEC 269 (482)
Q Consensus 213 ~dg~i~i~d~~~~~~~~~~~~-----~~~~i~~l~~~~-~~~~l~~~~~-----------------dg~i~i~d~~~~~~ 269 (482)
..+.|..+|..+++. ..+.. .......+++.+ +|+..++-.. ++.|..||..+++.
T Consensus 99 ~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp TTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred CCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 666688899765532 22211 123468899999 9986665432 36788899877654
Q ss_pred eeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc---EEEEecCCcccCcCEEEEEEcCCCCEEEEEeC
Q psy8448 270 TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQ---IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGE 345 (482)
Q Consensus 270 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~ 345 (482)
..... .......++++|++..++++-+..+.|..|++.+. ....+... .+ ...++++++|++.++...
T Consensus 178 ~~~~~----~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~---~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 178 TLLLK----ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI---PN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp EEEEE----EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC---SS-EEEEEECTTSCEEEEEEE
T ss_pred EEecc----CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC---CC-CCCeEECCCCCEEEEecC
Confidence 33222 12234679999998335555566789999998531 12222211 23 677999999986666544
No 260
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.84 E-value=2e-06 Score=83.78 Aligned_cols=230 Identities=12% Similarity=0.093 Sum_probs=142.4
Q ss_pred CCEEEEEeCCCeEEEEecCCCceeeccccccccc-cccccccEEEEEEcCCCCEEEEEeC------CCcEEEEEcCCCeE
Q psy8448 112 GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDN-FMLMEEAVMSLAYSRDSEMLASGSQ------SGKVKIWKIATGQC 184 (482)
Q Consensus 112 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~h~~~i~~l~~~~~~~~l~~~~~------dg~i~iwd~~~~~~ 184 (482)
+..++.++.|+.|..+|..+|+..-......... ......++ .. + ..+++++. ++.|..+|..+++.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~----v~-~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~ 188 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPF----VA-K-DTVLMGCSGAELGVRGAVNAFDLKTGEL 188 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCE----EE-T-TEEEEECBCGGGTCCCEEEEEETTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCE----EE-C-CEEEEEecCCccCCCCEEEEEECCCCcE
Confidence 5577888889999999999999876554332100 00001111 11 3 35666554 78999999999999
Q ss_pred eEEeecccCC-------------------------------------CeEEEEEccCCCEEEEEECC-------------
Q psy8448 185 LRKLEKAHSL-------------------------------------GVTCIQFSRDNSQILTASFD------------- 214 (482)
Q Consensus 185 ~~~~~~~~~~-------------------------------------~v~~i~~~~~~~~l~~~~~d------------- 214 (482)
+.++...... ....+++.++...++.+..+
T Consensus 189 ~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~ 268 (571)
T 2ad6_A 189 KWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDN 268 (571)
T ss_dssp EEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCC
T ss_pred EEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCc
Confidence 8877432110 00235667766677766532
Q ss_pred ---CeEEEEeCCCCceEEEeecc--c--------cceeEEEEcCCCC---EEEEEeCCCcEEEEECCCCceeeeeeccCC
Q psy8448 215 ---TYVRIHGLKSGKMLKEFRGH--S--------SFVNDITFTADGH---SVLSASSDGTVKMWNLKTTECTSTFKSLGA 278 (482)
Q Consensus 215 ---g~i~i~d~~~~~~~~~~~~~--~--------~~i~~l~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 278 (482)
+.|..+|.++++.+..++.. . .++ -+....+|+ .++.++.+|.+.++|.++++.+..+.....
T Consensus 269 ~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~ 347 (571)
T 2ad6_A 269 KWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPA 347 (571)
T ss_dssp TTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTT
T ss_pred eeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCC
Confidence 36999999999998877532 1 122 122224674 577788999999999999988766542110
Q ss_pred ----------Cccce--------------------------eEEEEcCCCCCEEEEEe----------------------
Q psy8448 279 ----------SDIAV--------------------------NSIHLLPKNTEHFVVCN---------------------- 300 (482)
Q Consensus 279 ----------~~~~v--------------------------~~i~~~~~~~~~l~~~~---------------------- 300 (482)
...++ ..++++|+. .++++..
T Consensus 348 ~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~-g~~yv~~~~~~~~~~~~~~~~~~g~~~~g 426 (571)
T 2ad6_A 348 VNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES-RTLYAGLNHICMDWEPFMLPYRAGQFFVG 426 (571)
T ss_dssp CCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT-TEEEEEEECEEEEEEECCCCCCTTSCCCC
T ss_pred ccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC-CEEEEEchhccccccccccccccCCcccc
Confidence 00111 235677776 4554442
Q ss_pred ---------------CCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448 301 ---------------KTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRL 353 (482)
Q Consensus 301 ---------------~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~ 353 (482)
.++.|..+|. +++.+-.+.... .+....+...+..++.++.||.++.+|
T Consensus 427 ~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~----~~~~~~~~t~gg~v~~g~~dg~l~a~D 491 (571)
T 2ad6_A 427 ATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF----AAWGGTLYTKGGLVWYATLDGYLKALD 491 (571)
T ss_dssp EEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS----CCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred ccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC----CccceeEEECCCEEEEEcCCCeEEEEE
Confidence 3478999998 677766665321 122222233467888899999999444
No 261
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.84 E-value=9.2e-06 Score=73.99 Aligned_cols=231 Identities=8% Similarity=0.012 Sum_probs=142.4
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe-CCCcEEEEEcC
Q psy8448 102 HVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS-QSGKVKIWKIA 180 (482)
Q Consensus 102 ~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~-~dg~i~iwd~~ 180 (482)
..+|.+..+++ +|+.+. ...|+..++........... -..+..++|++.+..|+.+. ..+.|..+++.
T Consensus 35 ~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~---------~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~ 103 (349)
T 3v64_C 35 RRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNN---------LENAIALDFHHRRELVFWSDVTLDRILRANLN 103 (349)
T ss_dssp SSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECS---------CSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeecC---------CCceEEEEEeccccEEEEEeccCCceEEEecC
Confidence 44566666643 444443 35588888765543322211 24578999998666666554 66889999987
Q ss_pred CCeEeEEeecccCCCeEEEEEccCCCEEE-EEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeC-C-C
Q psy8448 181 TGQCLRKLEKAHSLGVTCIQFSRDNSQIL-TASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASS-D-G 257 (482)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d-g 257 (482)
.......+ .........+++.+.+..|+ +-...+.|.+.++........+.........++++|.+..|+.... . +
T Consensus 104 g~~~~~~~-~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~ 182 (349)
T 3v64_C 104 GSNVEEVV-STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTP 182 (349)
T ss_dssp SCSCEEEE-CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSC
T ss_pred CCCceEEE-eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCC
Confidence 66543333 22334457889987555554 4455678999998755433333334456789999997666665543 4 7
Q ss_pred cEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCC
Q psy8448 258 TVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRG 337 (482)
Q Consensus 258 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g 337 (482)
.|..+++.......... ..-...+.++++|++..++++-...+.|..+++++.....+.... ......+++. .+
T Consensus 183 ~I~r~~~dG~~~~~~~~---~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~giav~-~~ 256 (349)
T 3v64_C 183 RIEASSMDGSGRRIIAD---THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITVF-ED 256 (349)
T ss_dssp EEEEEETTSCSCEESCC---SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--CSSEEEEEEE-TT
T ss_pred EEEEEeCCCCCcEEEEE---CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC--CCCceEEEEE-CC
Confidence 78888887543222221 223356899999887567777777889999999765444433221 3345677773 34
Q ss_pred CEEEEEeCCcEEE
Q psy8448 338 EWIYCVGEDMVLV 350 (482)
Q Consensus 338 ~~l~~~~~dg~i~ 350 (482)
...++-...+.|.
T Consensus 257 ~ly~td~~~~~V~ 269 (349)
T 3v64_C 257 SLYWTDWHTKSIN 269 (349)
T ss_dssp EEEEEETTTTEEE
T ss_pred EEEEecCCCCeEE
Confidence 4444555567776
No 262
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.84 E-value=1.1e-06 Score=88.90 Aligned_cols=199 Identities=13% Similarity=0.075 Sum_probs=118.6
Q ss_pred CCCC-cEEEEEEc-CCCCEEEEEeC-C----CeEEEEecCCC-ceeeccccccccccccccccEEEEEEcCCCCEEEEEe
Q psy8448 98 GSKS-HVECARFS-PDGQYLITGSV-D----GFIEVWNFTTG-KIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS 169 (482)
Q Consensus 98 ~h~~-~v~~~~~s-~~~~~l~s~~~-d----g~v~iwd~~~~-~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~ 169 (482)
+|.- .+...+|| |||++||.+.. + .+|+++|+.++ +.+.. .. ......++|+||++.|+...
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~---------~~~~~~~~WspDg~~l~y~~ 239 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KV---------SGTNGEIVWGPDHTSLFYVT 239 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CE---------EEECSCCEECSSTTEEEEEE
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cc---------cCceeeEEEecCCCEEEEEE
Confidence 4443 68899999 99999886542 2 25999999988 63211 00 11234688999999888877
Q ss_pred CC-----CcEEEEEcCCCeE--eEEeecccCCCeEEEEEccCCCEEEEEEC---CCeEEEEeCCCCc-eE--EEe-eccc
Q psy8448 170 QS-----GKVKIWKIATGQC--LRKLEKAHSLGVTCIQFSRDNSQILTASF---DTYVRIHGLKSGK-ML--KEF-RGHS 235 (482)
Q Consensus 170 ~d-----g~i~iwd~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~---dg~i~i~d~~~~~-~~--~~~-~~~~ 235 (482)
.+ ..|.++++.++.. ...+..........+.|+|||++|+.... ...|+++|+.++. .. ..+ ....
T Consensus 240 ~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~ 319 (751)
T 2xe4_A 240 KDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREK 319 (751)
T ss_dssp ECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCT
T ss_pred ECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCC
Confidence 65 2588888876642 22232223344678899999999887653 3478899998752 22 333 2334
Q ss_pred cceeEEEEcCCCCEEEEEe-CC----CcEEEEECCCCceeee-eeccCCCccceeEEEEcCCCCCEEEEEeCCCe--EEE
Q psy8448 236 SFVNDITFTADGHSVLSAS-SD----GTVKMWNLKTTECTST-FKSLGASDIAVNSIHLLPKNTEHFVVCNKTNT--VVI 307 (482)
Q Consensus 236 ~~i~~l~~~~~~~~l~~~~-~d----g~i~i~d~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~--i~i 307 (482)
....++.|+. +..|+..+ .+ ..|..+|+.++..... +... .....+..+.+. +..++++...++. |.+
T Consensus 320 ~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~-~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~ 395 (751)
T 2xe4_A 320 GVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDH-SEDVFMESIAVR--SNYLVVAGRRAGLTRIWT 395 (751)
T ss_dssp TCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECC-CSSEEEEEEEEC--SSEEEEEEEETTEEEEEE
T ss_pred CceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECC-CCCcEEEEEEEE--CCEEEEEEEeCCEEEEEE
Confidence 4455565544 55554443 33 2577777765322122 2110 122244555554 4366777777775 455
Q ss_pred EEc
Q psy8448 308 MNM 310 (482)
Q Consensus 308 ~d~ 310 (482)
+++
T Consensus 396 ~dl 398 (751)
T 2xe4_A 396 MMA 398 (751)
T ss_dssp EEC
T ss_pred Eec
Confidence 564
No 263
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.83 E-value=2.6e-06 Score=83.03 Aligned_cols=236 Identities=13% Similarity=0.087 Sum_probs=143.6
Q ss_pred CCEEEEEeC-CCeEEEEec-CCCceeeccccccccccccc--ccc-EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeE
Q psy8448 112 GQYLITGSV-DGFIEVWNF-TTGKIRKDLKYQAQDNFMLM--EEA-VMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLR 186 (482)
Q Consensus 112 ~~~l~s~~~-dg~v~iwd~-~~~~~~~~~~~~~~~~~~~h--~~~-i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 186 (482)
+..++.++. ++.|.-+|. .+|+.+-............. ... ...+++ .+..+++++.|+.+..+|..+++.+.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 456666666 889999999 89998766544321100000 000 011222 35678888899999999999999988
Q ss_pred EeecccC---CCeEE-EEEccCCCEEEEEEC------CCeEEEEeCCCCceEEEeeccccc-------------------
Q psy8448 187 KLEKAHS---LGVTC-IQFSRDNSQILTASF------DTYVRIHGLKSGKMLKEFRGHSSF------------------- 237 (482)
Q Consensus 187 ~~~~~~~---~~v~~-i~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~------------------- 237 (482)
....... ..+.+ ... .+..+++++. ++.|..+|.++++.+.++......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 7642210 01111 111 1345666654 789999999999998776532110
Q ss_pred -------------------eeEEEEcCCCCEEEEEeCC----------------CcEEEEECCCCceeeeeeccCC----
Q psy8448 238 -------------------VNDITFTADGHSVLSASSD----------------GTVKMWNLKTTECTSTFKSLGA---- 278 (482)
Q Consensus 238 -------------------i~~l~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~~~~~~~---- 278 (482)
...++++++...++.++.+ +.|..+|.++++.+-.++....
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence 0235677776777776642 2599999999998877763210
Q ss_pred ---CccceeEEEEcCCCC--CEEEEEeCCCeEEEEEc-CCcEEEEecCCcc----------cCcCE--------------
Q psy8448 279 ---SDIAVNSIHLLPKNT--EHFVVCNKTNTVVIMNM-QGQIVRSLSSGKR----------EGGDF-------------- 328 (482)
Q Consensus 279 ---~~~~v~~i~~~~~~~--~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~----------~~~~v-------------- 328 (482)
...++. +...++|. ..++.++.+|.++++|. +|+.+........ ...++
T Consensus 298 ~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~ 376 (571)
T 2ad6_A 298 FAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGT 376 (571)
T ss_dssp CCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEE
T ss_pred cccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCce
Confidence 112221 22223452 35677889999999998 7887766543210 00111
Q ss_pred ------------EEEEEcCCCCEEEEEeCCcEEEEE
Q psy8448 329 ------------LCCTTSPRGEWIYCVGEDMVLVVR 352 (482)
Q Consensus 329 ------------~~~~~~~~g~~l~~~~~dg~i~iw 352 (482)
..++++|+...+++...+....++
T Consensus 377 ~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~ 412 (571)
T 2ad6_A 377 NICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWE 412 (571)
T ss_dssp EESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEE
T ss_pred EECCCCccccCCCCceECCCCCEEEEEchhcccccc
Confidence 236788888899888776555544
No 264
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.81 E-value=8.7e-06 Score=75.32 Aligned_cols=230 Identities=8% Similarity=0.013 Sum_probs=142.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe-CCCcEEEEEcCC
Q psy8448 103 VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS-QSGKVKIWKIAT 181 (482)
Q Consensus 103 v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~-~dg~i~iwd~~~ 181 (482)
-.|.+..+. .+|+.+. ...|+..++........... ...+..++|.+.+..|+.+. ..+.|..+++..
T Consensus 79 ~~C~~~~~~-~~l~~~~-~~~I~~i~~~~~~~~~~~~~---------~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g 147 (386)
T 3v65_B 79 RSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLLNN---------LENAIALDFHHRRELVFWSDVTLDRILRANLNG 147 (386)
T ss_dssp SCEEECSSC-CEEEEEC-BSCEEEECTTSCCCEEEECS---------CSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CeECCcccc-ceeEeec-CccceeeccCCCcEEEEecC---------CCccEEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence 345555553 3444443 35688888876554332221 24588999998666565554 668899999876
Q ss_pred CeEeEEeecccCCCeEEEEEccCCCEEE-EEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeC-C-Cc
Q psy8448 182 GQCLRKLEKAHSLGVTCIQFSRDNSQIL-TASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASS-D-GT 258 (482)
Q Consensus 182 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d-g~ 258 (482)
+.....+ .........+++.+.+..|+ +-...+.|.+.++........+.........++++|.+..|+.+.. . +.
T Consensus 148 ~~~~~~~-~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~ 226 (386)
T 3v65_B 148 SNVEEVV-STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPR 226 (386)
T ss_dssp CCEEEEE-CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCE
T ss_pred CCcEEEE-eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCE
Confidence 6543333 22333456788887555554 4455678999998654433333333456789999997776666553 3 67
Q ss_pred EEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCC
Q psy8448 259 VKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGE 338 (482)
Q Consensus 259 i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~ 338 (482)
|..+++.......... ..-...+.++++|++..++++-+..+.|..+++++.....+.... ......+++. .+.
T Consensus 227 I~r~~~dG~~~~~~~~---~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--~~~P~giav~-~~~ 300 (386)
T 3v65_B 227 IEASSMDGSGRRIIAD---THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITVF-EDS 300 (386)
T ss_dssp EEEEETTSCSCEEEEC---SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS--CSSEEEEEEE-TTE
T ss_pred EEEEeCCCCCcEEEEE---CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC--CCCceEEEEE-CCE
Confidence 8888887543222221 223346789999877567777777889999999765444433221 3345677773 344
Q ss_pred EEEEEeCCcEEE
Q psy8448 339 WIYCVGEDMVLV 350 (482)
Q Consensus 339 ~l~~~~~dg~i~ 350 (482)
.+++-...+.|.
T Consensus 301 ly~td~~~~~V~ 312 (386)
T 3v65_B 301 LYWTDWHTKSIN 312 (386)
T ss_dssp EEEEETTTTEEE
T ss_pred EEEeeCCCCeEE
Confidence 445555667777
No 265
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.80 E-value=3.2e-06 Score=82.36 Aligned_cols=163 Identities=12% Similarity=0.103 Sum_probs=104.8
Q ss_pred EEEcCCCCE----EEEEeCCCeEEEEecCCCceeecccccccccc-ccccccEEEEEEcCCCCEEEEEe------CCCcE
Q psy8448 106 ARFSPDGQY----LITGSVDGFIEVWNFTTGKIRKDLKYQAQDNF-MLMEEAVMSLAYSRDSEMLASGS------QSGKV 174 (482)
Q Consensus 106 ~~~s~~~~~----l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~~h~~~i~~l~~~~~~~~l~~~~------~dg~i 174 (482)
++++|.+.. ++.++.|+.|..+|..+|+.+-.......... .....++ .. ++ .+++++ .+|.|
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~----v~-~g-~V~vg~~g~e~g~~g~v 184 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPY----VV-KD-KVIIGSSGAELGVRGYL 184 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCE----EE-TT-EEEECCBCGGGTCCCEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCE----EE-CC-EEEEEecccccCCCCeE
Confidence 455444444 78888899999999999998765443221000 0001111 11 34 455554 37999
Q ss_pred EEEEcCCCeEeEEeecccCC------------------------------------Ce-EEEEEccCCCEEEEEECC---
Q psy8448 175 KIWKIATGQCLRKLEKAHSL------------------------------------GV-TCIQFSRDNSQILTASFD--- 214 (482)
Q Consensus 175 ~iwd~~~~~~~~~~~~~~~~------------------------------------~v-~~i~~~~~~~~l~~~~~d--- 214 (482)
+.+|.++++.+.++...... .+ ..+++.++...++.+..+
T Consensus 185 ~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p 264 (599)
T 1w6s_A 185 TAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAP 264 (599)
T ss_dssp EEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSC
T ss_pred EEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCcc
Confidence 99999999998877432211 00 134566777778877665
Q ss_pred -------------CeEEEEeCCCCceEEEeecccc---------ceeEEEEc-CCC---CEEEEEeCCCcEEEEECCCCc
Q psy8448 215 -------------TYVRIHGLKSGKMLKEFRGHSS---------FVNDITFT-ADG---HSVLSASSDGTVKMWNLKTTE 268 (482)
Q Consensus 215 -------------g~i~i~d~~~~~~~~~~~~~~~---------~i~~l~~~-~~~---~~l~~~~~dg~i~i~d~~~~~ 268 (482)
+.|..+|.++++.+..++.... ...-+... .+| ..++.++.+|.+.++|.++++
T Consensus 265 ~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 344 (599)
T 1w6s_A 265 WNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA 344 (599)
T ss_dssp SCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred ccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCC
Confidence 3899999999999887764221 11112222 467 467778899999999999999
Q ss_pred eeeeee
Q psy8448 269 CTSTFK 274 (482)
Q Consensus 269 ~~~~~~ 274 (482)
.+....
T Consensus 345 ~lw~~~ 350 (599)
T 1w6s_A 345 LVSANK 350 (599)
T ss_dssp EEEEEE
T ss_pred Eeeccc
Confidence 876654
No 266
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.80 E-value=2e-05 Score=73.22 Aligned_cols=223 Identities=11% Similarity=0.027 Sum_probs=138.0
Q ss_pred EEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCe---EeEEee
Q psy8448 114 YLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS-QSGKVKIWKIATGQ---CLRKLE 189 (482)
Q Consensus 114 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~---~~~~~~ 189 (482)
+|+.+. ...|+..++........... -..+..++|++.+..|+.+. ..+.|+.+++.... ....+.
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~---------~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~ 154 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIPN---------LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI 154 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEECS---------CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE
T ss_pred eeEEec-cceeEEEccCCcceeEeccc---------cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE
Confidence 454444 46799888876654332221 35688999999666666654 56789889886521 122222
Q ss_pred cccCCCeEEEEEccCCCEEE-EEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeC--CCcEEEEECCC
Q psy8448 190 KAHSLGVTCIQFSRDNSQIL-TASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASS--DGTVKMWNLKT 266 (482)
Q Consensus 190 ~~~~~~v~~i~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--dg~i~i~d~~~ 266 (482)
.........+++.+.+..|+ +-...+.|.+.+++.......+.........|+++|.+..|+.... .+.|...++..
T Consensus 155 ~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG 234 (400)
T 3p5b_L 155 SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 234 (400)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS
T ss_pred eCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC
Confidence 33345678899988544454 5456789999998766544444434456789999997776766653 37899999875
Q ss_pred CceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCC
Q psy8448 267 TECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGED 346 (482)
Q Consensus 267 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~d 346 (482)
......+. ..-...+.|++++++..++++-...+.|..+|++|.....+............+++. .+..+++-...
T Consensus 235 ~~~~~~~~---~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~ 310 (400)
T 3p5b_L 235 VDIYSLVT---ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIIN 310 (400)
T ss_dssp CSCEEEEC---SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSS
T ss_pred CccEEEEE---CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCC
Confidence 43322222 223456899999888566666667789999999776554443321112344567763 23344444555
Q ss_pred cEEE
Q psy8448 347 MVLV 350 (482)
Q Consensus 347 g~i~ 350 (482)
+.|.
T Consensus 311 ~~V~ 314 (400)
T 3p5b_L 311 EAIF 314 (400)
T ss_dssp CSEE
T ss_pred CeEE
Confidence 6666
No 267
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.77 E-value=4.5e-06 Score=81.36 Aligned_cols=236 Identities=11% Similarity=0.097 Sum_probs=145.7
Q ss_pred CCEEEEEeC-CCeEEEEec-CCCceeecccccccccccc---ccccEEEEEEcCCCCE----EEEEeCCCcEEEEEcCCC
Q psy8448 112 GQYLITGSV-DGFIEVWNF-TTGKIRKDLKYQAQDNFML---MEEAVMSLAYSRDSEM----LASGSQSGKVKIWKIATG 182 (482)
Q Consensus 112 ~~~l~s~~~-dg~v~iwd~-~~~~~~~~~~~~~~~~~~~---h~~~i~~l~~~~~~~~----l~~~~~dg~i~iwd~~~~ 182 (482)
+..++.++. ++.|.-+|. .+|+.+-.+.......... .......+++.|.+.. +++++.|+.+..+|..+|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 456666776 889999999 8999876655432110000 0001123455444444 888889999999999999
Q ss_pred eEeEEeecccC---CCeEE-EEEccCCCEEEEEE------CCCeEEEEeCCCCceEEEeeccccc---------------
Q psy8448 183 QCLRKLEKAHS---LGVTC-IQFSRDNSQILTAS------FDTYVRIHGLKSGKMLKEFRGHSSF--------------- 237 (482)
Q Consensus 183 ~~~~~~~~~~~---~~v~~-i~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~--------------- 237 (482)
+.+........ ..+.+ ..+. ++ .+++++ .++.|+.+|.++++.+..+......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~ 219 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH 219 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred CEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence 99877642210 01111 1111 34 555555 3799999999999998776532111
Q ss_pred ----------------------e-eEEEEcCCCCEEEEEeCCC----------------cEEEEECCCCceeeeeeccCC
Q psy8448 238 ----------------------V-NDITFTADGHSVLSASSDG----------------TVKMWNLKTTECTSTFKSLGA 278 (482)
Q Consensus 238 ----------------------i-~~l~~~~~~~~l~~~~~dg----------------~i~i~d~~~~~~~~~~~~~~~ 278 (482)
+ ..+++.++...++.++.++ .|..+|.++++.+-.++....
T Consensus 220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~ 299 (599)
T 1w6s_A 220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH 299 (599)
T ss_dssp GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCC
Confidence 0 1356677778888777653 799999999998877764211
Q ss_pred -------CccceeEEEEc-CCCC--CEEEEEeCCCeEEEEEc-CCcEEEEecCCc----------ccCcCE---------
Q psy8448 279 -------SDIAVNSIHLL-PKNT--EHFVVCNKTNTVVIMNM-QGQIVRSLSSGK----------REGGDF--------- 328 (482)
Q Consensus 279 -------~~~~v~~i~~~-~~~~--~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~----------~~~~~v--------- 328 (482)
...++. +... .+|. ..++.++.+|.++++|. +|+.+....... ....++
T Consensus 300 d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~ 378 (599)
T 1w6s_A 300 DEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRM 378 (599)
T ss_dssp CSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCT
T ss_pred ccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCC
Confidence 011221 2221 3442 36777889999999998 788776654321 000111
Q ss_pred -----------------EEEEEcCCCCEEEEEeCCcEEE
Q psy8448 329 -----------------LCCTTSPRGEWIYCVGEDMVLV 350 (482)
Q Consensus 329 -----------------~~~~~~~~g~~l~~~~~dg~i~ 350 (482)
..++++|+..++++...+....
T Consensus 379 ~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~ 417 (599)
T 1w6s_A 379 DHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMD 417 (599)
T ss_dssp TCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEE
T ss_pred CCCccEeccCcccccCCCCccCCCCCCEEEEecccccee
Confidence 2468899988888887765544
No 268
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.77 E-value=4.3e-06 Score=78.49 Aligned_cols=239 Identities=8% Similarity=0.026 Sum_probs=139.9
Q ss_pred cEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC-C----cEE
Q psy8448 102 HVECARFSP-DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS-G----KVK 175 (482)
Q Consensus 102 ~v~~~~~s~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d-g----~i~ 175 (482)
....|+++| ++..|..+...+.|+.+|+..+....... . ......++|++++++|+++... + .+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~--------~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~ 208 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-G--------LSKVRTICWTHEADSMIITNDQNNNDRPNNY 208 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-C--------CSCEEEEEECTTSSEEEEEECCSCTTSEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-C--------CCCcceEEEeCCCCEEEEEeCCCCcccceEE
Confidence 457899998 45566666555889999988766443322 1 2568899999999966666542 2 233
Q ss_pred EEEcCCCeEe--EEeecccCCCeEEEEEcc-CCCEEEEEECCCeEEEEeCCCCceEEEeec-cccceeEEEEcCCCCEEE
Q psy8448 176 IWKIATGQCL--RKLEKAHSLGVTCIQFSR-DNSQILTASFDTYVRIHGLKSGKMLKEFRG-HSSFVNDITFTADGHSVL 251 (482)
Q Consensus 176 iwd~~~~~~~--~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~ 251 (482)
+++. .+... ..+. .......++++| ++..+++-..++.|..++...+........ .......++|+|++++|+
T Consensus 209 ~~~~-~g~~~~~~~l~--~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~ly 285 (430)
T 3tc9_A 209 ILTR-ESGFKVITELT--KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAY 285 (430)
T ss_dssp EEEG-GGTSCSEEEEE--ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEE
T ss_pred EEeC-CCceeeeeeec--cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEE
Confidence 4443 33222 2221 223456788999 666555555678999999987654222221 224578999999999555
Q ss_pred EE-eCCCcEEEEECCC--Cce--eeeeecc-C--C----------CccceeEEEEc--------CCCCCEEEEEeCCCeE
Q psy8448 252 SA-SSDGTVKMWNLKT--TEC--TSTFKSL-G--A----------SDIAVNSIHLL--------PKNTEHFVVCNKTNTV 305 (482)
Q Consensus 252 ~~-~~dg~i~i~d~~~--~~~--~~~~~~~-~--~----------~~~~v~~i~~~--------~~~~~~l~~~~~d~~i 305 (482)
.+ ...+.|..++... ++. ...+... . + ...+-..++.. +++ .++++-...+.|
T Consensus 286 v~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g-~lyvaD~~n~~I 364 (430)
T 3tc9_A 286 IVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEY-DFYFCDRENHCI 364 (430)
T ss_dssp EEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCE-EEEEEEGGGTEE
T ss_pred EEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCC-eEEEEECCCcEE
Confidence 54 4577899987653 221 1111110 0 0 01111144443 233 556665667889
Q ss_pred EEEEcCCcEEEEecCC----cc----------cCcCEEEEEEcCC-CCEEEEEeCCcEEEEEe
Q psy8448 306 VIMNMQGQIVRSLSSG----KR----------EGGDFLCCTTSPR-GEWIYCVGEDMVLVVRL 353 (482)
Q Consensus 306 ~i~d~~~~~~~~~~~~----~~----------~~~~v~~~~~~~~-g~~l~~~~~dg~i~iw~ 353 (482)
+.++.+|......... .. .-.....++++|+ +.++++-..++.|+..+
T Consensus 365 ~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~ 427 (430)
T 3tc9_A 365 RILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIG 427 (430)
T ss_dssp EEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred EEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEc
Confidence 8888777544333220 00 0125788999995 55555555667787443
No 269
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.77 E-value=3.5e-05 Score=78.65 Aligned_cols=242 Identities=10% Similarity=0.033 Sum_probs=147.5
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q psy8448 101 SHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIA 180 (482)
Q Consensus 101 ~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~ 180 (482)
..|.++...++|.+.+. +.+ -+.+||..+++........ ..........|.++...++|. |..|+..+-|.++|..
T Consensus 211 ~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~~~~~~~~~-~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~ 286 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIG-TSK-GLALFNANTETFTNFHNNP-GNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQ 286 (781)
T ss_dssp SSEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEC------------CCCCEEEEEECTTSE-EEEEESSSCEEEEETT
T ss_pred CceeEEEEcCCCCEEEE-eCC-cHheECCCCCcEEEEEcCC-CccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCC
Confidence 56999999988876664 444 5899998776543221111 000001135799999988876 5556664568889987
Q ss_pred CCeEeEEee-------------cccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEee---------ccccce
Q psy8448 181 TGQCLRKLE-------------KAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFR---------GHSSFV 238 (482)
Q Consensus 181 ~~~~~~~~~-------------~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------~~~~~i 238 (482)
++....... ......|.++...++|. |.+|+.++-|..++........... .....|
T Consensus 287 ~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v 365 (781)
T 3v9f_A 287 QNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVV 365 (781)
T ss_dssp CC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCE
T ss_pred CCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcce
Confidence 665322110 11245689998888775 7778878889999987654322110 123568
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEe
Q psy8448 239 NDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSL 318 (482)
Q Consensus 239 ~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 318 (482)
.++...+++. |..|+.++-|..||..++...............|.++...+++ .+.+|+.++.+..++........+
T Consensus 366 ~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~ 442 (781)
T 3v9f_A 366 SSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEG--NLWFGTYLGNISYYNTRLKKFQII 442 (781)
T ss_dssp EEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTS--CEEEEETTEEEEEECSSSCEEEEC
T ss_pred EEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCC--CEEEEeccCCEEEEcCCCCcEEEe
Confidence 9999988877 5566656668999987543322111011234678888887776 455577777788998865555555
Q ss_pred cCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEE
Q psy8448 319 SSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVR 352 (482)
Q Consensus 319 ~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw 352 (482)
.........|.++...++|.+.+ |+. +-+..+
T Consensus 443 ~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~ 474 (781)
T 3v9f_A 443 ELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVI 474 (781)
T ss_dssp CSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEE
T ss_pred ccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEE
Confidence 43212256789999988886444 555 456633
No 270
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.73 E-value=7.5e-06 Score=76.84 Aligned_cols=240 Identities=8% Similarity=0.030 Sum_probs=140.8
Q ss_pred CcEEEEEEcCC--CCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCC-----c
Q psy8448 101 SHVECARFSPD--GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSG-----K 173 (482)
Q Consensus 101 ~~v~~~~~s~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg-----~ 173 (482)
.....++|+|+ +..|..+...+.|+.+|..+++...... . ......++++++++ |+.+...+ .
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~--------~~~P~giavd~dG~-lyVad~~~~~~~~g 208 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-N--------IGQCADVNFTLNGD-MVVVDDQSSDTNTG 208 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-C--------CSCEEEEEECTTCC-EEEEECCSCTTSEE
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-C--------CCCccEEEECCCCC-EEEEcCCCCcccce
Confidence 34678999984 4445555444889999998777554332 1 24688999999999 55544321 1
Q ss_pred EEEEEcCCCeE-eEEeecccCCCeEEEEEcc-CCCEEEEEECCCeEEEEeCCCCceEEEeec--cccceeEEEEcCCCCE
Q psy8448 174 VKIWKIATGQC-LRKLEKAHSLGVTCIQFSR-DNSQILTASFDTYVRIHGLKSGKMLKEFRG--HSSFVNDITFTADGHS 249 (482)
Q Consensus 174 i~iwd~~~~~~-~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~l~~~~~~~~ 249 (482)
+...+...+.. ...+ ........++++| ++.+.++-..++.|+.+|..+++....+.. .......++|+|+++.
T Consensus 209 v~~~~~~~~~~~~~~~--~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~ 286 (433)
T 4hw6_A 209 IYLFTRASGFTERLSL--CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDW 286 (433)
T ss_dssp EEEECGGGTTCCEEEE--EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSE
T ss_pred EEEEECCCCeeccccc--cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCE
Confidence 33333222211 0111 1233456788999 665555555678899999987765333221 1222347999999996
Q ss_pred EEEEe-CCCcEEEEECCC--Ccee--eeeecc-C--C---------CccceeEEEE---------cCCCCCEEEEEeCCC
Q psy8448 250 VLSAS-SDGTVKMWNLKT--TECT--STFKSL-G--A---------SDIAVNSIHL---------LPKNTEHFVVCNKTN 303 (482)
Q Consensus 250 l~~~~-~dg~i~i~d~~~--~~~~--~~~~~~-~--~---------~~~~v~~i~~---------~~~~~~~l~~~~~d~ 303 (482)
|+.+. ..+.|+.+++.. +... ..+... . + .-.....+++ .+++ .++++-...+
T Consensus 287 LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g-~lyvaD~~n~ 365 (433)
T 4hw6_A 287 AYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEY-DFYFCDRDSH 365 (433)
T ss_dssp EEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCE-EEEEEETTTT
T ss_pred EEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCC-cEEEEECCCC
Confidence 65554 567899988652 3211 111110 0 0 1123466888 5555 6777777778
Q ss_pred eEEEEEcCCcEEEEecCCc--------------ccCcCEEEEEEc-CCCCEEEEEeCCcEEEEEe
Q psy8448 304 TVVIMNMQGQIVRSLSSGK--------------REGGDFLCCTTS-PRGEWIYCVGEDMVLVVRL 353 (482)
Q Consensus 304 ~i~i~d~~~~~~~~~~~~~--------------~~~~~v~~~~~~-~~g~~l~~~~~dg~i~iw~ 353 (482)
.|+.++.+|......-... ..-.....++++ ++|.++++-..++.|+..+
T Consensus 366 ~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~ 430 (433)
T 4hw6_A 366 TVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIA 430 (433)
T ss_dssp EEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEe
Confidence 9999998774433332111 012346789999 5666666666677887443
No 271
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.73 E-value=0.00013 Score=65.81 Aligned_cols=233 Identities=12% Similarity=0.077 Sum_probs=126.5
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy8448 100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKI 179 (482)
Q Consensus 100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~ 179 (482)
...+.++.|.+++..+++| ..|.| +...+.++.-....... ......+.++.+.+ +. +++++.++.|.. ..
T Consensus 35 ~~~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~tW~~~~~~~----~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~ 105 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLVG-VNATL-METRDGGQTWEPRTLVL----DHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TT 105 (327)
T ss_dssp SSCEEEEEESSSSCEEEEE-TTTEE-EEESSTTSSCEECCCCC----SCCCCEEEEEEEET-TE-EEEEEETTEEEE-ES
T ss_pred CCcEEEEEECCCCcEEEEc-CCCeE-EEeCCCCCCCeECCCCC----CCCCccEEEEEecC-Ce-EEEEECCCeEEE-EC
Confidence 4579999998888777754 56755 33334343211111110 00134688899986 44 444555664433 22
Q ss_pred CCCeEeEEeec--ccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEe-eccccceeEEEEcCCCCEEEEEeCC
Q psy8448 180 ATGQCLRKLEK--AHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEF-RGHSSFVNDITFTADGHSVLSASSD 256 (482)
Q Consensus 180 ~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i~~l~~~~~~~~l~~~~~d 256 (482)
..++.-..... .....+..+.+.+++..++++ .++.|.. ..+.++.-... .+....+..+.+.+++.+++++. +
T Consensus 106 DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~-~ 182 (327)
T 2xbg_A 106 DGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSS-R 182 (327)
T ss_dssp STTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEET-T
T ss_pred CCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEEC-C
Confidence 33433333211 123457788877766555544 4665533 22334433222 23455788999999988776654 4
Q ss_pred CcEEE-EECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CcEEEEecCC-cccCcCEEEEEE
Q psy8448 257 GTVKM-WNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSG-KREGGDFLCCTT 333 (482)
Q Consensus 257 g~i~i-~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~-~~~~~~v~~~~~ 333 (482)
|.+.. .|- .++.-..+.. .....+..+.+.+++ .+ ++.+.+|.+++.+.+ ++....+... ......+.++++
T Consensus 183 G~~~~S~d~-gG~tW~~~~~--~~~~~~~~~~~~~~g-~~-~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~ 257 (327)
T 2xbg_A 183 GSFYSTWEP-GQTAWEPHNR--TTSRRLHNMGFTPDG-RL-WMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAY 257 (327)
T ss_dssp SSEEEEECT-TCSSCEEEEC--CSSSCEEEEEECTTS-CE-EEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEE
T ss_pred CcEEEEeCC-CCCceeECCC--CCCCccceeEECCCC-CE-EEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEe
Confidence 54443 332 1222122211 345578889998886 44 455667887776543 4444333322 111245888999
Q ss_pred cCCCCEEEEEeCCcEEE
Q psy8448 334 SPRGEWIYCVGEDMVLV 350 (482)
Q Consensus 334 ~~~g~~l~~~~~dg~i~ 350 (482)
.+++..++++. +|.++
T Consensus 258 ~~~~~~~~~g~-~g~i~ 273 (327)
T 2xbg_A 258 RTPNEVWLAGG-AGALL 273 (327)
T ss_dssp SSSSCEEEEES-TTCEE
T ss_pred cCCCEEEEEeC-CCeEE
Confidence 98877666554 56554
No 272
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.70 E-value=1.1e-05 Score=78.80 Aligned_cols=160 Identities=16% Similarity=0.210 Sum_probs=101.3
Q ss_pred CCEEEEEeCCCeEEEEecCCCceeeccccccccc-cccccccEEEEEEcCCCC-EEEEEe------CCCcEEEEEcCCCe
Q psy8448 112 GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDN-FMLMEEAVMSLAYSRDSE-MLASGS------QSGKVKIWKIATGQ 183 (482)
Q Consensus 112 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~h~~~i~~l~~~~~~~-~l~~~~------~dg~i~iwd~~~~~ 183 (482)
+..++.++.|+.|.-+|..+|+..-......... ......++.. .=..+++ .+++++ .++.|..+|..+++
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~-~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~ 195 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIV-KDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGE 195 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEE-ECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCC
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEe-CCCcCCcEEEEEeccccccCCCCEEEEEECCCCC
Confidence 4567788889999999999999876554332110 0001112211 0001233 555554 37899999999999
Q ss_pred EeEEeecccCCC-----------------------------------------eEEEEEccCCCEEEEEEC---------
Q psy8448 184 CLRKLEKAHSLG-----------------------------------------VTCIQFSRDNSQILTASF--------- 213 (482)
Q Consensus 184 ~~~~~~~~~~~~-----------------------------------------v~~i~~~~~~~~l~~~~~--------- 213 (482)
.+...... ... -..+++.|+...++++..
T Consensus 196 ~~W~~~~~-~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~ 274 (582)
T 1flg_A 196 EIWMRPFV-EGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWA 274 (582)
T ss_dssp EEEEEESS-TTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGG
T ss_pred EEeecCCC-ccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcc
Confidence 88765321 000 013566677777777663
Q ss_pred -----------C----CeEEEEeCCCCceEEEeec--cc--------cceeEEEEc-CCCC---EEEEEeCCCcEEEEEC
Q psy8448 214 -----------D----TYVRIHGLKSGKMLKEFRG--HS--------SFVNDITFT-ADGH---SVLSASSDGTVKMWNL 264 (482)
Q Consensus 214 -----------d----g~i~i~d~~~~~~~~~~~~--~~--------~~i~~l~~~-~~~~---~l~~~~~dg~i~i~d~ 264 (482)
| +.|..+|.++++.+..++. |. .++ -+... .+|+ .++.++.+|.++++|.
T Consensus 275 r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~-l~~~~~~~G~~~~~v~~~~~~G~l~~lD~ 353 (582)
T 1flg_A 275 RTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELV-LFDYKAKDGKIVKATAHADRNGFFYVVDR 353 (582)
T ss_dssp GSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCE-EEEEECSSSCEEEEEEEECTTSEEEEEET
T ss_pred cccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcE-EEeeecCCCCEEEEEEEECCCceEEEEEC
Confidence 2 5899999999999887753 21 122 12222 4664 6788999999999999
Q ss_pred CCCceeeeee
Q psy8448 265 KTTECTSTFK 274 (482)
Q Consensus 265 ~~~~~~~~~~ 274 (482)
++++.+..+.
T Consensus 354 ~tG~~lw~~~ 363 (582)
T 1flg_A 354 SNGKLQNAFP 363 (582)
T ss_dssp TTCCEEEEEE
T ss_pred CCCCEecccc
Confidence 9999876654
No 273
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.70 E-value=2.5e-05 Score=70.01 Aligned_cols=223 Identities=9% Similarity=0.024 Sum_probs=135.8
Q ss_pred EEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCeEeEEeeccc
Q psy8448 114 YLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASG-SQSGKVKIWKIATGQCLRKLEKAH 192 (482)
Q Consensus 114 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~ 192 (482)
+|+.+. ...|+..++........+.... -..+.+++|.+.+..|+.+ ...+.|..+++..+.....+....
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~-------~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~ 77 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGG-------LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG 77 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEE-------EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEEC
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecC-------CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCC
Confidence 344433 4679999987654221111111 2357799999865555555 466789999987663222221222
Q ss_pred CCCeEEEEEccCCCEEE-EEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeC--CCcEEEEECCCCce
Q psy8448 193 SLGVTCIQFSRDNSQIL-TASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASS--DGTVKMWNLKTTEC 269 (482)
Q Consensus 193 ~~~v~~i~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--dg~i~i~d~~~~~~ 269 (482)
-.....+++.+.+..|+ +-...+.|.++++........+.........++++|.+..|+.+.. .+.|..+++....
T Consensus 78 l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~- 156 (318)
T 3sov_A 78 LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS- 156 (318)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-
T ss_pred CCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-
Confidence 34567788987555554 4455678999998654333333344456789999997666766653 5788888876433
Q ss_pred eeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEE
Q psy8448 270 TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVL 349 (482)
Q Consensus 270 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i 349 (482)
...+.. ..-...+.++++|++..++++-+..+.|..++++|.....+.... ......+++.. +..+.+-...+.|
T Consensus 157 ~~~~~~--~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--~~~P~glav~~-~~lywtd~~~~~V 231 (318)
T 3sov_A 157 RFIIIN--SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFE-DILYWTDWSTHSI 231 (318)
T ss_dssp CEEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSC--CSCEEEEEEET-TEEEEEETTTTEE
T ss_pred eEEEEE--CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCC--CCCceEEEEeC-CEEEEEecCCCeE
Confidence 222211 222345799999977567777777889999999765544443311 34456777753 3344455556777
Q ss_pred E
Q psy8448 350 V 350 (482)
Q Consensus 350 ~ 350 (482)
.
T Consensus 232 ~ 232 (318)
T 3sov_A 232 L 232 (318)
T ss_dssp E
T ss_pred E
Confidence 7
No 274
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.70 E-value=3.8e-05 Score=78.39 Aligned_cols=236 Identities=14% Similarity=0.154 Sum_probs=147.2
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy8448 100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKI 179 (482)
Q Consensus 100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~ 179 (482)
...|.++...++|.+. .|+.++-|..|+..++..... .... ......|.++...+++. |..|+.++-+..+|.
T Consensus 362 ~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~-~~~~----~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~ 434 (781)
T 3v9f_A 362 NKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVAIYN-KENR----ELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNT 434 (781)
T ss_dssp SSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEEECC----------CCCSBEEEEEECTTSC-EEEEETTEEEEEECS
T ss_pred CcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeEEEc-cCCC----CCCCcceEEEEECCCCC-EEEEeccCCEEEEcC
Confidence 3569999999888755 455455588999776543221 1100 11246799999888876 555677677889998
Q ss_pred CCCeEeEEeec--ccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeecc-----ccceeEEEEcCCCCEEEE
Q psy8448 180 ATGQCLRKLEK--AHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGH-----SSFVNDITFTADGHSVLS 252 (482)
Q Consensus 180 ~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~i~~l~~~~~~~~l~~ 252 (482)
.+++.. .+.. .....|.++...+++. |..|+. +.|..+|..+++........ ...|.++...++|++. .
T Consensus 435 ~~~~~~-~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lW-i 510 (781)
T 3v9f_A 435 RLKKFQ-IIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFW-I 510 (781)
T ss_dssp SSCEEE-ECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEE-E
T ss_pred CCCcEE-EeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEE-E
Confidence 766543 2311 1345788998887764 666666 56889998776543322211 3578999999988854 4
Q ss_pred EeCCCcEEEEECCCCceeeeeecc-CCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCc-ccCcCEEE
Q psy8448 253 ASSDGTVKMWNLKTTECTSTFKSL-GASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGK-REGGDFLC 330 (482)
Q Consensus 253 ~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~v~~ 330 (482)
|+.++-|..||..+++.. .+... ......|.++...+++ . +..++.+|.+..||........+.... .....|.+
T Consensus 511 gt~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g-~-lWi~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~ 587 (781)
T 3v9f_A 511 GTFGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKG-Q-MWLATGEGLVCFPSARNFDYQVFQRKEGLPNTHIRA 587 (781)
T ss_dssp EESSSCEEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTS-C-EEEEETTEEEEESCTTTCCCEEECGGGTCSCCCCCE
T ss_pred EEcCCCEEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCC-C-EEEEECCCceEEECCCCCcEEEccccCCCCCceEEE
Confidence 555344888998766433 33211 1224568888888877 4 444555665588888544444443221 12345778
Q ss_pred EEEcCCCCEEEEEeCCcEEE
Q psy8448 331 CTTSPRGEWIYCVGEDMVLV 350 (482)
Q Consensus 331 ~~~~~~g~~l~~~~~dg~i~ 350 (482)
+...++|.+.+ ++.+|..+
T Consensus 588 i~~d~~g~lW~-~t~~Gl~~ 606 (781)
T 3v9f_A 588 ISEDKNGNIWA-STNTGISC 606 (781)
T ss_dssp EEECSSSCEEE-ECSSCEEE
T ss_pred EEECCCCCEEE-EcCCceEE
Confidence 88988887555 45666443
No 275
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.67 E-value=1.4e-05 Score=71.39 Aligned_cols=191 Identities=11% Similarity=0.026 Sum_probs=115.2
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECC-C-eEEEEeCCCCceE
Q psy8448 151 EAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFD-T-YVRIHGLKSGKML 228 (482)
Q Consensus 151 ~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-g-~i~i~d~~~~~~~ 228 (482)
.....++|+++++++++-..++.|..||.... ....+. .......+++.++++.+++.... + .|..+|..+++..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~--~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~ 108 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT--VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE 108 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE--CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe--CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEE
Confidence 35678999999986666667889999997653 333332 33468899999999865554432 2 4777787777654
Q ss_pred EEee-ccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCce-eeeee------ccCCCccceeEEEEcCCCCCEEEEEe
Q psy8448 229 KEFR-GHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTEC-TSTFK------SLGASDIAVNSIHLLPKNTEHFVVCN 300 (482)
Q Consensus 229 ~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~------~~~~~~~~v~~i~~~~~~~~~l~~~~ 300 (482)
.... ........++..+++..+++-..++.|.++|..+++. +.... .....-...+.+ +|++..++++-.
T Consensus 109 ~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~ 186 (306)
T 2p4o_A 109 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNT 186 (306)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEET
T ss_pred EEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeC
Confidence 3222 1222345556555554444444588899999876431 11000 000111233445 777755666667
Q ss_pred CCCeEEEEEcCC--cE--EEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448 301 KTNTVVIMNMQG--QI--VRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLV 350 (482)
Q Consensus 301 ~d~~i~i~d~~~--~~--~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~ 350 (482)
..+.|..+++.+ .. ...+.. ......++++++|++.++....+.|.
T Consensus 187 ~~~~I~~~~~~~~g~~~~~~~~~~----~~~P~gi~vd~dG~l~va~~~~~~V~ 236 (306)
T 2p4o_A 187 EKMLLLRIPVDSTDKPGEPEIFVE----QTNIDDFAFDVEGNLYGATHIYNSVV 236 (306)
T ss_dssp TTTEEEEEEBCTTSCBCCCEEEEE----SCCCSSEEEBTTCCEEEECBTTCCEE
T ss_pred CCCEEEEEEeCCCCCCCccEEEec----cCCCCCeEECCCCCEEEEeCCCCeEE
Confidence 788999999853 21 111111 12235588899998776666677777
No 276
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.60 E-value=3.5e-06 Score=84.08 Aligned_cols=238 Identities=13% Similarity=0.053 Sum_probs=136.6
Q ss_pred CCCcEEEEEEcCCCCEEEEEeC-CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe-CC-----
Q psy8448 99 SKSHVECARFSPDGQYLITGSV-DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS-QS----- 171 (482)
Q Consensus 99 h~~~v~~~~~s~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~-~d----- 171 (482)
+.....++++.+++++++.|+. +..+.+||..+++-...-.... ...-.+++..++++.++.|+ .+
T Consensus 241 ~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~-------~R~~~s~~~~~dg~iyv~GG~~~~~~~~ 313 (656)
T 1k3i_A 241 HDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQV-------ARGYQSSATMSDGRVFTIGGSWSGGVFE 313 (656)
T ss_dssp CCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSS-------CCSSCEEEECTTSCEEEECCCCCSSSCC
T ss_pred CCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCc-------cccccceEEecCCeEEEEeCcccCCccc
Confidence 3333445778899999999984 4589999998776443322111 11123455667899999988 34
Q ss_pred CcEEEEEcCCCeEeEEee---cccCCCeEEEEEccCCCEEEEEECC---------CeEEEEeCCCCceEEEeecccc---
Q psy8448 172 GKVKIWKIATGQCLRKLE---KAHSLGVTCIQFSRDNSQILTASFD---------TYVRIHGLKSGKMLKEFRGHSS--- 236 (482)
Q Consensus 172 g~i~iwd~~~~~~~~~~~---~~~~~~v~~i~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~--- 236 (482)
..+.+||..+++....-. ......-....+..++..++.++.+ ..+..||..+.........+..
T Consensus 314 ~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~ 393 (656)
T 1k3i_A 314 KNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRG 393 (656)
T ss_dssp CCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTE
T ss_pred ccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccc
Confidence 579999998776433200 0000000001122345555555444 3577888887764433322211
Q ss_pred ------ceeEEEEcC-CCCEEEEEeCCC-----------cEEEEECCCCceeeee-eccCCCccceeEEEEcCCCCCEEE
Q psy8448 237 ------FVNDITFTA-DGHSVLSASSDG-----------TVKMWNLKTTECTSTF-KSLGASDIAVNSIHLLPKNTEHFV 297 (482)
Q Consensus 237 ------~i~~l~~~~-~~~~l~~~~~dg-----------~i~i~d~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~l~ 297 (482)
.-.++.+.. +++.++.|+.++ .|.+||..+....... ... .....-.+....|++ .+++
T Consensus 394 ~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~m-p~~R~~~~~~~l~~g-~i~v 471 (656)
T 1k3i_A 394 VAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGL-YFARTFHTSVVLPDG-STFI 471 (656)
T ss_dssp ECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCC-SSCCBSCEEEECTTS-CEEE
T ss_pred cCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCC-CCCcccCCeEECCCC-CEEE
Confidence 223444443 677777777432 5788888776544332 111 122223455667777 7888
Q ss_pred EEeCC-----------CeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeC
Q psy8448 298 VCNKT-----------NTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGE 345 (482)
Q Consensus 298 ~~~~d-----------~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~ 345 (482)
.|+.+ ..+.+||........+...........+..+.|+|+.++.|+.
T Consensus 472 ~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 472 TGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp ECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred ECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 88754 4689999965555444433222333345667899999999985
No 277
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.50 E-value=0.00016 Score=65.68 Aligned_cols=205 Identities=10% Similarity=0.056 Sum_probs=125.3
Q ss_pred CcEEEEEEcCCCCEEE-EEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEE-EEEeCCCcEEEEE
Q psy8448 101 SHVECARFSPDGQYLI-TGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEML-ASGSQSGKVKIWK 178 (482)
Q Consensus 101 ~~v~~~~~s~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l-~~~~~dg~i~iwd 178 (482)
..+..++|++....|. +-...+.|..+++..+.....+... -.....+++.+.+..| ++-...+.|.+.+
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~--------~~~p~glavd~~~g~ly~~d~~~~~I~~~~ 144 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG--------LESPGGLAVDWVHDKLYWTDSGTSRIEVAN 144 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--------CSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCC--------CCCccEEEEecCCCeEEEEcCCCCeEEEEc
Confidence 4578999998655554 4456788999998765533222111 1345788898755545 4445667899999
Q ss_pred cCCCeEeEEeecccCCCeEEEEEccCCCEEEEEEC-C-CeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEe-C
Q psy8448 179 IATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF-D-TYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSAS-S 255 (482)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~ 255 (482)
+........+ .........+++.|.+..|+.+.. . +.|..+++............-.....|+++|++..|..+. .
T Consensus 145 ~dG~~~~~l~-~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~ 223 (349)
T 3v64_C 145 LDGAHRKVLL-WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAK 223 (349)
T ss_dssp TTSCSCEEEE-CTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETT
T ss_pred CCCCceEEEE-eCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECC
Confidence 8654333222 333456789999996666655543 4 6899898864433222222344578999998777676655 4
Q ss_pred CCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEec
Q psy8448 256 DGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLS 319 (482)
Q Consensus 256 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~ 319 (482)
.+.|..+|+........+. ........+++. .+ .++++-...+.|..++. +|+....+.
T Consensus 224 ~~~I~~~~~dG~~~~~~~~---~~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 224 HHVIERANLDGSHRKAVIS---QGLPHPFAITVF-ED-SLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp TTEEEEEETTSCSCEEEEC---SSCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCEEEEEeCCCCceEEEEe---CCCCCceEEEEE-CC-EEEEecCCCCeEEEEEccCCCccEEec
Confidence 6789999987543222222 122334566663 33 56666666777877774 555444443
No 278
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.49 E-value=4.2e-05 Score=71.71 Aligned_cols=155 Identities=11% Similarity=0.128 Sum_probs=102.8
Q ss_pred cEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCC-----eEEEEeCCCC
Q psy8448 152 AVMSLAYSR-DSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDT-----YVRIHGLKSG 225 (482)
Q Consensus 152 ~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg-----~i~i~d~~~~ 225 (482)
....|+++| ++..|+++...+.|+.+|+..+...... ........++|++++++|+++...+ .+..++. .+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~--~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY--SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE--CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe--cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CC
Confidence 467899998 4556777665588999998776654433 2445688999999999777766421 3444443 33
Q ss_pred ceE--EEeeccccceeEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC
Q psy8448 226 KML--KEFRGHSSFVNDITFTA-DGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT 302 (482)
Q Consensus 226 ~~~--~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d 302 (482)
... ..+. .......++++| ++.++++-..++.|..++...+....... . ........++++|++..++++-...
T Consensus 215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~-~-~~~~~P~gia~~pdG~~lyv~d~~~ 291 (430)
T 3tc9_A 215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFT-I-QDSGWEFHIQFHPSGNYAYIVVVNQ 291 (430)
T ss_dssp TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEE-C-SSSSCCEEEEECTTSSEEEEEETTT
T ss_pred ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEE-c-CCCCcceeEEEcCCCCEEEEEECCC
Confidence 221 2222 233467889999 67766666677899999998765422222 1 1223467899999994366666778
Q ss_pred CeEEEEEcCC
Q psy8448 303 NTVVIMNMQG 312 (482)
Q Consensus 303 ~~i~i~d~~~ 312 (482)
+.|..++.++
T Consensus 292 ~~I~~~~~d~ 301 (430)
T 3tc9_A 292 HYILRSDYDW 301 (430)
T ss_dssp TEEEEEEEET
T ss_pred CEEEEEeCCc
Confidence 8999988753
No 279
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.48 E-value=0.00035 Score=62.52 Aligned_cols=207 Identities=10% Similarity=0.015 Sum_probs=124.8
Q ss_pred CCcEEEEEEcCCCCEE-EEEeCCCeEEEEecCCC---ceeeccccccccccccccccEEEEEEcCCCCEEE-EEeCCCcE
Q psy8448 100 KSHVECARFSPDGQYL-ITGSVDGFIEVWNFTTG---KIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLA-SGSQSGKV 174 (482)
Q Consensus 100 ~~~v~~~~~s~~~~~l-~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~-~~~~dg~i 174 (482)
-..+..++|++.++.| ++-..++.|..+++... .....+... .-.....+++.+.+..|+ +-...+.|
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~-------~~~~p~glavd~~~~~ly~~d~~~~~I 101 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-------DIQAPDGLAVDWIHSNIYWTDSVLGTV 101 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS-------SCSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeC-------CCCCcCEEEEeecCCeEEEEECCCCEE
Confidence 4567899999866555 45556789999998751 111111100 013457888887554454 44567899
Q ss_pred EEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECC--CeEEEEeCCCCceEEEe-eccccceeEEEEcCCCCEEE
Q psy8448 175 KIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFD--TYVRIHGLKSGKMLKEF-RGHSSFVNDITFTADGHSVL 251 (482)
Q Consensus 175 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~-~~~~~~i~~l~~~~~~~~l~ 251 (482)
.++++........+ .........+++.|.+..|+.+... +.|...++.. +....+ ...-.....|++++++..|+
T Consensus 102 ~~~~~~g~~~~~~~-~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~~P~gla~d~~~~~lY 179 (316)
T 1ijq_A 102 SVADTKGVKRKTLF-RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLY 179 (316)
T ss_dssp EEEETTSSSEEEEE-ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEE
T ss_pred EEEeCCCCceEEEE-ECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEECCCCCceEEEEeccCCEEE
Confidence 99998654333222 3334567899999977766666543 6888888753 333333 22345678999999877776
Q ss_pred EEe-CCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEe
Q psy8448 252 SAS-SDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSL 318 (482)
Q Consensus 252 ~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~ 318 (482)
.+. ..+.|..+|+.... ...+............+++.. + .++++-...+.|..++. +++.+..+
T Consensus 180 ~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~~-~-~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 180 WVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFE-D-KVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp EEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEET-T-EEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEEC-C-EEEEEECCCCeEEEEeCCCCcceEEE
Confidence 665 45789999987433 333321111122345677643 3 56666667778888886 55544444
No 280
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.46 E-value=0.00023 Score=71.58 Aligned_cols=218 Identities=10% Similarity=0.003 Sum_probs=131.6
Q ss_pred CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCe---EeEEeecccCCCe
Q psy8448 121 DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASG-SQSGKVKIWKIATGQ---CLRKLEKAHSLGV 196 (482)
Q Consensus 121 dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~---~~~~~~~~~~~~v 196 (482)
...|+..++.......... ....+.+|+|.+....|+.+ ...+.|+.+++.... ....+........
T Consensus 403 ~~~Ir~i~l~~~~~~~l~~---------~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P 473 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTSLIP---------NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 473 (791)
T ss_dssp BSSEEEECTTSCCCEEEEC---------SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred ccceeEeeccCCcceeeec---------CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCc
Confidence 3557777776554332221 12467899999865555554 456788888886531 1122212234456
Q ss_pred EEEEEccCCCEEEEE-ECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeC--CCcEEEEECCCCceeeee
Q psy8448 197 TCIQFSRDNSQILTA-SFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASS--DGTVKMWNLKTTECTSTF 273 (482)
Q Consensus 197 ~~i~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~ 273 (482)
..|++.+.+..|+.+ ...+.|.+.++........+.........|+++|.+..|+.+.. .+.|...++........+
T Consensus 474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv 553 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 553 (791)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred ceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEE
Confidence 789998877555544 55679999998755443333334456889999998766766653 267999998754433322
Q ss_pred eccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEE-eCCcEEEEE
Q psy8448 274 KSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCV-GEDMVLVVR 352 (482)
Q Consensus 274 ~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~-~~dg~i~iw 352 (482)
. ..-.....|++.+.+..++++-...+.|..++++|.....+............+++. +.+|+.. ...+.|...
T Consensus 554 ~---~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~ 628 (791)
T 3m0c_C 554 T---ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSA 628 (791)
T ss_dssp C---SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred e---CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEE
Confidence 2 223467899999887566666666788999999776555544321112334566664 3355544 445666633
No 281
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.46 E-value=0.00013 Score=67.37 Aligned_cols=206 Identities=10% Similarity=0.043 Sum_probs=127.0
Q ss_pred CCcEEEEEEcCCCCEE-EEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEE-EeCCCcEEEE
Q psy8448 100 KSHVECARFSPDGQYL-ITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLAS-GSQSGKVKIW 177 (482)
Q Consensus 100 ~~~v~~~~~s~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~-~~~dg~i~iw 177 (482)
...+..++|++.+..| ++-...+.|..+++..+.....+... ......+++.+.+..|+. -...+.|.+.
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~--------~~~p~glavd~~~g~lY~~d~~~~~I~~~ 186 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG--------LESPGGLAVDWVHDKLYWTDSGTSRIEVA 186 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS--------CSCCCCEEEETTTTEEEEEETTTTEEEEC
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC--------CCCccEEEEEeCCCeEEEEcCCCCeEEEE
Confidence 3457889999855555 45456788999998765533222211 124567888875555544 4456788888
Q ss_pred EcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEEC-C-CeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEe-
Q psy8448 178 KIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF-D-TYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSAS- 254 (482)
Q Consensus 178 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~- 254 (482)
++........+ .........+++.|.+..|+.+.. . +.|..+++............-.....|+++|++..|+.+.
T Consensus 187 ~~dg~~~~~l~-~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~ 265 (386)
T 3v65_B 187 NLDGAHRKVLL-WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA 265 (386)
T ss_dssp BTTSCSCEEEE-CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET
T ss_pred eCCCCceEEee-cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC
Confidence 87654333333 333456789999997766666553 3 6888888865433333333344578999998777666654
Q ss_pred CCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEec
Q psy8448 255 SDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLS 319 (482)
Q Consensus 255 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~ 319 (482)
..+.|..+|+........+. ........+++. .+ .++++....+.|..++. +|+....+.
T Consensus 266 ~~~~I~~~d~dG~~~~~~~~---~~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 266 KHHVIERANLDGSHRKAVIS---QGLPHPFAITVF-ED-SLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp TTTEEEEECTTSCSCEEEEC---SSCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCEEEEEeCCCCeeEEEEE---CCCCCceEEEEE-CC-EEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 46779999987543222222 122344567773 33 56666667788888884 665555444
No 282
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.45 E-value=1.3e-05 Score=81.15 Aligned_cols=196 Identities=12% Similarity=0.100 Sum_probs=116.7
Q ss_pred cEEEEEEc-CCCCEEEEEeC-CC----cEEEEEcCCC-eEeEEeecccCCCeEEEEEccCCCEEEEEECC-----CeEEE
Q psy8448 152 AVMSLAYS-RDSEMLASGSQ-SG----KVKIWKIATG-QCLRKLEKAHSLGVTCIQFSRDNSQILTASFD-----TYVRI 219 (482)
Q Consensus 152 ~i~~l~~~-~~~~~l~~~~~-dg----~i~iwd~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-----g~i~i 219 (482)
.+...+|| |||++|+.+.. +| .|+++|+.++ +.+... -......++|+||++.|+....+ ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~---~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK---VSGTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC---EEEECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc---ccCceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57889999 99998887643 23 4999999988 632110 01113467899999888877655 36888
Q ss_pred EeCCCCce--EEEee-ccccceeEEEEcCCCCEEEEEeC---CCcEEEEECCCCc-ee--eeeeccCCCccceeEEEEcC
Q psy8448 220 HGLKSGKM--LKEFR-GHSSFVNDITFTADGHSVLSASS---DGTVKMWNLKTTE-CT--STFKSLGASDIAVNSIHLLP 290 (482)
Q Consensus 220 ~d~~~~~~--~~~~~-~~~~~i~~l~~~~~~~~l~~~~~---dg~i~i~d~~~~~-~~--~~~~~~~~~~~~v~~i~~~~ 290 (482)
+++.+++. ...+. ........+.|+|||++|+..+. ...|.++|+.++. .. ..+.. .......++.|+.
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~--~~~~~~~s~~~~~ 329 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP--REKGVRYDVQMHG 329 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC--CCTTCCEEEEEET
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec--CCCCceEEEeeee
Confidence 99887642 22332 22334668899999999887653 3458889988752 12 22211 2334455555544
Q ss_pred CCCCEEEEEeCC----CeEEEEEcCC-cEEEE-ecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448 291 KNTEHFVVCNKT----NTVVIMNMQG-QIVRS-LSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ 355 (482)
Q Consensus 291 ~~~~~l~~~~~d----~~i~i~d~~~-~~~~~-~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~ 355 (482)
+..+++....+ ..|..+++.. ..... +..+. ....+..+.+. .+.++++...++..++|.++
T Consensus 330 -g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~-~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~d 397 (751)
T 2xe4_A 330 -TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHS-EDVFMESIAVR-SNYLVVAGRRAGLTRIWTMM 397 (751)
T ss_dssp -TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCC-SSEEEEEEEEC-SSEEEEEEEETTEEEEEEEE
T ss_pred -CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCC-CCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEe
Confidence 43555555544 2566666642 22222 22121 12244556665 33455677778877766543
No 283
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.44 E-value=0.00039 Score=62.62 Aligned_cols=233 Identities=11% Similarity=0.075 Sum_probs=128.2
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy8448 100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKI 179 (482)
Q Consensus 100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~ 179 (482)
...+.++.|++ +..++. +..+.|.. ..+.|+.-....... .+...+..+.+.+++..++++ .+|.|.. ..
T Consensus 79 ~~~~~~i~~~~-~~~~~~-g~~g~i~~-S~DgG~tW~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~ 148 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWIV-GEPPIMLH-TTDGGQSWSQIPLDP-----KLPGSPRLIKALGNGSAEMIT-NVGAIYR-TK 148 (327)
T ss_dssp CCEEEEEEEET-TEEEEE-EETTEEEE-ESSTTSSCEECCCCT-----TCSSCEEEEEEEETTEEEEEE-TTCCEEE-ES
T ss_pred CccEEEEEecC-CeEEEE-ECCCeEEE-ECCCCCCceECcccc-----CCCCCeEEEEEECCCCEEEEe-CCccEEE-Ec
Confidence 44688999986 444444 45564443 333343222211110 012346778777777655554 4565422 12
Q ss_pred CCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEE-EeC--CCCceEEEeeccccceeEEEEcCCCCEEEEEeCC
Q psy8448 180 ATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRI-HGL--KSGKMLKEFRGHSSFVNDITFTADGHSVLSASSD 256 (482)
Q Consensus 180 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i-~d~--~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d 256 (482)
..++.-..........+..+++.+++.+++++. +|.+.. .|- .+.+.+. ......+..+.+.++++.+ .++.+
T Consensus 149 DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~ 224 (327)
T 2xbg_A 149 DSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNG 224 (327)
T ss_dssp STTSSEEEEECSCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETT
T ss_pred CCCCCCEEeecCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCC
Confidence 234333333344556789999999888776665 454444 342 2333332 2345678899999988755 55567
Q ss_pred CcEEEEECCCCceeeeeecc-CCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEc
Q psy8448 257 GTVKMWNLKTTECTSTFKSL-GASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTS 334 (482)
Q Consensus 257 g~i~i~d~~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~ 334 (482)
|.+++.+...++.-..+... ......+..+.+.+++ .++++ +.++.+ ++.. .|+....+.........+.++.|.
T Consensus 225 G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~-~~~~~-g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~ 301 (327)
T 2xbg_A 225 GKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPN-EVWLA-GGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFF 301 (327)
T ss_dssp TEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSS-CEEEE-ESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEE
T ss_pred ceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCC-EEEEE-eCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEE
Confidence 88777653334332222211 0122357889898865 55554 446766 3444 355554444221113456788887
Q ss_pred CCCCEEEEEeCCcEEE
Q psy8448 335 PRGEWIYCVGEDMVLV 350 (482)
Q Consensus 335 ~~g~~l~~~~~dg~i~ 350 (482)
+++ .+++++.+|.|.
T Consensus 302 ~~~-~~~~~G~~G~i~ 316 (327)
T 2xbg_A 302 SPD-QGFILGQKGILL 316 (327)
T ss_dssp ETT-EEEEECSTTEEE
T ss_pred CCC-ceEEEcCCceEE
Confidence 544 566778889877
No 284
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.41 E-value=0.00061 Score=63.17 Aligned_cols=209 Identities=11% Similarity=0.027 Sum_probs=127.9
Q ss_pred CCCcEEEEEEcCCCCEEE-EEeCCCeEEEEecCCCc----eeeccccccccccccccccEEEEEEcCC-CCEEEEEeCCC
Q psy8448 99 SKSHVECARFSPDGQYLI-TGSVDGFIEVWNFTTGK----IRKDLKYQAQDNFMLMEEAVMSLAYSRD-SEMLASGSQSG 172 (482)
Q Consensus 99 h~~~v~~~~~s~~~~~l~-s~~~dg~v~iwd~~~~~----~~~~~~~~~~~~~~~h~~~i~~l~~~~~-~~~l~~~~~dg 172 (482)
.-..+..++|++.+..|. +-...+.|+.+++.... ....+... -.....+++.+. +++.++-...+
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~--------~~~p~glavD~~~~~lY~~d~~~~ 181 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD--------IQAPDGLAVDWIHSNIYWTDSVLG 181 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSS--------CSCEEEEEEETTTTEEEEEETTTT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCC--------CCCcccEEEEecCCceEEEECCCC
Confidence 345788999998655554 44467889999886522 11111101 245788999884 44444445678
Q ss_pred cEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEEC--CCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEE
Q psy8448 173 KVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF--DTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSV 250 (482)
Q Consensus 173 ~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l 250 (482)
.|.+.++........+ .........+++.|.+..|+.+.. .+.|...++............-.....|++++++..|
T Consensus 182 ~I~~~~~~g~~~~~l~-~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~l 260 (400)
T 3p5b_L 182 TVSVADTKGVKRKTLF-RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRL 260 (400)
T ss_dssp EEEEECTTTCSEEEEE-ECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEE
T ss_pred eEEEEeCCCCceEEEE-eCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEE
Confidence 8999998755443333 334455789999997767766653 3689999986544333333333567899999887777
Q ss_pred EEEe-CCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEec
Q psy8448 251 LSAS-SDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLS 319 (482)
Q Consensus 251 ~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~ 319 (482)
+.+. ..+.|..+|+..... ..+......-.....+++. +..++++-...+.|..++. +|+.+..+.
T Consensus 261 Y~aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 261 YWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EEEETTTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred EEEECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 7665 467899999875433 3332111112233466663 3256666667778888885 665555544
No 285
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.40 E-value=0.00049 Score=64.74 Aligned_cols=243 Identities=12% Similarity=0.060 Sum_probs=141.4
Q ss_pred cEEEEEEcC-CCCEE-EEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEE-------cCCCCEEEEEeCCC
Q psy8448 102 HVECARFSP-DGQYL-ITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAY-------SRDSEMLASGSQSG 172 (482)
Q Consensus 102 ~v~~~~~s~-~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~-------~~~~~~l~~~~~dg 172 (482)
....|+|+| +...| ++....+.|++.|+.++........... .-.....++| +++++.|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~-----~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~ 214 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTI-----PTNRIRSIAFNKKIEGYADEAEYMIVAIDYD 214 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTS-----SCSBEEEEEECCCBTTTBCTTCEEEEEECCC
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCcc-----ccCCCcEEEEeecccccCCCCCEEEEEeCCC
Confidence 467899998 34444 4444456799999888776544332110 1246899999 99999777766543
Q ss_pred -------cEEEEEcCC-CeEe-----EEeecccCCCeEEEEEccCCCE-EEEEECCCeEEEEeCC-------CCce----
Q psy8448 173 -------KVKIWKIAT-GQCL-----RKLEKAHSLGVTCIQFSRDNSQ-ILTASFDTYVRIHGLK-------SGKM---- 227 (482)
Q Consensus 173 -------~i~iwd~~~-~~~~-----~~~~~~~~~~v~~i~~~~~~~~-l~~~~~dg~i~i~d~~-------~~~~---- 227 (482)
.|.+++... +... ..+. . -.....++++|++.. +++-..++.|..+|+. ++..
T Consensus 215 ~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~ 292 (496)
T 3kya_A 215 GKGDESPSVYIIKRNADGTFDDRSDIQLIA-A-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPI 292 (496)
T ss_dssp TTGGGEEEEEEEECCTTSCCSTTSCEEEEE-E-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCB
T ss_pred CCcccCceEEEEecCCCCceeecccceeec-c-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccc
Confidence 266665333 2221 1221 1 123457788995444 4555577789999987 4543
Q ss_pred -------EEE-ee-ccccceeEEEEcCCCCEEEEE-eCCCcEEEEECC--CCcee--eeeecc---CCC---------cc
Q psy8448 228 -------LKE-FR-GHSSFVNDITFTADGHSVLSA-SSDGTVKMWNLK--TTECT--STFKSL---GAS---------DI 281 (482)
Q Consensus 228 -------~~~-~~-~~~~~i~~l~~~~~~~~l~~~-~~dg~i~i~d~~--~~~~~--~~~~~~---~~~---------~~ 281 (482)
... +. +.......|+|+|+++.|+.+ +..+.|+.++.. .+... ..+... .+. -.
T Consensus 293 ~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~ 372 (496)
T 3kya_A 293 VKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMN 372 (496)
T ss_dssp GGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCS
T ss_pred ccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccC
Confidence 112 11 223446799999999965554 456788886653 33210 122110 000 01
Q ss_pred cee-EEEEc-------CCCCCEEEEEeCCCeEEEEEcCCcEEEEecCC-c------------c--------cCcCEEEEE
Q psy8448 282 AVN-SIHLL-------PKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSG-K------------R--------EGGDFLCCT 332 (482)
Q Consensus 282 ~v~-~i~~~-------~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~------------~--------~~~~v~~~~ 332 (482)
... .++.. +.+ .++++-.....|+.++.+|. +.++... . . .-.....++
T Consensus 373 ~P~~gv~vd~~~~~~~~~g-~lyVaD~~N~rIr~i~~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIa 450 (496)
T 3kya_A 373 NPCQGVFVKNPDYTGEEEY-DFYFVDRLNFCVRKVTPEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLV 450 (496)
T ss_dssp SEEEEEEEECTTCCSSCCE-EEEEEEGGGTEEEEECTTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEE
T ss_pred CCeEEEEEccccccccCCC-eEEEEECCCCEEEEEeCCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEE
Confidence 123 34443 334 67777777889999997774 4444321 0 0 113467899
Q ss_pred EcCC-CCEEEEEeCCcEEEEEe
Q psy8448 333 TSPR-GEWIYCVGEDMVLVVRL 353 (482)
Q Consensus 333 ~~~~-g~~l~~~~~dg~i~iw~ 353 (482)
++++ |.+.++=..+..|+.++
T Consensus 451 vd~~~g~lyVaD~~N~rIrki~ 472 (496)
T 3kya_A 451 YDDVKEMFYVHDQVGHTIRTIS 472 (496)
T ss_dssp EETTTTEEEEEETTTTEEEEEE
T ss_pred EECCCCEEEEEeCCCCEEEEEE
Confidence 9997 66666666778888443
No 286
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.39 E-value=0.0002 Score=67.18 Aligned_cols=194 Identities=7% Similarity=0.017 Sum_probs=117.9
Q ss_pred cEEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCC-----eEEEEeCCC
Q psy8448 152 AVMSLAYSRD--SEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDT-----YVRIHGLKS 224 (482)
Q Consensus 152 ~i~~l~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg-----~i~i~d~~~ 224 (482)
....++|.|+ +..|+.+...+.|+.+|+.++...... ........+++++++. |+++...+ .+...+...
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~--~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT--TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC--CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee--cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 4678999984 445666655489999998877665443 2445689999999999 55555322 244444322
Q ss_pred Cce-EEEeeccccceeEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC
Q psy8448 225 GKM-LKEFRGHSSFVNDITFTA-DGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT 302 (482)
Q Consensus 225 ~~~-~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d 302 (482)
+.. ...+. .......++++| ++.++++-..++.|+.+|..++.....+... .....-..++++|++..++++-...
T Consensus 217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~-~~~~~~~~ia~dpdG~~LYvad~~~ 294 (433)
T 4hw6_A 217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMM-DTKGSNFHIVWHPTGDWAYIIYNGK 294 (433)
T ss_dssp TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEEC-SCCSSCEEEEECTTSSEEEEEETTT
T ss_pred Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEecc-CCCCCcccEEEeCCCCEEEEEeCCC
Confidence 211 11122 234457789999 6665556556788999999877653333211 1122234699999994466676777
Q ss_pred CeEEEEEcCC--cE---EEEecCC---c---------ccCcCEEEEEE---------cCCCCEEEEEeCCcEEE
Q psy8448 303 NTVVIMNMQG--QI---VRSLSSG---K---------REGGDFLCCTT---------SPRGEWIYCVGEDMVLV 350 (482)
Q Consensus 303 ~~i~i~d~~~--~~---~~~~~~~---~---------~~~~~v~~~~~---------~~~g~~l~~~~~dg~i~ 350 (482)
+.|..++.++ .. ...+... . ........+++ .++|.+.++-..++.|+
T Consensus 295 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~ 368 (433)
T 4hw6_A 295 HCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVR 368 (433)
T ss_dssp TEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEE
T ss_pred CEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEE
Confidence 8999988742 11 1111111 0 01123567888 67776666666677777
No 287
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.35 E-value=4.8e-05 Score=74.25 Aligned_cols=193 Identities=18% Similarity=0.208 Sum_probs=120.4
Q ss_pred EEEEcCCCCEEEEEeC--------------------C----CeEEEEecCCCceeeccccccccc--cccccccEEEEEE
Q psy8448 105 CARFSPDGQYLITGSV--------------------D----GFIEVWNFTTGKIRKDLKYQAQDN--FMLMEEAVMSLAY 158 (482)
Q Consensus 105 ~~~~s~~~~~l~s~~~--------------------d----g~v~iwd~~~~~~~~~~~~~~~~~--~~~h~~~i~~l~~ 158 (482)
.++++|+..+++.+.. | +.|..+|..+|+..-.++...... +.....++. +..
T Consensus 250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~ 328 (582)
T 1flg_A 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY 328 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence 4677787777776653 2 589999999999877655432111 001112332 222
Q ss_pred c-CCCC---EEEEEeCCCcEEEEEcCCCeEeEEeecccC------------CCe--------------------------
Q psy8448 159 S-RDSE---MLASGSQSGKVKIWKIATGQCLRKLEKAHS------------LGV-------------------------- 196 (482)
Q Consensus 159 ~-~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------------~~v-------------------------- 196 (482)
. .+|+ .++.++.+|.++++|..+++.+..+..... .++
T Consensus 329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~ 408 (582)
T 1flg_A 329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPF 408 (582)
T ss_dssp ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCT
T ss_pred ecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCC
Confidence 2 4663 788899999999999999998876632210 000
Q ss_pred ------EEEEEccCCCEEEEEE---------------------------------CCCeEEEEeCCCCceEEEeeccccc
Q psy8448 197 ------TCIQFSRDNSQILTAS---------------------------------FDTYVRIHGLKSGKMLKEFRGHSSF 237 (482)
Q Consensus 197 ------~~i~~~~~~~~l~~~~---------------------------------~dg~i~i~d~~~~~~~~~~~~~~~~ 237 (482)
..++++|+...+++.. .+|.|..||+.+++.+.+..... +
T Consensus 409 ~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~ 487 (582)
T 1flg_A 409 LGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-P 487 (582)
T ss_dssp TCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-C
T ss_pred ccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-C
Confidence 1346666555555432 25789999999999887766332 2
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeC
Q psy8448 238 VNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK 301 (482)
Q Consensus 238 i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~ 301 (482)
+..-.....+.+++.++.||.++.||.++++.+..++.... ..-.-+.+..+|..++++.+.
T Consensus 488 ~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g--~~a~P~~y~~~G~qYv~~~~G 549 (582)
T 1flg_A 488 LWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSG--IVSPPITWEQDGEQYLGVTVG 549 (582)
T ss_dssp CCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC--CCSCCEEEEETTEEEEEEEEC
T ss_pred CcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCC--cccCceEEEECCEEEEEEEcc
Confidence 22211222467788899999999999999999988874221 111225555666444444433
No 288
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.35 E-value=3.6e-06 Score=84.06 Aligned_cols=216 Identities=10% Similarity=0.007 Sum_probs=125.6
Q ss_pred CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe-CCCcEEEEEcCC----CeEeEEeecccCCC
Q psy8448 121 DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS-QSGKVKIWKIAT----GQCLRKLEKAHSLG 195 (482)
Q Consensus 121 dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~-~dg~i~iwd~~~----~~~~~~~~~~~~~~ 195 (482)
.+.|+..++...+....+.. -..+..++|.+.+..|+.+. ..+.|+.+++.. ......+ ......
T Consensus 385 ~~~I~~id~~~~~~~~~~~~---------~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i-~~~~~~ 454 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN---------LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SRDIQA 454 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC---------CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBC-CSCC--
T ss_pred ccceEEEeCCCCcceeeecc---------CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEE-eCCCCC
Confidence 35688888776654433221 13467889998776666664 557899999875 2211111 111223
Q ss_pred eEEEEEccCCCEE-EEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeC--CCcEEEEECCCCceeee
Q psy8448 196 VTCIQFSRDNSQI-LTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASS--DGTVKMWNLKTTECTST 272 (482)
Q Consensus 196 v~~i~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~ 272 (482)
...+++.+.+..| ++-...+.|.++++........+.........|+++|.+.+|+.+.. .+.|..+++.... ...
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~ 533 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYS 533 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCE
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeE
Confidence 4567887644444 44455678999998755443333333345688999997665655443 2678888775432 222
Q ss_pred eeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448 273 FKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLV 350 (482)
Q Consensus 273 ~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~ 350 (482)
+.. ..-...+.|+++|++..++++-+..+.|..+++.+.....+............+++..+ .++++....+.|.
T Consensus 534 l~~--~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~ 608 (699)
T 1n7d_A 534 LVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIF 608 (699)
T ss_dssp ESC--SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEE
T ss_pred EEe--CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEE
Confidence 211 12234578999998767888877888999999976554444432111222344555443 3333444556777
No 289
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.31 E-value=0.00084 Score=59.99 Aligned_cols=206 Identities=11% Similarity=0.074 Sum_probs=126.5
Q ss_pred CcEEEEEEcCCC-CEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEE-EEEeCCCcEEEEE
Q psy8448 101 SHVECARFSPDG-QYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEML-ASGSQSGKVKIWK 178 (482)
Q Consensus 101 ~~v~~~~~s~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l-~~~~~dg~i~iwd 178 (482)
..+..++|++.+ .++.+-...+.|..+++..+.....+.... -.....+++.+.+..| ++-...+.|.+++
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~-------l~~p~glavd~~~g~ly~~d~~~~~I~~~~ 107 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG-------LLSPDGLACDWLGEKLYWTDSETNRIEVSN 107 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEEC-------CSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCC-------CCCccEEEEEcCCCeEEEEECCCCEEEEEE
Confidence 356789999854 444555567889999987653211111110 1346688888754444 4445667899999
Q ss_pred cCCCeEeEEeecccCCCeEEEEEccCCCEEEEEEC--CCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEe-C
Q psy8448 179 IATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF--DTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSAS-S 255 (482)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~ 255 (482)
+..... ..+..........+++.|.+..|+.+.. .+.|...++............-.....|++++++..|+.+. .
T Consensus 108 ~dG~~~-~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~ 186 (318)
T 3sov_A 108 LDGSLR-KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAK 186 (318)
T ss_dssp TTSCSC-EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred CCCCcE-EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECC
Confidence 865432 3332334456789999997667766653 57899988864332222222334568999999777676665 4
Q ss_pred CCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEec
Q psy8448 256 DGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLS 319 (482)
Q Consensus 256 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~ 319 (482)
.+.|..+|+.... ...+.. ........+++..+ .++.+-...+.|..++. +|+....+.
T Consensus 187 ~~~I~~~d~dG~~-~~~~~~--~~~~~P~glav~~~--~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 187 LNFIHKSNLDGTN-RQAVVK--GSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp TTEEEEEETTSCS-CEEEEC--SCCSCEEEEEEETT--EEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCEEEEEcCCCCc-eEEEec--CCCCCceEEEEeCC--EEEEEecCCCeEEEEECCCCCceEEEe
Confidence 6789999987433 222221 12233456666532 56666666788888887 565544443
No 290
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.30 E-value=0.00058 Score=60.07 Aligned_cols=164 Identities=12% Similarity=0.159 Sum_probs=110.3
Q ss_pred cEEEEEEcCCCCEEEEEe-CCCeEEEEecCCCceeeccccccccccccccccEEEEEE---cCCCCEEEEEe--------
Q psy8448 102 HVECARFSPDGQYLITGS-VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAY---SRDSEMLASGS-------- 169 (482)
Q Consensus 102 ~v~~~~~s~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~---~~~~~~l~~~~-------- 169 (482)
--.+++|++....|..++ ..++|..|+...+..... .......-..-...+..|.| .|+++++++..
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence 345788988555665555 789999999876543332 22110000000124689999 68877776543
Q ss_pred -----CCCcEEEEEcC---CCeEeEEeecc------------cCCCeEEEEEccCCCEEEEEECC-CeEEEEeCCCCceE
Q psy8448 170 -----QSGKVKIWKIA---TGQCLRKLEKA------------HSLGVTCIQFSRDNSQILTASFD-TYVRIHGLKSGKML 228 (482)
Q Consensus 170 -----~dg~i~iwd~~---~~~~~~~~~~~------------~~~~v~~i~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~ 228 (482)
.+..+..+|+. +++.+...... .......++..++|+..++++.. +.|..++.... .+
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~ 171 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TV 171 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CE
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EE
Confidence 25779999998 77766554311 11248899999999999989888 88888887544 33
Q ss_pred EEee------ccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy8448 229 KEFR------GHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTT 267 (482)
Q Consensus 229 ~~~~------~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~ 267 (482)
..+. ......+.|+++|+++.|++....|.|..+|++..
T Consensus 172 ~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 172 STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 3221 11223679999999999998877999999998853
No 291
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.28 E-value=0.0026 Score=62.49 Aligned_cols=222 Identities=8% Similarity=-0.034 Sum_probs=138.8
Q ss_pred EEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCeEeEEeeccc
Q psy8448 114 YLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS-QSGKVKIWKIATGQCLRKLEKAH 192 (482)
Q Consensus 114 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~ 192 (482)
+|+.+ ..+.|+..++.+......+.... -..+..++|++.+..|+.+. .++.|..+++........+ ...
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~-------~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~-~~g 78 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTG-------VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVV-EFG 78 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCS-------CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSS
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCC-------CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEE-eCC
Confidence 45444 35679999998655433332221 24588999999766666554 6788999998655433333 222
Q ss_pred CCCeEEEEEccCCCEEEEE-ECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeC--CCcEEEEECCCCce
Q psy8448 193 SLGVTCIQFSRDNSQILTA-SFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASS--DGTVKMWNLKTTEC 269 (482)
Q Consensus 193 ~~~v~~i~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--dg~i~i~d~~~~~~ 269 (482)
......+++.+.+..|+.+ ...+.|.+.++........+...-.....|+++|....|+.... .+.|...++.....
T Consensus 79 ~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~ 158 (628)
T 4a0p_A 79 LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER 158 (628)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred CCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce
Confidence 2456788998765555544 45678999998654432223234456789999996666666653 56788888875443
Q ss_pred eeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEe-CCcE
Q psy8448 270 TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVG-EDMV 348 (482)
Q Consensus 270 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~-~dg~ 348 (482)
.... ..-.....+++.+++..++++-...+.|..++++|.....+... ......+++.. + .|+... ..+.
T Consensus 159 ~~l~----~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~---l~~P~glav~~-~-~ly~tD~~~~~ 229 (628)
T 4a0p_A 159 TTLV----PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADD---LPHPFGLTQYQ-D-YIYWTDWSRRS 229 (628)
T ss_dssp EEEE----CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC---CSCEEEEEEET-T-EEEEEETTTTE
T ss_pred EEEE----CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeecc---CCCceEEEEEC-C-EEEEecCCCCE
Confidence 3222 22345689999998756777777788999999965433333322 23345777764 3 455444 4677
Q ss_pred EEEEe
Q psy8448 349 LVVRL 353 (482)
Q Consensus 349 i~iw~ 353 (482)
|...+
T Consensus 230 I~~~d 234 (628)
T 4a0p_A 230 IERAN 234 (628)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 76444
No 292
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.28 E-value=0.00082 Score=61.11 Aligned_cols=231 Identities=12% Similarity=0.110 Sum_probs=122.5
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCC---CCEEEEEeC-C-----
Q psy8448 101 SHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRD---SEMLASGSQ-S----- 171 (482)
Q Consensus 101 ~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~---~~~l~~~~~-d----- 171 (482)
.....++|.|+|+++++ ..+|.|++++ +++........ ...........|+++|+ +..|+++.. .
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~---v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~ 104 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELS---VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLR 104 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECC---CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecce---EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCc
Confidence 35679999999986655 5569999998 44321111111 11111356899999998 555555443 2
Q ss_pred CcEEEEEcCCCe-----EeEE-ee--cccCCCeEEEEEccCCCEEEEEEC-------------CCeEEEEeCCCC-----
Q psy8448 172 GKVKIWKIATGQ-----CLRK-LE--KAHSLGVTCIQFSRDNSQILTASF-------------DTYVRIHGLKSG----- 225 (482)
Q Consensus 172 g~i~iwd~~~~~-----~~~~-~~--~~~~~~v~~i~~~~~~~~l~~~~~-------------dg~i~i~d~~~~----- 225 (482)
+.|..++...+. .+.. +. .........++|.|+|.+.++.+. .|.|.-++....
T Consensus 105 ~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~n 184 (352)
T 2ism_A 105 NQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGN 184 (352)
T ss_dssp EEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTC
T ss_pred cEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCC
Confidence 578888876432 1111 21 011112468999999965555432 256777776430
Q ss_pred -------ceEEEe-eccccceeEEEEcC-CCCEEEEEeCCCcE------EEEECCCCce---------------eeeeec
Q psy8448 226 -------KMLKEF-RGHSSFVNDITFTA-DGHSVLSASSDGTV------KMWNLKTTEC---------------TSTFKS 275 (482)
Q Consensus 226 -------~~~~~~-~~~~~~i~~l~~~~-~~~~l~~~~~dg~i------~i~d~~~~~~---------------~~~~~~ 275 (482)
.....+ .++ .....++|+| ++.++++-.....+ .+.-+..+.. ......
T Consensus 185 pf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~ 263 (352)
T 2ism_A 185 PFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYF 263 (352)
T ss_dssp TTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred cccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEe
Confidence 011111 123 2357899999 66655543332321 1222222220 000000
Q ss_pred cCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC--CcE-----EEEecCCcccCcCEEEEEEcCCCCEEEEEe
Q psy8448 276 LGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ--GQI-----VRSLSSGKREGGDFLCCTTSPRGEWIYCVG 344 (482)
Q Consensus 276 ~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~--~~~-----~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~ 344 (482)
. ........++| .++ .++++....+.|...+++ +.. ...+.. ....+..+++.|||.+.++..
T Consensus 264 ~-~~~~ap~G~~~-~~G-~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~---~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 264 W-PQGFPPGNLAF-FRG-DLYVAGLRGQALLRLVLEGERGRWRVLRVETALS---GFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp C-TTCCCEEEEEE-ETT-EEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE---SSCCEEEEEECTTSCEEEEEC
T ss_pred c-CCCCCCcceEE-ECC-EEEEEECCCCEEEEEEECCCCcceeecchheecc---cCCCeeEEEECCCCcEEEEEe
Confidence 0 11223456777 344 566666667788887773 221 122221 145789999999998776654
No 293
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.21 E-value=0.00075 Score=59.92 Aligned_cols=184 Identities=11% Similarity=0.226 Sum_probs=118.3
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccC----CC---EEEEEEC---CCeEEEEeCC--CCceE
Q psy8448 161 DSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRD----NS---QILTASF---DTYVRIHGLK--SGKML 228 (482)
Q Consensus 161 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~----~~---~l~~~~~---dg~i~i~d~~--~~~~~ 228 (482)
...+++.....+-+.+||+ +++.+..+. ...+..+..-|+ |+ ++++... ++.|.+|++. ++ .+
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~---~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l 113 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYN---TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TL 113 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEEC---CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEcc---CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-ce
Confidence 3456666677889999999 888888773 245666666552 32 2333333 4789999763 33 34
Q ss_pred EEeec------cc-cceeEEEE--cCC-CC-EEEEEeCCCcEEEEECC-------CCceeeeeeccCCCccceeEEEEcC
Q psy8448 229 KEFRG------HS-SFVNDITF--TAD-GH-SVLSASSDGTVKMWNLK-------TTECTSTFKSLGASDIAVNSIHLLP 290 (482)
Q Consensus 229 ~~~~~------~~-~~i~~l~~--~~~-~~-~l~~~~~dg~i~i~d~~-------~~~~~~~~~~~~~~~~~v~~i~~~~ 290 (482)
..+.. .. ..+..+|+ +|. +. ++++...+|.+..|++. +.+.++++. ....+..+...+
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~----lgsq~EgcvvDd 189 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK----MNSQTEGMAADD 189 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE----CSSCEEEEEEET
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec----CCCCcceEEEcC
Confidence 44421 11 45677887 774 43 67888889999999883 234556664 234677888888
Q ss_pred CCCCEEEEEeCCCeEEEEEcC------CcEEEEecCCcccCcCEEEEEE--cCCCC-EEEEEe-CCcEEEEEeeh
Q psy8448 291 KNTEHFVVCNKTNTVVIMNMQ------GQIVRSLSSGKREGGDFLCCTT--SPRGE-WIYCVG-EDMVLVVRLIQ 355 (482)
Q Consensus 291 ~~~~~l~~~~~d~~i~i~d~~------~~~~~~~~~~~~~~~~v~~~~~--~~~g~-~l~~~~-~dg~i~iw~~~ 355 (482)
.. ..|+++-.+..|..++.+ ++.+..+.... -...+..+++ .++++ +|++++ .++...+|+.+
T Consensus 190 ~~-g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~-l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 190 EY-GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRH-LTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp TT-TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSS-BCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred CC-CeEEEecccceEEEEeCCcCCCCCceEEEEecCCc-cccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 77 788888888777777753 23444443221 1346777877 56666 677766 56688877653
No 294
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.20 E-value=0.00086 Score=59.56 Aligned_cols=195 Identities=13% Similarity=0.198 Sum_probs=123.2
Q ss_pred CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCC----CCE--EEEE-e-C--CCcEEEEEcC
Q psy8448 111 DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRD----SEM--LASG-S-Q--SGKVKIWKIA 180 (482)
Q Consensus 111 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~----~~~--l~~~-~-~--dg~i~iwd~~ 180 (482)
...+++.....+-+.+||+ +|+.+..+.. ..++.+..-|+ ++. ++.+ . . +++|.+|++.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~----------g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iD 107 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT----------GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAID 107 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC----------SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEEC
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC----------CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEEC
Confidence 3455666667788999999 7887776642 24555555552 222 3333 3 3 5789999773
Q ss_pred --CCeEeEEeec---c--cC-CCeEEEEE--ccC-CC-EEEEEECCCeEEEEeCC-------CCceEEEeeccccceeEE
Q psy8448 181 --TGQCLRKLEK---A--HS-LGVTCIQF--SRD-NS-QILTASFDTYVRIHGLK-------SGKMLKEFRGHSSFVNDI 241 (482)
Q Consensus 181 --~~~~~~~~~~---~--~~-~~v~~i~~--~~~-~~-~l~~~~~dg~i~i~d~~-------~~~~~~~~~~~~~~i~~l 241 (482)
++. +..+.. . .. ..+..+++ +|. +. ++++...+|.+..|++. +.+.++++.. .+.+..+
T Consensus 108 p~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~Egc 185 (355)
T 3amr_A 108 GKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGM 185 (355)
T ss_dssp TTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEE
T ss_pred CCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceE
Confidence 333 444311 1 11 44566777 664 43 68888889999999883 2345666663 4578899
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECC-----CCceeeeeeccCCCccceeEEEE--cCCCCCEEEEEe-CCCeEEEEEcC--
Q psy8448 242 TFTADGHSVLSASSDGTVKMWNLK-----TTECTSTFKSLGASDIAVNSIHL--LPKNTEHFVVCN-KTNTVVIMNMQ-- 311 (482)
Q Consensus 242 ~~~~~~~~l~~~~~dg~i~i~d~~-----~~~~~~~~~~~~~~~~~v~~i~~--~~~~~~~l~~~~-~d~~i~i~d~~-- 311 (482)
..++....|+.+-.+.-|..|+.+ +++.+..+. .......+..|++ .+++..++++++ .++++.+||..
T Consensus 186 vvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~-~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~ 264 (355)
T 3amr_A 186 AADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD-GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGK 264 (355)
T ss_dssp EEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS-SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred EEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEec-CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCC
Confidence 999988999999998777777755 233443332 1122346788887 455533555555 67799999994
Q ss_pred CcEEEEec
Q psy8448 312 GQIVRSLS 319 (482)
Q Consensus 312 ~~~~~~~~ 319 (482)
.+.+..+.
T Consensus 265 ~~~vg~f~ 272 (355)
T 3amr_A 265 NKYVADFR 272 (355)
T ss_dssp CCEEEEEE
T ss_pred CcEEEEEE
Confidence 45566664
No 295
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.19 E-value=9.4e-05 Score=65.03 Aligned_cols=162 Identities=8% Similarity=0.094 Sum_probs=111.6
Q ss_pred CCCeEEEEEccCCCEEEEEE-CCCeEEEEeCCCCceEEEeecc-------ccceeEEEE---cCCCCEEEEEe-------
Q psy8448 193 SLGVTCIQFSRDNSQILTAS-FDTYVRIHGLKSGKMLKEFRGH-------SSFVNDITF---TADGHSVLSAS------- 254 (482)
Q Consensus 193 ~~~v~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~-------~~~i~~l~~---~~~~~~l~~~~------- 254 (482)
...-.+++|++....+..++ ..+.|..||...+......... ...+..|.| .|+++++++..
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 33456789988666666666 7899999999765443332211 114679999 68877777544
Q ss_pred ------CCCcEEEEECC---CCceeeeeeccCC----------CccceeEEEEcCCCCCEEEEEeCC-CeEEEEEcCCcE
Q psy8448 255 ------SDGTVKMWNLK---TTECTSTFKSLGA----------SDIAVNSIHLLPKNTEHFVVCNKT-NTVVIMNMQGQI 314 (482)
Q Consensus 255 ------~dg~i~i~d~~---~~~~~~~~~~~~~----------~~~~v~~i~~~~~~~~~l~~~~~d-~~i~i~d~~~~~ 314 (482)
.+..|..||+. +++.+........ .......++..++| +.+++++.. +.|...+.+|+.
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~~~~~I~rV~pdG~~ 170 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFALGMPAIARVSADGKT 170 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEESSCEEEEECTTSCC
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCC-CEEEeCCCCCCeEEEEeCCCCE
Confidence 25779999999 7776554431100 12357899999999 888888888 898888887775
Q ss_pred EEEecCCc---ccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448 315 VRSLSSGK---REGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ 355 (482)
Q Consensus 315 ~~~~~~~~---~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~ 355 (482)
+..+.... ......+.++++|+|+.|++....|.+..+|+.
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 54432111 112235689999999999988779999977765
No 296
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.16 E-value=0.001 Score=65.37 Aligned_cols=219 Identities=9% Similarity=0.016 Sum_probs=125.7
Q ss_pred CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCeEeEEeecccCCCeEEE
Q psy8448 121 DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS-QSGKVKIWKIATGQCLRKLEKAHSLGVTCI 199 (482)
Q Consensus 121 dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i 199 (482)
...|+..++........+.... -..+..++|++.+..|+.+. ..+.|..+++........+..........+
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~-------~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~Gl 89 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGG-------LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 89 (619)
T ss_dssp SSBEEEECCC---------CBC-------CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEE
T ss_pred cccEEEEeCCCCcceEEEEEcC-------CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeE
Confidence 4668888887543111111111 24578999999777676665 467888898865532222222333568899
Q ss_pred EEccCCCEEEEE-ECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeC--CCcEEEEECCCCceeeeeecc
Q psy8448 200 QFSRDNSQILTA-SFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASS--DGTVKMWNLKTTECTSTFKSL 276 (482)
Q Consensus 200 ~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~ 276 (482)
++.+.+..|+.+ ...+.|.+.++........+...-.....|+++|.+..|+.+.. .+.|...++..........
T Consensus 90 AvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~-- 167 (619)
T 3s94_A 90 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN-- 167 (619)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC--
T ss_pred EEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEe--
Confidence 999866555554 55689999998654433333334456789999997666666653 4677777776433222221
Q ss_pred CCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEE-eCCcEEEEEe
Q psy8448 277 GASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCV-GEDMVLVVRL 353 (482)
Q Consensus 277 ~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~-~~dg~i~iw~ 353 (482)
..-...+.+++.+++..++++-...+.|..++++|.....+.... ......+++..+ .|+.. ...+.|...+
T Consensus 168 -~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~--~ly~td~~~~~V~~~d 240 (619)
T 3s94_A 168 -SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED--ILYWTDWSTHSILACN 240 (619)
T ss_dssp -SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS--EEEEECTTTCSEEEEE
T ss_pred -CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC--EEEEecCCCCEEEEEE
Confidence 223456889999987566677667788999999876555543311 112245666554 44443 3455555433
No 297
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.13 E-value=0.0036 Score=63.03 Aligned_cols=207 Identities=10% Similarity=0.016 Sum_probs=125.5
Q ss_pred CCcEEEEEEcCCCCE-EEEEeCCCeEEEEecCCCce----eeccccccccccccccccEEEEEEcCCCCEEEEE-eCCCc
Q psy8448 100 KSHVECARFSPDGQY-LITGSVDGFIEVWNFTTGKI----RKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASG-SQSGK 173 (482)
Q Consensus 100 ~~~v~~~~~s~~~~~-l~s~~~dg~v~iwd~~~~~~----~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~-~~dg~ 173 (482)
...+..|+|++.... +++-...+.|+.+++..... ...+... -.....|++.+.+..|+.+ ...+.
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~--------l~~P~GLAvD~~~~~LY~tD~~~~~ 494 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD--------IQAPDGLAVDWIHSNIYWTDSVLGT 494 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS--------CSCCCEEEEETTTTEEEEEETTTTE
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecC--------CCCcceeeeeecCCcEEEEecCCCe
Confidence 456788999985444 45555667888888865321 1111101 2356788898866555554 46789
Q ss_pred EEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECC--CeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEE
Q psy8448 174 VKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFD--TYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVL 251 (482)
Q Consensus 174 i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~ 251 (482)
|.+.++..... ..+..........|++.|.+.+|+.+... +.|...++........+...-.....|++++.+..|+
T Consensus 495 I~v~~ldG~~~-~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LY 573 (791)
T 3m0c_C 495 VSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLY 573 (791)
T ss_dssp EEEEETTSSSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEE
T ss_pred EEEEeCCCCeE-EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEE
Confidence 99999875443 33323344568899999976677666532 6899999865444333333345688999998777777
Q ss_pred EEe-CCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEe
Q psy8448 252 SAS-SDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSL 318 (482)
Q Consensus 252 ~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~ 318 (482)
.+. ..+.|..+++........+.. ...-.....|++..+ .++++-...+.|...+. +|+.+..+
T Consensus 574 waD~~~~~I~~~d~dG~~~~~v~~~-~~~l~~P~glav~~~--~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 574 WVDSKLHSISSIDVNGGNRKTILED-EKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp EEETTTTEEEEEETTSCSCEEEEEC-TTTTSSEEEEEEETT--EEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEeCCCCcEEEEecCCCceEEEecC-CCccCCCCEEEEeCC--EEEEEECCCCEEEEEeCCCCcceEEe
Confidence 665 456799999865443333221 011122345665432 56666666788888875 55544444
No 298
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.13 E-value=0.002 Score=60.66 Aligned_cols=158 Identities=12% Similarity=0.080 Sum_probs=99.7
Q ss_pred cEEEEEEcC-CCCEEEEEe-CCCcEEEEEcCCCeEeEEeecc--cCCCeEEEEE-------ccCCCEEEEEECCC-----
Q psy8448 152 AVMSLAYSR-DSEMLASGS-QSGKVKIWKIATGQCLRKLEKA--HSLGVTCIQF-------SRDNSQILTASFDT----- 215 (482)
Q Consensus 152 ~i~~l~~~~-~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~i~~-------~~~~~~l~~~~~dg----- 215 (482)
....|+|.| +...|+.+. ..+.|++.|+.++......... .......++| ++++.+|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 467899998 344455554 4467999998877766544221 1235889999 99999777776554
Q ss_pred --eEEEEeCCC-CceE-----EEeeccccceeEEEEcCC-CCEEEEEeCCCcEEEEECC-------CCce----------
Q psy8448 216 --YVRIHGLKS-GKML-----KEFRGHSSFVNDITFTAD-GHSVLSASSDGTVKMWNLK-------TTEC---------- 269 (482)
Q Consensus 216 --~i~i~d~~~-~~~~-----~~~~~~~~~i~~l~~~~~-~~~l~~~~~dg~i~i~d~~-------~~~~---------- 269 (482)
.|.+++... ++.. ..+.. ......++++|+ +.++++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 366776443 2221 22222 224567889995 4555556677889999987 5543
Q ss_pred -eeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC
Q psy8448 270 -TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ 311 (482)
Q Consensus 270 -~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~ 311 (482)
...+... ........++|+|++..++++-+....|+.++.+
T Consensus 299 ~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 299 TFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp TEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 1121111 2234457899999994356666777899997764
No 299
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.13 E-value=0.0046 Score=56.09 Aligned_cols=230 Identities=13% Similarity=0.110 Sum_probs=124.9
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCc-eeeccccccccccccccccEEEEEEcCC---CCEEEEEeC----C-
Q psy8448 101 SHVECARFSPDGQYLITGSVDGFIEVWNFTTGK-IRKDLKYQAQDNFMLMEEAVMSLAYSRD---SEMLASGSQ----S- 171 (482)
Q Consensus 101 ~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~h~~~i~~l~~~~~---~~~l~~~~~----d- 171 (482)
.....++|.|+|+++++ ..+|.|++++ .+++ ....+. ...........|+++|+ +..|.++.. +
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~-----v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~ 101 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFD-----VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGG 101 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECC-----CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGG
T ss_pred CCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccc-----eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCC
Confidence 45789999999985555 5569999997 3444 111111 01111356889999997 455555443 2
Q ss_pred ---CcEEEEEcCCC-------eEe-EEeecccCCCeEEEEEccCCCEEEEEEC-------------CCeEEEEeCCCC--
Q psy8448 172 ---GKVKIWKIATG-------QCL-RKLEKAHSLGVTCIQFSRDNSQILTASF-------------DTYVRIHGLKSG-- 225 (482)
Q Consensus 172 ---g~i~iwd~~~~-------~~~-~~~~~~~~~~v~~i~~~~~~~~l~~~~~-------------dg~i~i~d~~~~-- 225 (482)
..|..|+.... +.+ ..+..........++|.|+|.++++.+. .|.|.-++....
T Consensus 102 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p 181 (354)
T 3a9g_A 102 HIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPP 181 (354)
T ss_dssp CEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCC
T ss_pred CcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCC
Confidence 56777876544 111 1121111112467999999976665432 256666665432
Q ss_pred ------c-eEEEeeccccceeEEEEcC-CCCEEEEEeCCC---cEEEEECCCCce---------------eeeeeccCCC
Q psy8448 226 ------K-MLKEFRGHSSFVNDITFTA-DGHSVLSASSDG---TVKMWNLKTTEC---------------TSTFKSLGAS 279 (482)
Q Consensus 226 ------~-~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg---~i~i~d~~~~~~---------------~~~~~~~~~~ 279 (482)
. .+. -.++. ....++|+| +++++++-.... .|.+.. .+.. ..........
T Consensus 182 ~~npf~~~~i~-a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~ 257 (354)
T 3a9g_A 182 ADNPFPNSPIW-SYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSE 257 (354)
T ss_dssp TTSSSTTCCEE-EECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTC
T ss_pred CCCCCCCCcEE-EEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCC
Confidence 0 111 12333 356899999 666444432221 133332 2210 0011001011
Q ss_pred ccceeEEEEc-------CCCCCEEEEEeCCCeEEEEEcCC--cEE--EEecCCcccCcCEEEEEEcCCCCEEEEEe
Q psy8448 280 DIAVNSIHLL-------PKNTEHFVVCNKTNTVVIMNMQG--QIV--RSLSSGKREGGDFLCCTTSPRGEWIYCVG 344 (482)
Q Consensus 280 ~~~v~~i~~~-------~~~~~~l~~~~~d~~i~i~d~~~--~~~--~~~~~~~~~~~~v~~~~~~~~g~~l~~~~ 344 (482)
......+++. .++ .++++....+.|...++.+ ... ..+... ....+..+++.|||.+.++..
T Consensus 258 ~~ap~G~~~y~g~~fp~~~G-~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~--~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 258 TWAPSGASFVHGDMFPGLRG-WLLIACLRGSMLAAVNFGDNMEVRKISTFFKN--VFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCCEEEEEECCSSSCGGGTT-EEEEEETTTTEEEEEEECGGGCEEEEEEECTT--TSCCEEEEEECTTSCEEEEEC
T ss_pred CcCCcceEEECCCCCcccCC-cEEEEEcCCCEEEEEEECCCCcccceeeeccC--CCCCeeEEEECCCCcEEEEEe
Confidence 2346777873 344 6666666777888888853 332 233221 145789999999997666654
No 300
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=98.10 E-value=0.0011 Score=59.69 Aligned_cols=212 Identities=16% Similarity=0.205 Sum_probs=119.5
Q ss_pred cEEEEEEcCCCCEEEEEe------------CCCeEEEEecCCCc-eeeccccccccccccccccEEEEEEcC--CCC-EE
Q psy8448 102 HVECARFSPDGQYLITGS------------VDGFIEVWNFTTGK-IRKDLKYQAQDNFMLMEEAVMSLAYSR--DSE-ML 165 (482)
Q Consensus 102 ~v~~~~~s~~~~~l~s~~------------~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~h~~~i~~l~~~~--~~~-~l 165 (482)
....+...|+|..+++++ .+|.|.++|.++.. ....+..... .+....-....+.+.+ ++. +|
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~-~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGN-TLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECS-SCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCC-CCCcCceeeeeeEEEECCCCcEEE
Confidence 455667788876555542 68999999987432 1122222110 0111123566777765 343 45
Q ss_pred EEEe-C--CCcEEEEEcCCCe----EeEEeecccCCCeEEEEEccCCCEEEEEE-----------------CCCeEEEEe
Q psy8448 166 ASGS-Q--SGKVKIWKIATGQ----CLRKLEKAHSLGVTCIQFSRDNSQILTAS-----------------FDTYVRIHG 221 (482)
Q Consensus 166 ~~~~-~--dg~i~iwd~~~~~----~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-----------------~dg~i~i~d 221 (482)
+++. . +..|.+|++.... .+..+....-...+.+++.++|.+.++.. ..|.|..+|
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 5553 2 4678888775432 22333222234578999999998666653 125666666
Q ss_pred CCCCceEEEeeccccceeEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeeeeeccCCCccceeEEEEcC-CCCCEEEEE
Q psy8448 222 LKSGKMLKEFRGHSSFVNDITFTADGHSVLSAS-SDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLP-KNTEHFVVC 299 (482)
Q Consensus 222 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~~l~~~ 299 (482)
. ++. ..+...-...+.++|+||++.|+.+. ..+.|..|++.....+...+.. ......-.+++.+ +| .+.+++
T Consensus 210 ~--~~~-~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G-~lwva~ 284 (355)
T 3sre_A 210 P--NDV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTG-DLWVGC 284 (355)
T ss_dssp T--TCC-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTC-CEEEEE
T ss_pred C--CeE-EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCC-cEEEEe
Confidence 5 332 22332344578999999998887765 4688999998642212111111 1234567888888 47 666655
Q ss_pred eCC-CeEEEEEcC---CcEEEEec
Q psy8448 300 NKT-NTVVIMNMQ---GQIVRSLS 319 (482)
Q Consensus 300 ~~d-~~i~i~d~~---~~~~~~~~ 319 (482)
..+ +.|..|+.. +..+..+.
T Consensus 285 ~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 285 HPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp ESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred cCCceEEEEECCCCCCCCEEEEEE
Confidence 533 344445543 44555544
No 301
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.92 E-value=0.0022 Score=56.87 Aligned_cols=218 Identities=12% Similarity=0.086 Sum_probs=111.5
Q ss_pred CCCEEEEEe-CC-----CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC-----CcEEEEEc
Q psy8448 111 DGQYLITGS-VD-----GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS-----GKVKIWKI 179 (482)
Q Consensus 111 ~~~~l~s~~-~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d-----g~i~iwd~ 179 (482)
++.+++.|+ .+ ..+.+||+.+++-........ . ......+. .++..++.|+.+ ..+.+||+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~----r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~ 85 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITR--K----RRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDY 85 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSS--C----CBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEET
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCCh--h----hccccEEE--ECCEEEEEcCCCCCccCceEEEEEC
Confidence 445666666 22 368999988776443222111 0 11122222 256677777754 46899998
Q ss_pred CCCe---EeEEeeccc-CCCeEEEEEccCCCEEEEEECC-----CeEEEEeCCCCceEE--EeeccccceeEEEEcCCCC
Q psy8448 180 ATGQ---CLRKLEKAH-SLGVTCIQFSRDNSQILTASFD-----TYVRIHGLKSGKMLK--EFRGHSSFVNDITFTADGH 248 (482)
Q Consensus 180 ~~~~---~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~--~~~~~~~~i~~l~~~~~~~ 248 (482)
.+++ ....-.... ......+.+ ++..++.|+.+ ..+.+||+.+.+-.. .+......-.++.+ +++
T Consensus 86 ~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~ 161 (301)
T 2vpj_A 86 TADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGV 161 (301)
T ss_dssp TCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTE
T ss_pred CCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCE
Confidence 8765 322211111 112222222 56666776643 368899988765322 22211111122222 566
Q ss_pred EEEEEeCC-----CcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC-----CeEEEEEcCCcEEEEe
Q psy8448 249 SVLSASSD-----GTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT-----NTVVIMNMQGQIVRSL 318 (482)
Q Consensus 249 ~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~ 318 (482)
.++.|+.+ ..+.+||+.+.+-... ............+.+ ++ .+++.|+.+ ..+.+||........+
T Consensus 162 iyv~GG~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 237 (301)
T 2vpj_A 162 IYCLGGYDGLNILNSVEKYDPHTGHWTNV-TPMATKRSGAGVALL--ND-HIYVVGGFDGTAHLSSVEAYNIRTDSWTTV 237 (301)
T ss_dssp EEEECCBCSSCBCCCEEEEETTTTEEEEE-CCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred EEEECCCCCCcccceEEEEeCCCCcEEeC-CCCCcccccceEEEE--CC-EEEEEeCCCCCcccceEEEEeCCCCcEEEC
Confidence 67776654 4589999988654332 111111111122222 33 677777653 4689999965555555
Q ss_pred cCCcccCcCEEEEEEcCCCCEEEEEeCC
Q psy8448 319 SSGKREGGDFLCCTTSPRGEWIYCVGED 346 (482)
Q Consensus 319 ~~~~~~~~~v~~~~~~~~g~~l~~~~~d 346 (482)
............+.+ +++.++.|+.+
T Consensus 238 ~~~p~~r~~~~~~~~--~~~i~v~GG~~ 263 (301)
T 2vpj_A 238 TSMTTPRCYVGATVL--RGRLYAIAGYD 263 (301)
T ss_dssp CCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred CCCCCcccceeEEEE--CCEEEEEcCcC
Confidence 433221222233333 56677777765
No 302
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.87 E-value=0.013 Score=53.20 Aligned_cols=100 Identities=12% Similarity=0.185 Sum_probs=62.3
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEe--EEee--cccCCCeEEEEEccC---CCEEEEEECC------CeEE
Q psy8448 152 AVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCL--RKLE--KAHSLGVTCIQFSRD---NSQILTASFD------TYVR 218 (482)
Q Consensus 152 ~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~--~~~~~~v~~i~~~~~---~~~l~~~~~d------g~i~ 218 (482)
....++|.|+|+ |+++..+|.|.+++ +++.. ..+. .........++++|+ +..|.++... +.|.
T Consensus 32 ~P~~ia~~pdG~-l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGG-MLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSC-EEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCe-EEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 467999999998 45556679999998 44321 1111 112456889999998 5566555432 6788
Q ss_pred EEeCCCCc-----eE-EEee---ccccceeEEEEcCCCCEEEEEe
Q psy8448 219 IHGLKSGK-----ML-KEFR---GHSSFVNDITFTADGHSVLSAS 254 (482)
Q Consensus 219 i~d~~~~~-----~~-~~~~---~~~~~i~~l~~~~~~~~l~~~~ 254 (482)
.++...+. .+ ..+. ........++|.|+|.+.++.+
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 88876432 11 1122 1112346899999997666543
No 303
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.87 E-value=0.011 Score=51.49 Aligned_cols=228 Identities=10% Similarity=0.142 Sum_probs=143.6
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-eE
Q psy8448 106 ARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATG-QC 184 (482)
Q Consensus 106 ~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~-~~ 184 (482)
.-.+|..+.+|.-. ..++.|+|+++.+.++..... +.|.--.|-.+. .|+..+. ..|+-|++... .+
T Consensus 72 AIMnP~~~ViALra-g~~LQiFnletK~klks~~~~---------e~VvfWkWis~~-~L~lVT~-taVyHWs~~~~s~P 139 (365)
T 2xzh_A 72 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---------DDVTFWKWISLN-TVALVTD-NAVYHWSMEGESQP 139 (365)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS---------SCEEEEEECSSS-EEEEEES-SEEEEEESSTTCCC
T ss_pred eeeCCCccEEEEec-CCeEEEechHHhhhhcceecC---------CccEEEEecCCC-eEEEEcC-CcEEEEcccCCCCC
Confidence 34588888888765 678999999998887776654 578888887554 4555554 48999999754 34
Q ss_pred eEEeecc---cCCCeEEEEEccCCCEEEEEEC-------CCeEEEEeCCCCceEEEeeccccceeEEEEcC--CC-CEEE
Q psy8448 185 LRKLEKA---HSLGVTCIQFSRDNSQILTASF-------DTYVRIHGLKSGKMLKEFRGHSSFVNDITFTA--DG-HSVL 251 (482)
Q Consensus 185 ~~~~~~~---~~~~v~~i~~~~~~~~l~~~~~-------dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~--~~-~~l~ 251 (482)
...+... ....|..-..+++.++++..+- .|.+.+|..+.+ .-+.+.+|-..-..+.... .. ..++
T Consensus 140 ~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~ 218 (365)
T 2xzh_A 140 VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFC 218 (365)
T ss_dssp EEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEE
T ss_pred ceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeeeeeeEEEecCCCCCCceEEE
Confidence 4444321 1334666677888888765432 368899997654 4556677755443333221 11 1233
Q ss_pred EEeC---CCcEEEEECCCC---ce------eeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEe
Q psy8448 252 SASS---DGTVKMWNLKTT---EC------TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSL 318 (482)
Q Consensus 252 ~~~~---dg~i~i~d~~~~---~~------~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~ 318 (482)
.+.. .+.+++.++... .. +..+........-..++..++.. .+++.-+.-|.+++||+ ++..+..-
T Consensus 219 fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~ky-gviyviTK~G~ihlyDleTgt~i~~n 297 (365)
T 2xzh_A 219 FAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTCIYMN 297 (365)
T ss_dssp EEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTT-TEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccC-CEEEEEeCCcEEEEEEcccCcEEEEe
Confidence 2222 258999998543 11 11111111223334467777776 78999999999999999 67777665
Q ss_pred cCCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448 319 SSGKREGGDFLCCTTSPRGEWIYCVGEDMVLV 350 (482)
Q Consensus 319 ~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~ 350 (482)
.-. ...|...+.+.+..-++.....|.+.
T Consensus 298 rIS---~d~iF~ta~~~~~~Gi~~Vnr~GqVl 326 (365)
T 2xzh_A 298 RIS---GETIFVTAPHEATAGIIGVNRKGQVL 326 (365)
T ss_dssp ECC---SSCEEEEEEEGGGTEEEEEETTCEEE
T ss_pred ccC---CCceEEecccCCCCcEEEEcCCCEEE
Confidence 544 45565555555555666667888777
No 304
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.86 E-value=0.012 Score=61.90 Aligned_cols=215 Identities=11% Similarity=0.124 Sum_probs=127.6
Q ss_pred eEEEEecCCCceeeccccccccccccccccEEEEEEc---C-CCCEEEEEe----------CCCcEEEEEcCCCeEeEEe
Q psy8448 123 FIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYS---R-DSEMLASGS----------QSGKVKIWKIATGQCLRKL 188 (482)
Q Consensus 123 ~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~---~-~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~ 188 (482)
.|++.|..+.+.+..+.... .+.+.+++.. . ...+|++|+ ..|.|.+|++..++.....
T Consensus 808 ~i~lidp~t~~~i~~~~l~~-------nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~ 880 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQ-------NEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVA 880 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCT-------TEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEE
T ss_pred EEEEEeCCCCeEEEEEeCCC-------CcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEE
Confidence 35666666666555444443 2445555543 2 246888886 3478999999765544444
Q ss_pred ecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEEC--CC
Q psy8448 189 EKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNL--KT 266 (482)
Q Consensus 189 ~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~--~~ 266 (482)
.....+++++++-- +| +|++|- ...|++|++...+.+..-..+-..|..+.....++++++|..-..|.++.. ..
T Consensus 881 ~~~v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~ 957 (1158)
T 3ei3_A 881 EKEVKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPME 957 (1158)
T ss_dssp EEEESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTT
T ss_pred EEEcCCcCEEEeee-CC-EEEEEc-CCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCC
Confidence 34557788887744 44 566555 678999999876544411111112333333345788999988777766554 33
Q ss_pred CceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCC--------cEEEEecCCcccCcCEEEEE---EcC
Q psy8448 267 TECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQG--------QIVRSLSSGKREGGDFLCCT---TSP 335 (482)
Q Consensus 267 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~--------~~~~~~~~~~~~~~~v~~~~---~~~ 335 (482)
.+....-+. .....++++.+..+ ..++.+..+|.+.+..... +.+......+. ...++++. +.+
T Consensus 958 ~~L~~~a~D--~~~~~vta~~~ld~--~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhl-G~~vt~~~~~sl~~ 1032 (1158)
T 3ei3_A 958 GNFEEIARD--FNPNWMSAVEILDD--DNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHL-GEFVNVFCHGSLVM 1032 (1158)
T ss_dssp TEEEEEEEC--CSCBCEEEEEEEET--TEEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEEC-SSCEEEEEECCSCC
T ss_pred CeEEEEEee--cccccEEEEEEEcc--CcEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeC-CCcEeeEEeeeeec
Confidence 333322222 44667888888765 4788899999999987632 22332222111 34566654 333
Q ss_pred C---------CCEEEEEeCCcEEEEE
Q psy8448 336 R---------GEWIYCVGEDMVLVVR 352 (482)
Q Consensus 336 ~---------g~~l~~~~~dg~i~iw 352 (482)
. ...++.++.+|.|.+.
T Consensus 1033 ~~~~~~~~~~~~~il~~T~~GsIg~l 1058 (1158)
T 3ei3_A 1033 QNLGETSTPTQGSVLFGTVNGMIGLV 1058 (1158)
T ss_dssp C-------CEEEEEEEEETTSCEEEE
T ss_pred CCCccccccccceEEEEecCCEEEEE
Confidence 2 2357788899998865
No 305
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.86 E-value=9.5e-05 Score=73.86 Aligned_cols=208 Identities=11% Similarity=0.022 Sum_probs=119.7
Q ss_pred CcEEEEEEcCCCCEEEEE-eCCCeEEEEecCC----CceeeccccccccccccccccEEEEEEcCCC-CEEEEEeCCCcE
Q psy8448 101 SHVECARFSPDGQYLITG-SVDGFIEVWNFTT----GKIRKDLKYQAQDNFMLMEEAVMSLAYSRDS-EMLASGSQSGKV 174 (482)
Q Consensus 101 ~~v~~~~~s~~~~~l~s~-~~dg~v~iwd~~~----~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~-~~l~~~~~dg~i 174 (482)
..+..++|++.+..|+.+ ...+.|+.+++.. ......+... -.....|++.+.+ +++++-...+.|
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~--------~~~P~glavD~~~g~LY~tD~~~~~I 477 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD--------IQAPDGLAVDWIHSNIYWTDSVLGTV 477 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSC--------C--CCCEECCCSSSBCEECCTTTSCE
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCC--------CCCcceEEEEeeCCcEEEEeccCCeE
Confidence 346688999866666555 3567899998875 1111111100 1234567887644 444444566889
Q ss_pred EEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEEC--CCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEE
Q psy8448 175 KIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF--DTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLS 252 (482)
Q Consensus 175 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~ 252 (482)
.++++........+ .........+++.|.+.+|+.+.. .+.|..+++........+...-.....|+|+|++..|+.
T Consensus 478 ~v~d~dg~~~~~l~-~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~ 556 (699)
T 1n7d_A 478 SVADTKGVKRKTLF-REQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYW 556 (699)
T ss_dssp EEEBSSSCCEEEEC-CCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEE
T ss_pred EEEecCCCceEEEE-eCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEE
Confidence 99998655433333 223345678899986665655543 267888877543222222222345678999987655555
Q ss_pred E-eCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecC
Q psy8448 253 A-SSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSS 320 (482)
Q Consensus 253 ~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~ 320 (482)
+ +..+.|..+++.... ...+............|++..+ .++++....+.|..++. +++.+..+..
T Consensus 557 aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 557 VDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp EETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred EecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCCceEEeec
Confidence 4 456789999987533 2222211111122334555443 56666667788999987 5666665543
No 306
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.78 E-value=0.0063 Score=54.01 Aligned_cols=217 Identities=8% Similarity=0.045 Sum_probs=112.2
Q ss_pred CCEEEEEeC--CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC----CcEEEEEcCCCeEe
Q psy8448 112 GQYLITGSV--DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS----GKVKIWKIATGQCL 185 (482)
Q Consensus 112 ~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~ 185 (482)
+.+++.|+. ...+.+||..+++-...-..... ......+.+ ++..++.|+.+ ..+.+||+.+++..
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~------r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~ 83 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEK------RRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWY 83 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCC------CBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEE
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcc------cceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEE
Confidence 335556654 35799999988765433221111 112222222 56677777754 57889999887643
Q ss_pred EEeeccc-CCCeEEEEEccCCCEEEEEECC------CeEEEEeCCCCceEEE--eeccccceeEEEEcCCCCEEEEEeC-
Q psy8448 186 RKLEKAH-SLGVTCIQFSRDNSQILTASFD------TYVRIHGLKSGKMLKE--FRGHSSFVNDITFTADGHSVLSASS- 255 (482)
Q Consensus 186 ~~~~~~~-~~~v~~i~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~--~~~~~~~i~~l~~~~~~~~l~~~~~- 255 (482)
..-.... ......+.+ ++..++.|+.+ ..+.+||+.+.+-... +......- +++. -+++.++.|+.
T Consensus 84 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~ 159 (306)
T 3ii7_A 84 SKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSH-GMVE-ANGLIYVCGGSL 159 (306)
T ss_dssp EEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEECCEE
T ss_pred ECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCccee-EEEE-ECCEEEEECCCC
Confidence 3321111 111222222 66677777755 4689999987653222 11111111 2222 25666666653
Q ss_pred --------CCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC-----CeEEEEEcCCcEEEEecCCc
Q psy8448 256 --------DGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT-----NTVVIMNMQGQIVRSLSSGK 322 (482)
Q Consensus 256 --------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~ 322 (482)
-..+.+||+.+.+-... ......... .++... ++ .+++.|+.+ ..+.+||........+....
T Consensus 160 ~~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~-~~~~~~-~~-~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p 235 (306)
T 3ii7_A 160 GNNVSGRVLNSCEVYDPATETWTEL-CPMIEARKN-HGLVFV-KD-KIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMP 235 (306)
T ss_dssp SCTTTCEECCCEEEEETTTTEEEEE-CCCSSCCBS-CEEEEE-TT-EEEEECCEETTEEBCCEEEEETTTTEEEECCCCS
T ss_pred CCCCcccccceEEEeCCCCCeEEEC-CCccchhhc-ceEEEE-CC-EEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCC
Confidence 34588999988753322 111111111 222222 33 677776543 46889999665555554332
Q ss_pred ccCcCEEEEEEcCCCCEEEEEeCC
Q psy8448 323 REGGDFLCCTTSPRGEWIYCVGED 346 (482)
Q Consensus 323 ~~~~~v~~~~~~~~g~~l~~~~~d 346 (482)
........+.+ +++.++.|+.+
T Consensus 236 ~~r~~~~~~~~--~~~i~v~GG~~ 257 (306)
T 3ii7_A 236 WKGVTVKCAAV--GSIVYVLAGFQ 257 (306)
T ss_dssp CCBSCCEEEEE--TTEEEEEECBC
T ss_pred CCccceeEEEE--CCEEEEEeCcC
Confidence 22222333334 56777788754
No 307
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.78 E-value=0.021 Score=51.81 Aligned_cols=243 Identities=12% Similarity=0.091 Sum_probs=124.2
Q ss_pred CcEEEEEEcCCCC-EEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCC---CCEEEEEe-C-----
Q psy8448 101 SHVECARFSPDGQ-YLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRD---SEMLASGS-Q----- 170 (482)
Q Consensus 101 ~~v~~~~~s~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~---~~~l~~~~-~----- 170 (482)
.....|+|.|+|+ +++ +...|.|++++.. +.....+.... ............++++|+ +..|..+. .
T Consensus 18 ~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~~~~~~~-~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g 94 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSAPLSGVP-DVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG 94 (353)
T ss_dssp SSEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECCCCBSCC-CCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred CCcEEEEEcCCCCEEEE-EeCCceEEEEeCC-CceeeEecCCc-ccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence 3568999999998 555 4567999999853 33221111000 011112346789999995 44555443 2
Q ss_pred --CCcEEEEEcCCC----eEeEEeecc------cCCCeEEEEEccCCCEEEEEEC-------------CCeEEEEeCCCC
Q psy8448 171 --SGKVKIWKIATG----QCLRKLEKA------HSLGVTCIQFSRDNSQILTASF-------------DTYVRIHGLKSG 225 (482)
Q Consensus 171 --dg~i~iwd~~~~----~~~~~~~~~------~~~~v~~i~~~~~~~~l~~~~~-------------dg~i~i~d~~~~ 225 (482)
...|..+++... .....+... .......++|.|+|.+.++.+. .|.|.-++....
T Consensus 95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~ 174 (353)
T 2g8s_A 95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE 174 (353)
T ss_dssp CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence 235666666432 111111111 0112357999999955555432 246777776532
Q ss_pred c------------eEEEe-eccccceeEEEEcC-CCCEEEEEeCC--CcEEEEECCCCcee-------------------
Q psy8448 226 K------------MLKEF-RGHSSFVNDITFTA-DGHSVLSASSD--GTVKMWNLKTTECT------------------- 270 (482)
Q Consensus 226 ~------------~~~~~-~~~~~~i~~l~~~~-~~~~l~~~~~d--g~i~i~d~~~~~~~------------------- 270 (482)
- ....+ .++ .....++|+| +++ |.++... +.=.|.-+..+...
T Consensus 175 ~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~-l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~ 252 (353)
T 2g8s_A 175 IPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNA-LWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEA 252 (353)
T ss_dssp CCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTE-EEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTC
T ss_pred CCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCC-EEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcc
Confidence 0 11111 223 3367899999 555 4444332 11122222221110
Q ss_pred ---------eeeeccCCCccceeEEEEcC-------CCCCEEEEEeCCCeEEEEEcC-CcEEEEecCCcccCcCEEEEEE
Q psy8448 271 ---------STFKSLGASDIAVNSIHLLP-------KNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSGKREGGDFLCCTT 333 (482)
Q Consensus 271 ---------~~~~~~~~~~~~v~~i~~~~-------~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~v~~~~~ 333 (482)
...... .+......++|.. ++ .++++....+.|...+++ ++..............+..+++
T Consensus 253 ~~~~~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g-~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~ 330 (353)
T 2g8s_A 253 KGEIVAGTEQPVFYW-KDSPAVSGMAFYNSDKFPQWQQ-KLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRT 330 (353)
T ss_dssp CBSSCTTSCCCSEEE-SSCCCEEEEEEECCSSSGGGTT-EEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEE
T ss_pred cCCCCCCccCCeEEe-CCCcCcceeEEECCccCcccCC-cEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEE
Confidence 000000 1123456677753 23 566666677888888874 3332221111111357899999
Q ss_pred cCCCCEEEEEe-CCcEEE
Q psy8448 334 SPRGEWIYCVG-EDMVLV 350 (482)
Q Consensus 334 ~~~g~~l~~~~-~dg~i~ 350 (482)
.|||.+.++.. .+|.|+
T Consensus 331 ~pdG~lyv~td~~~g~I~ 348 (353)
T 2g8s_A 331 GPDGYLYVLTDESSGELL 348 (353)
T ss_dssp CTTSCEEEEECSTTEEEE
T ss_pred CCCCcEEEEEeCCCCEEE
Confidence 99998666433 455544
No 308
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.76 E-value=0.022 Score=51.56 Aligned_cols=145 Identities=12% Similarity=0.135 Sum_probs=82.3
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe-EeEEee--cccCCCeEEEEEccC---CCEEEEEEC----C----Ce
Q psy8448 151 EAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ-CLRKLE--KAHSLGVTCIQFSRD---NSQILTASF----D----TY 216 (482)
Q Consensus 151 ~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~--~~~~~~v~~i~~~~~---~~~l~~~~~----d----g~ 216 (482)
.....|+|.|+|+ |+++..+|.|++++ .+++ .+..+. .........|+++|+ +..|.++.. + +.
T Consensus 29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 3578999999997 55556679999997 4554 222110 112356889999997 556655543 2 57
Q ss_pred EEEEeCCCC--c-----eE-EEeec-cccceeEEEEcCCCCEEEEEeC-------------CCcEEEEECCCCc------
Q psy8448 217 VRIHGLKSG--K-----ML-KEFRG-HSSFVNDITFTADGHSVLSASS-------------DGTVKMWNLKTTE------ 268 (482)
Q Consensus 217 i~i~d~~~~--~-----~~-~~~~~-~~~~i~~l~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~------ 268 (482)
|..++.... . .+ ..+.. .......|+|.|||.++++.+. .|.|..++....-
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf 186 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF 186 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence 888887654 1 11 11221 1123467999999986666432 2456656554210
Q ss_pred -eeeeeeccCCCccceeEEEEcCCCCCEEEEEe
Q psy8448 269 -CTSTFKSLGASDIAVNSIHLLPKNTEHFVVCN 300 (482)
Q Consensus 269 -~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~ 300 (482)
....+.. ++. ....++|+|+...++++-.
T Consensus 187 ~~~~i~a~--G~r-np~Gla~d~~~g~l~v~d~ 216 (354)
T 3a9g_A 187 PNSPIWSY--GHR-NPQGIDWHRASGVMVATEH 216 (354)
T ss_dssp TTCCEEEE--CCS-CCCEEEECTTTCCEEEEEC
T ss_pred CCCcEEEE--ccC-CcceEEEeCCCCCEEEEec
Confidence 0011110 222 3467999994436665543
No 309
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.75 E-value=0.032 Score=54.79 Aligned_cols=184 Identities=8% Similarity=0.019 Sum_probs=118.3
Q ss_pred EEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEE-ECCCeEEEEeCCCCceEEEeeccccceeEEE
Q psy8448 164 MLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTA-SFDTYVRIHGLKSGKMLKEFRGHSSFVNDIT 242 (482)
Q Consensus 164 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~ 242 (482)
+|+.+ ....|+..++.+......+....-..+..++|++.+..|+.+ ..++.|..+++........+......+..++
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA 86 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA 86 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence 44444 456899999986654333322233468899999976666655 4568899999876544333333334578899
Q ss_pred EcCCCCEEEEE-eCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEe-CCCeEEEEEcCCcEEEEecC
Q psy8448 243 FTADGHSVLSA-SSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCN-KTNTVVIMNMQGQIVRSLSS 320 (482)
Q Consensus 243 ~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~ 320 (482)
+++.+..|+.+ ...+.|.+.++........+. ..-.....+++.|..+.++++-. ..+.|...+++|.....+..
T Consensus 87 vD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~---~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~ 163 (628)
T 4a0p_A 87 VDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVW---KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP 163 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSTTCEEEEC---SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred EEeCCCEEEEEECCCCEEEEEecCCCcEEEEEe---CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC
Confidence 98766656554 456789999987543222221 22234589999997645555542 35788888887765555443
Q ss_pred CcccCcCEEEEEEcCCCCEEEEEe-CCcEEEEEee
Q psy8448 321 GKREGGDFLCCTTSPRGEWIYCVG-EDMVLVVRLI 354 (482)
Q Consensus 321 ~~~~~~~v~~~~~~~~g~~l~~~~-~dg~i~iw~~ 354 (482)
. ......++++++++.|+.+. ..+.|...++
T Consensus 164 ~---~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~ 195 (628)
T 4a0p_A 164 N---VGRANGLTIDYAKRRLYWTDLDTNLIESSNM 195 (628)
T ss_dssp S---CSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred C---CCCcceEEEccccCEEEEEECCCCEEEEEcC
Confidence 2 45678999999877777665 4567774443
No 310
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.73 E-value=0.013 Score=57.63 Aligned_cols=202 Identities=11% Similarity=0.047 Sum_probs=120.1
Q ss_pred CCcEEEEEEcCCCCEEEEE-eCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEE-eCCCcEEEE
Q psy8448 100 KSHVECARFSPDGQYLITG-SVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASG-SQSGKVKIW 177 (482)
Q Consensus 100 ~~~v~~~~~s~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~-~~dg~i~iw 177 (482)
-..+..++|++.+..|..+ ...+.|..++++.......+.... -.....+++.+.+..|+.+ ...+.|.+.
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~-------~~~P~GlAvD~~~~~ly~~d~~~~~I~v~ 111 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG-------LLSPDGLACDWLGEKLYWTDSETNRIEVS 111 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSS-------CSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCC-------CCCcCeEEEEecCCEEEEEeCCCCEEEEE
Confidence 4457899999966666544 456789889887543211111110 1468899999865555554 467899999
Q ss_pred EcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEEC--CCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEe-
Q psy8448 178 KIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF--DTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSAS- 254 (482)
Q Consensus 178 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~- 254 (482)
++.... ...+....-.....|++.|.+..|+.+.. .+.|...++............-.....|++++++..|+.+.
T Consensus 112 ~~dG~~-~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~ 190 (619)
T 3s94_A 112 NLDGSL-RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA 190 (619)
T ss_dssp ETTSCS-CEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEET
T ss_pred ECCCCC-EEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeC
Confidence 986543 33332334455778999997666666653 36787778754333322323345678999999777666664
Q ss_pred CCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcE
Q psy8448 255 SDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQI 314 (482)
Q Consensus 255 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~ 314 (482)
..+.|..+|+..... ..+.. ........+++..+ .++++-...+.|...|. +++.
T Consensus 191 ~~~~I~~~~~dG~~~-~~~~~--~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 191 KLNFIHKSNLDGTNR-QAVVK--GSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp TTCCEEEESSSCCEE-C-----------CCCEEESSS--EEEEECTTTCSEEEEESSSCCC
T ss_pred CCCeEEEecCCCCcc-EEEEe--CCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcc
Confidence 467799999875432 22211 11122246666554 45556556778888887 4543
No 311
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.70 E-value=0.0049 Score=54.58 Aligned_cols=218 Identities=14% Similarity=0.144 Sum_probs=109.4
Q ss_pred CCEEEEEeCC----CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCC
Q psy8448 112 GQYLITGSVD----GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS-----GKVKIWKIATG 182 (482)
Q Consensus 112 ~~~l~s~~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 182 (482)
+.+++.|+.+ ..+.+||+.+.+-...-..+. . ...-..+.+ ++..++.|+.+ ..+.+||..+.
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~--~----r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~ 87 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPS--R----RCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKD 87 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSS--C----CBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTT
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCc--c----cccceEEEE--CCEEEEEeCcCCCccccceEEECCCCC
Confidence 3455556533 458889988776433211111 1 111112222 56677777754 35889998877
Q ss_pred eEeEEeecccC-CCeEEEEEccCCCEEEEEECCC-----eEEEEeCCCCceEEE--eeccccceeEEEEcCCCCEEEEEe
Q psy8448 183 QCLRKLEKAHS-LGVTCIQFSRDNSQILTASFDT-----YVRIHGLKSGKMLKE--FRGHSSFVNDITFTADGHSVLSAS 254 (482)
Q Consensus 183 ~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~--~~~~~~~i~~l~~~~~~~~l~~~~ 254 (482)
+....-..... .....+.+ ++..++.|+.++ .+.+||+.+.+-... +....... +++. -+++.++.|+
T Consensus 88 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG 163 (302)
T 2xn4_A 88 QWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSV-GVGV-VGGLLYAVGG 163 (302)
T ss_dssp EEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEECC
T ss_pred ceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCc-eEEE-ECCEEEEEeC
Confidence 64332211111 11222222 567777777553 588899877653322 11111111 2222 2566666665
Q ss_pred C-------CCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC-----CeEEEEEcCCcEEEEecCCc
Q psy8448 255 S-------DGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT-----NTVVIMNMQGQIVRSLSSGK 322 (482)
Q Consensus 255 ~-------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~ 322 (482)
. ...+.+||+.+.+-... .......... ++... ++ .+++.|+.+ ..+.+||........+....
T Consensus 164 ~~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~-~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~ 239 (302)
T 2xn4_A 164 YDVASRQCLSTVECYNATTNEWTYI-AEMSTRRSGA-GVGVL-NN-LLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMN 239 (302)
T ss_dssp EETTTTEECCCEEEEETTTTEEEEE-CCCSSCCBSC-EEEEE-TT-EEEEECCBSSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred CCCCCCccccEEEEEeCCCCcEEEC-CCCccccccc-cEEEE-CC-EEEEECCCCCCcccceEEEEeCCCCCEeeCCCCC
Confidence 3 24588999987654332 1111111111 22222 33 677777654 46889999655555554332
Q ss_pred ccCcCEEEEEEcCCCCEEEEEeCCc
Q psy8448 323 REGGDFLCCTTSPRGEWIYCVGEDM 347 (482)
Q Consensus 323 ~~~~~v~~~~~~~~g~~l~~~~~dg 347 (482)
........+.+ +++.++.|+.++
T Consensus 240 ~~r~~~~~~~~--~~~i~v~GG~~~ 262 (302)
T 2xn4_A 240 MCRRNAGVCAV--NGLLYVVGGDDG 262 (302)
T ss_dssp SCCBSCEEEEE--TTEEEEECCBCS
T ss_pred CccccCeEEEE--CCEEEEECCcCC
Confidence 11222222333 566777777654
No 312
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.69 E-value=0.03 Score=51.00 Aligned_cols=232 Identities=10% Similarity=0.137 Sum_probs=147.4
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-e
Q psy8448 105 CARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATG-Q 183 (482)
Q Consensus 105 ~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~-~ 183 (482)
+.-.+|..+.+|.=. ..++.|+|+++...+...... +.|.--.|-.+. .|+..+ +..|+-|++... .
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~---------e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~ 137 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---------DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQ 137 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS---------SCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCC
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC---------CCceEEEecCCC-eEEEEc-CCeeEEecccCCCC
Confidence 344788888887765 678999999998877766654 457677776544 465555 448999999754 3
Q ss_pred EeEEeecc---cCCCeEEEEEccCCCEEEEEE-------CCCeEEEEeCCCCceEEEeeccccceeEEEEcCCC---CEE
Q psy8448 184 CLRKLEKA---HSLGVTCIQFSRDNSQILTAS-------FDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADG---HSV 250 (482)
Q Consensus 184 ~~~~~~~~---~~~~v~~i~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~---~~l 250 (482)
+...+... ....|..-..+++.++++..+ -.|.+.+|..+.+ .-+.+.+|-..-..+....+. ..+
T Consensus 138 P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf 216 (494)
T 1bpo_A 138 PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLF 216 (494)
T ss_dssp CEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEE
T ss_pred chhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEE
Confidence 44444321 134466667788888877543 2468899998654 345667776554444432211 233
Q ss_pred EEEeC---CCcEEEEECCCC---c------eeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEE
Q psy8448 251 LSASS---DGTVKMWNLKTT---E------CTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRS 317 (482)
Q Consensus 251 ~~~~~---dg~i~i~d~~~~---~------~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~ 317 (482)
+.+.. .+.++|.++... . .+..+........-..++..++.. .+++.-+.-|.+++||+ ++..+..
T Consensus 217 ~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~ky-gviyviTK~G~i~lyDleTgt~i~~ 295 (494)
T 1bpo_A 217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTCIYM 295 (494)
T ss_dssp EEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTT-TEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccC-CEEEEEecCceEEEEecccceeeee
Confidence 33333 378999998543 1 111111111223334577888877 78999999999999999 6777766
Q ss_pred ecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448 318 LSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRL 353 (482)
Q Consensus 318 ~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~ 353 (482)
-.-. ...|...+.+....-++.....|.+.--.
T Consensus 296 nrIs---~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~ 328 (494)
T 1bpo_A 296 NRIS---GETIFVTAPHEATAGIIGVNRKGQVLSVC 328 (494)
T ss_dssp EECC---SSCEEEEEEETTTTEEEEEETTCEEEEEE
T ss_pred eccc---CCceEEecccCCCCcEEEEccCceEEEEE
Confidence 5543 55666666666666677777888877433
No 313
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.63 E-value=0.027 Score=49.13 Aligned_cols=210 Identities=10% Similarity=0.129 Sum_probs=133.8
Q ss_pred CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEE
Q psy8448 121 DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQ 200 (482)
Q Consensus 121 dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~ 200 (482)
+..|.|-|+.++....+.+.. .-+.-.+|..+.+|.-. ..++.++|+++.+.+.... ....|.-=.
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~-----------AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~~--~~e~VvfWk 113 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPIS-----------ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWK 113 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECC-----------CSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE--CSSCEEEEE
T ss_pred CCEEEEEECCCCCCccccccc-----------cceeeeCCCccEEEEec-CCeEEEechHHhhhhccee--cCCccEEEE
Confidence 347899999886654332222 22344588888777765 6789999999999888874 456787777
Q ss_pred EccCCCEEEEEECCCeEEEEeCCC-CceEEEeecc----ccceeEEEEcCCCCEEEEEeC-------CCcEEEEECCCCc
Q psy8448 201 FSRDNSQILTASFDTYVRIHGLKS-GKMLKEFRGH----SSFVNDITFTADGHSVLSASS-------DGTVKMWNLKTTE 268 (482)
Q Consensus 201 ~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~----~~~i~~l~~~~~~~~l~~~~~-------dg~i~i~d~~~~~ 268 (482)
|-.+ +.|+..+ +..|+-|++.. ..+.+.+..| ...|.....+++.++++..+- .|.+.+|..+.+.
T Consensus 114 Wis~-~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~ 191 (365)
T 2xzh_A 114 WISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV 191 (365)
T ss_dssp ECSS-SEEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE
T ss_pred ecCC-CeEEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc
Confidence 8644 4566665 67899999974 3555666544 346778888999998876542 3778999987653
Q ss_pred eeeeeeccCCCccceeEEEEcCC--CCCEEEEEeC---CCeEEEEEcC----Cc------EEEEecCCcccCcCEEEEEE
Q psy8448 269 CTSTFKSLGASDIAVNSIHLLPK--NTEHFVVCNK---TNTVVIMNMQ----GQ------IVRSLSSGKREGGDFLCCTT 333 (482)
Q Consensus 269 ~~~~~~~~~~~~~~v~~i~~~~~--~~~~l~~~~~---d~~i~i~d~~----~~------~~~~~~~~~~~~~~v~~~~~ 333 (482)
.+.+. +|......+..... ...+++.+.. .+.+++.++. +. ....+........-..++..
T Consensus 192 -sQ~ie---Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqv 267 (365)
T 2xzh_A 192 -SQPIE---GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI 267 (365)
T ss_dssp -EEEEC---CSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEE
T ss_pred -cceee---eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEe
Confidence 33343 55444333322211 1123333332 2578888872 11 12212222222344567888
Q ss_pred cCCCCEEEEEeCCcEEE
Q psy8448 334 SPRGEWIYCVGEDMVLV 350 (482)
Q Consensus 334 ~~~g~~l~~~~~dg~i~ 350 (482)
++.-..++..+.-|.++
T Consensus 268 s~kygviyviTK~G~ih 284 (365)
T 2xzh_A 268 SEKHDVVFLITKYGYIH 284 (365)
T ss_dssp ETTTTEEEEEETTSEEE
T ss_pred cccCCEEEEEeCCcEEE
Confidence 88888999999999999
No 314
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.59 E-value=0.041 Score=50.10 Aligned_cols=210 Identities=9% Similarity=0.108 Sum_probs=134.5
Q ss_pred CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEE
Q psy8448 121 DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQ 200 (482)
Q Consensus 121 dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~ 200 (482)
+..|.|-|+.++....+.+.. .-+.-.+|..+.+|.-. ..++.|+|+++...+.... ....|.-=.
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~-----------AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~--~~e~VvfWk 112 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPIS-----------ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWK 112 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECC-----------CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEE--CSSCCCEEE
T ss_pred CCeEEEEECCCCCcceecccc-----------cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhccee--cCCCceEEE
Confidence 347889999886654322222 22445788888777765 6799999999999888874 345677777
Q ss_pred EccCCCEEEEEECCCeEEEEeCCC-CceEEEeecc----ccceeEEEEcCCCCEEEEEeC-------CCcEEEEECCCCc
Q psy8448 201 FSRDNSQILTASFDTYVRIHGLKS-GKMLKEFRGH----SSFVNDITFTADGHSVLSASS-------DGTVKMWNLKTTE 268 (482)
Q Consensus 201 ~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~----~~~i~~l~~~~~~~~l~~~~~-------dg~i~i~d~~~~~ 268 (482)
|-.+ +.|+..+ +..|+-|++.. ..+.+.+..| ...|.....+++.++++..+- .|.+.+|..+.+.
T Consensus 113 Wis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~ 190 (494)
T 1bpo_A 113 WISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV 190 (494)
T ss_dssp EEET-TEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC
T ss_pred ecCC-CeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc
Confidence 7644 4566655 67899999974 3456666544 346778888999999875442 4778999988654
Q ss_pred eeeeeeccCCCccceeEEEEcCCC--CCEEEEEeC---CCeEEEEEcCC---------cEEEE-ecCCcccCcCEEEEEE
Q psy8448 269 CTSTFKSLGASDIAVNSIHLLPKN--TEHFVVCNK---TNTVVIMNMQG---------QIVRS-LSSGKREGGDFLCCTT 333 (482)
Q Consensus 269 ~~~~~~~~~~~~~~v~~i~~~~~~--~~~l~~~~~---d~~i~i~d~~~---------~~~~~-~~~~~~~~~~v~~~~~ 333 (482)
.+.+. +|......+....+. ..+++.+.. .+.+++.++.. +.... +........-..++..
T Consensus 191 -sQ~ie---Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqv 266 (494)
T 1bpo_A 191 -SQPIE---GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI 266 (494)
T ss_dssp -EEEEC---CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEE
T ss_pred -cchhe---eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEe
Confidence 23333 555444433332211 123444433 37888888821 11111 1111122344567889
Q ss_pred cCCCCEEEEEeCCcEEE
Q psy8448 334 SPRGEWIYCVGEDMVLV 350 (482)
Q Consensus 334 ~~~g~~l~~~~~dg~i~ 350 (482)
++.-..++..+.-|.++
T Consensus 267 s~kygviyviTK~G~i~ 283 (494)
T 1bpo_A 267 SEKHDVVFLITKYGYIH 283 (494)
T ss_dssp ETTTTEEEEEETTSEEE
T ss_pred cccCCEEEEEecCceEE
Confidence 99999999999999999
No 315
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.54 E-value=0.005 Score=54.75 Aligned_cols=219 Identities=10% Similarity=0.023 Sum_probs=111.2
Q ss_pred CCCEEEEEeCC----CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC----C-----CcEEEE
Q psy8448 111 DGQYLITGSVD----GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ----S-----GKVKIW 177 (482)
Q Consensus 111 ~~~~l~s~~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~----d-----g~i~iw 177 (482)
++.+++.|+.+ ..+.+||..+++-...-.... .. .....+.+ ++..++.|+. + ..+.+|
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r----~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~ 95 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQV--PR----SGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCY 95 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSS--CC----BSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCc--cc----ccceEEEE--CCEEEEECCCcCCCCCCeecceEEEE
Confidence 45667777632 368999988776543322111 11 11122222 5666777665 2 468899
Q ss_pred EcCCCeEeEEeecc-cCCCeEEEEEccCCCEEEEEECC-----CeEEEEeCCCCceEEE--eeccccceeEEEEcCCCCE
Q psy8448 178 KIATGQCLRKLEKA-HSLGVTCIQFSRDNSQILTASFD-----TYVRIHGLKSGKMLKE--FRGHSSFVNDITFTADGHS 249 (482)
Q Consensus 178 d~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~--~~~~~~~i~~l~~~~~~~~ 249 (482)
|+.+.+....-... .......+.+ +++.++.|+.+ ..+.+||+.+.+-... +......-.++.+ ++..
T Consensus 96 d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i 171 (308)
T 1zgk_A 96 NPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLL 171 (308)
T ss_dssp ETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEE
T ss_pred CCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEE
Confidence 98877543221111 1112222233 56666666543 3688899877653221 1111111122222 5666
Q ss_pred EEEEeCC-----CcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC-----CeEEEEEcCCcEEEEec
Q psy8448 250 VLSASSD-----GTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT-----NTVVIMNMQGQIVRSLS 319 (482)
Q Consensus 250 l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~ 319 (482)
++.|+.+ ..+.+||+.+.+-... ............+.+ ++ .+++.|+.+ ..+.+||+.......+.
T Consensus 172 yv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 247 (308)
T 1zgk_A 172 YAVGGFDGTNRLNSAECYYPERNEWRMI-TAMNTIRSGAGVCVL--HN-CIYAAGGYDGQDQLNSVERYDVETETWTFVA 247 (308)
T ss_dssp EEECCBCSSCBCCCEEEEETTTTEEEEC-CCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred EEEeCCCCCCcCceEEEEeCCCCeEeeC-CCCCCccccceEEEE--CC-EEEEEeCCCCCCccceEEEEeCCCCcEEECC
Confidence 6666653 4589999987654322 111111111222222 33 677777654 56899999666555554
Q ss_pred CCcccCcCEEEEEEcCCCCEEEEEeCCc
Q psy8448 320 SGKREGGDFLCCTTSPRGEWIYCVGEDM 347 (482)
Q Consensus 320 ~~~~~~~~v~~~~~~~~g~~l~~~~~dg 347 (482)
...........+.+ +++.++.|+.++
T Consensus 248 ~~p~~r~~~~~~~~--~~~i~v~GG~~~ 273 (308)
T 1zgk_A 248 PMKHRRSALGITVH--QGRIYVLGGYDG 273 (308)
T ss_dssp CCSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred CCCCCccceEEEEE--CCEEEEEcCcCC
Confidence 33221222222333 566777777543
No 316
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.48 E-value=0.071 Score=50.04 Aligned_cols=113 Identities=13% Similarity=0.130 Sum_probs=63.9
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCC---CCEEEEEeC------
Q psy8448 100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRD---SEMLASGSQ------ 170 (482)
Q Consensus 100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~---~~~l~~~~~------ 170 (482)
-.....|+|.|+|+++++-...+.|++++..+++......................|+|+|+ +..|..+..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 34567999999999777765445788888665553321111110000012467889999995 555555442
Q ss_pred -------CCcEEEEEcCCC-------eEeE-EeecccCCCeEEEEEccCCCEEEEEE
Q psy8448 171 -------SGKVKIWKIATG-------QCLR-KLEKAHSLGVTCIQFSRDNSQILTAS 212 (482)
Q Consensus 171 -------dg~i~iwd~~~~-------~~~~-~~~~~~~~~v~~i~~~~~~~~l~~~~ 212 (482)
...|.-+++..+ +.+. .+..........|+|.|+|.+.++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 134555655322 1111 12111122478999999998776654
No 317
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.43 E-value=0.058 Score=47.94 Aligned_cols=214 Identities=7% Similarity=-0.044 Sum_probs=106.7
Q ss_pred EEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC----C-------CcEEEEEcCCC
Q psy8448 114 YLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ----S-------GKVKIWKIATG 182 (482)
Q Consensus 114 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~----d-------g~i~iwd~~~~ 182 (482)
+++.|+ ..+.+||..+++-.. ...... .......+...++..++.|+. + ..+.+||..++
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p------~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~ 77 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC-ASLSSQ------VPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDS 77 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE-EECCCC------SCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTT
T ss_pred EEEEcC--CceEEECCCCCeEec-CCCCCC------CCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCC
Confidence 345555 569999998887542 111110 011222223346777788873 1 12778898877
Q ss_pred eEeEEeecccC-CCeEEEEEccCCCEEEEEECC--------CeEEEEeCCCCceEE--EeeccccceeEEEEcCCCCEEE
Q psy8448 183 QCLRKLEKAHS-LGVTCIQFSRDNSQILTASFD--------TYVRIHGLKSGKMLK--EFRGHSSFVNDITFTADGHSVL 251 (482)
Q Consensus 183 ~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~--~~~~~~~~i~~l~~~~~~~~l~ 251 (482)
+....-..... .....+.+ ++..++.|+.+ ..+.+||+.+.+-.. .+...... .+++. .+++.++
T Consensus 78 ~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv 153 (315)
T 4asc_A 78 EWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVLS-HMDLVYV 153 (315)
T ss_dssp EEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEE-ETTEEEE
T ss_pred eEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEEE-ECCEEEE
Confidence 54321111111 11122222 56666666632 368999998765322 11111111 12222 3566667
Q ss_pred EEeC-C-----CcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCC-----eEEEEEcCCcEEEEecC
Q psy8448 252 SASS-D-----GTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTN-----TVVIMNMQGQIVRSLSS 320 (482)
Q Consensus 252 ~~~~-d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~ 320 (482)
.|+. + ..+.+||..+.+-... ......... .+++.. ++ .+++.|+.++ .+.+||........+..
T Consensus 154 ~GG~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~-~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 229 (315)
T 4asc_A 154 IGGKGSDRKCLNKMCVYDPKKFEWKEL-APMQTARSL-FGATVH-DG-RIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA 229 (315)
T ss_dssp ECCBCTTSCBCCCEEEEETTTTEEEEC-CCCSSCCBS-CEEEEE-TT-EEEEEEEECSSSEEEEEEEEETTTTEEEEECC
T ss_pred EeCCCCCCcccceEEEEeCCCCeEEEC-CCCCCchhc-eEEEEE-CC-EEEEEeccCCCCccceEEEEECCCCeEEECCC
Confidence 7765 2 4689999987653322 111111111 122222 33 6777777543 57889986555555543
Q ss_pred CcccCcCEEEEEEcCCCCEEEEEeCC
Q psy8448 321 GKREGGDFLCCTTSPRGEWIYCVGED 346 (482)
Q Consensus 321 ~~~~~~~v~~~~~~~~g~~l~~~~~d 346 (482)
..........+.+ +++.++.|+.+
T Consensus 230 ~p~~r~~~~~~~~--~~~l~v~GG~~ 253 (315)
T 4asc_A 230 FPQERSSLSLVSL--VGTLYAIGGFA 253 (315)
T ss_dssp CSSCCBSCEEEEE--TTEEEEEEEEE
T ss_pred CCCcccceeEEEE--CCEEEEECCcc
Confidence 2221222233333 56777777764
No 318
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.43 E-value=0.051 Score=48.88 Aligned_cols=184 Identities=16% Similarity=0.163 Sum_probs=105.0
Q ss_pred EEEEEEcCCCCEEEEE------------eCCCcEEEEEcCCCe-EeEEee-cc-----cCCCeEEEEEcc--CCC-EEEE
Q psy8448 153 VMSLAYSRDSEMLASG------------SQSGKVKIWKIATGQ-CLRKLE-KA-----HSLGVTCIQFSR--DNS-QILT 210 (482)
Q Consensus 153 i~~l~~~~~~~~l~~~------------~~dg~i~iwd~~~~~-~~~~~~-~~-----~~~~v~~i~~~~--~~~-~l~~ 210 (482)
...+...|+|..++++ ..+|.|.++|+.+.. ....+. .+ .......+.+.+ ++. +|++
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 3444556666444443 268999999987421 112221 11 123566777766 343 4555
Q ss_pred EEC---CCeEEEEeCCCCc-e---EEEeecc-ccceeEEEEcCCCCEEEEEeC-----------------CCcEEEEECC
Q psy8448 211 ASF---DTYVRIHGLKSGK-M---LKEFRGH-SSFVNDITFTADGHSVLSASS-----------------DGTVKMWNLK 265 (482)
Q Consensus 211 ~~~---dg~i~i~d~~~~~-~---~~~~~~~-~~~i~~l~~~~~~~~l~~~~~-----------------dg~i~i~d~~ 265 (482)
+.. +..|.+|+++... . +..+.+. -...+.+.+.++|++.++... .|.|..+|.
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~- 210 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP- 210 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC-
Confidence 432 4567777765432 2 2233321 235789999999987776541 244555554
Q ss_pred CCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC--CcEE--EEecCCcccCcCEEEEEEcC-CCCEE
Q psy8448 266 TTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ--GQIV--RSLSSGKREGGDFLCCTTSP-RGEWI 340 (482)
Q Consensus 266 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~--~~~~~~~~~~~~v~~~~~~~-~g~~l 340 (482)
++..... ..-..-+.++|+|++..++++-+..+.|..|++. +... +.+. . .+..-.+++++ +|++.
T Consensus 211 -~~~~~~~----~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~---~g~PDGi~vD~e~G~lw 281 (355)
T 3sre_A 211 -NDVRVVA----EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-F---DTLVDNISVDPVTGDLW 281 (355)
T ss_dssp -TCCEEEE----EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-C---SSEEEEEEECTTTCCEE
T ss_pred -CeEEEee----cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-C---CCCCceEEEeCCCCcEE
Confidence 3322222 2223568999999996666666778999999984 3321 2221 1 34567789998 58877
Q ss_pred EEEeCC
Q psy8448 341 YCVGED 346 (482)
Q Consensus 341 ~~~~~d 346 (482)
+++..+
T Consensus 282 va~~~~ 287 (355)
T 3sre_A 282 VGCHPN 287 (355)
T ss_dssp EEEESC
T ss_pred EEecCC
Confidence 766544
No 319
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=97.42 E-value=0.087 Score=49.59 Aligned_cols=238 Identities=10% Similarity=0.082 Sum_probs=140.8
Q ss_pred EEEEeCCCeEEEEecCCCceeecccccccccccc-----------------cccc--EEEEEEcC---CCCEEEEEe-CC
Q psy8448 115 LITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFML-----------------MEEA--VMSLAYSR---DSEMLASGS-QS 171 (482)
Q Consensus 115 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-----------------h~~~--i~~l~~~~---~~~~l~~~~-~d 171 (482)
+.+|+..|.|+|+-+.+++.+..+..-......+ ..+. =..+++.. ||++|+.-. .+
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 5678889999999999988877654322111100 0011 11233332 678888877 56
Q ss_pred CcEEEEEcCCCeEeEEeecccCCCeEEEEEc--cCCCEEEEEECC-------CeE------------EEEeCCCCceEEE
Q psy8448 172 GKVKIWKIATGQCLRKLEKAHSLGVTCIQFS--RDNSQILTASFD-------TYV------------RIHGLKSGKMLKE 230 (482)
Q Consensus 172 g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~--~~~~~l~~~~~d-------g~i------------~i~d~~~~~~~~~ 230 (482)
..|...++..-++-..+..+....+..+.|- |+..+++.++.. |.. ...|..+.+....
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~Q 232 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAFQ 232 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEEE
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEEE
Confidence 7888999999888877777788889999986 678888887642 221 1123333333222
Q ss_pred eeccccceeEEEEcCCCCEEEEEeCCC---------------cEEEEECCC-------Cc--e-----eeeeeccC----
Q psy8448 231 FRGHSSFVNDITFTADGHSVLSASSDG---------------TVKMWNLKT-------TE--C-----TSTFKSLG---- 277 (482)
Q Consensus 231 ~~~~~~~i~~l~~~~~~~~l~~~~~dg---------------~i~i~d~~~-------~~--~-----~~~~~~~~---- 277 (482)
+.- .+....+...+++.+.++.+.+. .+.++++.. |+ . +..+....
T Consensus 233 v~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~ 311 (638)
T 3sbq_A 233 VIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGK 311 (638)
T ss_dssp EEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTB
T ss_pred EEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccccc
Confidence 211 22333455567777777665431 255555321 10 0 11111000
Q ss_pred --------CCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-------CcE-------EEEecCCcccCcCEEEEEEcC
Q psy8448 278 --------ASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-------GQI-------VRSLSSGKREGGDFLCCTTSP 335 (482)
Q Consensus 278 --------~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-------~~~-------~~~~~~~~~~~~~v~~~~~~~ 335 (482)
........+..+|+|..+++.+-.+.++.++|.+ ++. ...... .......+|++
T Consensus 312 ~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~----GlGPlHt~Fd~ 387 (638)
T 3sbq_A 312 DSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL----GLGPLHTTFDG 387 (638)
T ss_dssp CCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC----CSCEEEEEECS
T ss_pred CCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC----CCcccEEEECC
Confidence 1122345688999996556666678999999985 121 222222 34567899999
Q ss_pred CCCEEEEEeCCcEEEEEeehhh
Q psy8448 336 RGEWIYCVGEDMVLVVRLIQQY 357 (482)
Q Consensus 336 ~g~~l~~~~~dg~i~iw~~~~~ 357 (482)
+|.-..+---|..|.-|++...
T Consensus 388 ~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 388 RGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp SSEEEEEETTTTEEEEEEHHHH
T ss_pred CCceEeeeeecceEEEEeccHH
Confidence 9954455668999998887754
No 320
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.40 E-value=0.013 Score=53.18 Aligned_cols=146 Identities=10% Similarity=0.141 Sum_probs=96.4
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCeEeEEeeccc---CCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCc---------
Q psy8448 159 SRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAH---SLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGK--------- 226 (482)
Q Consensus 159 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--------- 226 (482)
+.+|..++.+- ++.||.-++..+...+.+...+ -..+..+..+|+|.+||..+ +..|.|..+..+.
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence 34566666653 4688888887554455553332 23688899999999999887 6688888886321
Q ss_pred ---eEEEeec------cccceeEEEEcC---CCCEEEEEeCCCcEEEEECCCCc--eeeeee------ccCCCccceeEE
Q psy8448 227 ---MLKEFRG------HSSFVNDITFTA---DGHSVLSASSDGTVKMWNLKTTE--CTSTFK------SLGASDIAVNSI 286 (482)
Q Consensus 227 ---~~~~~~~------~~~~i~~l~~~~---~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~------~~~~~~~~v~~i 286 (482)
..+.+.- ...+|..+.|+| .+..|++-..|+.|++||+.... +. .+. ........|.++
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~ 185 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDL 185 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEE
Confidence 1122221 246799999999 45789999999999999998632 11 221 111233678899
Q ss_pred EEcCCCCCEEEEEe--CCCeEEEE
Q psy8448 287 HLLPKNTEHFVVCN--KTNTVVIM 308 (482)
Q Consensus 287 ~~~~~~~~~l~~~~--~d~~i~i~ 308 (482)
+|.+++ --|.+.+ .+|.|+-.
T Consensus 186 ~Fg~~~-lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 186 EFSKDG-LTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EECTTS-SCEEEEECTTSCEEEEE
T ss_pred EEcCCC-cEEEEEecCCCCCEEEE
Confidence 999976 4455533 67777644
No 321
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.39 E-value=0.026 Score=51.27 Aligned_cols=147 Identities=12% Similarity=0.168 Sum_probs=99.5
Q ss_pred ccCCCEEEEEECCCeEEEEeCCCCceEEEeecc----ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCce--------
Q psy8448 202 SRDNSQILTASFDTYVRIHGLKSGKMLKEFRGH----SSFVNDITFTADGHSVLSASSDGTVKMWNLKTTEC-------- 269 (482)
Q Consensus 202 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------- 269 (482)
..+|..++++- ++.||.-++......+.+... -..|..+..+|+|++|+..+. ..|.|..+..+..
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccc
Confidence 34666676665 578888887755445555432 235888999999998888764 5788988873221
Q ss_pred ----eeeeecc--C-CCccceeEEEEcCCCC--CEEEEEeCCCeEEEEEcCC---cEEEEecCCc------ccCcCEEEE
Q psy8448 270 ----TSTFKSL--G-ASDIAVNSIHLLPKNT--EHFVVCNKTNTVVIMNMQG---QIVRSLSSGK------REGGDFLCC 331 (482)
Q Consensus 270 ----~~~~~~~--~-~~~~~v~~i~~~~~~~--~~l~~~~~d~~i~i~d~~~---~~~~~~~~~~------~~~~~v~~~ 331 (482)
.+.+..- . ....+|..+.|+|-+. ..+++-..|+.|++||+.. .+. .+.... .....+.++
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~ 185 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDL 185 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEE
Confidence 1122210 0 1256799999999764 4899999999999999942 222 332211 112678899
Q ss_pred EEcCCCCEEEEEe--CCcEEEE
Q psy8448 332 TTSPRGEWIYCVG--EDMVLVV 351 (482)
Q Consensus 332 ~~~~~g~~l~~~~--~dg~i~i 351 (482)
+|.+++-.|+..+ .+|.|+-
T Consensus 186 ~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 186 EFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp EECTTSSCEEEEECTTSCEEEE
T ss_pred EEcCCCcEEEEEecCCCCCEEE
Confidence 9999988888766 8899883
No 322
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.0028 Score=56.54 Aligned_cols=193 Identities=9% Similarity=0.094 Sum_probs=104.5
Q ss_pred CEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEE--cCCCCEEEEE--eCCCcEEEEEcCCCeEeEEe
Q psy8448 113 QYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAY--SRDSEMLASG--SQSGKVKIWKIATGQCLRKL 188 (482)
Q Consensus 113 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~--~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~ 188 (482)
..++.++.||.|+-.|..+|+..-.+..... .++....- .+.+..++.+ +.||.+..++..+|.....+
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~-------~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~ 83 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENF-------QPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPL 83 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGS-------CCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCcc-------CCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeee
Confidence 4678889999999999999998877655410 11111110 0122234443 58999999999888655544
Q ss_pred eccc---CCCeEE---EEE-c----cCCCEEEEEECCCeEEEEeCCCCceEEEeeccc--cc-----eeEEEEc-----C
Q psy8448 189 EKAH---SLGVTC---IQF-S----RDNSQILTASFDTYVRIHGLKSGKMLKEFRGHS--SF-----VNDITFT-----A 245 (482)
Q Consensus 189 ~~~~---~~~v~~---i~~-~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~-----i~~l~~~-----~ 245 (482)
.... ..++.. ... . ..+..+++|+.+|.+...|+++|+.+.++.... +. ..|.... .
T Consensus 84 ~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~ 163 (339)
T 2be1_A 84 SIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQE 163 (339)
T ss_dssp EHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-------------------
T ss_pred ccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccccccccc
Confidence 3221 122221 000 0 145678899999999999999999998886321 10 1111111 1
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeeeec--cCCC--cccee-EEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEE
Q psy8448 246 DGHSVLSASSDGTVKMWNLKTTECTSTFKS--LGAS--DIAVN-SIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVR 316 (482)
Q Consensus 246 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~--~~~v~-~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~ 316 (482)
.+..++.+..+..+.+.+ ++++ ...+.. .... ..++. +-....++ .+ ++++.||.|..+|. .|..+-
T Consensus 164 ~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg-~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 164 CENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDG-MC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp -CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSS-CC-EEEETTTEEEEECSTTCCEEE
T ss_pred CCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCC-cE-EEECCCCEEEEEECCCCcEEE
Confidence 235677777777777766 4453 222110 0000 00000 00001223 33 55788888888887 465543
No 323
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.32 E-value=0.023 Score=50.25 Aligned_cols=175 Identities=7% Similarity=0.010 Sum_probs=88.6
Q ss_pred CCEEEEEeC--CCcEEEEEcCCCeEeEEeecc-cCCCeEEEEEccCCCEEEEEECC----CeEEEEeCCCCceEEE--ee
Q psy8448 162 SEMLASGSQ--SGKVKIWKIATGQCLRKLEKA-HSLGVTCIQFSRDNSQILTASFD----TYVRIHGLKSGKMLKE--FR 232 (482)
Q Consensus 162 ~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~--~~ 232 (482)
+..++.|+. ...+.+||..+++....-... .......+. -++..++.|+.+ ..+.+||+.+.+-... +.
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 335556654 357899998887643221111 111222222 256677777654 5789999987753222 22
Q ss_pred ccccceeEEEEcCCCCEEEEEeCC------CcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeC-----
Q psy8448 233 GHSSFVNDITFTADGHSVLSASSD------GTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK----- 301 (482)
Q Consensus 233 ~~~~~i~~l~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~----- 301 (482)
........+.+ ++..++.|+.+ ..+.+||..+.+-... ......... .+++.. ++ .+++.|+.
T Consensus 90 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~-~~~~~~-~~-~iyv~GG~~~~~~ 163 (306)
T 3ii7_A 90 TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTK-PSMLTQRCS-HGMVEA-NG-LIYVCGGSLGNNV 163 (306)
T ss_dssp SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE-CCCSSCCBS-CEEEEE-TT-EEEEECCEESCTT
T ss_pred ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC-CCCcCCcce-eEEEEE-CC-EEEEECCCCCCCC
Confidence 11111222222 56677777654 4589999988754332 111111111 122222 33 66666653
Q ss_pred ----CCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCC
Q psy8448 302 ----TNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGED 346 (482)
Q Consensus 302 ----d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~d 346 (482)
-..+.+||........+.........-..+.+ +++.++.|+.+
T Consensus 164 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~ 210 (306)
T 3ii7_A 164 SGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQN 210 (306)
T ss_dssp TCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEE
T ss_pred cccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCC
Confidence 34588999965555555432211222222333 56666666654
No 324
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.31 E-value=0.018 Score=50.85 Aligned_cols=191 Identities=11% Similarity=0.114 Sum_probs=99.3
Q ss_pred CCCEEEEEeCC-----CeEEEEecCCCc---eeeccccccccccccccccEEEEEEcCCCCEEEEEeCC-----CcEEEE
Q psy8448 111 DGQYLITGSVD-----GFIEVWNFTTGK---IRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS-----GKVKIW 177 (482)
Q Consensus 111 ~~~~l~s~~~d-----g~v~iwd~~~~~---~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d-----g~i~iw 177 (482)
++++++.|+.+ ..+.+||+.+++ -........ . .....++.+ +++.++.|+.+ ..+.+|
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~--~----r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~ 133 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNV--R----RGLAGATTL--GDMIYVSGGFDGSRRHTSMERY 133 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSS--C----CBSCEEEEE--TTEEEEECCBCSSCBCCEEEEE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCC--C----ccceeEEEE--CCEEEEEcccCCCcccceEEEE
Confidence 56777777754 469999998876 332211111 0 111222222 56677777644 368899
Q ss_pred EcCCCeEeEEeecccC-CCeEEEEEccCCCEEEEEECC-----CeEEEEeCCCCceEEE--eeccccceeEEEEcCCCCE
Q psy8448 178 KIATGQCLRKLEKAHS-LGVTCIQFSRDNSQILTASFD-----TYVRIHGLKSGKMLKE--FRGHSSFVNDITFTADGHS 249 (482)
Q Consensus 178 d~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~--~~~~~~~i~~l~~~~~~~~ 249 (482)
|+.+.+....-..... ....++.+ ++..++.|+.+ ..+.+||+.+.+-... +........++.+ +++.
T Consensus 134 d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i 209 (301)
T 2vpj_A 134 DPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHI 209 (301)
T ss_dssp ETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEE
T ss_pred cCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEE
Confidence 9887754332211111 11222222 66677777654 4688999887653322 1111111122222 5666
Q ss_pred EEEEeCC-----CcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC-----CeEEEEEcCCcEEEE
Q psy8448 250 VLSASSD-----GTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT-----NTVVIMNMQGQIVRS 317 (482)
Q Consensus 250 l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~ 317 (482)
++.|+.+ ..+.+||+.+.+-... ............+.+ ++ .+++.|+.+ ..+.+||........
T Consensus 210 ~v~GG~~~~~~~~~v~~yd~~~~~W~~~-~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 283 (301)
T 2vpj_A 210 YVVGGFDGTAHLSSVEAYNIRTDSWTTV-TSMTTPRCYVGATVL--RG-RLYAIAGYDGNSLLSSIECYDPIIDSWEV 283 (301)
T ss_dssp EEECCBCSSSBCCCEEEEETTTTEEEEE-CCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBEEEEEEEETTTTEEEE
T ss_pred EEEeCCCCCcccceEEEEeCCCCcEEEC-CCCCCcccceeEEEE--CC-EEEEEcCcCCCcccccEEEEcCCCCeEEE
Confidence 7777653 4689999988754332 211111111222222 33 677777654 357788885444333
No 325
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.31 E-value=0.086 Score=47.19 Aligned_cols=238 Identities=11% Similarity=0.064 Sum_probs=124.9
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCC---CCEEEEE---eCCCc
Q psy8448 100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRD---SEMLASG---SQSGK 173 (482)
Q Consensus 100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~---~~~l~~~---~~dg~ 173 (482)
-.....|+|.|+|.++++--..|.|++++..+++........ ............|+++|+ +..|... ..++.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~--~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVP--GVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECT--TCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccC--ceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 456789999999998777655899999987655532111110 011122467899999995 3445443 23455
Q ss_pred EEEEEcCCC----------eEeE-EeecccCCCeEEEEEccCCCEEEEEEC-------------CCeEEEEeCCCCc---
Q psy8448 174 VKIWKIATG----------QCLR-KLEKAHSLGVTCIQFSRDNSQILTASF-------------DTYVRIHGLKSGK--- 226 (482)
Q Consensus 174 i~iwd~~~~----------~~~~-~~~~~~~~~v~~i~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~--- 226 (482)
|.-|.+..+ +.+. .+.....-....|+|.|+|.+.++.+. .|.|.-.+....-
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~ 188 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPG 188 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTT
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCC
Confidence 666665441 1111 121111113457999999987666542 3556555654220
Q ss_pred ----eEEEe-eccccceeEEEEcCCCCEEEEEe-CCCcEEEEECCCCcee---------------eeeeccCCCccceeE
Q psy8448 227 ----MLKEF-RGHSSFVNDITFTADGHSVLSAS-SDGTVKMWNLKTTECT---------------STFKSLGASDIAVNS 285 (482)
Q Consensus 227 ----~~~~~-~~~~~~i~~l~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~---------------~~~~~~~~~~~~v~~ 285 (482)
....+ .+|. ....++|+|++.+.++=. .++.=.|--+..+... ..+.....+......
T Consensus 189 nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G 267 (347)
T 3das_A 189 NPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSG 267 (347)
T ss_dssp CSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEE
T ss_pred CCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcc
Confidence 00111 2343 356899999877554422 2222222222222210 000000011124456
Q ss_pred EEEcCCCCCEEEEEeCCCeEEEEEcCCcEE----EEecCCcccCcCEEEEEEcCCCCEEEEEe
Q psy8448 286 IHLLPKNTEHFVVCNKTNTVVIMNMQGQIV----RSLSSGKREGGDFLCCTTSPRGEWIYCVG 344 (482)
Q Consensus 286 i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~~~v~~~~~~~~g~~l~~~~ 344 (482)
++|.. + .+++..-..+.|....+++... ..+... ....+..++..|||.++++-+
T Consensus 268 ~~~~~-g-~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~--~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 268 IAYAE-G-SVWMAGLRGERLWRIPLKGTAAAADPQAFLEG--EYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEEET-T-EEEEEESTTCSEEEEEEETTEESSCCEEESTT--TSSCEEEEEEEETTEEEEEEC
T ss_pred eEEEc-C-ceeeccccCCEEEEEEecCCceecceEEeecC--CCCCccEEEECCCCcEEEEEc
Confidence 66653 3 5666666666776666633211 222221 146788999999987666543
No 326
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.29 E-value=0.19 Score=50.85 Aligned_cols=231 Identities=11% Similarity=0.099 Sum_probs=135.1
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy8448 100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKI 179 (482)
Q Consensus 100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~ 179 (482)
.+.|+++.-..+|. |-.|+.+| +..||-..-+. +.... . .....|.++....++ .|..++.+| +..||.
T Consensus 21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~~~~---~~~~~--~--~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~ 89 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYSTQQ---HFTYG--E--NNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNY 89 (758)
T ss_dssp CCCEEEEEECTTSC-EEEEESSC-EEEECSSCEEE---CSCTT--S--TTSSCEEEEEEETTT-EEEEEETTE-EEEEET
T ss_pred cceEEEEEECCCCC-EEEEECCC-ccccCCCceEE---EEccC--C--CCCceEEEEEEcCCC-cEEEEeCCC-eEEEeC
Confidence 46799999988885 45566777 66777432211 11110 0 013568888877766 466666665 789998
Q ss_pred CCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEee-----ccccceeEEEEcCCCCEEEEEe
Q psy8448 180 ATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFR-----GHSSFVNDITFTADGHSVLSAS 254 (482)
Q Consensus 180 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~i~~l~~~~~~~~l~~~~ 254 (482)
.+.+..... ......|.++.. .++ .|..++.+ .|..+|..+++.. .+. .....|.++....++.+.+ ++
T Consensus 90 ~~~~f~~~~-~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt 163 (758)
T 3ott_A 90 RADRYEQPE-TDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDNQIYV-GT 163 (758)
T ss_dssp TTTEECCCS-CCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTCCEEE-EE
T ss_pred CCCEEECcc-cCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCCCEEE-Ee
Confidence 776533211 112335777654 344 67777766 6888998766543 231 1234588888888877554 55
Q ss_pred CCCcEEEEECCCCceeeeeeccC---CCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEE
Q psy8448 255 SDGTVKMWNLKTTECTSTFKSLG---ASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCC 331 (482)
Q Consensus 255 ~dg~i~i~d~~~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~ 331 (482)
.+| |..||..+++.. .+.... .....|.++...+++ ..+.+++. +-+..++.....+..+... ....|.++
T Consensus 164 ~~G-l~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~-~~lWigt~-~Gl~~~~~~~~~~~~~~~l--~~~~i~~i 237 (758)
T 3ott_A 164 YNG-LCRYIPSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTR-QCVWIGTE-GYLFQYFPSTGQIKQTEAF--HNNSIKSL 237 (758)
T ss_dssp TTE-EEEEETTTTEEE-EECCCCCTTCSSCCEEEEEEETTT-TEEEEEEE-EEEEEEETTTTEEEEEEEE--EEEEEEEE
T ss_pred CCC-HhhCccCCCceE-EecCCCccccccceeEEEEEECCC-CEEEEEEC-CCCeEEcCCCCeEEeccCC--CCCeEEEE
Confidence 554 778887766532 221110 112347788777765 44555553 4688888854444333211 13457888
Q ss_pred EEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448 332 TTSPRGEWIYCVGEDMVLVVRLIQ 355 (482)
Q Consensus 332 ~~~~~g~~l~~~~~dg~i~iw~~~ 355 (482)
...++|.+.+ |+.+| +.+++..
T Consensus 238 ~~d~~g~lWi-gT~~G-l~~~~~~ 259 (758)
T 3ott_A 238 ALDGNGDLLA-GTDNG-LYVYHND 259 (758)
T ss_dssp EECTTCCEEE-EETTE-EEEECCT
T ss_pred EEcCCCCEEE-EeCCc-eeEEecC
Confidence 8888887655 44544 5656543
No 327
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.27 E-value=0.1 Score=47.19 Aligned_cols=144 Identities=14% Similarity=0.186 Sum_probs=79.7
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEee------cccCCCeEEEEEccC---CCEEEEEEC--------
Q psy8448 151 EAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLE------KAHSLGVTCIQFSRD---NSQILTASF-------- 213 (482)
Q Consensus 151 ~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~~v~~i~~~~~---~~~l~~~~~-------- 213 (482)
.....|+|.|+|+.|+++...|.|++++. .+.....+. .........++++|+ +..|.++..
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 35789999999984555567899999985 333221110 112345789999996 555554432
Q ss_pred CCeEEEEeCCCC--c--eEEE-eec------cccceeEEEEcCCCCEEEEEeC-------------CCcEEEEECCCCc-
Q psy8448 214 DTYVRIHGLKSG--K--MLKE-FRG------HSSFVNDITFTADGHSVLSASS-------------DGTVKMWNLKTTE- 268 (482)
Q Consensus 214 dg~i~i~d~~~~--~--~~~~-~~~------~~~~i~~l~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~- 268 (482)
...|..+++... + .... +.. .......|.|.|||.+.++.+. .|.|.-++....-
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 235666766533 1 1111 111 1122467999999965555433 2457777765320
Q ss_pred -----------eeeeeeccCCCccceeEEEEcCCCCCEEEE
Q psy8448 269 -----------CTSTFKSLGASDIAVNSIHLLPKNTEHFVV 298 (482)
Q Consensus 269 -----------~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~ 298 (482)
....+.. ++ .....++|.|....++++
T Consensus 177 ~~npf~~~~~~~~~i~a~--G~-rnp~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSY--GI-RNPQGMAMNPWSNALWLN 214 (353)
T ss_dssp TTCTTTTSTTSCTTEEEE--CC-SEEEEEEEETTTTEEEEE
T ss_pred CCCCCcCCCCCCccEEEE--cC-cCccceEEECCCCCEEEE
Confidence 1111110 22 235789999943255554
No 328
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.24 E-value=0.089 Score=46.29 Aligned_cols=199 Identities=11% Similarity=0.095 Sum_probs=114.1
Q ss_pred cCCCCEEEEEe--CCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC--------------C
Q psy8448 109 SPDGQYLITGS--VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS--------------G 172 (482)
Q Consensus 109 s~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d--------------g 172 (482)
++++..+.... .++.|...+..... ...+.. .. +--+++++.+|+.+... .
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~----------~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~ 88 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSN----------DT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRN 88 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEE----------EE--EEEEEECSSEEEEEEECC------CCSSCCSE
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccC----------Cc--eeeEEEcCCEEEEEECCCCcccccceeccCCC
Confidence 45666776654 24566666654333 222221 12 33457889988888643 3
Q ss_pred cEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEE----CCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCC
Q psy8448 173 KVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTAS----FDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGH 248 (482)
Q Consensus 173 ~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~ 248 (482)
.|+..++..++.. .+. ... ...|++++++|+-.. .+..|...++.... ...+..+.. ..++++++
T Consensus 89 ~Iy~i~~dg~~~~-~l~---~~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~ 157 (302)
T 3s25_A 89 SLCRIKRNGHGST-VLD---PDP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDR 157 (302)
T ss_dssp EEEEEETTSCCCE-EEE---CSC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETT
T ss_pred eEEEEeCCCCcce-Eee---cCC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECC
Confidence 5777777665432 231 111 236778888888776 34567777776433 344443332 35677888
Q ss_pred EEEEEeC-CCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC-CeEEEEEcCCcEEEEecCCcccCc
Q psy8448 249 SVLSASS-DGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT-NTVVIMNMQGQIVRSLSSGKREGG 326 (482)
Q Consensus 249 ~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~ 326 (482)
.|+-.+. ...|...++..+.....+. + ... ..+.|++..++.+...+ ..|..-+++|.....+...
T Consensus 158 ~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~----- 225 (302)
T 3s25_A 158 YFYYNNPKNGQLYRYDTASQSEALFYD---C---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEA----- 225 (302)
T ss_dssp EEEEECTTTCCEEEEETTTTEEEEEEC---S---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCS-----
T ss_pred EEEEEeCCCceEEEEECCCCCEEEEeC---C---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCC-----
Confidence 8886665 5778888887665433332 1 112 23568884444443333 4677777777666666532
Q ss_pred CEEEEEEcCCCCEEEEEeC
Q psy8448 327 DFLCCTTSPRGEWIYCVGE 345 (482)
Q Consensus 327 ~v~~~~~~~~g~~l~~~~~ 345 (482)
.+ ..|+|++.+|+.++.
T Consensus 226 ~~--~~~~~~g~~Iy~~~~ 242 (302)
T 3s25_A 226 NI--EHYNVYGSLIFYQRG 242 (302)
T ss_dssp CE--EEEEEETTEEEEEEC
T ss_pred Cc--ceEEECCCEEEEEEC
Confidence 23 347888888886643
No 329
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.24 E-value=0.024 Score=46.42 Aligned_cols=145 Identities=8% Similarity=-0.008 Sum_probs=84.4
Q ss_pred CCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceE------EEee--ccccceeEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy8448 194 LGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKML------KEFR--GHSSFVNDITFTADGHSVLSASSDGTVKMWNLK 265 (482)
Q Consensus 194 ~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~--~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~ 265 (482)
..+..++|+|+|.+.++ .+|.++-.+..+.+.. ..+- +-. .-.++.|.|+|.+.++ .||.|.-++-.
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 36789999999886666 6888877776553221 1110 111 1478999999997777 55988877753
Q ss_pred CCceeeeeec---c-CCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-Cc------EEEEecCCcccCcCEEEEEEc
Q psy8448 266 TTECTSTFKS---L-GASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQ------IVRSLSSGKREGGDFLCCTTS 334 (482)
Q Consensus 266 ~~~~~~~~~~---~-~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~------~~~~~~~~~~~~~~v~~~~~~ 334 (482)
+.....-+.. + ...-..+..|.+.|+| .+.++. |+.++-.... +. ....+-... -...+.+.|+
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G-~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g--~~~yr~l~f~ 190 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNG-YLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGG--WDTFKFLFFS 190 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECTTS-CEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSS--GGGEEEEEEC
T ss_pred cCCCCceeccccEeccCCCCceEEEEECCCc-eEEEEe--CCcEEecCCCCCCCcccccccceeccCC--cceEEEEEEC
Confidence 3221111100 0 0122567899999998 566555 7775433321 11 011111111 2344567799
Q ss_pred CCCCEEEEEeCCcEEE
Q psy8448 335 PRGEWIYCVGEDMVLV 350 (482)
Q Consensus 335 ~~g~~l~~~~~dg~i~ 350 (482)
++|...++. +|.++
T Consensus 191 ~~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 191 SVGTLFGVQ--GGKFY 204 (236)
T ss_dssp TTSCEEEEE--TTEEE
T ss_pred CCCcEEEEe--CCeEE
Confidence 999877766 78666
No 330
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.09 E-value=0.13 Score=45.59 Aligned_cols=214 Identities=9% Similarity=0.004 Sum_probs=103.6
Q ss_pred EEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC----CC-------cEEEEEcCCC
Q psy8448 114 YLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ----SG-------KVKIWKIATG 182 (482)
Q Consensus 114 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~----dg-------~i~iwd~~~~ 182 (482)
+++.|+. .+.+||..+++-.. ....... ..........++..++.|+. ++ .+.+||..++
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~-~~~~~~~------~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~ 88 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYL-TALAEQI------PRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSS 88 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEE-EEECTTS------CSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTT
T ss_pred hhhcccc--ceEEECCCCCceec-ccCCccC------CccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCC
Confidence 4444543 48899998877543 1111100 11112223346777788873 12 1778888776
Q ss_pred eEeEEeecccC-CCeEEEEEccCCCEEEEEECC-------CeEEEEeCCCCceEEE--eeccccceeEEEEcCCCCEEEE
Q psy8448 183 QCLRKLEKAHS-LGVTCIQFSRDNSQILTASFD-------TYVRIHGLKSGKMLKE--FRGHSSFVNDITFTADGHSVLS 252 (482)
Q Consensus 183 ~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~--~~~~~~~i~~l~~~~~~~~l~~ 252 (482)
+....-..... .....+.+ ++..++.|+.+ ..+.+||+.+.+-... +...... .+++. .++..++.
T Consensus 89 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~ 164 (318)
T 2woz_A 89 EWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYG-HNVIS-HNGMIYCL 164 (318)
T ss_dssp EEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEES-CEEEE-ETTEEEEE
T ss_pred cEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccc-cEEEE-ECCEEEEE
Confidence 54332111111 11222222 56677777754 3588899887653322 1111111 12222 35666666
Q ss_pred EeC------CCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC-----CeEEEEEcCCcEEEEecCC
Q psy8448 253 ASS------DGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT-----NTVVIMNMQGQIVRSLSSG 321 (482)
Q Consensus 253 ~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~ 321 (482)
|+. -..+.+||+.+.+-... ......... .+++.. ++ .+++.|+.+ ..+.+||........+...
T Consensus 165 GG~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~-~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~ 240 (318)
T 2woz_A 165 GGKTDDKKCTNRVFIYNPKKGDWKDL-APMKTPRSM-FGVAIH-KG-KIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEF 240 (318)
T ss_dssp CCEESSSCBCCCEEEEETTTTEEEEE-CCCSSCCBS-CEEEEE-TT-EEEEEEEEETTEEEEEEEEEETTTCCEEECCCC
T ss_pred cCCCCCCCccceEEEEcCCCCEEEEC-CCCCCCccc-ceEEEE-CC-EEEEEcCcCCCCccceEEEEECCCCeEEECCCC
Confidence 653 24589999988654332 111111111 122222 33 677777643 3577888865544444432
Q ss_pred cccCcCEEEEEEcCCCCEEEEEeCC
Q psy8448 322 KREGGDFLCCTTSPRGEWIYCVGED 346 (482)
Q Consensus 322 ~~~~~~v~~~~~~~~g~~l~~~~~d 346 (482)
.........+.+ +++.++.|+.+
T Consensus 241 p~~r~~~~~~~~--~~~i~v~GG~~ 263 (318)
T 2woz_A 241 PQERSSISLVSL--AGSLYAIGGFA 263 (318)
T ss_dssp SSCCBSCEEEEE--TTEEEEECCBC
T ss_pred CCcccceEEEEE--CCEEEEECCee
Confidence 211222222322 46666777654
No 331
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.05 E-value=0.051 Score=47.89 Aligned_cols=193 Identities=10% Similarity=0.100 Sum_probs=100.7
Q ss_pred CCCEEEEEeCC-----CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCC-----cEEEEEcC
Q psy8448 111 DGQYLITGSVD-----GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSG-----KVKIWKIA 180 (482)
Q Consensus 111 ~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg-----~i~iwd~~ 180 (482)
++++++.|+.+ ..+.+||..+.+-...-..... ......+.+ ++..++.|+.++ .+.+||+.
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~------r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~ 132 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDR------RSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIK 132 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSC------CBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETT
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCcc------ccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCC
Confidence 56777777744 3588999887764432221111 111222222 567777777553 57788988
Q ss_pred CCeEeEEeecccC-CCeEEEEEccCCCEEEEEECC-------CeEEEEeCCCCceEEE--eeccccceeEEEEcCCCCEE
Q psy8448 181 TGQCLRKLEKAHS-LGVTCIQFSRDNSQILTASFD-------TYVRIHGLKSGKMLKE--FRGHSSFVNDITFTADGHSV 250 (482)
Q Consensus 181 ~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~--~~~~~~~i~~l~~~~~~~~l 250 (482)
+.+....-..... ....++.+ ++..++.|+.+ ..+.+||+.+.+-... +.........+.+ +++.+
T Consensus 133 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iy 208 (302)
T 2xn4_A 133 SNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLY 208 (302)
T ss_dssp TTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEE
T ss_pred CCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEE
Confidence 7754332211111 11222222 56666666542 3588999987653322 2111111122222 56777
Q ss_pred EEEeCC-----CcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC-----CeEEEEEcCCcEEEEec
Q psy8448 251 LSASSD-----GTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT-----NTVVIMNMQGQIVRSLS 319 (482)
Q Consensus 251 ~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~ 319 (482)
+.|+.+ ..+.+||+.+.+-... ......... .+++.. ++ .+++.|+.+ ..+.+||........+.
T Consensus 209 v~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~~~~r~~-~~~~~~-~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 283 (302)
T 2xn4_A 209 AVGGHDGPLVRKSVEVYDPTTNAWRQV-ADMNMCRRN-AGVCAV-NG-LLYVVGGDDGSCNLASVEYYNPTTDKWTVVS 283 (302)
T ss_dssp EECCBSSSSBCCCEEEEETTTTEEEEE-CCCSSCCBS-CEEEEE-TT-EEEEECCBCSSSBCCCEEEEETTTTEEEECS
T ss_pred EECCCCCCcccceEEEEeCCCCCEeeC-CCCCCcccc-CeEEEE-CC-EEEEECCcCCCcccccEEEEcCCCCeEEECC
Confidence 777654 4689999988654332 111111111 122222 33 677777654 35889998666555554
No 332
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.00 E-value=0.14 Score=45.29 Aligned_cols=174 Identities=9% Similarity=0.095 Sum_probs=87.8
Q ss_pred EEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEEC-----C------CeEEEEeCCCCceEEE--
Q psy8448 164 MLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF-----D------TYVRIHGLKSGKMLKE-- 230 (482)
Q Consensus 164 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-----d------g~i~i~d~~~~~~~~~-- 230 (482)
+++.|+ ..+.+||..+++-...-...........+...++..++.|+. . ..+..||..+.+-...
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 84 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP 84 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence 344555 579999998887543111111122333333457778888873 1 1378899887653221
Q ss_pred eeccccceeEEEEcCCCCEEEEEeCC--------CcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeC-
Q psy8448 231 FRGHSSFVNDITFTADGHSVLSASSD--------GTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK- 301 (482)
Q Consensus 231 ~~~~~~~i~~l~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~- 301 (482)
+......- +++.. ++..++.|+.+ ..+.+||..+.+-... ......... .+++. .++ .+++.|+.
T Consensus 85 ~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~-~~~~~-~~~-~iyv~GG~~ 158 (315)
T 4asc_A 85 LPSPRCLF-GLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGES-DPLPYVVYG-HTVLS-HMD-LVYVIGGKG 158 (315)
T ss_dssp BSSCEESC-EEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEEC-CCCSSCCBS-CEEEE-ETT-EEEEECCBC
T ss_pred CCcchhce-eEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeEC-CCCCCcccc-eeEEE-ECC-EEEEEeCCC
Confidence 11111111 22222 55666666632 4589999987653322 111111111 12222 233 67777765
Q ss_pred C-----CeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCc
Q psy8448 302 T-----NTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDM 347 (482)
Q Consensus 302 d-----~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg 347 (482)
+ ..+.+||........+............+.+ +++.++.|+.++
T Consensus 159 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~ 207 (315)
T 4asc_A 159 SDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTD 207 (315)
T ss_dssp TTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECS
T ss_pred CCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCC
Confidence 2 4688999865555555432221222223333 567777777654
No 333
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.99 E-value=0.044 Score=57.65 Aligned_cols=227 Identities=11% Similarity=0.156 Sum_probs=129.7
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe-E
Q psy8448 106 ARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ-C 184 (482)
Q Consensus 106 ~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~-~ 184 (482)
.-.+|..+.+|.=. ..++.|+|+++...+...... .+|.--.|-... .|+..+ +..|..|++.... +
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~---------e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P 138 (1630)
T 1xi4_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---------DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQP 138 (1630)
T ss_pred hccCCCcceEEEec-CCeEEEeehHHhhhhcccccC---------CCceEEEecCCC-eeEEEc-CCeEEEeccCCCCcc
Confidence 34688888777654 678999999988777666554 467777787554 455554 3489999996533 3
Q ss_pred eEEeeccc----CCCeEEEEEccCCCEEEEEE-------CCCeEEEEeCCCCceEEEeeccccceeEEEEc--CCCCEEE
Q psy8448 185 LRKLEKAH----SLGVTCIQFSRDNSQILTAS-------FDTYVRIHGLKSGKMLKEFRGHSSFVNDITFT--ADGHSVL 251 (482)
Q Consensus 185 ~~~~~~~~----~~~v~~i~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~--~~~~~l~ 251 (482)
...+ .-| ...|..-..+++.++++..+ -.|.+.+|..+.+. .+.+.||-+....+... +....++
T Consensus 139 ~k~f-dR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~ 216 (1630)
T 1xi4_A 139 VKMF-DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLF 216 (1630)
T ss_pred HHHH-hcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheeccCCCCCCceEE
Confidence 2222 222 34566667788888877543 34788889876443 34455555444333332 1112222
Q ss_pred E-EeC---CCcEEEEECCCC---cee------eeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEE
Q psy8448 252 S-ASS---DGTVKMWNLKTT---ECT------STFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRS 317 (482)
Q Consensus 252 ~-~~~---dg~i~i~d~~~~---~~~------~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~ 317 (482)
+ +.. .+.++|.++... ... ..+.+......-..++..++.. .++..-+.-|.+.+||+ ++..+..
T Consensus 217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~-g~iy~itk~G~~~~~d~~t~~~i~~ 295 (1630)
T 1xi4_A 217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTCIYM 295 (1630)
T ss_pred EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecccc-CEEEEEecCceEEEEecccchhhhh
Confidence 2 221 368999988543 111 1111111112223467777766 68888999999999999 5655443
Q ss_pred ecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448 318 LSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLV 350 (482)
Q Consensus 318 ~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~ 350 (482)
-.-. ..+|...+-+....-++.....|.|.
T Consensus 296 ~ris---~~~iF~~~~~~~~~g~~~vnr~G~vl 325 (1630)
T 1xi4_A 296 NRIS---GETIFVTAPHEATAGIIGVNRKGQVL 325 (1630)
T ss_pred cccc---CCceEEeccCCCCCceEEEcCCceEE
Confidence 3322 33343333333333344444555554
No 334
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.94 E-value=0.087 Score=55.55 Aligned_cols=210 Identities=9% Similarity=0.108 Sum_probs=125.3
Q ss_pred CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEE
Q psy8448 121 DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQ 200 (482)
Q Consensus 121 dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~ 200 (482)
..+|.|-|+.++..+.+-+.. .-+.-.+|..+.+|.-. ..++.|+|+++...+.... ...+|.-=.
T Consensus 47 ~~~vvIidl~~~~~~~rrpi~-----------AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~--~~e~VvfWk 112 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPIS-----------ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWK 112 (1630)
T ss_pred CceEEEEECCCCCCccccccc-----------chhhccCCCcceEEEec-CCeEEEeehHHhhhhcccc--cCCCceEEE
Confidence 347899998886644322222 22344678777666654 6799999999888777763 345677777
Q ss_pred EccCCCEEEEEECCCeEEEEeCCCC-ceEEEeecc----ccceeEEEEcCCCCEEEEEe-------CCCcEEEEECCCCc
Q psy8448 201 FSRDNSQILTASFDTYVRIHGLKSG-KMLKEFRGH----SSFVNDITFTADGHSVLSAS-------SDGTVKMWNLKTTE 268 (482)
Q Consensus 201 ~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~----~~~i~~l~~~~~~~~l~~~~-------~dg~i~i~d~~~~~ 268 (482)
|-.. +.|+..+ +..|+-|++... .+.+.+..| ...|..-..+++.++++..+ -.|.+.+|..+.+.
T Consensus 113 Wis~-~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~ 190 (1630)
T 1xi4_A 113 WISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV 190 (1630)
T ss_pred ecCC-CeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc
Confidence 7644 3455555 668999999642 344444433 45677888899999987544 34789999987643
Q ss_pred eeeeeeccCCCccceeEEEEc--CCCCCEEEEEeC---CCeEEEEEcCC----cEE------EEecCCcccCcCEEEEEE
Q psy8448 269 CTSTFKSLGASDIAVNSIHLL--PKNTEHFVVCNK---TNTVVIMNMQG----QIV------RSLSSGKREGGDFLCCTT 333 (482)
Q Consensus 269 ~~~~~~~~~~~~~~v~~i~~~--~~~~~~l~~~~~---d~~i~i~d~~~----~~~------~~~~~~~~~~~~v~~~~~ 333 (482)
. +.+. +|-.....+... +....+++.+.. .+.++|.++.. ... ..+........-..++..
T Consensus 191 s-Q~ie---gha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~v 266 (1630)
T 1xi4_A 191 S-QPIE---GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI 266 (1630)
T ss_pred c-hhhh---HhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEe
Confidence 2 2222 443333222221 111123332222 36788888721 111 011111111223346788
Q ss_pred cCCCCEEEEEeCCcEEE
Q psy8448 334 SPRGEWIYCVGEDMVLV 350 (482)
Q Consensus 334 ~~~g~~l~~~~~dg~i~ 350 (482)
++.-..++..+.-|.++
T Consensus 267 s~k~g~iy~itk~G~~~ 283 (1630)
T 1xi4_A 267 SEKHDVVFLITKYGYIH 283 (1630)
T ss_pred ccccCEEEEEecCceEE
Confidence 88888999999999999
No 335
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.94 E-value=0.54 Score=49.69 Aligned_cols=226 Identities=15% Similarity=0.108 Sum_probs=125.7
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCC------CCEEEEEeC-CC
Q psy8448 100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRD------SEMLASGSQ-SG 172 (482)
Q Consensus 100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~------~~~l~~~~~-dg 172 (482)
...|...+.+. .+++.++ ++.+.++++.+++....... .....|.|+++.|. ++++++|.. |+
T Consensus 513 ~~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~-------~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~ 582 (1158)
T 3ei3_A 513 AKNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHT-------EMEHEVACLDITPLGDSNGLSPLCAIGLWTDI 582 (1158)
T ss_dssp CCCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEE-------ECSSCEEEEECCCCSSSTTCCSEEEEEETTTT
T ss_pred CCEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeeccc-------CCCCceEEEEeecCCCCcccccEEEEEECCCC
Confidence 34566666553 3566555 57888888876543322111 12568999999863 468999996 99
Q ss_pred cEEEEEcCCCeEeEEeecccCCCeEEEEEcc--CCCEEEEEECCCeEEEEeCC--CCceEEE---eeccccceeEEEEcC
Q psy8448 173 KVKIWKIATGQCLRKLEKAHSLGVTCIQFSR--DNSQILTASFDTYVRIHGLK--SGKMLKE---FRGHSSFVNDITFTA 245 (482)
Q Consensus 173 ~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~dg~i~i~d~~--~~~~~~~---~~~~~~~i~~l~~~~ 245 (482)
+++|+++.+.+.+.....+......++.+.. ...+|.+|-.||.+..+.++ +++.... +-+ ..++.-..+..
T Consensus 583 tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~ 661 (1158)
T 3ei3_A 583 SARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRS 661 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEES
T ss_pred EEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEee
Confidence 9999999877666544222223444544432 34678899999987666543 4544321 222 33444444444
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEE-EEcCC-CCCEEEEEeCCCeEEEEEcC---CcEEEEecC
Q psy8448 246 DGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSI-HLLPK-NTEHFVVCNKTNTVVIMNMQ---GQIVRSLSS 320 (482)
Q Consensus 246 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i-~~~~~-~~~~l~~~~~d~~i~i~d~~---~~~~~~~~~ 320 (482)
.+..-+.+..+.-..+|.-+ ++.. +... ....+..+ .|+.. .++-++.. .++.++|..+. .-..+++.-
T Consensus 662 ~~~~~V~a~s~rp~liy~~~-~~l~--~s~l--~~~~v~~~~~F~se~~~~g~v~~-~~~~LrI~~i~~~~~~~~~~ipL 735 (1158)
T 3ei3_A 662 LSTTNVFACSDRPTVIYSSN-HKLV--FSNV--NLKEVNYMCPLNSDGYPDSLALA-NNSTLTIGTIDEIQKLHIRTVPL 735 (1158)
T ss_dssp SSCEEEEEESSSCEEEEESS-SSEE--EEEB--SSSCCCEEEEECCSSSTTEEEEE-CSSCEEEEEECCSSSEEEEEEEC
T ss_pred CCceeEEEECCCCEEEEEcC-CceE--Eecc--ChHHhceEeccCcccCCCcEEEE-cCCceEEEEecccCCeeEEEEeC
Confidence 44433334444555555433 2222 2211 11233333 33222 12344443 45569888873 223333333
Q ss_pred CcccCcCEEEEEEcCCCCEEEEEeCC
Q psy8448 321 GKREGGDFLCCTTSPRGEWIYCVGED 346 (482)
Q Consensus 321 ~~~~~~~v~~~~~~~~g~~l~~~~~d 346 (482)
...+..++++|..+.++.+..+
T Consensus 736 ----~~Tprri~y~~~~~~~~v~~~~ 757 (1158)
T 3ei3_A 736 ----YESPRKICYQEVSQCFGVLSSR 757 (1158)
T ss_dssp ----SSEEEEEEEEGGGTEEEEEEEE
T ss_pred ----CCCceEEEEcCCCCEEEEEEEe
Confidence 4567899999998877766543
No 336
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.89 E-value=0.085 Score=46.65 Aligned_cols=192 Identities=11% Similarity=0.087 Sum_probs=99.0
Q ss_pred CCCEEEEEeC----C-----CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC-----CcEEE
Q psy8448 111 DGQYLITGSV----D-----GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS-----GKVKI 176 (482)
Q Consensus 111 ~~~~l~s~~~----d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d-----g~i~i 176 (482)
++++++.|+. + ..+.+||+.+.+-......... ......+.+ +++.++.|+.+ ..+.+
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~------r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 141 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVP------RNRIGVGVI--DGHIYAVGGSHGCIHHNSVER 141 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSC------CBTCEEEEE--TTEEEEECCEETTEECCCEEE
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcC------ccccEEEEE--CCEEEEEcCCCCCcccccEEE
Confidence 5667777765 2 4688999887764433221111 112222223 56677776643 46889
Q ss_pred EEcCCCeEeEEeeccc-CCCeEEEEEccCCCEEEEEECC-----CeEEEEeCCCCceEEE--eeccccceeEEEEcCCCC
Q psy8448 177 WKIATGQCLRKLEKAH-SLGVTCIQFSRDNSQILTASFD-----TYVRIHGLKSGKMLKE--FRGHSSFVNDITFTADGH 248 (482)
Q Consensus 177 wd~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~--~~~~~~~i~~l~~~~~~~ 248 (482)
||+.+.+....-.... ......+.+ ++..++.|+.+ ..+.+||+.+.+-... +......-.++.+ +++
T Consensus 142 yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~ 217 (308)
T 1zgk_A 142 YEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNC 217 (308)
T ss_dssp EETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTE
T ss_pred ECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCE
Confidence 9988765433211111 112222233 56667777654 4688999877653221 1111111222222 566
Q ss_pred EEEEEeCC-----CcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC-----CeEEEEEcCCcEEEEe
Q psy8448 249 SVLSASSD-----GTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT-----NTVVIMNMQGQIVRSL 318 (482)
Q Consensus 249 ~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~ 318 (482)
.++.|+.+ ..+.+||+.+.+-...- ........ .++... ++ .+++.|+.+ ..+.+||........+
T Consensus 218 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~r~~-~~~~~~-~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 293 (308)
T 1zgk_A 218 IYAAGGYDGQDQLNSVERYDVETETWTFVA-PMKHRRSA-LGITVH-QG-RIYVLGGYDGHTFLDSVECYDPDTDTWSEV 293 (308)
T ss_dssp EEEECCBCSSSBCCCEEEEETTTTEEEECC-CCSSCCBS-CEEEEE-TT-EEEEECCBCSSCBCCEEEEEETTTTEEEEE
T ss_pred EEEEeCCCCCCccceEEEEeCCCCcEEECC-CCCCCccc-eEEEEE-CC-EEEEEcCcCCCcccceEEEEcCCCCEEeec
Confidence 67777654 56999999886543321 11111111 122222 33 677777643 4578888854444333
No 337
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.76 E-value=0.027 Score=46.18 Aligned_cols=149 Identities=10% Similarity=-0.034 Sum_probs=81.8
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q psy8448 101 SHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIA 180 (482)
Q Consensus 101 ~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~ 180 (482)
..+.+++|+|+|.+.+. .+|.++-.+..+.....-+.....--..+ -....++.|.|+|.+.++ .||.|.-++-.
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~G-w~~F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGG-WNQFQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSC-GGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccc-cccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 46789999999987666 57777666654432211111100000000 011378899999987666 56988877753
Q ss_pred CCeEe------EEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCce------EEEee-ccccceeEEEEcCCC
Q psy8448 181 TGQCL------RKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKM------LKEFR-GHSSFVNDITFTADG 247 (482)
Q Consensus 181 ~~~~~------~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~-~~~~~i~~l~~~~~~ 247 (482)
+.... ..+-...=..+..+.|.|+|.+.++. |+.++-....+... ...+- ..-.....+.|.+++
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G 193 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG 193 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence 32111 11111112457999999999766665 77764433322110 11111 222334557788888
Q ss_pred CEEEEEeCCCc
Q psy8448 248 HSVLSASSDGT 258 (482)
Q Consensus 248 ~~l~~~~~dg~ 258 (482)
.+.++. +|.
T Consensus 194 ~l~~v~--~g~ 202 (236)
T 1tl2_A 194 TLFGVQ--GGK 202 (236)
T ss_dssp CEEEEE--TTE
T ss_pred cEEEEe--CCe
Confidence 866655 663
No 338
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.72 E-value=0.27 Score=43.14 Aligned_cols=200 Identities=9% Similarity=0.036 Sum_probs=114.0
Q ss_pred EEEcCCCCEEEEEeCC--------------CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe--
Q psy8448 106 ARFSPDGQYLITGSVD--------------GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS-- 169 (482)
Q Consensus 106 ~~~s~~~~~l~s~~~d--------------g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~-- 169 (482)
--++++|++|+.+... ..|+..++..++..... ... +..|++++++|+...
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~-----------~~~--~~~~s~~g~~Iy~~~~~ 124 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLD-----------PDP--CIYASLIGNYIYYLHYD 124 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEE-----------CSC--EEEEEEETTEEEEEEES
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEee-----------cCC--ccEEEEeCCEEEEEeec
Confidence 4468899998877532 36777777655422211 111 236778888888876
Q ss_pred CC--CcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEEC-CCeEEEEeCCCCceEEEeeccccceeEEEEcCC
Q psy8448 170 QS--GKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF-DTYVRIHGLKSGKMLKEFRGHSSFVNDITFTAD 246 (482)
Q Consensus 170 ~d--g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~ 246 (482)
.+ ..|...++... ....+. .+.. .+++++++.|+-.+. ...|...++..+.....+.+ .. ...+.|+
T Consensus 125 ~~~~~~Iy~~~~dGs-~~~~lt-~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~-~~~~~P~ 194 (302)
T 3s25_A 125 TQTATSLYRIRIDGE-EKKKIK-NHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NC-YKPVVLD 194 (302)
T ss_dssp SSSCEEEEEEETTSC-CCEEEE-SSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS---CE-EEEEEEE
T ss_pred CCCCceEEEEECCCC-CeEEEe-CCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Cc-cceeeec
Confidence 33 45555565533 334442 2222 456778888886665 56888889876654433332 22 2345688
Q ss_pred CCEEEEEeCC--CcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEe--CCCeEEEEEcCCcEEEEecCCc
Q psy8448 247 GHSVLSASSD--GTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCN--KTNTVVIMNMQGQIVRSLSSGK 322 (482)
Q Consensus 247 ~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~ 322 (482)
+.+|+-...+ ..|..-++..... ..+. . ..+ ..++|.+ ..++.+. ..+.|...+++|...+.+...
T Consensus 195 g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt---~--~~~--~~~~~~g-~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~- 264 (302)
T 3s25_A 195 DTNVYYMDVNRDNAIVHVNINNPNP-VVLT---E--ANI--EHYNVYG-SLIFYQRGGDNPALCVVKNDGTGFKELAKG- 264 (302)
T ss_dssp TTEEEEEEGGGTTEEEEECSSSCCC-EECS---C--SCE--EEEEEET-TEEEEEECSSSCEEEEEETTSCCCEEEEES-
T ss_pred CCEEEEEEcCCCcEEEEEECCCCCe-EEEe---C--CCc--ceEEECC-CEEEEEECCCCcEEEEEECCCCccEEeeCC-
Confidence 9988876643 3566677765542 3332 1 222 3377777 4555442 346777778877655555432
Q ss_pred ccCcCEEEEEEcCCCCEEEEEe
Q psy8448 323 REGGDFLCCTTSPRGEWIYCVG 344 (482)
Q Consensus 323 ~~~~~v~~~~~~~~g~~l~~~~ 344 (482)
.+. .+++.+.+|+-..
T Consensus 265 ----~~~--~i~i~~d~Iy~td 280 (302)
T 3s25_A 265 ----EFC--NINVTSQYVYFTD 280 (302)
T ss_dssp ----CEE--EEEECSSEEEEEE
T ss_pred ----ccc--eEEEeCCEEEEEE
Confidence 233 3344566666544
No 339
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.71 E-value=0.15 Score=50.84 Aligned_cols=233 Identities=10% Similarity=0.073 Sum_probs=115.8
Q ss_pred CCCCEEEEEeCC----CeEEEEecCCCceeecc-ccccccccccccccEEEEEEcCCCCEEEEEeCC------CcEEEEE
Q psy8448 110 PDGQYLITGSVD----GFIEVWNFTTGKIRKDL-KYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS------GKVKIWK 178 (482)
Q Consensus 110 ~~~~~l~s~~~d----g~v~iwd~~~~~~~~~~-~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d------g~i~iwd 178 (482)
.++.+++.|+.+ ..+.+||..+++..... .... .....-...-..+.+..+++.++.|+.+ ..+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~-~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSS-SEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCC-SCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCC-CCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEe
Confidence 456777777743 46889998887644322 1000 0000001122233332267777777744 3578899
Q ss_pred cCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCC--eEEEEeCCCCceEEEe-----eccccceeEEEEcCC-CCEE
Q psy8448 179 IATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDT--YVRIHGLKSGKMLKEF-----RGHSSFVNDITFTAD-GHSV 250 (482)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~-----~~~~~~i~~l~~~~~-~~~l 250 (482)
+.+.+....-.......-.+++...++..++.|+.++ .+.+||+.+.+-...- ......-.++.+..+ ++.+
T Consensus 475 ~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy 554 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI 554 (695)
T ss_dssp TTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred CCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence 8876543221111111122333324778888887655 6999999876532211 111222234555555 5666
Q ss_pred EEEeC--C-----CcEEEEECCCCce-----eeeeecc-CCCccceeEEEEcCCCCCEEEEEeC--------CCeEEEEE
Q psy8448 251 LSASS--D-----GTVKMWNLKTTEC-----TSTFKSL-GASDIAVNSIHLLPKNTEHFVVCNK--------TNTVVIMN 309 (482)
Q Consensus 251 ~~~~~--d-----g~i~i~d~~~~~~-----~~~~~~~-~~~~~~v~~i~~~~~~~~~l~~~~~--------d~~i~i~d 309 (482)
+.|+. + ..+.+||+.+.+. -..+... ...... .++....++ .+++.|+. ...+.+||
T Consensus 555 v~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~-~~~~~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd 632 (695)
T 2zwa_A 555 ILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYG-SQIKYITPR-KLLIVGGTSPSGLFDRTNSIISLD 632 (695)
T ss_dssp EECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBS-CEEEEEETT-EEEEECCBCSSCCCCTTTSEEEEE
T ss_pred EECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCccc-ceEEEeCCC-EEEEECCccCCCCCCCCCeEEEEE
Confidence 77765 2 3588999988761 1122110 011111 122333324 67777763 35689999
Q ss_pred cCCcEEEEecCCccc-----CcC-EEEEEEcCCCCEEEEEeC
Q psy8448 310 MQGQIVRSLSSGKRE-----GGD-FLCCTTSPRGEWIYCVGE 345 (482)
Q Consensus 310 ~~~~~~~~~~~~~~~-----~~~-v~~~~~~~~g~~l~~~~~ 345 (482)
............... ... -.+++...+|+.++.||.
T Consensus 633 ~~t~~W~~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg 674 (695)
T 2zwa_A 633 PLSETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGG 674 (695)
T ss_dssp TTTTEEEECCCCHHHHHHSCCCCSSCEEECC---CEEEECCE
T ss_pred CCCCeEEEeeccccccCCCCccceeeeEEEeCCCEEEEEeCC
Confidence 965554443321110 000 023444456677777764
No 340
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.69 E-value=0.004 Score=55.52 Aligned_cols=113 Identities=15% Similarity=0.115 Sum_probs=73.9
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEc--cCCCEEEEE--ECCCeEEEEeCCCCceEEEeec----c
Q psy8448 163 EMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFS--RDNSQILTA--SFDTYVRIHGLKSGKMLKEFRG----H 234 (482)
Q Consensus 163 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~--~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~----~ 234 (482)
..++.++.||.|.-+|..+|+...++......++....-. +.+..++.+ +.||.|..++..+|.....+.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 4788999999999999999999999854321233221111 112234444 5899999999988865544431 1
Q ss_pred ccceeE---EEE-c----CCCCEEEEEeCCCcEEEEECCCCceeeeeec
Q psy8448 235 SSFVND---ITF-T----ADGHSVLSASSDGTVKMWNLKTTECTSTFKS 275 (482)
Q Consensus 235 ~~~i~~---l~~-~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 275 (482)
..++.. ... . ..+..+++|+.+|.+...|+++|+.+..+..
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 111211 000 0 1456788999999999999999999888763
No 341
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.66 E-value=0.32 Score=43.08 Aligned_cols=173 Identities=12% Similarity=0.109 Sum_probs=84.9
Q ss_pred EEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEEC----CC-------eEEEEeCCCCceEEE--
Q psy8448 164 MLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF----DT-------YVRIHGLKSGKMLKE-- 230 (482)
Q Consensus 164 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~----dg-------~i~i~d~~~~~~~~~-- 230 (482)
.++.|+. .+..||..+++....-...........+...++..++.|+. ++ .+..||..+.+-...
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 95 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP 95 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence 3444443 48899998877544211111122223333456777788773 11 277889877653221
Q ss_pred eeccccceeEEEEcCCCCEEEEEeCC-------CcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeC--
Q psy8448 231 FRGHSSFVNDITFTADGHSVLSASSD-------GTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK-- 301 (482)
Q Consensus 231 ~~~~~~~i~~l~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-- 301 (482)
+...... .+++.. ++..++.|+.+ ..+.+||..+.+-...-. ....... .+++. .++ .+++.|+.
T Consensus 96 ~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~-~~~~~-~~~-~iyv~GG~~~ 169 (318)
T 2woz_A 96 LPSARCL-FGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKN-LPIKVYG-HNVIS-HNG-MIYCLGGKTD 169 (318)
T ss_dssp BSSCBCS-CEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECC-CSSCEES-CEEEE-ETT-EEEEECCEES
T ss_pred CCccccc-cceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCC-CCCcccc-cEEEE-ECC-EEEEEcCCCC
Confidence 1111111 122222 56677777653 248889988765433211 1111111 12222 333 66676653
Q ss_pred ----CCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCC
Q psy8448 302 ----TNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGED 346 (482)
Q Consensus 302 ----d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~d 346 (482)
-..+.+||........+............+.+ +++.++.|+.+
T Consensus 170 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~ 216 (318)
T 2woz_A 170 DKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVT 216 (318)
T ss_dssp SSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEE
T ss_pred CCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcC
Confidence 24588999965555555432221222223333 56677777654
No 342
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.61 E-value=0.23 Score=44.43 Aligned_cols=146 Identities=11% Similarity=0.077 Sum_probs=83.0
Q ss_pred CCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceE--EEe----eccccceeEEEEcCC---CCEEEEE-e--CCCcEE
Q psy8448 193 SLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKML--KEF----RGHSSFVNDITFTAD---GHSVLSA-S--SDGTVK 260 (482)
Q Consensus 193 ~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~----~~~~~~i~~l~~~~~---~~~l~~~-~--~dg~i~ 260 (482)
-.....|+|.|+|.++++-...|.|++++...++.. ..+ .........|+++|+ +..|... + .++.|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 345789999999986665544899999987665532 211 123456789999995 3445443 2 345566
Q ss_pred EEECCCCc--------eeeeeecc-CCCccceeEEEEcCCCCCEEEEEeC-------------CCeEEEEEcCCcE----
Q psy8448 261 MWNLKTTE--------CTSTFKSL-GASDIAVNSIHLLPKNTEHFVVCNK-------------TNTVVIMNMQGQI---- 314 (482)
Q Consensus 261 i~d~~~~~--------~~~~~~~~-~~~~~~v~~i~~~~~~~~~l~~~~~-------------d~~i~i~d~~~~~---- 314 (482)
-|.+..+. ....+... ....+.-..|.|.|+| .++++.+. .|.|.-.+.++..
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n 189 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN 189 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence 67665421 11111111 1222345679999998 66666442 2445545554431
Q ss_pred ----EEEecCCcccCcCEEEEEEcCCCCEEEE
Q psy8448 315 ----VRSLSSGKREGGDFLCCTTSPRGEWIYC 342 (482)
Q Consensus 315 ----~~~~~~~~~~~~~v~~~~~~~~g~~l~~ 342 (482)
...+... ......++|+|+|.+.++
T Consensus 190 Pf~~~~i~a~G---~RNp~Gla~dp~G~L~~~ 218 (347)
T 3das_A 190 PFPGSPVYSYG---HRNVQGLAWDDKQRLFAS 218 (347)
T ss_dssp SSTTCCEEEBC---CSBCCEEEECTTCCEEEE
T ss_pred CCCCCeEEeeC---CCCcceEEECCCCCEEEE
Confidence 1111111 123457899998876554
No 343
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.56 E-value=0.28 Score=44.30 Aligned_cols=145 Identities=8% Similarity=0.028 Sum_probs=73.8
Q ss_pred CCCEEEEEeC-CCeEEEEecCC--CceeeccccccccccccccccEEEEEEcCCCCEEEEEeC-C---------CcEEEE
Q psy8448 111 DGQYLITGSV-DGFIEVWNFTT--GKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ-S---------GKVKIW 177 (482)
Q Consensus 111 ~~~~l~s~~~-dg~v~iwd~~~--~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~-d---------g~i~iw 177 (482)
++++++.|+. ...+.+||+.+ .+-......... . .....++.+ +++.++.|+. + ..+.+|
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~-~----R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~y 91 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGG-P----RDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKY 91 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTC-C----CBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCC-c----CccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEE
Confidence 5667777763 35788999864 332221111100 0 111222222 5667777765 2 468899
Q ss_pred EcCCCeEeEEeecc-cCCCeEEEEEccCCCEEEEEECC---------------------------------------CeE
Q psy8448 178 KIATGQCLRKLEKA-HSLGVTCIQFSRDNSQILTASFD---------------------------------------TYV 217 (482)
Q Consensus 178 d~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~~~d---------------------------------------g~i 217 (482)
|+.+.+-...-... ....-.+++. .+++.++.|+.+ ..+
T Consensus 92 d~~~~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (357)
T 2uvk_A 92 NPKTNSWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFL 170 (357)
T ss_dssp ETTTTEEEECSCCCSSCCSSEEEEE-ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEE
T ss_pred eCCCCcEEECCCCCCcccccceEEE-ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccE
Confidence 99877543321111 1111122222 467777888754 579
Q ss_pred EEEeCCCCceEE--EeeccccceeEEEEcCCCCEEEEEeC------CCcEEEEEC
Q psy8448 218 RIHGLKSGKMLK--EFRGHSSFVNDITFTADGHSVLSASS------DGTVKMWNL 264 (482)
Q Consensus 218 ~i~d~~~~~~~~--~~~~~~~~i~~l~~~~~~~~l~~~~~------dg~i~i~d~ 264 (482)
.+||+.+.+-.. .+......-.+++.. +++.++.|+. ...+.+||+
T Consensus 171 ~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~ 224 (357)
T 2uvk_A 171 LSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDF 224 (357)
T ss_dssp EEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEEC
T ss_pred EEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEe
Confidence 999998765322 222111111233332 5566666653 345777887
No 344
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.52 E-value=0.83 Score=46.17 Aligned_cols=239 Identities=13% Similarity=0.132 Sum_probs=131.0
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceee--ccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy8448 101 SHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRK--DLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWK 178 (482)
Q Consensus 101 ~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~--~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd 178 (482)
..|.++.-..+|.+.+ |+.+| +..++..+++... .+....... ......|.++.-.+++++ -.|+ ++-+..+|
T Consensus 324 ~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~v~~i~~d~~g~l-Wigt-~~GL~~~~ 398 (758)
T 3ott_A 324 NQFYSLFRDSKGFYWF-GGANG-LIRFTDPAGERHDAIWYRMGDKTY-PLSHNRIRHIYEDKEQQL-WIAT-DGSINRYD 398 (758)
T ss_dssp CBEEEEEECTTCCEEE-EETTE-EEEESCTTSSCCCCEEECTTCSSS-CCSCSCEEEEEECTTSCE-EEEE-TTEEEEEE
T ss_pred ceEEEEEEcCCCCEEE-eeCCc-ceeecccccccceeEEeccCCcCC-CCCCCceEEEEECCCCCE-EEEe-CCcHhhcC
Confidence 4688888888887655 44555 6667655432111 111000000 001346888888888764 4455 45689999
Q ss_pred cCCCeEeEEeecc-----cCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCC-----ceE---EEee---c-cccceeEE
Q psy8448 179 IATGQCLRKLEKA-----HSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSG-----KML---KEFR---G-HSSFVNDI 241 (482)
Q Consensus 179 ~~~~~~~~~~~~~-----~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~---~~~~---~-~~~~i~~l 241 (482)
..+++...-.... ....|.++...+++ .|..|+..+-|.++|.++. ... ..+. + ....|.++
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g-~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i 477 (758)
T 3ott_A 399 YATRQFIHYNIVDNTGTYNTNWTYYIFEDTAG-QLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQI 477 (758)
T ss_dssp TTTTEEEEEEEECCC--CBSSSEEEEEECTTS-EEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEE
T ss_pred cCCCcEEEeecCCCcCCCCCceEEEEEEcCCC-CEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeE
Confidence 8877543321101 22457888776665 5777887777888885421 111 1111 1 12358899
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCC
Q psy8448 242 TFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSG 321 (482)
Q Consensus 242 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 321 (482)
...++|+..+.++..+-|..+|..+++..............+.++....+| .+. .++.. -+..++........+...
T Consensus 478 ~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g-~lW-igt~~-Gl~~~~~~~~~~~~~~~~ 554 (758)
T 3ott_A 478 IPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDG-LLW-VGFHG-GVMRINPKDESQQSISFG 554 (758)
T ss_dssp EECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTS-CEE-EEETT-EEEEECC--CCCCBCCCC
T ss_pred EEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCC-CEE-EEecC-ceEEEecCCCceEEeccc
Confidence 999988866533334458889988765433211100113457778777766 444 45554 477888743333333211
Q ss_pred cccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448 322 KREGGDFLCCTTSPRGEWIYCVGEDMVLV 350 (482)
Q Consensus 322 ~~~~~~v~~~~~~~~g~~l~~~~~dg~i~ 350 (482)
......|.++... +| .|..++.+|..+
T Consensus 555 gl~~~~i~~i~~~-~g-~lWi~t~~Gl~~ 581 (758)
T 3ott_A 555 SFSNNEILSMTCV-KN-SIWVSTTNGLWI 581 (758)
T ss_dssp C---CCEEEEEEE-TT-EEEEEESSCEEE
T ss_pred CCCccceEEEEEC-CC-CEEEECCCCeEE
Confidence 1123457777664 55 566666777544
No 345
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.51 E-value=0.33 Score=45.47 Aligned_cols=106 Identities=10% Similarity=0.131 Sum_probs=61.3
Q ss_pred CCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceE--EEeec------cccceeEEEEcCC---CCEEEEEeC-------
Q psy8448 194 LGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKML--KEFRG------HSSFVNDITFTAD---GHSVLSASS------- 255 (482)
Q Consensus 194 ~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~------~~~~i~~l~~~~~---~~~l~~~~~------- 255 (482)
.....|+|.|+|+++++-...+.|++++..+++.. ..+.. .......|+|+|+ +..|.+...
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 35679999999986665443347998887655432 22221 2345679999995 555554432
Q ss_pred ------CCcEEEEECCCC--ce---eeeeecc-CCCccceeEEEEcCCCCCEEEEEe
Q psy8448 256 ------DGTVKMWNLKTT--EC---TSTFKSL-GASDIAVNSIHLLPKNTEHFVVCN 300 (482)
Q Consensus 256 ------dg~i~i~d~~~~--~~---~~~~~~~-~~~~~~v~~i~~~~~~~~~l~~~~ 300 (482)
...|.-|++... .. ...+... ....+....|+|.|+| .++++.+
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~~G 162 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIG 162 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS-CEEEEEC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC-eEEEEEC
Confidence 234666665432 11 1111111 1223456899999999 6666644
No 346
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.50 E-value=0.58 Score=44.19 Aligned_cols=220 Identities=11% Similarity=0.121 Sum_probs=128.4
Q ss_pred CCCEEEEEe-CCCeEEEEecCCCceeeccccccccccccccccEEEEEEc--CCCCEEEEEeC-------CCcE------
Q psy8448 111 DGQYLITGS-VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYS--RDSEMLASGSQ-------SGKV------ 174 (482)
Q Consensus 111 ~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~~~l~~~~~-------dg~i------ 174 (482)
||++|+.-. .+..|-.-++..-++.+.+..+. ...+.++.|- |+-.|++.++. ||..
T Consensus 141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn-------~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~ 213 (638)
T 3sbq_A 141 DGKYLFINDKANSRVARIRLDIMKCDKMITVPN-------VQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDE 213 (638)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECTT-------CSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTST
T ss_pred eeEEEEEecCCCcceEEEECCcEeeceeEeCCC-------CcCcccccccccCCccEEEecceeeccCCCCCcccccCCh
Confidence 678888776 45678888888877766665543 3567788876 67777777764 2321
Q ss_pred ------EEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCC---------------------------------
Q psy8448 175 ------KIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDT--------------------------------- 215 (482)
Q Consensus 175 ------~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg--------------------------------- 215 (482)
...|..+.+...++. -......+...+++.+.++.+.+.
T Consensus 214 ~~y~~f~~iD~~tm~v~~Qv~--v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~ 291 (638)
T 3sbq_A 214 NSYTMYNAIDAETMEMAFQVI--VDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGD 291 (638)
T ss_dssp TEEEEEEEEETTTCSEEEEEE--ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTC
T ss_pred hhceEEEEEcCCccEEEEEEE--cCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCC
Confidence 112222222222221 122333445566777777766431
Q ss_pred -------eEEEEeCCC----CceEEEeeccccceeEEEEcCCCCEEEEEeC-CCcEEEEECCCCce-----e----eeee
Q psy8448 216 -------YVRIHGLKS----GKMLKEFRGHSSFVNDITFTADGHSVLSASS-DGTVKMWNLKTTEC-----T----STFK 274 (482)
Q Consensus 216 -------~i~i~d~~~----~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-dg~i~i~d~~~~~~-----~----~~~~ 274 (482)
.|.+.|.+. +..+..+-.-......+..+|||+++++++. +.++.++|++.... + ..+.
T Consensus 292 ~~~~~g~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ 371 (638)
T 3sbq_A 292 FITLGDSKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIV 371 (638)
T ss_dssp CBCCTTCCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEE
T ss_pred eEEECCCCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceE
Confidence 244444443 2222222222344567899999999988764 78899999884211 0 0010
Q ss_pred ccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCC-----------cEEEEecCCcccCcCEEEEEE------cCCC
Q psy8448 275 SLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQG-----------QIVRSLSSGKREGGDFLCCTT------SPRG 337 (482)
Q Consensus 275 ~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~-----------~~~~~~~~~~~~~~~v~~~~~------~~~g 337 (482)
....-.......+|.++| ..+.+---|..|.-|++.. ..+..+..+- .+-.+.- .++|
T Consensus 372 ae~e~GlGPlHt~Fd~~G-~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Y----qpGH~~~~~get~~~dG 446 (638)
T 3sbq_A 372 GEPELGLGPLHTTFDGRG-NAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHY----QPGHLHASLCETNEADG 446 (638)
T ss_dssp ECCBCCSCEEEEEECSSS-EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSS----CEEEEEETTTTSTTCCS
T ss_pred eeccCCCcccEEEECCCC-ceEeeeeecceEEEEeccHHHHHhcCccCCeeeecccccc----CCcccccCCCccCCCCc
Confidence 000223455788999998 6777777999999999842 3455555432 2223322 5788
Q ss_pred CEEEEEe
Q psy8448 338 EWIYCVG 344 (482)
Q Consensus 338 ~~l~~~~ 344 (482)
++|++..
T Consensus 447 k~lv~ln 453 (638)
T 3sbq_A 447 KWLVALS 453 (638)
T ss_dssp CEEEEEE
T ss_pred cEEEEec
Confidence 8888765
No 347
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.98 E-value=0.12 Score=46.71 Aligned_cols=195 Identities=9% Similarity=0.071 Sum_probs=91.9
Q ss_pred CCCEEEEEeC-C---------CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC---------
Q psy8448 111 DGQYLITGSV-D---------GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS--------- 171 (482)
Q Consensus 111 ~~~~l~s~~~-d---------g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d--------- 171 (482)
++++++.|+. + ..+.+||+.+.+-.......+. . .....++. .+++.++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~-~----r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~ 137 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPM-G----MAGHVTFV--HNGKAYVTGGVNQNIFNGYFE 137 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSS-C----CSSEEEEE--ETTEEEEEECCCHHHHHHHHH
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCc-c----cccceEEE--ECCEEEEEeCcCCCcCccccc
Confidence 5667777765 2 4689999988764433222111 0 11222222 467777888754
Q ss_pred ------------------------------CcEEEEEcCCCeEeEEeecccCCCe-EEEEEccCCCEEEEEEC------C
Q psy8448 172 ------------------------------GKVKIWKIATGQCLRKLEKAHSLGV-TCIQFSRDNSQILTASF------D 214 (482)
Q Consensus 172 ------------------------------g~i~iwd~~~~~~~~~~~~~~~~~v-~~i~~~~~~~~l~~~~~------d 214 (482)
..+.+||+.+.+....-........ .+++.. ++..++.|+. .
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~ 216 (357)
T 2uvk_A 138 DLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRT 216 (357)
T ss_dssp HHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEEC
T ss_pred chhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCccc
Confidence 4789999887754433211111111 222222 5666666653 3
Q ss_pred CeEEEEeC--CCCceE--EEeeccccceeEEEEcCCCCEEEEEeCC----------------------CcEEEEECCCCc
Q psy8448 215 TYVRIHGL--KSGKML--KEFRGHSSFVNDITFTADGHSVLSASSD----------------------GTVKMWNLKTTE 268 (482)
Q Consensus 215 g~i~i~d~--~~~~~~--~~~~~~~~~i~~l~~~~~~~~l~~~~~d----------------------g~i~i~d~~~~~ 268 (482)
..+.+||+ .+.+-. ..+........+.+...++..++.|+.+ ..+.+||+.+.+
T Consensus 217 ~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~ 296 (357)
T 2uvk_A 217 DAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK 296 (357)
T ss_dssp CCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---
T ss_pred CceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCc
Confidence 45777877 333221 1111111111111222356666766632 257889988765
Q ss_pred eeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCC------eEEEEEcC-CcEEEE
Q psy8448 269 CTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTN------TVVIMNMQ-GQIVRS 317 (482)
Q Consensus 269 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~------~i~i~d~~-~~~~~~ 317 (482)
-... .........-.++. .++ .+++.|+.++ .+.+++++ ++....
T Consensus 297 W~~~-~~~p~~r~~~~~~~--~~~-~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 297 WDKS-GELSQGRAYGVSLP--WNN-SLLIIGGETAGGKAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp CEEE-EECSSCCBSSEEEE--ETT-EEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred eeeC-CCCCCCcccceeEE--eCC-EEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence 3322 11111111112222 234 6777777542 35556774 443333
No 348
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.91 E-value=1.2 Score=44.38 Aligned_cols=152 Identities=9% Similarity=0.105 Sum_probs=81.7
Q ss_pred CCCCEEEEEeCC----CcEEEEEcCCCeEeEEe-e-----cccCCCeEEEEEcc-CCCEEEEEECC------CeEEEEeC
Q psy8448 160 RDSEMLASGSQS----GKVKIWKIATGQCLRKL-E-----KAHSLGVTCIQFSR-DNSQILTASFD------TYVRIHGL 222 (482)
Q Consensus 160 ~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~-~-----~~~~~~v~~i~~~~-~~~~l~~~~~d------g~i~i~d~ 222 (482)
.++..++.|+.+ ..+.+||..+++....- . ......-.+++..+ ++..++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456677777753 46889998877543322 1 01111122333333 67777777644 35888998
Q ss_pred CCCceEE--EeeccccceeEEEEcCCCCEEEEEeCCC--cEEEEECCCCceeeeee--ccCCCccceeEEEEcCCCCCEE
Q psy8448 223 KSGKMLK--EFRGHSSFVNDITFTADGHSVLSASSDG--TVKMWNLKTTECTSTFK--SLGASDIAVNSIHLLPKNTEHF 296 (482)
Q Consensus 223 ~~~~~~~--~~~~~~~~i~~l~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~l 296 (482)
.+.+-.. .+..... -.+++...++..++.|+.++ .+.+||..+.+-...-. ...........+.+......++
T Consensus 476 ~t~~W~~~~~~p~~R~-~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy 554 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRF-RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI 554 (695)
T ss_dssp TTTEEEECCCCSBCCB-SCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred CCCcEEECCCCCCCcc-cceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence 8754322 1111111 12333324778888887654 69999998865432211 0111122223355555423677
Q ss_pred EEEeC--C-----CeEEEEEcCC
Q psy8448 297 VVCNK--T-----NTVVIMNMQG 312 (482)
Q Consensus 297 ~~~~~--d-----~~i~i~d~~~ 312 (482)
+.|+. + +.+.+||+..
T Consensus 555 v~GG~~~~~~~~~~~v~~yd~~~ 577 (695)
T 2zwa_A 555 ILGGGFMDQTTVSDKAIIFKYDA 577 (695)
T ss_dssp EECCBCTTSSCBCCEEEEEEECT
T ss_pred EECCcCCCCCeeeCcEEEEEccC
Confidence 77765 2 4688999843
No 349
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=94.45 E-value=2.9 Score=38.21 Aligned_cols=220 Identities=8% Similarity=0.023 Sum_probs=107.7
Q ss_pred CEEEEEeCCCeEEEEecCC-CceeeccccccccccccccccEEEEEEcC-CCCEEEEEeCCC----cEEEEEcCCCeEeE
Q psy8448 113 QYLITGSVDGFIEVWNFTT-GKIRKDLKYQAQDNFMLMEEAVMSLAYSR-DSEMLASGSQSG----KVKIWKIATGQCLR 186 (482)
Q Consensus 113 ~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~~~~~dg----~i~iwd~~~~~~~~ 186 (482)
..|..|+..| +.+++... ++.-....... ....|.+|++.| +...|.+++..| .|...+ ..++.-.
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~------~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~ 94 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVF------LGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWT 94 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEES------TTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCE
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccC------CCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCce
Confidence 3566777767 55555432 22111111000 135699999998 334455555444 343332 2333222
Q ss_pred Eeecc-------------cCCCeEEEEEcc-C-CCEEEEEECCCeEEEEeCCCCceEEEeec------------------
Q psy8448 187 KLEKA-------------HSLGVTCIQFSR-D-NSQILTASFDTYVRIHGLKSGKMLKEFRG------------------ 233 (482)
Q Consensus 187 ~~~~~-------------~~~~v~~i~~~~-~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------------------ 233 (482)
.+... ....|.++++.| + ...+.++...+.|...+ +.++.-..+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~ 173 (394)
T 3b7f_A 95 EATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGT 173 (394)
T ss_dssp ECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----
T ss_pred ECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCC
Confidence 22111 112477888987 2 45666666666666554 23333222211
Q ss_pred -cccceeEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeeeeec-cCC---------CccceeEEEEcCCCCCEEEEEeC
Q psy8448 234 -HSSFVNDITFTAD-GHSVLSASSDGTVKMWNLKTTECTSTFKS-LGA---------SDIAVNSIHLLPKNTEHFVVCNK 301 (482)
Q Consensus 234 -~~~~i~~l~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~---------~~~~v~~i~~~~~~~~~l~~~~~ 301 (482)
....+.+|.++|. ...|..+..++.|...+ ..++.-..+.. ... ....+.++.+.|..+..++++..
T Consensus 174 ~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~ 252 (394)
T 3b7f_A 174 PDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH 252 (394)
T ss_dssp CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET
T ss_pred CCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC
Confidence 1235788999873 34455555444444332 22322222210 000 01348899999975567777765
Q ss_pred CCeEEEEEcCCcEEEEecCCcccC---cCEEEEEEcCC-CCEEEEEe
Q psy8448 302 TNTVVIMNMQGQIVRSLSSGKREG---GDFLCCTTSPR-GEWIYCVG 344 (482)
Q Consensus 302 d~~i~i~d~~~~~~~~~~~~~~~~---~~v~~~~~~~~-g~~l~~~~ 344 (482)
.+ |...+-.++....+.... .. ..+.+++++|. ...|+++.
T Consensus 253 ~g-l~~s~D~G~tW~~~~~~l-~~~~~~~~~~i~~~p~~~~~l~~~t 297 (394)
T 3b7f_A 253 CG-IYRMDRREGVWKRIGDAM-PREVGDIGFPIVVHQRDPRTVWVFP 297 (394)
T ss_dssp TE-EEEEETTTTEEECGGGGS-CTTTCSCEEEEEECSSCTTCEEEEE
T ss_pred Ce-EEEeCCCCCcceECCCCC-CCCCccceEEEEECCCCCCEEEEEe
Confidence 44 555554566655554211 11 33567888763 34444443
No 350
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=93.95 E-value=3.6 Score=37.51 Aligned_cols=182 Identities=14% Similarity=0.067 Sum_probs=92.1
Q ss_pred CEEEEEeCCCcEEEEEcCC-CeEeEEe-ecccCCCeEEEEEcc-CCCEEEEEECCC----eEEEEeCCCCceEEEeec--
Q psy8448 163 EMLASGSQSGKVKIWKIAT-GQCLRKL-EKAHSLGVTCIQFSR-DNSQILTASFDT----YVRIHGLKSGKMLKEFRG-- 233 (482)
Q Consensus 163 ~~l~~~~~dg~i~iwd~~~-~~~~~~~-~~~~~~~v~~i~~~~-~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~-- 233 (482)
..|.+++..| +.+++... +.....+ .......|.+|++.| +...|.+++..| .|...+ +.++.-..+..
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~ 100 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPP 100 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccc
Confidence 3677777776 55555332 2222211 012345699999998 334455555455 454443 33332222211
Q ss_pred ------------cccceeEEEEcCC--CCEEEEEeCCCcEEEEECCCCceeeeeecc----------------CCCccce
Q psy8448 234 ------------HSSFVNDITFTAD--GHSVLSASSDGTVKMWNLKTTECTSTFKSL----------------GASDIAV 283 (482)
Q Consensus 234 ------------~~~~i~~l~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------------~~~~~~v 283 (482)
....|.++++.|. ...+.+++..+.|...+ ..++.-..+... ......+
T Consensus 101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i 179 (394)
T 3b7f_A 101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKM 179 (394)
T ss_dssp CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCce
Confidence 1124778899872 45566666555554443 223222222110 0122457
Q ss_pred eEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcc----c------CcCEEEEEEcCC-CCEEEEEeCCc
Q psy8448 284 NSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKR----E------GGDFLCCTTSPR-GEWIYCVGEDM 347 (482)
Q Consensus 284 ~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----~------~~~v~~~~~~~~-g~~l~~~~~dg 347 (482)
.+|.+.|.....++++..++.|...+-.++....+..... . ...+.+++++|+ ...|+++...+
T Consensus 180 ~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 180 HSILVDPRDPKHLYIGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp EEEEECTTCTTCEEEEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred eEEEECCCCCCEEEEEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 8899988543455555555555544444554444432110 0 134889999986 46777777655
No 351
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=93.51 E-value=4.9 Score=37.58 Aligned_cols=237 Identities=11% Similarity=0.105 Sum_probs=114.4
Q ss_pred cEEEEEEcCCCC-EEEEEeCCCeEEEEecCCCceeeccccccccccc-----cccccEEEEEEcCC---CCEEEEE-eC-
Q psy8448 102 HVECARFSPDGQ-YLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFM-----LMEEAVMSLAYSRD---SEMLASG-SQ- 170 (482)
Q Consensus 102 ~v~~~~~s~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-----~h~~~i~~l~~~~~---~~~l~~~-~~- 170 (482)
.-..|+|.|+|. .|+++...|.|++++.........+. .....+. ..+.....|+|+|+ ..+|.+. +.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~-~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYL-DIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSE-ECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeec-CCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 467899999996 45555678999999754221111110 0000010 12457889999996 2333332 21
Q ss_pred -C----------CcEEEEEcCC----------CeEeEEeec-ccCCCeEEEEEccCCCEEEEEECC--------------
Q psy8448 171 -S----------GKVKIWKIAT----------GQCLRKLEK-AHSLGVTCIQFSRDNSQILTASFD-------------- 214 (482)
Q Consensus 171 -d----------g~i~iwd~~~----------~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~d-------------- 214 (482)
+ ..|.-|.+.. .+.+..+.. ...-....|+|.|||.+.++.+..
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~ 173 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLS 173 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcC
Confidence 1 1344455532 123333311 112236789999999877765543
Q ss_pred ---CeEEEEeCCCC------c---------------eEEEeeccccceeEEEEcCC-----CC-EEEEEeCCC----cEE
Q psy8448 215 ---TYVRIHGLKSG------K---------------MLKEFRGHSSFVNDITFTAD-----GH-SVLSASSDG----TVK 260 (482)
Q Consensus 215 ---g~i~i~d~~~~------~---------------~~~~~~~~~~~i~~l~~~~~-----~~-~l~~~~~dg----~i~ 260 (482)
|.|.-.|.+.. . .+. -.+|.. ...++|+|. |+ ++..+...| .-.
T Consensus 174 ~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~-a~G~RN-p~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~e 251 (463)
T 2wg3_C 174 DFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVF-AHGLHD-PGRCAVDRHPTDININLTILCSDSNGKNRSSAR 251 (463)
T ss_dssp SCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEE-EECCSS-CCBEEEESSCSSTTCSEEEEEECC------CEE
T ss_pred CCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEE-EECCCC-cceEEECCCCCCcccceEEEecccCCCCCCCCe
Confidence 23444454431 0 011 123333 467899996 34 344433212 123
Q ss_pred EEECCCCc------eeeeeeccCCC-ccceeEEEEcCCC-----CCEEEEEeCCCeEEEEEcCCc----EEEEec-C---
Q psy8448 261 MWNLKTTE------CTSTFKSLGAS-DIAVNSIHLLPKN-----TEHFVVCNKTNTVVIMNMQGQ----IVRSLS-S--- 320 (482)
Q Consensus 261 i~d~~~~~------~~~~~~~~~~~-~~~v~~i~~~~~~-----~~~l~~~~~d~~i~i~d~~~~----~~~~~~-~--- 320 (482)
|..+..+. ++..+. .+ ...+..+.|-... ...++++...+.|....++.. ....+. .
T Consensus 252 i~~i~~G~~yG~~~P~~~~~---~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~ 328 (463)
T 2wg3_C 252 ILQIIKGKDYESEPSLLEFK---PFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSG 328 (463)
T ss_dssp EEEEC----CCSCCCCEECC---C----CEEEEEECCCSSCTTTTTCEEEEETTSCEEEEEC-----CCEEEEECEEETT
T ss_pred EeeeccCCCCCCCCCeEEee---CCCCccccceEEEeCCCChhhcceEEEecCCCcEEEEEeCCCCceeeEEEeecCCcc
Confidence 33333222 222221 11 1456677774321 122455555576666655321 111221 0
Q ss_pred --CcccCcCEEEEEEcCCCCEEEEEe
Q psy8448 321 --GKREGGDFLCCTTSPRGEWIYCVG 344 (482)
Q Consensus 321 --~~~~~~~v~~~~~~~~g~~l~~~~ 344 (482)
.......+..+...|||.++++..
T Consensus 329 ~~~~~~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 329 SCRGYFSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp SSCSCCCSEEEEEEECTTCCEEEEEE
T ss_pred cccccccCcceEEEECCCCCEEEEec
Confidence 011135789999999998888765
No 352
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=93.43 E-value=3.5 Score=35.62 Aligned_cols=217 Identities=13% Similarity=0.010 Sum_probs=111.7
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy8448 102 HVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIAT 181 (482)
Q Consensus 102 ~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~ 181 (482)
.|..++....-. ++. . ||.|+.|-......+.. +.. ....|..++...+.. ++. . ||.|..|-...
T Consensus 25 ~i~~ia~G~~h~-~~l-~-~G~v~~wG~n~~Gqlg~-p~~-------~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~ 90 (282)
T 3qhy_B 25 GVDAIAGGYFHG-LAL-K-GGKVLGWGANLNGQLTM-PAA-------TQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNE 90 (282)
T ss_dssp SCCEEEECSSEE-EEE-E-TTEEEEEECCSSSTTSC-CGG-------GGSCCCEEEECSSEE-EEE-E-TTEEEEEECCT
T ss_pred CCcEEEeCCCeE-EEE-E-CCEEEEEeCCCCCCCCC-Ccc-------CCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCC
Confidence 466666654322 222 4 89999997654322211 111 123576776654432 333 4 89999997543
Q ss_pred CeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEE
Q psy8448 182 GQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKM 261 (482)
Q Consensus 182 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i 261 (482)
...+.. ...-...|..++...+ +.+.-. +|.|+.|-....-.+.........|..++...+. .+.-. ||.|..
T Consensus 91 ~Gqlg~-P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~--~~~l~-~G~v~~ 163 (282)
T 3qhy_B 91 DGQTTV-PAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT--ALAVK-NGGVIA 163 (282)
T ss_dssp TSTTCC-CGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE--EEEEE-TTEEEE
T ss_pred CCCCCC-CcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE--EEEEE-CCEEEE
Confidence 222111 1112346777777544 333344 9999999765422111111223457666654432 23334 788999
Q ss_pred EECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC--CcEEEEecCCcccCcCEEEEEEcCCCCE
Q psy8448 262 WNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ--GQIVRSLSSGKREGGDFLCCTTSPRGEW 339 (482)
Q Consensus 262 ~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~~~v~~~~~~~~g~~ 339 (482)
|-......+..-. .....|..++.-.. ..++. .+|.+..|-.. ++.-... .....|..++..... .
T Consensus 164 wG~n~~gqlg~p~---~~~~~v~~i~~G~~--hs~al--~~G~v~~wG~n~~gqlg~p~----~~~~~v~~i~~G~~h-~ 231 (282)
T 3qhy_B 164 WGDNYFGQTTVPA---EAQSGVDDVAGGIF--HSLAL--KDGKVIAWGDNRYKQTTVPT----EALSGVSAIASGEWY-S 231 (282)
T ss_dssp EECCTTSTTSCCG---GGGSSEEEEEECSS--EEEEE--ETTEEEEEECCTTSTTCCCG----GGGSSCCEEEECSSC-E
T ss_pred ecCCCCCCCCCce---ecCCCeEEEEecCC--EEEEE--ECCeEEEEECCCCCCCCCCc----ccCCCceEEEcCCCE-E
Confidence 9765422111110 12345777766543 23344 59999999763 3321111 113456667665443 3
Q ss_pred EEEEeCCcEEEEEe
Q psy8448 340 IYCVGEDMVLVVRL 353 (482)
Q Consensus 340 l~~~~~dg~i~iw~ 353 (482)
++ -. ||.++.|=
T Consensus 232 ~a-l~-~g~v~~wG 243 (282)
T 3qhy_B 232 LA-LK-NGKVIAWG 243 (282)
T ss_dssp EE-EE-TTEEEEES
T ss_pred EE-EE-CCEEEEec
Confidence 33 33 99999663
No 353
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=93.06 E-value=4.9 Score=36.28 Aligned_cols=216 Identities=9% Similarity=0.013 Sum_probs=121.3
Q ss_pred CCcEEEEEEcCCCCEEEEEeC---------------CCeEEEEecCCC--ceeeccccccccccccccccEEEEEEc---
Q psy8448 100 KSHVECARFSPDGQYLITGSV---------------DGFIEVWNFTTG--KIRKDLKYQAQDNFMLMEEAVMSLAYS--- 159 (482)
Q Consensus 100 ~~~v~~~~~s~~~~~l~s~~~---------------dg~v~iwd~~~~--~~~~~~~~~~~~~~~~h~~~i~~l~~~--- 159 (482)
=-.|..+...+++++-+.=+. --.|.+||+.++ +.++++..+..... ....+..+.+.
T Consensus 86 lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~--~~S~l~di~VD~~~ 163 (381)
T 3q6k_A 86 LTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVE--KPTYFGGFAVDVAN 163 (381)
T ss_dssp SSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCC--CGGGEEEEEEEESC
T ss_pred eEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcc--cCCccceEEEeccc
Confidence 346888888887766553211 126889999999 88888776543221 23567888887
Q ss_pred CC----CCEEEEEe-CCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeecc
Q psy8448 160 RD----SEMLASGS-QSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGH 234 (482)
Q Consensus 160 ~~----~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 234 (482)
|+ +.++..+. ..+-|.++|+.+++..+.. |.. |.|+....++. +|.-.- -
T Consensus 164 ~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~---~~~------~~pd~~~~~~i--~G~~~~--------------~ 218 (381)
T 3q6k_A 164 PKGDCSETFVYITNFLRGALFIYDHKKQDSWNVT---HPT------FKAERPTKFDY--GGKEYE--------------F 218 (381)
T ss_dssp TTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEE---CGG------GSCCSCEEEEE--TTEEEE--------------E
T ss_pred CCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEc---cCC------CccccCcceEE--CCEEeE--------------e
Confidence 22 33444443 4678999999999877765 221 33441111111 222111 1
Q ss_pred ccceeEEEEcCC----CCEEEEEeCCCcEEEEECC-----CCceeeeeeccCCC--ccceeEEEEcCCCCCEEEEEeCCC
Q psy8448 235 SSFVNDITFTAD----GHSVLSASSDGTVKMWNLK-----TTECTSTFKSLGAS--DIAVNSIHLLPKNTEHFVVCNKTN 303 (482)
Q Consensus 235 ~~~i~~l~~~~~----~~~l~~~~~dg~i~i~d~~-----~~~~~~~~~~~~~~--~~~v~~i~~~~~~~~~l~~~~~d~ 303 (482)
...+..|+++|+ ++.|.-....+ -++|.+. +......++.+... ...-..+++.+..+.++++--..+
T Consensus 219 ~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~ 297 (381)
T 3q6k_A 219 KAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTK 297 (381)
T ss_dssp CCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSS
T ss_pred ccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCC
Confidence 245888999987 77777666554 2334332 22211222211111 123334566533337777778889
Q ss_pred eEEEEEcCC-----cEEEEecCCcccCcCEEEEEEcCCCCEEEEEe
Q psy8448 304 TVVIMNMQG-----QIVRSLSSGKREGGDFLCCTTSPRGEWIYCVG 344 (482)
Q Consensus 304 ~i~i~d~~~-----~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~ 344 (482)
.|..|+..+ .....+.... .-.....+.+.++|.+.+..+
T Consensus 298 aI~~w~~~~~~~~~~n~~~l~~d~-~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 298 QVSCWNTQKMPLRMKNTDVVYTSS-RFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp EEEEEETTSCSBCGGGEEEEEECT-TCCSEEEEEECTTSCEEEEEC
T ss_pred eEEEEeCCCCccccCceEEEEECC-CccccCeEEECCCCeEEEEEC
Confidence 999999865 2223333222 244567788877776555443
No 354
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=90.84 E-value=8.2 Score=34.10 Aligned_cols=232 Identities=12% Similarity=0.132 Sum_probs=129.1
Q ss_pred CCEEEEEeCCCeEEEEecCCCc-------eeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEc---CC
Q psy8448 112 GQYLITGSVDGFIEVWNFTTGK-------IRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKI---AT 181 (482)
Q Consensus 112 ~~~l~s~~~dg~v~iwd~~~~~-------~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~---~~ 181 (482)
...+++-+.+|.|+--.+.+-+ -....... ..+.+..+........|+.-+..|.++.... ..
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k-------e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~ 75 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK-------QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPE 75 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHHC--------CCCC-------GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCB
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccC-------CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcC
Confidence 3467778888888866543211 11111111 1345665555556667777777887765543 22
Q ss_pred ------CeEeEEe-ecccCCCeEEEEEcc---CCCEEEEEECCCeEEEEeCCCCc-------eEEEeeccccceeEEEEc
Q psy8448 182 ------GQCLRKL-EKAHSLGVTCIQFSR---DNSQILTASFDTYVRIHGLKSGK-------MLKEFRGHSSFVNDITFT 244 (482)
Q Consensus 182 ------~~~~~~~-~~~~~~~v~~i~~~~---~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~i~~l~~~ 244 (482)
|..+..+ .......|..+..-+ +..+++..+.+|.++-..+.... ....++. .+.+..+...
T Consensus 76 ~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~ 154 (327)
T 3uc1_A 76 ASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLC 154 (327)
T ss_dssp CCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEE
T ss_pred CCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEe
Confidence 2222111 112344566554433 47799999999999998765422 1223333 3445555555
Q ss_pred CCCCEEEEEeCCCcEEEEECC--CCce-------eeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC----
Q psy8448 245 ADGHSVLSASSDGTVKMWNLK--TTEC-------TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ---- 311 (482)
Q Consensus 245 ~~~~~l~~~~~dg~i~i~d~~--~~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~---- 311 (482)
.....|+..+..|.+..+... .-.. +..+. + .....|.++...+.+ ..++..+..|.++.-.+.
T Consensus 155 ~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~-L-~~~d~Vv~~~~~~~~-~~ll~~T~~G~~Krt~l~e~~~ 231 (327)
T 3uc1_A 155 SAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMR-F-NIDDRLLSLNVVREG-TYLLVATSGGYAKRTAIEEYPV 231 (327)
T ss_dssp CTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSC-C-CTTCCEEEEEECCTT-CEEEEEETTSEEEEEEGGGSCB
T ss_pred cCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeec-C-CCCCEEEEEEEECCC-CEEEEEeCCCcEEEEEHHHccc
Confidence 556778889999998888776 3111 11111 1 234456666665554 678888999998887752
Q ss_pred ----CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448 312 ----GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ 355 (482)
Q Consensus 312 ----~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~ 355 (482)
++-+..+..... ...+..+....+...++..+.+|.+.-+...
T Consensus 232 ~~R~~~G~~~~~l~~~-~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 232 QGRGGKGVLTVMYDRR-RGRLVGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp CCTTSCCEESSCCCTT-TCSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred cCcCCCcEEEEEecCC-CCeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 122222221110 2345555444455677777888877745443
No 355
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=90.84 E-value=8.1 Score=34.05 Aligned_cols=238 Identities=13% Similarity=0.107 Sum_probs=128.0
Q ss_pred CCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcC---C-----
Q psy8448 110 PDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIA---T----- 181 (482)
Q Consensus 110 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~---~----- 181 (482)
|+..++++.+.+|.|+--.+..-+.... ....+.. .+.+..+........|+..+..|.+.-+... .
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~----~~~~lke-~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a 77 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNG----QDFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKD 77 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTT----CCCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTS
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCc----cccccCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCC
Confidence 5667888899999998765442111000 0001111 2455555555566678888888887766542 1
Q ss_pred -CeEeEEe-ecccCCCeEEEEEcc---CCCEEEEEECCCeEEEEeCCCC--------ceEEEeeccccceeEEEEcCCCC
Q psy8448 182 -GQCLRKL-EKAHSLGVTCIQFSR---DNSQILTASFDTYVRIHGLKSG--------KMLKEFRGHSSFVNDITFTADGH 248 (482)
Q Consensus 182 -~~~~~~~-~~~~~~~v~~i~~~~---~~~~l~~~~~dg~i~i~d~~~~--------~~~~~~~~~~~~i~~l~~~~~~~ 248 (482)
|..+..+ .......|..+..-+ ++.+++.++.+|.++...+... .....+.. .+.+..+.......
T Consensus 78 ~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~ 156 (323)
T 1wp5_A 78 LGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMN 156 (323)
T ss_dssp CCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCS
T ss_pred CCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCC
Confidence 2221111 112334465543333 2568999999999999877422 11122332 24555555555566
Q ss_pred EEEEEeCCCcEEEEECCCCce-------eeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC--------Cc
Q psy8448 249 SVLSASSDGTVKMWNLKTTEC-------TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ--------GQ 313 (482)
Q Consensus 249 ~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~--------~~ 313 (482)
.++..+.+|.+..+....-.. +..+. + .....|.++...+++...+++.+..|..+..++. ++
T Consensus 157 ~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~-L-~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~k 234 (323)
T 1wp5_A 157 ELFLVTHNGYALWFDESEVSIVGVRAAGVKGMN-L-KEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKR 234 (323)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCSSCCCEECCC-C-CTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSC
T ss_pred EEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEE-e-CCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCC
Confidence 788899999988887643211 11111 1 2234566665544442268888888888777662 12
Q ss_pred EEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448 314 IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ 355 (482)
Q Consensus 314 ~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~ 355 (482)
-+..+.........+..+....++..++..+.+|.+.-..+.
T Consensus 235 Gv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~ 276 (323)
T 1wp5_A 235 GVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVG 276 (323)
T ss_dssp CEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred CEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhh
Confidence 222232111112245543333344566677777776644443
No 356
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=90.71 E-value=9.1 Score=34.45 Aligned_cols=237 Identities=14% Similarity=0.118 Sum_probs=129.6
Q ss_pred EcCCCCEEEEEeCCCeEEEEecCCCc-------eeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q psy8448 108 FSPDGQYLITGSVDGFIEVWNFTTGK-------IRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIA 180 (482)
Q Consensus 108 ~s~~~~~l~s~~~dg~v~iwd~~~~~-------~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~ 180 (482)
+-|+..++++.+.+|.|+--.+..-+ ....+... ..+.+..+........|+..+..|.+.-+...
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-------e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~ 75 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-------EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVH 75 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-------CCCCEEEEEEECTTCEEEEEETTSEEEEEEGG
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-------CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHH
Confidence 34677899999999999976543211 11111111 13456666666666778878888887766532
Q ss_pred ---C------CeEeEEe-ecccCCCeEEEEEcc---CCCEEEEEECCCeEEEEeCCCCc-------eEEEeeccccceeE
Q psy8448 181 ---T------GQCLRKL-EKAHSLGVTCIQFSR---DNSQILTASFDTYVRIHGLKSGK-------MLKEFRGHSSFVND 240 (482)
Q Consensus 181 ---~------~~~~~~~-~~~~~~~v~~i~~~~---~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~i~~ 240 (482)
. |..+..+ .......|.++..-. ++.+|+.++..|.++...+.... ....+.. .+.+..
T Consensus 76 eip~~~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~ 154 (370)
T 3l6v_A 76 QLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVG 154 (370)
T ss_dssp GSCBCCTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEE
T ss_pred HCcCCCcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEE
Confidence 1 2222111 112344566554432 45689999999999988764322 2222332 344545
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCce-------eeeeeccCCCccceeEEEEcCC----------------------
Q psy8448 241 ITFTADGHSVLSASSDGTVKMWNLKTTEC-------TSTFKSLGASDIAVNSIHLLPK---------------------- 291 (482)
Q Consensus 241 l~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~~~v~~i~~~~~---------------------- 291 (482)
+........++..+.+|.+..++...-.. +.-+. + .....|.++...+.
T Consensus 155 v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~-L-~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g 232 (370)
T 3l6v_A 155 VALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIR-L-AKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDG 232 (370)
T ss_dssp EEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCC-C-CTTCCEEEEEEECCC---------------------
T ss_pred EEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEE-e-CCCCEEEEEEEecccccccccccccccccccccccc
Confidence 55545556788888899888887543111 11111 1 22344555544431
Q ss_pred ------------CCCEEEEEeCCCeEEEEEcC--------CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEE
Q psy8448 292 ------------NTEHFVVCNKTNTVVIMNMQ--------GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVV 351 (482)
Q Consensus 292 ------------~~~~l~~~~~d~~i~i~d~~--------~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~i 351 (482)
....+++.+..|..+...+. ++-+..+.... ..+.+..+.+..+...++..+..|.+.-
T Consensus 233 ~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~-~~g~lv~~~~v~~~d~i~liT~~G~~iR 311 (370)
T 3l6v_A 233 AEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTE-RNGKLVRAVLLGSTDEVMLISDGGTLVR 311 (370)
T ss_dssp --------------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCT-TTCSEEEEEEECTTCEEEEEETTCCEEE
T ss_pred ccccccccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecC-CCCcEEEEEEeCCCceEEEEcCCCeEEE
Confidence 22578888889988887762 12233332211 1345555444445556666677776663
Q ss_pred Eeeh
Q psy8448 352 RLIQ 355 (482)
Q Consensus 352 w~~~ 355 (482)
....
T Consensus 312 ~~v~ 315 (370)
T 3l6v_A 312 TRGS 315 (370)
T ss_dssp EEGG
T ss_pred eeHh
Confidence 3333
No 357
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=89.79 E-value=9.8 Score=33.35 Aligned_cols=236 Identities=11% Similarity=0.104 Sum_probs=126.8
Q ss_pred CCCCEEEEEeCCCeEEEEecCCCceeeccc-cccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEe---
Q psy8448 110 PDGQYLITGSVDGFIEVWNFTTGKIRKDLK-YQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCL--- 185 (482)
Q Consensus 110 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--- 185 (482)
++..++++.+.+|.|+--.+..-+....-. ......+.. .+.+..+........++..+..|.++-+....-...
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 466788899999999987665332111000 000000111 244555555556667888888998877765321100
Q ss_pred E-------EeecccCCCeEEEEEcc---CCCEEEEEECCCeEEEEeCCCC-------ceEEEeeccccceeEEEEcCCCC
Q psy8448 186 R-------KLEKAHSLGVTCIQFSR---DNSQILTASFDTYVRIHGLKSG-------KMLKEFRGHSSFVNDITFTADGH 248 (482)
Q Consensus 186 ~-------~~~~~~~~~v~~i~~~~---~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~i~~l~~~~~~~ 248 (482)
. .+.......|..+...+ ++.+++..+.+|.++...+... .....+.. .+.+..+....++.
T Consensus 85 ~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~ 163 (312)
T 1suu_A 85 SKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDE 163 (312)
T ss_dssp ---CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTC
T ss_pred CCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCC
Confidence 0 01111234455554333 4678889999999998877432 22223333 45565555555566
Q ss_pred EEEEEeCCCcEEEEECCCCce-------eeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC--------Cc
Q psy8448 249 SVLSASSDGTVKMWNLKTTEC-------TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ--------GQ 313 (482)
Q Consensus 249 ~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~--------~~ 313 (482)
.++..+.+|.+..+....-.. +..+. + .....|..+....++ ..+++.+..|..+..++. ++
T Consensus 164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~-L-~~~d~vv~~~~v~~~-~~l~~vt~~G~~kr~~~~e~~~~~R~~k 240 (312)
T 1suu_A 164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMK-L-KEGDLFVKVLSVKEN-PYLLIVSENGYGKRLNMSKISELKRGAT 240 (312)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCC-C-CTTCCEEEEEECTTC-SEEEEEETTSEEEEEEGGGSCBCCTTCC
T ss_pred EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEE-e-CCCCEEEEEEEECCC-CeEEEEECCCceEEEEHHHhcccCCCCC
Confidence 788899999999988754111 11111 1 123455566555444 567888888988888772 12
Q ss_pred EEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448 314 IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLV 350 (482)
Q Consensus 314 ~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~ 350 (482)
-+..+.........+..+..-.+...+...+..|.+.
T Consensus 241 Gv~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~ 277 (312)
T 1suu_A 241 GYTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKAL 277 (312)
T ss_dssp CEECSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEE
T ss_pred CEEeeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEE
Confidence 2222221111133444433333455666667777544
No 358
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=89.12 E-value=11 Score=35.15 Aligned_cols=111 Identities=14% Similarity=0.118 Sum_probs=62.8
Q ss_pred cceeEEEEcCCCC-EEEEEeCCCcEEEEECCCCc---eeeeeeccC------CCccceeEEEEcCC---CCCEEEEEeCC
Q psy8448 236 SFVNDITFTADGH-SVLSASSDGTVKMWNLKTTE---CTSTFKSLG------ASDIAVNSIHLLPK---NTEHFVVCNKT 302 (482)
Q Consensus 236 ~~i~~l~~~~~~~-~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~------~~~~~v~~i~~~~~---~~~~l~~~~~d 302 (482)
.....|+|.|++. .|+++...|.|++++..... .+..+.... ........|+++|+ +..++++-+.+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3467999999986 56667788999999754321 111111100 11456789999996 22445443321
Q ss_pred ------------CeEEEEEcCC-----------cEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCc
Q psy8448 303 ------------NTVVIMNMQG-----------QIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDM 347 (482)
Q Consensus 303 ------------~~i~i~d~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg 347 (482)
..|.-|.+.. +.+..+... .....-..++|.|||.+.++.++.+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~-~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAEL-HRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEES-SSSSCEEEEEECTTSCEEEEECCTT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCC-CCcccCCcEeECCCCcEEEEeCCCC
Confidence 1344455421 223333211 1123457899999998777766544
No 359
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=88.72 E-value=12 Score=32.99 Aligned_cols=166 Identities=10% Similarity=0.104 Sum_probs=97.8
Q ss_pred CCCcEEEEEEcC---CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEE
Q psy8448 99 SKSHVECARFSP---DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVK 175 (482)
Q Consensus 99 h~~~v~~~~~s~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~ 175 (482)
....|.++..-+ +..+++..+.+|.++--.+..-..... .......+.. .+.+..+........|+..+..|.+.
T Consensus 93 ~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r-~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~ 170 (327)
T 3uc1_A 93 PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRS-GGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSI 170 (327)
T ss_dssp TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCS-SCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEE
T ss_pred CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhcccc-CceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEE
Confidence 445666654433 578999999999999988764322111 0000011111 24555555555666788888999988
Q ss_pred EEEcC--CCe-------EeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCc-------eEEEe--eccccc
Q psy8448 176 IWKIA--TGQ-------CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGK-------MLKEF--RGHSSF 237 (482)
Q Consensus 176 iwd~~--~~~-------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~--~~~~~~ 237 (482)
.+... .-. -...+.......|.++...+++..++.++..|.++.-.+.... -+..+ ....+.
T Consensus 171 rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~ 250 (327)
T 3uc1_A 171 RFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGR 250 (327)
T ss_dssp EEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCS
T ss_pred EEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCe
Confidence 88766 211 1111212244567777766667789999999999888764322 12222 221334
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy8448 238 VNDITFTADGHSVLSASSDGTVKMWNLKT 266 (482)
Q Consensus 238 i~~l~~~~~~~~l~~~~~dg~i~i~d~~~ 266 (482)
+..+....+...++..+.+|.+..++...
T Consensus 251 lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 251 LVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred EEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 44444444455677778888888787643
No 360
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=88.35 E-value=12 Score=32.30 Aligned_cols=180 Identities=16% Similarity=0.039 Sum_probs=95.2
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEE
Q psy8448 151 EAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKE 230 (482)
Q Consensus 151 ~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 230 (482)
..|..++.... ..+.-. ||.|..|-......+.. .......|..++...+. .++. . ||.|+.|-....-.+..
T Consensus 24 ~~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~-p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~ 96 (282)
T 3qhy_B 24 SGVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTM-PAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTV 96 (282)
T ss_dssp SSCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSC-CGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCC
T ss_pred CCCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCC-CccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCC
Confidence 35777766543 223334 89999997544322211 11223457777765433 2333 5 89999997654221111
Q ss_pred eeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEE
Q psy8448 231 FRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKT-TECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMN 309 (482)
Q Consensus 231 ~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d 309 (482)
-..-...|..++...+ ..+.-. +|.|..|-... ++.-... .....|..++.-. ...++-. +|.+..|-
T Consensus 97 P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~----~~~~~i~~i~~G~---~~~~~l~-~G~v~~wG 165 (282)
T 3qhy_B 97 PAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPA----EAQSGVTALDGGV---YTALAVK-NGGVIAWG 165 (282)
T ss_dssp CGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCG----GGGSSEEEEEECS---SEEEEEE-TTEEEEEE
T ss_pred CcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCc----cCCCCeEEEEccc---CEEEEEE-CCEEEEec
Confidence 1112345777776543 334445 89999997654 2221111 2234566666544 3333344 79999997
Q ss_pred cC--CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448 310 MQ--GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ 355 (482)
Q Consensus 310 ~~--~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~ 355 (482)
.. ++.- ........|..++...+ +.++- .||.++.|=..
T Consensus 166 ~n~~gqlg----~p~~~~~~v~~i~~G~~--hs~al-~~G~v~~wG~n 206 (282)
T 3qhy_B 166 DNYFGQTT----VPAEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGDN 206 (282)
T ss_dssp CCTTSTTS----CCGGGGSSEEEEEECSS--EEEEE-ETTEEEEEECC
T ss_pred CCCCCCCC----CceecCCCeEEEEecCC--EEEEE-ECCeEEEEECC
Confidence 73 3321 11111346777776544 33333 59999977443
No 361
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=87.87 E-value=12 Score=32.03 Aligned_cols=191 Identities=13% Similarity=0.083 Sum_probs=111.4
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEE---cCCCeEeEEeecccCCCeEEEEEcc-CCCEEEEEECCCeEEEEeCCCCc
Q psy8448 151 EAVMSLAYSRDSEMLASGSQSGKVKIWK---IATGQCLRKLEKAHSLGVTCIQFSR-DNSQILTASFDTYVRIHGLKSGK 226 (482)
Q Consensus 151 ~~i~~l~~~~~~~~l~~~~~dg~i~iwd---~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~ 226 (482)
+.+..+.-.....+|+.-+.+|.++-.. +....... + ......|..+.... +..+++..+.+|.++-..+....
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-l-l~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~ 101 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-L-KSREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE 101 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-C-SSTTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-c-CCCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence 4565555555556777777888776543 32222111 2 23455676665422 56789999999999998875432
Q ss_pred ------eEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCce-------eeeeeccCCCccceeEEEEcCCCC
Q psy8448 227 ------MLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTEC-------TSTFKSLGASDIAVNSIHLLPKNT 293 (482)
Q Consensus 227 ------~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~~~v~~i~~~~~~~ 293 (482)
....++ ..+.+..+........++..+..|.+..+....-.. +..+. + ..+..|..+...+++
T Consensus 102 ~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~-L-~~~d~vv~~~~~~~~- 177 (276)
T 3no0_A 102 YKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIK-L-EKNDETSGLRIWNGE- 177 (276)
T ss_dssp TCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCC-C-CTTCCEEEEEEESSC-
T ss_pred hhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEc-c-CCCCEEEEEEEeCCC-
Confidence 112233 234555555555667888899999988887543111 11111 1 223455555555544
Q ss_pred CEEEEEeCCCeEEEEEcC--------CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEE
Q psy8448 294 EHFVVCNKTNTVVIMNMQ--------GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVV 351 (482)
Q Consensus 294 ~~l~~~~~d~~i~i~d~~--------~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~i 351 (482)
..++..+..|.++...+. ++-+..+. ....+..+....+...++..+.+|.+..
T Consensus 178 ~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~----~~~~lv~~~~~~~~~~i~~~t~~G~~ir 239 (276)
T 3no0_A 178 PYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSG----TKDTLVDLIPIKEEVELLITTKNGKAFY 239 (276)
T ss_dssp SEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCC----SSSCEEEEEEESSEEEEEEEETTSCEEE
T ss_pred CEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEc----CCCcEEEEEEeCCCCEEEEEcCCCeEEE
Confidence 678888899988887762 22233331 1344555544344456777788888774
No 362
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=87.29 E-value=14 Score=32.19 Aligned_cols=237 Identities=13% Similarity=0.118 Sum_probs=124.2
Q ss_pred CCCCEEEEEeCCCeEEEEecCCCceeeccc-cccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcC---C----
Q psy8448 110 PDGQYLITGSVDGFIEVWNFTTGKIRKDLK-YQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIA---T---- 181 (482)
Q Consensus 110 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~---~---- 181 (482)
|+..++++.+.+|.|+--.+.+-+....-. ......+.. .+.+..+........|+..+..|.+.-+... .
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 456678888999999877665422211100 000000111 2445555555556677777888887666542 1
Q ss_pred --CeEeEEe-ecccCCCeEEEEEc---cCCCEEEEEECCCeEEEEeCCCC-------ceEEEeeccccceeEEEEcCCCC
Q psy8448 182 --GQCLRKL-EKAHSLGVTCIQFS---RDNSQILTASFDTYVRIHGLKSG-------KMLKEFRGHSSFVNDITFTADGH 248 (482)
Q Consensus 182 --~~~~~~~-~~~~~~~v~~i~~~---~~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~i~~l~~~~~~~ 248 (482)
|..+..+ .......|..+..- .++.+++..+.+|.++-..+... .....+... +.+..+....+..
T Consensus 80 a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~ 158 (307)
T 1zi0_A 80 ARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGED 158 (307)
T ss_dssp SCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTC
T ss_pred CCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCC
Confidence 2221111 11234456655442 34567999999999999876421 111223333 4555555545556
Q ss_pred EEEEEeCCCcEEEEECCCCce-------eeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCC--------c
Q psy8448 249 SVLSASSDGTVKMWNLKTTEC-------TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQG--------Q 313 (482)
Q Consensus 249 ~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~--------~ 313 (482)
.++..+.+|.+..++...-.. +..+. + .....|.++...+++ ..+++.+..|..+-.++.. +
T Consensus 159 ~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~-L-~~~d~Vv~~~~~~~~-~~ll~~T~~G~~Kr~~~~e~~~~~Rg~k 235 (307)
T 1zi0_A 159 EVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIR-L-GEGDKVVSLIVPRGD-GAILTATQNGYGKRTAVAEYPTKSRATK 235 (307)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCC-C-CTTCCEEEEECCCSS-CEEEEEETTSEEEEECGGGSCCCCTTSC
T ss_pred EEEEECCCCcEEEEEHHHcCccCCCCCCeEeEE-e-CCCCEEEEEEEecCC-CEEEEEEcCCceEEEEHHHhccCCCCCC
Confidence 788888999988887643211 11111 1 233456666555444 5688888888888877621 1
Q ss_pred EEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEE
Q psy8448 314 IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVR 352 (482)
Q Consensus 314 ~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw 352 (482)
-...+... .....+..+....+...++..+.+|.+.-.
T Consensus 236 G~~~~~~~-~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~ 273 (307)
T 1zi0_A 236 GVISIKVT-ERNGLVVGAVQVDDCDQIMMITDAGTLVRT 273 (307)
T ss_dssp CEESSCCC-TTTCSEEEEEEECTTCEEEEEESSCCEEEE
T ss_pred CEEeeEec-CCCCeEEEEEEeCCCceEEEEcCCCcEEEE
Confidence 12122111 113455554443444556677777776633
No 363
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=86.28 E-value=15 Score=31.45 Aligned_cols=165 Identities=13% Similarity=0.112 Sum_probs=97.6
Q ss_pred CCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEE
Q psy8448 98 GSKSHVECARFSP-DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKI 176 (482)
Q Consensus 98 ~h~~~v~~~~~s~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~i 176 (482)
.....|..+.... +..+++..+.+|.++-..+..-. ... .......+.. .+.+..+........++..+..|.+..
T Consensus 65 ~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~-~~~-~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r 141 (276)
T 3no0_A 65 SREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE-YKA-QGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVAR 141 (276)
T ss_dssp STTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT-TCS-TTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEE
T ss_pred CCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh-hhc-CCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEE
Confidence 4466677765422 56789999999999999876532 110 0000011111 345666666666668888899999888
Q ss_pred EEcCCC-------eEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCC-------ceEEEeeccccceeEEE
Q psy8448 177 WKIATG-------QCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSG-------KMLKEFRGHSSFVNDIT 242 (482)
Q Consensus 177 wd~~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~i~~l~ 242 (482)
++...- .-...+.......|..+...+++..++..+..|.++...+... +-+..+ ...+.+..+.
T Consensus 142 ~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~ 220 (276)
T 3no0_A 142 FSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLI 220 (276)
T ss_dssp EEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEE
T ss_pred EEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEE
Confidence 875321 1111121223455666665566678999999999988876432 222233 2334454444
Q ss_pred EcCCCCEEEEEeCCCcEEE--EECCC
Q psy8448 243 FTADGHSVLSASSDGTVKM--WNLKT 266 (482)
Q Consensus 243 ~~~~~~~l~~~~~dg~i~i--~d~~~ 266 (482)
...+...++..+.+|.+.. ++...
T Consensus 221 ~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 221 PIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 3334456777788888877 77543
No 364
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=82.66 E-value=24 Score=30.83 Aligned_cols=192 Identities=13% Similarity=0.126 Sum_probs=110.3
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeE-------eEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCC---CC----
Q psy8448 160 RDSEMLASGSQSGKVKIWKIATGQC-------LRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLK---SG---- 225 (482)
Q Consensus 160 ~~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~---~~---- 225 (482)
++..++++.+.+|.|+-..+..-+. ...+.......+..+........++..+..|.++-+... ..
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 4667889999999999887643321 111111233445555555566678888889987766543 21
Q ss_pred --ce---EEEeeccccceeEEEEcC---CCCEEEEEeCCCcEEEEECCCCce-----eeeeeccCCCccceeEEEEcCCC
Q psy8448 226 --KM---LKEFRGHSSFVNDITFTA---DGHSVLSASSDGTVKMWNLKTTEC-----TSTFKSLGASDIAVNSIHLLPKN 292 (482)
Q Consensus 226 --~~---~~~~~~~~~~i~~l~~~~---~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~~~~v~~i~~~~~~ 292 (482)
.+ ...+. ....|.++...+ +..+++..+..|.++...+..... ...+. +.. ...+..+.....+
T Consensus 86 ~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~-L~~-~d~lv~~~~~~~~ 162 (312)
T 1suu_A 86 KGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIK-LND-KDFVTSAEIVFKD 162 (312)
T ss_dssp --CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBC-CCT-TCCEEEEEEECTT
T ss_pred CCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEe-cCC-CCEEEEEEEeCCC
Confidence 11 01122 233454444332 467788899999999887743211 11111 112 4455555554433
Q ss_pred CCEEEEEeCCCeEEEEEcCC-----c---EEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhh
Q psy8448 293 TEHFVVCNKTNTVVIMNMQG-----Q---IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQY 357 (482)
Q Consensus 293 ~~~l~~~~~d~~i~i~d~~~-----~---~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~ 357 (482)
..++..+.+|.+..+.... + -+..+.-. ....+..+..-+++..|++.+..|......+.++
T Consensus 163 -~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~--~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 163 -EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK--EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp -CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC--TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred -CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC--CCCEEEEEEEECCCCeEEEEECCCceEEEEHHHh
Confidence 6788888899888887631 1 12222111 1445666666556778889999999886665543
No 365
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=81.87 E-value=31 Score=35.77 Aligned_cols=38 Identities=21% Similarity=0.416 Sum_probs=33.4
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEe
Q psy8448 151 EAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKL 188 (482)
Q Consensus 151 ~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 188 (482)
..+.+++..++..++++-+.|+++++|++.+++++...
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 35778888888889999999999999999999988765
No 366
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=76.49 E-value=64 Score=32.07 Aligned_cols=243 Identities=10% Similarity=0.059 Sum_probs=120.3
Q ss_pred cEEEEE-EcCCCCEEEEEe-----CCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe------
Q psy8448 102 HVECAR-FSPDGQYLITGS-----VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS------ 169 (482)
Q Consensus 102 ~v~~~~-~s~~~~~l~s~~-----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~------ 169 (482)
....+. ++|++++++.+- .-..++++|+.+++.+..-.......-.--......++|..+. .++.+.
T Consensus 130 ~~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~-~~~~~~~~~~~~ 208 (711)
T 4hvt_A 130 AYRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKD-TIIFNLVLHKNE 208 (711)
T ss_dssp EEEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETT-EEEECCCCSTTC
T ss_pred EEeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCC-EEEEEeCCCCCC
Confidence 344555 899999887652 2237999999999876421111000000000012344676333 344332
Q ss_pred -----CCCcEEEEEcCCCe--EeEEeecccCCCeEEEEEccCCCE-----EEEEE---CCCeEEEEeCCC--CceEEEee
Q psy8448 170 -----QSGKVKIWKIATGQ--CLRKLEKAHSLGVTCIQFSRDNSQ-----ILTAS---FDTYVRIHGLKS--GKMLKEFR 232 (482)
Q Consensus 170 -----~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~-----l~~~~---~dg~i~i~d~~~--~~~~~~~~ 232 (482)
....|+.|.+-+.. -...+......--.....++++++ +++.+ ....+.+.|... ++ ...+.
T Consensus 209 ~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~ 287 (711)
T 4hvt_A 209 ITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKIN 287 (711)
T ss_dssp BCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECC
T ss_pred cCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEee
Confidence 22468888875542 222332222222334445666652 44433 224567777653 33 22332
Q ss_pred ccccceeEEEEcCCCCEEEEE----------eCCCcEEEEECCCCc-------eeee-eeccCCCccceeEEEEcCCCCC
Q psy8448 233 GHSSFVNDITFTADGHSVLSA----------SSDGTVKMWNLKTTE-------CTST-FKSLGASDIAVNSIHLLPKNTE 294 (482)
Q Consensus 233 ~~~~~i~~l~~~~~~~~l~~~----------~~dg~i~i~d~~~~~-------~~~~-~~~~~~~~~~v~~i~~~~~~~~ 294 (482)
..... .+....++.+++.. ...+.|...|+.++. .... +. ......+..+.+..+ .
T Consensus 288 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~--~ 361 (711)
T 4hvt_A 288 MPSDA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFT--PTANEVFNFISTTKD--R 361 (711)
T ss_dssp SCTTC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEEC--CCTTEEEEEEEECSS--C
T ss_pred cCCcc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEEC--CCCCCeEEEEEEECC--E
Confidence 22221 12334455544422 246779999987642 1122 21 134556788888875 5
Q ss_pred EEEEEeCCCe--EEEEEc-CCc-EEEE-ecCCcccCcCEEEEEEcCCCCEEE-EEeC---CcEEEEEee
Q psy8448 295 HFVVCNKTNT--VVIMNM-QGQ-IVRS-LSSGKREGGDFLCCTTSPRGEWIY-CVGE---DMVLVVRLI 354 (482)
Q Consensus 295 ~l~~~~~d~~--i~i~d~-~~~-~~~~-~~~~~~~~~~v~~~~~~~~g~~l~-~~~~---dg~i~iw~~ 354 (482)
++++...++. +.++++ .+. .... +.... .+.+.....++++..++ +.+. -+.++.++.
T Consensus 362 l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~--~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~ 428 (711)
T 4hvt_A 362 VFLATYDNVVAKVVTFTLENEQWTKPVVLKLPY--QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVK 428 (711)
T ss_dssp EEEEEEETTEEEEEEECEETTEECCCEEECCCS--TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred EEEEEEECCEEEEEEEECCCCceEEEeccCCCC--CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeC
Confidence 7777777764 566776 343 1222 22111 23466666667765444 3332 355666554
No 367
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=74.39 E-value=77 Score=31.99 Aligned_cols=243 Identities=9% Similarity=0.009 Sum_probs=113.7
Q ss_pred CCcEEEEEEcCC-CCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCC-CCEEEEEeCCCc----
Q psy8448 100 KSHVECARFSPD-GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRD-SEMLASGSQSGK---- 173 (482)
Q Consensus 100 ~~~v~~~~~s~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~-~~~l~~~~~dg~---- 173 (482)
...|.+|+++|. ...+.+++..+.|...+ +.|+.-..+....... .-....+.++++.|. .+.++++..+..
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~-~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~ 91 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQ-DMNIMGTESIALDPNNPDRLYLAQGRYVGDEW 91 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGG-GGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcc-cccCCceeEEEECCCCCCEEEEEeCccCCCcc
Confidence 458999999994 45666676666665554 3333222221110000 001246999999984 344555443211
Q ss_pred EEEEEc-CCCeEeEEeeccc--------CCCeEEEEEccC-CCEEEEEECCCeEEEEeCCCCceEEEeec------cccc
Q psy8448 174 VKIWKI-ATGQCLRKLEKAH--------SLGVTCIQFSRD-NSQILTASFDTYVRIHGLKSGKMLKEFRG------HSSF 237 (482)
Q Consensus 174 i~iwd~-~~~~~~~~~~~~~--------~~~v~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~ 237 (482)
-.||.- ..++.-..+.... ...+..++++|. ...++.+...+.|.. ..+.++.-..+.. ....
T Consensus 92 ~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~~~ 170 (789)
T 1sqj_A 92 AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNGIG 170 (789)
T ss_dssp CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTTTC
T ss_pred cEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCCCC
Confidence 334433 3343333321110 113566888874 345556553444332 2233433222221 1245
Q ss_pred eeEEEEcCC-CCEEEEEeCC-CcEEEEECCCCceeeeeeccCCCc---------------cceeEEEEcCCCCCEEEEE-
Q psy8448 238 VNDITFTAD-GHSVLSASSD-GTVKMWNLKTTECTSTFKSLGASD---------------IAVNSIHLLPKNTEHFVVC- 299 (482)
Q Consensus 238 i~~l~~~~~-~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~---------------~~v~~i~~~~~~~~~l~~~- 299 (482)
+..+.++|. +..++++..+ +.|. ...+.++.-..+....... .....+.+.|....++++.
T Consensus 171 ~~~i~~~p~~~~~~~~~~~~~~~v~-~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~ 249 (789)
T 1sqj_A 171 YTSVIFDPERNGTIYASATAPQGMY-VTHDGGVSWEPVAGQPSSWLNRTTGAFPDKKPASIAPQPMKVALTPNFLYVTYA 249 (789)
T ss_dssp EEEEEECTTSTTCEEEEESSTTCEE-EESSTTSSCEECTTCCCSCCHHHHHTSTTCCCSSSSCEEEEEEECSSEEEEEEE
T ss_pred eEEEEECCCCCCEEEEEEcCCCeEE-EEcCCCcCcccCCCCcCccccccccccCcccccccccceeEEcCCCCeEEEEEe
Confidence 788899884 4456666654 3332 2333343222221100000 1126677777532344442
Q ss_pred -------eCCCeEEEEEcCCcEEEEecCCccc---------Cc---CEEEEEEcCC-CCEEEEEeCC
Q psy8448 300 -------NKTNTVVIMNMQGQIVRSLSSGKRE---------GG---DFLCCTTSPR-GEWIYCVGED 346 (482)
Q Consensus 300 -------~~d~~i~i~d~~~~~~~~~~~~~~~---------~~---~v~~~~~~~~-g~~l~~~~~d 346 (482)
+..+.|...+-.++....+...... .. .+..++++|. ...|+++..+
T Consensus 250 ~~~~p~~g~~g~l~~S~DgG~tW~~~~~~~~~~~p~~~~~~~~~~~g~~~lav~p~~~~~v~~~~~~ 316 (789)
T 1sqj_A 250 DYPGPWGVTFGEVWRQNRTSGAWDDITPRVGNSSPAPYNNQTFPAGGFCGLSVDATNPNRLVVITLD 316 (789)
T ss_dssp SSCSSSCCCCCCEEEEETTTCCEEECCCCTTTEESCCCSSCCSCCCEEEEEEEETTEEEEEEEEEEC
T ss_pred cCCCCCCCCCceEEEEeCCCCceEECcCCCCccccccccccccccCceEEEEECCCCCCEEEEEEec
Confidence 2455555555455554444321110 01 3468888875 3456655543
No 368
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=67.62 E-value=69 Score=28.71 Aligned_cols=149 Identities=15% Similarity=0.134 Sum_probs=86.6
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCC-------CeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEe---CCC---
Q psy8448 158 YSRDSEMLASGSQSGKVKIWKIAT-------GQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHG---LKS--- 224 (482)
Q Consensus 158 ~~~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d---~~~--- 224 (482)
+-|+..++++.+.+|.|+--.+.+ ++-...+.......+..+........|+..+..|.++-+. +..
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 346778999999999999876532 1122222223455666666665667788888888776654 322
Q ss_pred ---CceEEE---eeccccceeEEEEcC---CCCEEEEEeCCCcEEEEECCCCce-----eeeeeccCCCccceeEEEEcC
Q psy8448 225 ---GKMLKE---FRGHSSFVNDITFTA---DGHSVLSASSDGTVKMWNLKTTEC-----TSTFKSLGASDIAVNSIHLLP 290 (482)
Q Consensus 225 ---~~~~~~---~~~~~~~i~~l~~~~---~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~~~~v~~i~~~~ 290 (482)
|.++.. +. ....|.++.... ++.+|+.++..|.++.-.+..... +..+. +.. ...+..+....
T Consensus 83 ~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~-L~~-~d~lv~v~~~~ 159 (370)
T 3l6v_A 83 NARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAIN-LDE-GDALVGVALTD 159 (370)
T ss_dssp TSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSC-CCT-TCCEEEEEEEC
T ss_pred ccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEE-eCC-CCEEEEEEEeC
Confidence 222211 22 234455554332 456899999999999887643221 11111 112 33444444444
Q ss_pred CCCCEEEEEeCCCeEEEEEc
Q psy8448 291 KNTEHFVVCNKTNTVVIMNM 310 (482)
Q Consensus 291 ~~~~~l~~~~~d~~i~i~d~ 310 (482)
.. ..++..+..|.+..++.
T Consensus 160 ~~-~~i~l~T~~G~~irf~~ 178 (370)
T 3l6v_A 160 GD-RDVLLFASNGKTVRFGE 178 (370)
T ss_dssp SC-CEEEEEETTSEEEEEEG
T ss_pred CC-ceEEEEeCCCeEEEEEc
Confidence 33 56777888888777765
No 369
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=65.89 E-value=20 Score=34.60 Aligned_cols=60 Identities=22% Similarity=0.239 Sum_probs=41.7
Q ss_pred cEEEEEEcCCCCEEEEEeCC------------CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEE
Q psy8448 102 HVECARFSPDGQYLITGSVD------------GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASG 168 (482)
Q Consensus 102 ~v~~~~~s~~~~~l~s~~~d------------g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~ 168 (482)
..--|+|+|.|++++.-..+ ..+.+.+..+++....+..+. ..+++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~-------gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI-------GCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCT-------TCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCC-------CccCcCeeECCCCCEEEEE
Confidence 45678999999876654322 246666766777655444332 4789999999999887765
No 370
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=65.83 E-value=85 Score=33.30 Aligned_cols=37 Identities=11% Similarity=0.275 Sum_probs=30.9
Q ss_pred eEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEee
Q psy8448 196 VTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFR 232 (482)
Q Consensus 196 v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 232 (482)
+.+++..++..++++-+.|+++++|++.+++++.+..
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 4455666778899999999999999999999987754
No 371
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=65.36 E-value=1.4e+02 Score=31.56 Aligned_cols=38 Identities=21% Similarity=0.341 Sum_probs=31.8
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeee
Q psy8448 237 FVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFK 274 (482)
Q Consensus 237 ~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 274 (482)
.+.+++..++..++++-+.|+++++|++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 34556667788999999999999999999999887754
No 372
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=62.68 E-value=27 Score=33.70 Aligned_cols=60 Identities=18% Similarity=0.209 Sum_probs=42.6
Q ss_pred cEEEEEEcCCCCEEEEEeCC------------CcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEE
Q psy8448 152 AVMSLAYSRDSEMLASGSQS------------GKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTA 211 (482)
Q Consensus 152 ~i~~l~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 211 (482)
..-.|+|+|.|++++.-..+ ..+.+.+..+++..+-+.......++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 45678999999866554322 2356667677776666655566789999999999887765
No 373
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=62.11 E-value=90 Score=28.09 Aligned_cols=137 Identities=9% Similarity=0.037 Sum_probs=72.5
Q ss_pred eEEEEeCCCC--ceEEEeec------cccceeEEEEc---CC----CCEEEEEe-CCCcEEEEECCCCceeeeeeccC--
Q psy8448 216 YVRIHGLKSG--KMLKEFRG------HSSFVNDITFT---AD----GHSVLSAS-SDGTVKMWNLKTTECTSTFKSLG-- 277 (482)
Q Consensus 216 ~i~i~d~~~~--~~~~~~~~------~~~~i~~l~~~---~~----~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~-- 277 (482)
.|.+||+.+. +.++.+.- ....+..+.+. |+ +.++..+. ..+.|.++|+.+++.-+......
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 6778888888 77766542 23457788887 22 33444443 46779999999987655442110
Q ss_pred ---------CC----ccceeEEEEcCC----CCCEEEEEe-CCCeEEEEEc---CC----cEEEEecCCcccCcCEEEEE
Q psy8448 278 ---------AS----DIAVNSIHLLPK----NTEHFVVCN-KTNTVVIMNM---QG----QIVRSLSSGKREGGDFLCCT 332 (482)
Q Consensus 278 ---------~~----~~~v~~i~~~~~----~~~~l~~~~-~d~~i~i~d~---~~----~~~~~~~~~~~~~~~v~~~~ 332 (482)
+. ...+..|+++|+ + +.|.-.. ....+.--.. +. ..++.+-. +.....-..++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~-~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~-kg~~s~~~~~~ 281 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGN-RPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGN-RGKYNDAIALA 281 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSC-CEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEE-CCTTCCEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCC-eEEEEEECCCCcEEEEEHHHhhCcchhhceEEeee-cCCCCCcceEE
Confidence 00 135777888886 4 3333333 3223332221 11 11111111 10112334566
Q ss_pred Ec-CCCCEEEEEeCCcEEEEEee
Q psy8448 333 TS-PRGEWIYCVGEDMVLVVRLI 354 (482)
Q Consensus 333 ~~-~~g~~l~~~~~dg~i~iw~~ 354 (482)
++ .+|..+++--..+.|..|+.
T Consensus 282 ~D~~~G~ly~~~~~~~aI~~w~~ 304 (381)
T 3q6k_A 282 YDPKTKVIFFAEANTKQVSCWNT 304 (381)
T ss_dssp ECTTTCEEEEEESSSSEEEEEET
T ss_pred EeCCCCeEEEEeccCCeEEEEeC
Confidence 65 56666666667777885544
No 374
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=61.11 E-value=82 Score=27.30 Aligned_cols=191 Identities=16% Similarity=0.156 Sum_probs=104.4
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeEeE-------EeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeC---CC-----
Q psy8448 160 RDSEMLASGSQSGKVKIWKIATGQCLR-------KLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGL---KS----- 224 (482)
Q Consensus 160 ~~~~~l~~~~~dg~i~iwd~~~~~~~~-------~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~---~~----- 224 (482)
|+..++++.+.+|.|+--.+.+-+... .+.......+..+........|+..+..|.++-+.. ..
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 355678889999999887765422111 111112344545555555667888888887665543 22
Q ss_pred -CceEE---EeeccccceeEEEEc---CCCCEEEEEeCCCcEEEEECCCCce-----eeeeeccCCCccceeEEEEcCCC
Q psy8448 225 -GKMLK---EFRGHSSFVNDITFT---ADGHSVLSASSDGTVKMWNLKTTEC-----TSTFKSLGASDIAVNSIHLLPKN 292 (482)
Q Consensus 225 -~~~~~---~~~~~~~~i~~l~~~---~~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~~~~v~~i~~~~~~ 292 (482)
|.++. .+. ....|.++..- .++.+++..+.+|.++.-.+..... ...+. +... ..+..+......
T Consensus 81 ~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~-l~~~-d~lv~~~~~~~~ 157 (307)
T 1zi0_A 81 RGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIK-LVDG-DELIGVDLTSGE 157 (307)
T ss_dssp CCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSC-CCTT-CCEEEEEEECTT
T ss_pred CCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEE-ECCC-CEEEEEEEeCCC
Confidence 22211 122 23445555432 3566789999999999887642211 11111 1122 445454444433
Q ss_pred CCEEEEEeCCCeEEEEEcC-----Cc---EEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehh
Q psy8448 293 TEHFVVCNKTNTVVIMNMQ-----GQ---IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQ 356 (482)
Q Consensus 293 ~~~l~~~~~d~~i~i~d~~-----~~---~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~ 356 (482)
..++..+.+|.+..+... ++ -+.-+.-. ....|.++...+++..|++.+..|..+-..+..
T Consensus 158 -~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~--~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 158 -DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG--EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAE 226 (307)
T ss_dssp -CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC--TTCCEEEEECCCSSCEEEEEETTSEEEEECGGG
T ss_pred -CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC--CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHH
Confidence 567778888888777752 11 11111111 245677776656667888899999988655543
No 375
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=59.93 E-value=43 Score=32.03 Aligned_cols=62 Identities=19% Similarity=0.213 Sum_probs=42.8
Q ss_pred CcEEEEEEcCCCCEEEEEeC------------CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEE
Q psy8448 101 SHVECARFSPDGQYLITGSV------------DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASG 168 (482)
Q Consensus 101 ~~v~~~~~s~~~~~l~s~~~------------dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~ 168 (482)
+....|.|.++|.+.+.... ...|..++..++++...+.... ...++.++|+||++.|+++
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~-------~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI-------GCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCT-------TCEEEEEEECTTSSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCC-------CccccCCEECCCCCEEEEE
Confidence 46788999999988774321 1257777777777554433221 2568999999999988776
Q ss_pred e
Q psy8448 169 S 169 (482)
Q Consensus 169 ~ 169 (482)
-
T Consensus 549 v 549 (592)
T 4a9v_A 549 I 549 (592)
T ss_dssp E
T ss_pred E
Confidence 4
No 376
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=58.50 E-value=95 Score=27.18 Aligned_cols=166 Identities=10% Similarity=0.025 Sum_probs=89.6
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeec-cccc---cccccccccccEEEEEEcC---CCCEEEEEeCCC
Q psy8448 100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKD-LKYQ---AQDNFMLMEEAVMSLAYSR---DSEMLASGSQSG 172 (482)
Q Consensus 100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~---~~~~~~~h~~~i~~l~~~~---~~~~l~~~~~dg 172 (482)
.+.+..+........|+..+..|.++-.....-..... -... ..-.+. -.+.|.++...+ ++.+++.++.+|
T Consensus 38 ~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G 116 (323)
T 1wp5_A 38 TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNG 116 (323)
T ss_dssp TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTS
T ss_pred CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCC
Confidence 34455555555556677777788776665432111000 0000 000011 124455543333 256899999999
Q ss_pred cEEEEEcCCC------eEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCce-------EEEee-ccccce
Q psy8448 173 KVKIWKIATG------QCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKM-------LKEFR-GHSSFV 238 (482)
Q Consensus 173 ~i~iwd~~~~------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~-~~~~~i 238 (482)
.++-..+..- ..+..+.......+..+........++..+.+|.+..+....-.. +.-++ .....|
T Consensus 117 ~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~V 196 (323)
T 1wp5_A 117 MVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYI 196 (323)
T ss_dssp EEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCE
T ss_pred eEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEE
Confidence 9999887421 112222112235555555555566788888899988887643111 11111 123456
Q ss_pred eEEEEcCCCC-EEEEEeCCCcEEEEECCC
Q psy8448 239 NDITFTADGH-SVLSASSDGTVKMWNLKT 266 (482)
Q Consensus 239 ~~l~~~~~~~-~l~~~~~dg~i~i~d~~~ 266 (482)
.++...+++. .+++.+..|..+..++..
T Consensus 197 v~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 197 VSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 6665444445 788888899888877654
No 377
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=57.58 E-value=53 Score=31.42 Aligned_cols=62 Identities=18% Similarity=0.199 Sum_probs=42.9
Q ss_pred ccEEEEEEcCCCCEEEEEeC------------CCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEE
Q psy8448 151 EAVMSLAYSRDSEMLASGSQ------------SGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTAS 212 (482)
Q Consensus 151 ~~i~~l~~~~~~~~l~~~~~------------dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 212 (482)
.....|.|.++|.+.+.... ...+..++..+++....+.......++.++|+||++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 45778999999986664321 125666676677765555323446789999999999887764
No 378
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=55.16 E-value=92 Score=30.79 Aligned_cols=36 Identities=14% Similarity=0.329 Sum_probs=29.6
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEee
Q psy8448 152 AVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLE 189 (482)
Q Consensus 152 ~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 189 (482)
.|.++.+ +..++++-+.|.++++|++.+++++....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 4665555 46799999999999999999999887764
No 379
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=54.47 E-value=2e+02 Score=29.73 Aligned_cols=38 Identities=21% Similarity=0.341 Sum_probs=32.8
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeee
Q psy8448 237 FVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFK 274 (482)
Q Consensus 237 ~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 274 (482)
.+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 46677778888899999999999999999999887654
No 380
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=50.80 E-value=2.1e+02 Score=28.82 Aligned_cols=154 Identities=10% Similarity=0.127 Sum_probs=80.3
Q ss_pred cccEEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCeEeEEeecc------cCCCeEEEEEccCC-CEEEEEECC------C
Q psy8448 150 EEAVMSLAYSRD-SEMLASGSQSGKVKIWKIATGQCLRKLEKA------HSLGVTCIQFSRDN-SQILTASFD------T 215 (482)
Q Consensus 150 ~~~i~~l~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~~v~~i~~~~~~-~~l~~~~~d------g 215 (482)
...|.+|+++|. ...+++++..+.|...+ ..++.-..+... ....+.++++.|.. ..++++..+ +
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 357999999995 45677777777665554 334433333211 12469999999843 445554432 3
Q ss_pred eEEEEeCCCCceEEEeecc---------ccceeEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeeeeeccC---CCccc
Q psy8448 216 YVRIHGLKSGKMLKEFRGH---------SSFVNDITFTAD-GHSVLSASSDGTVKMWNLKTTECTSTFKSLG---ASDIA 282 (482)
Q Consensus 216 ~i~i~d~~~~~~~~~~~~~---------~~~i~~l~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~~~ 282 (482)
.| +...+.++.-..+... ...+..++++|. ...++.+...+.|. ...+.++.-..+.... .....
T Consensus 93 ~v-~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~~~ 170 (789)
T 1sqj_A 93 AF-YVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNGIG 170 (789)
T ss_dssp EE-EEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTTTC
T ss_pred EE-EEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccccCCCCC
Confidence 33 2333445443333210 113567888874 34555555344332 2223333222221110 11245
Q ss_pred eeEEEEcCCCCCEEEEEeCC-CeEE
Q psy8448 283 VNSIHLLPKNTEHFVVCNKT-NTVV 306 (482)
Q Consensus 283 v~~i~~~~~~~~~l~~~~~d-~~i~ 306 (482)
+..+.+.|..+..++++..+ +.|.
T Consensus 171 ~~~i~~~p~~~~~~~~~~~~~~~v~ 195 (789)
T 1sqj_A 171 YTSVIFDPERNGTIYASATAPQGMY 195 (789)
T ss_dssp EEEEEECTTSTTCEEEEESSTTCEE
T ss_pred eEEEEECCCCCCEEEEEEcCCCeEE
Confidence 78899998765566666655 4443
No 381
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=48.68 E-value=24 Score=34.74 Aligned_cols=38 Identities=24% Similarity=0.551 Sum_probs=30.9
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccc
Q psy8448 101 SHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKY 140 (482)
Q Consensus 101 ~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 140 (482)
..|.++.+. ..++++-+.|+++|+|++.+++++.....
T Consensus 222 ~~Is~~~~~--~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLFH--ERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEET--TTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEeccC--CcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 356666654 67999999999999999999998776655
No 382
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=42.68 E-value=1.5e+02 Score=24.82 Aligned_cols=159 Identities=8% Similarity=0.060 Sum_probs=83.0
Q ss_pred EEEEEECCCeEEEEeCCCCce-EEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECC---C----CceeeeeeccCC
Q psy8448 207 QILTASFDTYVRIHGLKSGKM-LKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLK---T----TECTSTFKSLGA 278 (482)
Q Consensus 207 ~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~---~----~~~~~~~~~~~~ 278 (482)
.+++.+.+|.|+--....... ...++.. +.+..+........|+..+..|.+.-+... . |.++...-.+ .
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke~-D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L-~ 81 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKAG-DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTL-P 81 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCTT-CCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCC-C
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCCC-CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecC-C
Confidence 456667778777655433211 1123322 334444333344557777788876655432 1 2211111111 2
Q ss_pred CccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC--------CcEEEEecCCcccCcCEEEEEEc-CCCCEEEEEeCCcEE
Q psy8448 279 SDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ--------GQIVRSLSSGKREGGDFLCCTTS-PRGEWIYCVGEDMVL 349 (482)
Q Consensus 279 ~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~--------~~~~~~~~~~~~~~~~v~~~~~~-~~g~~l~~~~~dg~i 349 (482)
....|.++....++ ..++..+..|.++...+. |.....+.. ...+..+... .++..|+..+.+|.+
T Consensus 82 ~~e~Iv~~~~~~~~-~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~----~d~lv~~~~~~~~~~~i~l~T~~G~~ 156 (256)
T 1zvt_A 82 PGATVDHMLMESDD-QKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE----NAHVMPPVVIEDASDMLLAITQAGRM 156 (256)
T ss_dssp TTCCEEEEECCCTT-CEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT----TCCBCCCEECCCTTCEEEEEETTSEE
T ss_pred CCCEEEEEEEeCCC-CEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC----CCEEEEEEEecCCCCEEEEEcCCCeE
Confidence 23456666443333 678888999999988762 122222221 3345555555 356688899999998
Q ss_pred EEEeehhhhhhhcccccceeeeec
Q psy8448 350 VVRLIQQYLKESNLMKTLQCLQEE 373 (482)
Q Consensus 350 ~iw~~~~~~~~~~~~~~~~~~~~~ 373 (482)
..+...+...... ...++..++.
T Consensus 157 lrf~~~ei~~~gR-a~GV~~i~L~ 179 (256)
T 1zvt_A 157 LMFPVSDLPQLSK-GKGNKIINIP 179 (256)
T ss_dssp EEEEGGGSCBCSS-BSCEESSCCC
T ss_pred EEEEHHHCCCcCc-cCCeEEEEcc
Confidence 8776664433333 3333344433
No 383
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=42.11 E-value=1.5e+02 Score=24.76 Aligned_cols=145 Identities=17% Similarity=0.189 Sum_probs=81.1
Q ss_pred CEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCC-------CeEe
Q psy8448 113 QYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIAT-------GQCL 185 (482)
Q Consensus 113 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~-------~~~~ 185 (482)
..+++.+.+|.|+--....-. ...+.... .+.+..+........|+..+..|.+.-+.... |..+
T Consensus 3 ~v~v~lT~~G~iKr~~~~~~~-~~~~~lke-------~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i 74 (256)
T 1zvt_A 3 PVTIVLSQMGWVRSAKGHDID-APGLNYKA-------GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPL 74 (256)
T ss_dssp EEEEEEETTSEEEEEESSCCC-STTSCCCT-------TCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEG
T ss_pred CEEEEEeCCCEEEEeeCCcCC-ceeccCCC-------CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEe
Confidence 345666777777655543211 11111111 24455554444555677778888876665421 2211
Q ss_pred E-EeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCC-------CceEEEeeccccceeEEEEc-CCCCEEEEEeCC
Q psy8448 186 R-KLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKS-------GKMLKEFRGHSSFVNDITFT-ADGHSVLSASSD 256 (482)
Q Consensus 186 ~-~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~i~~l~~~-~~~~~l~~~~~d 256 (482)
. .+.......|.++....++.+|+.++..|.++...+.. +.....++. .+.+..+... .++..++..+.+
T Consensus 75 ~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~-~d~lv~~~~~~~~~~~i~l~T~~ 153 (256)
T 1zvt_A 75 TGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQA 153 (256)
T ss_dssp GGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETT
T ss_pred eeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC-CCEEEEEEEecCCCCEEEEEcCC
Confidence 1 11112345577664434567788999999999987743 222333332 2345444444 345678888899
Q ss_pred CcEEEEECCC
Q psy8448 257 GTVKMWNLKT 266 (482)
Q Consensus 257 g~i~i~d~~~ 266 (482)
|.+..+....
T Consensus 154 G~~lrf~~~e 163 (256)
T 1zvt_A 154 GRMLMFPVSD 163 (256)
T ss_dssp SEEEEEEGGG
T ss_pred CeEEEEEHHH
Confidence 9988888754
No 384
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=29.07 E-value=4.4e+02 Score=26.16 Aligned_cols=239 Identities=9% Similarity=0.005 Sum_probs=108.3
Q ss_pred cEEEEEEcCC-CCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC-CCCEEEEEeCC-------C
Q psy8448 102 HVECARFSPD-GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR-DSEMLASGSQS-------G 172 (482)
Q Consensus 102 ~v~~~~~s~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~~~~~d-------g 172 (482)
.|..|+++|. ...+.++...+.|...+ ..++.-..+....... .-....|.+++++| +.+.++++... +
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~-D~G~tW~~i~~~~~~~-~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~ 101 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWD-PSTETWIPLLDHFQMD-EYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPN 101 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEE-TTTTEEEECCTTCCGG-GGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeC-CCCCCEEECcCccCcc-cccCCCcceEEeCCCCCCEEEEEecccccccccC
Confidence 7999999995 35566666556666554 2333222111110000 00124699999998 33445444321 1
Q ss_pred cEEEEEcCC-CeEeEEeecccC--------CCeEEEEEccC-CCEEEEEECC-CeEEEEeCCCCceEEEeec--------
Q psy8448 173 KVKIWKIAT-GQCLRKLEKAHS--------LGVTCIQFSRD-NSQILTASFD-TYVRIHGLKSGKMLKEFRG-------- 233 (482)
Q Consensus 173 ~i~iwd~~~-~~~~~~~~~~~~--------~~v~~i~~~~~-~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~-------- 233 (482)
...||.-.+ ++.-..+..... ..+..++++|. ...++.+... ..|. ...+.++.-..+..
T Consensus 102 ~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~g~gl~-~S~DgG~tW~~~~~~~~~~~~~ 180 (737)
T 2cn3_A 102 MGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRCGNGLW-RSTDYGVTWSKVESFPNPGTYI 180 (737)
T ss_dssp CCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECSTTCCEE-EESSTTSSCEECTTCCCCCCCB
T ss_pred CccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeeccCCcEE-EeCCCCcceecccCCCCCcccc
Confidence 245555433 332222211111 12467899885 3556666533 2332 22233332222211
Q ss_pred ---------cccceeEEEEcCCC-------CEEEEEeCCCcEEEEEC-CCCceeeeeeccCCCccceeEEEEcCCCCCEE
Q psy8448 234 ---------HSSFVNDITFTADG-------HSVLSASSDGTVKMWNL-KTTECTSTFKSLGASDIAVNSIHLLPKNTEHF 296 (482)
Q Consensus 234 ---------~~~~i~~l~~~~~~-------~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 296 (482)
....+..+.++|.. ..+.++..++.-.+|-- +.++.-..+... ........+.++|++ .++
T Consensus 181 ~~p~~~~~~~~~g~~~v~~dp~~~~~~~~~~~v~~~~~~~~~~v~~S~DgG~tW~~~~~~-p~~~~~~~~~~~~~~-~l~ 258 (737)
T 2cn3_A 181 YDPNFDYTKDIIGVVWVVFDKSSSTPGNPTKTIYVGVADKNESIYRSTDGGVTWKAVPGQ-PKGLLPHHGVLASNG-MLY 258 (737)
T ss_dssp SCTTSTTTCSBCCEEEEEECGGGSCTTSCCSCEEEEESCSSCCEEEESSTTSCCEECTTC-CCSSEEEEEEECTTS-EEE
T ss_pred cCcccccccCCCCEEEEEcCCCCcccCCCCCEEEEEecCCCccEEEEcCCCCceEECCCC-CCcccceEEEECCCC-eEE
Confidence 11236778887743 24666655542223433 333322222111 111122345677754 444
Q ss_pred EEEe---------CCCeEEEEEcCCcEEEEecCCccc----CcCEEEEEEcCCC-CEEEEEeC
Q psy8448 297 VVCN---------KTNTVVIMNMQGQIVRSLSSGKRE----GGDFLCCTTSPRG-EWIYCVGE 345 (482)
Q Consensus 297 ~~~~---------~d~~i~i~d~~~~~~~~~~~~~~~----~~~v~~~~~~~~g-~~l~~~~~ 345 (482)
++.. ..+.|...+-.+.....+...... ......++++|.. ..|++++.
T Consensus 259 ~~~~d~~g~y~~~~~g~v~~s~d~G~tW~~i~~~~~~~~~~~~~~~~i~v~p~~~~~ly~~~~ 321 (737)
T 2cn3_A 259 ITYGDTCGPYDGNGKGQVWKFNTRTGEWIDITPIPYSSSDNRFCFAGLAVDRQNPDIIMVTSM 321 (737)
T ss_dssp EEEESSCCSSCCSCCEEEEEEETTTCCEEECCSSCTTSTTCCSEEEEEEECTTCTTCEEEEEE
T ss_pred EEecCCCCccccccCceEEEEeCCCCCEEEccCCCCCCcccccccccEEEcCCCCCEEEEEec
Confidence 4432 233454444455555554432110 1123458888753 45555543
No 385
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=27.34 E-value=3.3e+02 Score=24.24 Aligned_cols=194 Identities=16% Similarity=0.141 Sum_probs=104.8
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-----------eEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEE
Q psy8448 152 AVMSLAYSRDSEMLASGSQSGKVKIWKIATG-----------QCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIH 220 (482)
Q Consensus 152 ~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~-----------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~ 220 (482)
.+..++.+......+.-..||.|..|-.... .....+.......|..++.. ..+.+.-..+|.|+.|
T Consensus 106 ~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~w 183 (389)
T 3kci_A 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTW 183 (389)
T ss_dssp CEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEE
T ss_pred ceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEe
Confidence 4555677766667777788999999964321 11122211122356666653 4456666779999999
Q ss_pred eCCCC-c----------eEEEeec-cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCC-c--------eeeeeeccCCC
Q psy8448 221 GLKSG-K----------MLKEFRG-HSSFVNDITFTADGHSVLSASSDGTVKMWNLKTT-E--------CTSTFKSLGAS 279 (482)
Q Consensus 221 d~~~~-~----------~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~-~--------~~~~~~~~~~~ 279 (482)
-.... + ....+.. ....|..++........+....+|.|..|-.... + ...........
T Consensus 184 G~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~ 263 (389)
T 3kci_A 184 GKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLT 263 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGT
T ss_pred CCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccC
Confidence 65321 0 0111111 2234666666543456677788999999964321 1 01111100012
Q ss_pred ccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC--Cc----------EEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCc
Q psy8448 280 DIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ--GQ----------IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDM 347 (482)
Q Consensus 280 ~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~--~~----------~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg 347 (482)
...|..++.-. ...++-..+|.|+.|-.. ++ ....+.. .....|..++.. ....++...||
T Consensus 264 ~~~v~~v~~G~---~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~--l~~~~v~~ia~G--~~h~~al~~~G 336 (389)
T 3kci_A 264 GLGVVKVECGS---QFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQG--LQGKKVIAIATG--SLHCVCCTEDG 336 (389)
T ss_dssp TSCEEEEEEET---TEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGG--GTTCCEEEEEEC--SSEEEEEETTC
T ss_pred CCcEEEEeCCC---CEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEecc--CCCCCEEEEEec--cCeEEEECCCC
Confidence 23455665543 556666889999999752 11 1111111 112356666654 34556678899
Q ss_pred EEEEEee
Q psy8448 348 VLVVRLI 354 (482)
Q Consensus 348 ~i~iw~~ 354 (482)
.++.|=.
T Consensus 337 ~v~~wG~ 343 (389)
T 3kci_A 337 EVYTWGD 343 (389)
T ss_dssp CEEEEEC
T ss_pred CEEEeeC
Confidence 9996543
No 386
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=26.88 E-value=4.8e+02 Score=25.88 Aligned_cols=189 Identities=11% Similarity=0.108 Sum_probs=90.7
Q ss_pred cEEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCeEeEEeecc------cCCCeEEEEEcc-CCCEEEEEECCC-------e
Q psy8448 152 AVMSLAYSRDS-EMLASGSQSGKVKIWKIATGQCLRKLEKA------HSLGVTCIQFSR-DNSQILTASFDT-------Y 216 (482)
Q Consensus 152 ~i~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~~v~~i~~~~-~~~~l~~~~~dg-------~ 216 (482)
.|..|+++|.. ..++++...+.|...+ ..++.-..+... ....|.+|+++| +...++++.... .
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~-D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWD-PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEE-TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeC-CCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Confidence 79999999953 5666676666665555 233333333111 124699999998 334555444210 1
Q ss_pred EEEE-eCCCCceEEEeec-c--------ccceeEEEEcCC-CCEEEEEeCCCcEEEE-ECCCCceeeeeeccC-------
Q psy8448 217 VRIH-GLKSGKMLKEFRG-H--------SSFVNDITFTAD-GHSVLSASSDGTVKMW-NLKTTECTSTFKSLG------- 277 (482)
Q Consensus 217 i~i~-d~~~~~~~~~~~~-~--------~~~i~~l~~~~~-~~~l~~~~~dg~i~i~-d~~~~~~~~~~~~~~------- 277 (482)
..|| ..+.++.-..+.. . ...+..|+++|. ...++.+...|. -+| ..+.++.-..+..+.
T Consensus 103 ~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~g~-gl~~S~DgG~tW~~~~~~~~~~~~~~ 181 (737)
T 2cn3_A 103 GAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRCGN-GLWRSTDYGVTWSKVESFPNPGTYIY 181 (737)
T ss_dssp CEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECSTTC-CEEEESSTTSSCEECTTCCCCCCCBS
T ss_pred ccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeeccCC-cEEEeCCCCcceecccCCCCCccccc
Confidence 2333 3333433222221 1 112467899885 355666653321 133 223332211111100
Q ss_pred -------CCccceeEEEEcCCCC------CEEEEEeCCCeEEEEEc-C-CcEEEEecCCcccCcCEEEEEEcCCCCEEEE
Q psy8448 278 -------ASDIAVNSIHLLPKNT------EHFVVCNKTNTVVIMNM-Q-GQIVRSLSSGKREGGDFLCCTTSPRGEWIYC 342 (482)
Q Consensus 278 -------~~~~~v~~i~~~~~~~------~~l~~~~~d~~i~i~d~-~-~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~ 342 (482)
.....+..+.+.|... ..++++..++.-.+|-. + |+....+..... ......+.++|++.+.++
T Consensus 182 ~p~~~~~~~~~g~~~v~~dp~~~~~~~~~~~v~~~~~~~~~~v~~S~DgG~tW~~~~~~p~-~~~~~~~~~~~~~~l~~~ 260 (737)
T 2cn3_A 182 DPNFDYTKDIIGVVWVVFDKSSSTPGNPTKTIYVGVADKNESIYRSTDGGVTWKAVPGQPK-GLLPHHGVLASNGMLYIT 260 (737)
T ss_dssp CTTSTTTCSBCCEEEEEECGGGSCTTSCCSCEEEEESCSSCCEEEESSTTSCCEECTTCCC-SSEEEEEEECTTSEEEEE
T ss_pred CcccccccCCCCEEEEEcCCCCcccCCCCCEEEEEecCCCccEEEEcCCCCceEECCCCCC-cccceEEEECCCCeEEEE
Confidence 1123467788887542 25666665543223433 2 444444442211 112245677887665554
Q ss_pred E
Q psy8448 343 V 343 (482)
Q Consensus 343 ~ 343 (482)
.
T Consensus 261 ~ 261 (737)
T 2cn3_A 261 Y 261 (737)
T ss_dssp E
T ss_pred e
Confidence 4
No 387
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=24.84 E-value=1.8e+02 Score=20.41 Aligned_cols=49 Identities=4% Similarity=-0.067 Sum_probs=20.3
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEE
Q psy8448 162 SEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILT 210 (482)
Q Consensus 162 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 210 (482)
+.+.+.-..||.+.+++...+..+..........-..+.+..+|.+++.
T Consensus 24 g~~~L~~q~dGNLvL~~~~~~~~vWssnt~~~~~~~~l~l~~dGNLVl~ 72 (113)
T 3mez_B 24 RDYSLVMRDDCNLVLTKGSKTNIVWESGTSGRGQHCFMRLGHSGELDIT 72 (113)
T ss_dssp TTEEEEECTTSCEEEEETTTTEEEEECCCTTSCSSCEEEECTTSCEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCEEEEECCcccCCcCEEEEEeCCCcEEEE
Confidence 3344444455555555532233333321111111234555556655444
No 388
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=23.29 E-value=5e+02 Score=24.85 Aligned_cols=196 Identities=13% Similarity=0.157 Sum_probs=0.0
Q ss_pred CCCEEEEEeCC---------------CcEEEEEcCCCeEeEEeecc-------cCCCeEEEEEccCCCE-EEEEECCCe-
Q psy8448 161 DSEMLASGSQS---------------GKVKIWKIATGQCLRKLEKA-------HSLGVTCIQFSRDNSQ-ILTASFDTY- 216 (482)
Q Consensus 161 ~~~~l~~~~~d---------------g~i~iwd~~~~~~~~~~~~~-------~~~~v~~i~~~~~~~~-l~~~~~dg~- 216 (482)
||++=+....+ ..|.+|++. ++.+..+..+ |-..+....|.-||+. |++...+|+
T Consensus 125 DG~~EiVv~~dp~n~~d~s~~g~tg~~~l~aY~ld-G~~LW~idlg~ni~aGa~yt~~~V~DlDGDGkaEIvv~TadGt~ 203 (591)
T 2zux_A 125 DGQYELILKWDPSNSKDNSQDGYTGDVLIDAYKLD-GTKLWRINLGKNIRAGAHYTQFMVYDLDGDGKAEVAMKTADGTK 203 (591)
T ss_dssp SSSCEEEEEEEETTCCCTTCCSCCCCCEEEEECTT-SCEEEEEECCTTSCCSTTSCCCEEECSSSSSSCEEEEEECTTCB
T ss_pred CCCEEEEEEECCcccccccccCcCCCcEEEEEECC-CCEEEEEcCCCCcccccccCceeEEEcCCCCcceEEEEccCCcc
Q ss_pred ---------------------------EEEEeCCCCceEEEeeccccc-----------------eeEEEE-cCCCCEEE
Q psy8448 217 ---------------------------VRIHGLKSGKMLKEFRGHSSF-----------------VNDITF-TADGHSVL 251 (482)
Q Consensus 217 ---------------------------i~i~d~~~~~~~~~~~~~~~~-----------------i~~l~~-~~~~~~l~ 251 (482)
|.++|=.+++.+.+..-.... ..++++ +-+...++
T Consensus 204 dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~~~WGD~ygnR~drf~~~vayLDG~~Ps~v 283 (591)
T 2zux_A 204 DGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNVSDWGDSYGNRVDRFLAGIAYLDGQRPSLI 283 (591)
T ss_dssp CTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCGGGGTCSSSSGGGCEEEEEECTTSSSCEEE
T ss_pred cCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCcccccccccccccccceeeEEECCCCCceEE
Q ss_pred EEe---CCCcEEEEECCCCceeeeeeccCCCc----------cceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEe
Q psy8448 252 SAS---SDGTVKMWNLKTTECTSTFKSLGASD----------IAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSL 318 (482)
Q Consensus 252 ~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~----------~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 318 (482)
.+- ....|..||.+.++....+....... ..+.-..+.-+|..-++.++. ++|-+|+.+...
T Consensus 284 ~~rGyYtr~~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVDgDG~dEIv~Gs~-----~iD~dG~~L~st 358 (591)
T 2zux_A 284 MTRGYYAKTMLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVDGDGKDEIIFGSM-----AVDHDGKGMYST 358 (591)
T ss_dssp EEECCSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECCSSSSSCEEEETTE-----EECTTSCEEEEC
T ss_pred EeccccceeEEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeCCCCCCceEEEeee-----EECCCCCEeeeC
Q ss_pred cCCcccCcCEEEEEEcCC--CCEEEEEeCC-----cEEEEEeehhhhhhhcccccceeeeecccceeecccc
Q psy8448 319 SSGKREGGDFLCCTTSPR--GEWIYCVGED-----MVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDS 383 (482)
Q Consensus 319 ~~~~~~~~~v~~~~~~~~--g~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (482)
...+ ...+....|.|+ |..++.+.++ |... .+..+|+.+-....
T Consensus 359 ~~gH--GDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~-------------------~dA~tG~vlw~~~~ 409 (591)
T 2zux_A 359 GLGH--GDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSF-------------------RDAATGKILWGVYA 409 (591)
T ss_dssp SCCC--CSCEEEECCCTTSSSCEEEEECCCTTSSCSEEE-------------------EETTTCCEEEEECC
T ss_pred CCCC--CCeeEEeecCCCCCCcEEEEEecCCCCCCccEE-------------------EECCCCcEEEEcCC
No 389
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=22.36 E-value=5.9e+02 Score=25.37 Aligned_cols=152 Identities=14% Similarity=0.157 Sum_probs=75.8
Q ss_pred cccEEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCeEeEEeecc-----------cCCCeEEEEEcc-CCCEEEEEECC--
Q psy8448 150 EEAVMSLAYSRDS-EMLASGSQSGKVKIWKIATGQCLRKLEKA-----------HSLGVTCIQFSR-DNSQILTASFD-- 214 (482)
Q Consensus 150 ~~~i~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------~~~~v~~i~~~~-~~~~l~~~~~d-- 214 (482)
...|.+++++|.+ +.++++...|.|...+ ..++.-..+... ....+.+++++| +...++++...
T Consensus 20 ~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~-DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~~ 98 (763)
T 3a0f_A 20 GGFISGLVAHPTEKDLIYARTDIGGTYRWN-AAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDYV 98 (763)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSCT
T ss_pred CCceeEEEeCCCCCCEEEEEeccCcEEEEC-CCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEecccc
Confidence 4689999999965 5666666666654443 234333332211 224589999988 33445444321
Q ss_pred ----CeEEEEeCCCCceEEEeecc-------ccc--eeEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeeeeeccC---
Q psy8448 215 ----TYVRIHGLKSGKMLKEFRGH-------SSF--VNDITFTAD-GHSVLSASSDGTVKMWNLKTTECTSTFKSLG--- 277 (482)
Q Consensus 215 ----g~i~i~d~~~~~~~~~~~~~-------~~~--i~~l~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--- 277 (482)
+...+...+.++.-..+... .+. ...++++|. ...++++...+.|. ...+.++.-..+....
T Consensus 99 ~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~-~S~DgG~TW~~~~~~~~~~ 177 (763)
T 3a0f_A 99 QWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLW-RSTDRAQTWSRMNQLPDSS 177 (763)
T ss_dssp TTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEE-EESSTTSSCEECTTSCCCS
T ss_pred cCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEE-EECCCCcCccccccCcccC
Confidence 12222333444432222210 111 146888874 34455555444332 2233333222221111
Q ss_pred CCccceeEEEEcCCCCCEEEEEeCCC
Q psy8448 278 ASDIAVNSIHLLPKNTEHFVVCNKTN 303 (482)
Q Consensus 278 ~~~~~v~~i~~~~~~~~~l~~~~~d~ 303 (482)
.....+..+.+.|..+..++++..++
T Consensus 178 ~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 178 TYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp CTTTCEEEEEECSSSTTCEEEEESST
T ss_pred CCccceEEEEECCCCCCEEEEEEeCC
Confidence 11235778899987655566666554
No 390
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=21.64 E-value=5.5e+02 Score=24.73 Aligned_cols=204 Identities=13% Similarity=0.183 Sum_probs=99.8
Q ss_pred eEEEEecCCCceeeccccccccccccccccEEEEEEcCCCC-EEEEEeCCCc----------------------------
Q psy8448 123 FIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSE-MLASGSQSGK---------------------------- 173 (482)
Q Consensus 123 ~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~~~~~dg~---------------------------- 173 (482)
.|.+|++. ++.+..+..........|-..+....|.-||+ .+++...+|+
T Consensus 156 ~l~aY~ld-G~~LW~idlg~Ni~aGahyt~~~V~DlDGDGkaEIvv~TadGt~dg~g~vigd~~~dyr~~~g~il~G~ey 234 (620)
T 2zuy_A 156 LIDAYKLD-GTFLWRINLGRNIRAGAHYTQFMVYDLDGDGKAEIAMKTADGTTDGKGHIIGDEQADFRNEQGRILSGPEY 234 (620)
T ss_dssp EEEEECTT-SCEEEEEECCTTSCCSTTSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSCTTCCCBCTTSCBCSSCCE
T ss_pred EEEEEECC-CCEEEEEcCCCCcccccccCceeEEEcCCCCcceEEEEccCCcccCcceeecccccccccccceEecCCeE
Confidence 46666664 55544443322222223556777888888775 5666666655
Q ss_pred EEEEEcCCCeEeEEeecc-cCCC---------------eEEEEEcc-CCCEEEEEE---CCCeEEEEeCCCCceEE--Ee
Q psy8448 174 VKIWKIATGQCLRKLEKA-HSLG---------------VTCIQFSR-DNSQILTAS---FDTYVRIHGLKSGKMLK--EF 231 (482)
Q Consensus 174 i~iwd~~~~~~~~~~~~~-~~~~---------------v~~i~~~~-~~~~l~~~~---~dg~i~i~d~~~~~~~~--~~ 231 (482)
+.++|=.+++.+..+... .... ..++++.. +...++.+. ....|..||.+.++... .+
T Consensus 235 L~vfdG~TG~~l~t~~~~p~rg~~~~WGD~yGnR~drf~~~vayLDG~~Ps~v~~rG~Ytr~~v~A~d~~~g~L~~~W~~ 314 (620)
T 2zuy_A 235 LTVFKGETGEALTTVEYEPPRGKLEDWGDGYGNRMDRFLAGTAYLDGERPSLVMARGYYTRTVLVAYDFRNGRLKKRWVF 314 (620)
T ss_dssp EEEEETTTCCEEEEEECSSCCCSGGGGTSSSSTTTTCEEEEEECTTCC-CEEEEEECSSSSCEEEEEEEETTEEEEEEEE
T ss_pred EEEEcCCCcceeeecccCCCcCccccccccccccccccceeEEecCCCCceEEEecCcccceeEEEEEccCCceeeeeEe
Confidence 588887788777665321 1111 22333321 122333332 12457778887765433 22
Q ss_pred eccc-----------cceeEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEE
Q psy8448 232 RGHS-----------SFVNDITFTADGH-SVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVC 299 (482)
Q Consensus 232 ~~~~-----------~~i~~l~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~ 299 (482)
.... ..+....+.-||+ -|+.++ .++| ..|+.+..... +|...+.--.|.|+.+.+-+..
T Consensus 315 ds~~~~~~~~~gqg~H~~svaDVDGDG~dEIv~Gs-----~~iD-~dG~~L~st~~--gHGDa~hv~d~dP~rpGlev~~ 386 (620)
T 2zuy_A 315 DSNQPGHEAYAGQGNHSLSVADVDGDGKDEIIYGA-----MAVD-HDGTGLYSTGL--GHGDAMHVGDLDPSRKGLEVFQ 386 (620)
T ss_dssp ETTSTTCGGGTTCCCSSCEEECCSSSSSCEEEETT-----EEEC-TTSSEEEECSC--CCCSCEEEECSCTTSSSCEEEE
T ss_pred cCCCCcccccccccCcCceEEecCCCCceeEEEee-----eEEC-CCCCEEeecCC--CCCceeEEEecCCCCCCCEEEE
Confidence 2110 1223333344443 233222 1233 23333333322 6666666667778755544443
Q ss_pred e-CC----CeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCC
Q psy8448 300 N-KT----NTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPR 336 (482)
Q Consensus 300 ~-~d----~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~ 336 (482)
. .+ .-..++|. +|+.+....... +.+......|.|+
T Consensus 387 ~~E~~~~~~G~~~~DA~tG~vlw~~~~~~-D~Gr~~~~Didp~ 428 (620)
T 2zuy_A 387 VHEDATKPYGLSLRDAGTGEILWGVHAGT-DVGRGMAAHIDPS 428 (620)
T ss_dssp ECCCTTSSCSEEEEETTTCCEEEEECCSS-CCCEEEEECCCTT
T ss_pred EecCCCCCCceEEEECCCCcEEEEecCcc-cCCceEEEecCCC
Confidence 3 32 24567787 788777765431 2333333344444
No 391
>3s9j_A Member of DUF4221 family; 6-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.75A {Bacteroides vulgatus}
Probab=21.28 E-value=4.4e+02 Score=23.48 Aligned_cols=77 Identities=12% Similarity=0.135 Sum_probs=49.8
Q ss_pred cCCCCEEEEEe-CCC--cEEEEECCCCceeeeeeccCCCccc---e-eEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEE
Q psy8448 244 TADGHSVLSAS-SDG--TVKMWNLKTTECTSTFKSLGASDIA---V-NSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVR 316 (482)
Q Consensus 244 ~~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~~~~---v-~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 316 (482)
+.+..+|+.-. ... .|.++|+++++....+......... + .++.+...+ .+++++.....|.++|..|+.+.
T Consensus 36 ~~~k~yL~~~N~~~~~~~i~~iDL~~~kl~k~i~~ekEGPNgi~~~~~~~~i~~~D-sI~i~~~~~~~i~l~n~~G~~~~ 114 (369)
T 3s9j_A 36 ENGKEYLHFENTQKSLYDIVIFDIENQQIAKRIPLHKTGPNGLPAVFGSRPSPDSQ-YILVAQNNISRLSSINSQGEIIR 114 (369)
T ss_dssp ETTEEEEEEEECSTTCCEEEEEETTTTEEEEEEECBSSSTTBCTTCCCEEESSSTT-SEEEEEGGGTEEEEECTTCCEEE
T ss_pred cCCcEEEEEeCCCCCcCcEEEEECCCCceeeeeccccCCCCCcccceeeEEecCCC-EEEEEeCCcceEEEECCCceEEE
Confidence 33334444333 356 8999999999988777643322222 3 234444444 67777767778999999999888
Q ss_pred EecCC
Q psy8448 317 SLSSG 321 (482)
Q Consensus 317 ~~~~~ 321 (482)
.+.-.
T Consensus 115 k~~~~ 119 (369)
T 3s9j_A 115 NYNFQ 119 (369)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 87544
Done!