BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy845
(677 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 72/114 (63%), Gaps = 6/114 (5%)
Query: 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493
+G++ F+NV RY +N VL+ V+F + G + ++G TG+GKS+L+ + RL++ G
Sbjct: 339 EGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERG 398
Query: 494 QIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV------GRTGAGKSSLLVA 541
++++D+ D+ +V+L+ LR +S +PQ+ VLF+G + GR A ++ A
Sbjct: 399 RVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEA 452
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 72/112 (64%), Gaps = 5/112 (4%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
++G TG+GKS+L+ + RL++ G++++D+ D+ +V+L+ LR +S +PQ+ VLF+GTI
Sbjct: 374 VLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTI 433
Query: 587 RYNLDPFGR--CHDTELWDALEKSHLKSKVVTMRSKLDSDVQ--GDQLSLGE 634
+ NL +GR D E+ +A + + + ++++ DS V+ G S G+
Sbjct: 434 KENLK-WGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQ 484
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 69/115 (60%), Gaps = 7/115 (6%)
Query: 433 RQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS 492
++G I+F+NV Y D L +VSF + G+ + +VG +GAGKS++L LFR ++SS
Sbjct: 50 QKGRIEFENVHFSYADGRE-TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISS 108
Query: 493 GQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV------GRTGAGKSSLLVA 541
G I+ID DI+ V +LRS + V+PQD VLFN + GR AG + A
Sbjct: 109 GCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAA 163
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 49/69 (71%), Gaps = 1/69 (1%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
+VG +GAGKS++L LFR ++SSG I+ID DI+ V +LRS + V+PQD VLFN TI
Sbjct: 85 LVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTI 144
Query: 587 RYNLDPFGR 595
N+ +GR
Sbjct: 145 ADNI-RYGR 152
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 80/325 (24%), Positives = 152/325 (46%), Gaps = 26/325 (8%)
Query: 218 HLISKVFRSV-----YLRSVFQNMW----SMLFAFLMICFVFPWFALPLLIITTLYHLIS 268
+IS+V V ++ + N+W +++ A ++ F+ L L I Y L
Sbjct: 119 QVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTV 178
Query: 269 KVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLF 328
VF +R+L R + + + + + V G+ ++ F E + + F ++ N+ L
Sbjct: 179 YVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKK---NTNFLT 235
Query: 329 LCSMAMRWLA---VRIDVLAVIAMAIITGLT--VAFHGSVSPALAGLALTYASHVTGLLQ 383
RW A I+ + I I+ G+ +A GS++ + Y + G L+
Sbjct: 236 RALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLR 295
Query: 384 FTVRVFVETELNFLAVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVS 443
V F +F +++R+ +L+ E I + G +++ +QG I +VS
Sbjct: 296 RLVASFTTLTQSFASMDRV----FQLIDEDY-DIKNGVGAQPIEI----KQGRIDIDHVS 346
Query: 444 LRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA 503
+Y DN +L +++ I GE + VG +G GKS+L+ + R +++SGQI ID +I
Sbjct: 347 FQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIK 406
Query: 504 SVELETLRSRLSVIPQDPVLFNGIV 528
+LR+++ ++ QD +LF+ V
Sbjct: 407 DFLTGSLRNQIGLVQQDNILFSDTV 431
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 84/154 (54%), Gaps = 11/154 (7%)
Query: 488 VELSSGQIKID--DFDIASVELETLRS-RLSVIPQDPVLFNGIVGRTGAGKSSLLVALFR 544
+E+ G+I ID F E L+ LS+ + V F VG +G GKS+L+ + R
Sbjct: 333 IEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAF---VGMSGGGKSTLINLIPR 389
Query: 545 LVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGR--CHDTELW 602
+++SGQI ID +I +LR+++ ++ QD +LF+ T++ N+ GR D E+
Sbjct: 390 FYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENI-LLGRPTATDEEVV 448
Query: 603 DALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGE 634
+A + ++ ++ + D++V +G +LS G+
Sbjct: 449 EAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQ 482
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 63/102 (61%), Gaps = 2/102 (1%)
Query: 426 VKLAD-WPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVAL 484
VK D WP G + K+++ +Y + +L N+SF I+ G+ +G++GRTG+GKS+LL A
Sbjct: 8 VKKDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAF 67
Query: 485 FRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG 526
RL+ + G+I+ID S+ LE R VIPQ +F+G
Sbjct: 68 LRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSG 108
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 71/137 (51%), Gaps = 11/137 (8%)
Query: 491 SSGQIKIDDFDIASVE-----LETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRL 545
S GQ+ + D E LE + S+ P V G++GRTG+GKS+LL A RL
Sbjct: 16 SGGQMTVKDLTAKYTEGGNAILENIS--FSISPGQRV---GLLGRTGSGKSTLLSAFLRL 70
Query: 546 VELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDAL 605
+ + G+I+ID S+ LE R VIPQ +F+GT R NLDP D E+W
Sbjct: 71 LN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVA 129
Query: 606 EKSHLKSKVVTMRSKLD 622
++ L+S + KLD
Sbjct: 130 DEVGLRSVIEQFPGKLD 146
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 118/261 (45%), Gaps = 27/261 (10%)
Query: 293 VSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRW----LAVRIDVLAVIA 348
+ +SGL +I +F +E+ + E++D + +L + L ++++ +
Sbjct: 219 IEEDISGLTVIKLFTREE----KEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLG 274
Query: 349 MAIITGLT--VAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCS 406
A+I+G +A ++ + Y+ T L F ++ + ERI
Sbjct: 275 FALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEIL 334
Query: 407 KKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGEN 466
L E P E +V+ G I+FKNV Y P VL +++F I G+
Sbjct: 335 D-LEEEKDDPDAVELREVR---------GEIEFKNVWFSYDKKKP-VLKDITFHIKPGQK 383
Query: 467 IGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG 526
+ +VG TG+GK++++ L R ++ GQI +D DI ++ +LRS + ++ QD +LF+
Sbjct: 384 VALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFST 443
Query: 527 IV------GRTGAGKSSLLVA 541
V G GA + A
Sbjct: 444 TVKENLKYGNPGATDEEIKEA 464
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 77/149 (51%), Gaps = 23/149 (15%)
Query: 481 LVALFRLVELSSGQIKIDDFDIASVELETLRSRL-------SVIPQDPVLFN-------- 525
L + R+ E+ + + DD D +VEL +R + S + PVL +
Sbjct: 324 LASAERIFEILDLEEEKDDPD--AVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPG 381
Query: 526 ---GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF 582
+VG TG+GK++++ L R ++ GQI +D DI ++ +LRS + ++ QD +LF
Sbjct: 382 QKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILF 441
Query: 583 NGTIRYNLDPFGR--CHDTELWDALEKSH 609
+ T++ NL +G D E+ +A + +H
Sbjct: 442 STTVKENL-KYGNPGATDEEIKEAAKLTH 469
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 56/89 (62%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I F+N+ RY+ + P++L N++ I GE IGIVGR+G+GKS+L + R +GQ+
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 63
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFN 525
ID D+A + LR ++ V+ QD VL N
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQDNVLLN 92
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 518 PQDPVLFN------------GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL 565
P PV+ + GIVGR+G+GKS+L + R +GQ+ ID D+A +
Sbjct: 15 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADP 74
Query: 566 ETLRSRLSVIPQDPVLFNGTIRYNL 590
LR ++ V+ QD VL N +I N+
Sbjct: 75 NWLRRQVGVVLQDNVLLNRSIIDNI 99
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 56/89 (62%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I F+N+ RY+ + P++L N++ I GE IGIVGR+G+GKS+L + R +GQ+
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFN 525
ID D+A + LR ++ V+ QD VL N
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLN 96
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 518 PQDPVLFN------------GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL 565
P PV+ + GIVGR+G+GKS+L + R +GQ+ ID D+A +
Sbjct: 19 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADP 78
Query: 566 ETLRSRLSVIPQDPVLFNGTIRYNL 590
LR ++ V+ QD VL N +I N+
Sbjct: 79 NWLRRQVGVVLQDNVLLNRSIIDNI 103
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 56/89 (62%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I F+N+ RY+ + P++L N++ I GE IGIVGR+G+GKS+L + R +GQ+
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFN 525
ID D+A + LR ++ V+ QD VL N
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLN 90
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 518 PQDPVLFN------------GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL 565
P PV+ + GIVGR+G+GKS+L + R +GQ+ ID D+A +
Sbjct: 13 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADP 72
Query: 566 ETLRSRLSVIPQDPVLFNGTIRYNL 590
LR ++ V+ QD VL N +I N+
Sbjct: 73 NWLRRQVGVVLQDNVLLNRSIIDNI 97
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 56/89 (62%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I F+N+ RY+ + P++L N++ I GE IGIVGR+G+GKS+L + R +GQ+
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFN 525
ID D+A + LR ++ V+ QD VL N
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLN 96
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 518 PQDPVLFN------------GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL 565
P PV+ + GIVGR+G+GKS+L + R +GQ+ ID D+A +
Sbjct: 19 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADP 78
Query: 566 ETLRSRLSVIPQDPVLFNGTIRYNL 590
LR ++ V+ QD VL N +I N+
Sbjct: 79 NWLRRQVGVVLQDNVLLNRSIIDNI 103
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 56/89 (62%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I F+N+ RY+ + P++L N++ I GE IGIVGR+G+GKS+L + R +GQ+
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFN 525
ID D+A + LR ++ V+ QD VL N
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLN 90
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 518 PQDPVLFN------------GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL 565
P PV+ + GIVGR+G+GKS+L + R +GQ+ ID D+A +
Sbjct: 13 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADP 72
Query: 566 ETLRSRLSVIPQDPVLFNGTIRYNL 590
LR ++ V+ QD VL N +I N+
Sbjct: 73 NWLRRQVGVVLQDNVLLNRSIIDNI 97
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 56/89 (62%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I F+N+ RY+ + P++L N++ I GE IGIVGR+G+GKS+L + R +GQ+
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFN 525
ID D+A + LR ++ V+ QD VL N
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLN 96
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 518 PQDPVLFN------------GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL 565
P PV+ + GIVGR+G+GKS+L + R +GQ+ ID D+A +
Sbjct: 19 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADP 78
Query: 566 ETLRSRLSVIPQDPVLFNGTIRYNL 590
LR ++ V+ QD VL N +I N+
Sbjct: 79 NWLRRQVGVVLQDNVLLNRSIIDNI 103
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 55/89 (61%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I F+N+ RY+ + P++L N++ I GE IGIVGR G+GKS+L + R +GQ+
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVL 63
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFN 525
ID D+A + LR ++ V+ QD VL N
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQDNVLLN 92
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 518 PQDPVLFN------------GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL 565
P PV+ + GIVGR G+GKS+L + R +GQ+ ID D+A +
Sbjct: 15 PDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADP 74
Query: 566 ETLRSRLSVIPQDPVLFNGTIRYNL 590
LR ++ V+ QD VL N +I N+
Sbjct: 75 NWLRRQVGVVLQDNVLLNRSIIDNI 99
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 67/125 (53%), Gaps = 9/125 (7%)
Query: 425 KVKLADWPRQGTIKFKNVSLRY--RDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLV 482
K D +G I +NV Y R + P +L ++ R+N G+ + +VG +G GKS+++
Sbjct: 404 KAGRKDMKIKGDITVENVHFTYPSRPDVP-ILRGMNLRVNAGQTVALVGSSGCGKSTIIS 462
Query: 483 ALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV------GRTGAGKS 536
L R ++ G+I ID D+ + LE LR ++V+ Q+P LFN + G+ G +
Sbjct: 463 LLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITRE 522
Query: 537 SLLVA 541
++ A
Sbjct: 523 EMVAA 527
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 435 GTIKFKNVSLRYRDNWPL-VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493
G + FKNV Y + + +L +SF + G+ + +VG +G GKS+++ L R + G
Sbjct: 1075 GKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGG 1134
Query: 494 QIKIDDFDIASVELETLRSRLSVIPQDPVLFN 525
+I ID +I ++ E RS+++++ Q+P LF+
Sbjct: 1135 EIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD 1166
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 65/112 (58%), Gaps = 5/112 (4%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
+VG +G GKS+++ L R ++ G+I ID D+ + LE LR ++V+ Q+P LFN TI
Sbjct: 449 LVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTI 508
Query: 587 RYNLDPFGRCHDT--ELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGE 634
N+ G+ T E+ A + ++ + + T+ + ++ V +G QLS G+
Sbjct: 509 EENI-SLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQ 559
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 8/92 (8%)
Query: 506 ELETLRS-RLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE 564
E+E L+ SV P + +VG +G GKS+++ L R + G+I ID +I ++
Sbjct: 1091 EIEILKGLSFSVEPGQTL---ALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLN 1147
Query: 565 LETLRSRLSVIPQDPVLFNGTIR----YNLDP 592
E RS+++++ Q+P LF+ +I Y LDP
Sbjct: 1148 PEHTRSQIAIVSQEPTLFDCSIAENIIYGLDP 1179
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 8/120 (6%)
Query: 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
G ++F+NV+ Y L N++ +I G+ + +VGR+G+GKS++ + R ++ G
Sbjct: 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH 399
Query: 495 IKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIK 554
I +D D+ L +LR++++++ Q+ LFN V +A R E S QI+
Sbjct: 400 ILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANN--------IAYARTEEYSREQIE 451
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 63/115 (54%), Gaps = 5/115 (4%)
Query: 486 RLVELSSGQIKIDD--FDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALF 543
R+++ ++G ++ + F E+ LR+ IP + +VGR+G+GKS++ +
Sbjct: 333 RVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTV--ALVGRSGSGKSTIASLIT 390
Query: 544 RLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHD 598
R ++ G I +D D+ L +LR++++++ Q+ LFN T+ N+ + R +
Sbjct: 391 RFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNI-AYARTEE 444
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 65/120 (54%), Gaps = 8/120 (6%)
Query: 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
G ++F+NV+ Y L N++ +I G+ + +VGR+G+GKS++ + R ++ G+
Sbjct: 340 GDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGE 399
Query: 495 IKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIK 554
I +D D+ L +LR++++++ Q+ LFN V +A R + S QI+
Sbjct: 400 ILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANN--------IAYARTEQYSREQIE 451
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 61/107 (57%), Gaps = 4/107 (3%)
Query: 486 RLVELSSGQIKIDD--FDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALF 543
R++E ++G ++ + F ++ LR+ IP + +VGR+G+GKS++ +
Sbjct: 333 RVIERATGDVEFRNVTFTYPGRDVPALRNINLKIPAGKTV--ALVGRSGSGKSTIASLIT 390
Query: 544 RLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNL 590
R ++ G+I +D D+ L +LR++++++ Q+ LFN T+ N+
Sbjct: 391 RFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNI 437
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 53/94 (56%)
Query: 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
G + K+V+ Y+ L++VSF I G+ + +VGR+G+GKS++ R ++ SG
Sbjct: 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGS 399
Query: 495 IKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV 528
I +D D+ +L LR +++ Q+ LFN +
Sbjct: 400 ICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTI 433
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 8/153 (5%)
Query: 488 VELSSGQIKIDD--FDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRL 545
E +G++ + D F E L IPQ + +VGR+G+GKS++ R
Sbjct: 335 AERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTV--ALVGRSGSGKSTIANLFTRF 392
Query: 546 VELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNL--DPFGRCHDTELWD 603
++ SG I +D D+ +L LR +++ Q+ LFN TI N+ G ++
Sbjct: 393 YDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQ 452
Query: 604 ALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGE 634
A ++H + M LD+ + G LS G+
Sbjct: 453 AARQAHAMEFIENMPQGLDTVIGENGTSLSGGQ 485
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 434 QGTIKFKNVSLRYRDNWPL-VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS 492
QG ++FKN+ Y + +L ++ ++ G+ + +VG +G GKS+ + + RL +
Sbjct: 385 QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLD 444
Query: 493 GQIKIDDFDIASVELETLRSRLSVIPQDPVLF 524
G + ID DI ++ + LR + V+ Q+PVLF
Sbjct: 445 GMVSIDGQDIRTINVRYLREIIGVVSQEPVLF 476
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 56/94 (59%), Gaps = 3/94 (3%)
Query: 434 QGTIKFKNVSLRY--RDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS 491
+G ++F V Y R + P VL +S + G+ + +VG +G GKS+++ L R +
Sbjct: 1028 EGNVQFSGVVFNYPTRPSIP-VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM 1086
Query: 492 SGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 525
+G + +D +I + ++ LR++L ++ Q+P+LF+
Sbjct: 1087 AGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD 1120
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 64/112 (57%), Gaps = 5/112 (4%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
+VG +G GKS+ + + RL + G + ID DI ++ + LR + V+ Q+PVLF TI
Sbjct: 421 LVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTI 480
Query: 587 RYNLDPFGRCHDT--ELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGE 634
N+ +GR T E+ A+++++ ++ + + D+ V +G QLS G+
Sbjct: 481 AENI-RYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQ 531
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 66/114 (57%), Gaps = 7/114 (6%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
+VG +G GKS+++ L R + +G + +D +I + ++ LR++L ++ Q+P+LF+ +I
Sbjct: 1064 LVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSI 1123
Query: 587 RYNLDPFGRCHD----TELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGE 634
N+ +G E+ A +++++ + ++ K ++ V +G QLS G+
Sbjct: 1124 AENI-AYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQ 1176
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 434 QGTIKFKNVSLRYRDNWPL-VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS 492
QG ++FKN+ Y + +L ++ ++ G+ + +VG +G GKS+ + + RL +
Sbjct: 385 QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLD 444
Query: 493 GQIKIDDFDIASVELETLRSRLSVIPQDPVLF 524
G + ID DI ++ + LR + V+ Q+PVLF
Sbjct: 445 GMVSIDGQDIRTINVRYLREIIGVVSQEPVLF 476
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 56/94 (59%), Gaps = 3/94 (3%)
Query: 434 QGTIKFKNVSLRY--RDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS 491
+G ++F V Y R + P VL +S + G+ + +VG +G GKS+++ L R +
Sbjct: 1028 EGNVQFSGVVFNYPTRPSIP-VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM 1086
Query: 492 SGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 525
+G + +D +I + ++ LR++L ++ Q+P+LF+
Sbjct: 1087 AGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD 1120
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 64/112 (57%), Gaps = 5/112 (4%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
+VG +G GKS+ + + RL + G + ID DI ++ + LR + V+ Q+PVLF TI
Sbjct: 421 LVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTI 480
Query: 587 RYNLDPFGRCHDT--ELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGE 634
N+ +GR T E+ A+++++ ++ + + D+ V +G QLS G+
Sbjct: 481 AENI-RYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQ 531
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 66/114 (57%), Gaps = 7/114 (6%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
+VG +G GKS+++ L R + +G + +D +I + ++ LR++L ++ Q+P+LF+ +I
Sbjct: 1064 LVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSI 1123
Query: 587 RYNLDPFGRCHD----TELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGE 634
N+ +G E+ A +++++ + ++ K ++ V +G QLS G+
Sbjct: 1124 AENI-AYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQ 1176
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 434 QGTIKFKNVSLRY--RDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS 491
QG ++FKNV Y R P + + S I G +VG +G+GKS++L L RL + +
Sbjct: 339 QGALEFKNVHFAYPARPEVP-IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA 397
Query: 492 SGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 525
SG I +D DI + LRS++ + Q+P+LF+
Sbjct: 398 SGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS 431
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIP 576
IP V +VG +G+GKS++L L RL + +SG I +D DI + LRS++ +
Sbjct: 367 IPSGSV--TALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVS 424
Query: 577 QDPVLFNGTIRYNL 590
Q+P+LF+ +I N+
Sbjct: 425 QEPILFSCSIAENI 438
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 434 QGTIKFKNVSLRY--RDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS 491
QG ++FKNV Y R P + + S I G +VG +G+GKS++L L RL + +
Sbjct: 370 QGALEFKNVHFAYPARPEVP-IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA 428
Query: 492 SGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 525
SG I +D DI + LRS++ + Q+P+LF+
Sbjct: 429 SGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS 462
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIP 576
IP V +VG +G+GKS++L L RL + +SG I +D DI + LRS++ +
Sbjct: 398 IPSGSV--TALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVS 455
Query: 577 QDPVLFNGTIRYNL 590
Q+P+LF+ +I N+
Sbjct: 456 QEPILFSCSIAENI 469
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 65/112 (58%), Gaps = 6/112 (5%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
+VG TG+GKS++ L+R + + G IKI ++ ++RS + ++PQD +LFN TI
Sbjct: 51 LVGHTGSGKSTIAKLLYRFYD-AEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETI 109
Query: 587 RYNLDPFGR--CHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGE 634
+YN+ +G+ D E+ A + + L + + K D+ V +G +LS GE
Sbjct: 110 KYNI-LYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGE 160
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 436 TIKFKNVSLRY-RDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
I+F +V+ Y + L +++F I G +VG TG+GKS++ L+R + + G
Sbjct: 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-AEGD 75
Query: 495 IKIDDFDIASVELETLRSRLSVIPQDPVLFN 525
IKI ++ ++RS + ++PQD +LFN
Sbjct: 76 IKIGGKNVNKYNRNSIRSIIGIVPQDTILFN 106
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 62/111 (55%), Gaps = 4/111 (3%)
Query: 528 VGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIR 587
G +G GKS++ L R + ++G+I ID I ++ LE RS++ + QD + GTIR
Sbjct: 34 AGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIR 93
Query: 588 YNL--DPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGE 634
NL G D +LW L+ + +S V M +L+++V +G ++S G+
Sbjct: 94 ENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQ 144
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%)
Query: 448 DNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL 507
D+ +L ++SF I G +G GKS++ L R + ++G+I ID I ++ L
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISL 71
Query: 508 ETLRSRLSVIPQDPVLFNGIV 528
E RS++ + QD + G +
Sbjct: 72 ENWRSQIGFVSQDSAIMAGTI 92
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 434 QGTIKFKNVSLRYRDNWP--LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS 491
+G ++F++VS Y N P LVL ++F + GE +VG G+GKS++ L L + +
Sbjct: 12 EGLVQFQDVSFAY-PNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 70
Query: 492 SGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 525
GQ+ +D + E L +++ + Q+P +F
Sbjct: 71 GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG 104
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Query: 521 PVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV 580
P +VG G+GKS++ L L + + GQ+ +D + E L +++ + Q+P
Sbjct: 42 PGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQ 101
Query: 581 LFNGTIRYNLDPFGRCHD---TELWDALEKSHLKSKVVTMRSKLDSDVQ--GDQLSLGE 634
+F +++ N+ +G E+ A KS S + + D++V G QLS G+
Sbjct: 102 VFGRSLQENIA-YGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQ 159
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 428 LADWPRQGTIKFKNVSLRYRDNWP--LVLANVSFRINHGENIGIVGRTGAGKSSLLVALF 485
LA +G +KF++VS Y N P VL ++F + G+ +VG G+GKS++ L
Sbjct: 8 LAPLNMKGLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQ 66
Query: 486 RLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 525
L + + G++ +D + + L ++++ + Q+P+LF
Sbjct: 67 NLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG 106
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 38/70 (54%)
Query: 521 PVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV 580
P +VG G+GKS++ L L + + G++ +D + + L ++++ + Q+P+
Sbjct: 44 PGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPL 103
Query: 581 LFNGTIRYNL 590
LF + R N+
Sbjct: 104 LFGRSFRENI 113
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 428 LADWPRQGTIKFKNVSLRYRDNWP--LVLANVSFRINHGENIGIVGRTGAGKSSLLVALF 485
LA +G +KF++VS Y N P VL ++F + G+ +VG G+GKS++ L
Sbjct: 8 LAPLNMKGLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQ 66
Query: 486 RLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 525
L + + G++ +D + + L ++++ + Q+P+LF
Sbjct: 67 NLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG 106
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 38/70 (54%)
Query: 521 PVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV 580
P +VG G+GKS++ L L + + G++ +D + + L ++++ + Q+P+
Sbjct: 44 PGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPL 103
Query: 581 LFNGTIRYNL 590
LF + R N+
Sbjct: 104 LFGRSFRENI 113
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 428 LADWPRQGTIKFKNVSLRYRDNWP--LVLANVSFRINHGENIGIVGRTGAGKSSLLVALF 485
LA +G +KF++VS Y N P VL ++F + G+ +VG G+GKS++ L
Sbjct: 8 LAPLNMKGLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQ 66
Query: 486 RLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 525
L + + G++ +D + + L ++++ + Q+P+LF
Sbjct: 67 NLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG 106
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 38/70 (54%)
Query: 521 PVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV 580
P +VG G+GKS++ L L + + G++ +D + + L ++++ + Q+P+
Sbjct: 44 PGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPL 103
Query: 581 LFNGTIRYNL 590
LF + R N+
Sbjct: 104 LFGRSFRENI 113
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 37/57 (64%)
Query: 440 KNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+NV+ + + VL +++F+I G+ + + G TGAGK+SLL+ + +E S G+IK
Sbjct: 22 ENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 78
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 14/72 (19%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
+ G TGAGK+SLL+ + +E S G+IK R+S Q + GTI
Sbjct: 51 VAGSTGAGKTSLLMMIMGELEPSEGKIK-------------HSGRISFCSQFSWIMPGTI 97
Query: 587 RYNLDPFGRCHD 598
+ N+ FG +D
Sbjct: 98 KENI-IFGVSYD 108
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 37/57 (64%)
Query: 440 KNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+NV+ + + VL +++F+I G+ + + G TGAGK+SLL+ + +E S G+IK
Sbjct: 10 ENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 66
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 14/72 (19%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
+ G TGAGK+SLL+ + +E S G+IK R+S Q + GTI
Sbjct: 39 VAGSTGAGKTSLLMMIMGELEPSEGKIK-------------HSGRISFCSQFSWIMPGTI 85
Query: 587 RYNLDPFGRCHD 598
+ N+ FG +D
Sbjct: 86 KENI-IFGVSYD 96
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 37/57 (64%)
Query: 440 KNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+NV+ + + VL +++F+I G+ + + G TGAGK+SLL+ + +E S G+IK
Sbjct: 10 ENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 66
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIK 554
+ G TGAGK+SLL+ + +E S G+IK
Sbjct: 39 VAGSTGAGKTSLLMMIMGELEPSEGKIK 66
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Query: 440 KNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 499
KNVS ++ + L NV+ I +GE GI+G +GAGK++ + + L S+G++ DD
Sbjct: 7 KNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDD 66
Query: 500 FDIASVELETLRSRLSVIPQD 520
+AS +L V P+D
Sbjct: 67 RLVAS------NGKLIVPPED 81
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Query: 440 KNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 499
KNVS ++ + L NV+ I +GE GI+G +GAGK++ + + L S+G++ DD
Sbjct: 7 KNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDD 66
Query: 500 FDIASVELETLRSRLSVIPQD 520
+AS +L V P+D
Sbjct: 67 RLVAS------NGKLIVPPED 81
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 435 GTIKFKNVSLRYRDNWPL---VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS 491
G I+ NVS + PL L NVS IN GE + + G TG+GKS+LL + L+E +
Sbjct: 3 GRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT 62
Query: 492 SGQIKID 498
SG + D
Sbjct: 63 SGDVLYD 69
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKID 556
+ G TG+GKS+LL + L+E +SG + D
Sbjct: 40 VAGNTGSGKSTLLQIVAGLIEPTSGDVLYD 69
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 437 IKFKNVSLRYRDNWPLV--LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
IK KNV+ Y+ ++ L NV+ I GE + I+G +G+GKS++L + L + + G+
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 495 IKIDDF---DIASVELETLR 511
+ ID+ D+ EL +R
Sbjct: 62 VYIDNIKTNDLDDDELTKIR 81
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
VL +++F+I G+ + + G TGAGK+SLL+ + +E S G+IK
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 96
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIK 554
+ G TGAGK+SLL+ + +E S G+IK
Sbjct: 69 VAGSTGAGKTSLLMMIMGELEPSEGKIK 96
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
VL +++F+I G+ + + G TGAGK+SLL+ + +E S G+IK
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 96
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIK 554
+ G TGAGK+SLL+ + +E S G+IK
Sbjct: 69 VAGSTGAGKTSLLMMIMGELEPSEGKIK 96
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 437 IKFKNVSLRYRDNWPL---VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493
I+ NVS + PL L NVS IN GE + + G TG+GKS+LL + L+E +SG
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 494 QIKID 498
+ D
Sbjct: 63 DVLYD 67
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKID 556
+ G TG+GKS+LL + L+E +SG + D
Sbjct: 38 VAGNTGSGKSTLLQIVAGLIEPTSGDVLYD 67
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
VL +++F+I G+ + + G TGAGK+SLL+ + +E S G+IK
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 96
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIK 554
+ G TGAGK+SLL+ + +E S G+IK
Sbjct: 69 VAGSTGAGKTSLLMMIMGELEPSEGKIK 96
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
VL +++F+I G+ + + G TGAGK+SLL+ + +E S G+IK
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 96
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 13/64 (20%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
+ G TGAGK+SLL+ + +E S G+IK R+S Q+ + GTI
Sbjct: 69 VAGSTGAGKTSLLMMIMGELEPSEGKIK-------------HSGRISFCSQNSWIMPGTI 115
Query: 587 RYNL 590
+ N+
Sbjct: 116 KENI 119
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
VL +++F+I G+ + + G TGAGK+SLL+ + +E S G+IK
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 96
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 13/64 (20%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
+ G TGAGK+SLL+ + +E S G+IK R+S Q+ + GTI
Sbjct: 69 VAGSTGAGKTSLLMMIMGELEPSEGKIK-------------HSGRISFCSQNSWIMPGTI 115
Query: 587 RYNL 590
+ N+
Sbjct: 116 KENI 119
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 437 IKFKNVSLRYRDNWPLV--LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
+K KNV+ Y+ ++ L NV+ I GE + I+G +G+GKS++L + L + + G+
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 495 IKIDDF---DIASVELETLR 511
+ ID+ D+ EL +R
Sbjct: 62 VYIDNIKTNDLDDDELTKIR 81
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 421 FGQV--KVKLADWPRQGTIKFKNVSLRYRD--NWPLVLANVSFRINHGENIGIVGRTGAG 476
FG++ KV+ ++ R+ + NVS + P VL N++ I GE + I G TG+G
Sbjct: 18 FGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNP-VLKNINLNIEKGEMLAITGSTGSG 76
Query: 477 KSSLLVALFRLVELSSGQIK 496
K+SLL+ + +E S G IK
Sbjct: 77 KTSLLMLILGELEASEGIIK 96
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 14/102 (13%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
I G TG+GK+SLL+ + +E S G IK R+S Q + GTI
Sbjct: 69 ITGSTGSGKTSLLMLILGELEASEGIIK-------------HSGRVSFCSQFSWIMPGTI 115
Query: 587 RYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGD 628
+ N+ FG +D + ++ K+ + +T ++ D+ V G+
Sbjct: 116 KENI-IFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGE 156
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 421 FGQV--KVKLADWPRQGTIKFKNVSLRYRD--NWPLVLANVSFRINHGENIGIVGRTGAG 476
FG++ KV+ ++ R+ + NVS + P VL N++ I GE + I G TG+G
Sbjct: 18 FGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNP-VLKNINLNIEKGEMLAITGSTGSG 76
Query: 477 KSSLLVALFRLVELSSGQIK 496
K+SLL+ + +E S G IK
Sbjct: 77 KTSLLMLILGELEASEGIIK 96
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 421 FGQV--KVKLADWPRQGTIKFKNVSLRYRD--NWPLVLANVSFRINHGENIGIVGRTGAG 476
FG++ KV+ ++ R+ + NVS + P VL N++ I GE + I G TG+G
Sbjct: 18 FGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNP-VLKNINLNIEKGEMLAITGSTGSG 76
Query: 477 KSSLLVALFRLVELSSGQIK 496
K+SLL+ + +E S G IK
Sbjct: 77 KTSLLMLILGELEASEGIIK 96
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 421 FGQV--KVKLADWPRQGTIKFKNVSLRYRD--NWPLVLANVSFRINHGENIGIVGRTGAG 476
FG++ KV+ ++ R+ + NVS + P VL N++ I GE + I G TG+G
Sbjct: 18 FGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNP-VLKNINLNIEKGEMLAITGSTGSG 76
Query: 477 KSSLLVALFRLVELSSGQIK 496
K+SLL+ + +E S G IK
Sbjct: 77 KTSLLMLILGELEASEGIIK 96
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 437 IKFKNVSLRYRDNWPLV--LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
IK KNV+ Y+ ++ L NV+ I GE + I G +G+GKS+ L + L + + G+
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 495 IKIDDF---DIASVELETLR 511
+ ID+ D+ EL +R
Sbjct: 62 VYIDNIKTNDLDDDELTKIR 81
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 443 SLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 502
LR R +L +SF I GE G++G GAGK++ L + L++ SSG + + ++
Sbjct: 20 DLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNV 79
Query: 503 ASVELETLRSRLSVIPQDPVLFNGIVG 529
E +R +S +P++ + + G
Sbjct: 80 VE-EPHEVRKLISYLPEEAGAYRNMQG 105
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 421 FGQV--KVKLADWPRQGTIKFKNVSLRYRD--NWPLVLANVSFRINHGENIGIVGRTGAG 476
FG++ KV+ ++ R+ NVS + P VL N++ I GE + I G TG+G
Sbjct: 18 FGELLEKVQQSNGDRKHXSDENNVSFSHLCLVGNP-VLKNINLNIEKGEMLAITGSTGSG 76
Query: 477 KSSLLVALFRLVELSSGQIK 496
K+SLL+ + +E S G IK
Sbjct: 77 KTSLLMLILGELEASEGIIK 96
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 14/102 (13%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
I G TG+GK+SLL+ + +E S G IK R+S Q + GTI
Sbjct: 69 ITGSTGSGKTSLLMLILGELEASEGIIK-------------HSGRVSFCSQFSWIMPGTI 115
Query: 587 RYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGD 628
+ N+ FG +D + ++ K+ + +T ++ D+ V G+
Sbjct: 116 KENI-IFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGE 156
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
IK +N+ ++ N+ L N++ +I GE + ++G +G+GKS+LL + + + +SG+I
Sbjct: 4 IKLENIVKKF-GNF-TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIY 61
Query: 497 IDDFDIASV 505
D+ D+ +
Sbjct: 62 FDEKDVTEL 70
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 26/40 (65%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV 563
F ++G +G+GKS+LL + + + +SG+I D+ D+ +
Sbjct: 31 FMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTEL 70
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
+I +N + + + P L ++F I G + +VG+ G GKSSLL AL ++ G +
Sbjct: 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62
Query: 496 KI 497
I
Sbjct: 63 AI 64
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 25/83 (30%)
Query: 520 DPVLFNGI------------VGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET 567
DP NGI VG+ G GKSSLL AL ++ G + I
Sbjct: 17 DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAI------------ 64
Query: 568 LRSRLSVIPQDPVLFNGTIRYNL 590
+ ++ +PQ + N ++R N+
Sbjct: 65 -KGSVAYVPQQAWIQNDSLRENI 86
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+K + ++ Y D L ++ I GE I+G G GKS+L +++ SSG+I
Sbjct: 8 LKVEELNYNYSDGT-HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL 66
Query: 497 IDD--FDIASVELETLRSRLSVIPQDP 521
D+ D + + LR + ++ QDP
Sbjct: 67 FDNKPIDYSRKGIMKLRESIGIVFQDP 93
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDD--FDIASVELETLRSRLSVIPQDP 579
I+G G GKS+L +++ SSG+I D+ D + + LR + ++ QDP
Sbjct: 39 ILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDP 93
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 36.2 bits (82), Expect = 0.056, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELET 509
+L +S + GE + I+G +G+GKS+LL L L + G++ ++ ++ EL
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 510 LRSRL--------SVIPQDPVLFNGIVGRTGAGK 535
LR+R +IP+ L N IV GK
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGK 112
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 437 IKFKNVSLRYRDNWPLVLA--NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
IK N++ + + A NVS + G+ G++G +GAGKS+L+ + L + G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 495 IKIDDFDIASV---ELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVAL 542
+ +D ++ ++ EL R ++ +I Q FN + RT G +L + L
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQH---FNLLSSRTVFGNVALPLEL 109
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 437 IKFKNVSLRYRDNWPLVLA--NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
IK N++ + + A NVS + G+ G++G +GAGKS+L+ + L + G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 495 IKIDDFDIASV---ELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVAL 542
+ +D ++ ++ EL R ++ +I Q FN + RT G +L + L
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQH---FNLLSSRTVFGNVALPLEL 132
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 457 VSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 499
VSF + GE + ++G +G GK++ L+ L + + +SG+I DD
Sbjct: 22 VSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDD 64
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 430 DWPRQGTIKFKNVSLRYRDNWPLVLA--NVSFRINHGENIGIVGRTGAGKSSLLVALFRL 487
D + IK N++ + + A NVS + G+ G++G +GAGKS+L+ + L
Sbjct: 18 DDDDKHXIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL 77
Query: 488 VELSSGQIKIDDFDIASV-ELETLRSRLSV 516
+ G + +D ++ ++ E E ++R +
Sbjct: 78 ERPTEGSVLVDGQELTTLSESELTKARRQI 107
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 449 NWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI--ASVE 506
N P VL ++S ++ GE + I+G +G GK++LL L + SG+I + I +
Sbjct: 16 NTP-VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTN 74
Query: 507 LETLRSRLSVIPQDPVLF 524
L RL + Q+ VLF
Sbjct: 75 LPVRERRLGYLVQEGVLF 92
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE--LETL 510
VL ++ I GE + ++G +G+GKS+ L L L + G+I ID ++ + + L +
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 511 RSRLSVI 517
R + ++
Sbjct: 78 REEVGMV 84
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE--LETL 510
VL ++ I GE + ++G +G+GKS+ L L L + G+I ID ++ + + L +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 511 RSRLSVI 517
R + ++
Sbjct: 99 REEVGMV 105
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%)
Query: 444 LRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA 503
L Y ++ +VS I GE + I+G GAGKS+LL L + S G+ + ++
Sbjct: 17 LHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLN 76
Query: 504 SVELETLRSRLSVIPQ 519
S + + L +V+ Q
Sbjct: 77 SWQPKALARTRAVMRQ 92
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 458 SFRINHGENIG-----IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS 512
+FR+N +G ++G TGAGKS L + +V+ G+++++ DI + E R
Sbjct: 13 NFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RR 70
Query: 513 RLSVIPQDPVLF 524
+ +PQD LF
Sbjct: 71 GIGFVPQDYALF 82
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF 582
++G TGAGKS L + +V+ G+++++ DI + E R + +PQD LF
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALF 82
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS 512
L VS +N G+ I+G G+GKS+L+ + ++ G++ ++ DI + E L
Sbjct: 22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH 81
Query: 513 ----RLSVIPQD----PVLFNGIVGRTGAGKSSL 538
R PQ VL N ++G G+S L
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPL 115
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE 506
L VS +N G+ I+G G+GKS+L+ + ++ G++ ++ DI + E
Sbjct: 22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKE 75
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 456 NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
VSF+I GE +G++G +G+GK+++L + L + G +
Sbjct: 33 GVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+ +VS RY N VL +V+ G+ +VG+ G+GK++LL L L+ ++G+I
Sbjct: 12 IELNSVSFRY--NGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL-AAAGEIF 68
Query: 497 ID 498
+D
Sbjct: 69 LD 70
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE 506
+ ++S I GE + ++G +G GK++ L + L E + GQI I+D +A E
Sbjct: 21 AVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPE 74
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL-R 511
+ + ++ G+ + ++G GAGK++ L A+ LV G+I + DI + + R
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR 80
Query: 512 SRLSVIPQDPVLF 524
++++P+ +F
Sbjct: 81 XGIALVPEGRRIF 93
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 34/63 (53%)
Query: 433 RQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS 492
++ +K N+ +Y + +++F+ + I ++G GAGKS+L+ L + +S
Sbjct: 668 QKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTS 727
Query: 493 GQI 495
G++
Sbjct: 728 GEV 730
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 457 VSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKI 497
++F +N G+ + ++G+ G GKS+LL L + G+I++
Sbjct: 24 LNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV 64
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 461 INHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKID 498
I GE IGIVG G GK++ + L + E + G+I+ D
Sbjct: 309 IKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWD 346
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 33/63 (52%)
Query: 433 RQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS 492
++ +K N +Y + +++F+ + I ++G GAGKS+L+ L + +S
Sbjct: 662 QKAIVKVTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTS 721
Query: 493 GQI 495
G++
Sbjct: 722 GEV 724
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 454 LANVSFRINHGENIGIVGRTGAGKSSL--LVALFRLVELSSGQIKIDDFDIASVELE 508
L N+S ++ GE I+G TGAGK+ L+A F + + SG+I +D D+ + E
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD--SGRILLDGKDVTDLSPE 70
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 33/63 (52%)
Query: 433 RQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS 492
++ +K N +Y + +++F+ + I ++G GAGKS+L+ L + +S
Sbjct: 668 QKAIVKVTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTS 727
Query: 493 GQI 495
G++
Sbjct: 728 GEV 730
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
Length = 172
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 462 NHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516
+HG + I GR AGKSSLL AL +G+ DIA + LR + +
Sbjct: 2 SHGXKVVIAGRPNAGKSSLLNAL-------AGREAAIVTDIAGTTRDVLREHIHI 49
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 456 NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE 506
+S + GE + ++G +G GK++ L + L E S GQI I D +A E
Sbjct: 21 EMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPE 71
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 461 INHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKID 498
I GE IGIVG G GK++ + L + E + G+++ D
Sbjct: 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD 416
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 461 INHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKID 498
I GE IGIVG G GK++ + L + E + G+++ D
Sbjct: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD 402
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS 512
L VS + G+ I+G G+GKS+L+ + ++ G++ ++ DI + E L
Sbjct: 22 ALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH 81
Query: 513 ----RLSVIPQD----PVLFNGIVGRTGAGKSSL 538
R PQ VL N ++G G+S L
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPL 115
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 462 NHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516
+HG + I GR AGKSSLL AL +G+ DIA + LR + +
Sbjct: 2 SHGMKVVIAGRPNAGKSSLLNAL-------AGREAAIVTDIAGTTRDVLREHIHI 49
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 437 IKFKNV--SLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
I+ KNV +L + L N++ +N GE + I+G G+GK++LL A+ L+ SG
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPY-SGN 59
Query: 495 IKIDDFDIASV 505
I I+ ++ +
Sbjct: 60 IFINGMEVRKI 70
>pdb|3KYA|A Chain A, Crystal Structure Of Putative Phosphatase (Np_812416.1)
From Bacteroides Thetaiotaomicron Vpi-5482 At 1.77 A
Resolution
Length = 496
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 18/76 (23%)
Query: 391 ETELNFLAVERINNCSKKLVPE-------GRGPITSEFGQVKVKLADWPRQGTI--KFKN 441
E E +F V+R+N C +K+ PE GRG TS LAD + GT +
Sbjct: 388 EEEYDFYFVDRLNFCVRKVTPEGIVSTYAGRGASTS--------LADGNQWGTDDGDLRE 439
Query: 442 VSLRYRDNWPLVLANV 457
V+ R+RD LV +V
Sbjct: 440 VA-RFRDVSGLVYDDV 454
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.332 0.143 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,791,664
Number of Sequences: 62578
Number of extensions: 618549
Number of successful extensions: 2404
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2210
Number of HSP's gapped (non-prelim): 199
length of query: 677
length of database: 14,973,337
effective HSP length: 105
effective length of query: 572
effective length of database: 8,402,647
effective search space: 4806314084
effective search space used: 4806314084
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 55 (25.8 bits)