Query psy845
Match_columns 677
No_of_seqs 313 out of 2966
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 19:09:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy845.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/845hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0054|consensus 100.0 6.4E-81 1.4E-85 746.0 53.2 514 91-677 799-1352(1381)
2 KOG0058|consensus 100.0 1.3E-78 2.9E-83 682.1 52.7 434 174-677 204-681 (716)
3 KOG0055|consensus 100.0 1.2E-73 2.6E-78 671.1 56.3 432 179-677 732-1203(1228)
4 TIGR00957 MRP_assoc_pro multi 100.0 2.9E-73 6.3E-78 703.7 61.0 510 94-677 951-1498(1522)
5 COG2274 SunT ABC-type bacterio 100.0 2E-73 4.4E-78 656.3 53.2 448 161-677 197-686 (709)
6 PLN03130 ABC transporter C fam 100.0 1.1E-71 2.4E-76 690.7 61.7 509 94-677 900-1451(1622)
7 COG1132 MdlB ABC-type multidru 100.0 4.9E-70 1.1E-74 617.2 59.3 440 166-677 64-542 (567)
8 PLN03232 ABC transporter C fam 100.0 2.3E-70 5.1E-75 676.9 60.7 507 94-677 897-1448(1495)
9 PTZ00243 ABC transporter; Prov 100.0 7.4E-70 1.6E-74 673.2 61.9 514 94-677 947-1523(1560)
10 PRK11174 cysteine/glutathione 100.0 3E-68 6.5E-73 604.3 59.2 437 169-677 78-562 (588)
11 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 7.7E-68 1.7E-72 611.8 60.9 437 169-677 187-663 (686)
12 TIGR00958 3a01208 Conjugate Tr 100.0 2.3E-66 4.9E-71 602.5 68.8 439 168-677 215-692 (711)
13 TIGR01271 CFTR_protein cystic 100.0 8.4E-68 1.8E-72 653.7 59.7 436 179-677 950-1430(1490)
14 TIGR01193 bacteriocin_ABC ABC- 100.0 1.7E-67 3.7E-72 610.9 58.6 438 168-677 210-687 (708)
15 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 3E-67 6.4E-72 608.8 60.3 445 169-677 209-690 (710)
16 TIGR03375 type_I_sec_LssB type 100.0 4.5E-67 9.8E-72 606.1 60.4 438 171-677 204-678 (694)
17 PRK11176 lipid transporter ATP 100.0 4E-66 8.8E-71 585.9 61.4 437 170-677 81-557 (582)
18 PRK10790 putative multidrug tr 100.0 1.3E-65 2.7E-70 583.7 60.9 425 179-677 90-553 (592)
19 TIGR02868 CydC thiol reductant 100.0 2.3E-65 5.1E-70 573.9 58.0 418 171-657 70-498 (529)
20 PTZ00265 multidrug resistance 100.0 2E-65 4.2E-70 630.2 59.2 488 170-676 878-1440(1466)
21 TIGR02203 MsbA_lipidA lipid A 100.0 9.7E-65 2.1E-69 572.6 59.3 438 169-677 65-546 (571)
22 PRK11160 cysteine/glutathione 100.0 1.8E-64 3.8E-69 573.6 59.9 436 170-677 72-552 (574)
23 TIGR01846 type_I_sec_HlyB type 100.0 2.3E-64 4.9E-69 583.8 59.5 440 168-677 193-670 (694)
24 TIGR02857 CydD thiol reductant 100.0 2.8E-64 6.1E-69 565.2 58.4 434 167-671 57-529 (529)
25 KOG0055|consensus 100.0 4.1E-66 9E-71 607.6 41.0 424 186-677 103-566 (1228)
26 PRK13657 cyclic beta-1,2-gluca 100.0 4.3E-63 9.4E-68 562.8 58.6 426 182-677 84-548 (588)
27 TIGR02204 MsbA_rel ABC transpo 100.0 1.7E-62 3.8E-67 555.2 61.3 433 177-677 81-553 (576)
28 TIGR01842 type_I_sec_PrtD type 100.0 3.8E-62 8.3E-67 550.6 59.9 430 176-677 68-532 (544)
29 PRK10789 putative multidrug tr 100.0 5.4E-62 1.2E-66 552.6 57.6 438 169-677 51-528 (569)
30 TIGR01192 chvA glucan exporter 100.0 2.1E-61 4.7E-66 549.7 59.5 423 185-677 87-548 (585)
31 KOG0056|consensus 100.0 2.1E-64 4.5E-69 542.9 29.3 415 189-677 294-751 (790)
32 COG4988 CydD ABC-type transpor 100.0 1.8E-60 3.8E-65 527.2 55.9 446 162-677 44-533 (559)
33 KOG0057|consensus 100.0 5E-61 1.1E-65 525.7 44.6 423 179-677 99-564 (591)
34 TIGR01194 cyc_pep_trnsptr cycl 100.0 2.4E-59 5.2E-64 529.8 55.8 441 169-677 68-549 (555)
35 COG4987 CydC ABC-type transpor 100.0 3.3E-58 7.2E-63 503.2 52.0 397 211-677 119-551 (573)
36 PTZ00265 multidrug resistance 100.0 5.5E-58 1.2E-62 564.4 58.3 437 169-675 112-656 (1466)
37 COG5265 ATM1 ABC-type transpor 100.0 4.6E-59 1E-63 497.4 34.2 426 182-677 6-476 (497)
38 PRK10522 multidrug transporter 100.0 3.5E-54 7.5E-59 486.6 56.6 422 171-677 65-528 (547)
39 PLN03232 ABC transporter C fam 100.0 1.5E-54 3.3E-59 536.5 58.0 409 185-677 372-818 (1495)
40 PLN03130 ABC transporter C fam 100.0 3.9E-54 8.5E-59 534.5 59.5 406 187-677 374-818 (1622)
41 COG4618 ArpD ABC-type protease 100.0 9.8E-55 2.1E-59 472.6 43.9 432 174-676 79-549 (580)
42 TIGR00954 3a01203 Peroxysomal 100.0 2E-50 4.4E-55 465.7 55.0 440 161-673 146-653 (659)
43 TIGR00957 MRP_assoc_pro multi 100.0 2.3E-48 5E-53 482.2 59.3 407 188-677 392-840 (1522)
44 KOG0054|consensus 100.0 6E-47 1.3E-51 454.3 54.2 436 160-677 244-721 (1381)
45 TIGR01271 CFTR_protein cystic 100.0 1.3E-45 2.7E-50 456.9 57.0 426 163-677 127-626 (1490)
46 PTZ00243 ABC transporter; Prov 100.0 1E-44 2.3E-49 449.7 54.3 440 164-677 291-860 (1560)
47 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.1E-40 2.5E-45 347.9 17.2 184 435-677 1-215 (275)
48 PRK14257 phosphate ABC transpo 100.0 1.8E-37 3.9E-42 331.4 15.4 185 430-677 74-303 (329)
49 cd03244 ABCC_MRP_domain2 Domai 100.0 8.4E-37 1.8E-41 305.8 18.1 185 435-677 1-216 (221)
50 PRK10762 D-ribose transporter 100.0 5.5E-37 1.2E-41 343.4 15.7 232 436-677 4-474 (501)
51 COG4615 PvdE ABC-type sideroph 100.0 1E-33 2.3E-38 300.9 37.3 379 211-677 109-527 (546)
52 cd03288 ABCC_SUR2 The SUR doma 100.0 4E-36 8.8E-41 309.2 18.5 187 433-677 16-233 (257)
53 PRK09700 D-allose transporter 100.0 1.5E-36 3.3E-41 340.3 16.4 232 436-677 5-488 (510)
54 COG1135 AbcC ABC-type metal io 100.0 1.9E-36 4E-41 315.2 14.0 177 437-677 2-221 (339)
55 PRK11288 araG L-arabinose tran 100.0 4E-36 8.6E-41 336.4 17.3 232 436-677 4-475 (501)
56 COG1123 ATPase components of v 100.0 2.8E-36 6.1E-41 335.6 15.0 233 436-677 5-509 (539)
57 cd03252 ABCC_Hemolysin The ABC 100.0 8.3E-36 1.8E-40 302.0 16.8 183 437-677 1-215 (237)
58 COG1126 GlnQ ABC-type polar am 100.0 7E-36 1.5E-40 298.2 15.7 174 436-677 2-215 (240)
59 PRK13549 xylose transporter AT 100.0 6E-36 1.3E-40 335.4 16.2 232 436-677 5-484 (506)
60 PRK15439 autoinducer 2 ABC tra 100.0 1.6E-35 3.4E-40 332.6 16.7 232 436-677 11-482 (510)
61 cd03254 ABCC_Glucan_exporter_l 100.0 3.2E-35 6.9E-40 295.9 16.6 184 435-677 1-216 (229)
62 COG3839 MalK ABC-type sugar tr 100.0 1.8E-35 3.8E-40 315.3 15.3 171 436-677 3-213 (338)
63 cd03251 ABCC_MsbA MsbA is an e 100.0 4.8E-35 1E-39 295.6 17.2 183 437-677 1-215 (234)
64 COG1125 OpuBA ABC-type proline 100.0 1.4E-35 3E-40 301.6 12.0 172 437-677 2-215 (309)
65 cd03245 ABCC_bacteriocin_expor 100.0 1.2E-34 2.7E-39 289.9 17.9 185 435-677 1-217 (220)
66 COG4178 ABC-type uncharacteriz 100.0 2.2E-31 4.8E-36 299.8 46.0 457 111-651 46-537 (604)
67 cd03253 ABCC_ATM1_transporter 100.0 1E-34 2.3E-39 293.4 17.1 182 437-677 1-214 (236)
68 TIGR02633 xylG D-xylose ABC tr 100.0 6.8E-35 1.5E-39 326.1 16.4 231 437-677 2-482 (500)
69 COG3842 PotA ABC-type spermidi 100.0 5.6E-35 1.2E-39 312.9 14.7 172 435-677 4-216 (352)
70 cd03248 ABCC_TAP TAP, the Tran 100.0 1.9E-34 4.2E-39 290.0 16.1 185 434-676 9-226 (226)
71 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 2.5E-34 5.4E-39 291.3 16.6 183 437-677 1-216 (238)
72 cd03369 ABCC_NFT1 Domain 2 of 100.0 3.5E-34 7.6E-39 284.8 17.2 173 431-677 1-202 (207)
73 PRK15134 microcin C ABC transp 100.0 3.2E-34 6.9E-39 323.1 15.9 232 436-677 5-505 (529)
74 COG1116 TauB ABC-type nitrate/ 100.0 2.6E-34 5.7E-39 292.8 13.6 165 436-674 3-207 (248)
75 PRK10938 putative molybdenum t 100.0 2.2E-34 4.9E-39 321.2 14.3 230 437-677 4-482 (490)
76 TIGR00960 3a0501s02 Type II (G 100.0 2.9E-34 6.3E-39 286.9 13.4 176 437-676 2-216 (216)
77 COG3638 ABC-type phosphate/pho 100.0 2.7E-34 5.9E-39 289.8 13.0 177 436-677 3-227 (258)
78 COG1120 FepC ABC-type cobalami 100.0 5.2E-34 1.1E-38 294.2 15.1 173 436-677 2-218 (258)
79 PRK10982 galactose/methyl gala 100.0 4.2E-34 9.1E-39 319.2 15.5 229 439-677 1-470 (491)
80 COG2884 FtsE Predicted ATPase 100.0 1.7E-34 3.8E-39 283.1 10.2 176 437-677 2-216 (223)
81 COG1136 SalX ABC-type antimicr 100.0 1E-33 2.2E-38 286.9 16.0 176 437-676 2-220 (226)
82 TIGR03269 met_CoM_red_A2 methy 100.0 4.5E-34 9.7E-39 321.1 14.6 147 526-677 314-507 (520)
83 cd03250 ABCC_MRP_domain1 Domai 100.0 1.6E-33 3.4E-38 279.5 15.7 168 437-675 1-204 (204)
84 TIGR02314 ABC_MetN D-methionin 100.0 6.8E-34 1.5E-38 305.6 14.1 177 437-677 2-220 (343)
85 cd03261 ABC_Org_Solvent_Resist 100.0 9.6E-34 2.1E-38 286.9 14.1 175 437-677 1-216 (235)
86 COG1117 PstB ABC-type phosphat 100.0 3.2E-34 6.9E-39 285.6 10.1 180 435-677 6-227 (253)
87 cd03260 ABC_PstB_phosphate_tra 100.0 1.2E-33 2.7E-38 284.3 14.1 176 437-677 1-219 (227)
88 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.2E-33 2.6E-38 282.5 13.8 176 437-676 1-218 (218)
89 cd03290 ABCC_SUR1_N The SUR do 100.0 2.6E-33 5.7E-38 280.6 15.8 183 438-675 2-218 (218)
90 PRK13650 cbiO cobalt transport 100.0 2.2E-33 4.7E-38 292.8 14.7 175 436-677 4-219 (279)
91 PRK13631 cbiO cobalt transport 100.0 3E-33 6.4E-38 297.9 15.3 192 435-677 20-255 (320)
92 cd03226 ABC_cobalt_CbiO_domain 100.0 3E-33 6.6E-38 277.7 13.8 169 438-677 1-205 (205)
93 PRK13647 cbiO cobalt transport 100.0 3.2E-33 6.8E-38 290.9 14.5 174 436-677 4-217 (274)
94 cd03266 ABC_NatA_sodium_export 100.0 4.1E-33 8.9E-38 278.6 14.2 173 437-677 2-215 (218)
95 PRK14269 phosphate ABC transpo 100.0 5.1E-33 1.1E-37 283.9 15.0 177 436-677 2-220 (246)
96 cd03225 ABC_cobalt_CbiO_domain 100.0 3.6E-33 7.8E-38 277.7 13.4 171 438-675 1-211 (211)
97 PRK11629 lolD lipoprotein tran 100.0 4.8E-33 1E-37 281.7 14.3 178 436-677 5-224 (233)
98 cd03256 ABC_PhnC_transporter A 100.0 5.4E-33 1.2E-37 281.5 14.5 176 437-677 1-224 (241)
99 cd03292 ABC_FtsE_transporter F 100.0 4.9E-33 1.1E-37 277.0 14.0 175 437-676 1-214 (214)
100 cd03263 ABC_subfamily_A The AB 100.0 4.7E-33 1E-37 278.5 13.8 173 437-677 1-211 (220)
101 TIGR02211 LolD_lipo_ex lipopro 100.0 6.6E-33 1.4E-37 277.7 14.7 177 437-677 2-220 (221)
102 PRK14250 phosphate ABC transpo 100.0 9.1E-33 2E-37 281.5 15.8 173 436-677 3-211 (241)
103 TIGR02673 FtsE cell division A 100.0 5.1E-33 1.1E-37 277.2 13.6 174 437-675 2-214 (214)
104 COG4172 ABC-type uncharacteriz 100.0 6.6E-33 1.4E-37 295.7 14.9 233 436-677 6-506 (534)
105 TIGR02315 ABC_phnC phosphonate 100.0 8.6E-33 1.9E-37 280.6 15.0 176 437-677 2-225 (243)
106 cd03219 ABC_Mj1267_LivG_branch 100.0 6.5E-33 1.4E-37 280.4 13.3 172 437-677 1-222 (236)
107 cd03259 ABC_Carb_Solutes_like 100.0 7.4E-33 1.6E-37 276.2 13.3 170 437-677 1-210 (213)
108 PRK13637 cbiO cobalt transport 100.0 1.1E-32 2.4E-37 288.7 14.9 176 437-677 3-224 (287)
109 PRK13635 cbiO cobalt transport 100.0 1.3E-32 2.8E-37 287.1 14.9 175 436-677 5-219 (279)
110 cd03224 ABC_TM1139_LivF_branch 100.0 7.5E-33 1.6E-37 277.1 12.6 173 437-677 1-211 (222)
111 PRK10908 cell division protein 100.0 2.6E-32 5.5E-37 274.2 16.4 176 437-677 2-216 (222)
112 cd03264 ABC_drug_resistance_li 100.0 9.9E-33 2.1E-37 274.9 13.2 170 437-677 1-208 (211)
113 PRK14242 phosphate transporter 100.0 1.6E-32 3.6E-37 280.8 15.1 179 436-677 6-227 (253)
114 PRK13646 cbiO cobalt transport 100.0 1.4E-32 3.1E-37 287.6 14.8 179 436-677 2-225 (286)
115 PRK11153 metN DL-methionine tr 100.0 9.9E-33 2.1E-37 296.3 13.9 177 437-677 2-220 (343)
116 cd03262 ABC_HisP_GlnQ_permease 100.0 1.3E-32 2.8E-37 273.8 13.7 173 437-676 1-213 (213)
117 COG3840 ThiQ ABC-type thiamine 100.0 8E-33 1.7E-37 269.9 11.7 168 437-677 2-209 (231)
118 PRK11650 ugpC glycerol-3-phosp 100.0 1.7E-32 3.8E-37 296.0 15.6 172 436-677 3-214 (356)
119 cd03258 ABC_MetN_methionine_tr 100.0 1.4E-32 3E-37 277.8 13.8 177 437-677 2-220 (233)
120 PRK11432 fbpC ferric transport 100.0 1.7E-32 3.8E-37 295.5 15.4 172 435-677 5-216 (351)
121 PRK13632 cbiO cobalt transport 100.0 1.9E-32 4.1E-37 284.2 15.0 175 436-677 7-221 (271)
122 PRK14273 phosphate ABC transpo 100.0 2.2E-32 4.7E-37 280.3 15.1 179 436-677 7-228 (254)
123 PRK13643 cbiO cobalt transport 100.0 1.8E-32 3.8E-37 287.3 14.8 178 437-677 2-223 (288)
124 PRK10744 pstB phosphate transp 100.0 3.7E-32 8E-37 280.0 16.5 181 434-677 11-234 (260)
125 cd03268 ABC_BcrA_bacitracin_re 100.0 2.1E-32 4.6E-37 271.9 14.1 170 437-677 1-205 (208)
126 PRK13636 cbiO cobalt transport 100.0 2.6E-32 5.7E-37 285.2 15.2 176 436-677 5-221 (283)
127 TIGR03265 PhnT2 putative 2-ami 100.0 2.1E-32 4.5E-37 295.1 14.6 171 436-677 4-214 (353)
128 TIGR00972 3a0107s01c2 phosphat 100.0 2.9E-32 6.2E-37 278.3 14.8 178 437-677 2-222 (247)
129 PRK10584 putative ABC transpor 100.0 3.8E-32 8.2E-37 273.7 15.4 178 436-677 6-225 (228)
130 cd03296 ABC_CysA_sulfate_impor 100.0 2.7E-32 5.8E-37 277.3 14.3 170 437-677 3-216 (239)
131 cd03295 ABC_OpuCA_Osmoprotecti 100.0 2.4E-32 5.1E-37 278.1 13.8 173 437-677 1-215 (242)
132 PRK13644 cbiO cobalt transport 100.0 4.3E-32 9.4E-37 282.3 15.5 174 437-677 2-214 (274)
133 cd03301 ABC_MalK_N The N-termi 100.0 2.2E-32 4.7E-37 272.5 12.6 170 437-677 1-210 (213)
134 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 3.4E-32 7.3E-37 276.0 14.1 171 437-677 2-211 (236)
135 PRK13640 cbiO cobalt transport 100.0 4.9E-32 1.1E-36 283.0 15.6 175 436-677 5-222 (282)
136 COG1122 CbiO ABC-type cobalt t 100.0 2.7E-32 5.9E-37 279.2 13.3 174 436-677 3-218 (235)
137 COG1124 DppF ABC-type dipeptid 100.0 4.3E-32 9.2E-37 275.2 14.4 181 436-677 3-221 (252)
138 cd03246 ABCC_Protease_Secretio 100.0 4.6E-32 1E-36 263.3 14.1 143 437-676 1-173 (173)
139 PRK14267 phosphate ABC transpo 100.0 3.6E-32 7.9E-37 278.2 14.1 177 436-677 4-227 (253)
140 PRK13634 cbiO cobalt transport 100.0 5.1E-32 1.1E-36 284.1 15.3 179 437-677 3-225 (290)
141 PRK13648 cbiO cobalt transport 100.0 5.4E-32 1.2E-36 280.3 15.1 175 436-677 7-221 (269)
142 PRK11231 fecE iron-dicitrate t 100.0 6E-32 1.3E-36 277.5 15.0 172 437-677 3-217 (255)
143 cd03265 ABC_DrrA DrrA is the A 100.0 3.5E-32 7.6E-37 272.9 13.0 171 437-677 1-211 (220)
144 PRK09536 btuD corrinoid ABC tr 100.0 4.5E-32 9.7E-37 296.9 14.8 173 436-677 3-218 (402)
145 PRK11124 artP arginine transpo 100.0 5.7E-32 1.2E-36 275.1 14.5 178 437-677 3-220 (242)
146 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 5.4E-32 1.2E-36 278.2 14.2 169 436-676 4-217 (254)
147 cd03218 ABC_YhbG The ABC trans 100.0 4.6E-32 1E-36 273.5 13.5 172 437-677 1-212 (232)
148 cd03293 ABC_NrtD_SsuB_transpor 100.0 4.9E-32 1.1E-36 271.8 13.6 169 437-677 1-213 (220)
149 PRK13642 cbiO cobalt transport 100.0 6.4E-32 1.4E-36 281.3 14.9 175 436-677 4-219 (277)
150 PRK13651 cobalt transporter AT 100.0 8.3E-32 1.8E-36 285.0 15.7 190 437-677 3-244 (305)
151 PRK13537 nodulation ABC transp 100.0 5.2E-32 1.1E-36 286.5 14.1 173 435-677 6-217 (306)
152 PRK09493 glnQ glutamine ABC tr 100.0 7.3E-32 1.6E-36 274.0 14.6 174 437-677 2-215 (240)
153 cd03298 ABC_ThiQ_thiamine_tran 100.0 8.1E-32 1.7E-36 268.3 14.6 168 437-677 1-208 (211)
154 PRK10575 iron-hydroxamate tran 100.0 6.8E-32 1.5E-36 279.0 14.5 173 436-677 11-227 (265)
155 PRK14247 phosphate ABC transpo 100.0 8.8E-32 1.9E-36 274.9 14.9 177 436-677 3-224 (250)
156 cd03257 ABC_NikE_OppD_transpor 100.0 1.3E-31 2.9E-36 268.8 15.7 177 437-677 2-225 (228)
157 TIGR03005 ectoine_ehuA ectoine 100.0 7.7E-32 1.7E-36 276.0 14.1 185 437-677 1-226 (252)
158 PRK14235 phosphate transporter 100.0 1.1E-31 2.3E-36 278.0 15.4 181 434-677 17-241 (267)
159 PRK14240 phosphate transporter 100.0 1E-31 2.2E-36 274.5 14.9 180 435-677 2-224 (250)
160 PRK13652 cbiO cobalt transport 100.0 1.1E-31 2.3E-36 279.7 15.3 173 437-677 4-217 (277)
161 TIGR02982 heterocyst_DevA ABC 100.0 1.1E-31 2.4E-36 269.5 14.4 177 437-677 2-220 (220)
162 PRK14251 phosphate ABC transpo 100.0 8.8E-32 1.9E-36 275.1 13.9 179 436-677 4-225 (251)
163 PRK10851 sulfate/thiosulfate t 100.0 1.2E-31 2.7E-36 289.1 15.6 171 436-677 2-216 (353)
164 TIGR03873 F420-0_ABC_ATP propo 100.0 1.1E-31 2.5E-36 275.6 14.5 172 437-677 2-216 (256)
165 PRK14239 phosphate transporter 100.0 1.2E-31 2.5E-36 274.1 14.5 179 436-677 5-226 (252)
166 PRK14237 phosphate transporter 100.0 1.7E-31 3.6E-36 276.6 15.8 181 434-677 18-241 (267)
167 cd03235 ABC_Metallic_Cations A 100.0 5.9E-32 1.3E-36 269.7 11.9 165 438-676 1-210 (213)
168 TIGR03258 PhnT 2-aminoethylpho 100.0 9.4E-32 2E-36 290.9 14.5 172 435-677 4-218 (362)
169 PRK09452 potA putrescine/sperm 100.0 1.2E-31 2.6E-36 291.3 15.3 172 435-677 13-224 (375)
170 cd03269 ABC_putative_ATPase Th 100.0 7.1E-32 1.5E-36 268.5 12.4 168 437-677 1-207 (210)
171 PRK13649 cbiO cobalt transport 100.0 1E-31 2.2E-36 279.6 14.0 179 437-677 3-224 (280)
172 PRK13633 cobalt transporter AT 100.0 1.7E-31 3.7E-36 278.5 15.7 176 436-677 4-223 (280)
173 PRK10619 histidine/lysine/argi 100.0 1.3E-31 2.9E-36 275.2 14.6 188 435-677 4-231 (257)
174 PRK11247 ssuB aliphatic sulfon 100.0 1.6E-31 3.5E-36 276.3 15.2 169 435-677 11-213 (257)
175 cd03247 ABCC_cytochrome_bd The 100.0 1.4E-31 3.1E-36 260.7 14.0 146 437-677 1-175 (178)
176 PRK10247 putative ABC transpor 100.0 2E-31 4.4E-36 269.0 15.6 173 436-676 7-217 (225)
177 COG1127 Ttg2A ABC-type transpo 100.0 2E-31 4.4E-36 269.7 15.3 178 435-677 7-225 (263)
178 PRK14248 phosphate ABC transpo 100.0 1.8E-31 3.8E-36 276.1 15.1 179 436-677 21-242 (268)
179 PRK11300 livG leucine/isoleuci 100.0 1.7E-31 3.7E-36 273.3 14.8 173 436-677 5-233 (255)
180 cd03291 ABCC_CFTR1 The CFTR su 100.0 5.1E-31 1.1E-35 276.3 18.6 169 434-677 37-237 (282)
181 PRK11264 putative amino-acid A 100.0 1.4E-31 3E-36 273.2 13.9 180 437-677 4-223 (250)
182 PRK11000 maltose/maltodextrin 100.0 1.4E-31 3.1E-36 290.1 14.9 171 436-677 3-213 (369)
183 TIGR03410 urea_trans_UrtE urea 100.0 1.7E-31 3.7E-36 269.3 14.3 174 437-677 1-211 (230)
184 PRK14268 phosphate ABC transpo 100.0 1.5E-31 3.2E-36 275.2 14.2 180 435-677 11-232 (258)
185 PRK10253 iron-enterobactin tra 100.0 1.7E-31 3.7E-36 276.0 14.7 174 435-677 6-223 (265)
186 PRK14274 phosphate ABC transpo 100.0 2.1E-31 4.6E-36 274.0 15.2 179 436-677 12-233 (259)
187 TIGR03411 urea_trans_UrtD urea 100.0 1.8E-31 3.9E-36 271.1 14.3 172 437-677 3-221 (242)
188 PRK14244 phosphate ABC transpo 100.0 1E-31 2.2E-36 274.9 12.4 178 437-677 6-227 (251)
189 PRK14262 phosphate ABC transpo 100.0 1.7E-31 3.8E-36 272.8 14.1 179 436-677 3-224 (250)
190 PRK14256 phosphate ABC transpo 100.0 2.5E-31 5.5E-36 272.1 15.2 181 434-677 2-226 (252)
191 PRK14236 phosphate transporter 100.0 2.5E-31 5.4E-36 276.0 15.3 181 434-677 23-246 (272)
192 PRK13638 cbiO cobalt transport 100.0 1.9E-31 4.2E-36 276.5 14.2 174 437-677 2-215 (271)
193 PRK10895 lipopolysaccharide AB 100.0 3.3E-31 7.2E-36 269.3 15.6 174 436-677 3-216 (241)
194 PRK14249 phosphate ABC transpo 100.0 3.1E-31 6.6E-36 271.4 15.4 179 436-677 4-225 (251)
195 TIGR01186 proV glycine betaine 100.0 9.6E-32 2.1E-36 290.9 12.3 160 451-677 6-209 (363)
196 TIGR01288 nodI ATP-binding ABC 100.0 1.8E-31 4E-36 281.4 14.1 172 436-677 4-214 (303)
197 PRK14259 phosphate ABC transpo 100.0 4.8E-31 1E-35 273.6 16.9 177 434-673 11-228 (269)
198 PRK11614 livF leucine/isoleuci 100.0 2.2E-31 4.8E-36 270.0 13.9 178 436-677 5-216 (237)
199 PRK14245 phosphate ABC transpo 100.0 2.4E-31 5.1E-36 272.0 14.1 179 436-677 3-224 (250)
200 PRK13548 hmuV hemin importer A 100.0 5.1E-31 1.1E-35 271.7 16.6 172 437-677 3-220 (258)
201 PRK13641 cbiO cobalt transport 100.0 3.3E-31 7.1E-36 277.5 15.2 178 437-677 3-224 (287)
202 PRK14270 phosphate ABC transpo 100.0 3.7E-31 8E-36 270.8 15.1 179 436-677 4-225 (251)
203 PRK13639 cbiO cobalt transport 100.0 2.5E-31 5.5E-36 276.6 14.0 175 437-677 2-216 (275)
204 PRK13645 cbiO cobalt transport 100.0 3.5E-31 7.5E-36 277.2 15.1 183 434-677 4-230 (289)
205 PRK11831 putative ABC transpor 100.0 2.3E-31 5E-36 275.9 13.5 176 436-677 7-223 (269)
206 TIGR03522 GldA_ABC_ATP gliding 100.0 2.6E-31 5.7E-36 280.1 14.0 171 437-677 3-211 (301)
207 PRK11607 potG putrescine trans 100.0 2.9E-31 6.4E-36 288.5 14.8 172 435-677 18-229 (377)
208 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.5E-31 3.3E-36 277.4 11.9 174 438-677 26-240 (269)
209 PRK14253 phosphate ABC transpo 100.0 4.2E-31 9.1E-36 269.8 14.9 177 436-677 3-223 (249)
210 PRK15079 oligopeptide ABC tran 100.0 3.7E-31 8.1E-36 283.1 15.0 179 436-677 8-241 (331)
211 PRK14238 phosphate transporter 100.0 4.9E-31 1.1E-35 273.9 15.4 180 435-677 23-245 (271)
212 PRK14266 phosphate ABC transpo 100.0 4.8E-31 1E-35 269.5 14.6 179 436-677 3-224 (250)
213 TIGR01277 thiQ thiamine ABC tr 100.0 4.2E-31 9E-36 264.1 13.7 168 437-677 1-208 (213)
214 TIGR02769 nickel_nikE nickel i 100.0 5.3E-31 1.1E-35 272.4 14.8 178 437-677 3-230 (265)
215 cd03300 ABC_PotA_N PotA is an 100.0 2.7E-31 5.9E-36 269.0 12.3 170 437-677 1-210 (232)
216 PRK14261 phosphate ABC transpo 100.0 5.8E-31 1.3E-35 269.6 14.2 179 436-677 6-227 (253)
217 TIGR00968 3a0106s01 sulfate AB 100.0 5.8E-31 1.3E-35 267.7 13.9 170 437-677 1-210 (237)
218 PRK14252 phosphate ABC transpo 100.0 8E-31 1.7E-35 270.8 15.0 184 433-677 13-239 (265)
219 PRK14243 phosphate transporter 100.0 1.1E-30 2.3E-35 270.2 15.8 153 436-651 10-173 (264)
220 PRK11308 dppF dipeptide transp 100.0 8.2E-31 1.8E-35 280.0 15.4 179 436-677 5-234 (327)
221 TIGR01978 sufC FeS assembly AT 100.0 6.5E-31 1.4E-35 266.6 13.7 174 437-677 1-224 (243)
222 PRK14260 phosphate ABC transpo 100.0 1.1E-30 2.3E-35 269.1 14.8 180 435-677 6-233 (259)
223 PRK14241 phosphate transporter 100.0 9.9E-31 2.2E-35 268.9 14.4 179 436-677 4-232 (258)
224 PRK13536 nodulation factor exp 100.0 7.6E-31 1.7E-35 281.7 14.0 172 436-677 41-251 (340)
225 COG1131 CcmA ABC-type multidru 100.0 6.4E-31 1.4E-35 277.0 13.0 173 436-677 4-216 (293)
226 PRK14255 phosphate ABC transpo 100.0 1.1E-30 2.4E-35 267.1 13.7 179 436-677 5-226 (252)
227 PRK14272 phosphate ABC transpo 100.0 1.3E-30 2.8E-35 266.4 14.1 179 436-677 4-226 (252)
228 PRK10771 thiQ thiamine transpo 100.0 2.3E-30 5E-35 262.0 15.8 168 437-677 2-209 (232)
229 PRK14254 phosphate ABC transpo 100.0 1.5E-30 3.4E-35 272.5 14.7 180 435-677 38-259 (285)
230 cd03230 ABC_DR_subfamily_A Thi 100.0 1.4E-30 3E-35 252.9 13.3 141 437-676 1-173 (173)
231 cd03234 ABCG_White The White s 100.0 7.9E-31 1.7E-35 264.4 11.9 171 437-677 4-223 (226)
232 PRK14271 phosphate ABC transpo 100.0 2.8E-30 6E-35 269.2 16.3 179 435-677 20-241 (276)
233 cd03228 ABCC_MRP_Like The MRP 100.0 1.9E-30 4.1E-35 251.6 13.7 142 437-675 1-171 (171)
234 cd03229 ABC_Class3 This class 100.0 1.8E-30 3.8E-35 253.3 13.6 143 437-675 1-178 (178)
235 PRK14258 phosphate ABC transpo 100.0 2.1E-30 4.5E-35 267.4 14.8 180 435-677 6-235 (261)
236 cd03233 ABC_PDR_domain1 The pl 100.0 1.9E-30 4.2E-35 258.3 13.7 158 436-677 3-199 (202)
237 PRK14275 phosphate ABC transpo 100.0 1.7E-30 3.8E-35 272.1 14.0 180 435-677 38-260 (286)
238 TIGR01188 drrA daunorubicin re 100.0 1.2E-30 2.5E-35 275.1 12.6 163 445-677 2-203 (302)
239 TIGR03608 L_ocin_972_ABC putat 100.0 1.1E-30 2.4E-35 258.6 11.6 148 439-651 1-156 (206)
240 PRK14264 phosphate ABC transpo 100.0 3.6E-30 7.7E-35 272.2 16.1 180 435-677 44-279 (305)
241 PRK10070 glycine betaine trans 100.0 2E-30 4.3E-35 283.8 14.6 175 437-677 29-244 (400)
242 COG0410 LivF ABC-type branched 100.0 1.6E-30 3.4E-35 262.1 12.6 176 437-677 4-216 (237)
243 PRK13547 hmuV hemin importer A 100.0 3.4E-30 7.5E-35 268.4 15.6 172 437-677 2-234 (272)
244 PRK09984 phosphonate/organopho 100.0 3.7E-30 8E-35 265.2 15.5 178 436-677 4-232 (262)
245 cd03299 ABC_ModC_like Archeal 100.0 2E-30 4.4E-35 263.4 13.3 169 437-677 1-209 (235)
246 PRK11022 dppD dipeptide transp 100.0 3.2E-30 7E-35 275.2 15.4 180 437-677 4-233 (326)
247 TIGR03740 galliderm_ABC gallid 100.0 3E-30 6.5E-35 259.4 14.1 168 437-677 1-203 (223)
248 COG1118 CysA ABC-type sulfate/ 100.0 1.1E-30 2.4E-35 271.8 11.2 174 436-677 2-217 (345)
249 PRK11248 tauB taurine transpor 100.0 3.3E-30 7.2E-35 265.6 14.7 167 437-677 2-210 (255)
250 PRK14265 phosphate ABC transpo 100.0 4.9E-30 1.1E-34 266.9 15.9 180 435-677 19-248 (274)
251 PRK15112 antimicrobial peptide 100.0 3.2E-30 7E-35 267.0 14.1 175 436-677 4-229 (267)
252 PRK14263 phosphate ABC transpo 100.0 5.3E-30 1.2E-34 264.9 14.5 179 436-677 8-235 (261)
253 PRK11701 phnK phosphonate C-P 100.0 6.9E-30 1.5E-34 262.7 14.2 177 436-677 6-231 (258)
254 PRK14246 phosphate ABC transpo 100.0 8E-30 1.7E-34 263.1 14.6 184 435-677 9-231 (257)
255 PRK09473 oppD oligopeptide tra 100.0 6.8E-30 1.5E-34 273.3 14.1 181 435-677 11-241 (330)
256 PRK11144 modC molybdate transp 100.0 9.3E-30 2E-34 274.3 15.2 173 437-677 2-208 (352)
257 cd03213 ABCG_EPDR ABCG transpo 100.0 7.3E-30 1.6E-34 252.7 13.1 150 436-677 3-191 (194)
258 cd03215 ABC_Carb_Monos_II This 100.0 6.4E-30 1.4E-34 250.2 12.2 144 436-676 4-182 (182)
259 cd03297 ABC_ModC_molybdenum_tr 100.0 1.2E-29 2.6E-34 253.6 12.9 169 441-677 5-211 (214)
260 PRK15093 antimicrobial peptide 100.0 1.4E-29 3E-34 270.6 14.2 180 437-677 4-238 (330)
261 cd03231 ABC_CcmA_heme_exporter 100.0 2.6E-29 5.7E-34 249.6 14.8 145 437-651 1-147 (201)
262 PRK09580 sufC cysteine desulfu 100.0 2.4E-29 5.1E-34 256.2 14.5 87 437-525 2-91 (248)
263 PRK13538 cytochrome c biogenes 100.0 2.4E-29 5.3E-34 250.1 14.0 145 437-651 2-151 (204)
264 TIGR02142 modC_ABC molybdenum 100.0 1.6E-29 3.4E-34 272.6 13.3 170 441-677 4-211 (354)
265 PRK10418 nikD nickel transport 100.0 2.9E-29 6.4E-34 257.7 14.7 173 436-677 4-220 (254)
266 cd03214 ABC_Iron-Siderophores_ 100.0 2.5E-29 5.5E-34 245.6 13.4 145 438-677 1-177 (180)
267 PRK10419 nikE nickel transport 100.0 3.5E-29 7.5E-34 259.6 14.9 175 437-677 4-231 (268)
268 cd03232 ABC_PDR_domain2 The pl 100.0 2E-29 4.3E-34 249.0 12.1 149 436-677 3-189 (192)
269 TIGR02323 CP_lyasePhnK phospho 100.0 3.5E-29 7.6E-34 256.2 14.1 178 436-677 3-228 (253)
270 CHL00131 ycf16 sulfate ABC tra 100.0 3.8E-29 8.3E-34 255.5 14.3 175 436-677 7-231 (252)
271 PRK13540 cytochrome c biogenes 100.0 3.8E-29 8.1E-34 248.0 13.5 145 437-651 2-149 (200)
272 TIGR03415 ABC_choXWV_ATP choli 100.0 2.7E-29 5.8E-34 273.4 13.3 171 441-677 29-244 (382)
273 PRK15056 manganese/iron transp 100.0 7.6E-29 1.6E-33 257.4 15.5 170 436-677 6-220 (272)
274 COG4555 NatA ABC-type Na+ tran 100.0 1.4E-29 3E-34 250.6 8.4 173 437-677 2-212 (245)
275 cd03223 ABCD_peroxisomal_ALDP 100.0 6.6E-29 1.4E-33 240.3 12.9 137 437-675 1-164 (166)
276 PRK13539 cytochrome c biogenes 100.0 1.3E-28 2.8E-33 245.6 15.1 143 437-651 3-149 (207)
277 TIGR01189 ccmA heme ABC export 100.0 6.5E-29 1.4E-33 245.7 12.1 145 437-651 1-149 (198)
278 PRK13543 cytochrome c biogenes 100.0 1.6E-28 3.5E-33 246.2 14.7 144 436-651 11-159 (214)
279 PRK10636 putative ABC transpor 100.0 5.5E-29 1.2E-33 287.0 12.9 131 526-677 342-506 (638)
280 cd03217 ABC_FeS_Assembly ABC-t 100.0 1.1E-28 2.3E-33 245.2 12.8 148 437-677 1-184 (200)
281 COG1137 YhbG ABC-type (unclass 100.0 8E-30 1.7E-34 252.1 4.5 175 435-677 3-218 (243)
282 PRK10261 glutathione transport 100.0 1.9E-28 4.2E-33 281.8 15.0 178 436-677 313-543 (623)
283 PRK03695 vitamin B12-transport 100.0 2.6E-28 5.5E-33 250.3 14.1 166 438-677 2-212 (248)
284 cd03267 ABC_NatA_like Similar 100.0 1.3E-28 2.8E-33 250.5 11.5 159 451-677 34-233 (236)
285 cd03216 ABC_Carb_Monos_I This 100.0 2.8E-28 6.2E-33 235.2 13.1 129 437-677 1-161 (163)
286 PRK10535 macrolide transporter 100.0 3.2E-28 6.8E-33 281.2 15.0 178 436-677 4-222 (648)
287 PRK09544 znuC high-affinity zi 100.0 4.3E-28 9.3E-33 249.7 14.2 139 436-651 4-142 (251)
288 TIGR01184 ntrCD nitrate transp 100.0 3.2E-28 7E-33 246.7 13.1 152 454-677 1-194 (230)
289 PRK13409 putative ATPase RIL; 100.0 1E-28 2.2E-33 282.4 10.4 104 526-651 369-475 (590)
290 TIGR02324 CP_lyasePhnL phospho 100.0 4.2E-28 9.1E-33 243.8 13.0 152 437-651 2-171 (224)
291 PRK13541 cytochrome c biogenes 100.0 5.6E-28 1.2E-32 238.7 12.8 141 437-651 2-145 (195)
292 TIGR01166 cbiO cobalt transpor 99.9 5E-28 1.1E-32 237.7 11.4 138 451-653 5-151 (190)
293 PRK10261 glutathione transport 99.9 9.2E-28 2E-32 276.1 15.0 192 435-677 11-248 (623)
294 PF00005 ABC_tran: ABC transpo 99.9 8.3E-28 1.8E-32 222.6 10.2 130 454-654 1-133 (137)
295 COG0411 LivG ABC-type branched 99.9 4E-28 8.7E-33 246.4 8.7 173 437-677 5-229 (250)
296 KOG0060|consensus 99.9 3.8E-25 8.1E-30 244.8 32.5 375 207-651 182-592 (659)
297 COG4181 Predicted ABC-type tra 99.9 1.5E-27 3.3E-32 231.2 10.8 178 436-677 6-225 (228)
298 COG4608 AppF ABC-type oligopep 99.9 1.7E-27 3.7E-32 245.6 11.7 146 436-677 4-189 (268)
299 TIGR01257 rim_protein retinal- 99.9 3.2E-27 6.9E-32 295.4 15.3 175 435-677 927-1139(2272)
300 TIGR02770 nickel_nikD nickel i 99.9 2.1E-27 4.6E-32 240.3 10.9 159 453-677 1-205 (230)
301 COG4619 ABC-type uncharacteriz 99.9 3.7E-27 8E-32 227.8 11.4 165 446-676 11-212 (223)
302 PLN03211 ABC transporter G-25; 99.9 1.2E-26 2.5E-31 268.5 17.1 158 451-677 81-286 (659)
303 TIGR00955 3a01204 The Eye Pigm 99.9 1.6E-27 3.4E-32 273.9 9.1 160 450-677 37-246 (617)
304 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 5.8E-27 1.2E-31 236.9 12.1 161 437-677 23-221 (224)
305 COG0444 DppD ABC-type dipeptid 99.9 1.7E-26 3.7E-31 242.8 13.9 183 437-677 2-233 (316)
306 TIGR01257 rim_protein retinal- 99.9 1.3E-26 2.9E-31 289.8 15.1 176 434-677 1935-2149(2272)
307 COG4559 ABC-type hemin transpo 99.9 2.3E-26 5.1E-31 229.3 13.6 172 437-677 2-220 (259)
308 COG4175 ProV ABC-type proline/ 99.9 1.3E-26 2.8E-31 242.0 10.9 161 453-677 43-244 (386)
309 COG1129 MglA ABC-type sugar tr 99.9 4.5E-26 9.8E-31 252.7 15.5 174 436-677 8-224 (500)
310 TIGR00956 3a01205 Pleiotropic 99.9 3.2E-26 7E-31 282.9 15.7 173 436-677 759-983 (1394)
311 TIGR03771 anch_rpt_ABC anchore 99.9 1.5E-26 3.2E-31 233.6 10.0 146 459-677 1-191 (223)
312 COG4148 ModC ABC-type molybdat 99.9 1.4E-26 3E-31 238.4 9.8 159 456-677 16-208 (352)
313 PRK15064 ABC transporter ATP-b 99.9 6.9E-26 1.5E-30 255.7 13.9 193 437-676 2-230 (530)
314 cd03236 ABC_RNaseL_inhibitor_d 99.9 4.1E-26 8.9E-31 236.0 9.8 151 441-651 5-161 (255)
315 PRK11819 putative ABC transpor 99.9 1.2E-25 2.6E-30 255.3 13.8 63 436-499 6-68 (556)
316 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 1.2E-25 2.5E-30 255.2 13.0 63 436-499 4-66 (552)
317 PRK15064 ABC transporter ATP-b 99.9 2E-25 4.4E-30 251.9 14.8 163 435-677 318-514 (530)
318 PRK13546 teichoic acids export 99.9 2.3E-25 5E-30 231.4 13.4 147 451-677 37-222 (264)
319 COG4167 SapF ABC-type antimicr 99.9 1.5E-25 3.3E-30 219.2 9.7 171 451-677 26-229 (267)
320 COG3845 ABC-type uncharacteriz 99.9 2E-25 4.2E-30 244.3 11.7 180 436-677 4-219 (501)
321 COG4525 TauB ABC-type taurine 99.9 2.8E-25 6.1E-30 219.3 11.2 168 437-676 4-213 (259)
322 COG4598 HisP ABC-type histidin 99.9 2.2E-25 4.8E-30 217.6 9.5 186 435-676 5-230 (256)
323 PRK13545 tagH teichoic acids e 99.9 9.5E-25 2.1E-29 244.4 14.5 163 435-677 20-222 (549)
324 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 9.1E-25 2E-29 207.1 11.7 62 437-500 1-62 (144)
325 COG4161 ArtP ABC-type arginine 99.9 6E-25 1.3E-29 211.5 10.1 177 436-677 2-220 (242)
326 cd03237 ABC_RNaseL_inhibitor_d 99.9 1E-24 2.2E-29 224.3 11.6 128 444-651 1-137 (246)
327 PRK15177 Vi polysaccharide exp 99.9 9.3E-25 2E-29 219.6 9.8 146 453-677 2-182 (213)
328 cd00267 ABC_ATPase ABC (ATP-bi 99.9 2.9E-24 6.2E-29 204.9 12.3 126 438-675 1-157 (157)
329 COG4604 CeuD ABC-type enteroch 99.9 7.2E-25 1.6E-29 216.7 8.3 172 437-677 2-215 (252)
330 TIGR01187 potA spermidine/putr 99.9 1E-24 2.2E-29 232.7 9.8 140 469-677 1-180 (325)
331 PRK11819 putative ABC transpor 99.9 5.3E-24 1.2E-28 241.9 15.0 138 435-651 323-467 (556)
332 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 8E-24 1.7E-28 240.2 14.9 138 435-651 321-465 (552)
333 PLN03140 ABC transporter G fam 99.9 9.7E-24 2.1E-28 261.1 15.9 175 435-677 866-1100(1470)
334 PLN03073 ABC transporter F fam 99.9 1.1E-23 2.4E-28 245.6 15.2 164 435-677 507-703 (718)
335 COG1101 PhnK ABC-type uncharac 99.9 6.3E-24 1.4E-28 212.4 10.5 173 450-677 18-228 (263)
336 PRK11147 ABC transporter ATPas 99.9 1.2E-23 2.6E-28 242.7 14.4 163 436-677 319-517 (635)
337 COG1119 ModF ABC-type molybden 99.9 2.3E-23 5E-28 212.0 13.5 177 435-677 30-252 (257)
338 TIGR00956 3a01205 Pleiotropic 99.9 3E-23 6.5E-28 256.7 10.4 161 451-677 74-290 (1394)
339 cd03222 ABC_RNaseL_inhibitor T 99.9 9.4E-23 2E-27 200.7 10.1 59 440-501 4-62 (177)
340 KOG0064|consensus 99.9 1.2E-18 2.6E-23 191.5 41.4 460 116-657 118-640 (728)
341 KOG0061|consensus 99.9 2.4E-22 5.2E-27 230.9 13.1 175 435-677 24-250 (613)
342 PRK11147 ABC transporter ATPas 99.9 1.9E-22 4.2E-27 232.7 11.8 61 437-499 4-64 (635)
343 COG4136 ABC-type uncharacteriz 99.9 2.8E-22 6.1E-27 191.2 10.7 144 437-651 3-156 (213)
344 PLN03140 ABC transporter G fam 99.9 6.9E-23 1.5E-27 253.7 7.5 166 451-677 178-417 (1470)
345 cd03238 ABC_UvrA The excision 99.9 5.3E-22 1.2E-26 195.2 10.0 128 450-676 7-166 (176)
346 COG4152 ABC-type uncharacteriz 99.9 4.7E-22 1E-26 202.1 8.6 173 436-677 2-209 (300)
347 PLN03073 ABC transporter F fam 99.8 3E-21 6.6E-26 225.3 12.2 196 435-676 176-419 (718)
348 PRK15439 autoinducer 2 ABC tra 99.8 1.2E-21 2.7E-26 220.4 8.1 143 526-677 41-219 (510)
349 PRK13549 xylose transporter AT 99.8 1.1E-21 2.4E-26 220.4 7.6 143 526-677 35-222 (506)
350 COG1134 TagH ABC-type polysacc 99.8 4.5E-21 9.7E-26 195.4 11.2 149 451-677 40-226 (249)
351 COG0396 sufC Cysteine desulfur 99.8 9.9E-21 2.1E-25 191.2 13.2 177 436-677 3-224 (251)
352 PRK11288 araG L-arabinose tran 99.8 1.4E-21 3.1E-26 219.3 7.4 144 525-677 33-219 (501)
353 PRK10762 D-ribose transporter 99.8 1.6E-21 3.5E-26 218.8 7.4 143 526-677 34-220 (501)
354 PRK10982 galactose/methyl gala 99.8 1.8E-21 4E-26 217.7 7.7 144 525-677 27-213 (491)
355 PRK09700 D-allose transporter 99.8 1.5E-21 3.3E-26 219.3 6.9 143 526-677 35-224 (510)
356 PRK10938 putative molybdenum t 99.8 4.4E-21 9.6E-26 214.5 8.6 143 525-677 32-214 (490)
357 COG0488 Uup ATPase components 99.8 2.1E-20 4.5E-25 211.1 12.9 62 436-499 3-64 (530)
358 COG4674 Uncharacterized ABC-ty 99.8 1E-20 2.2E-25 187.1 8.9 148 436-651 5-169 (249)
359 TIGR02633 xylG D-xylose ABC tr 99.8 8E-21 1.7E-25 212.9 7.2 145 525-677 30-220 (500)
360 COG4586 ABC-type uncharacteriz 99.8 2.1E-20 4.6E-25 192.6 9.5 160 452-677 38-236 (325)
361 COG4133 CcmA ABC-type transpor 99.8 5.3E-20 1.1E-24 181.2 9.7 144 438-651 4-152 (209)
362 TIGR03269 met_CoM_red_A2 methy 99.8 3.4E-20 7.4E-25 208.9 7.0 172 437-677 1-248 (520)
363 PRK15134 microcin C ABC transp 99.8 4E-20 8.7E-25 208.9 7.0 147 525-677 38-236 (529)
364 cd03270 ABC_UvrA_I The excisio 99.8 2.9E-19 6.3E-24 181.5 7.7 32 450-481 7-38 (226)
365 PF00664 ABC_membrane: ABC tra 99.8 6.7E-15 1.5E-19 145.0 35.5 203 178-382 65-275 (275)
366 COG4107 PhnK ABC-type phosphon 99.8 2.2E-18 4.7E-23 168.1 10.3 62 436-499 6-67 (258)
367 COG0488 Uup ATPase components 99.7 2.5E-17 5.4E-22 186.3 17.9 140 434-651 319-461 (530)
368 KOG0059|consensus 99.7 2.1E-18 4.6E-23 205.9 9.1 175 435-676 563-776 (885)
369 cd03271 ABC_UvrA_II The excisi 99.7 3.8E-18 8.1E-23 177.7 8.1 195 452-677 9-256 (261)
370 cd03272 ABC_SMC3_euk Eukaryoti 99.7 1.3E-17 2.8E-22 169.6 9.2 159 436-651 3-184 (243)
371 COG1129 MglA ABC-type sugar tr 99.7 2.6E-17 5.6E-22 183.3 11.9 182 436-677 263-480 (500)
372 COG1123 ATPase components of v 99.7 8.2E-18 1.8E-22 188.4 5.7 145 526-677 39-234 (539)
373 cd03278 ABC_SMC_barmotin Barmo 99.7 1E-17 2.3E-22 167.1 5.9 122 455-651 14-139 (197)
374 COG4778 PhnL ABC-type phosphon 99.7 2.1E-17 4.6E-22 160.8 7.7 62 437-498 5-71 (235)
375 cd03279 ABC_sbcCD SbcCD and ot 99.7 3.5E-17 7.7E-22 164.4 7.3 134 436-648 5-142 (213)
376 PRK13409 putative ATPase RIL; 99.7 2.1E-17 4.5E-22 189.7 6.1 140 441-651 78-234 (590)
377 COG3845 ABC-type uncharacteriz 99.7 2.7E-16 5.9E-21 172.9 10.6 180 434-677 255-482 (501)
378 cd00820 PEPCK_HprK Phosphoenol 99.6 3E-16 6.4E-21 143.0 5.0 75 452-592 3-77 (107)
379 PRK10636 putative ABC transpor 99.6 5E-16 1.1E-20 179.8 7.4 161 437-676 2-224 (638)
380 cd03274 ABC_SMC4_euk Eukaryoti 99.6 5.6E-16 1.2E-20 156.4 5.8 42 436-485 5-46 (212)
381 cd03273 ABC_SMC2_euk Eukaryoti 99.6 3.2E-15 7E-20 153.7 7.6 57 436-500 5-62 (251)
382 COG4138 BtuD ABC-type cobalami 99.6 4.9E-16 1.1E-20 151.9 1.2 166 437-676 4-210 (248)
383 PRK00349 uvrA excinuclease ABC 99.5 2.8E-14 6E-19 170.6 12.0 43 436-485 614-656 (943)
384 KOG0927|consensus 99.5 9.1E-15 2E-19 162.0 7.0 143 435-652 388-532 (614)
385 PRK00635 excinuclease ABC subu 99.5 5.9E-14 1.3E-18 174.9 11.7 40 436-482 600-639 (1809)
386 KOG0065|consensus 99.5 8.4E-15 1.8E-19 175.3 3.7 169 438-674 789-1007(1391)
387 cd03240 ABC_Rad50 The catalyti 99.5 3.4E-14 7.4E-19 142.5 6.5 38 458-496 17-58 (204)
388 COG4172 ABC-type uncharacteriz 99.5 5.7E-14 1.2E-18 151.5 6.8 146 526-677 40-237 (534)
389 cd03275 ABC_SMC1_euk Eukaryoti 99.4 8.6E-14 1.9E-18 143.1 6.3 55 436-499 3-57 (247)
390 TIGR00630 uvra excinuclease AB 99.4 6.2E-13 1.3E-17 158.9 13.0 40 436-482 612-651 (924)
391 KOG0927|consensus 99.4 3.5E-13 7.6E-18 149.6 9.7 61 433-495 72-132 (614)
392 KOG2355|consensus 99.4 3E-12 6.5E-17 128.3 11.4 68 434-502 11-78 (291)
393 KOG0062|consensus 99.3 3.7E-12 8.1E-17 140.9 11.0 170 434-676 360-557 (582)
394 PRK11176 lipid transporter ATP 99.3 2.4E-08 5.2E-13 114.4 40.1 34 526-559 373-406 (582)
395 KOG0062|consensus 99.3 4.6E-12 1E-16 140.2 8.2 144 434-655 78-224 (582)
396 COG1245 Predicted ATPase, RNas 99.3 1.8E-11 3.9E-16 134.0 12.5 35 460-494 363-397 (591)
397 KOG0065|consensus 99.3 1.8E-12 4E-17 155.6 3.4 164 451-677 128-341 (1391)
398 PRK10522 multidrug transporter 99.3 1.8E-08 4E-13 114.9 35.6 34 526-559 353-386 (547)
399 TIGR03796 NHPM_micro_ABC1 NHPM 99.2 3.1E-08 6.6E-13 116.4 37.4 34 526-559 509-542 (710)
400 cd01128 rho_factor Transcripti 99.2 1.4E-11 3.1E-16 127.8 8.4 65 612-676 110-211 (249)
401 cd03276 ABC_SMC6_euk Eukaryoti 99.2 1E-11 2.2E-16 124.2 6.1 32 455-487 13-44 (198)
402 TIGR03797 NHPM_micro_ABC2 NHPM 99.2 1.9E-08 4.2E-13 117.6 33.3 34 526-559 483-516 (686)
403 COG2274 SunT ABC-type bacterio 99.2 6.7E-08 1.5E-12 113.6 37.0 35 525-559 502-536 (709)
404 KOG0066|consensus 99.2 1.8E-11 3.9E-16 133.0 6.1 144 435-653 585-728 (807)
405 TIGR02203 MsbA_lipidA lipid A 99.2 3.9E-08 8.4E-13 112.2 33.2 34 526-559 362-395 (571)
406 COG2401 ABC-type ATPase fused 99.2 1.8E-11 3.9E-16 132.7 5.1 47 451-497 396-450 (593)
407 TIGR02204 MsbA_rel ABC transpo 99.2 1.9E-07 4.1E-12 106.8 37.9 34 526-559 370-403 (576)
408 TIGR00958 3a01208 Conjugate Tr 99.1 2.7E-07 5.9E-12 108.8 38.8 34 526-559 511-544 (711)
409 COG4170 SapD ABC-type antimicr 99.1 7.9E-11 1.7E-15 118.5 7.4 156 439-651 6-180 (330)
410 TIGR01193 bacteriocin_ABC ABC- 99.1 2.7E-07 5.8E-12 108.5 38.1 34 526-559 504-537 (708)
411 TIGR01842 type_I_sec_PrtD type 99.1 1.1E-07 2.3E-12 108.6 33.4 34 526-559 348-381 (544)
412 TIGR02857 CydD thiol reductant 99.1 7.8E-08 1.7E-12 109.0 31.7 34 526-559 352-385 (529)
413 TIGR03375 type_I_sec_LssB type 99.1 1.3E-07 2.7E-12 111.0 33.7 34 526-559 495-528 (694)
414 TIGR02868 CydC thiol reductant 99.1 1.3E-07 2.8E-12 107.3 32.5 34 526-559 365-398 (529)
415 TIGR01846 type_I_sec_HlyB type 99.1 9E-08 1.9E-12 112.3 32.1 34 526-559 487-520 (694)
416 TIGR01194 cyc_pep_trnsptr cycl 99.1 2.7E-07 5.9E-12 105.7 35.1 35 525-559 371-405 (555)
417 PRK13657 cyclic beta-1,2-gluca 99.1 6.1E-07 1.3E-11 103.3 37.4 34 526-559 365-398 (588)
418 PRK10790 putative multidrug tr 99.1 4.6E-07 9.9E-12 104.3 36.2 34 526-559 371-404 (592)
419 TIGR03238 dnd_assoc_3 dnd syst 99.1 1.6E-10 3.4E-15 128.7 6.4 67 452-521 20-87 (504)
420 TIGR01192 chvA glucan exporter 99.1 1.1E-06 2.5E-11 101.3 38.2 34 526-559 365-398 (585)
421 PRK11160 cysteine/glutathione 99.0 4.3E-07 9.3E-12 104.5 33.4 34 526-559 370-403 (574)
422 PRK10789 putative multidrug tr 99.0 6E-07 1.3E-11 103.2 33.7 34 526-559 345-378 (569)
423 cd03280 ABC_MutS2 MutS2 homolo 99.0 3.1E-10 6.7E-15 113.2 5.0 33 453-485 16-49 (200)
424 cd03241 ABC_RecN RecN ATPase i 99.0 1E-09 2.2E-14 115.0 7.8 34 454-488 12-45 (276)
425 COG1132 MdlB ABC-type multidru 99.0 6.6E-06 1.4E-10 94.4 39.5 35 525-559 358-392 (567)
426 PRK11098 microcin B17 transpor 99.0 1.2E-05 2.5E-10 89.3 39.2 276 115-408 95-395 (409)
427 cd03277 ABC_SMC5_euk Eukaryoti 98.9 1.9E-09 4.2E-14 109.2 6.9 52 599-651 96-152 (213)
428 cd03239 ABC_SMC_head The struc 98.9 1.9E-09 4.2E-14 106.3 5.3 56 614-673 83-172 (178)
429 PRK11174 cysteine/glutathione 98.9 2.2E-06 4.8E-11 98.6 30.6 35 524-559 378-412 (588)
430 TIGR00767 rho transcription te 98.8 7E-09 1.5E-13 114.0 8.8 81 396-491 104-195 (415)
431 COG1245 Predicted ATPase, RNas 98.8 1.5E-09 3.3E-14 119.2 3.3 157 441-651 79-235 (591)
432 PRK12369 putative transporter; 98.8 5.5E-05 1.2E-09 81.9 36.7 282 110-407 13-320 (326)
433 PRK00300 gmk guanylate kinase; 98.8 8E-09 1.7E-13 102.5 5.8 92 462-607 3-94 (205)
434 cd03242 ABC_RecF RecF is a rec 98.8 4.7E-09 1E-13 109.7 4.3 176 455-651 13-214 (270)
435 COG3839 MalK ABC-type sugar tr 98.7 2.4E-09 5.3E-14 115.4 1.5 39 524-562 31-69 (338)
436 TIGR02858 spore_III_AA stage I 98.7 1.7E-08 3.6E-13 106.2 7.5 81 465-546 112-193 (270)
437 PRK06002 fliI flagellum-specif 98.7 3E-08 6.4E-13 110.6 7.5 87 434-522 137-230 (450)
438 COG3842 PotA ABC-type spermidi 98.6 7.9E-09 1.7E-13 112.0 1.6 39 524-562 33-71 (352)
439 TIGR00954 3a01203 Peroxysomal 98.6 6.7E-05 1.5E-09 88.1 34.1 28 526-553 482-509 (659)
440 COG0178 UvrA Excinuclease ATPa 98.6 1.5E-07 3.2E-12 109.6 10.0 39 436-481 606-644 (935)
441 cd03285 ABC_MSH2_euk MutS2 hom 98.6 4.4E-08 9.5E-13 100.0 5.1 35 451-485 17-51 (222)
442 COG4987 CydC ABC-type transpor 98.5 3.4E-05 7.4E-10 87.1 26.6 34 526-559 368-401 (573)
443 KOG0063|consensus 98.5 1.4E-07 3E-12 103.4 7.3 49 444-493 343-396 (592)
444 PRK01889 GTPase RsgA; Reviewed 98.5 9E-08 2E-12 104.3 5.0 70 453-525 184-253 (356)
445 COG1124 DppF ABC-type dipeptid 98.5 3.5E-08 7.6E-13 101.6 1.6 55 526-580 37-92 (252)
446 PRK00635 excinuclease ABC subu 98.5 3.8E-07 8.2E-12 115.2 10.9 52 453-504 1505-1565(1809)
447 COG4988 CydD ABC-type transpor 98.5 0.00022 4.8E-09 81.4 31.2 129 158-287 36-173 (559)
448 KOG0058|consensus 98.5 3.3E-05 7.1E-10 89.8 24.9 35 525-559 497-531 (716)
449 KOG0057|consensus 98.5 2.1E-05 4.5E-10 88.9 22.5 33 526-559 382-414 (591)
450 cd03227 ABC_Class2 ABC-type Cl 98.5 1.1E-07 2.4E-12 91.9 4.0 34 458-491 15-48 (162)
451 PF06472 ABC_membrane_2: ABC t 98.4 0.0009 2E-08 70.7 32.9 223 106-331 21-250 (281)
452 PRK07196 fliI flagellum-specif 98.4 1.6E-07 3.5E-12 104.6 4.3 52 452-504 144-198 (434)
453 cd01130 VirB11-like_ATPase Typ 98.4 1.7E-07 3.6E-12 92.7 2.5 50 452-501 13-62 (186)
454 PRK07721 fliI flagellum-specif 98.4 4.1E-07 9E-12 101.7 5.9 67 452-519 147-221 (438)
455 COG4615 PvdE ABC-type sideroph 98.3 0.0014 3.1E-08 72.2 32.0 33 527-559 354-386 (546)
456 TIGR02858 spore_III_AA stage I 98.3 4E-07 8.7E-12 95.9 4.5 128 453-589 50-179 (270)
457 TIGR02524 dot_icm_DotB Dot/Icm 98.3 5.2E-07 1.1E-11 98.6 5.5 41 462-502 132-175 (358)
458 cd03283 ABC_MutS-like MutS-lik 98.3 2.9E-07 6.3E-12 92.5 3.0 35 451-487 14-48 (199)
459 PRK08149 ATP synthase SpaL; Va 98.3 5.5E-07 1.2E-11 100.3 5.3 68 452-520 140-214 (428)
460 COG4555 NatA ABC-type Na+ tran 98.3 2.9E-07 6.3E-12 92.8 2.4 50 526-576 32-81 (245)
461 PTZ00132 GTP-binding nuclear p 98.3 3.3E-06 7.2E-11 84.6 10.0 38 466-503 11-66 (215)
462 COG0444 DppD ABC-type dipeptid 98.3 2.4E-07 5.2E-12 98.8 1.8 55 526-580 35-98 (316)
463 COG1101 PhnK ABC-type uncharac 98.3 2.3E-07 4.9E-12 94.4 1.4 55 526-580 36-90 (263)
464 PRK06793 fliI flagellum-specif 98.3 2.4E-06 5.2E-11 95.3 9.4 68 436-505 130-197 (432)
465 COG4152 ABC-type uncharacteriz 98.3 3.1E-07 6.7E-12 94.9 2.0 52 524-579 30-81 (300)
466 PRK10078 ribose 1,5-bisphospho 98.3 9.5E-07 2.1E-11 87.2 4.9 55 464-521 2-56 (186)
467 PRK15494 era GTPase Era; Provi 98.2 8.1E-07 1.7E-11 96.2 3.9 54 433-487 15-75 (339)
468 TIGR03263 guanyl_kin guanylate 98.2 2.2E-06 4.8E-11 83.2 5.9 26 464-489 1-26 (180)
469 COG1120 FepC ABC-type cobalami 98.2 4.9E-07 1.1E-11 94.5 1.2 37 523-559 29-65 (258)
470 PRK00064 recF recombination pr 98.1 6.7E-06 1.5E-10 89.8 9.2 33 454-487 14-46 (361)
471 cd03233 ABC_PDR_domain1 The pl 98.1 9.2E-07 2E-11 88.4 2.1 34 526-559 37-73 (202)
472 PRK09862 putative ATP-dependen 98.1 4.8E-06 1E-10 94.7 8.0 65 439-505 187-251 (506)
473 TIGR02673 FtsE cell division A 98.1 8.3E-07 1.8E-11 88.8 1.6 42 526-567 32-73 (214)
474 TIGR00606 rad50 rad50. This fa 98.1 2.3E-06 5E-11 107.3 5.4 68 581-651 1153-1227(1311)
475 cd01131 PilT Pilus retraction 98.1 3.3E-06 7.1E-11 84.6 5.0 37 466-502 3-40 (198)
476 cd03292 ABC_FtsE_transporter F 98.1 1.1E-06 2.4E-11 87.8 1.5 43 526-568 31-73 (214)
477 PLN02796 D-glycerate 3-kinase 98.1 1.4E-06 3E-11 94.6 2.4 62 451-512 79-151 (347)
478 TIGR01166 cbiO cobalt transpor 98.1 9.6E-07 2.1E-11 87.0 0.9 35 526-560 22-56 (190)
479 PRK09825 idnK D-gluconate kina 98.1 4.3E-06 9.3E-11 82.5 5.4 55 463-522 2-56 (176)
480 cd00071 GMPK Guanosine monopho 98.1 4.6E-06 1E-10 78.9 5.3 87 467-606 2-88 (137)
481 COG1125 OpuBA ABC-type proline 98.1 1.2E-06 2.7E-11 91.0 1.4 36 524-559 29-64 (309)
482 TIGR00235 udk uridine kinase. 98.1 2.6E-06 5.6E-11 85.5 3.6 63 462-525 4-67 (207)
483 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.1 1.2E-06 2.6E-11 88.0 1.0 43 526-568 34-76 (218)
484 PRK15079 oligopeptide ABC tran 98.0 1.4E-06 3.1E-11 94.0 1.6 57 525-584 50-106 (331)
485 cd03225 ABC_cobalt_CbiO_domain 98.0 1.3E-06 2.9E-11 87.1 1.0 34 526-559 31-64 (211)
486 PRK06315 type III secretion sy 98.0 3.5E-06 7.7E-11 94.2 4.4 53 452-505 153-209 (442)
487 TIGR02322 phosphon_PhnN phosph 98.0 5.5E-06 1.2E-10 80.6 5.2 62 464-526 1-78 (179)
488 cd03229 ABC_Class3 This class 98.0 1.3E-06 2.9E-11 85.4 0.9 34 526-559 30-63 (178)
489 KOG0066|consensus 98.0 6.7E-06 1.5E-10 90.5 6.1 65 436-502 264-330 (807)
490 TIGR00960 3a0501s02 Type II (G 98.0 1.4E-06 3.1E-11 87.3 0.9 42 526-567 33-74 (216)
491 PRK10584 putative ABC transpor 98.0 1.5E-06 3.3E-11 87.9 1.0 42 526-567 40-81 (228)
492 cd03259 ABC_Carb_Solutes_like 98.0 1.5E-06 3.3E-11 87.0 0.9 34 526-559 30-63 (213)
493 PRK10733 hflB ATP-dependent me 98.0 1.1E-07 2.3E-12 111.2 -8.5 159 288-490 41-211 (644)
494 PRK07594 type III secretion sy 98.0 5.3E-06 1.1E-10 92.6 5.1 69 435-505 128-196 (433)
495 cd03264 ABC_drug_resistance_li 98.0 1.7E-06 3.6E-11 86.6 1.0 36 524-559 27-62 (211)
496 PF00005 ABC_tran: ABC transpo 98.0 1.4E-06 3E-11 80.7 0.3 34 526-559 15-48 (137)
497 PRK13545 tagH teichoic acids e 98.0 5E-06 1.1E-10 94.8 4.8 34 526-559 54-87 (549)
498 COG4167 SapF ABC-type antimicr 98.0 1.9E-06 4.2E-11 85.9 1.2 55 526-580 43-97 (267)
499 TIGR03608 L_ocin_972_ABC putat 98.0 1.7E-06 3.8E-11 85.9 1.0 39 526-564 28-66 (206)
500 cd03235 ABC_Metallic_Cations A 98.0 1.7E-06 3.7E-11 86.6 0.8 32 526-557 29-60 (213)
No 1
>KOG0054|consensus
Probab=100.00 E-value=6.4e-81 Score=745.95 Aligned_cols=514 Identities=37% Similarity=0.600 Sum_probs=438.0
Q ss_pred hhhhhhHHHHHHHH-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh-hhhHHHHHHHHhhhhhHHHHHHHH
Q psy845 91 VFQNMWSMLFAFLM-ICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWS-MLFAFLMICFVFPWFALPLLIITT 168 (677)
Q Consensus 91 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~ 168 (677)
-.-.+.+|..||.. +.+..-.+++.+.+++.+.+..+.+|+|.|.+.-+.+..+ ....+|+..+++..++-.++..
T Consensus 799 G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~-- 876 (1381)
T KOG0054|consen 799 GKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTL-- 876 (1381)
T ss_pred CEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHH--
Confidence 33457799999999 7777777888899999999999999999999998877765 3445555555544444333332
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhccccccc-cch----hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHH
Q psy845 169 LYHLISKVFR-SVYLRSVFQNMWSMLFAFLMICFVFPWFA-LPL----LIITTLYHLISKVFRSVYLRSVFQNMWSMLFA 242 (677)
Q Consensus 169 ~~~~~~~~~~-~~~~~~~~q~~~~~~f~~~~~~~~~~~f~-~~~----~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~ 242 (677)
.|......- -.-.+++.+ .|+..+... +|.||| +|. .|.++|.+.+++.+ ...+..++++++.+++.
T Consensus 877 -~rs~~~~~~~l~aS~~Lh~----~ml~~Ilra-pm~FFdtTP~GRILNRFSkD~~~vD~~L-p~~~~~~~~~~~~~l~~ 949 (1381)
T KOG0054|consen 877 -LRSFLFAKGGLKASRKLHD----KLLNSILRA-PMSFFDTTPTGRILNRFSKDIDTVDVLL-PFTLEFFLQSLLNVLGI 949 (1381)
T ss_pred -HHHHHHHHHHHHHHHHHHH----HHHHHHHhC-cchhcCCCCccchhhhcccchHHHHHhh-HHHHHHHHHHHHHHHHH
Confidence 221111111 223344444 444444443 678886 684 44466666676655 45778899999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHH
Q psy845 243 FLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDE 322 (677)
Q Consensus 243 ~v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~ 322 (677)
++++.+..||++++++|+.+++++++++|.+..|+++|.+..++|++.+|++|+++|+.|||+|+.|++|.++++++.|.
T Consensus 950 ~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~ 1029 (1381)
T KOG0054|consen 950 LVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDE 1029 (1381)
T ss_pred HHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 323 NSTTLFLCSMAMRWLAVRIDVLAVIAMAIITGLTVAFHGS-VSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVER 401 (677)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~g~~lv~~G~-ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eR 401 (677)
+.+..+....+++|++.+++++..+.+.+.........+. .++|.+|..++|+..+++.++..++..+++++.+.|+||
T Consensus 1030 ~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVER 1109 (1381)
T KOG0054|consen 1030 NSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVER 1109 (1381)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhH
Confidence 9999999999999999999999984444433333444444 789999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHH
Q psy845 402 INNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLL 481 (677)
Q Consensus 402 I~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi 481 (677)
+.|+. +.++|.+.+.+. ..++..||.+|+|+|+|++.+|+++.++|||||||+|+|||||||||+||||||||+
T Consensus 1110 v~eY~-~~~~E~p~~~~~-----~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~ 1183 (1381)
T KOG0054|consen 1110 VLEYT-DIPSEAPLEIEE-----SRPPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLI 1183 (1381)
T ss_pred HHHHh-cCCCCCCCCCcC-----CCCCCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHH
Confidence 99999 444442222211 125678999999999999999998888999999999999999999999999999999
Q ss_pred HHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchh
Q psy845 482 VALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA 561 (677)
Q Consensus 482 ~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ 561 (677)
++|.|+.+|.+|+|.|||+||.++
T Consensus 1184 ~aLFRl~e~~~G~I~IDgvdI~~i-------------------------------------------------------- 1207 (1381)
T KOG0054|consen 1184 LALFRLVEPAEGEILIDGVDISKI-------------------------------------------------------- 1207 (1381)
T ss_pred HHHHHhcCccCCeEEEcCeecccc--------------------------------------------------------
Confidence 999999999999999999999999
Q ss_pred hhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHH
Q psy845 562 SVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLC 639 (677)
Q Consensus 562 ~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIa 639 (677)
.+++||++++++||||+||+||+|+||||+++++|+|||+|+|+|+++++++++|+|+|+.+ +|.|+|-||||.+|
T Consensus 1208 --gL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlC 1285 (1381)
T KOG0054|consen 1208 --GLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLC 1285 (1381)
T ss_pred --cHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred HHHHHhccchhh-----------------------cccccc---e---ecccccccEEEEEeCCeeC
Q psy845 640 LARALLRKTKKK-----------------------KKSGVN---I---TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 640 IARALLr~p~IL-----------------------~~~~~T---I---LsTI~~aDrIlVLd~GrIV 677 (677)
+||||||+++|+ +++++| | ++|+.+||||+|||+|+|+
T Consensus 1286 LARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~ 1352 (1381)
T KOG0054|consen 1286 LARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVV 1352 (1381)
T ss_pred HHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEe
Confidence 999999999988 467888 3 8999999999999999985
No 2
>KOG0058|consensus
Probab=100.00 E-value=1.3e-78 Score=682.11 Aligned_cols=434 Identities=23% Similarity=0.310 Sum_probs=375.0
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHhhhccccccccc-----hhHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy845 174 SKVFRSVYLRSVFQ----NMWSMLFAFLMICFVFPWFALP-----LLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFL 244 (677)
Q Consensus 174 ~~~~~~~~~~~~~q----~~~~~~f~~~~~~~~~~~f~~~-----~~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v 244 (677)
+...+.+..+-.++ +|..++|++++. |++.|||.. ..|+|+|...+++-+ +..+...+.+.+..++.+.
T Consensus 204 ~~~~r~~~~~~a~~rv~~rlR~~lF~sil~-QdiaFFD~nktGeL~SRLtsD~~~vs~sv-s~nls~~lR~~~~~~g~~~ 281 (716)
T KOG0058|consen 204 ANAIRGGLLQYAGERVVARLRTDLFRSLLR-QDIAFFDENKTGELISRLTSDTQIVSNSV-SQNLSDGLRNLVQGFGGLG 281 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhccCCccHHHhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHhHH
Confidence 34445555554444 455599999998 789999754 378888888888866 4678899999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHH
Q psy845 245 MICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENS 324 (677)
Q Consensus 245 ~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~ 324 (677)
+|++.+|.++++.++.+|+...+.++|.+..|++.+..+++.++.+...+|.+++++|||+|+.|+++.+||.+..++..
T Consensus 282 ~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~ 361 (716)
T KOG0058|consen 282 FMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVL 361 (716)
T ss_pred HHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 325 TTLFLCSMAMRWLAVRIDVLAV--IAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERI 402 (677)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~l~~--l~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI 402 (677)
+...+.......+....++... ...++..|..++..|+++.|.+..|+.|...+..++..+...+.++.++..|.+|+
T Consensus 362 ~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rv 441 (716)
T KOG0058|consen 362 KLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERV 441 (716)
T ss_pred HHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 6554433333222222223322 24456677789999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCC-CCccccceeeEEeCCcEEEEEcCCCCChHHHH
Q psy845 403 NNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDN-WPLVLANVSFRINHGENIGIVGRTGAGKSSLL 481 (677)
Q Consensus 403 ~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~-~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi 481 (677)
+|+++ .+|..+.. + ...++ ..+|.|+|+||+|+||.+ +.+||||+||+|+|||+||+|||||+||||++
T Consensus 442 Fel~d-r~P~i~~~--G------~~~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTia 511 (716)
T KOG0058|consen 442 FELMD-RKPRIPLT--G------TLAPD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIA 511 (716)
T ss_pred HHHhc-cCCCCCCC--C------ccccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHH
Confidence 99994 34432211 1 01111 357999999999999976 45799999999999999999999999999999
Q ss_pred HHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchh
Q psy845 482 VALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA 561 (677)
Q Consensus 482 ~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ 561 (677)
+||.|||+|++|+|.+||+||+++
T Consensus 512 sLL~rfY~PtsG~IllDG~~i~~~-------------------------------------------------------- 535 (716)
T KOG0058|consen 512 SLLLRFYDPTSGRILLDGVPISDI-------------------------------------------------------- 535 (716)
T ss_pred HHHHHhcCCCCCeEEECCeehhhc--------------------------------------------------------
Confidence 999999999999999999999999
Q ss_pred hhhHHHHhhhcccccccccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHH
Q psy845 562 SVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLL 638 (677)
Q Consensus 562 ~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRI 638 (677)
+.+.||++||+|.|||.||++||+|||.|+. +++|||+++|+|+||+||||.++|+||||.+ +|.+|||||||||
T Consensus 536 --~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRI 613 (716)
T KOG0058|consen 536 --NHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRI 613 (716)
T ss_pred --CHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHH
Confidence 9999999999999999999999999999875 7899999999999999999999999999999 8999999999999
Q ss_pred HHHHHHhccchhh-----------------------cccccc---e---ecccccccEEEEEeCCeeC
Q psy845 639 CLARALLRKTKKK-----------------------KKSGVN---I---TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 639 aIARALLr~p~IL-----------------------~~~~~T---I---LsTI~~aDrIlVLd~GrIV 677 (677)
||||||+|||++| ..+++| | |+||++||+|+|+|+|+++
T Consensus 614 AIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~ 681 (716)
T KOG0058|consen 614 AIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVV 681 (716)
T ss_pred HHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEE
Confidence 9999999999987 256788 3 8999999999999999985
No 3
>KOG0055|consensus
Probab=100.00 E-value=1.2e-73 Score=671.12 Aligned_cols=432 Identities=23% Similarity=0.285 Sum_probs=353.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccc---hhHHhhhHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy845 179 SVYLRSVFQNMWSMLFAFLMICFVFPWFALP---LLIITTLYHLISKVFR--SVYLRSVFQNMWSMLFAFLMICFVFPWF 253 (677)
Q Consensus 179 ~~~~~~~~q~~~~~~f~~~~~~~~~~~f~~~---~~~~t~~~~~i~~v~~--s~~l~~il~~~~~ll~~~v~l~~~~~~l 253 (677)
++.-.++-+++..++|++++. ++++|||+| +.+++|+..|+++|-. +..+..+++++.+++.++++-++++|.+
T Consensus 732 ~~~ge~Lt~R~R~~~F~~ll~-qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~l 810 (1228)
T KOG0055|consen 732 GIAGEKLTKRLRSMMFRALLR-QEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRL 810 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555699999999 588999988 5777888888777765 5678899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 254 ALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMA 333 (677)
Q Consensus 254 al~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 333 (677)
+++++...|++.+......+......+.......+......|++++++||++|++|+++.+.|++..+...+...+....
T Consensus 811 alv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i 890 (1228)
T KOG0055|consen 811 ALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLI 890 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888877766555555555444444444555677899999999999999999999999999998887766554443
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q psy845 334 MRWLAVRIDVL--AVIAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLVP 411 (677)
Q Consensus 334 ~~~~~~~l~~l--~~l~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~~~ 411 (677)
........+.+ ..-++.+.+|.+++.+|.+++..+...+.....-...+.+......++.++..|+.+++++++. +|
T Consensus 891 ~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr-~~ 969 (1228)
T KOG0055|consen 891 SGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDR-KP 969 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcC-CC
Confidence 32221111111 1125567778889999999998877666555555566777778888999999999999999954 44
Q ss_pred CCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCC-CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC
Q psy845 412 EGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDN-WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL 490 (677)
Q Consensus 412 e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~-~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p 490 (677)
+.+.+.++ .....+.+|+|+|+||+|+||.+ +.+||+|+|++|++||++|+||||||||||++.||.|||||
T Consensus 970 ~i~~~~~~-------~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp 1042 (1228)
T KOG0055|consen 970 TIDPDSTS-------GGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDP 1042 (1228)
T ss_pred CCCCCCCC-------CCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 32222111 11112357999999999999965 45799999999999999999999999999999999999999
Q ss_pred CccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhh
Q psy845 491 SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS 570 (677)
Q Consensus 491 ~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~ 570 (677)
++|.|.|||+|++++ ++++||+
T Consensus 1043 ~~G~V~IDg~dik~l----------------------------------------------------------nl~~LR~ 1064 (1228)
T KOG0055|consen 1043 DAGKVKIDGVDIKDL----------------------------------------------------------NLKWLRK 1064 (1228)
T ss_pred CCCeEEECCcccccC----------------------------------------------------------CHHHHHH
Confidence 999999999999999 9999999
Q ss_pred hcccccccccccccchhhccccC-CCCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhcc
Q psy845 571 RLSVIPQDPVLFNGTIRYNLDPF-GRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRK 647 (677)
Q Consensus 571 ~I~~V~Qd~~LFsgTIrENI~~~-~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~ 647 (677)
+||+|+|||.||++||||||.++ .+++++|+.+|+|.|++|+||.+||+||||.+ +|.+||||||||||||||++||
T Consensus 1065 ~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRn 1144 (1228)
T KOG0055|consen 1065 QIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRN 1144 (1228)
T ss_pred hcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcC
Confidence 99999999999999999999998 45899999999999999999999999999999 7999999999999999999999
Q ss_pred chhh-----------------------cccccc---e---ecccccccEEEEEeCCeeC
Q psy845 648 TKKK-----------------------KKSGVN---I---TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 648 p~IL-----------------------~~~~~T---I---LsTI~~aDrIlVLd~GrIV 677 (677)
|+|| .+.||| | +||++|||.|+|++||+|+
T Consensus 1145 PkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~Vv 1203 (1228)
T KOG0055|consen 1145 PKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVV 1203 (1228)
T ss_pred CCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEE
Confidence 9998 356787 3 8999999999999999985
No 4
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.9e-73 Score=703.67 Aligned_cols=510 Identities=31% Similarity=0.503 Sum_probs=413.1
Q ss_pred hhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHH-HHHHHhhhhhHHHHHHHHHHHH
Q psy845 94 NMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFL-MICFVFPWFALPLLIITTLYHL 172 (677)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~ 172 (677)
+..+|..||..+.+...++++.+.++..+....+.+|.+.|.+....+-.......| ++|.+++ ++..+...
T Consensus 951 ~~~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~iy~~l~-------i~~~~~~~ 1023 (1522)
T TIGR00957 951 ELSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALG-------ILQGFAVF 1023 (1522)
T ss_pred cHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHH-------HHHHHHHH
Confidence 457899999887655555555566666677778888999998754311000101112 1221211 11122222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc-cc-h---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q psy845 173 ISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFA-LP-L---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMIC 247 (677)
Q Consensus 173 ~~~~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~-~~-~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~ 247 (677)
+...+-.+...+..+++...+|++++.. ++.||| +| + .|.++|.+.+++.+. ..+..++.+++.+++.+++++
T Consensus 1024 ~~~~~~~~~~~~~~~~l~~~l~~~ll~~-p~~ff~~~~~G~ilnR~s~Di~~id~~l~-~~~~~~~~~~~~~i~~li~~~ 1101 (1522)
T TIGR00957 1024 GYSMAVSIGGIQASRVLHQDLLHNKLRS-PMSFFERTPSGNLVNRFSKELDTVDSMIP-PVIKMFMGSLFNVIGALIVIL 1101 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHhccCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 2222224445566778888999999986 669995 45 3 566777777777664 566778889999999988888
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q psy845 248 FVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTL 327 (677)
Q Consensus 248 ~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~ 327 (677)
+.+|+++++++++.++++++++++.+..++.++.+...++++++++.|+++|+++||+|+.|+++.+++.+..+...+..
T Consensus 1102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~ 1181 (1522)
T TIGR00957 1102 LATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAY 1181 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 88998888888888888888999999999999999999999999999999999999999999999999999999888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy845 328 FLCSMAMRWLAVRIDVLAVIAMAIITGLTVA-FHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCS 406 (677)
Q Consensus 328 ~~~~~~~~~~~~~l~~l~~l~~~l~~g~~lv-~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil 406 (677)
+.......|+..+++++..++ +++.+.+.+ ..|.+++|.+++++.|+..+..++..+.+.+.+++.++.|++|+.++.
T Consensus 1182 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~ 1260 (1522)
T TIGR00957 1182 YPSIVANRWLAVRLECVGNCI-VLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYS 1260 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 776777788888887776533 333344333 468899999999999999999999999999999999999999999998
Q ss_pred hhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhc
Q psy845 407 KKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 407 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r 486 (677)
+.++|.+...++ ..++..||.+|+|+|+||+|+|+++.++||+|+||+|+|||++|||||||||||||+++|+|
T Consensus 1261 -~~~~e~~~~~~~-----~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~r 1334 (1522)
T TIGR00957 1261 -ETEKEAPWQIQE-----TAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFR 1334 (1522)
T ss_pred -cCCCCccccccC-----CCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 444443211110 11234577789999999999998765679999999999999999999999999999999999
Q ss_pred CCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHH
Q psy845 487 LVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELE 566 (677)
Q Consensus 487 ~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~ 566 (677)
+|+|++|+|.+||+|++++ +++
T Consensus 1335 l~~~~~G~I~IdG~dI~~i----------------------------------------------------------~~~ 1356 (1522)
T TIGR00957 1335 INESAEGEIIIDGLNIAKI----------------------------------------------------------GLH 1356 (1522)
T ss_pred CccCCCCeEEECCEEcccc----------------------------------------------------------CHH
Confidence 9999999999999999999 899
Q ss_pred HHhhhcccccccccccccchhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHH
Q psy845 567 TLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARAL 644 (677)
Q Consensus 567 ~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARAL 644 (677)
++|++|++|||||+||+|||||||+++++++|||+++|++++|+++++.++|+||||.+ +|.+||||||||+|||||+
T Consensus 1357 ~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARAL 1436 (1522)
T TIGR00957 1357 DLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARAL 1436 (1522)
T ss_pred HHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998889999999999999999999999999999999 8999999999999999999
Q ss_pred hccchhh-----------------------cccccc---e---ecccccccEEEEEeCCeeC
Q psy845 645 LRKTKKK-----------------------KKSGVN---I---TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 645 Lr~p~IL-----------------------~~~~~T---I---LsTI~~aDrIlVLd~GrIV 677 (677)
+|||+|+ ..+++| | ++|+++||||+|||+|+|+
T Consensus 1437 Lr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~Iv 1498 (1522)
T TIGR00957 1437 LRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVA 1498 (1522)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEE
Confidence 9999987 246778 2 7899999999999999985
No 5
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=2e-73 Score=656.31 Aligned_cols=448 Identities=24% Similarity=0.339 Sum_probs=382.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhccccccc--cchhHHhhh--HHHHHHHhhhhHHHHH
Q psy845 161 LPLLIITTLYHLISKVFRSVYLRSVFQNMWS----MLFAFLMICFVFPWFA--LPLLIITTL--YHLISKVFRSVYLRSV 232 (677)
Q Consensus 161 ~~~l~~~~~~~~~~~~~~~~~~~~~~q~~~~----~~f~~~~~~~~~~~f~--~~~~~~t~~--~~~i~~v~~s~~l~~i 232 (677)
...++++.+...++...|+++....++++-. ..|+|++.+ ++.||+ .++..++|. .+.|++.+.+..+. .
T Consensus 197 ~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~L-pl~~f~~r~~Ge~~sR~~el~~Ir~flt~~~l~-~ 274 (709)
T COG2274 197 AIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRL-PLSYFEKRSVGEIISRVRELEQIREFLTGSILT-L 274 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcC-cHHHccCCChhhHHHHHHHHHHHHHHHHHHHHH-H
Confidence 3445666777888888888888888887655 889999998 559995 566666554 44588988766665 5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHH
Q psy845 233 FQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDF 312 (677)
Q Consensus 233 l~~~~~ll~~~v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~ 312 (677)
+.++...++.+++|++++|+++++.+..++++.++...+.+..++..+..-+..+..++.+.|+++|++++|+.+.|.++
T Consensus 275 iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~ 354 (709)
T COG2274 275 IIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRF 354 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHH
Confidence 55555556666688999999999988888888888777777777766666666778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 313 VRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFV 390 (677)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~ 390 (677)
.++|++...+..+..++......+......++..+ +.++++|.+++.+|.+|.|.+.++.+....+.+|+..+++.+.
T Consensus 355 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~ 434 (709)
T COG2274 355 RSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWT 434 (709)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999998888777666655555444444433 4567788889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEE
Q psy845 391 ETELNFLAVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIV 470 (677)
Q Consensus 391 ~l~~~~~s~eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIV 470 (677)
+++....+.+|+.+++ +.++|.+.+.. ....++..|+|+|+||+|+|+++++++|+|+|++|+|||++|||
T Consensus 435 ~~q~~~~~~~rL~dil-~~~~E~~~~~~--------~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIv 505 (709)
T COG2274 435 DFQQAKVALERLGDIL-DTPPEQEGDKT--------LIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIV 505 (709)
T ss_pred HHHHHHHHHHHHHHHh-cCCcccccccc--------cccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEE
Confidence 9999999999999999 44555332210 11233467999999999999988778999999999999999999
Q ss_pred cCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhcc
Q psy845 471 GRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSS 550 (677)
Q Consensus 471 GpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~ 550 (677)
|+||||||||+|+|+|+|+|++|+|++||+|+.++
T Consensus 506 G~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i--------------------------------------------- 540 (709)
T COG2274 506 GRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDI--------------------------------------------- 540 (709)
T ss_pred CCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhc---------------------------------------------
Confidence 99999999999999999999999999999999999
Q ss_pred ccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CC
Q psy845 551 GQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QG 627 (677)
Q Consensus 551 g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G 627 (677)
+++++|++||||+||++||+|||+|||+.+. ++++||+++||+.+|+||||+++|.||||.+ +|
T Consensus 541 -------------~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G 607 (709)
T COG2274 541 -------------DLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGG 607 (709)
T ss_pred -------------CHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCC
Confidence 8999999999999999999999999999875 6788999999999999999999999999999 89
Q ss_pred CCCChHHHHHHHHHHHHhccchhh-----------------------cccccc-e-----ecccccccEEEEEeCCeeC
Q psy845 628 DQLSLGEKQLLCLARALLRKTKKK-----------------------KKSGVN-I-----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 628 ~~LSGGQRQRIaIARALLr~p~IL-----------------------~~~~~T-I-----LsTI~~aDrIlVLd~GrIV 677 (677)
.+||||||||++||||+++||+++ ...++| | ++++++||||+|||+|||+
T Consensus 608 ~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv 686 (709)
T COG2274 608 ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIV 686 (709)
T ss_pred CCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCcee
Confidence 999999999999999999999987 235677 3 7899999999999999986
No 6
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.1e-71 Score=690.75 Aligned_cols=509 Identities=29% Similarity=0.473 Sum_probs=391.3
Q ss_pred hhhHHHHHHHHhh-hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy845 94 NMWSMLFAFLMIC-FVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHL 172 (677)
Q Consensus 94 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 172 (677)
...+|..||...+ +.+....+.+.++..++...+.+|.+.|.+....+.... ..|...+ +.+.++..+..+
T Consensus 900 ~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~--~~~~~i~------~~l~~~~~i~~~ 971 (1622)
T PLN03130 900 SWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGP--LFYNLIY------ALLSFGQVLVTL 971 (1622)
T ss_pred CHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCch--hHHHHHH------HHHHHHHHHHHH
Confidence 3567888887733 222222222333344455566788888887644321111 1122111 111111222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc-cc-h---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q psy845 173 ISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFA-LP-L---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMIC 247 (677)
Q Consensus 173 ~~~~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~-~~-~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~ 247 (677)
+....-.+...+..+++...+|+|++.. +++||| +| + .|.++|.+.+++.. +..+..++..++.+++.+++++
T Consensus 972 ~~~~~~~~~~~~~~~~L~~~l~~~ll~~-p~~ffd~~~~G~IlnR~s~Di~~id~~l-~~~~~~~~~~~~~~i~~~i~i~ 1049 (1622)
T PLN03130 972 LNSYWLIMSSLYAAKRLHDAMLGSILRA-PMSFFHTNPLGRIINRFAKDLGDIDRNV-AVFVNMFLGQIFQLLSTFVLIG 1049 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHhccCCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 2222234445666778888999999986 669995 45 3 55566666666655 3456778888888888888888
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q psy845 248 FVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTL 327 (677)
Q Consensus 248 ~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~ 327 (677)
+++|+..++++|+.++++.+.+++.+..++.++.+..++++++++++|+++|+++||+|+.++++.+++++..+...+..
T Consensus 1050 ~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~ 1129 (1622)
T PLN03130 1050 IVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFT 1129 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 88887666666666666667778888889999988899999999999999999999999999999998888888777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 328 FLCSMAMRWLAVRIDVLAVIAMAIITGLTVAFHG-SV-----SPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVER 401 (677)
Q Consensus 328 ~~~~~~~~~~~~~l~~l~~l~~~l~~g~~lv~~G-~l-----s~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eR 401 (677)
+.......|+..+++++.. +++++.+...+..+ .. ..+.++.+++|+..+..++..+.+...+++.++.|++|
T Consensus 1130 ~~~~~~~~wl~~~l~~~~~-~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveR 1208 (1622)
T PLN03130 1130 LVNMSSNRWLAIRLETLGG-LMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVER 1208 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6656667787777776655 22333333334333 22 14667788888889999999999999999999999999
Q ss_pred HHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHH
Q psy845 402 INNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLL 481 (677)
Q Consensus 402 I~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi 481 (677)
+.++. +.++|.+...++ ..++..||.+|+|+|+||+|+|+++.++||+|+||+|+|||+||||||||||||||+
T Consensus 1209 i~e~~-~~~~E~~~~~~~-----~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl 1282 (1622)
T PLN03130 1209 VGTYI-DLPSEAPLVIEN-----NRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSML 1282 (1622)
T ss_pred HHHHh-CCCCcccccccC-----CCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHH
Confidence 99998 444443211110 112335677789999999999987656799999999999999999999999999999
Q ss_pred HHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchh
Q psy845 482 VALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA 561 (677)
Q Consensus 482 ~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ 561 (677)
++|+|+|+|++|+|.+||+|++++
T Consensus 1283 ~lL~rl~~p~~G~I~IDG~dI~~i-------------------------------------------------------- 1306 (1622)
T PLN03130 1283 NALFRIVELERGRILIDGCDISKF-------------------------------------------------------- 1306 (1622)
T ss_pred HHHhCcCCCCCceEEECCEecccC--------------------------------------------------------
Confidence 999999999999999999999999
Q ss_pred hhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHH
Q psy845 562 SVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLC 639 (677)
Q Consensus 562 ~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIa 639 (677)
+++++|++|++|||||+||+|||||||+++++++|+|+++|+++++++++++++|+||||.+ +|.+||||||||+|
T Consensus 1307 --~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrla 1384 (1622)
T PLN03130 1307 --GLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLS 1384 (1622)
T ss_pred --CHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHH
Confidence 89999999999999999999999999999888999999999999999999999999999999 89999999999999
Q ss_pred HHHHHhccchhh-----------------------cccccc---e---ecccccccEEEEEeCCeeC
Q psy845 640 LARALLRKTKKK-----------------------KKSGVN---I---TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 640 IARALLr~p~IL-----------------------~~~~~T---I---LsTI~~aDrIlVLd~GrIV 677 (677)
||||++|||+|+ ..+++| | ++|+++||||+|||+|+|+
T Consensus 1385 LARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~Iv 1451 (1622)
T PLN03130 1385 LARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVV 1451 (1622)
T ss_pred HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEE
Confidence 999999999987 246778 2 7899999999999999985
No 7
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=4.9e-70 Score=617.22 Aligned_cols=440 Identities=26% Similarity=0.380 Sum_probs=364.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc-cc----hhHHhhhHHHHHHHhhhhHHHHHHHHHHHHH
Q psy845 166 ITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFA-LP----LLIITTLYHLISKVFRSVYLRSVFQNMWSML 240 (677)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~-~~----~~~~t~~~~~i~~v~~s~~l~~il~~~~~ll 240 (677)
+..+.++......++....+.+++...+|.+++.+. ..||+ .+ ..++|+|.+.+.+.+... ...+...++.++
T Consensus 64 ~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~-~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~-~~~~~~~~~~~~ 141 (567)
T COG1132 64 LGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLP-LSFFDKAKSGDLISRLTNDVEAVSNLVSTV-LVLVFTSILLLI 141 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-HHHhCcCCcchHHHHHHhhHHHHHHHHHHh-HHHHHHHHHHHH
Confidence 444455555555555557777888889999999985 48995 44 377788888888877654 444555788888
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHH
Q psy845 241 FAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQY 320 (677)
Q Consensus 241 ~~~v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~ 320 (677)
+.+++++..+|.++++++...+++.+....+.++.++..+..++..+++++.+.|+++|++++|+|+.++...+++++..
T Consensus 142 ~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~ 221 (567)
T COG1132 142 GSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEAN 221 (567)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHH
Confidence 89989999999999888888788777777777666777777788889999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 321 DENSTTLFLCSMAMRWLAVRIDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLA 398 (677)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s 398 (677)
++..+.............+....+..+ ..++..|.+.+.+|.+++|.+.+++.+...+..|+..+......++.+..|
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 301 (567)
T COG1132 222 EELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAA 301 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776665443333333332223333222 344556666788999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChH
Q psy845 399 VERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKS 478 (677)
Q Consensus 399 ~eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKS 478 (677)
.+|+.+++++ +++...+.. . .....++|+|+||+|+|+++ +++|+|+||+++|||++|||||||||||
T Consensus 302 ~~ri~~~l~~-~~~~~~~~~--------~--~~~~~~~I~f~~vsf~y~~~-~~vl~~is~~i~~Ge~vaiVG~sGsGKS 369 (567)
T COG1132 302 AERLFELLDE-EPEVEDPPD--------P--LKDTIGSIEFENVSFSYPGK-KPVLKDISFSIEPGEKVAIVGPSGSGKS 369 (567)
T ss_pred HHHHHHHHcC-CccccCCCC--------C--CCCCCCeEEEEEEEEEcCCC-CccccCceEEEcCCCEEEEECCCCCCHH
Confidence 9999999943 332111110 0 12245789999999999864 4699999999999999999999999999
Q ss_pred HHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhcccccccccc
Q psy845 479 SLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDF 558 (677)
Q Consensus 479 TLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~ 558 (677)
|++++|+|+|+|++|+|++||+|++++
T Consensus 370 Tl~~LL~r~~~~~~G~I~idg~dI~~i----------------------------------------------------- 396 (567)
T COG1132 370 TLIKLLLRLYDPTSGEILIDGIDIRDI----------------------------------------------------- 396 (567)
T ss_pred HHHHHHhccCCCCCCeEEECCEehhhc-----------------------------------------------------
Confidence 999999999999999999999999999
Q ss_pred chhhhhHHHHhhhcccccccccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHH
Q psy845 559 DIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEK 635 (677)
Q Consensus 559 ~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQR 635 (677)
+.++||++|++|||||+||+|||+|||+++. +++|||+++|++.++++||++++|+||||.+ +|.+||||||
T Consensus 397 -----~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQr 471 (567)
T COG1132 397 -----SLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQR 471 (567)
T ss_pred -----CHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHH
Confidence 8999999999999999999999999999986 4899999999999999999999999999999 7999999999
Q ss_pred HHHHHHHHHhccchhh-----------------------cccccc---e---ecccccccEEEEEeCCeeC
Q psy845 636 QLLCLARALLRKTKKK-----------------------KKSGVN---I---TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 636 QRIaIARALLr~p~IL-----------------------~~~~~T---I---LsTI~~aDrIlVLd~GrIV 677 (677)
||+|||||++||||++ ..++|| | ++|+++||||+|||+|+|+
T Consensus 472 QrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~ 542 (567)
T COG1132 472 QRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIV 542 (567)
T ss_pred HHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEE
Confidence 9999999999999987 135667 3 7899999999999999974
No 8
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.3e-70 Score=676.95 Aligned_cols=507 Identities=30% Similarity=0.506 Sum_probs=383.7
Q ss_pred hhhHHHHHHHHhhhhhhhhHHHHHHH---HHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHhhhhhHHHHHHHHHH
Q psy845 94 NMWSMLFAFLMICFVFPWFALPLLII---TTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLY 170 (677)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 170 (677)
+..+|..|+...+- .|+.+.++++ ..+....+..|++.|-+.-..+..+ -..|... + +.+.+...+.
T Consensus 897 ~~~vy~~y~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~--~~~~l~~----y--~~l~~~~~~~ 966 (1495)
T PLN03232 897 SWNVLMRYNKAVGG--LWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTPKSYS--PGFYIVV----Y--ALLGFGQVAV 966 (1495)
T ss_pred cHHHHHHHHHHcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC--cchHHHH----H--HHHHHHHHHH
Confidence 45678888887542 2222222333 3344455567777776542211111 1122111 1 1111112222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc-cc-h---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy845 171 HLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFA-LP-L---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLM 245 (677)
Q Consensus 171 ~~~~~~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~-~~-~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~ 245 (677)
.++....-.+...+..+++...+|++++.. +++||| +| + .|.|+|.+.+++.+.. .+..++..++.+++.+++
T Consensus 967 ~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~-p~~ff~~~~~G~ilnr~s~Di~~id~~l~~-~~~~~~~~~~~~i~~~i~ 1044 (1495)
T PLN03232 967 TFTNSFWLISSSLHAAKRLHDAMLNSILRA-PMLFFHTNPTGRVINRFSKDIGDIDRNVAN-LMNMFMNQLWQLLSTFAL 1044 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CeeeeCcCCchHHHHHhHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 222222334556667788888999999996 669995 45 3 5666677777776543 666788888888888877
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHH
Q psy845 246 ICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENST 325 (677)
Q Consensus 246 l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~ 325 (677)
++..+++..++++++.++++....++.+..++.++.+..+++++.++++|+++|+++||+|+.++++.+++++..+...+
T Consensus 1045 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~ 1124 (1495)
T PLN03232 1045 IGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIR 1124 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 77777766655666655556666777778888888889999999999999999999999999999999988888887776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 326 TLFLCSMAMRWLAVRIDVLAVIAMAIITGLTVAF-HGSVS-----PALAGLALTYASHVTGLLQFTVRVFVETELNFLAV 399 (677)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~l~~l~~~l~~g~~lv~-~G~ls-----~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~ 399 (677)
..........|+..+++.+.. +++.+.+...+. .|.+. .+.++.+++|+..+.++++.+.+.+.+++.++.|+
T Consensus 1125 ~~~~~~~~~~wl~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~ 1203 (1495)
T PLN03232 1125 FTLANTSSNRWLTIRLETLGG-VMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSV 1203 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665555556677666655543 222333333333 34321 34566778888899999999999999999999999
Q ss_pred HHHHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHH
Q psy845 400 ERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSS 479 (677)
Q Consensus 400 eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKST 479 (677)
||+.+++ +.++|.+...++ ..++..||.+|+|+|+||+|+|+++.++||+|+||+|+|||++||||||||||||
T Consensus 1204 eRi~e~~-~~~~e~~~~~~~-----~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKST 1277 (1495)
T PLN03232 1204 ERVGNYI-DLPSEATAIIEN-----NRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSS 1277 (1495)
T ss_pred HHHHHHh-cCCccccccccC-----CCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHH
Confidence 9999998 444443211110 0122346777899999999999766567999999999999999999999999999
Q ss_pred HHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 480 LLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 480 Li~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
|+++|+|+|+|++|+|.+||+|++++
T Consensus 1278 L~~lL~rl~~p~~G~I~IdG~di~~i------------------------------------------------------ 1303 (1495)
T PLN03232 1278 MLNALFRIVELEKGRIMIDDCDVAKF------------------------------------------------------ 1303 (1495)
T ss_pred HHHHHhCCCcCCCceEEECCEEhhhC------------------------------------------------------
Confidence 99999999999999999999999999
Q ss_pred hhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHH
Q psy845 560 IASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQL 637 (677)
Q Consensus 560 ~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQR 637 (677)
+++++|++|++|||||+||+|||||||+++++++|+|+++|+++++++++++++|+|+||.+ +|.+||||||||
T Consensus 1304 ----~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQr 1379 (1495)
T PLN03232 1304 ----GLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQL 1379 (1495)
T ss_pred ----CHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHH
Confidence 88999999999999999999999999999888999999999999999999999999999999 899999999999
Q ss_pred HHHHHHHhccchhh-----------------------cccccc---e---ecccccccEEEEEeCCeeC
Q psy845 638 LCLARALLRKTKKK-----------------------KKSGVN---I---TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 638 IaIARALLr~p~IL-----------------------~~~~~T---I---LsTI~~aDrIlVLd~GrIV 677 (677)
+|||||++|+|+|+ ..+++| | ++|+++||||+|||+|+|+
T Consensus 1380 laLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~iv 1448 (1495)
T PLN03232 1380 LSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVL 1448 (1495)
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEE
Confidence 99999999999987 236778 2 7899999999999999985
No 9
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=7.4e-70 Score=673.25 Aligned_cols=514 Identities=28% Similarity=0.443 Sum_probs=396.9
Q ss_pred hhhHHHHHHHHhh-hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy845 94 NMWSMLFAFLMIC-FVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHL 172 (677)
Q Consensus 94 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 172 (677)
+.++|..||.... +.+.++.+-++++..+....+..|.+.|.+.-++.... ...++|.++..+. ++...++.
T Consensus 947 ~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~---~~l~~y~~~~~~~----~~~~~l~~ 1019 (1560)
T PTZ00243 947 PWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFKLSAA---TYLYVYLGIVLLG----TFSVPLRF 1019 (1560)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcc---cHHHHHHHHHHHH----HHHHHHHH
Confidence 4567888887643 33333333333445566777889999998754322111 1111222211111 11112221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc-cc-h---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q psy845 173 ISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFA-LP-L---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMIC 247 (677)
Q Consensus 173 ~~~~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~-~~-~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~ 247 (677)
.......+...+++..++|++++.. ++.||| .| + .|+|+|.+.+++.+.. .+..++..++.+++.+++++
T Consensus 1020 ---~~~~~~~~~~~~~l~~~l~~~ll~~-p~~ffd~~~~G~ilnR~s~Di~~id~~l~~-~l~~~~~~~~~~i~~li~~~ 1094 (1560)
T PTZ00243 1020 ---FLSYEAMRRGSRNMHRDLLRSVSRG-TMSFFDTTPLGRILNRFSRDIDILDNTLPM-SYLYLLQCLFSICSSILVTS 1094 (1560)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHcC-ChhhccCCCccHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 2222333444567888999999986 569995 45 3 6667777777776643 45668888899999888888
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q psy845 248 FVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTL 327 (677)
Q Consensus 248 ~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~ 327 (677)
+.+|+++++++++.+++..+.+++.+..++.++.....++++.++++|+++|+++||+|++|+.+.+++.+..+...+..
T Consensus 1095 ~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~ 1174 (1560)
T PTZ00243 1095 ASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCS 1174 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHH
Confidence 88888777777777677778888999999999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH--HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 328 FLCSMAMRWLAVRIDVLAVIAM--AIITGLTV--AFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERIN 403 (677)
Q Consensus 328 ~~~~~~~~~~~~~l~~l~~l~~--~l~~g~~l--v~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~ 403 (677)
+.......|...+.+++..+.. +.+++++. ...+.+++|.++++++++..+..++..+.+.+.+++.++.|++|+.
T Consensus 1175 ~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~ 1254 (1560)
T PTZ00243 1175 YLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLL 1254 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766677888877776655322 22223332 2345678999999999999999999999999999999999999999
Q ss_pred HhhhhcCCCCCCCCCC-------c----cc-------cccccc---cCCCCCccEEEEeeeEEeCCCCCccccceeeEEe
Q psy845 404 NCSKKLVPEGRGPITS-------E----FG-------QVKVKL---ADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRIN 462 (677)
Q Consensus 404 eil~~~~~e~~~~~~~-------~----~~-------~~~~~~---~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~ 462 (677)
+++++.++|+..+.+. . .+ +....+ ..++..|+|+|+||+|+|+++.++||+|+||+|+
T Consensus 1255 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~ 1334 (1560)
T PTZ00243 1255 YYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIA 1334 (1560)
T ss_pred HHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEEC
Confidence 9985433321100000 0 00 000001 1123457899999999998766679999999999
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHH
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVAL 542 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~ 542 (677)
|||+||||||||||||||+++|+|+|+|++|+|.+||+|++++
T Consensus 1335 ~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i------------------------------------- 1377 (1560)
T PTZ00243 1335 PREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAY------------------------------------- 1377 (1560)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccC-------------------------------------
Confidence 9999999999999999999999999999999999999999999
Q ss_pred HHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHHHHccchhhHhhhhcccC
Q psy845 543 FRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLD 622 (677)
Q Consensus 543 ~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~Gld 622 (677)
+.+++|++|++|||||+||+|||||||+++++++|+|+++|++++|+++++.++|+|||
T Consensus 1378 ---------------------~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gld 1436 (1560)
T PTZ00243 1378 ---------------------GLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGID 1436 (1560)
T ss_pred ---------------------CHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCccccc
Confidence 88999999999999999999999999999888999999999999999999999999999
Q ss_pred CCC--CCCCCChHHHHHHHHHHHHhcc-chhh-----------------------cccccc---e---ecccccccEEEE
Q psy845 623 SDV--QGDQLSLGEKQLLCLARALLRK-TKKK-----------------------KKSGVN---I---TRPVTSCDKVLV 670 (677)
Q Consensus 623 T~v--~G~~LSGGQRQRIaIARALLr~-p~IL-----------------------~~~~~T---I---LsTI~~aDrIlV 670 (677)
|.+ +|.||||||||||||||||+|+ |+++ .++++| | ++|+++||||+|
T Consensus 1437 t~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlV 1516 (1560)
T PTZ00243 1437 SRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIV 1516 (1560)
T ss_pred ccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEE
Confidence 999 8999999999999999999996 7876 246778 2 789999999999
Q ss_pred EeCCeeC
Q psy845 671 MDNGQAL 677 (677)
Q Consensus 671 Ld~GrIV 677 (677)
||+|+|+
T Consensus 1517 Ld~G~Vv 1523 (1560)
T PTZ00243 1517 MDHGAVA 1523 (1560)
T ss_pred EECCEEE
Confidence 9999985
No 10
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3e-68 Score=604.33 Aligned_cols=437 Identities=18% Similarity=0.205 Sum_probs=342.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc--cch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy845 169 LYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFA--LPL---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAF 243 (677)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~--~~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~ 243 (677)
+.+.+...+.....+++-+++..++|+|+.... ..||+ .++ .++|.|.+.+++.+. ..+..++.+++.+++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~-~~~~~~~~~g~l~s~~~~dv~~i~~~~~-~~~~~~~~~~~~~~~~~ 155 (588)
T PRK11174 78 LLAWLRERVGFKAGQHIRQQIRQQVLDKLQQLG-PAWIQGKPAGSWATLVLEQVEDMHDFYA-RYLPQMALAVLVPLLIL 155 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-chhhccCCHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 334334344444455555666679999999875 48984 344 566677777777553 45667888888888888
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHH
Q psy845 244 LMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDEN 323 (677)
Q Consensus 244 v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~ 323 (677)
+++++++|++++++++..++..++...+.++.++..+..++..+++++.+.|.++|+++||+|+.|+++.+++++..++.
T Consensus 156 ~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~ 235 (588)
T PRK11174 156 IAVFPINWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDF 235 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHH
Confidence 89999999999888888888777777888877777777777778899999999999999999999999999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcCCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 324 STTLFLCSMAMRWLAVRIDVLAVIAM--AIITGLTVAFHGSVSPALA---------GLALTYASHVTGLLQFTVRVFVET 392 (677)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~~l~~l~~--~l~~g~~lv~~G~ls~g~l---------~~~l~~~~~l~~~l~~l~~~~~~l 392 (677)
.+..................+..+.. +++++++. ..|.++.|.+ .+++.+...+..|+..+...+.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~ 314 (588)
T PRK11174 236 RQRTMEVLRMAFLSSAVLEFFASISIALVAVYFGFS-YLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAK 314 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 76654433332223333333322211 11222222 2366666543 222355667789999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcC
Q psy845 393 ELNFLAVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGR 472 (677)
Q Consensus 393 ~~~~~s~eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGp 472 (677)
+++..+.+|+.++++. +++.... . ....+.+..++|+|+||+|.|+++ +++|+|+||+++|||++|||||
T Consensus 315 ~~~~~~~~ri~~~l~~-~~~~~~~-~-------~~~~~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~ 384 (588)
T PRK11174 315 AQAVGAAESLVTFLET-PLAHPQQ-G-------EKELASNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGP 384 (588)
T ss_pred HHHHHHHHHHHHHHcC-CCcccCC-C-------ccccCCCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECC
Confidence 9999999999999843 3221111 0 000011123579999999988655 4699999999999999999999
Q ss_pred CCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhcccc
Q psy845 473 TGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQ 552 (677)
Q Consensus 473 SGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~ 552 (677)
||||||||+++|+|+| |++|+|.+||+|++++
T Consensus 385 SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~----------------------------------------------- 416 (588)
T PRK11174 385 SGAGKTSLLNALLGFL-PYQGSLKINGIELREL----------------------------------------------- 416 (588)
T ss_pred CCCCHHHHHHHHhcCC-CCCcEEEECCEecccC-----------------------------------------------
Confidence 9999999999999999 9999999999999999
Q ss_pred ccccccchhhhhHHHHhhhcccccccccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCC
Q psy845 553 IKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQ 629 (677)
Q Consensus 553 i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~ 629 (677)
+.+++|++|+||||||+||+|||||||++++ +++|||+++|++.+++++|++++|+||||.+ +|.+
T Consensus 417 -----------~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~ 485 (588)
T PRK11174 417 -----------DPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAG 485 (588)
T ss_pred -----------CHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCC
Confidence 8899999999999999999999999999874 6999999999999999999999999999999 8999
Q ss_pred CChHHHHHHHHHHHHhccchhh-----------------------cccccc-e-----ecccccccEEEEEeCCeeC
Q psy845 630 LSLGEKQLLCLARALLRKTKKK-----------------------KKSGVN-I-----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 630 LSGGQRQRIaIARALLr~p~IL-----------------------~~~~~T-I-----LsTI~~aDrIlVLd~GrIV 677 (677)
||||||||||||||+++||+++ ..+++| | ++++++||+|+||++|+++
T Consensus 486 LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~ 562 (588)
T PRK11174 486 LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIV 562 (588)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEe
Confidence 9999999999999999999987 135677 2 6788999999999999985
No 11
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=7.7e-68 Score=611.77 Aligned_cols=437 Identities=20% Similarity=0.240 Sum_probs=352.3
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhcccccccc--ch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHH
Q psy845 169 LYHLISKVFRSVYLRS----VFQNMWSMLFAFLMICFVFPWFAL--PL---LIITTLYHLISKVFRSVYLRSVFQNMWSM 239 (677)
Q Consensus 169 ~~~~~~~~~~~~~~~~----~~q~~~~~~f~~~~~~~~~~~f~~--~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~l 239 (677)
+.+.+....+++.... +..++...+|+|++.. +..||+. ++ .+++ +.+.+++.+.+..+ ..+.+....
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~-~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~-~~~~~~~~~ 263 (686)
T TIGR03797 187 VGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRL-PVSFFRQYSTGDLASRAM-GISQIRRILSGSTL-TTLLSGIFA 263 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3344444555555544 4445555899999987 4589943 34 4444 45666776655444 445555556
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHH
Q psy845 240 LFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQ 319 (677)
Q Consensus 240 l~~~v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~ 319 (677)
++.++++++++|+++++++++.+++..+...+.+..++..+...+..++.++.+.|+++|+++||+++.|+++.++|++.
T Consensus 264 ~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~ 343 (686)
T TIGR03797 264 LLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKL 343 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHH
Confidence 67777888999999988887777777777777777666666666667788999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 320 YDENSTTLFLCSMAMRWLAVRIDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFL 397 (677)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~ 397 (677)
.++..+...+......+.......+..+ +.++++|.+++.+|.+|.|.+.++.++...+..|+..+...+.+++.+..
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~ 423 (686)
T TIGR03797 344 FSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIP 423 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887776665554444444333333222 33456677788899999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCCh
Q psy845 398 AVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGK 477 (677)
Q Consensus 398 s~eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGK 477 (677)
+.+|+.++++ .++|...+ . ....+..++|+++||+|+|+++++++|+|+||+|+|||++||||||||||
T Consensus 424 ~~~ri~~~l~-~~~e~~~~-~---------~~~~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGK 492 (686)
T TIGR03797 424 LWERAKPILE-ALPEVDEA-K---------TDPGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGK 492 (686)
T ss_pred HHHHHHHHhc-CCcccccC-c---------CCCCCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCH
Confidence 9999999984 33332111 0 00112346899999999997655679999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccc
Q psy845 478 SSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 557 (677)
Q Consensus 478 STLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~ 557 (677)
|||+|+|+|+|+|++|+|++||+|++++
T Consensus 493 STLlklL~gl~~p~~G~I~idg~~i~~~---------------------------------------------------- 520 (686)
T TIGR03797 493 STLLRLLLGFETPESGSVFYDGQDLAGL---------------------------------------------------- 520 (686)
T ss_pred HHHHHHHhCCCCCCCCEEEECCEEcCcC----------------------------------------------------
Confidence 9999999999999999999999999999
Q ss_pred cchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHH
Q psy845 558 FDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEK 635 (677)
Q Consensus 558 ~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQR 635 (677)
+.+++|+++|||||||++|+|||+|||+++++++|||+++|++.++++++++++|+|+||.+ +|.+||||||
T Consensus 521 ------~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQr 594 (686)
T TIGR03797 521 ------DVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQR 594 (686)
T ss_pred ------CHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHH
Confidence 88999999999999999999999999998766899999999999999999999999999999 8999999999
Q ss_pred HHHHHHHHHhccchhhc---------------------ccccc-e-----ecccccccEEEEEeCCeeC
Q psy845 636 QLLCLARALLRKTKKKK---------------------KSGVN-I-----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 636 QRIaIARALLr~p~IL~---------------------~~~~T-I-----LsTI~~aDrIlVLd~GrIV 677 (677)
|||+||||+++||+++. ..++| | ++++++||||+|||+|+++
T Consensus 595 QRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~~D~Iivl~~G~iv 663 (686)
T TIGR03797 595 QRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRNADRIYVLDAGRVV 663 (686)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHcCCEEEEEECCEEE
Confidence 99999999999999871 12467 2 6688999999999999985
No 12
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=2.3e-66 Score=602.48 Aligned_cols=439 Identities=21% Similarity=0.297 Sum_probs=360.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc-c-h---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHH
Q psy845 168 TLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFAL-P-L---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFA 242 (677)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~~-~-~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~ 242 (677)
.+...+......+..+++..++...+|+++... +..||+. + + .++|+|.+.+++.+. ..+..++.+++.++++
T Consensus 215 ~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~-~~~~f~~~~~G~i~srl~~Di~~i~~~~~-~~~~~~l~~~~~~i~~ 292 (711)
T TIGR00958 215 SVSAGLRGGSFNYTMARINLRIREDLFRSLLRQ-DLGFFDENKTGELTSRLSSDTQTMSRSLS-LNVNVLLRNLVMLLGL 292 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHcCCCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 333444444445556666677777999999886 5689953 3 3 666777777777654 4566788888899999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHH
Q psy845 243 FLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDE 322 (677)
Q Consensus 243 ~v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~ 322 (677)
+++++.++|++++++++..++..++.+.+.++.++..+..++..++.++.+.|.++|+++||+|+.|+++.++|++..++
T Consensus 293 ~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~ 372 (711)
T TIGR00958 293 LGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEE 372 (711)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHH
Confidence 99999999999988888888888888888888887777777778889999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 323 NSTTLFLCSMAMR---WLAVRIDVLAVIAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAV 399 (677)
Q Consensus 323 ~~~~~~~~~~~~~---~~~~~l~~l~~l~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~ 399 (677)
..+...+...... +.......+.. +.++.+|.+++.+|.+++|.+.+++.|...+.+|+..+.....+++++..+.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~ 451 (711)
T TIGR00958 373 TLQLNKRKALAYAGYLWTTSVLGMLIQ-VLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGAS 451 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7665544332222 22222222222 3345567778889999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCC-CCccccceeeEEeCCcEEEEEcCCCCChH
Q psy845 400 ERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDN-WPLVLANVSFRINHGENIGIVGRTGAGKS 478 (677)
Q Consensus 400 eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~-~~~VLknISl~I~~GE~VAIVGpSGSGKS 478 (677)
+|+.++++. +++.+.+.+ ....+..+.|+|+||+|+|+++ ++++|+|+||+|+|||++|||||||||||
T Consensus 452 ~ri~~~l~~-~~~~~~~~~---------~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKS 521 (711)
T TIGR00958 452 EKVFEYLDR-KPNIPLTGT---------LAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKS 521 (711)
T ss_pred HHHHHHhCC-CCCCCCCCC---------CCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHH
Confidence 999999943 332211100 0111245789999999999864 35799999999999999999999999999
Q ss_pred HHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhcccccccccc
Q psy845 479 SLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDF 558 (677)
Q Consensus 479 TLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~ 558 (677)
||+++|+|+|+|++|+|.+||+|++++
T Consensus 522 TLl~lL~gl~~p~~G~I~idg~~i~~~----------------------------------------------------- 548 (711)
T TIGR00958 522 TVAALLQNLYQPTGGQVLLDGVPLVQY----------------------------------------------------- 548 (711)
T ss_pred HHHHHHHhccCCCCCEEEECCEEHHhc-----------------------------------------------------
Confidence 999999999999999999999999998
Q ss_pred chhhhhHHHHhhhcccccccccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHH
Q psy845 559 DIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEK 635 (677)
Q Consensus 559 ~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQR 635 (677)
+.+++|++|+||||||++|+|||||||+++. +++|||+++|++.++++++++++|+|+||.+ +|.+||||||
T Consensus 549 -----~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQk 623 (711)
T TIGR00958 549 -----DHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQK 623 (711)
T ss_pred -----CHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHH
Confidence 8899999999999999999999999999874 6889999999999999999999999999999 7999999999
Q ss_pred HHHHHHHHHhccchhh---------------------cccccc-e-----ecccccccEEEEEeCCeeC
Q psy845 636 QLLCLARALLRKTKKK---------------------KKSGVN-I-----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 636 QRIaIARALLr~p~IL---------------------~~~~~T-I-----LsTI~~aDrIlVLd~GrIV 677 (677)
||+|||||++|||+++ ..+++| | ++++++||+|+|||+|+|+
T Consensus 624 QRlalARALl~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~iv 692 (711)
T TIGR00958 624 QRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVERADQILVLKKGSVV 692 (711)
T ss_pred HHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHHhCCEEEEEECCEEE
Confidence 9999999999999987 134677 2 5678899999999999985
No 13
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=8.4e-68 Score=653.71 Aligned_cols=436 Identities=27% Similarity=0.450 Sum_probs=362.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccc-cc-h---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy845 179 SVYLRSVFQNMWSMLFAFLMICFVFPWFA-LP-L---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWF 253 (677)
Q Consensus 179 ~~~~~~~~q~~~~~~f~~~~~~~~~~~f~-~~-~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~l 253 (677)
.+...+..+++...+|.+++.. ++.||| +| + .|+++|.+.+++.+. ..+..++.+++.+++.++++++++|++
T Consensus 950 ~~~~~~~~~~l~~~l~~~ll~~-p~~ff~~~~~G~ilnRfs~Di~~id~~l~-~~~~~~~~~~~~~i~~l~~i~~~~p~l 1027 (1490)
T TIGR01271 950 VHTLLTVSKRLHEQMLHSVLQA-PMAVLNTMKAGRILNRFTKDMAIIDDMLP-LTLFDFIQLTLIVLGAIFVVSVLQPYI 1027 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-CHHHhCCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566788888999999986 569995 46 3 566667777777554 455678888899999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 254 ALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMA 333 (677)
Q Consensus 254 al~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 333 (677)
+++++++.++++.+.+++.+..++.++.+...++++.+++.|+++|+.+||+|+.++++.+++.+..+...+..+.....
T Consensus 1028 ~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1107 (1490)
T TIGR01271 1028 FIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLST 1107 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777777777788888998899999999999999999999999999999999999999999999998876666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy845 334 MRWLAVRIDVLAVIAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLVPEG 413 (677)
Q Consensus 334 ~~~~~~~l~~l~~l~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~~~e~ 413 (677)
..|+..+++++..+..+ ..++..+..+.++.|.++.+++|+..+.+++..+.+.+.+++..+.|++|+.++. +.++|.
T Consensus 1108 ~~wl~~~~~~i~~~~~~-~~~~l~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~-~~~~e~ 1185 (1490)
T TIGR01271 1108 LRWFQMRIDIIFVFFFI-AVTFIAIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFI-DLPQEE 1185 (1490)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCcc
Confidence 77888777765542222 1222222233466778888899999999999999999999999999999999998 444442
Q ss_pred CCCCCCccc---------cccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHH
Q psy845 414 RGPITSEFG---------QVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVAL 484 (677)
Q Consensus 414 ~~~~~~~~~---------~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL 484 (677)
..+.+.... +....+..||..|.|+|+||+|+|+++.++||+|+||+|+|||+||||||||||||||+++|
T Consensus 1186 ~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL 1265 (1490)
T TIGR01271 1186 PRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSAL 1265 (1490)
T ss_pred ccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 211110000 00012235777789999999999987667899999999999999999999999999999999
Q ss_pred hcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhh
Q psy845 485 FRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE 564 (677)
Q Consensus 485 ~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~ 564 (677)
+|+|+ ++|+|.|||+|++++ +
T Consensus 1266 ~rl~~-~~G~I~IdG~di~~i----------------------------------------------------------~ 1286 (1490)
T TIGR01271 1266 LRLLS-TEGEIQIDGVSWNSV----------------------------------------------------------T 1286 (1490)
T ss_pred hhhcC-CCcEEEECCEEcccC----------------------------------------------------------C
Confidence 99997 899999999999999 8
Q ss_pred HHHHhhhcccccccccccccchhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHH
Q psy845 565 LETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLAR 642 (677)
Q Consensus 565 ~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIAR 642 (677)
.+++|+++++|||||+||+|||||||+++++++|+|+++|++++++++++.++|+|+||.+ +|.+||||||||+||||
T Consensus 1287 ~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LAR 1366 (1490)
T TIGR01271 1287 LQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLAR 1366 (1490)
T ss_pred HHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999888999999999999999999999999999999 89999999999999999
Q ss_pred HHhccchhh-----------------------cccccce------ecccccccEEEEEeCCeeC
Q psy845 643 ALLRKTKKK-----------------------KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 643 ALLr~p~IL-----------------------~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
|++|+|+|+ ..+++|+ ++|+++||||+|||+|+|+
T Consensus 1367 ALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~iv 1430 (1490)
T TIGR01271 1367 SILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVK 1430 (1490)
T ss_pred HHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEE
Confidence 999999987 2466782 6789999999999999985
No 14
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1.7e-67 Score=610.91 Aligned_cols=438 Identities=21% Similarity=0.280 Sum_probs=355.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc--ch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHH
Q psy845 168 TLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFAL--PL---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFA 242 (677)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~~--~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~ 242 (677)
.+.+.+.+.+..+..+++..++...+|+|++.+. +.||+. ++ .+++ +.+.+.+.+.+..+ ..+.++..+++.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~-~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~-~~~~~~~~~~~~ 286 (708)
T TIGR01193 210 QILSYIQIFLLNVLGQRLSIDIILSYIKHLFELP-MSFFSTRRTGEIVSRFT-DASSIIDALASTIL-SLFLDMWILVIV 286 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-HHHhCCCchhHHHHHhh-hHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3444444444455555666667778899999974 599953 34 4554 55666666655443 455666666777
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHH
Q psy845 243 FLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDE 322 (677)
Q Consensus 243 ~v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~ 322 (677)
++++++++|++++++++.++++.++...+.+..++..+...+..++.++.+.|+++|+++||+++.|+++.+++++..++
T Consensus 287 ~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~ 366 (708)
T TIGR01193 287 GLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGD 366 (708)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHH
Confidence 77788999999988888888888888888888888777777778889999999999999999999999999999988887
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 323 NSTTLFLCSMAMRWLAV---RIDVLAVIAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAV 399 (677)
Q Consensus 323 ~~~~~~~~~~~~~~~~~---~l~~l~~l~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~ 399 (677)
..+...+.......... .+..+.. +.++++|.+++.+|.+|+|.+.++.++...+.+|+..+...+.+++.+..+.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~ 445 (708)
T TIGR01193 367 YLNKSFKYQKADQGQQAIKAVTKLILN-VVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVAN 445 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76655544333222222 2222222 3455677788899999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHH
Q psy845 400 ERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSS 479 (677)
Q Consensus 400 eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKST 479 (677)
+|+.++++ .++|.+.+.+ ....++..++|+++||+|+|+++ +++|+|+||+|+|||++||||||||||||
T Consensus 446 ~ri~~~l~-~~~e~~~~~~--------~~~~~~~~~~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKST 515 (708)
T TIGR01193 446 NRLNEVYL-VDSEFINKKK--------RTELNNLNGDIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKST 515 (708)
T ss_pred HHHHHHHc-CCCccccccc--------ccCCCCCCCcEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHH
Confidence 99999984 3333221110 00111235789999999999754 56999999999999999999999999999
Q ss_pred HHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 480 LLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 480 Li~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
|+++|+|+|+|++|+|++||+|++++
T Consensus 516 LlklL~gl~~p~~G~I~idg~~i~~~------------------------------------------------------ 541 (708)
T TIGR01193 516 LAKLLVGFFQARSGEILLNGFSLKDI------------------------------------------------------ 541 (708)
T ss_pred HHHHHhccCCCCCcEEEECCEEHHHc------------------------------------------------------
Confidence 99999999999999999999999998
Q ss_pred hhhhhHHHHhhhcccccccccccccchhhccccC--CCCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHH
Q psy845 560 IASVELETLRSRLSVIPQDPVLFNGTIRYNLDPF--GRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEK 635 (677)
Q Consensus 560 ~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~--~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQR 635 (677)
+.+++|++|+||||||+||+|||+|||+++ .+++|||+++|++.++++++++++|+||||.+ +|.+||||||
T Consensus 542 ----~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQr 617 (708)
T TIGR01193 542 ----DRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQK 617 (708)
T ss_pred ----CHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHH
Confidence 899999999999999999999999999987 36899999999999999999999999999999 7999999999
Q ss_pred HHHHHHHHHhccchhh----------------------cccccc-e-----ecccccccEEEEEeCCeeC
Q psy845 636 QLLCLARALLRKTKKK----------------------KKSGVN-I-----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 636 QRIaIARALLr~p~IL----------------------~~~~~T-I-----LsTI~~aDrIlVLd~GrIV 677 (677)
|||+||||+++||+++ ..+++| | +++++.||||+||++|+++
T Consensus 618 QRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~ 687 (708)
T TIGR01193 618 QRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAKQSDKIIVLDHGKII 687 (708)
T ss_pred HHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHHcCCEEEEEECCEEE
Confidence 9999999999999977 134677 2 5688899999999999984
No 15
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=3e-67 Score=608.82 Aligned_cols=445 Identities=17% Similarity=0.220 Sum_probs=357.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc--cch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy845 169 LYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFA--LPL---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAF 243 (677)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~--~~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~ 243 (677)
+.+.+.........+++..++...+|.|++.. +..||+ .++ .+++.+ +.+++.+.+ .+..++.++..+++.+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l-~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~-~~~~~~~~~~~~~~~~ 285 (710)
T TIGR03796 209 VLTWLQLYYLRRLQIKLAVGMSARFLWHILRL-PVRFFAQRHAGDIASRVQLN-DQVAEFLSG-QLATTALDAVMLVFYA 285 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHcCCcccHHHHHhhhH-HHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 34444444444455556666677999999997 458994 344 455554 456665543 4455777888888888
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHH
Q psy845 244 LMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDEN 323 (677)
Q Consensus 244 v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~ 323 (677)
+++++++|+++++.++.+++..++...+.+..++..+...+..++.++.+.|+++|+++||+++.|+.+.++|++..++.
T Consensus 286 ~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~ 365 (710)
T TIGR03796 286 LLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKL 365 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHH
Confidence 88999999999988888888888888888777776666667778899999999999999999999999999999888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 324 STTLFLCSMAMRWLAVRIDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVER 401 (677)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eR 401 (677)
.+...+......+.......+..+ +.++++|.+++.+|.+|+|.+.++.++...+.+|+..+...+.+++.+..+.+|
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~r 445 (710)
T TIGR03796 366 LNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNR 445 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665554444433333333333222 334566777889999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHH
Q psy845 402 INNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLL 481 (677)
Q Consensus 402 I~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi 481 (677)
+.++++ .++|.......+.+ .......+..+.|+++||+|+|+++++++|+|+||+|+|||++|||||||||||||+
T Consensus 446 i~~il~-~~~e~~~~~~~~~~--~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl 522 (710)
T TIGR03796 446 LDDVLR-NPVDPLLEEEEAPA--AGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIA 522 (710)
T ss_pred HHHHHc-CCCccccccccccc--cccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHH
Confidence 999984 33332211100000 000000123578999999999987656799999999999999999999999999999
Q ss_pred HHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchh
Q psy845 482 VALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA 561 (677)
Q Consensus 482 ~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ 561 (677)
++|+|+|+|++|+|.+||+|++++
T Consensus 523 klL~gl~~p~~G~I~idg~~i~~~-------------------------------------------------------- 546 (710)
T TIGR03796 523 KLVAGLYQPWSGEILFDGIPREEI-------------------------------------------------------- 546 (710)
T ss_pred HHHhcCCCCCCcEEEECCEeHHHC--------------------------------------------------------
Confidence 999999999999999999999998
Q ss_pred hhhHHHHhhhcccccccccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHH
Q psy845 562 SVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLL 638 (677)
Q Consensus 562 ~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRI 638 (677)
+.+++|++|+||||||++|+|||||||++++ +++|+++++|++.+++++++.++|+|+||.+ +|.+|||||||||
T Consensus 547 --~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRi 624 (710)
T TIGR03796 547 --PREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRL 624 (710)
T ss_pred --CHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHH
Confidence 8899999999999999999999999999865 6899999999999999999999999999999 8999999999999
Q ss_pred HHHHHHhccchhh---------------------cccccc-e-----ecccccccEEEEEeCCeeC
Q psy845 639 CLARALLRKTKKK---------------------KKSGVN-I-----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 639 aIARALLr~p~IL---------------------~~~~~T-I-----LsTI~~aDrIlVLd~GrIV 677 (677)
+||||++++|+++ ...++| | ++++++||||+|||+|+++
T Consensus 625 aLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~~D~Iivl~~G~i~ 690 (710)
T TIGR03796 625 EIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRDCDEIIVLERGKVV 690 (710)
T ss_pred HHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeCCEEE
Confidence 9999999999977 124677 2 6688999999999999985
No 16
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=4.5e-67 Score=606.11 Aligned_cols=438 Identities=22% Similarity=0.271 Sum_probs=353.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc-cchhHHh--hhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q psy845 171 HLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFA-LPLLIIT--TLYHLISKVFRSVYLRSVFQNMWSMLFAFLMIC 247 (677)
Q Consensus 171 ~~~~~~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~-~~~~~~t--~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~ 247 (677)
+.+..-......+++.+++...+|+|++.+. ..|.. .++..++ ++.+.+++.+.+.. ...+.++..+++.+++++
T Consensus 204 ~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~-~~~~~~~~G~~~~r~~d~~~i~~~~~~~~-~~~~~~~~~~~~~~~~l~ 281 (694)
T TIGR03375 204 KTLRSYFLDVAGKKADLILSAKLFERVLGLR-MEARPASVGSFANQLREFESVRDFFTSAT-LTALIDLPFALLFLLVIA 281 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cccCCCChhHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHH
Confidence 3333333344445555566669999999985 47753 3443333 34555666554433 345566666667777888
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q psy845 248 FVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTL 327 (677)
Q Consensus 248 ~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~ 327 (677)
+++|+++++.+..++++..+...+.++.++..+...+..++..+.+.|+++|+++||+++.|+.+.+++++..++..+..
T Consensus 282 ~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 361 (694)
T TIGR03375 282 IIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSG 361 (694)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888888888888877777777777889999999999999999999999999999999988877666
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy845 328 FLCSMAMRWLAVRIDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNC 405 (677)
Q Consensus 328 ~~~~~~~~~~~~~l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~ei 405 (677)
.+..............+..+ +.++++|.+++.+|.+|+|.+.++.++...+.+|+..+...+.+++.+..+.+|+.++
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~i 441 (694)
T TIGR03375 362 LKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDEL 441 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544443333333333221 3345667778899999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHh
Q psy845 406 SKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALF 485 (677)
Q Consensus 406 l~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~ 485 (677)
++ .++|.+.+.. .....+..+.|+|+||+|+|+++++++|+|+||+|+|||++|||||||||||||+++|+
T Consensus 442 l~-~~~e~~~~~~--------~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~ 512 (694)
T TIGR03375 442 MQ-LPVERPEGTR--------FLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLL 512 (694)
T ss_pred Hc-CCCCCCCCCC--------CCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 94 3333211100 00111235689999999999866567999999999999999999999999999999999
Q ss_pred cCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhH
Q psy845 486 RLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL 565 (677)
Q Consensus 486 r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~ 565 (677)
|+|+|++|+|.+||+|++++ +.
T Consensus 513 gl~~p~~G~I~idg~~l~~~----------------------------------------------------------~~ 534 (694)
T TIGR03375 513 GLYQPTEGSVLLDGVDIRQI----------------------------------------------------------DP 534 (694)
T ss_pred cCCCCCCceEEECCEEhhhC----------------------------------------------------------CH
Confidence 99999999999999999998 88
Q ss_pred HHHhhhcccccccccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHH
Q psy845 566 ETLRSRLSVIPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLAR 642 (677)
Q Consensus 566 ~~LR~~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIAR 642 (677)
+++|++++|||||+++|+|||+|||++++ ++++||+++|++.++++++++++|+|+||.+ +|.+||||||||++|||
T Consensus 535 ~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalAR 614 (694)
T TIGR03375 535 ADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALAR 614 (694)
T ss_pred HHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999875 5899999999999999999999999999999 89999999999999999
Q ss_pred HHhccchhh-----------------------cccccc-e-----ecccccccEEEEEeCCeeC
Q psy845 643 ALLRKTKKK-----------------------KKSGVN-I-----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 643 ALLr~p~IL-----------------------~~~~~T-I-----LsTI~~aDrIlVLd~GrIV 677 (677)
|+++||+++ ..+++| | +++++.||||+||++|+++
T Consensus 615 all~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~ 678 (694)
T TIGR03375 615 ALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIV 678 (694)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEE
Confidence 999999977 124677 2 6788999999999999985
No 17
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=4e-66 Score=585.88 Aligned_cols=437 Identities=20% Similarity=0.261 Sum_probs=355.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc--cch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy845 170 YHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFA--LPL---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFL 244 (677)
Q Consensus 170 ~~~~~~~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~--~~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v 244 (677)
.+.+.........+++...+..++|.|++... ..+|+ .++ .++++|.+.+.+.+. ..+..++.+++.++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~-~~~~~~~~~g~~~~~~~~d~~~i~~~~~-~~~~~~~~~~~~~~~~~~ 158 (582)
T PRK11176 81 TSFISSYCISWVSGKVVMTMRRRLFGHMMGMP-VSFFDKQSTGTLLSRITYDSEQVASSSS-GALITVVREGASIIGLFI 158 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-HHHhCCCCccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 33333333344555556667779999999874 47884 344 555666666666443 345668888999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHH
Q psy845 245 MICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENS 324 (677)
Q Consensus 245 ~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~ 324 (677)
++++++|++++++++..++..++...+.++.++..+......++..+.+.|.++|++++|+++.|+.+.++|++..++..
T Consensus 159 ~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~ 238 (582)
T PRK11176 159 MMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMR 238 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHH
Confidence 99999999988887777777777777777777777666777788999999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 325 TTLFLCSMAMRWLAVRIDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERI 402 (677)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI 402 (677)
+...+......+.......+..+ ..++++|.+.+.+|.+++|.++++.++...+..|++.+...+..++.+..+.+|+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri 318 (582)
T PRK11176 239 QQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTL 318 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76655554444444434443332 2334455667888999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHH
Q psy845 403 NNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLV 482 (677)
Q Consensus 403 ~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~ 482 (677)
.++++ .+++.+... . ...+..++|+++||+|+|+++++++|+|+|++|++||++|||||||||||||++
T Consensus 319 ~~~~~-~~~~~~~~~---------~-~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ 387 (582)
T PRK11176 319 FAILD-LEQEKDEGK---------R-VIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIAN 387 (582)
T ss_pred HHHhc-CCCcCCCCC---------c-CCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHH
Confidence 99984 332211110 0 011234579999999999876567999999999999999999999999999999
Q ss_pred HHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhh
Q psy845 483 ALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 562 (677)
Q Consensus 483 LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~ 562 (677)
+|+|+|+|++|+|++||+|++++
T Consensus 388 ll~gl~~p~~G~I~i~g~~i~~~--------------------------------------------------------- 410 (582)
T PRK11176 388 LLTRFYDIDEGEILLDGHDLRDY--------------------------------------------------------- 410 (582)
T ss_pred HHHhccCCCCceEEECCEEhhhc---------------------------------------------------------
Confidence 99999999999999999999998
Q ss_pred hhHHHHhhhcccccccccccccchhhccccCC--CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHH
Q psy845 563 VELETLRSRLSVIPQDPVLFNGTIRYNLDPFG--RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLL 638 (677)
Q Consensus 563 ~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~--~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRI 638 (677)
+.+++|++++|||||+++|+|||+|||+++. +++|+|++++++.+|++++++++|+|+||.+ +|.+|||||||||
T Consensus 411 -~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi 489 (582)
T PRK11176 411 -TLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRI 489 (582)
T ss_pred -CHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHH
Confidence 8889999999999999999999999999763 4799999999999999999999999999999 7999999999999
Q ss_pred HHHHHHhccchhh-----------------------cccccc-e-----ecccccccEEEEEeCCeeC
Q psy845 639 CLARALLRKTKKK-----------------------KKSGVN-I-----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 639 aIARALLr~p~IL-----------------------~~~~~T-I-----LsTI~~aDrIlVLd~GrIV 677 (677)
+||||++|+|+++ ..+++| | +++++.||||++|++|+++
T Consensus 490 ~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~ 557 (582)
T PRK11176 490 AIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIV 557 (582)
T ss_pred HHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEE
Confidence 9999999999977 124677 2 5678899999999999984
No 18
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.3e-65 Score=583.67 Aligned_cols=425 Identities=20% Similarity=0.272 Sum_probs=339.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccc--ch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy845 179 SVYLRSVFQNMWSMLFAFLMICFVFPWFAL--PL---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWF 253 (677)
Q Consensus 179 ~~~~~~~~q~~~~~~f~~~~~~~~~~~f~~--~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~l 253 (677)
.....++.+++...+|.+++.. +..||+. ++ .++++|.+.+++.+.. .+..++.++..+++.++++++++|++
T Consensus 90 ~~~~~~~~~~lr~~l~~~l~~~-~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l 167 (592)
T PRK10790 90 NRAAVGVVQQLRTDVMDAALRQ-PLSAFDTQPVGQLISRVTNDTEVIRDLYVT-VVATVLRSAALIGAMLVAMFSLDWRM 167 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-CHHHhCCCChhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444466777999999987 4488853 33 6667777777776654 44557788888888888888999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 254 ALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMA 333 (677)
Q Consensus 254 al~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 333 (677)
+++.+...++..++...+.+..++..+......++.++++.|.++|+++||+|+.|+++.+++.+..++..+........
T Consensus 168 ~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (592)
T PRK10790 168 ALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRL 247 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87776666666666666666666666655566678899999999999999999999999999998877766554433322
Q ss_pred HHHH-HHHHHHHHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy845 334 MRWL-AVRIDVLAVIA--MAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLV 410 (677)
Q Consensus 334 ~~~~-~~~l~~l~~l~--~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~~ 410 (677)
.... ......+..+. .+.+.++ .+..|.+++|.+.++..+...+..|+..+...+.+++++..+.+|+.++++. +
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~-~ 325 (592)
T PRK10790 248 DGFLLRPLLSLFSALILCGLLMLFG-FSASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDG-P 325 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C
Confidence 2111 11122222211 1111222 2578999999999999999999999999999999999999999999999843 2
Q ss_pred CCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC
Q psy845 411 PEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL 490 (677)
Q Consensus 411 ~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p 490 (677)
+++... . ...+..++|+++||+|+|+++ +++|+|+||++++||++||||+||||||||+++|+|+|+|
T Consensus 326 ~~~~~~-~----------~~~~~~~~i~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p 393 (592)
T PRK10790 326 RQQYGN-D----------DRPLQSGRIDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL 393 (592)
T ss_pred CccCCC-C----------ccCCCCCeEEEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 221111 0 011234679999999999864 4699999999999999999999999999999999999999
Q ss_pred CccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhh
Q psy845 491 SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS 570 (677)
Q Consensus 491 ~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~ 570 (677)
++|+|.+||+|++++ +.+++|+
T Consensus 394 ~~G~I~idg~~i~~~----------------------------------------------------------~~~~l~~ 415 (592)
T PRK10790 394 TEGEIRLDGRPLSSL----------------------------------------------------------SHSVLRQ 415 (592)
T ss_pred CCceEEECCEEhhhC----------------------------------------------------------CHHHHHh
Confidence 999999999999998 8999999
Q ss_pred hcccccccccccccchhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccc
Q psy845 571 RLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKT 648 (677)
Q Consensus 571 ~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p 648 (677)
+|+||||||.+|+|||+|||+++++++|+|+++|++++|++++++++|+|+||.+ +|.+|||||||||+||||+++||
T Consensus 416 ~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~ 495 (592)
T PRK10790 416 GVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTP 495 (592)
T ss_pred heEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999888899999999999999999999999999999 89999999999999999999999
Q ss_pred hhh-----------------------cccccc-e-----ecccccccEEEEEeCCeeC
Q psy845 649 KKK-----------------------KKSGVN-I-----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 649 ~IL-----------------------~~~~~T-I-----LsTI~~aDrIlVLd~GrIV 677 (677)
+++ ..+++| | +++++.||+|++||+|+++
T Consensus 496 ~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~ 553 (592)
T PRK10790 496 QILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAV 553 (592)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEE
Confidence 977 124567 2 5678889999999999984
No 19
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=2.3e-65 Score=573.93 Aligned_cols=418 Identities=20% Similarity=0.180 Sum_probs=330.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc--cch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy845 171 HLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFA--LPL---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLM 245 (677)
Q Consensus 171 ~~~~~~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~--~~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~ 245 (677)
+.+.+.......+++.+++..++|+|+..... .||+ .++ .++|.|.+.+++.+. ..+..++.+++.+++.+++
T Consensus 70 ~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~-~~~~~~~~g~~~~~l~~d~~~i~~~~~-~~~~~~~~~~~~~~~~~~~ 147 (529)
T TIGR02868 70 RYLERLVGHDAALRSLGRLRVRVYDRLARLAL-AGRRRFQTGDLLGRLGADVDALQDLYV-RVIVPLVVALVVGSAAVAA 147 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc-cccccCChhhHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 33333344445556667777899999998754 8994 233 666777777777554 3456678888888888888
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHH
Q psy845 246 ICFVFPWFALPLLIITTLYHLIS-KVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENS 324 (677)
Q Consensus 246 l~~~~~~lal~~l~i~~l~~~i~-~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~ 324 (677)
+++++|++++++++..+++.++. ....+..++..+..++..+++.+.+.|.++|+++||+|+.|+.+.+++++..++..
T Consensus 148 l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~ 227 (529)
T TIGR02868 148 IALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELL 227 (529)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 99999999887776666655443 44444445555555566688999999999999999999999999999999888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 325 TTLFLCSMAMRWLAVRIDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERI 402 (677)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI 402 (677)
+...+..............+..+ +.++++|.+.+.+|.+++|.+.+++.+...+..|+..+.+....++.+..+.+|+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri 307 (529)
T TIGR02868 228 AAERRAARATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERI 307 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555444333333333333322 2334556677889999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHH
Q psy845 403 NNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLV 482 (677)
Q Consensus 403 ~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~ 482 (677)
.++++. +++.+.+... ......+..++|+|+||+|+|++++ ++|+|+||+|+|||++|||||||||||||++
T Consensus 308 ~~~l~~-~~~~~~~~~~------~~~~~~~~~~~I~~~~vsf~Y~~~~-~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~ 379 (529)
T TIGR02868 308 EEVTGA-KGPRPEGVVP------AAGALGLGKPTLELRDLSFGYPGSP-PVLDGVSLDLPPGERVAILGPSGSGKSTLLM 379 (529)
T ss_pred HHHhcC-CCCcCCCCCC------CCcccCCCCceEEEEEEEEecCCCC-ceeecceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 999843 3322111100 0001112346799999999998653 5999999999999999999999999999999
Q ss_pred HHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhh
Q psy845 483 ALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 562 (677)
Q Consensus 483 LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~ 562 (677)
+|+|+|+|++|+|.+||+|++++
T Consensus 380 lL~g~~~p~~G~I~i~g~~i~~~--------------------------------------------------------- 402 (529)
T TIGR02868 380 LLTGLLDPLQGEVTLDGVSVSSL--------------------------------------------------------- 402 (529)
T ss_pred HHhcCCCCCCcEEEECCEEhhhH---------------------------------------------------------
Confidence 99999999999999999998764
Q ss_pred hhHHHHhhhcccccccccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHH
Q psy845 563 VELETLRSRLSVIPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLC 639 (677)
Q Consensus 563 ~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIa 639 (677)
.+++|++++||||||+||+|||||||+++. +++|||+++|++.++++++++++|+||||.+ +|.+||||||||||
T Consensus 403 --~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRia 480 (529)
T TIGR02868 403 --QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLA 480 (529)
T ss_pred --HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHH
Confidence 467899999999999999999999999864 6899999999999999999999999999999 79999999999999
Q ss_pred HHHHHhccchhhcccccc
Q psy845 640 LARALLRKTKKKKKSGVN 657 (677)
Q Consensus 640 IARALLr~p~IL~~~~~T 657 (677)
||||+++||+++.+++-|
T Consensus 481 iARall~~~~iliLDE~T 498 (529)
T TIGR02868 481 LARALLADAPILLLDEPT 498 (529)
T ss_pred HHHHHhcCCCEEEEeCCc
Confidence 999999999999655544
No 20
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2e-65 Score=630.22 Aligned_cols=488 Identities=19% Similarity=0.199 Sum_probs=349.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhcccccccc----ch---hHHhhhHHHHHHHhhhhHHHHHHHHHHH
Q psy845 170 YHLISKVFRSVYLRSVFQNM----WSMLFAFLMICFVFPWFAL----PL---LIITTLYHLISKVFRSVYLRSVFQNMWS 238 (677)
Q Consensus 170 ~~~~~~~~~~~~~~~~~q~~----~~~~f~~~~~~~~~~~f~~----~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ 238 (677)
..+++...+.|+...++|++ ..++|+|++.. ++.|||. |+ .++++|.+.+++.+.. .+..++..++.
T Consensus 878 ~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~-~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~-~l~~~~~~i~~ 955 (1466)
T PTZ00265 878 AMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQ-EISFFDQDKHAPGLLSAHINRDVHLLKTGLVN-NIVIFTHFIVL 955 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 33444455555555555554 45899998885 6699964 34 5666777777776654 46678899999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH-------------HHHhcccHHHHHHHHHchH
Q psy845 239 MLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRE-----LKRM-------------ENVSRSPIFSNVSSTVSGL 300 (677)
Q Consensus 239 ll~~~v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~-----~~r~-------------~~~~~s~l~s~~~E~l~Gi 300 (677)
++++++++++++|+++++++++.++. .+.+.++.+. ..+. .++..++..+.++|+++|+
T Consensus 956 ~i~~~~~~~~~~~~l~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi 1032 (1466)
T PTZ00265 956 FLVSMVMSFYFCPIVAAVLTGTYFIF---MRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNM 1032 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcH
Confidence 99999899999998877665444333 2222222221 1111 1122355688999999999
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q psy845 301 HIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAV--IAMAIITGLTVAFHGSVSPALAGLALTYASHV 378 (677)
Q Consensus 301 ~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--l~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l 378 (677)
++||+|+.|+++.++|++..+...+...+..............+.. .+.++++|.+++.+|.+++|.+..++.+....
T Consensus 1033 ~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~ 1112 (1466)
T PTZ00265 1033 NTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFT 1112 (1466)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999887766554433332222222222222 14456677788999999999988877665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCC-CCccccce
Q psy845 379 TGLLQFTVRVFVETELNFLAVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDN-WPLVLANV 457 (677)
Q Consensus 379 ~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~-~~~VLknI 457 (677)
..++..+...+.+++++.+|.+|+.++++. +++.+...... .......+..|+|+|+||+|+|+++ +.+||+|+
T Consensus 1113 ~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~-~~~~~~~~~~~----~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~l 1187 (1466)
T PTZ00265 1113 GSYAGKLMSLKGDSENAKLSFEKYYPLIIR-KSNIDVRDNGG----IRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDL 1187 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCcCCCCCCcc----cccccCCCCCceEEEEEEEEECCCCCCCccccCe
Confidence 566778888899999999999999999943 33211111000 0000011235789999999999854 34799999
Q ss_pred eeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccc----cHH-HhhhhcccccCCccccccccccCC
Q psy845 458 SFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV----ELE-TLRSRLSVIPQDPVLFNGIVGRTG 532 (677)
Q Consensus 458 Sl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l----~~~-~~~~~i~~v~q~~~lf~~~~~~n~ 532 (677)
||+|+|||++|||||||||||||++||+|+|+|+.|.+...+.+...- +.. ..-.++ ..+-..--|+...+. +
T Consensus 1188 sl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~ 1265 (1466)
T PTZ00265 1188 TFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQN-VGMKNVNEFSLTKEG-G 1265 (1466)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccc-ccccccccccccccc-c
Confidence 999999999999999999999999999999999877776644332220 000 000000 000000011111111 1
Q ss_pred CCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC-CCChHHHHHHHHHccch
Q psy845 533 AGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLK 611 (677)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~ 611 (677)
+++.+- ..|++|+|++||.|+++.+.+++|++||||||||+||+|||||||+++. +++|||+++|++.|+++
T Consensus 1266 ~~~~~~-------~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~ 1338 (1466)
T PTZ00265 1266 SGEDST-------VFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAID 1338 (1466)
T ss_pred cccccc-------cCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCH
Confidence 111111 3478999999999999999999999999999999999999999999874 68999999999999999
Q ss_pred hhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh----------------------cc---cccc-e-----
Q psy845 612 SKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK----------------------KK---SGVN-I----- 658 (677)
Q Consensus 612 efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL----------------------~~---~~~T-I----- 658 (677)
+||++||+||||.+ +|.+|||||||||||||||+|||+++ .. +++| |
T Consensus 1339 ~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHR 1418 (1466)
T PTZ00265 1339 EFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHR 1418 (1466)
T ss_pred HHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEech
Confidence 99999999999999 89999999999999999999999987 12 4788 2
Q ss_pred ecccccccEEEEEeC----Cee
Q psy845 659 TRPVTSCDKVLVMDN----GQA 676 (677)
Q Consensus 659 LsTI~~aDrIlVLd~----GrI 676 (677)
++++++||+|+||++ |++
T Consensus 1419 lsti~~aD~Ivvl~~~~~~G~i 1440 (1466)
T PTZ00265 1419 IASIKRSDKIVVFNNPDRTGSF 1440 (1466)
T ss_pred HHHHHhCCEEEEEeCCCCCCCE
Confidence 788999999999999 884
No 21
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=9.7e-65 Score=572.55 Aligned_cols=438 Identities=22% Similarity=0.281 Sum_probs=359.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhcccccccc--ch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHH
Q psy845 169 LYHLISKVFRSVYLRSVFQN----MWSMLFAFLMICFVFPWFAL--PL---LIITTLYHLISKVFRSVYLRSVFQNMWSM 239 (677)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~q~----~~~~~f~~~~~~~~~~~f~~--~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~l 239 (677)
+.+.+....++++..+..++ +...+|.|++... ..+|+. ++ .+++.|.+.+++.+. ..+..++.+++.+
T Consensus 65 i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~~~-~~~~~~~~~g~~~~~l~~di~~i~~~~~-~~~~~~i~~~~~~ 142 (571)
T TIGR02203 65 VLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLP-VSFFDRQPTGTLLSRITFDSEQVASAAT-DAFIVLVRETLTV 142 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-HHHhCCCCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 33444444445555554444 5558899988864 478853 33 566666666766553 4556688889999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHH
Q psy845 240 LFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQ 319 (677)
Q Consensus 240 l~~~v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~ 319 (677)
++.++++++++|++++++++..++..++...+.++.++..+...+..++..+.+.|.++|+++||+++.|+++.+++++.
T Consensus 143 ~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~ 222 (571)
T TIGR02203 143 IGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAV 222 (571)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHH
Confidence 99999999999999998888888888888888888888777777888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 320 YDENSTTLFLCSMAMRWLAVRIDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFL 397 (677)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~ 397 (677)
.++..+...+......+.......+..+ +.++++|.+.+.+|.+++|.+.++..++..+..|+..+......++++..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~ 302 (571)
T TIGR02203 223 SNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLA 302 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888776655554444444333333322 33455666788899999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCCh
Q psy845 398 AVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGK 477 (677)
Q Consensus 398 s~eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGK 477 (677)
+.+|+.++++. +++.+.... . . .+..++|+++||+|+|+++++++|+|+||++++||++||+|||||||
T Consensus 303 ~~~ri~~~l~~-~~~~~~~~~--------~-~-~~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGK 371 (571)
T TIGR02203 303 AAESLFTLLDS-PPEKDTGTR--------A-I-ERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGK 371 (571)
T ss_pred HHHHHHHHHcC-CCCCCCCCC--------C-C-CCCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCH
Confidence 99999999843 322211100 0 0 12346799999999998755679999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccc
Q psy845 478 SSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 557 (677)
Q Consensus 478 STLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~ 557 (677)
|||+++|+|+|+|++|+|++||+|++++
T Consensus 372 STLl~lL~gl~~~~~G~I~i~g~~i~~~---------------------------------------------------- 399 (571)
T TIGR02203 372 STLVNLIPRFYEPDSGQILLDGHDLADY---------------------------------------------------- 399 (571)
T ss_pred HHHHHHHHhccCCCCCeEEECCEeHHhc----------------------------------------------------
Confidence 9999999999999999999999999988
Q ss_pred cchhhhhHHHHhhhcccccccccccccchhhccccCC--CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChH
Q psy845 558 FDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG--RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLG 633 (677)
Q Consensus 558 ~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~--~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGG 633 (677)
+.+++|++++||||||++|+|||+|||+++. +.+|+|++++++.+|+++++.++|+|+||.+ +|.+||||
T Consensus 400 ------~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 473 (571)
T TIGR02203 400 ------TLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGG 473 (571)
T ss_pred ------CHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHH
Confidence 8889999999999999999999999999874 6899999999999999999999999999999 78999999
Q ss_pred HHHHHHHHHHHhccchhh-----------------------cccccc-e-----ecccccccEEEEEeCCeeC
Q psy845 634 EKQLLCLARALLRKTKKK-----------------------KKSGVN-I-----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 634 QRQRIaIARALLr~p~IL-----------------------~~~~~T-I-----LsTI~~aDrIlVLd~GrIV 677 (677)
|||||+||||++++|+++ ..+++| | .+.++.||+|++|++|+++
T Consensus 474 qrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~ 546 (571)
T TIGR02203 474 QRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIV 546 (571)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEE
Confidence 999999999999999987 124677 2 3456789999999999974
No 22
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.8e-64 Score=573.64 Aligned_cols=436 Identities=21% Similarity=0.220 Sum_probs=345.9
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhcccccccc--ch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHH
Q psy845 170 YHLISKVFRSVYLR----SVFQNMWSMLFAFLMICFVFPWFAL--PL---LIITTLYHLISKVFRSVYLRSVFQNMWSML 240 (677)
Q Consensus 170 ~~~~~~~~~~~~~~----~~~q~~~~~~f~~~~~~~~~~~f~~--~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll 240 (677)
.+.+....+.+... ++.+++...+|+|++... .+||+. ++ .++|.|.+.+++.+ ...++.++.+++.++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~-~~~~~~~~~g~~~srl~~Dv~~l~~~~-~~~~~~~~~~~~~~~ 149 (574)
T PRK11160 72 GRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLS-PAGLARYRQGDLLNRLVADVDTLDHLY-LRLISPLVAALVVIL 149 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-hHhhccCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 34444444444444 444556669999999874 488853 33 66677777777755 345677888888899
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHH
Q psy845 241 FAFLMICFVFPWFALPLLIITTLYH-LISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQ 319 (677)
Q Consensus 241 ~~~v~l~~~~~~lal~~l~i~~l~~-~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~ 319 (677)
+.++++++++|++++++++..++.. ++...+.+..++..+..++..+++++.+.|.++|+++||+|+.|+++.+++++.
T Consensus 150 ~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~ 229 (574)
T PRK11160 150 VLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQT 229 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHH
Confidence 9999999999999887765555443 345666666666666677778899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q psy845 320 YDENSTTLFLCSMAMRWLAVRIDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASH-VTGLLQFTVRVFVETELNF 396 (677)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~-l~~~l~~l~~~~~~l~~~~ 396 (677)
.++..+...+......+.......+..+ +.++++|.+. .+|.++.|.+.+++.|... ..+++..+...+..++++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~ 308 (574)
T PRK11160 230 EQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVI 308 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888776655554444443333333332 2233445555 4788999988887777544 4568888888889999999
Q ss_pred HHHHHHHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCC
Q psy845 397 LAVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAG 476 (677)
Q Consensus 397 ~s~eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSG 476 (677)
+|.+|+.++++ .+++.+.+.. . ...+..+.|+++||+|+|+++++++|+|+||+++|||++|||||||||
T Consensus 309 ~s~~ri~~ll~-~~~~~~~~~~--------~-~~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsG 378 (574)
T PRK11160 309 ASARRINEITE-QKPEVTFPTT--------S-TAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCG 378 (574)
T ss_pred HHHHHHHHHHh-CCCCCCCCcc--------c-CCCCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCC
Confidence 99999999984 3333211100 0 011234679999999999865457999999999999999999999999
Q ss_pred hHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhcccccccc
Q psy845 477 KSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKID 556 (677)
Q Consensus 477 KSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~ 556 (677)
||||+++|+|+|+|++|+|.+||+|++++
T Consensus 379 KSTL~~ll~g~~~p~~G~I~i~g~~i~~~--------------------------------------------------- 407 (574)
T PRK11160 379 KSTLLQLLTRAWDPQQGEILLNGQPIADY--------------------------------------------------- 407 (574)
T ss_pred HHHHHHHHhcCCCCCCceEEECCEEhhhC---------------------------------------------------
Confidence 99999999999999999999999999998
Q ss_pred ccchhhhhHHHHhhhcccccccccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChH
Q psy845 557 DFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLG 633 (677)
Q Consensus 557 ~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGG 633 (677)
+.+++|++++||||||++|++||+|||+++. +++|+|+++|++.+++++++++ |+||||.+ +|.+||||
T Consensus 408 -------~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgG 479 (574)
T PRK11160 408 -------SEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGG 479 (574)
T ss_pred -------CHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHH
Confidence 8899999999999999999999999998864 5899999999999999999999 99999999 89999999
Q ss_pred HHHHHHHHHHHhccchhh-----------------------cccccc-e-----ecccccccEEEEEeCCeeC
Q psy845 634 EKQLLCLARALLRKTKKK-----------------------KKSGVN-I-----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 634 QRQRIaIARALLr~p~IL-----------------------~~~~~T-I-----LsTI~~aDrIlVLd~GrIV 677 (677)
||||++||||+++||+++ ..+++| | ++++++||||+||++|+++
T Consensus 480 qrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~ 552 (574)
T PRK11160 480 EQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQII 552 (574)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEE
Confidence 999999999999999977 134677 2 6688899999999999984
No 23
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.3e-64 Score=583.83 Aligned_cols=440 Identities=22% Similarity=0.282 Sum_probs=351.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc--chhHHh--hhHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy845 168 TLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFAL--PLLIIT--TLYHLISKVFRSVYLRSVFQNMWSMLFAF 243 (677)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~~--~~~~~t--~~~~~i~~v~~s~~l~~il~~~~~ll~~~ 243 (677)
.+.+.+..-......+++..++...+|.|++.+ +..||+. ++..++ ++.+.+++.+.+..++ .+.++...++.+
T Consensus 193 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l-~~~~f~~~~~g~~~~rl~d~~~i~~~~~~~~~~-~~~~~~~~~~~~ 270 (694)
T TIGR01846 193 PALGGLRTYLFAHLTSRIDVELGARLYRHLLGL-PLGYFESRRVGDTVARVRELEQIRNFLTGSALT-VVLDLLFVVVFL 270 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHcCCCCHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 334444444444455555666666999999997 5599953 443333 3555566655444444 454555555556
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHH
Q psy845 244 LMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDEN 323 (677)
Q Consensus 244 v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~ 323 (677)
+++++++|++++++++..+++..+...+.+..++..+...+..++.++.+.|+++|+++||++|.|+.+.++|++..++.
T Consensus 271 ~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~ 350 (694)
T TIGR01846 271 AVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAY 350 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHH
Confidence 78889999999888877777777777776666665555556667889999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 324 STTLFLCSMAMRWLAVRIDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVER 401 (677)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eR 401 (677)
.+...+......+.......+..+ +..+++|.+++.+|.+|+|.+.++.++...+..|+..+...+.+++.+..+.+|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~r 430 (694)
T TIGR01846 351 VAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALER 430 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766655554444444333333322 334566777889999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHH
Q psy845 402 INNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLL 481 (677)
Q Consensus 402 I~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi 481 (677)
+.++++ .++|.... . .....+..+.|+++||+|+|+++++++|+|+||+++|||++|||||||||||||+
T Consensus 431 i~~~l~-~~~e~~~~-~--------~~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~ 500 (694)
T TIGR01846 431 LGDILN-SPTEPRSA-G--------LAALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLT 500 (694)
T ss_pred HHHHHc-CCCCccCC-C--------CCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHH
Confidence 999984 33332111 0 0001123568999999999986656799999999999999999999999999999
Q ss_pred HHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchh
Q psy845 482 VALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA 561 (677)
Q Consensus 482 ~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ 561 (677)
++|+|+|+|++|+|++||+|++++
T Consensus 501 ~ll~g~~~p~~G~I~idg~~i~~~-------------------------------------------------------- 524 (694)
T TIGR01846 501 KLLQRLYTPQHGQVLVDGVDLAIA-------------------------------------------------------- 524 (694)
T ss_pred HHHhcCCCCCCceEEECCEehhhC--------------------------------------------------------
Confidence 999999999999999999999998
Q ss_pred hhhHHHHhhhcccccccccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHH
Q psy845 562 SVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLL 638 (677)
Q Consensus 562 ~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRI 638 (677)
+.+++|++++|||||+++|+|||+|||++++ +++++++++|++.++++++++++|+|+||.+ +|.+||||||||+
T Consensus 525 --~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri 602 (694)
T TIGR01846 525 --DPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRI 602 (694)
T ss_pred --CHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHH
Confidence 8889999999999999999999999999764 6899999999999999999999999999999 7999999999999
Q ss_pred HHHHHHhccchhh-----------------------cccccc-e-----ecccccccEEEEEeCCeeC
Q psy845 639 CLARALLRKTKKK-----------------------KKSGVN-I-----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 639 aIARALLr~p~IL-----------------------~~~~~T-I-----LsTI~~aDrIlVLd~GrIV 677 (677)
+||||++++|+++ ..+++| | +++++.||||+||++|+++
T Consensus 603 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~ 670 (694)
T TIGR01846 603 AIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIA 670 (694)
T ss_pred HHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEE
Confidence 9999999999977 124577 2 5678889999999999984
No 24
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=2.8e-64 Score=565.23 Aligned_cols=434 Identities=20% Similarity=0.235 Sum_probs=345.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc--cch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy845 167 TTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFA--LPL---LIITTLYHLISKVFRSVYLRSVFQNMWSMLF 241 (677)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~--~~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~ 241 (677)
..+.+.+..-......+++.+++...+|.|+... +..||+ .++ .++++|.+.+++.+. ..+..++.+++..++
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~-~~~~~~~~~~g~~~~~l~~di~~i~~~~~-~~~~~~~~~~~~~~~ 134 (529)
T TIGR02857 57 RALLGWLGERAAARAAAAVKSQLRERLLAAVAAL-GPGWLQGRPSGELATLALEGVEALDGYFA-RYLPQLVLAVIIPLA 134 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchhhccCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3344444444555566666677777999999986 558994 333 666677777777554 345667788888888
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHH
Q psy845 242 AFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYD 321 (677)
Q Consensus 242 ~~v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~ 321 (677)
.+++++.++|+++++++...++...+...+.++.++..+..++..++..+.+.|.++|+++||+|+.|+++.++|++..+
T Consensus 135 ~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~ 214 (529)
T TIGR02857 135 ILAAVFPADWISGLILLLTAPLIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSE 214 (529)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHH
Confidence 88888899999888777777766666666666666666666666778999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 322 ENSTTLFLCSMAMRWLAVRIDVLAVIA--MAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAV 399 (677)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~l~~l~--~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~ 399 (677)
+..+...+......+.......+..+. ...+.+++.+.+|.+++|.+.++..++..+..|+..+...+..++.+..+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~ 294 (529)
T TIGR02857 215 EYRERTMRVLRIAFLSSAVLELFATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAA 294 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776655444333333333333322221 122334445568999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHH
Q psy845 400 ERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSS 479 (677)
Q Consensus 400 eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKST 479 (677)
+|+.++++. +++.... . . ...+..++|+++||+|+|+++++++|+|+||+++|||++||||||||||||
T Consensus 295 ~ri~~ll~~-~~~~~~~-~--------~-~~~~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKST 363 (529)
T TIGR02857 295 EALFAVLDA-PRPLAGK-A--------P-VTAAPAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKST 363 (529)
T ss_pred HHHHHHhCC-CcccCCC-c--------C-CCCCCCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHH
Confidence 999999842 2221110 0 0 011123579999999999876557999999999999999999999999999
Q ss_pred HHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 480 LLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 480 Li~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
|+++|+|+|+|++|+|.+||+|++++
T Consensus 364 L~~ll~g~~~~~~G~I~~~g~~i~~~------------------------------------------------------ 389 (529)
T TIGR02857 364 LLNLLLGFVDPTEGSIAVNGVPLADA------------------------------------------------------ 389 (529)
T ss_pred HHHHHhcCCCCCCcEEEECCEehhhC------------------------------------------------------
Confidence 99999999999999999999999998
Q ss_pred hhhhhHHHHhhhcccccccccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHH
Q psy845 560 IASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQ 636 (677)
Q Consensus 560 ~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQ 636 (677)
+.+++|++++||||||++|++||+|||+++. +++|+++++|++.++++++++++|+|+||.+ +|.+|||||||
T Consensus 390 ----~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~q 465 (529)
T TIGR02857 390 ----DADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQ 465 (529)
T ss_pred ----CHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHH
Confidence 8889999999999999999999999999864 5789999999999999999999999999999 79999999999
Q ss_pred HHHHHHHHhccchhh-----------------------cccccc-e-----ecccccccEEEEE
Q psy845 637 LLCLARALLRKTKKK-----------------------KKSGVN-I-----TRPVTSCDKVLVM 671 (677)
Q Consensus 637 RIaIARALLr~p~IL-----------------------~~~~~T-I-----LsTI~~aDrIlVL 671 (677)
|++||||+++||+++ ..+++| | +++++.||||+||
T Consensus 466 ri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 466 RLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999976 125677 2 5678899999986
No 25
>KOG0055|consensus
Probab=100.00 E-value=4.1e-66 Score=607.64 Aligned_cols=424 Identities=21% Similarity=0.248 Sum_probs=350.0
Q ss_pred HHHHHHHHHHHHhhhccccccccc--h---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy845 186 FQNMWSMLFAFLMICFVFPWFALP--L---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLII 260 (677)
Q Consensus 186 ~q~~~~~~f~~~~~~~~~~~f~~~--~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~lal~~l~i 260 (677)
.++|...-++.+++ |++.|||+- + +++++|.+.+++.++. -++.+++.+.++++.+++.++..|+++++++..
T Consensus 103 ~~riR~~yl~~iLr-Qdi~~fD~~~~g~~~~~l~~d~~~I~d~~ge-Kvg~~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~ 180 (1228)
T KOG0055|consen 103 TARIRSKYLKAILR-QDIGWFDTNSTGELVTRLSDDIELIQDAIGE-KVGNFIQLLATFIAGFVIGFYYGWKLTLVMLSF 180 (1228)
T ss_pred HHHHHHHHHHHHHh-CccceeecccccceEEEecCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666676777777 899999864 2 7778888888887765 446799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 261 TTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVR 340 (677)
Q Consensus 261 ~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (677)
.|+..+....+.+...+....++.+.++..+..+|++++++||.+|+.|+++.++|.+..+...+...+...........
T Consensus 181 ~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~~G~~~G~ 260 (1228)
T KOG0055|consen 181 IPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGLFKGLGLGF 260 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99998888888887777777777777888899999999999999999999999999999988776554433322211111
Q ss_pred H--HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCC
Q psy845 341 I--DVLAVIAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLVPEGRGPIT 418 (677)
Q Consensus 341 l--~~l~~l~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~~~e~~~~~~ 418 (677)
. -+....+.++++|..++.++..++|.+...+.....-...+.+....+..+..+.+|+.+|.+.++..++.+... .
T Consensus 261 ~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~-~ 339 (1228)
T KOG0055|consen 261 TFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYS-K 339 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCccc-c
Confidence 1 112223556777777888888888876655544444445566667777888999999999999995433322211 1
Q ss_pred CccccccccccCCCCCccEEEEeeeEEeCCC-CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEE
Q psy845 419 SEFGQVKVKLADWPRQGTIKFKNVSLRYRDN-WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKI 497 (677)
Q Consensus 419 ~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~-~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~I 497 (677)
+ . . .....+|+|+|+||+|+||.+ +.++|+|+||+|++||++|+||||||||||+++||.|||||++|+|++
T Consensus 340 ~-----~-~-~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~i 412 (1228)
T KOG0055|consen 340 G-----G-R-VLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLI 412 (1228)
T ss_pred c-----C-C-cccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEE
Confidence 1 0 0 111257899999999999977 347999999999999999999999999999999999999999999999
Q ss_pred CCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccc
Q psy845 498 DDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQ 577 (677)
Q Consensus 498 dG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Q 577 (677)
||.|++++ +.++||++||+|.|
T Consensus 413 dG~di~~~----------------------------------------------------------~~~~lr~~iglV~Q 434 (1228)
T KOG0055|consen 413 DGEDIRNL----------------------------------------------------------NLKWLRSQIGLVSQ 434 (1228)
T ss_pred cCccchhc----------------------------------------------------------chHHHHhhcCeeee
Confidence 99999999 89999999999999
Q ss_pred cccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh---
Q psy845 578 DPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK--- 651 (677)
Q Consensus 578 d~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL--- 651 (677)
||.||++||+|||+++. +++++|+.+|+|++++++||.+||+||||.+ +|.+|||||||||||||||+|||+||
T Consensus 435 ePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLD 514 (1228)
T KOG0055|consen 435 EPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLD 514 (1228)
T ss_pred chhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEec
Confidence 99999999999999986 7999999999999999999999999999999 89999999999999999999999988
Q ss_pred --------------------cccccc-e-----ecccccccEEEEEeCCeeC
Q psy845 652 --------------------KKSGVN-I-----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------------------~~~~~T-I-----LsTI~~aDrIlVLd~GrIV 677 (677)
..+|+| | +|||++||+|+||++|+||
T Consensus 515 EaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~Iv 566 (1228)
T KOG0055|consen 515 EATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIV 566 (1228)
T ss_pred CcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEE
Confidence 246787 2 8999999999999999986
No 26
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=4.3e-63 Score=562.78 Aligned_cols=426 Identities=21% Similarity=0.305 Sum_probs=342.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccc--ch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy845 182 LRSVFQNMWSMLFAFLMICFVFPWFAL--PL---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALP 256 (677)
Q Consensus 182 ~~~~~q~~~~~~f~~~~~~~~~~~f~~--~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~lal~ 256 (677)
.+.+-+++...+|.|+... +..||+. ++ .++++|.+.+.+.+. ..+..++..++..++.+++++.++|+++++
T Consensus 84 ~~~~~~~l~~~l~~~l~~~-~~~~~~~~~~g~~~~~~~~di~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 161 (588)
T PRK13657 84 AHRRRLAVLTEYFERIIQL-PLAWHSQRGSGRALHTLLRGTDALFGLWL-EFMREHLATLVALVVLLPLALFMNWRLSLV 161 (588)
T ss_pred HHHHHHHHHHHHHHHHHhC-CHHHHCcCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555899999987 4588843 34 555555555554432 344556667777777777888899999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 257 LLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRW 336 (677)
Q Consensus 257 ~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (677)
++++.+++..+.+.+.++.++..+...+..+++.+.+.|.++|++++|.|+.++.+.+++++..++..+...+......+
T Consensus 162 ~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (588)
T PRK13657 162 LVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWAL 241 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887778888888887777777777788999999999999999999999999999998888876655443333323
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy845 337 LAVRIDVLAV--IAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLVPEGR 414 (677)
Q Consensus 337 ~~~~l~~l~~--l~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~~~e~~ 414 (677)
.....+.+.. .+.++++|.+.+.+|.+++|.+.+++.++..+..|+..+...+..+..+..+.+|+.++++. +++.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~-~~~~~ 320 (588)
T PRK13657 242 ASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDA-VPDVR 320 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcccC
Confidence 2222222221 13445667778899999999999999999999999999999999999999999999998843 22211
Q ss_pred CCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccE
Q psy845 415 GPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494 (677)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~ 494 (677)
.... .... .+..+.|+++||+|+|+++ +++|+|+|++++|||++|||||||||||||+++|+|+|+|++|+
T Consensus 321 ~~~~-------~~~~-~~~~~~I~~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~ 391 (588)
T PRK13657 321 DPPG-------AIDL-GRVKGAVEFDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGR 391 (588)
T ss_pred CCCC-------CCCc-CCCCCeEEEEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCE
Confidence 1100 0000 1124579999999999854 46999999999999999999999999999999999999999999
Q ss_pred EEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccc
Q psy845 495 IKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 574 (677)
Q Consensus 495 I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~ 574 (677)
|.+||+|++++ +.+++|++|+|
T Consensus 392 I~i~g~~i~~~----------------------------------------------------------~~~~~r~~i~~ 413 (588)
T PRK13657 392 ILIDGTDIRTV----------------------------------------------------------TRASLRRNIAV 413 (588)
T ss_pred EEECCEEhhhC----------------------------------------------------------CHHHHHhheEE
Confidence 99999999998 88999999999
Q ss_pred ccccccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh
Q psy845 575 IPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 575 V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
|||||++|+|||||||++++ +++|+|++++++.+++++++.++|+|+||.+ +|.+||||||||++||||++++|+++
T Consensus 414 v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~il 493 (588)
T PRK13657 414 VFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPIL 493 (588)
T ss_pred EecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999874 6889999999999999999999999999998 79999999999999999999999977
Q ss_pred -----------------------cccccce------ecccccccEEEEEeCCeeC
Q psy845 652 -----------------------KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----------------------~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
..+++|+ ++.++.||||++|++|+++
T Consensus 494 iLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~ 548 (588)
T PRK13657 494 ILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVV 548 (588)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEE
Confidence 1246772 4567889999999999974
No 27
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.7e-62 Score=555.20 Aligned_cols=433 Identities=24% Similarity=0.320 Sum_probs=347.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccccc--ch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy845 177 FRSVYLRSVFQNMWSMLFAFLMICFVFPWFAL--PL---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFP 251 (677)
Q Consensus 177 ~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~~--~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~ 251 (677)
+.....+++..++...+|+++.... ..||+. ++ .++++|.+.+++.+. ..+..++.+++.+++++++++.++|
T Consensus 81 ~~~~~~~~~~~~lr~~l~~~l~~~~-~~~~~~~~~g~~~~~~~~d~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (576)
T TIGR02204 81 LVTWLGERVVADIRRAVFAHLISLS-PSFFDKNRSGEVVSRLTTDTTLLQSVIG-SSLSMALRNALMCIGGLIMMFITSP 158 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-HHHHccCCccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3344445555556668899988874 478843 43 566666777766443 3456677888888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 252 WFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCS 331 (677)
Q Consensus 252 ~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~ 331 (677)
++++++++..++...+...+.++.++..+...+..++..+.+.|.++|+++||+++.|+.+.+++++..++..+...+..
T Consensus 159 ~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (576)
T TIGR02204 159 KLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRI 238 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 98887777777777777777777777777777777889999999999999999999999999999998887766554443
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy845 332 MAMRWLAVRIDVLAV--IAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKL 409 (677)
Q Consensus 332 ~~~~~~~~~l~~l~~--l~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~ 409 (677)
....+.......+.. .+..+++|.+.+.+|.+++|.+.++..++..+..|+..+...+.+++.+..+.+|+.++++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~- 317 (576)
T TIGR02204 239 RTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQA- 317 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 333333332222221 13344566778889999999999999999999999999999999999999999999999842
Q ss_pred CCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCC-CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 410 VPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNW-PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 410 ~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~-~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+++.+.... ......+..+.|+++||+|+|++++ +++|+|+||+++|||++||+||||||||||+++|+|+|
T Consensus 318 ~~~~~~~~~-------~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~ 390 (576)
T TIGR02204 318 EPDIKAPAH-------PKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFY 390 (576)
T ss_pred CCcCCCCCC-------CccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 222111100 0001112345799999999998643 57999999999999999999999999999999999999
Q ss_pred CCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHH
Q psy845 489 ELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL 568 (677)
Q Consensus 489 ~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~L 568 (677)
+|++|+|.+||+|++++ +.+++
T Consensus 391 ~p~~G~I~i~g~~i~~~----------------------------------------------------------~~~~~ 412 (576)
T TIGR02204 391 DPQSGRILLDGVDLRQL----------------------------------------------------------DPAEL 412 (576)
T ss_pred CCCCCEEEECCEEHHhc----------------------------------------------------------CHHHH
Confidence 99999999999999988 88899
Q ss_pred hhhcccccccccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHh
Q psy845 569 RSRLSVIPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALL 645 (677)
Q Consensus 569 R~~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALL 645 (677)
|++++|+||||++|+|||+|||+++. +.+|++++++++.++++++++++|+|+||.+ +|.+||||||||++||||++
T Consensus 413 ~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~ 492 (576)
T TIGR02204 413 RARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAIL 492 (576)
T ss_pred HHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999764 5789999999999999999999999999999 78999999999999999999
Q ss_pred ccchhh-----------------------cccccc-e-----ecccccccEEEEEeCCeeC
Q psy845 646 RKTKKK-----------------------KKSGVN-I-----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 646 r~p~IL-----------------------~~~~~T-I-----LsTI~~aDrIlVLd~GrIV 677 (677)
++|+++ ..+++| | .+.++.||||++|++|+++
T Consensus 493 ~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~ 553 (576)
T TIGR02204 493 KDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIV 553 (576)
T ss_pred hCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEE
Confidence 999977 124667 2 3456789999999999974
No 28
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=3.8e-62 Score=550.62 Aligned_cols=430 Identities=17% Similarity=0.242 Sum_probs=341.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy845 176 VFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFAL 255 (677)
Q Consensus 176 ~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~~~~~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~lal 255 (677)
-......+++..++..++|+|+..... ..+..-..++++|.+.+++.+....+..++..++.++.. +++++++|++++
T Consensus 68 ~~~~~~~~~~~~~lr~~~~~~ll~~~~-~~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~l~l 145 (544)
T TIGR01842 68 FVLVRIGEKLDGALNQPIFAASFSATL-RRGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYL-LVCFLLHPWIGI 145 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcc-cCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHhhHHHH
Confidence 333444455555566689999888643 444333577788888888866554555566666655544 568889999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 256 PLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMR 335 (677)
Q Consensus 256 ~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (677)
+++...+++..+...+.+..++..+..++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+......
T Consensus 146 i~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (544)
T TIGR01842 146 LALGGAVVLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAG 225 (544)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766666666666666666665666666778889999999999999999999999999999988887665544333222
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy845 336 WLAVRIDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLVPEG 413 (677)
Q Consensus 336 ~~~~~l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~~~e~ 413 (677)
........+..+ +.++++|.+++.+|.+|+|.+.+++.++..+..|+..+.....+++.+..+.+|+.++++. +++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~-~~~~ 304 (544)
T TIGR01842 226 MLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLAN-YPSR 304 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-Cccc
Confidence 222222222211 3345567778889999999999999999999999999999999999999999999999843 2221
Q ss_pred CCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCcc
Q psy845 414 RGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493 (677)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G 493 (677)
... . . ..+..+.|+++||+|+|+++++++|+|+||+++|||++|||||||||||||+++|+|+|+|++|
T Consensus 305 ~~~-~--------~--~~~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G 373 (544)
T TIGR01842 305 DPA-M--------P--LPEPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSG 373 (544)
T ss_pred cCC-C--------C--CCCCCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 111 0 0 0112457999999999986555799999999999999999999999999999999999999999
Q ss_pred EEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcc
Q psy845 494 QIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 573 (677)
Q Consensus 494 ~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~ 573 (677)
+|.+||+|++++ +.+++|++++
T Consensus 374 ~i~~~g~~i~~~----------------------------------------------------------~~~~~~~~i~ 395 (544)
T TIGR01842 374 SVRLDGADLKQW----------------------------------------------------------DRETFGKHIG 395 (544)
T ss_pred eEEECCEehhhC----------------------------------------------------------CHHHHhhheE
Confidence 999999999888 7788999999
Q ss_pred cccccccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchh
Q psy845 574 VIPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKK 650 (677)
Q Consensus 574 ~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~I 650 (677)
||||||++|++|++||+++++ ++++++++++++.++++++++++|+|+||.+ +|.+||||||||++||||+++||++
T Consensus 396 ~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~i 475 (544)
T TIGR01842 396 YLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKL 475 (544)
T ss_pred EecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999998654 4899999999999999999999999999999 7999999999999999999999997
Q ss_pred h----------------------cc--cccce------ecccccccEEEEEeCCeeC
Q psy845 651 K----------------------KK--SGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 651 L----------------------~~--~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
+ .. +++|+ +++++.||+|++|++|+++
T Consensus 476 lilDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~ 532 (544)
T TIGR01842 476 VVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIA 532 (544)
T ss_pred EEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEE
Confidence 6 11 35772 4567789999999999974
No 29
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=5.4e-62 Score=552.62 Aligned_cols=438 Identities=18% Similarity=0.222 Sum_probs=346.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc--cch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy845 169 LYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFA--LPL---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAF 243 (677)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~--~~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~ 243 (677)
+.+.+...+.....+++-.++..++|+|+... +..||+ .++ .++|+|.+.+.... ...+..++..++..++.+
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~-~~~~~~~~~~g~i~srl~~Dv~~i~~~~-~~~~~~~~~~~~~~~~~~ 128 (569)
T PRK10789 51 LLRYVWRVLLFGASYQLAVELREDFYRQLSRQ-HPEFYLRHRTGDLMARATNDVDRVVFAA-GEGVLTLVDSLVMGCAVL 128 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHcCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 34444444444455666666777999999986 448884 344 55555666655322 334455666655555555
Q ss_pred HHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHH
Q psy845 244 LMI-CFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDE 322 (677)
Q Consensus 244 v~l-~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~ 322 (677)
+++ +.++|++++++++..++..++.+.+.++.++..+..++..+++.+.+.|.++|+++||+|+.|+.+.++|++..++
T Consensus 129 ~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~ 208 (569)
T PRK10789 129 IVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAED 208 (569)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHH
Confidence 455 4788988888777778877888888887777666667777889999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 323 NSTTLFLCSMAMRWLAVRIDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVE 400 (677)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~e 400 (677)
..+...+.................+ +.++++|.+++.+|.+++|.+.++..+...+..|+..+...+..++.+..+.+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ 288 (569)
T PRK10789 209 TGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYS 288 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7665554443333322222222211 33445566788899999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHH
Q psy845 401 RINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSL 480 (677)
Q Consensus 401 RI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTL 480 (677)
|+.++++. +++.... . .. ..+..++|+++||+|+|+++++++|+|+||+++|||++|||||||||||||
T Consensus 289 ri~~ll~~-~~~~~~~-~-------~~--~~~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL 357 (569)
T PRK10789 289 RIRAMLAE-APVVKDG-S-------EP--VPEGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTL 357 (569)
T ss_pred HHHHHHcC-CCcccCC-C-------CC--CCCCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHH
Confidence 99999843 2221111 0 00 011346799999999998655579999999999999999999999999999
Q ss_pred HHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccch
Q psy845 481 LVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 560 (677)
Q Consensus 481 i~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 560 (677)
+++|+|+|+|++|+|.+||+|++++
T Consensus 358 l~ll~g~~~p~~G~i~~~g~~~~~~------------------------------------------------------- 382 (569)
T PRK10789 358 LSLIQRHFDVSEGDIRFHDIPLTKL------------------------------------------------------- 382 (569)
T ss_pred HHHHhcccCCCCCEEEECCEEHhhC-------------------------------------------------------
Confidence 9999999999999999999999888
Q ss_pred hhhhHHHHhhhcccccccccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHH
Q psy845 561 ASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQL 637 (677)
Q Consensus 561 ~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQR 637 (677)
+.+++|++++||||||++|++|++|||+++. ++++++++++++.+++++++.++|+|+||.+ +|.+||||||||
T Consensus 383 ---~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qR 459 (569)
T PRK10789 383 ---QLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQR 459 (569)
T ss_pred ---CHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHH
Confidence 7889999999999999999999999999864 6899999999999999999999999999999 789999999999
Q ss_pred HHHHHHHhccchhh-----------------------cccccce------ecccccccEEEEEeCCeeC
Q psy845 638 LCLARALLRKTKKK-----------------------KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 638 IaIARALLr~p~IL-----------------------~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
++||||++++|+++ ..+++|+ +++++.||+|++|++|+++
T Consensus 460 i~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~ 528 (569)
T PRK10789 460 ISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIA 528 (569)
T ss_pred HHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEE
Confidence 99999999999977 1256772 4567889999999999974
No 30
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=2.1e-61 Score=549.67 Aligned_cols=423 Identities=19% Similarity=0.283 Sum_probs=342.2
Q ss_pred HHHHHHHHHHHHHhhhcccccccc--ch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy845 185 VFQNMWSMLFAFLMICFVFPWFAL--PL---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLI 259 (677)
Q Consensus 185 ~~q~~~~~~f~~~~~~~~~~~f~~--~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~lal~~l~ 259 (677)
+..++..++|+|+.... ..||+. ++ .++++|.+.+.+.+. ..+..++..++.+++.+++++.++|++++++++
T Consensus 87 ~~~~lr~~~~~~l~~l~-~~~~~~~~~g~~~s~~~~d~~~i~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~ 164 (585)
T TIGR01192 87 RRATLLTEAFGRIISMP-LSWHQQRGTSNALHTLLRATETLFGLWL-EFMRQHLATFVALFLLIPTAFAMDWRLSIVLMV 164 (585)
T ss_pred HHHHHHHHHHHHHHcCC-HHHhCCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344458999999974 599953 34 556666666665443 455566777777777778888999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 260 ITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAV 339 (677)
Q Consensus 260 i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (677)
+.+++.++.+.+.++.++..+...+..+++.+.+.|+++|+++||+|+.|+.+.+++++..++..+...+..........
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (585)
T TIGR01192 165 LGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASG 244 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888777777777788999999999999999999999999999998888766554443332222222
Q ss_pred HHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCC
Q psy845 340 RIDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLVPEGRGPI 417 (677)
Q Consensus 340 ~l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~~~e~~~~~ 417 (677)
....+..+ +.++++|.+++.+|.+++|.+.++..++..+..|+..+...+.+++.+..+.+|+.++++. +++.+.+.
T Consensus 245 ~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~-~~~~~~~~ 323 (585)
T TIGR01192 245 LNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDS-VFQREEPA 323 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CccccCCc
Confidence 22222221 3345567778889999999999999999999999999999999999999999999998843 22211110
Q ss_pred CCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEE
Q psy845 418 TSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKI 497 (677)
Q Consensus 418 ~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~I 497 (677)
. .....+..+.++++||+|+|+++ +++|+|+||++++||++|||||||||||||+++|+|+|+|++|+|.+
T Consensus 324 ~--------~~~~~~~~~~i~~~~v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 394 (585)
T TIGR01192 324 D--------APELPNVKGAVEFRHITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILI 394 (585)
T ss_pred c--------CCCCCCCCCeEEEEEEEEECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEE
Confidence 0 00011124579999999999864 35999999999999999999999999999999999999999999999
Q ss_pred CCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccc
Q psy845 498 DDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQ 577 (677)
Q Consensus 498 dG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Q 577 (677)
||+|++++ +.+++|++++||||
T Consensus 395 ~g~~~~~~----------------------------------------------------------~~~~~~~~i~~v~q 416 (585)
T TIGR01192 395 DGIDINTV----------------------------------------------------------TRESLRKSIATVFQ 416 (585)
T ss_pred CCEEhhhC----------------------------------------------------------CHHHHHhheEEEcc
Confidence 99999888 78899999999999
Q ss_pred cccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh---
Q psy845 578 DPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK--- 651 (677)
Q Consensus 578 d~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL--- 651 (677)
||++|++|++|||.++. +++++|++++++.+++++++.++|+|+||.+ +|.+||||||||++||||++++|+++
T Consensus 417 ~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililD 496 (585)
T TIGR01192 417 DAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLD 496 (585)
T ss_pred CCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 99999999999998764 5789999999999999999999999999998 79999999999999999999999977
Q ss_pred --------------------cccccce------ecccccccEEEEEeCCeeC
Q psy845 652 --------------------KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------------------~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
..+++|+ +++++.||+|++|++|+++
T Consensus 497 Epts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~ 548 (585)
T TIGR01192 497 EATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLI 548 (585)
T ss_pred CCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEE
Confidence 1246772 4567889999999999974
No 31
>KOG0056|consensus
Probab=100.00 E-value=2.1e-64 Score=542.90 Aligned_cols=415 Identities=24% Similarity=0.337 Sum_probs=322.7
Q ss_pred HHHHHHHHHhhhcccccc--c-cc-h----hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy845 189 MWSMLFAFLMICFVFPWF--A-LP-L----LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLII 260 (677)
Q Consensus 189 ~~~~~f~~~~~~~~~~~f--~-~~-~----~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~lal~~l~i 260 (677)
+-..+|+|+-.++. +|+ + +. + .|=|+..+.++.+.-+.. |.++.-.+.++ .+....++|+.+++++.
T Consensus 294 ie~~lfrHlh~LSl-rwHL~rrtGeVLrvmdrGtssvtll~yvVF~i~-PtllDl~va~v---YF~~~Fn~wFgLIVfl~ 368 (790)
T KOG0056|consen 294 IETELFRHLHNLSL-RWHLNRRTGEVLRVMDRGTSSVTLLEYVVFQIG-PTLLDLGVAMV---YFFIKFNIWFGLIVFLM 368 (790)
T ss_pred HHHHHHHHHHhhce-eeeecccccceeehhccCcchhhHHHHHHhhcc-cHHHHhhhhhh---hhhhhHhHHHHHHHHHH
Confidence 34489999999976 999 3 33 2 444667776666553322 33333332222 22345689999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 261 TTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVR 340 (677)
Q Consensus 261 ~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (677)
..++..+......--.+.+|....+..+-.+.-.+++-+.+|||-|++|+.+.++|.+....+.+..++.......+...
T Consensus 369 m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~ 448 (790)
T KOG0056|consen 369 MLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIV 448 (790)
T ss_pred HHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877653222111111122222222333456788999999999999999999999999999888776655444333322
Q ss_pred HHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCC-CCC
Q psy845 341 IDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLVPEGR-GPI 417 (677)
Q Consensus 341 l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~~~e~~-~~~ 417 (677)
-+.+..+ +...++..+.+..+.+++|..+.+.+|..++..|++.+....-.+|.++.-.|+++|++++ ++|.. .|.
T Consensus 449 Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllke-e~eVvd~P~ 527 (790)
T KOG0056|consen 449 QNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKE-EPEVVDLPG 527 (790)
T ss_pred hhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhc-CchhhcCCC
Confidence 2222221 1111122235568899999999999999999999999999999999999999999999954 44422 111
Q ss_pred CCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEE
Q psy845 418 TSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKI 497 (677)
Q Consensus 418 ~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~I 497 (677)
. . +-...+|+|+|+||+|.|+++ ++||+||||+++||+++|+|||||+||||++++|.||||.++|+|.|
T Consensus 528 a--------~-pl~~~~G~i~fsnvtF~Y~p~-k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~i 597 (790)
T KOG0056|consen 528 A--------P-PLKVTQGKIEFSNVTFAYDPG-KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITI 597 (790)
T ss_pred C--------C-CccccCCeEEEEEeEEecCCC-CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEE
Confidence 1 1 111247899999999999877 57999999999999999999999999999999999999999999999
Q ss_pred CCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccc
Q psy845 498 DDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQ 577 (677)
Q Consensus 498 dG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Q 577 (677)
||+||+++ +..+||++||+|||
T Consensus 598 DgqdIrnv----------------------------------------------------------t~~SLRs~IGVVPQ 619 (790)
T KOG0056|consen 598 DGQDIRNV----------------------------------------------------------TQSSLRSSIGVVPQ 619 (790)
T ss_pred cCchHHHH----------------------------------------------------------HHHHHHHhcCcccC
Confidence 99999998 89999999999999
Q ss_pred cccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh---
Q psy845 578 DPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK--- 651 (677)
Q Consensus 578 d~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL--- 651 (677)
|..||++||.+||++++ .+++||+++|++.|++||-|.++||||+|++ +|-+||||||||+||||+++|+|.|.
T Consensus 620 DtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLD 699 (790)
T KOG0056|consen 620 DTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLD 699 (790)
T ss_pred cceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEc
Confidence 99999999999999876 6999999999999999999999999999999 89999999999999999999999876
Q ss_pred --------------------cccccc-e-----ecccccccEEEEEeCCeeC
Q psy845 652 --------------------KKSGVN-I-----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------------------~~~~~T-I-----LsTI~~aDrIlVLd~GrIV 677 (677)
..++|| | +||+.+||.|+|++||+|+
T Consensus 700 EATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~Iv 751 (790)
T KOG0056|consen 700 EATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIV 751 (790)
T ss_pred chhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEe
Confidence 135677 3 8999999999999999986
No 32
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-60 Score=527.19 Aligned_cols=446 Identities=21% Similarity=0.252 Sum_probs=354.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhcccccc-ccc-h---hHHhhhHHHHHHHhhhhHHHHH
Q psy845 162 PLLIITTLYHLISKVFRSVYLRSVFQ----NMWSMLFAFLMICFVFPWF-ALP-L---LIITTLYHLISKVFRSVYLRSV 232 (677)
Q Consensus 162 ~~l~~~~~~~~~~~~~~~~~~~~~~q----~~~~~~f~~~~~~~~~~~f-~~~-~---~~~t~~~~~i~~v~~s~~l~~i 232 (677)
..|++...+|.+..-.+.......++ +|....+.++-...+ .|= ..| + ++.+.=+|.... +.+.++|..
T Consensus 44 ~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp-~~~~~~~~g~~atl~~egve~l~~-Y~~ryLPq~ 121 (559)
T COG4988 44 ILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGP-AFIAQKPAGSAATLALEGIEQLEP-YYARYLPQM 121 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh-hhhcCCCcchHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 45666677777766665544444444 444466777777654 343 244 3 444444444444 346789999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHH
Q psy845 233 FQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDF 312 (677)
Q Consensus 233 l~~~~~ll~~~v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~ 312 (677)
+.+.+..+..++.+++.+|.-++++++..|++.++.....++.++..+.+......+.+++.|.++|+.|+|.|++.+..
T Consensus 122 ~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~ 201 (559)
T COG4988 122 FLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEAT 201 (559)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHH
Confidence 99999999999999999999888887777777777777777777777777777888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 313 VRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIAMAI--ITGLTVAFH-GSVSPALAGLALTYASHVTGLLQFTVRVF 389 (677)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l--~~g~~lv~~-G~ls~g~l~~~l~~~~~l~~~l~~l~~~~ 389 (677)
.++..+..+++++.....-+.....+..+++++.+.+++ +..+..... |.++......++..+..++.|+..+...+
T Consensus 202 ~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~f 281 (559)
T COG4988 202 EERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFF 281 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999998888766554444434445566666533322 222234445 78988877788888899999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEE
Q psy845 390 VETELNFLAVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGI 469 (677)
Q Consensus 390 ~~l~~~~~s~eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAI 469 (677)
+.-..+.++.+++..+++ .+++.....+ +....+..+.+++.+|++|+|++++ ++++|+||++++||++||
T Consensus 282 H~~~~g~aa~d~i~~~l~-~~~~~~~~~~-------~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~tal 352 (559)
T COG4988 282 HAAAAGEAAADKLFTLLE-SPVATPGSGE-------KAEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTAL 352 (559)
T ss_pred HHHhhhhhHHHHHHHHhc-CCCCCCCCcc-------ccccccCCCceeeecceEEecCCCC-cccCCceeEecCCcEEEE
Confidence 999999999999999983 3333221110 0011122234566679999999875 799999999999999999
Q ss_pred EcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhc
Q psy845 470 VGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELS 549 (677)
Q Consensus 470 VGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~ 549 (677)
||+||||||||+++|+|+.+|++|+|.+||+|.+++
T Consensus 353 vG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l-------------------------------------------- 388 (559)
T COG4988 353 VGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDL-------------------------------------------- 388 (559)
T ss_pred ECCCCCCHHHHHHHHhCcCCCCCceEEECCcccccc--------------------------------------------
Confidence 999999999999999999999999999999999999
Q ss_pred cccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--C
Q psy845 550 SGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--Q 626 (677)
Q Consensus 550 ~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~ 626 (677)
+.++||+++++|||+|+||+|||||||++++ +++|||+++|++++++.||+.. |+|+||.+ +
T Consensus 389 --------------~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~ 453 (559)
T COG4988 389 --------------SPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEG 453 (559)
T ss_pred --------------CHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccC
Confidence 8999999999999999999999999999876 5899999999999999999999 99999999 8
Q ss_pred CCCCChHHHHHHHHHHHHhccchhh-----------------------cccccc---e---ecccccccEEEEEeCCeeC
Q psy845 627 GDQLSLGEKQLLCLARALLRKTKKK-----------------------KKSGVN---I---TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 627 G~~LSGGQRQRIaIARALLr~p~IL-----------------------~~~~~T---I---LsTI~~aDrIlVLd~GrIV 677 (677)
|.+|||||+||+++|||++++++++ ..+++| | ++.+++||+|+|||+||++
T Consensus 454 G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~ 533 (559)
T COG4988 454 GAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLV 533 (559)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCcee
Confidence 9999999999999999999998866 235677 2 5678899999999999985
No 33
>KOG0057|consensus
Probab=100.00 E-value=5e-61 Score=525.74 Aligned_cols=423 Identities=25% Similarity=0.314 Sum_probs=319.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccc--ch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-HhhH
Q psy845 179 SVYLRSVFQNMWSMLFAFLMICFVFPWFAL--PL---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICF-VFPW 252 (677)
Q Consensus 179 ~~~~~~~~q~~~~~~f~~~~~~~~~~~f~~--~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~-~~~~ 252 (677)
+...|.+.+...++.|.|.|.+. .+||-. ++ .++.|=...++++... .+..++..++-+......+.+ ..+.
T Consensus 99 a~v~q~~iR~~~~~vf~~~~~ld-~~~~~~~~tG~l~~~idRgsraI~~vl~~-~V~~i~p~~~~i~~v~~~l~~~~Ga~ 176 (591)
T KOG0057|consen 99 AKVAQRVIRDSSSDVFRHLMSLD-LSFFLSRGTGALNRIIDRGSRAISFVLSA-MVFNIIPTLFEIALVSGILYYKFGAA 176 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh-HHhhcCCCcchHHHHHHhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 55666666667779999999985 599944 34 3334444556666643 333344444443333322222 2344
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q psy845 253 FALPLLIITTLYHLIS---KVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFL 329 (677)
Q Consensus 253 lal~~l~i~~l~~~i~---~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~ 329 (677)
.+++++.....+..++ ...|.+.| +..+.+.......+-|++.+.++||.||-|+++.++|+....++.+....
T Consensus 177 ~~li~~~~v~~Y~a~Ti~~t~~Rn~fR---~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~ 253 (591)
T KOG0057|consen 177 FALITLGTVGAYAAFTIVVTRWRNRFR---KAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLK 253 (591)
T ss_pred HHHHHHHHHHHhheeEEeehhHHHHHH---HHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhh
Confidence 5555554444444332 22222222 22333344566789999999999999999999999999999998877766
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy845 330 CSMAMRWLAVRIDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSK 407 (677)
Q Consensus 330 ~~~~~~~~~~~l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~ 407 (677)
+......+.+.-..+... ..+...+..-+.+|.++.|.+....++..++..|++.+...+.++.++..-.+......+
T Consensus 254 ~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~ 333 (591)
T KOG0057|consen 254 YSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLE 333 (591)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhh
Confidence 655544444333333221 222333333456789999999999999999999999999999999888887766655432
Q ss_pred hcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcC
Q psy845 408 KLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 408 ~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
..+..... ..+.. ..++.|+|+||+|+|+++ ++||+++||+|++||+|||||+|||||||++|+|+||
T Consensus 334 ~~~~i~~~----------~~~i~-~~~~~I~F~dV~f~y~~k-~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF 401 (591)
T KOG0057|consen 334 VDEDIQEA----------ALPIE-LFGGSIEFDDVHFSYGPK-RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRF 401 (591)
T ss_pred hhhhhhhc----------cCCcc-cCCCcEEEEeeEEEeCCC-CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 11111000 00111 235679999999999876 4699999999999999999999999999999999999
Q ss_pred CCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHH
Q psy845 488 VELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET 567 (677)
Q Consensus 488 y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~ 567 (677)
+| ++|+|+|||+|++++ ++++
T Consensus 402 ~d-~sG~I~IdG~dik~~----------------------------------------------------------~~~S 422 (591)
T KOG0057|consen 402 FD-YSGSILIDGQDIKEV----------------------------------------------------------SLES 422 (591)
T ss_pred hc-cCCcEEECCeeHhhh----------------------------------------------------------ChHH
Confidence 99 999999999999999 8999
Q ss_pred HhhhcccccccccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHH
Q psy845 568 LRSRLSVIPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARAL 644 (677)
Q Consensus 568 LR~~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARAL 644 (677)
+|+.|||||||..||++||-+||.+++ ++++||+.++||.+++||-+.++|+||+|.+ +|..||||||||+++|||+
T Consensus 423 lR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~ 502 (591)
T KOG0057|consen 423 LRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAF 502 (591)
T ss_pred hhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHH
Confidence 999999999999999999999999876 7899999999999999999999999999999 9999999999999999999
Q ss_pred hccchhh-----------------------cccccc---e---ecccccccEEEEEeCCeeC
Q psy845 645 LRKTKKK-----------------------KKSGVN---I---TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 645 Lr~p~IL-----------------------~~~~~T---I---LsTI~~aDrIlVLd~GrIV 677 (677)
+|||||+ ...++| | ++++++||+|+|+|||++.
T Consensus 503 lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~ 564 (591)
T KOG0057|consen 503 LKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVK 564 (591)
T ss_pred hcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeE
Confidence 9999987 256788 2 7899999999999999974
No 34
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=2.4e-59 Score=529.76 Aligned_cols=441 Identities=14% Similarity=0.126 Sum_probs=333.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc--ch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy845 169 LYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFAL--PL---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAF 243 (677)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~~--~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~ 243 (677)
+.+.+...+......++-+++...+|+|++.. +..||+. ++ .++|+|.+.+++.+. . +..++.+++++++++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~-~~~~~~~~~~G~l~srl~~Dv~~i~~~~~-~-~~~~~~~~~~~~~~~ 144 (555)
T TIGR01194 68 LFRIGADIFPAYAGMHIIANLRIALCEKILGA-PIEEIDRRGAHNLIPLLTHDIDQINAFLF-I-FPPIAIALAIFFFCI 144 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHhcCcchhhHHHhhhHHHHHHHHH-H-HHHHHHHHHHHHHHH
Confidence 33334434445555556666777999999996 4589842 33 778888888888764 3 566788888888888
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHH--HHHHHHHHHHH
Q psy845 244 LMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQ--DFVRRFCEQYD 321 (677)
Q Consensus 244 v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~--~~~~~~~~~~~ 321 (677)
+++++++|++++++++.+++..++...+.++.++..+..++..+++++.+.|.++|++++|+|+.++ ...+++++..+
T Consensus 145 ~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~ 224 (555)
T TIGR01194 145 AYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESAN 224 (555)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHH
Confidence 8999999999888777777776666666666666566666667889999999999999999999954 45677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 322 ENSTTLFLCSMAMRWLAVRIDVLAVIAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVER 401 (677)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eR 401 (677)
+..+..................+..+..++.+.. ....|.++.|.+.+++.+...+.+|+..+...+.+++++.+|.+|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~r 303 (555)
T TIGR01194 225 NIADLHIIEILIFIAAENFGQLLFFLLIGCALFA-AAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQR 303 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655443332222111111122211111111100 112378999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCC---CCccccceeeEEeCCcEEEEEcCCCCChH
Q psy845 402 INNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDN---WPLVLANVSFRINHGENIGIVGRTGAGKS 478 (677)
Q Consensus 402 I~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~---~~~VLknISl~I~~GE~VAIVGpSGSGKS 478 (677)
+.++++...+++..+...+.+. ..........++|+++||+|+|+++ ++++|+|+||++++||++|||||||||||
T Consensus 304 i~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKS 382 (555)
T TIGR01194 304 LADFGERFNEPEPELELSDADN-VLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKS 382 (555)
T ss_pred HHHHHhhhcccccccccccccc-ccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHH
Confidence 9999742111111000000000 0000001124679999999999753 23699999999999999999999999999
Q ss_pred HHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhcccccccccc
Q psy845 479 SLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDF 558 (677)
Q Consensus 479 TLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~ 558 (677)
||+++|+|+|+|++|+|.+||+|++++
T Consensus 383 Tl~~ll~g~~~p~~G~i~~~g~~i~~~----------------------------------------------------- 409 (555)
T TIGR01194 383 TLAKLFCGLYIPQEGEILLDGAAVSAD----------------------------------------------------- 409 (555)
T ss_pred HHHHHHhCCCCCCCcEEEECCEECCCC-----------------------------------------------------
Confidence 999999999999999999999999998
Q ss_pred chhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHH
Q psy845 559 DIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLL 638 (677)
Q Consensus 559 ~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRI 638 (677)
+.+++|+++++|+||+++|++|++||+. .++++++++++++.++++++++++|+||||. .+||||||||+
T Consensus 410 -----~~~~~~~~i~~v~q~~~lf~~ti~~n~~--~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~---~~LSgGq~qRl 479 (555)
T TIGR01194 410 -----SRDDYRDLFSAIFADFHLFDDLIGPDEG--EHASLDNAQQYLQRLEIADKVKIEDGGFSTT---TALSTGQQKRL 479 (555)
T ss_pred -----CHHHHHhhCcEEccChhhhhhhhhcccc--cchhHHHHHHHHHHcCCchhhcccccccCCc---ccCCHHHHHHH
Confidence 7889999999999999999999999974 3578999999999999999999999999994 79999999999
Q ss_pred HHHHHHhccchhh-----------------------c--ccccce------ecccccccEEEEEeCCeeC
Q psy845 639 CLARALLRKTKKK-----------------------K--KSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 639 aIARALLr~p~IL-----------------------~--~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
+||||++++|+++ . .+++|+ +++++.||+|+||++|+++
T Consensus 480 alaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~ 549 (555)
T TIGR01194 480 ALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIV 549 (555)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEE
Confidence 9999999999976 0 136772 4577889999999999984
No 35
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-58 Score=503.20 Aligned_cols=397 Identities=23% Similarity=0.294 Sum_probs=310.0
Q ss_pred hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcccH
Q psy845 211 LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLI-ITTLYHLISKVFRIAVRELKRMENVSRSPI 289 (677)
Q Consensus 211 ~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~lal~~l~-i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l 289 (677)
.|++.|+|.+++.+--...| .+..+....+..+.+.+.+|++++.+.. +..+.++++..+.+..++..+.....++.+
T Consensus 119 ~RLvaDVd~Ld~lyLRvi~P-~~~a~~~~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~l 197 (573)
T COG4987 119 NRLVADVDALDNLYLRVIAP-AVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAAL 197 (573)
T ss_pred HHHHhhHHHHhhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 77788888888777655555 4444445555555667888887765443 344445567777777777777777778889
Q ss_pred HHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHhcCCCHHH
Q psy845 290 FSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIAMA-IITGLT-VAFHGSVSPAL 367 (677)
Q Consensus 290 ~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~-l~~g~~-lv~~G~ls~g~ 367 (677)
.+++.|.+.|..+.+.||+++.+.+++.+..+...+...+......|....+.++..+.++ ..++.. .+-.|..+...
T Consensus 198 r~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~ 277 (573)
T COG4987 198 RSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPG 277 (573)
T ss_pred HHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhH
Confidence 9999999999999999999999999998888877776666666666655555444442222 222222 24456665433
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEe
Q psy845 368 AGLALTYASHVTGLLQFTV-RVFVETELNFLAVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRY 446 (677)
Q Consensus 368 l~~~l~~~~~l~~~l~~l~-~~~~~l~~~~~s~eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY 446 (677)
+.+++.......+++..+. ..+.+.++...|++|+.++.+ .++|...+.+ .... .+..++++||||+|
T Consensus 278 aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~-q~~e~~~~~~--------~~~~--~~~~l~~~~vsF~y 346 (573)
T COG4987 278 AALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILD-QKPEVTFPDE--------QTAT--TGQALELRNVSFTY 346 (573)
T ss_pred HHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhcc-CCcccCCCcc--------ccCC--ccceeeeccceeec
Confidence 3333433345555665555 677889999999999999984 3333222211 0111 11279999999999
Q ss_pred CCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCcccccc
Q psy845 447 RDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG 526 (677)
Q Consensus 447 ~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~ 526 (677)
+++++++|+|+||++++||||||+|||||||||++++++|-|+|++|+|..+|.|++++
T Consensus 347 ~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l--------------------- 405 (573)
T COG4987 347 PGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASL--------------------- 405 (573)
T ss_pred CCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhC---------------------
Confidence 99887899999999999999999999999999999999999999999999999999998
Q ss_pred ccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC-CCChHHHHHHH
Q psy845 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG-RCHDTELWDAL 605 (677)
Q Consensus 527 ~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al 605 (677)
+.+++|+.+++++|+++||++|+|||++..+ ++||||+++|+
T Consensus 406 -------------------------------------~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL 448 (573)
T COG4987 406 -------------------------------------DEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAAL 448 (573)
T ss_pred -------------------------------------ChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHH
Confidence 8889999999999999999999999998754 79999999999
Q ss_pred HHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh-----------------------cccccce--
Q psy845 606 EKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK-----------------------KKSGVNI-- 658 (677)
Q Consensus 606 ~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL-----------------------~~~~~TI-- 658 (677)
+++|+++++++.|+||||.+ +|.+||||||||+||||++++|+|++ ..+|||+
T Consensus 449 ~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~ 528 (573)
T COG4987 449 QQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLM 528 (573)
T ss_pred HHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEE
Confidence 99999999999999999999 89999999999999999999999865 3578882
Q ss_pred ----ecccccccEEEEEeCCeeC
Q psy845 659 ----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 659 ----LsTI~~aDrIlVLd~GrIV 677 (677)
+.-++.||||+|||+||++
T Consensus 529 vTHrL~~le~~drIivl~~Gkii 551 (573)
T COG4987 529 VTHRLRGLERMDRIIVLDNGKII 551 (573)
T ss_pred EecccccHhhcCEEEEEECCeee
Confidence 4456789999999999985
No 36
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=5.5e-58 Score=564.40 Aligned_cols=437 Identities=17% Similarity=0.227 Sum_probs=336.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc-cch----hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy845 169 LYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFA-LPL----LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAF 243 (677)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~-~~~----~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~ 243 (677)
++..+...+..+..+++-+++..++|+|++.. ++.||| .|. ++++.|.+.+++.+ +..+..++..++++++++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~-~~~~fd~~~~~~l~s~l~~d~~~i~~~i-~~~~~~~~~~~~~~i~~~ 189 (1466)
T PTZ00265 112 ILSFISSFCMDVVTTKILKTLKLEFLKSVFYQ-DGQFHDNNPGSKLTSDLDFYLEQVNAGI-GTKFITIFTYASAFLGLY 189 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 33444444445555566666667999999996 569996 454 33333344455543 345678899999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHH
Q psy845 244 LMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDEN 323 (677)
Q Consensus 244 v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~ 323 (677)
+++++++|.++++++++.|+++++...+.++.+...+..+...++..+.++|+++|+++||+|+.|+.+.++|++..+..
T Consensus 190 i~~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~ 269 (1466)
T PTZ00265 190 IWSLFKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLY 269 (1466)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHH
Confidence 99999999999998888898888888888888777777777778899999999999999999999999999999888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 324 STTLFLCSMAMRWLAVRIDVLAV--IAMAIITGLTVAFHG--------SVSPALAGLALTYASHVTGLLQFTVRVFVETE 393 (677)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~~l~~--l~~~l~~g~~lv~~G--------~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~ 393 (677)
.+...+.............++.. .++++++|..++.+| .+++|.+.+++.+.......+..+...+..++
T Consensus 270 ~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~ 349 (1466)
T PTZ00265 270 SKYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYM 349 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66554443333332222222222 244556677777775 46777666655544444444556666788899
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCC-CCccccceeeEEeCCcEEEEEcC
Q psy845 394 LNFLAVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDN-WPLVLANVSFRINHGENIGIVGR 472 (677)
Q Consensus 394 ~~~~s~eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~-~~~VLknISl~I~~GE~VAIVGp 472 (677)
.+..|.+|+.++++. +++.+...+ ....+..++|+++||+|+|+++ +.++|+|+||++++||++|||||
T Consensus 350 ~a~~a~~ri~~ii~~-~~~~~~~~~---------~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~ 419 (1466)
T PTZ00265 350 KSLEATNSLYEIINR-KPLVENNDD---------GKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGE 419 (1466)
T ss_pred HHHHHHHHHHHHHcC-CCCCCCCCC---------CccCCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECC
Confidence 999999999999943 333211110 0011122479999999999864 24699999999999999999999
Q ss_pred CCCChHHHHHHHhcCCCCCccEEEE-CCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccc
Q psy845 473 TGAGKSSLLVALFRLVELSSGQIKI-DDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSG 551 (677)
Q Consensus 473 SGSGKSTLi~LL~r~y~p~~G~I~I-dG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g 551 (677)
||||||||+++|+|+|+|++|+|.+ ||+|++++
T Consensus 420 SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~---------------------------------------------- 453 (1466)
T PTZ00265 420 SGCGKSTILKLIERLYDPTEGDIIINDSHNLKDI---------------------------------------------- 453 (1466)
T ss_pred CCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhC----------------------------------------------
Confidence 9999999999999999999999999 57898887
Q ss_pred cccccccchhhhhHHHHhhhcccccccccccccchhhccccCC-------------------------------------
Q psy845 552 QIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG------------------------------------- 594 (677)
Q Consensus 552 ~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~------------------------------------- 594 (677)
+.+++|++||||||+|.||++||+|||+++.
T Consensus 454 ------------~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (1466)
T PTZ00265 454 ------------NLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGD 521 (1466)
T ss_pred ------------CHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccch
Confidence 7778888888888888888889999887631
Q ss_pred ---------------------CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh
Q psy845 595 ---------------------RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 595 ---------------------~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
+++|+++++|++.+++++|+.++|+||||.+ +|.+||||||||++||||++++|+++
T Consensus 522 ~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~IL 601 (1466)
T PTZ00265 522 LNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKIL 601 (1466)
T ss_pred hhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 2567899999999999999999999999999 79999999999999999999999977
Q ss_pred ----------------------cc---cccc-e-----ecccccccEEEEEeCCe
Q psy845 652 ----------------------KK---SGVN-I-----TRPVTSCDKVLVMDNGQ 675 (677)
Q Consensus 652 ----------------------~~---~~~T-I-----LsTI~~aDrIlVLd~Gr 675 (677)
.. +++| | +++++.||+|+||++|+
T Consensus 602 lLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~ 656 (1466)
T PTZ00265 602 ILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRE 656 (1466)
T ss_pred EEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCc
Confidence 11 3677 2 56788999999999984
No 37
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-59 Score=497.41 Aligned_cols=426 Identities=23% Similarity=0.317 Sum_probs=332.8
Q ss_pred HHHHHHHHHH----HHHHHHhhhcccccc--cc--chhHH-hhhHHHHHHHhhhhHHHHHHHHHHHHHH-HHHHHHHHhh
Q psy845 182 LRSVFQNMWS----MLFAFLMICFVFPWF--AL--PLLII-TTLYHLISKVFRSVYLRSVFQNMWSMLF-AFLMICFVFP 251 (677)
Q Consensus 182 ~~~~~q~~~~----~~f~~~~~~~~~~~f--~~--~~~~~-t~~~~~i~~v~~s~~l~~il~~~~~ll~-~~v~l~~~~~ 251 (677)
.-+++|+... .-|.|...+.. +|+ +. |..|. .+=-.-|+.+.. +.+..++.-++-+.. +.++...++|
T Consensus 6 fs~v~q~a~r~la~~~F~h~~~Lsl-~fHl~r~TGglsR~ierGtkgI~~i~~-~~l~~i~P~~~Ei~l~~vi~~~~~~~ 83 (497)
T COG5265 6 FSPVGQIAVRVLAYVTFFHLHSLSL-RFHLERRTGGLSRAIERGTKGIETILR-WILFNILPTLVEISLVAVILWRVYGW 83 (497)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcch-hhhhhcccCceeeHhhcCcccHHHHHH-HHHHHhhHHHHHHHHHHHHHHhhccc
Confidence 3445555554 56999999864 999 22 22322 111112333332 222223333332222 2233445789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 252 WFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCS 331 (677)
Q Consensus 252 ~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~ 331 (677)
|.++++++.++++.++......---..+|..+++.++.++...+++-+.+++|.|+-|+.+.++|++..+.+.++..+..
T Consensus 84 ~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~ 163 (497)
T COG5265 84 WFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVH 163 (497)
T ss_pred HHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHH
Confidence 99988888888887775443333334455566677888899999999999999999999999999999999988776666
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy845 332 MAMRWLAVRIDVLAVIA--MAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKL 409 (677)
Q Consensus 332 ~~~~~~~~~l~~l~~l~--~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~ 409 (677)
....|++..-..+.... .....+..-+..|.+|+|.++...++..+++.|++.+.....++.++....|+..++++ .
T Consensus 164 ~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~-~ 242 (497)
T COG5265 164 VSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLD-V 242 (497)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhc-c
Confidence 55555554333332211 12223334567899999999999999999999999999999999999999999999983 3
Q ss_pred CCCCCCCCCCccccccccccCC-CCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 410 VPEGRGPITSEFGQVKVKLADW-PRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 410 ~~e~~~~~~~~~~~~~~~~~~~-~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+.+...... .+.-+ ...|.+.|+||+|.|.++ .++|+|+||++++|+++|+|||||+||||+.++|.|||
T Consensus 243 ~~~v~d~pd--------a~~L~~~~~g~v~F~~V~F~y~~~-r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFy 313 (497)
T COG5265 243 EAEVSDAPD--------APPLWPVRLGAVAFINVSFAYDPR-RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFY 313 (497)
T ss_pred chhhccCCC--------CccccccccceEEEEEEEeecccc-chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHh
Confidence 333221100 11122 246889999999999877 46999999999999999999999999999999999999
Q ss_pred CCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHH
Q psy845 489 ELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL 568 (677)
Q Consensus 489 ~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~L 568 (677)
|+++|+|.+||+|++++ ..+++
T Consensus 314 D~~sG~I~id~qdir~v----------------------------------------------------------tq~sl 335 (497)
T COG5265 314 DVNSGSITIDGQDIRDV----------------------------------------------------------TQQSL 335 (497)
T ss_pred CCcCceEEEcchhHHHh----------------------------------------------------------HHHHH
Confidence 99999999999999998 89999
Q ss_pred hhhcccccccccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHh
Q psy845 569 RSRLSVIPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALL 645 (677)
Q Consensus 569 R~~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALL 645 (677)
|+.||+||||..||++|+..|+.+++ .+++||+++|+|.+++++|++.+|+||||.| +|-.||||||||+||||++|
T Consensus 336 R~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~il 415 (497)
T COG5265 336 RRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTIL 415 (497)
T ss_pred HHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHh
Confidence 99999999999999999999999876 6899999999999999999999999999999 89999999999999999999
Q ss_pred ccchhh-----------------------cccccc---e---ecccccccEEEEEeCCeeC
Q psy845 646 RKTKKK-----------------------KKSGVN---I---TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 646 r~p~IL-----------------------~~~~~T---I---LsTI~~aDrIlVLd~GrIV 677 (677)
|+|+|+ ..+++| | +||+.+||.|+||+||+|+
T Consensus 416 k~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~ 476 (497)
T COG5265 416 KNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIV 476 (497)
T ss_pred cCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEE
Confidence 999987 135677 3 8999999999999999985
No 38
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=3.5e-54 Score=486.57 Aligned_cols=422 Identities=18% Similarity=0.169 Sum_probs=310.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc--ch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy845 171 HLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFAL--PL---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLM 245 (677)
Q Consensus 171 ~~~~~~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~~--~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~ 245 (677)
..+.+-......+++-+++..++|+|+... +.+||+. ++ .++|+|.+.+...+. .++.++.+++.+++++++
T Consensus 65 ~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~-~~~~~~~~~~g~~lsrl~~dv~~i~~~~~--~l~~~~~~~~~~i~~~~~ 141 (547)
T PRK10522 65 TLGSQLALTTLGHHFVYRLRSEFIKRILDT-HVERIEQLGSASLLASLTSDVRNITIAFV--RLPELVQGIILTLGSAAY 141 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHHHHhccCccchHHHHHhhHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 333434445555666667777999999987 4588843 33 666777777666432 356788888889999989
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccH---HHHHHHHHHHHHH
Q psy845 246 ICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKE---QDFVRRFCEQYDE 322 (677)
Q Consensus 246 l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e---~~~~~~~~~~~~~ 322 (677)
+++++|++++++++..++..++...+.++.++..+..++..+++++.+.|.++|+++++ ++.+ +.+.+++++..++
T Consensus 142 l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~ 220 (547)
T PRK10522 142 LAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQE 220 (547)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHH
Confidence 99999999988888888777777777777776666666777889999999999999996 4443 3556777777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 323 NSTTLFLCSMAMRWLAVRIDVLAVIAMAIITGLTVAFHG---SVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAV 399 (677)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~g~~lv~~G---~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~ 399 (677)
..+............. ....+......+..++..| ..+.+....+..+...+..|+..+...+.+++.+..+.
T Consensus 221 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~ 296 (547)
T PRK10522 221 YRHHIIRADTFHLSAV----NWSNIMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAF 296 (547)
T ss_pred HHhhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544333221111111 1111111112222222222 22333344444444456789999999999999999999
Q ss_pred HHHHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHH
Q psy845 400 ERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSS 479 (677)
Q Consensus 400 eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKST 479 (677)
+|+.++.+. +++.+.+.. . ..+..+.++++||+|+|+++ +++|+|+||+++|||++||||||||||||
T Consensus 297 ~ri~~l~~~-~~~~~~~~~--------~--~~~~~~~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKST 364 (547)
T PRK10522 297 NKLNKLALA-PYKAEFPRP--------Q--AFPDWQTLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKST 364 (547)
T ss_pred HHHHHHhcc-ccccccccc--------c--ccCcCceEEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHHH
Confidence 999998732 221110100 0 01123579999999999854 46999999999999999999999999999
Q ss_pred HHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 480 LLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 480 Li~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
|+++|+|+|+|++|+|.+||+|++++
T Consensus 365 L~~ll~g~~~~~~G~i~~~g~~~~~~------------------------------------------------------ 390 (547)
T PRK10522 365 LAMLLTGLYQPQSGEILLDGKPVTAE------------------------------------------------------ 390 (547)
T ss_pred HHHHHhCCCCCCCeEEEECCEECCCC------------------------------------------------------
Confidence 99999999999999999999999888
Q ss_pred hhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHH
Q psy845 560 IASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLC 639 (677)
Q Consensus 560 ~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIa 639 (677)
+.+++|++++|||||+++|++|++|| +.+.++++++++++.+++++++. .|+|. ++|.+||||||||++
T Consensus 391 ----~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~-~~~~~---~~G~~LSgGq~qRl~ 459 (547)
T PRK10522 391 ----QPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLE-LEDGR---ISNLKLSKGQKKRLA 459 (547)
T ss_pred ----CHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhh-ccccC---CCCCCCCHHHHHHHH
Confidence 78899999999999999999999999 34677889999999999988775 35553 268999999999999
Q ss_pred HHHHHhccchhh-----------------------cc--cccce------ecccccccEEEEEeCCeeC
Q psy845 640 LARALLRKTKKK-----------------------KK--SGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 640 IARALLr~p~IL-----------------------~~--~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
||||+++||+++ .. .++|+ +++++.||+|+||++|+++
T Consensus 460 lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~ 528 (547)
T PRK10522 460 LLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLS 528 (547)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEE
Confidence 999999999976 01 36772 5567889999999999974
No 39
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.5e-54 Score=536.47 Aligned_cols=409 Identities=16% Similarity=0.203 Sum_probs=305.0
Q ss_pred HHHHHHHHHHHHHhhhcccccccc--ch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy845 185 VFQNMWSMLFAFLMICFVFPWFAL--PL---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLI 259 (677)
Q Consensus 185 ~~q~~~~~~f~~~~~~~~~~~f~~--~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~lal~~l~ 259 (677)
+-..+.+.+|++.+.+.. .+|+. ++ .+++.|.+.+++.. ..+..+....+.++++++++...-.+.+++.++
T Consensus 372 ir~~l~~~i~~k~l~l~~-~~~~~~~~G~i~n~ls~Dv~~i~~~~--~~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~~~ 448 (1495)
T PLN03232 372 LRSTLVAAIFHKSLRLTH-EARKNFASGKVTNMITTDANALQQIA--EQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSL 448 (1495)
T ss_pred HHHHHHHHHHHHHhcCCh-hhcCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 334455589999988765 66643 33 56677777777754 244455555555555444332211111111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 260 ITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAV 339 (677)
Q Consensus 260 i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (677)
+.++...+...+.++.++..+...+..++..+.+.|.++|+++||+|+.|+.+.+++++..++..+...+......+...
T Consensus 449 v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~ 528 (1495)
T PLN03232 449 ILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSF 528 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222233444555555555555666677889999999999999999999999999988877765554443332222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCC
Q psy845 340 RIDVLAVIAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLVPEGRGPITS 419 (677)
Q Consensus 340 ~l~~l~~l~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~~~e~~~~~~~ 419 (677)
.......++.++.+|.+.+.+|.+++|.+.+++++...+..|+..+...+..+.++..|.+|+.++++. +++...+.
T Consensus 529 ~~~~~~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~-~~~~~~~~-- 605 (1495)
T PLN03232 529 ILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLS-EERILAQN-- 605 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cccccccc--
Confidence 222222223335567777788999999999999999999999999999999999999999999999843 22211110
Q ss_pred ccccccccccCCCCCccEEEEeeeEEeCCC-CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEEC
Q psy845 420 EFGQVKVKLADWPRQGTIKFKNVSLRYRDN-WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKID 498 (677)
Q Consensus 420 ~~~~~~~~~~~~~~~g~I~fknVsFsY~~~-~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~Id 498 (677)
.+ ..+..+.|+++|++|+|+++ ++++|+|+||++++||++|||||||||||||+++|+|+|+|++|++.
T Consensus 606 -------~~-~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~-- 675 (1495)
T PLN03232 606 -------PP-LQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV-- 675 (1495)
T ss_pred -------CC-cCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE--
Confidence 00 01123579999999999853 35799999999999999999999999999999999999999998652
Q ss_pred CEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccc
Q psy845 499 DFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQD 578 (677)
Q Consensus 499 G~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd 578 (677)
.+|++|+||||+
T Consensus 676 --------------------------------------------------------------------~~~~~Iayv~Q~ 687 (1495)
T PLN03232 676 --------------------------------------------------------------------VIRGSVAYVPQV 687 (1495)
T ss_pred --------------------------------------------------------------------EecCcEEEEcCc
Confidence 246789999999
Q ss_pred ccccccchhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh-----
Q psy845 579 PVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK----- 651 (677)
Q Consensus 579 ~~LFsgTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL----- 651 (677)
|+||+|||||||.++.++++|++++|++.|+++++++.||+|+||.+ +|.+||||||||||||||+++||+++
T Consensus 688 p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEp 767 (1495)
T PLN03232 688 SWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDP 767 (1495)
T ss_pred cccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99999999999998888899999999999999999999999999999 89999999999999999999999976
Q ss_pred -------------------cccccc-e-----ecccccccEEEEEeCCeeC
Q psy845 652 -------------------KKSGVN-I-----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------------------~~~~~T-I-----LsTI~~aDrIlVLd~GrIV 677 (677)
..+++| | +++++.||+|++|++|+++
T Consensus 768 tSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~ 818 (1495)
T PLN03232 768 LSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIK 818 (1495)
T ss_pred ccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEE
Confidence 125677 3 4567889999999999974
No 40
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.9e-54 Score=534.54 Aligned_cols=406 Identities=15% Similarity=0.195 Sum_probs=306.7
Q ss_pred HHHHHHHHHHHhhhcccccccc--ch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy845 187 QNMWSMLFAFLMICFVFPWFAL--PL---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIIT 261 (677)
Q Consensus 187 q~~~~~~f~~~~~~~~~~~f~~--~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~lal~~l~i~ 261 (677)
..+.+.+|++.+.+.. .+++. ++ .++|.|.+.+.+.+. .+..+....+.++++++++...-.+.+++.++++
T Consensus 374 ~~L~~~i~~k~L~l~~-~~~~~~~~G~ivnl~s~Dv~~i~~~~~--~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~ 450 (1622)
T PLN03130 374 STLVAAVFRKSLRLTH-EGRKKFTSGKITNLMTTDAEALQQICQ--QLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLML 450 (1622)
T ss_pred HHHHHHHHHHHhcCCh-hhcCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455588999988755 67732 33 666777777777653 3455666666666655544433333333323333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 262 TLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRI 341 (677)
Q Consensus 262 ~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 341 (677)
++...+...+.++.++..+...+..++..+.+.|.++|+++||+|+.|+.+.+++++..++..+..........+.....
T Consensus 451 ~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~ 530 (1622)
T PLN03130 451 VLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFIL 530 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555667788999999999999999999999999998877765544333322222222111
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCcc
Q psy845 342 DVLAVIAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLVPEGRGPITSEF 421 (677)
Q Consensus 342 ~~l~~l~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~~~e~~~~~~~~~ 421 (677)
.....++.++.+|.+.+..|.+++|.+.+++++...+..|+..+...+..+.++..|.+|+.++++.. ++...+..
T Consensus 531 ~~~~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~-e~~~~~~~--- 606 (1622)
T PLN03130 531 NSIPVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAE-ERVLLPNP--- 606 (1622)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-ccccccCC---
Confidence 22222233445666777889999999999999999999999999999999999999999999998432 21111100
Q ss_pred ccccccccCCCCCccEEEEeeeEEeCCC-CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCc-cEEEECC
Q psy845 422 GQVKVKLADWPRQGTIKFKNVSLRYRDN-WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS-GQIKIDD 499 (677)
Q Consensus 422 ~~~~~~~~~~~~~g~I~fknVsFsY~~~-~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~-G~I~IdG 499 (677)
+. .+..+.|+++||+|+|+++ ++++|+|+||++++||++|||||||||||||+++|+|+++|++ |+|.+
T Consensus 607 ------~~-~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-- 677 (1622)
T PLN03130 607 ------PL-EPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-- 677 (1622)
T ss_pred ------cc-cCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE--
Confidence 00 0123579999999999753 3579999999999999999999999999999999999999999 88863
Q ss_pred EecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc
Q psy845 500 FDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP 579 (677)
Q Consensus 500 ~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~ 579 (677)
|++|+||||+|
T Consensus 678 ---------------------------------------------------------------------~~~Iayv~Q~p 688 (1622)
T PLN03130 678 ---------------------------------------------------------------------RGTVAYVPQVS 688 (1622)
T ss_pred ---------------------------------------------------------------------cCeEEEEcCcc
Confidence 34789999999
Q ss_pred cccccchhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh------
Q psy845 580 VLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK------ 651 (677)
Q Consensus 580 ~LFsgTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL------ 651 (677)
+||+|||||||.++.+.+++++++|++.|+++++++.||+|++|.+ +|.+||||||||||||||+++||+++
T Consensus 689 ~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEpt 768 (1622)
T PLN03130 689 WIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPL 768 (1622)
T ss_pred ccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 9999999999999888889999999999999999999999999999 89999999999999999999999976
Q ss_pred ------------------cccccc-e-----ecccccccEEEEEeCCeeC
Q psy845 652 ------------------KKSGVN-I-----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------------~~~~~T-I-----LsTI~~aDrIlVLd~GrIV 677 (677)
..+++| | ++.++.||+|++|++|+++
T Consensus 769 SALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~ 818 (1622)
T PLN03130 769 SALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIK 818 (1622)
T ss_pred cccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEE
Confidence 125677 3 4567889999999999974
No 41
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=9.8e-55 Score=472.63 Aligned_cols=432 Identities=19% Similarity=0.261 Sum_probs=335.6
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHhhhccccccccchhHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy845 174 SKVFRSVYLRSVFQNMWS----MLFAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFV 249 (677)
Q Consensus 174 ~~~~~~~~~~~~~q~~~~----~~f~~~~~~~~~~~f~~~~~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~ 249 (677)
+...++.++..++-++-. -.|+...+.....=-.-.+.-.-+|.+.+++...+..+.-++..-++.+... +++..
T Consensus 79 Ld~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~LrDL~qvR~Fltg~g~~A~fDaPW~P~yl~-v~fl~ 157 (580)
T COG4618 79 LDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPLRDLDQVRQFLTGTGLTAFFDAPWMPLYLA-VIFLF 157 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhcCCCccccchhhHHHHHHHHcCCCcchhcCCchHHHHHH-HHHHH
Confidence 345556676666665554 2344432111100001112333568899999888878888888889888776 56788
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q psy845 250 FPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFL 329 (677)
Q Consensus 250 ~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~ 329 (677)
+||+.+..+...++.+.+........++..++..+....-+.+...+..+.++|++.|......++|.+...++.+....
T Consensus 158 Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~ 237 (580)
T COG4618 158 HPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQER 237 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99998877777766666655555555554444445556667788889999999999999999999998888777655443
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy845 330 CSMAMRWLAVRIDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSK 407 (677)
Q Consensus 330 ~~~~~~~~~~~l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~ 407 (677)
.+-....++.....+-.. ..++..|.|++.+|++|+|.+.+..-.......|+...+..|.++..+..|.+|+.++++
T Consensus 238 asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~ 317 (580)
T COG4618 238 ASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLA 317 (580)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333332333222222222 234445667999999999988887777888999999999999999999999999999995
Q ss_pred hcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcC
Q psy845 408 KLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 408 ~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+. |+...... - +..+|.+.++++++.=|+.++++|+|+||++++||-+|||||||||||||.|+|.|.
T Consensus 318 ~~-p~~~~~m~--------L---P~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~ 385 (580)
T COG4618 318 EL-PAAAERMP--------L---PAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGI 385 (580)
T ss_pred hC-ccccCCCC--------C---CCCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcc
Confidence 43 32221111 0 113689999999997777777999999999999999999999999999999999999
Q ss_pred CCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHH
Q psy845 488 VELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET 567 (677)
Q Consensus 488 y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~ 567 (677)
+.|.+|+|++||-|++++ +.++
T Consensus 386 w~p~~G~VRLDga~l~qW----------------------------------------------------------d~e~ 407 (580)
T COG4618 386 WPPTSGSVRLDGADLRQW----------------------------------------------------------DREQ 407 (580)
T ss_pred cccCCCcEEecchhhhcC----------------------------------------------------------CHHH
Confidence 999999999999999999 8889
Q ss_pred HhhhcccccccccccccchhhccccC-CCCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHH
Q psy845 568 LRSRLSVIPQDPVLFNGTIRYNLDPF-GRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARAL 644 (677)
Q Consensus 568 LR~~I~~V~Qd~~LFsgTIrENI~~~-~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARAL 644 (677)
+=++|||.|||..||+|||+|||.-+ ++.++|.+.+|++.++.||.|.++|+||||.+ +|..|||||||||++|||+
T Consensus 408 lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAl 487 (580)
T COG4618 408 LGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARAL 487 (580)
T ss_pred hccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHH
Confidence 99999999999999999999999644 47888899999999999999999999999999 8999999999999999999
Q ss_pred hccchhh------------------------cccccc-e-----ecccccccEEEEEeCCee
Q psy845 645 LRKTKKK------------------------KKSGVN-I-----TRPVTSCDKVLVMDNGQA 676 (677)
Q Consensus 645 Lr~p~IL------------------------~~~~~T-I-----LsTI~~aDrIlVLd~GrI 676 (677)
+.||.++ +.+|.| | .+.+..+|+|+||++|++
T Consensus 488 YG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~ 549 (580)
T COG4618 488 YGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRI 549 (580)
T ss_pred cCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChH
Confidence 9999865 235666 2 456788999999999986
No 42
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=2e-50 Score=465.72 Aligned_cols=440 Identities=15% Similarity=0.113 Sum_probs=332.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc----chhHHhhhHHHHHHHhhhhHHHHHHHHH
Q psy845 161 LPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFAL----PLLIITTLYHLISKVFRSVYLRSVFQNM 236 (677)
Q Consensus 161 ~~~l~~~~~~~~~~~~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~~----~~~~~t~~~~~i~~v~~s~~l~~il~~~ 236 (677)
+++.++..+.+.+.+-+....++.+..++..+.|+|... ....+||. +..|+|.|.+.+.+.+. ..+..++..+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~-~~~~~~d~~~g~~~srlt~Dv~~i~~~~~-~~~~~l~~~~ 223 (659)
T TIGR00954 146 PPASFINSAIKYLLKELKLRFRVRLTRYLYSKYLSGFTF-YKVSNLDSRIQNPDQLLTQDVEKFCDSVV-ELYSNLTKPI 223 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCce-EEeccCCCCCCCccccHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 344455555555555555666666666666677777444 45577753 45899999999988764 4556788899
Q ss_pred HHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHH
Q psy845 237 WSMLFAFLMICF-VFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRR 315 (677)
Q Consensus 237 ~~ll~~~v~l~~-~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~ 315 (677)
+.+++..+.++. .+|.+++++++..++..++.+++.++.++..+..++..+++.+.++|.++|+++||+|+.|+.+.++
T Consensus 224 ~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~ 303 (659)
T TIGR00954 224 LDVILYSFKLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKET 303 (659)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHH
Confidence 988888877776 7888888888888899999999999999988888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHH-Hh----cCCCHHHHHH-HHHH---HHHHHHHH
Q psy845 316 FCEQYDENSTTLFLCSMAMRWLAVRIDVLAV---IAMA-IITGLTVA-FH----GSVSPALAGL-ALTY---ASHVTGLL 382 (677)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---l~~~-l~~g~~lv-~~----G~ls~g~l~~-~l~~---~~~l~~~l 382 (677)
+++..++..+...+......++....+++.. ..+. ++.|...+ .+ |.+|.|.... ++++ ...+..|+
T Consensus 304 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~ 383 (659)
T TIGR00954 304 VMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADAL 383 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988877666655555444444444432 1111 22223222 22 7888886544 5554 45668999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCC----CC-CCCccc--------cccc-cccCCCCCccEEEEeeeEEeCC
Q psy845 383 QFTVRVFVETELNFLAVERINNCSKKLVPEGR----GP-ITSEFG--------QVKV-KLADWPRQGTIKFKNVSLRYRD 448 (677)
Q Consensus 383 ~~l~~~~~~l~~~~~s~eRI~eil~~~~~e~~----~~-~~~~~~--------~~~~-~~~~~~~~g~I~fknVsFsY~~ 448 (677)
..+.....+++++.++.+|+.++++..++.+. .+ .++..+ +... ........+.|+++||+|+|++
T Consensus 384 ~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~ 463 (659)
T TIGR00954 384 GRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN 463 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC
Confidence 99999999999999999999999853211100 00 000000 0000 0000012357999999999975
Q ss_pred CCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCcccccccc
Q psy845 449 NWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV 528 (677)
Q Consensus 449 ~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~ 528 (677)
+ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+|+
T Consensus 464 ~-~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~----------------------------- 513 (659)
T TIGR00954 464 G-DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA----------------------------- 513 (659)
T ss_pred C-CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------------------------
Confidence 4 3699999999999999999999999999999999999999999987642
Q ss_pred ccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC--------CCChHH
Q psy845 529 GRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG--------RCHDTE 600 (677)
Q Consensus 529 ~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~--------~~sdee 600 (677)
|++++||||+|.+|++|++||+.+.. +.++++
T Consensus 514 ----------------------------------------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~ 553 (659)
T TIGR00954 514 ----------------------------------------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKD 553 (659)
T ss_pred ----------------------------------------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHH
Confidence 35688999999999999999997542 356788
Q ss_pred HHHHHHHccchhhHhhhhcccCCCC-CCCCCChHHHHHHHHHHHHhccchhh---------------------cccccce
Q psy845 601 LWDALEKSHLKSKVVTMRSKLDSDV-QGDQLSLGEKQLLCLARALLRKTKKK---------------------KKSGVNI 658 (677)
Q Consensus 601 I~~Al~~a~l~efI~~LP~GldT~v-~G~~LSGGQRQRIaIARALLr~p~IL---------------------~~~~~TI 658 (677)
++++++.+++++++.+ |.|+||.. .+.+||||||||++||||++++|+++ ...++|+
T Consensus 554 i~~~l~~~~l~~~~~~-~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tv 632 (659)
T TIGR00954 554 LEQILDNVQLTHILER-EGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITL 632 (659)
T ss_pred HHHHHHHcCCHHHHhh-cCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEE
Confidence 9999999999999988 99999988 77899999999999999999999976 1235662
Q ss_pred ------ecccccccEEEEEeC
Q psy845 659 ------TRPVTSCDKVLVMDN 673 (677)
Q Consensus 659 ------LsTI~~aDrIlVLd~ 673 (677)
++.++.||+|++|+.
T Consensus 633 I~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 633 FSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred EEEeCchHHHHhCCEEEEEeC
Confidence 456788999999984
No 43
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.3e-48 Score=482.21 Aligned_cols=407 Identities=15% Similarity=0.190 Sum_probs=295.2
Q ss_pred HHHHHHHHHHhhhcccccccc--ch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy845 188 NMWSMLFAFLMICFVFPWFAL--PL---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITT 262 (677)
Q Consensus 188 ~~~~~~f~~~~~~~~~~~f~~--~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~lal~~l~i~~ 262 (677)
.+.+.+|+|.+.+.. ..++. .+ ++++.|.+.+.+.. ..+..+....+.++++++++...-.+.+++.+.+++
T Consensus 392 ~L~~~iy~K~L~l~~-~~~~~~~~G~i~nl~s~D~~~i~~~~--~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~ 468 (1522)
T TIGR00957 392 AVMGAVYRKALVITN-SARKSSTVGEIVNLMSVDAQRFMDLA--TYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMV 468 (1522)
T ss_pred HHHHHHHHHHHhCCh-hhcCCCCHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 345599999999865 66632 34 44455555544433 244555556666565554443333334333344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 263 LYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRID 342 (677)
Q Consensus 263 l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 342 (677)
++..+...+.+..++.++...+...+..+.++|.++|+++||.++.|+.+.+++++..++..+........... .....
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~-~~~~~ 547 (1522)
T TIGR00957 469 LMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAV-GTFTW 547 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 44445555555555555555566677889999999999999999999999999988877665543332222111 11111
Q ss_pred HHHH-HHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCC
Q psy845 343 VLAV-IAMAIITGLTVAF--HGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLVPEGRGPITS 419 (677)
Q Consensus 343 ~l~~-l~~~l~~g~~lv~--~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~~~e~~~~~~~ 419 (677)
.... ++..+.++.+.+. .+.++++.+...+++...+..|+..+...+..++++..|.+|+.++++. +++++...+.
T Consensus 548 ~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~-~~~~~~~~~~ 626 (1522)
T TIGR00957 548 VCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSH-EELEPDSIER 626 (1522)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cccccccccc
Confidence 1111 1122233444444 3568888888888888889999999999999999999999999999943 2221111000
Q ss_pred ccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECC
Q psy845 420 EFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 499 (677)
Q Consensus 420 ~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG 499 (677)
........+.|+++|++|+|+++++++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||
T Consensus 627 -------~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g 699 (1522)
T TIGR00957 627 -------RTIKPGEGNSITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG 699 (1522)
T ss_pred -------cccCCCCCCcEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC
Confidence 0000011247999999999986545799999999999999999999999999999999999999999998875
Q ss_pred EecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc
Q psy845 500 FDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP 579 (677)
Q Consensus 500 ~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~ 579 (677)
+++||||+|
T Consensus 700 -----------------------------------------------------------------------~i~yv~Q~~ 708 (1522)
T TIGR00957 700 -----------------------------------------------------------------------SVAYVPQQA 708 (1522)
T ss_pred -----------------------------------------------------------------------EEEEEcCCc
Confidence 368999999
Q ss_pred cccccchhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh------
Q psy845 580 VLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK------ 651 (677)
Q Consensus 580 ~LFsgTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL------ 651 (677)
++|++||+|||.++.+.++++..++++.+++.+++..+|+|++|.+ +|.+||||||||++||||++++|+++
T Consensus 709 ~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~ 788 (1522)
T TIGR00957 709 WIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPL 788 (1522)
T ss_pred cccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 9999999999998766777888899999999999999999999999 89999999999999999999999876
Q ss_pred ----------------c----ccccc-e-----ecccccccEEEEEeCCeeC
Q psy845 652 ----------------K----KSGVN-I-----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----------------~----~~~~T-I-----LsTI~~aDrIlVLd~GrIV 677 (677)
. .+++| | ++.++.||+|++|++|+++
T Consensus 789 saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~ 840 (1522)
T TIGR00957 789 SAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKIS 840 (1522)
T ss_pred cccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEE
Confidence 0 13567 2 3456779999999999974
No 44
>KOG0054|consensus
Probab=100.00 E-value=6e-47 Score=454.32 Aligned_cols=436 Identities=16% Similarity=0.193 Sum_probs=323.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhccccccccc----hhHHhhhHHHHHHHhhhhHHHH
Q psy845 160 ALPLLIITTLYHLISKVFRSVYLRSVFQNMWS----MLFAFLMICFVFPWFALP----LLIITTLYHLISKVFRSVYLRS 231 (677)
Q Consensus 160 ~~~~l~~~~~~~~~~~~~~~~~~~~~~q~~~~----~~f~~~~~~~~~~~f~~~----~~~~t~~~~~i~~v~~s~~l~~ 231 (677)
.+.++++..+++-++...--+..+++|=++.+ ++|+....+....=.+.. ..+++.|++.+++.. ..+..
T Consensus 244 ~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~--~~~h~ 321 (1381)
T KOG0054|consen 244 LAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAA--CFLHL 321 (1381)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHH--HHHHH
Confidence 33344444444444444445556666666665 566665555432211212 256677777777755 34455
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHH
Q psy845 232 VFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQD 311 (677)
Q Consensus 232 il~~~~~ll~~~v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~ 311 (677)
+....+.++.++..+...-.+-+++.+.+.+++..++....+..++.++.....+.+.....+|.++||++||.|+.|+.
T Consensus 322 ~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~ 401 (1381)
T KOG0054|consen 322 LWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKP 401 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHH
Confidence 66666777766665555444555555556666666777777777776666666677778889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 312 FVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIAMAIITGLTV-AFHGSVSPALAGLALTYASHVTGLLQFTVRVFV 390 (677)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~g~~l-v~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~ 390 (677)
|.++.++..++..+...+.................++.++.++.+. ...+.+++..+...+++...+..|+..+...+.
T Consensus 402 F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~ 481 (1381)
T KOG0054|consen 402 FLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVIS 481 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988887665554443333322222222333333344445544 345577887888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCC-CCccccceeeEEeCCcEEEE
Q psy845 391 ETELNFLAVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDN-WPLVLANVSFRINHGENIGI 469 (677)
Q Consensus 391 ~l~~~~~s~eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~-~~~VLknISl~I~~GE~VAI 469 (677)
.+-++.+|.+|+.+++..++.+ +.... .....+.+..|+++|.+|+++++ .++.|+||||+|++||.+||
T Consensus 482 ~~vqa~VS~~Ri~~fl~~~e~~-~~~~~--------~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaV 552 (1381)
T KOG0054|consen 482 QLVQAKVSLKRLKEFLLSEELD-PDSVE--------RSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAV 552 (1381)
T ss_pred HHHHHHHHHHHHHHHhcCcccC-ccccc--------cCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEE
Confidence 9999999999999999432211 11110 00111234569999999999763 44599999999999999999
Q ss_pred EcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhc
Q psy845 470 VGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELS 549 (677)
Q Consensus 470 VGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~ 549 (677)
|||.|||||||+.+++|..+..+|++.++|
T Consensus 553 vG~vGsGKSSLL~AiLGEm~~~sG~v~v~g-------------------------------------------------- 582 (1381)
T KOG0054|consen 553 VGPVGSGKSSLLSAILGEMPKLSGSVAVNG-------------------------------------------------- 582 (1381)
T ss_pred ECCCCCCHHHHHHHHhcCcccccceEEEcC--------------------------------------------------
Confidence 999999999999999999999999999987
Q ss_pred cccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCC--CC
Q psy845 550 SGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QG 627 (677)
Q Consensus 550 ~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G 627 (677)
.++||||.|++|+|||||||.++.+.+++.-+++++.|+++..++.||.|-.|.+ +|
T Consensus 583 ---------------------siaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErG 641 (1381)
T KOG0054|consen 583 ---------------------SVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERG 641 (1381)
T ss_pred ---------------------eEEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCc
Confidence 2799999999999999999999888999999999999999999999999999999 99
Q ss_pred CCCChHHHHHHHHHHHHhccchhh------------------------cccccc-e--e---cccccccEEEEEeCCeeC
Q psy845 628 DQLSLGEKQLLCLARALLRKTKKK------------------------KKSGVN-I--T---RPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 628 ~~LSGGQRQRIaIARALLr~p~IL------------------------~~~~~T-I--L---sTI~~aDrIlVLd~GrIV 677 (677)
.||||||||||++|||+++|++|. ..++|| | + +-+++||+|+||+||+|+
T Consensus 642 inLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~ 721 (1381)
T KOG0054|consen 642 INLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIV 721 (1381)
T ss_pred cCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEe
Confidence 999999999999999999999875 246678 4 3 346789999999999984
No 45
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.3e-45 Score=456.91 Aligned_cols=426 Identities=15% Similarity=0.133 Sum_probs=309.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhccccccc-c-ch---hHHhhhHHHHHHHhhhhHHHHHH
Q psy845 163 LLIITTLYHLISKVFRSVYLRSVFQNMWS----MLFAFLMICFVFPWFA-L-PL---LIITTLYHLISKVFRSVYLRSVF 233 (677)
Q Consensus 163 ~l~~~~~~~~~~~~~~~~~~~~~~q~~~~----~~f~~~~~~~~~~~f~-~-~~---~~~t~~~~~i~~v~~s~~l~~il 233 (677)
.+++..+...++.....|..+.++.++.. .+|++.+.+.. ..++ . ++ .+++.|.+.+.+.+.. +..+.
T Consensus 127 ~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~-~~~~~~~~g~i~nl~s~Dv~~i~~~~~~--~~~~~ 203 (1490)
T TIGR01271 127 GLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLSS-RVLDKISTGQLVSLLSNNLNKFDEGLAL--AHFVW 203 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-HHhcCCCHHHHHHHHHHhHHHHHHHHHH--HHHHH
Confidence 33333444444445555566666666655 55999998864 4453 2 23 5555566666664432 23445
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHH
Q psy845 234 QNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFV 313 (677)
Q Consensus 234 ~~~~~ll~~~v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~ 313 (677)
...+.+++++++++...+|.+++.+.+++++..+..++.++..+.++.......+..+...|.++|+++||.++.|+.+.
T Consensus 204 ~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~ 283 (1490)
T TIGR01271 204 IAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAME 283 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHH
Confidence 66666677777777777777766666666677777777777777776666777788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy845 314 RRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLL-QFTVRVFVET 392 (677)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l-~~l~~~~~~l 392 (677)
+++++..++..+..........+..........++.++.++.+.+..| .+++.+.+++++...+..++ ..+...+..+
T Consensus 284 ~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~ 362 (1490)
T TIGR01271 284 KIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTW 362 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888877665544433222121111111112222333444444444 67787777788887777776 5788889999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCC-----------------------
Q psy845 393 ELNFLAVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDN----------------------- 449 (677)
Q Consensus 393 ~~~~~s~eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~----------------------- 449 (677)
.++.+|++||.++++. ++.+..+. . .....++++|++|+|+++
T Consensus 363 ~~a~~s~~RI~~fL~~-~e~~~~~~------------~-~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (1490)
T TIGR01271 363 YDSLGAITKIQDFLCK-EEYKTLEY------------N-LTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDG 428 (1490)
T ss_pred HHHHHHHHHHHHHhcC-cccccccc------------c-CCCCceEEecceEecCCcccccccccccccccccccccccc
Confidence 9999999999999943 21111000 0 012347777877777421
Q ss_pred ---------CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCC
Q psy845 450 ---------WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQD 520 (677)
Q Consensus 450 ---------~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~ 520 (677)
.+++|+|+||+|++||.++|+||+|||||||+++|+|+++|++|+|.+||
T Consensus 429 ~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g--------------------- 487 (1490)
T TIGR01271 429 LFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG--------------------- 487 (1490)
T ss_pred ccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC---------------------
Confidence 13589999999999999999999999999999999999999999999876
Q ss_pred ccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHH
Q psy845 521 PVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTE 600 (677)
Q Consensus 521 ~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdee 600 (677)
+++||||+|++|++||+|||.++...++++
T Consensus 488 --------------------------------------------------~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~ 517 (1490)
T TIGR01271 488 --------------------------------------------------RISFSPQTSWIMPGTIKDNIIFGLSYDEYR 517 (1490)
T ss_pred --------------------------------------------------EEEEEeCCCccCCccHHHHHHhccccchHH
Confidence 268999999999999999998765666667
Q ss_pred HHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh------------------------ccc
Q psy845 601 LWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK------------------------KKS 654 (677)
Q Consensus 601 I~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL------------------------~~~ 654 (677)
..++++.+++.+.++.+|+|.+|.+ +|.+||||||||++||||++++|+++ ..+
T Consensus 518 ~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~ 597 (1490)
T TIGR01271 518 YTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMS 597 (1490)
T ss_pred HHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc
Confidence 7888999999999999999999999 79999999999999999999999876 124
Q ss_pred ccc-e-----ecccccccEEEEEeCCeeC
Q psy845 655 GVN-I-----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 655 ~~T-I-----LsTI~~aDrIlVLd~GrIV 677 (677)
++| | ++.+..||+|++|++|+++
T Consensus 598 ~~tvilvtH~~~~~~~ad~ii~l~~g~i~ 626 (1490)
T TIGR01271 598 NKTRILVTSKLEHLKKADKILLLHEGVCY 626 (1490)
T ss_pred CCeEEEEeCChHHHHhCCEEEEEECCEEE
Confidence 567 2 2345679999999999974
No 46
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1e-44 Score=449.69 Aligned_cols=440 Identities=17% Similarity=0.194 Sum_probs=321.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhccccccc----cch---hHHhhhHHHHHHHhhhhHHHHH
Q psy845 164 LIITTLYHLISKVFRSVYLRSVFQNM----WSMLFAFLMICFVFPWFA----LPL---LIITTLYHLISKVFRSVYLRSV 232 (677)
Q Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~q~~----~~~~f~~~~~~~~~~~f~----~~~---~~~t~~~~~i~~v~~s~~l~~i 232 (677)
+++..+...++.....+...+++.++ .+.+|++.+.... .-+. +++ .++++|.+.+.+.+. .+..+
T Consensus 291 l~~~~~~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~-~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~--~~~~l 367 (1560)
T PTZ00243 291 LFLTQLIQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISS-KSLAQPDMNTGRIINMMSTDVERINSFMQ--YCMYL 367 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh-hhhCCCCCCHHHHHHHHHHhHHHHHHHHH--HHHHH
Confidence 33334444444444455555555544 4488999887654 2232 223 566777777777653 34567
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHH
Q psy845 233 FQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDF 312 (677)
Q Consensus 233 l~~~~~ll~~~v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~ 312 (677)
....+.++++++++.....|.+++.++++++...++.+..++....++.......+..+...|.++|+++||.++.|+.+
T Consensus 368 ~~~Pl~li~~~~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f 447 (1560)
T PTZ00243 368 WSSPMVLLLSILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCF 447 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888777788777777676677777777777776666666666777888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 313 VRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVET 392 (677)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l 392 (677)
.+++++..++..+..........+..........+..++.++.+.+..|.++++.+.++++++..+..|+..+...+..+
T Consensus 448 ~~ri~~~R~~El~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~ 527 (1560)
T PTZ00243 448 VANIEDKRARELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTV 527 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988776655443333332222222222222333455666677889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCC----CC-CC------CCccccc----c----------c---------------------
Q psy845 393 ELNFLAVERINNCSKKLVPEG----RG-PI------TSEFGQV----K----------V--------------------- 426 (677)
Q Consensus 393 ~~~~~s~eRI~eil~~~~~e~----~~-~~------~~~~~~~----~----------~--------------------- 426 (677)
.++..|++||.++++..+... +. +. .....+. . +
T Consensus 528 ~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (1560)
T PTZ00243 528 LQFLVSIKRISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCC 607 (1560)
T ss_pred HHHHHHHHHHHHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccc
Confidence 999999999999995322100 00 00 0000000 0 0
Q ss_pred ---cccCCCCCccEEEEeeeEEeCC--------------------------------------CCCccccceeeEEeCCc
Q psy845 427 ---KLADWPRQGTIKFKNVSLRYRD--------------------------------------NWPLVLANVSFRINHGE 465 (677)
Q Consensus 427 ---~~~~~~~~g~I~fknVsFsY~~--------------------------------------~~~~VLknISl~I~~GE 465 (677)
.+......+.+.++|++|+++. +++++|+|+||++++||
T Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~ 687 (1560)
T PTZ00243 608 EQCRPTKRHPSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGK 687 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCC
Confidence 0000011245778888776431 12458999999999999
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHh
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRL 545 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~ 545 (677)
+++|+||||||||||+++|+|+++|++|+|.++
T Consensus 688 ~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~----------------------------------------------- 720 (1560)
T PTZ00243 688 LTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE----------------------------------------------- 720 (1560)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-----------------------------------------------
Confidence 999999999999999999999999999998642
Q ss_pred hhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCC
Q psy845 546 VELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV 625 (677)
Q Consensus 546 ~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v 625 (677)
++|+||||+|.+|++|++|||.++...++++..++++.+++++.++.+|+|++|.+
T Consensus 721 ------------------------~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i 776 (1560)
T PTZ00243 721 ------------------------RSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEI 776 (1560)
T ss_pred ------------------------CeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHh
Confidence 35899999999999999999987665566678889999999999999999999988
Q ss_pred --CCCCCChHHHHHHHHHHHHhccchhh------------------------cccccc-e-----ecccccccEEEEEeC
Q psy845 626 --QGDQLSLGEKQLLCLARALLRKTKKK------------------------KKSGVN-I-----TRPVTSCDKVLVMDN 673 (677)
Q Consensus 626 --~G~~LSGGQRQRIaIARALLr~p~IL------------------------~~~~~T-I-----LsTI~~aDrIlVLd~ 673 (677)
+|.+||||||||++||||++++|+++ ..+++| | ++.+..||+|++|++
T Consensus 777 ~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~ 856 (1560)
T PTZ00243 777 GEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGD 856 (1560)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEEC
Confidence 79999999999999999999999876 124566 2 334567999999999
Q ss_pred CeeC
Q psy845 674 GQAL 677 (677)
Q Consensus 674 GrIV 677 (677)
|+++
T Consensus 857 G~i~ 860 (1560)
T PTZ00243 857 GRVE 860 (1560)
T ss_pred CEEE
Confidence 9973
No 47
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.1e-40 Score=347.94 Aligned_cols=184 Identities=38% Similarity=0.682 Sum_probs=167.3
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
|.|+++|++++|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++ ++|+|.+||.++.++
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~--------- 70 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSV--------- 70 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhC---------
Confidence 4699999999997554579999999999999999999999999999999999998 789999999999877
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG 594 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~ 594 (677)
+..++|++++||||++.+|++|++||+++++
T Consensus 71 -------------------------------------------------~~~~lr~~i~~v~q~~~lf~~tv~~nl~~~~ 101 (275)
T cd03289 71 -------------------------------------------------PLQKWRKAFGVIPQKVFIFSGTFRKNLDPYG 101 (275)
T ss_pred -------------------------------------------------CHHHHhhhEEEECCCcccchhhHHHHhhhcc
Confidence 7788999999999999999999999998766
Q ss_pred CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh---------------------
Q psy845 595 RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK--------------------- 651 (677)
Q Consensus 595 ~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL--------------------- 651 (677)
..++++++++++.+++.+++.++|+++||.+ +|.+||||||||++||||++++|+++
T Consensus 102 ~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l 181 (275)
T cd03289 102 KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTL 181 (275)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHH
Confidence 6788999999999999999999999999999 89999999999999999999999976
Q ss_pred --cccccce------ecccccccEEEEEeCCeeC
Q psy845 652 --KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
...++|| +++++.||||+||++|+++
T Consensus 182 ~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~ 215 (275)
T cd03289 182 KQAFADCTVILSEHRIEAMLECQRFLVIEENKVR 215 (275)
T ss_pred HHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEe
Confidence 1245673 4466789999999999985
No 48
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-37 Score=331.44 Aligned_cols=185 Identities=23% Similarity=0.345 Sum_probs=150.9
Q ss_pred CCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCccEEEECCEeccc
Q psy845 430 DWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE-----LSSGQIKIDDFDIAS 504 (677)
Q Consensus 430 ~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~-----p~~G~I~IdG~dI~~ 504 (677)
+|+..+.|+++|++++|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+++++
T Consensus 74 ~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 74 DFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153 (329)
T ss_pred CCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 466678899999999997544579999999999999999999999999999999999997 579999999999864
Q ss_pred ccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc
Q psy845 505 VELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG 584 (677)
Q Consensus 505 l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg 584 (677)
.+ .+...+|+.++||||+|.+|++
T Consensus 154 ~~--------------------------------------------------------~~~~~lr~~i~~v~q~~~~~~~ 177 (329)
T PRK14257 154 KK--------------------------------------------------------ISSLELRTRIGMVFQKPTPFEM 177 (329)
T ss_pred cc--------------------------------------------------------cchHhhhccEEEEecCCccCCC
Confidence 20 0556789999999999999999
Q ss_pred chhhccccCC---CCChHH-----HHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh---
Q psy845 585 TIRYNLDPFG---RCHDTE-----LWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK--- 651 (677)
Q Consensus 585 TIrENI~~~~---~~sdee-----I~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL--- 651 (677)
|++||++++. ..++++ ..++++.+++++. +++.+ +|.+||||||||+|||||++++|+++
T Consensus 178 ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-------l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLD 250 (329)
T PRK14257 178 SIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDE-------VKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMD 250 (329)
T ss_pred cHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcch-------hhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 9999998532 234444 3556777776543 33444 79999999999999999999999977
Q ss_pred --------------------cccccce------eccccc-ccEEEEEeCCeeC
Q psy845 652 --------------------KKSGVNI------TRPVTS-CDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------------------~~~~~TI------LsTI~~-aDrIlVLd~GrIV 677 (677)
..+++|| ++++.+ ||||+||++|+++
T Consensus 251 EPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~ 303 (329)
T PRK14257 251 EPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIE 303 (329)
T ss_pred CCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 1345673 345666 9999999999984
No 49
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=8.4e-37 Score=305.82 Aligned_cols=185 Identities=59% Similarity=0.939 Sum_probs=162.9
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
|.++++|++++|++...++++|+||++++||.+||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~--------- 71 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKI--------- 71 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhC---------
Confidence 46899999999975444699999999999999999999999999999999999999999999999988766
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG 594 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~ 594 (677)
+...+|++++|++|++.+|++|++||+.+..
T Consensus 72 -------------------------------------------------~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~ 102 (221)
T cd03244 72 -------------------------------------------------GLHDLRSRISIIPQDPVLFSGTIRSNLDPFG 102 (221)
T ss_pred -------------------------------------------------CHHHHhhhEEEECCCCccccchHHHHhCcCC
Confidence 5667788999999999999999999998765
Q ss_pred CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh---------------------
Q psy845 595 RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK--------------------- 651 (677)
Q Consensus 595 ~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL--------------------- 651 (677)
..+.+++.++++..++.+++.++|.|+++.. .+.+||||||||++||||++++|+++
T Consensus 103 ~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l 182 (221)
T cd03244 103 EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTI 182 (221)
T ss_pred CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 6677889999999999999999999999987 68899999999999999999999976
Q ss_pred --cccccce------ecccccccEEEEEeCCeeC
Q psy845 652 --KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
..++.|| ...+..||+|++|++|+++
T Consensus 183 ~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~ 216 (221)
T cd03244 183 REAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVV 216 (221)
T ss_pred HHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEE
Confidence 1134552 2235679999999999974
No 50
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=5.5e-37 Score=343.36 Aligned_cols=232 Identities=22% Similarity=0.380 Sum_probs=181.7
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHH-hhhhc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET-LRSRL 514 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~-~~~~i 514 (677)
-|+++|++++|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++...+... .++++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 3899999999964 36999999999999999999999999999999999999999999999999986654333 36789
Q ss_pred ccccCCccccc---------------------------------------------------------------------
Q psy845 515 SVIPQDPVLFN--------------------------------------------------------------------- 525 (677)
Q Consensus 515 ~~v~q~~~lf~--------------------------------------------------------------------- 525 (677)
+|+||++.+++
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 161 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESK 161 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999853221
Q ss_pred --------------------------------------------------------------------------------
Q psy845 526 -------------------------------------------------------------------------------- 525 (677)
Q Consensus 526 -------------------------------------------------------------------------------- 525 (677)
T Consensus 162 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 241 (501)
T PRK10762 162 VIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTEDSLIEMMVGRK 241 (501)
T ss_pred EEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCHHHHHHHhcCCC
Confidence
Q ss_pred ----------------------------------------cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhH
Q psy845 526 ----------------------------------------GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL 565 (677)
Q Consensus 526 ----------------------------------------~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~ 565 (677)
+.+|.||||||||+++|.|+.+|++|+|+++|.+++..+.
T Consensus 242 ~~~~~~~~~~~~~~~~l~~~~l~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~ 321 (501)
T PRK10762 242 LEDQYPRLDKAPGEVRLKVDNLSGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSP 321 (501)
T ss_pred ccccccccccCCCCcEEEEeCcccCCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCH
Confidence 7789999999999999999999999999999999876543
Q ss_pred -HHHhhhcccccccc---ccc-ccchhhccccCC-----C----CC----hHHHHHHHHHccchhhHhhhhcccCCCCCC
Q psy845 566 -ETLRSRLSVIPQDP---VLF-NGTIRYNLDPFG-----R----CH----DTELWDALEKSHLKSKVVTMRSKLDSDVQG 627 (677)
Q Consensus 566 -~~LR~~I~~V~Qd~---~LF-sgTIrENI~~~~-----~----~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G 627 (677)
+.+|++++||||++ .+| +.|++||+.+.. . .+ ++++.++++..++.+ +..+. ..
T Consensus 322 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~--~~ 393 (501)
T PRK10762 322 QDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKT------PSMEQ--AI 393 (501)
T ss_pred HHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCC------CCccC--ch
Confidence 45778899999997 354 579999996421 0 11 122344444444310 01122 46
Q ss_pred CCCChHHHHHHHHHHHHhccchhh------------------------cccccce---ecc---c-ccccEEEEEeCCee
Q psy845 628 DQLSLGEKQLLCLARALLRKTKKK------------------------KKSGVNI---TRP---V-TSCDKVLVMDNGQA 676 (677)
Q Consensus 628 ~~LSGGQRQRIaIARALLr~p~IL------------------------~~~~~TI---LsT---I-~~aDrIlVLd~GrI 676 (677)
.+||||||||++||||++++|+++ ..+++|+ .|. + +.||||++|++|++
T Consensus 394 ~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i 473 (501)
T PRK10762 394 GLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRI 473 (501)
T ss_pred hhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEE
Confidence 799999999999999999999976 1235562 332 2 34999999999997
Q ss_pred C
Q psy845 677 L 677 (677)
Q Consensus 677 V 677 (677)
+
T Consensus 474 ~ 474 (501)
T PRK10762 474 S 474 (501)
T ss_pred E
Confidence 4
No 51
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-33 Score=300.88 Aligned_cols=379 Identities=21% Similarity=0.256 Sum_probs=254.8
Q ss_pred hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Q psy845 211 LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIF 290 (677)
Q Consensus 211 ~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~ 290 (677)
+.+|+|++.|+ +....++.+.+..+..+++...+++.||.+.++.++.+.+..+.....+.+..+..+..++...++.
T Consensus 109 a~L~~Dvr~IS--f~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq 186 (546)
T COG4615 109 AGLTSDVRNIS--FAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQ 186 (546)
T ss_pred hhhccccccee--ehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 55677777777 5667889999999999999999999999876666655555555444444444444444445557788
Q ss_pred HHHHHHHchHHHHHHhccHHH--HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--HHHHh-c
Q psy845 291 SNVSSTVSGLHIIHVFHKEQD--FVRRFCEQYDENSTTLFLCS----MAMRWLAVRIDVLAVIAMAIITGL--TVAFH-G 361 (677)
Q Consensus 291 s~~~E~l~Gi~tIkaf~~e~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~l~~l~~~l~~g~--~lv~~-G 361 (677)
++.+..++|.++.+..+.-++ ..+.+....+...+...+.. ....|.+ +.+...+|. |+..+ +
T Consensus 187 ~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~~~~~~n~f~~la~~~~n--------i~l~~lIGlvf~lal~~~ 258 (546)
T COG4615 187 NDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSN--------IMLLGLIGLVFWLALSLG 258 (546)
T ss_pred HHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHhhhhhhhHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhc
Confidence 999999999999998764433 22333222222222110000 1111211 111111221 12211 1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEe
Q psy845 362 SVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKN 441 (677)
Q Consensus 362 ~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fkn 441 (677)
--+...+..+......+-+|+.+.+..+..+..+.+|.+||.++..+++++ ..+. +...|.-.++|++|
T Consensus 259 w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a-~~~~----------~q~~p~~~~lelrn 327 (546)
T COG4615 259 WASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKA-DFPR----------PQAFPDWKTLELRN 327 (546)
T ss_pred cchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccc-cCCC----------CCcCCcccceeeee
Confidence 112222333444445667899999999999999999999999886322111 1111 11122234799999
Q ss_pred eeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCc
Q psy845 442 VSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP 521 (677)
Q Consensus 442 VsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~ 521 (677)
|.|+|++.. .-+..||++|++||.|-|+|.+||||||++++|.|+|.|++|+|++||.++..-
T Consensus 328 vrfay~~~~-FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e---------------- 390 (546)
T COG4615 328 VRFAYQDNA-FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAE---------------- 390 (546)
T ss_pred eeeccCccc-ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCC----------------
Confidence 999998763 568999999999999999999999999999999999999999999999998665
Q ss_pred cccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHH
Q psy845 522 VLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTEL 601 (677)
Q Consensus 522 ~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI 601 (677)
+++++|+.++-|+-|.+||+.++. +-+.++.+.+
T Consensus 391 ------------------------------------------~ledYR~LfSavFsDyhLF~~ll~----~e~~as~q~i 424 (546)
T COG4615 391 ------------------------------------------QLEDYRKLFSAVFSDYHLFDQLLG----PEGKASPQLI 424 (546)
T ss_pred ------------------------------------------CHHHHHHHHHHHhhhHhhhHhhhC----CccCCChHHH
Confidence 888999999999999999987751 1112566656
Q ss_pred HHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------------------ccccc
Q psy845 602 WDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------------------------KKSGV 656 (677)
Q Consensus 602 ~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------------------------~~~~~ 656 (677)
..-++...+..... +.+| ...-..||-|||.|+|+--|++-+.+|+ +..||
T Consensus 425 ~~~LqrLel~~kts-l~d~---~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGK 500 (546)
T COG4615 425 EKWLQRLELAHKTS-LNDG---RFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGK 500 (546)
T ss_pred HHHHHHHHHhhhhc-ccCC---cccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCC
Confidence 55555444433221 1111 1123589999999999999999988876 34789
Q ss_pred ce---ec---ccccccEEEEEeCCeeC
Q psy845 657 NI---TR---PVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 657 TI---Ls---TI~~aDrIlVLd~GrIV 677 (677)
|| .| -..+|||++.|++|+++
T Consensus 501 TI~aIsHDd~YF~~ADrll~~~~G~~~ 527 (546)
T COG4615 501 TIFAISHDDHYFIHADRLLEMRNGQLS 527 (546)
T ss_pred eEEEEecCchhhhhHHHHHHHhcCcee
Confidence 95 22 24569999999999985
No 52
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=4e-36 Score=309.15 Aligned_cols=187 Identities=44% Similarity=0.762 Sum_probs=163.4
Q ss_pred CCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhh
Q psy845 433 RQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS 512 (677)
Q Consensus 433 ~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~ 512 (677)
..|.|+++|++++|++....+++|+||++++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~------- 88 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKL------- 88 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhC-------
Confidence 4678999999999976434699999999999999999999999999999999999999999999999988776
Q ss_pred hcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcccc
Q psy845 513 RLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDP 592 (677)
Q Consensus 513 ~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~ 592 (677)
+...+|+.++|++|++.+|++|++||+.+
T Consensus 89 ---------------------------------------------------~~~~~~~~i~~v~q~~~l~~~tv~~nl~~ 117 (257)
T cd03288 89 ---------------------------------------------------PLHTLRSRLSIILQDPILFSGSIRFNLDP 117 (257)
T ss_pred ---------------------------------------------------CHHHHhhhEEEECCCCcccccHHHHhcCc
Confidence 66678899999999999999999999976
Q ss_pred CCCCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh-------------------
Q psy845 593 FGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK------------------- 651 (677)
Q Consensus 593 ~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL------------------- 651 (677)
.....+++++++++..++.+.+..+|.|+++.+ .+.+||||||||++||||++++|+++
T Consensus 118 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~ 197 (257)
T cd03288 118 ECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQK 197 (257)
T ss_pred CCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 433445678889999999999999999999988 68899999999999999999999976
Q ss_pred ----cccccce------ecccccccEEEEEeCCeeC
Q psy845 652 ----KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
..+++|| ++.+..||||++|++|+++
T Consensus 198 ~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~ 233 (257)
T cd03288 198 VVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILV 233 (257)
T ss_pred HHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEE
Confidence 1235562 2345569999999999984
No 53
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-36 Score=340.30 Aligned_cols=232 Identities=22% Similarity=0.363 Sum_probs=181.2
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHH-hhhhc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET-LRSRL 514 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~-~~~~i 514 (677)
-++++|++++|++. ++++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+..+ .++++
T Consensus 5 ~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 5 YISMAGIGKSFGPV--HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred eEEEeeeEEEcCCe--EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 48999999999753 5999999999999999999999999999999999999999999999999998766544 35679
Q ss_pred ccccCCcccc-------------------------c--------------------------------------------
Q psy845 515 SVIPQDPVLF-------------------------N-------------------------------------------- 525 (677)
Q Consensus 515 ~~v~q~~~lf-------------------------~-------------------------------------------- 525 (677)
+|+||++.++ +
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~ 162 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLML 162 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhc
Confidence 9999985310 0
Q ss_pred --------------------------------------------------------------------------------
Q psy845 526 -------------------------------------------------------------------------------- 525 (677)
Q Consensus 526 -------------------------------------------------------------------------------- 525 (677)
T Consensus 163 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~ 242 (510)
T PRK09700 163 DAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSNDDIVRLMV 242 (510)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCHHHHHHHhc
Confidence
Q ss_pred --------------------------------------------------cccccCCCCCchhHHHHHHhhhhccccccc
Q psy845 526 --------------------------------------------------GIVGRTGAGKSSLLVALFRLVELSSGQIKI 555 (677)
Q Consensus 526 --------------------------------------------------~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~ 555 (677)
+.+|.||||||||+++|.|+.+|++|+|++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~ 322 (510)
T PRK09700 243 GRELQNRFNAMKENVSNLAHETVFEVRNVTSRDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRL 322 (510)
T ss_pred CCCccccccccccccccCCCCcEEEEeCccccCCCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEE
Confidence 777899999999999999999999999999
Q ss_pred cccchhhhh-HHHHhhhcccccccc---cccc-cchhhccccCCCC------------Ch----HHHHHHHHHccchhhH
Q psy845 556 DDFDIASVE-LETLRSRLSVIPQDP---VLFN-GTIRYNLDPFGRC------------HD----TELWDALEKSHLKSKV 614 (677)
Q Consensus 556 ~~~~~~~~~-~~~LR~~I~~V~Qd~---~LFs-gTIrENI~~~~~~------------sd----eeI~~Al~~a~l~efI 614 (677)
+|.++...+ .+.+|++++||||++ .+|. .|++||+.+.... +. +++.++++..++..
T Consensus 323 ~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-- 400 (510)
T PRK09700 323 NGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKC-- 400 (510)
T ss_pred CCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCC--
Confidence 999886543 356788999999984 5664 5999999643110 11 12334444444320
Q ss_pred hhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------------cccccce---eccc----c
Q psy845 615 VTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------------KKSGVNI---TRPV----T 663 (677)
Q Consensus 615 ~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------------~~~~~TI---LsTI----~ 663 (677)
+..+. ...+||||||||++||||++++|+++ ..++.|| .|.. +
T Consensus 401 ----~~~~~--~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~ 474 (510)
T PRK09700 401 ----HSVNQ--NITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIIT 474 (510)
T ss_pred ----CCccC--ccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHh
Confidence 11222 45789999999999999999999976 1235663 3322 3
Q ss_pred cccEEEEEeCCeeC
Q psy845 664 SCDKVLVMDNGQAL 677 (677)
Q Consensus 664 ~aDrIlVLd~GrIV 677 (677)
.||||++|++|+++
T Consensus 475 ~~d~i~~l~~G~i~ 488 (510)
T PRK09700 475 VCDRIAVFCEGRLT 488 (510)
T ss_pred hCCEEEEEECCEEE
Confidence 49999999999974
No 54
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-36 Score=315.19 Aligned_cols=177 Identities=34% Similarity=0.437 Sum_probs=147.2
Q ss_pred EEEEeeeEEeCCC---CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 437 IKFKNVSLRYRDN---WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 437 I~fknVsFsY~~~---~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
|+++|||+.|+.+ ...+|+||||+|++||+.||||+||||||||++++.++-+|++|+|.+||.|+..++..
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~----- 76 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEA----- 76 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChH-----
Confidence 7899999999862 24689999999999999999999999999999999999999999999999999888321
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhcccc
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDP 592 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~ 592 (677)
++..+|++||+|+|++.|++ .|+.||+++
T Consensus 77 --------------------------------------------------~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~ 106 (339)
T COG1135 77 --------------------------------------------------ELRQLRQKIGMIFQHFNLLSSRTVFENVAF 106 (339)
T ss_pred --------------------------------------------------HHHHHHhhccEEeccccccccchHHhhhhh
Confidence 78889999999999999996 899999974
Q ss_pred C---CCCChHH----HHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc-------------
Q psy845 593 F---GRCHDTE----LWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK------------- 652 (677)
Q Consensus 593 ~---~~~sdee----I~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~------------- 652 (677)
- ...+.+| +.+.++.+|+.|+..+ ..++||||||||++|||||..+|+++.
T Consensus 107 PLeiag~~k~ei~~RV~elLelVgL~dk~~~---------yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT 177 (339)
T COG1135 107 PLELAGVPKAEIKQRVAELLELVGLSDKADR---------YPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETT 177 (339)
T ss_pred hHhhcCCCHHHHHHHHHHHHHHcCChhhhcc---------CchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHH
Confidence 2 1233443 5667888888877655 357999999999999999999999882
Q ss_pred ------------ccccce---ecc---cc-cccEEEEEeCCeeC
Q psy845 653 ------------KSGVNI---TRP---VT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 653 ------------~~~~TI---LsT---I~-~aDrIlVLd~GrIV 677 (677)
.-|.|| .|. ++ -|||+.||++|+++
T Consensus 178 ~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lv 221 (339)
T COG1135 178 QSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLV 221 (339)
T ss_pred HHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEE
Confidence 123442 232 33 39999999999985
No 55
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-36 Score=336.44 Aligned_cols=232 Identities=24% Similarity=0.353 Sum_probs=181.1
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccH-HHhhhhc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL-ETLRSRL 514 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~-~~~~~~i 514 (677)
-++++|++++|++. ++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. +..++++
T Consensus 4 ~l~~~~l~~~~~~~--~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 4 YLSFDGIGKTFPGV--KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred eEEEeeeEEEECCE--EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 48999999999753 59999999999999999999999999999999999999999999999999865433 3467889
Q ss_pred ccccCCccccc---------------------------------------------------------------------
Q psy845 515 SVIPQDPVLFN--------------------------------------------------------------------- 525 (677)
Q Consensus 515 ~~v~q~~~lf~--------------------------------------------------------------------- 525 (677)
||+||++.+++
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~l 161 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARV 161 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCE
Confidence 99999864321
Q ss_pred --------------------------------------------------------------------------------
Q psy845 526 -------------------------------------------------------------------------------- 525 (677)
Q Consensus 526 -------------------------------------------------------------------------------- 525 (677)
T Consensus 162 llLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 241 (501)
T PRK11288 162 IAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQVDRDQLVQAMVGRE 241 (501)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCccccCCHHHHHHHhcCCC
Confidence
Q ss_pred -----------------------------------------cccccCCCCCchhHHHHHHhhhhccccccccccchhhh-
Q psy845 526 -----------------------------------------GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV- 563 (677)
Q Consensus 526 -----------------------------------------~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~- 563 (677)
+.+|.||||||||+++|.|+.+|++|+|+++|.++...
T Consensus 242 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~ 321 (501)
T PRK11288 242 IGDIYGYRPRPLGEVRLRLDGLKGPGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRS 321 (501)
T ss_pred ccccccccccCCCCcEEEEeccccCCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCC
Confidence 55689999999999999999999999999999988654
Q ss_pred hHHHHhhhccccccccc---cc-ccchhhccccCCC-C--------Ch----HHHHHHHHHccchhhHhhhhcccCCCCC
Q psy845 564 ELETLRSRLSVIPQDPV---LF-NGTIRYNLDPFGR-C--------HD----TELWDALEKSHLKSKVVTMRSKLDSDVQ 626 (677)
Q Consensus 564 ~~~~LR~~I~~V~Qd~~---LF-sgTIrENI~~~~~-~--------sd----eeI~~Al~~a~l~efI~~LP~GldT~v~ 626 (677)
+.+..|++++|+||++. +| +.|+.||+..... . .. +++.++++..++.+ +-.++ .
T Consensus 322 ~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~--~ 393 (501)
T PRK11288 322 PRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKT------PSREQ--L 393 (501)
T ss_pred HHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCccc------CCccC--c
Confidence 34567889999999973 55 5899999864311 0 11 12333444443310 11122 4
Q ss_pred CCCCChHHHHHHHHHHHHhccchhh------------------------cccccce---ecc---c-ccccEEEEEeCCe
Q psy845 627 GDQLSLGEKQLLCLARALLRKTKKK------------------------KKSGVNI---TRP---V-TSCDKVLVMDNGQ 675 (677)
Q Consensus 627 G~~LSGGQRQRIaIARALLr~p~IL------------------------~~~~~TI---LsT---I-~~aDrIlVLd~Gr 675 (677)
..+||||||||++||||++.+|+++ ...+.|| .|. + +-||||++|++|+
T Consensus 394 ~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~ 473 (501)
T PRK11288 394 IMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGR 473 (501)
T ss_pred cccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCE
Confidence 6799999999999999999999976 1235563 222 2 3499999999999
Q ss_pred eC
Q psy845 676 AL 677 (677)
Q Consensus 676 IV 677 (677)
++
T Consensus 474 i~ 475 (501)
T PRK11288 474 IA 475 (501)
T ss_pred EE
Confidence 74
No 56
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2.8e-36 Score=335.59 Aligned_cols=233 Identities=33% Similarity=0.481 Sum_probs=189.1
Q ss_pred cEEEEeeeEEeCCCCC--ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCC----ccEEEECCEecccccHHH
Q psy845 436 TIKFKNVSLRYRDNWP--LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS----SGQIKIDDFDIASVELET 509 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~--~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~----~G~I~IdG~dI~~l~~~~ 509 (677)
-++++|++..|..... .+++||||++++||.+||||+|||||||+++.|.|+.++. +|+|.+||.|+..++.++
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5899999999975432 5999999999999999999999999999999999999988 899999999998887654
Q ss_pred h----hhhcccccCCcc-ccc-----------------------------------------------------------
Q psy845 510 L----RSRLSVIPQDPV-LFN----------------------------------------------------------- 525 (677)
Q Consensus 510 ~----~~~i~~v~q~~~-lf~----------------------------------------------------------- 525 (677)
. .++|++|||+|. .+|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~ 164 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVM 164 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHH
Confidence 3 588999999987 455
Q ss_pred --------------------------------------------------------------------------------
Q psy845 526 -------------------------------------------------------------------------------- 525 (677)
Q Consensus 526 -------------------------------------------------------------------------------- 525 (677)
T Consensus 165 iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~ 244 (539)
T COG1123 165 IAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILS 244 (539)
T ss_pred HHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHh
Confidence
Q ss_pred ----------------------------------------------------------------------------cccc
Q psy845 526 ----------------------------------------------------------------------------GIVG 529 (677)
Q Consensus 526 ----------------------------------------------------------------------------~~~~ 529 (677)
|.||
T Consensus 245 ~p~hpYT~~Ll~a~p~~~~~~~~~~~~~~~~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVG 324 (539)
T COG1123 245 NPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVG 324 (539)
T ss_pred ccCCcccHHHHhhCCCcccccccccccccccccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEEC
Confidence 7789
Q ss_pred cCCCCCchhHHHHHHhhhhccccccccccc--hhhhhHHHHhhhccccccccccc---ccchhhccc-c---CCCC----
Q psy845 530 RTGAGKSSLLVALFRLVELSSGQIKIDDFD--IASVELETLRSRLSVIPQDPVLF---NGTIRYNLD-P---FGRC---- 596 (677)
Q Consensus 530 ~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~--~~~~~~~~LR~~I~~V~Qd~~LF---sgTIrENI~-~---~~~~---- 596 (677)
++|||||||+++|+||.+|++|+|.++|.| .+.-+....|+++-+|+|||+=. ..||+++|. + .+..
T Consensus 325 eSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~ 404 (539)
T COG1123 325 ESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAE 404 (539)
T ss_pred CCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHH
Confidence 999999999999999999999999999988 23334667889999999999864 579999984 1 1111
Q ss_pred ChHHHHHHHHHccchh-hHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc-----------------------
Q psy845 597 HDTELWDALEKSHLKS-KVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK----------------------- 652 (677)
Q Consensus 597 sdeeI~~Al~~a~l~e-fI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~----------------------- 652 (677)
..+.+.+.++.+++.+ +..+ ...+||||||||+||||||..+|+++.
T Consensus 405 ~~~rv~~ll~~VgL~~~~l~r---------yP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~l 475 (539)
T COG1123 405 RRARVAELLELVGLPPEFLDR---------YPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDL 475 (539)
T ss_pred HHHHHHHHHHHcCCCHHHHhc---------CchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHH
Confidence 1234666788888763 2222 567999999999999999999999771
Q ss_pred --ccccc---eec---ccc-cccEEEEEeCCeeC
Q psy845 653 --KSGVN---ITR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 653 --~~~~T---ILs---TI~-~aDrIlVLd~GrIV 677 (677)
.-|.| |.| .++ -||||+||++|+||
T Consensus 476 q~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iV 509 (539)
T COG1123 476 QEELGLTYLFISHDLAVVRYIADRVAVMYDGRIV 509 (539)
T ss_pred HHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEE
Confidence 12334 222 333 39999999999986
No 57
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=8.3e-36 Score=301.98 Aligned_cols=183 Identities=32% Similarity=0.522 Sum_probs=157.3
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+++|++++|+++.+++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++...
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----------- 69 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALA----------- 69 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhc-----------
Confidence 478999999975445699999999999999999999999999999999999999999999999988665
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC-C
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG-R 595 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~-~ 595 (677)
+.+.+|+.++|+||++.+|+.|++||+.+.. .
T Consensus 70 -----------------------------------------------~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~ 102 (237)
T cd03252 70 -----------------------------------------------DPAWLRRQVGVVLQENVLFNRSIRDNIALADPG 102 (237)
T ss_pred -----------------------------------------------CHHHHhhcEEEEcCCchhccchHHHHhhccCCC
Confidence 5566788999999999999999999997643 2
Q ss_pred CChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh----------------------
Q psy845 596 CHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK---------------------- 651 (677)
Q Consensus 596 ~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL---------------------- 651 (677)
.+.+++.++++..++.++++.+|.|+++.. .+.+||||||||++||||++++|+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~ 182 (237)
T cd03252 103 MSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMH 182 (237)
T ss_pred CCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 345667788888999999999999999876 68899999999999999999999876
Q ss_pred -cccccce------ecccccccEEEEEeCCeeC
Q psy845 652 -KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
..+++|| ...+..||+|++|++|+++
T Consensus 183 ~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~ 215 (237)
T cd03252 183 DICAGRTVIIIAHRLSTVKNADRIIVMEKGRIV 215 (237)
T ss_pred HhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEE
Confidence 1235663 2234569999999999974
No 58
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7e-36 Score=298.19 Aligned_cols=174 Identities=33% Similarity=0.463 Sum_probs=142.8
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-|+++||+.+|++. .||+|||+++++||+++|+||||||||||+++|.++-+|++|+|.+||.++..-.
T Consensus 2 mi~i~~l~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~--------- 70 (240)
T COG1126 2 MIEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKK--------- 70 (240)
T ss_pred eEEEEeeeEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchh---------
Confidence 38999999999864 6999999999999999999999999999999999999999999999998874430
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~ 594 (677)
+...+|+++|+|+|...|| +.|+-||+....
T Consensus 71 ------------------------------------------------~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap 102 (240)
T COG1126 71 ------------------------------------------------DILKLRRKVGMVFQQFNLFPHLTVLENVTLAP 102 (240)
T ss_pred ------------------------------------------------hHHHHHHhcCeecccccccccchHHHHHHhhh
Confidence 5678899999999999999 689999996432
Q ss_pred ----CCChHH----HHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 595 ----RCHDTE----LWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 595 ----~~sdee----I~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
..+.+| -.+.++++|+.+.....| .+|||||+||+||||||.-+|+++
T Consensus 103 ~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP---------~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~ 173 (240)
T COG1126 103 VKVKKLSKAEAREKALELLEKVGLADKADAYP---------AQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVG 173 (240)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc---------cccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHH
Confidence 233333 344677888887766644 689999999999999999999876
Q ss_pred ---------cccccc-e--eccc----ccccEEEEEeCCeeC
Q psy845 652 ---------KKSGVN-I--TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~~~~T-I--LsTI----~~aDrIlVLd~GrIV 677 (677)
+.+|.| | +|.. +-||||+.||+|+|+
T Consensus 174 EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~ii 215 (240)
T COG1126 174 EVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKII 215 (240)
T ss_pred HHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEE
Confidence 235666 2 4432 238999999999874
No 59
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-36 Score=335.40 Aligned_cols=232 Identities=26% Similarity=0.412 Sum_probs=180.6
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC--CccEEEECCEecccccHHH-hhh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL--SSGQIKIDDFDIASVELET-LRS 512 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p--~~G~I~IdG~dI~~l~~~~-~~~ 512 (677)
-++++|++++|++ .++|+|+||++++||++||+||||||||||+|+|+|+++| ++|+|.+||.++...+..+ .++
T Consensus 5 ~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 4899999999964 3699999999999999999999999999999999999996 8999999999997765443 467
Q ss_pred hcccccCCccccc-------------------------------------------------------------------
Q psy845 513 RLSVIPQDPVLFN------------------------------------------------------------------- 525 (677)
Q Consensus 513 ~i~~v~q~~~lf~------------------------------------------------------------------- 525 (677)
++||+||++.+++
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p 162 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQA 162 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCC
Confidence 8999999864321
Q ss_pred --------------------------------------------------------------------------------
Q psy845 526 -------------------------------------------------------------------------------- 525 (677)
Q Consensus 526 -------------------------------------------------------------------------------- 525 (677)
T Consensus 163 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 242 (506)
T PRK13549 163 RLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTEDDIITMMVGR 242 (506)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCCHHHHHHHhhCc
Confidence
Q ss_pred -------------------------------------------------cccccCCCCCchhHHHHHHhhh-hccccccc
Q psy845 526 -------------------------------------------------GIVGRTGAGKSSLLVALFRLVE-LSSGQIKI 555 (677)
Q Consensus 526 -------------------------------------------------~~~~~n~~~~~~~~~~~~~~~~-~~~g~i~~ 555 (677)
+.+|.||||||||+++|.|+.+ |++|+|++
T Consensus 243 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~ 322 (506)
T PRK13549 243 ELTALYPREPHTIGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFI 322 (506)
T ss_pred CccccccccccCCCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEE
Confidence 6779999999999999999998 59999999
Q ss_pred cccchhhhh-HHHHhhhcccccccc---ccc-ccchhhccccCC--CC------Ch----HHHHHHHHHccchhhHhhhh
Q psy845 556 DDFDIASVE-LETLRSRLSVIPQDP---VLF-NGTIRYNLDPFG--RC------HD----TELWDALEKSHLKSKVVTMR 618 (677)
Q Consensus 556 ~~~~~~~~~-~~~LR~~I~~V~Qd~---~LF-sgTIrENI~~~~--~~------sd----eeI~~Al~~a~l~efI~~LP 618 (677)
+|.+++..+ .+..|+.++||+|++ .+| +.|+.||+.+.. .. +. +++.++++..++.+
T Consensus 323 ~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------ 396 (506)
T PRK13549 323 DGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKT------ 396 (506)
T ss_pred CCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccC------
Confidence 999886543 345678899999996 355 569999996421 11 11 12333444443320
Q ss_pred cccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------------cccccce---ecc---c-ccccE
Q psy845 619 SKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------------KKSGVNI---TRP---V-TSCDK 667 (677)
Q Consensus 619 ~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------------~~~~~TI---LsT---I-~~aDr 667 (677)
+..+. ...+||||||||++||||++++|+++ ..+++|| .|. + +.|||
T Consensus 397 ~~~~~--~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~ 474 (506)
T PRK13549 397 ASPEL--AIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDR 474 (506)
T ss_pred CCccc--ccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCE
Confidence 01111 46799999999999999999999976 1235663 222 3 34999
Q ss_pred EEEEeCCeeC
Q psy845 668 VLVMDNGQAL 677 (677)
Q Consensus 668 IlVLd~GrIV 677 (677)
+++|++|+++
T Consensus 475 v~~l~~G~i~ 484 (506)
T PRK13549 475 VLVMHEGKLK 484 (506)
T ss_pred EEEEECCEEE
Confidence 9999999974
No 60
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.6e-35 Score=332.60 Aligned_cols=232 Identities=24% Similarity=0.398 Sum_probs=181.5
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHh-hhhc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL-RSRL 514 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~-~~~i 514 (677)
-++++|++++|++ +.+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+..+. ++++
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 11 LLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred eEEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 5999999999975 359999999999999999999999999999999999999999999999999987665554 3579
Q ss_pred ccccCCccccc---------------------------------------------------------------------
Q psy845 515 SVIPQDPVLFN--------------------------------------------------------------------- 525 (677)
Q Consensus 515 ~~v~q~~~lf~--------------------------------------------------------------------- 525 (677)
||+||++.+++
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt 168 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPT 168 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 99999986553
Q ss_pred --------------------------------------------------------------------------------
Q psy845 526 -------------------------------------------------------------------------------- 525 (677)
Q Consensus 526 -------------------------------------------------------------------------------- 525 (677)
T Consensus 169 ~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (510)
T PRK15439 169 ASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDDIIQAITPAAREKSLSAS 248 (510)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHHHHHHHHhCcccccccccc
Confidence
Q ss_pred --------------------------------------------cccccCCCCCchhHHHHHHhhhhccccccccccchh
Q psy845 526 --------------------------------------------GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA 561 (677)
Q Consensus 526 --------------------------------------------~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ 561 (677)
+.+|.||||||||+++|.|+.+|++|+|.++|.++.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~ 328 (510)
T PRK15439 249 QKLWLELPGNRRQQAAGAPVLTVEDLTGEGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEIN 328 (510)
T ss_pred ccccccccccccccCCCCceEEEeCCCCCCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECC
Confidence 566789999999999999999999999999999987
Q ss_pred hhhHHH-Hhhhcccccccc---cccc-cchhhccccC--C--C--C-Ch---HHHHHHHHHccchhhHhhhhcccCCCCC
Q psy845 562 SVELET-LRSRLSVIPQDP---VLFN-GTIRYNLDPF--G--R--C-HD---TELWDALEKSHLKSKVVTMRSKLDSDVQ 626 (677)
Q Consensus 562 ~~~~~~-LR~~I~~V~Qd~---~LFs-gTIrENI~~~--~--~--~-sd---eeI~~Al~~a~l~efI~~LP~GldT~v~ 626 (677)
..+... .|++++|+||++ .+|. .|+.||+... . . . .. +++.++++..++. ++..+. .
T Consensus 329 ~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~--~ 400 (510)
T PRK15439 329 ALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIK------FNHAEQ--A 400 (510)
T ss_pred CCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCC------CCCccC--c
Confidence 665443 567899999986 3664 5999998421 0 0 0 11 1233344444332 011222 4
Q ss_pred CCCCChHHHHHHHHHHHHhccchhh------------------------cccccce---ecc---c-ccccEEEEEeCCe
Q psy845 627 GDQLSLGEKQLLCLARALLRKTKKK------------------------KKSGVNI---TRP---V-TSCDKVLVMDNGQ 675 (677)
Q Consensus 627 G~~LSGGQRQRIaIARALLr~p~IL------------------------~~~~~TI---LsT---I-~~aDrIlVLd~Gr 675 (677)
..+||||||||++||||++.+|+++ ..++.|| .|. + +-||||++|++|+
T Consensus 401 ~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~ 480 (510)
T PRK15439 401 ARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGE 480 (510)
T ss_pred cccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 6799999999999999999999976 1135663 222 3 3499999999999
Q ss_pred eC
Q psy845 676 AL 677 (677)
Q Consensus 676 IV 677 (677)
++
T Consensus 481 i~ 482 (510)
T PRK15439 481 IS 482 (510)
T ss_pred EE
Confidence 74
No 61
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-35 Score=295.92 Aligned_cols=184 Identities=36% Similarity=0.600 Sum_probs=158.8
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
++++++|++++|+++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~--------- 70 (229)
T cd03254 1 GEIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDI--------- 70 (229)
T ss_pred CeEEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHc---------
Confidence 368999999999743 3599999999999999999999999999999999999999999999999988665
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG 594 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~ 594 (677)
+.+.+|+.++|++|++.+|++|++||+.+..
T Consensus 71 -------------------------------------------------~~~~~~~~i~~~~q~~~~~~~tv~~~~~~~~ 101 (229)
T cd03254 71 -------------------------------------------------SRKSLRSMIGVVLQDTFLFSGTIMENIRLGR 101 (229)
T ss_pred -------------------------------------------------CHHHHhhhEEEecCCchhhhhHHHHHHhccC
Confidence 5567888999999999999999999997653
Q ss_pred -CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh--------------------
Q psy845 595 -RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK-------------------- 651 (677)
Q Consensus 595 -~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL-------------------- 651 (677)
...++++.++++..++.++++++|.|+++.. ...+||||||||++||||++++|+++
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~ 181 (229)
T cd03254 102 PNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEA 181 (229)
T ss_pred CCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH
Confidence 3345678888899999999999999999877 67899999999999999999999976
Q ss_pred ---cccccce---e---cccccccEEEEEeCCeeC
Q psy845 652 ---KKSGVNI---T---RPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---~~~~~TI---L---sTI~~aDrIlVLd~GrIV 677 (677)
..+++|| . ..+..||+|++|++|+++
T Consensus 182 l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~ 216 (229)
T cd03254 182 LEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKII 216 (229)
T ss_pred HHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEE
Confidence 1235563 2 234569999999999973
No 62
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-35 Score=315.26 Aligned_cols=171 Identities=30% Similarity=0.394 Sum_probs=140.3
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.|+++||+++|++.. +++|+|++|++||.++++|||||||||++++|+|+.+|++|+|.+||.|+++++++
T Consensus 3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~------- 73 (338)
T COG3839 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPE------- 73 (338)
T ss_pred EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh-------
Confidence 589999999998642 99999999999999999999999999999999999999999999999999998433
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~ 594 (677)
+++||+|+|+.-|| +.|++|||.++-
T Consensus 74 -----------------------------------------------------~R~iamVFQ~yALyPhmtV~~Niaf~L 100 (338)
T COG3839 74 -----------------------------------------------------KRGIAMVFQNYALYPHMTVYENIAFGL 100 (338)
T ss_pred -----------------------------------------------------HCCEEEEeCCccccCCCcHHHHhhhhh
Confidence 25666666666666 569999998642
Q ss_pred C-------CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc---------------
Q psy845 595 R-------CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK--------------- 652 (677)
Q Consensus 595 ~-------~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~--------------- 652 (677)
+ .-++++.++++..++.+.+++.| .+||||||||+|+||||+|+|+++.
T Consensus 101 k~~~~~k~ei~~rV~eva~~L~l~~lL~r~P---------~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~ 171 (338)
T COG3839 101 KLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP---------LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVL 171 (338)
T ss_pred hhCCCchHHHHHHHHHHHHHcCChhHHhcCc---------ccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHH
Confidence 1 22456788999999998887754 6899999999999999999999651
Q ss_pred ----------ccccc-e--ecc----cccccEEEEEeCCeeC
Q psy845 653 ----------KSGVN-I--TRP----VTSCDKVLVMDNGQAL 677 (677)
Q Consensus 653 ----------~~~~T-I--LsT----I~~aDrIlVLd~GrIV 677 (677)
.-+.| | +|. ..-||||.||++|+|.
T Consensus 172 mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~ 213 (338)
T COG3839 172 MRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQ 213 (338)
T ss_pred HHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeee
Confidence 12234 3 332 2349999999999974
No 63
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.8e-35 Score=295.55 Aligned_cols=183 Identities=29% Similarity=0.507 Sum_probs=157.1
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+++|++++|++...++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----------- 69 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDY----------- 69 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhC-----------
Confidence 478999999976434699999999999999999999999999999999999999999999999987665
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC-C
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG-R 595 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~-~ 595 (677)
+.+.+|+.++|++|++.+|+.|++||+.++. .
T Consensus 70 -----------------------------------------------~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~ 102 (234)
T cd03251 70 -----------------------------------------------TLASLRRQIGLVSQDVFLFNDTVAENIAYGRPG 102 (234)
T ss_pred -----------------------------------------------CHHHHHhhEEEeCCCCeeccccHHHHhhccCCC
Confidence 5566788999999999999999999998653 3
Q ss_pred CChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh----------------------
Q psy845 596 CHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK---------------------- 651 (677)
Q Consensus 596 ~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL---------------------- 651 (677)
...+++.++++..++.++++.+|.|+++.. ...+||||||||++||||++++|+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~ 182 (234)
T cd03251 103 ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALE 182 (234)
T ss_pred CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 455677788888999999999999999877 67899999999999999999999976
Q ss_pred -cccccce------ecccccccEEEEEeCCeeC
Q psy845 652 -KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
..+++|| ...+..||+|++|++|+++
T Consensus 183 ~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~ 215 (234)
T cd03251 183 RLMKNRTTFVIAHRLSTIENADRIVVLEDGKIV 215 (234)
T ss_pred HhcCCCEEEEEecCHHHHhhCCEEEEecCCeEe
Confidence 1235563 2234569999999999974
No 64
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-35 Score=301.61 Aligned_cols=172 Identities=30% Similarity=0.428 Sum_probs=141.1
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+|+|||++|.+. .+++|+||+|++||.+.++|||||||||++|++.|+.+|++|+|++||.|++++
T Consensus 2 I~~~nvsk~y~~~--~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~----------- 68 (309)
T COG1125 2 IEFENVSKRYGNK--KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDL----------- 68 (309)
T ss_pred ceeeeeehhcCCc--eeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccC-----------
Confidence 7899999999853 699999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~- 594 (677)
+..+||++||||-|..-|| +.||.|||..-.
T Consensus 69 -----------------------------------------------d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~ 101 (309)
T COG1125 69 -----------------------------------------------DPVELRRKIGYVIQQIGLFPHLTVAENIATVPK 101 (309)
T ss_pred -----------------------------------------------CHHHHHHhhhhhhhhcccCCCccHHHHHHhhhh
Confidence 6666677777777777777 789999996321
Q ss_pred --CCC----hHHHHHHHHHccch--hhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 595 --RCH----DTELWDALEKSHLK--SKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 595 --~~s----deeI~~Al~~a~l~--efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
..+ +++..+.++.+|++ +|..+. ..+|||||+||+.+||||..+|+++
T Consensus 102 L~~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry---------P~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~ 172 (309)
T COG1125 102 LLGWDKERIKKRADELLDLVGLDPSEYADRY---------PHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRK 172 (309)
T ss_pred hcCCCHHHHHHHHHHHHHHhCCCHHHHhhcC---------chhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHH
Confidence 223 34466677888876 355443 4789999999999999999999977
Q ss_pred ----------cccccce---ecc----cccccEEEEEeCCeeC
Q psy845 652 ----------KKSGVNI---TRP----VTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----------~~~~~TI---LsT----I~~aDrIlVLd~GrIV 677 (677)
..-++|| +|. ++-+|||.||++|+++
T Consensus 173 ~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~ 215 (309)
T COG1125 173 QLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIV 215 (309)
T ss_pred HHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEE
Confidence 1235663 444 4559999999999985
No 65
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.2e-34 Score=289.95 Aligned_cols=185 Identities=35% Similarity=0.509 Sum_probs=157.5
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
++++++|++++|+++..++++|+||++++||++||+||||||||||+++|+|+.+|++|+|.++|.++.+.
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~--------- 71 (220)
T cd03245 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQL--------- 71 (220)
T ss_pred CeEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHC---------
Confidence 35899999999975434699999999999999999999999999999999999999999999999987665
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG 594 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~ 594 (677)
+...+|+.++|++|++.+|..|++||+.+..
T Consensus 72 -------------------------------------------------~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~ 102 (220)
T cd03245 72 -------------------------------------------------DPADLRRNIGYVPQDVTLFYGTLRDNITLGA 102 (220)
T ss_pred -------------------------------------------------CHHHHHhhEEEeCCCCccccchHHHHhhcCC
Confidence 4455788999999999999899999997643
Q ss_pred -CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh--------------------
Q psy845 595 -RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK-------------------- 651 (677)
Q Consensus 595 -~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL-------------------- 651 (677)
..+.+++.++++..++.+.+.+.|.|++|.+ ...+||||||||++||||++++|+++
T Consensus 103 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 182 (220)
T cd03245 103 PLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKER 182 (220)
T ss_pred CCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH
Confidence 2345577888999999999999999999988 67899999999999999999999976
Q ss_pred ---cccccce---e---cccccccEEEEEeCCeeC
Q psy845 652 ---KKSGVNI---T---RPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---~~~~~TI---L---sTI~~aDrIlVLd~GrIV 677 (677)
..+++|| . ..++.||+|++|++|+++
T Consensus 183 l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~ 217 (220)
T cd03245 183 LRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIV 217 (220)
T ss_pred HHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEe
Confidence 1123452 2 224569999999999974
No 66
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=2.2e-31 Score=299.77 Aligned_cols=457 Identities=20% Similarity=0.190 Sum_probs=311.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh-hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 111 WFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSML-FAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNM 189 (677)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~q~~ 189 (677)
|..+.++++.+++-.--.+|.+.|.++.+....-++ -+++.-..+++..++..+++.++-+.+.+-++-..+++ +
T Consensus 46 ~~l~~~i~~~~l~~v~~~v~~~~w~~~~~~aL~~~d~~~f~~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~w----L 121 (604)
T COG4178 46 WLLLIGILALILLSVRGQVLLNDWNGPFYNALARRDLAAFWQQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREW----L 121 (604)
T ss_pred HHHHHHHHHHHHHHhheeeeeHhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 444555555666667778899999999887776544 45566666666777777777777666666555444444 5
Q ss_pred HHHHHHHHhhhcccccc-----------ccchhHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhH------
Q psy845 190 WSMLFAFLMICFVFPWF-----------ALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPW------ 252 (677)
Q Consensus 190 ~~~~f~~~~~~~~~~~f-----------~~~~~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~------ 252 (677)
|.++..--+..+ ++| |+|..|++-|.....+.-.+.. ..+++++++++...+++.-.+..
T Consensus 122 t~~l~~~wl~~~--~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~-~g~l~s~islisF~~iLw~lsg~~~~~~~ 198 (604)
T COG4178 122 TKDLLDRWLDPR--RYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLS-FGLLQSVISLISFTGILWSLSGGLAFTIG 198 (604)
T ss_pred HHHHHHHHhcCC--chHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHccCcceEeec
Confidence 555554444433 222 4577887766666555332333 34677777766666555533221
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHH
Q psy845 253 ---------FALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDEN 323 (677)
Q Consensus 253 ---------lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~ 323 (677)
+...+++-++..-++...+++...++.-..+...+++...+.-.-++.+.|-.++.|+.+.++.++..+..
T Consensus 199 g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v 278 (604)
T COG4178 199 GFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAV 278 (604)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 11112222222223333444544444444444456677777778889999999999999988888877776
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 324 STTLFLCSMA---MRWLAVRIDVLAVIAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVE 400 (677)
Q Consensus 324 ~~~~~~~~~~---~~~~~~~l~~l~~l~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~e 400 (677)
.+...+.... ..|++.....++. ++-...+......|.++.|.++.....+..+...+..+...+..+..-.+...
T Consensus 279 ~~n~~~l~~~~~~l~~~~~gy~~~s~-v~P~li~ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~ 357 (604)
T COG4178 279 LGNWRRLVRAQIRLTWFQLGYGWLSV-VLPILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLL 357 (604)
T ss_pred HHHHHHHHHHHHhhHHhhhhhhHHHH-HHHHHhccHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 6544333322 2233333333333 22333344467899999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcC--CCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChH
Q psy845 401 RINNCSKKLV--PEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKS 478 (677)
Q Consensus 401 RI~eil~~~~--~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKS 478 (677)
|+.++.+..+ .+++.......+. ... .+. .+..|+++|++..-|++. ..++++|+++++||.+-|.||||||||
T Consensus 358 Rl~~f~~ai~~~~~~~~~~~~~~~~-~~~-~~~-~~~~i~~~nl~l~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKT 433 (604)
T COG4178 358 RLAEFRQALEAAQMDTEKPARTGRR-IDF-DDN-ADHGITLENLSLRTPDGQ-TLLSELNFEVRPGERLLITGESGAGKT 433 (604)
T ss_pred HHHHHHHHHHhccCcccccCccccc-ccc-ccc-ccceeEEeeeeEECCCCC-eeeccceeeeCCCCEEEEECCCCCCHH
Confidence 9998863322 1111000000000 000 011 156899999999988764 689999999999999999999999999
Q ss_pred HHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhcccccccccc
Q psy845 479 SLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDF 558 (677)
Q Consensus 479 TLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~ 558 (677)
||+|.|+|+++--+|+|..-.
T Consensus 434 sLlRaiaGLWP~g~G~I~~P~----------------------------------------------------------- 454 (604)
T COG4178 434 SLLRALAGLWPWGSGRISMPA----------------------------------------------------------- 454 (604)
T ss_pred HHHHHHhccCccCCCceecCC-----------------------------------------------------------
Confidence 999999999999999875420
Q ss_pred chhhhhHHHHhhhcccccccccccccchhhccccCC---CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHH
Q psy845 559 DIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG---RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEK 635 (677)
Q Consensus 559 ~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~---~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQR 635 (677)
-+++-++||.|++-.||+||=+.+-. +.+|+|+.+++.++|+.++++++.+--+ =...||+|||
T Consensus 455 ----------~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~---W~~vLS~GEq 521 (604)
T COG4178 455 ----------DSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDR---WDRVLSGGEQ 521 (604)
T ss_pred ----------CCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCc---HhhhcChhHH
Confidence 02356889999999999999997532 3799999999999999999998743222 3568999999
Q ss_pred HHHHHHHHHhccchhh
Q psy845 636 QLLCLARALLRKTKKK 651 (677)
Q Consensus 636 QRIaIARALLr~p~IL 651 (677)
||+|+||.++++|+..
T Consensus 522 QRlafARilL~kP~~v 537 (604)
T COG4178 522 QRLAFARLLLHKPKWV 537 (604)
T ss_pred HHHHHHHHHHcCCCEE
Confidence 9999999999999976
No 67
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-34 Score=293.42 Aligned_cols=182 Identities=38% Similarity=0.617 Sum_probs=157.9
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|+++ ..+++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~----------- 68 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREV----------- 68 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhC-----------
Confidence 4689999999743 3599999999999999999999999999999999999999999999999988776
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC-C
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG-R 595 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~-~ 595 (677)
+...+|+.++|++|++.+|++|++||+.++. .
T Consensus 69 -----------------------------------------------~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~ 101 (236)
T cd03253 69 -----------------------------------------------TLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPD 101 (236)
T ss_pred -----------------------------------------------CHHHHHhhEEEECCCChhhcchHHHHHhhcCCC
Confidence 5667788999999999999999999997643 3
Q ss_pred CChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh----------------------
Q psy845 596 CHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK---------------------- 651 (677)
Q Consensus 596 ~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL---------------------- 651 (677)
.+++++.++++..++.+.+..+|.|+++.+ +..+||||||||++||||++++|+++
T Consensus 102 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~ 181 (236)
T cd03253 102 ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALR 181 (236)
T ss_pred CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 456778888899999999999999999987 67899999999999999999999976
Q ss_pred -cccccce------ecccccccEEEEEeCCeeC
Q psy845 652 -KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
..+++|| ...+..||++++|++|+++
T Consensus 182 ~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~ 214 (236)
T cd03253 182 DVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIV 214 (236)
T ss_pred HhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEE
Confidence 1125563 2234569999999999974
No 68
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=6.8e-35 Score=326.06 Aligned_cols=231 Identities=23% Similarity=0.341 Sum_probs=179.2
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC--CccEEEECCEecccccHHH-hhhh
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL--SSGQIKIDDFDIASVELET-LRSR 513 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p--~~G~I~IdG~dI~~l~~~~-~~~~ 513 (677)
++++|++++|++ .++|+|+||++++||++||+||||||||||+++|+|+++| ++|+|.+||.++.+.+..+ .+++
T Consensus 2 l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 2 LEMKGIVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEEEeEEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 689999999964 3599999999999999999999999999999999999987 7999999999998765443 4567
Q ss_pred cccccCCccc----------------------cc----------------------------------------------
Q psy845 514 LSVIPQDPVL----------------------FN---------------------------------------------- 525 (677)
Q Consensus 514 i~~v~q~~~l----------------------f~---------------------------------------------- 525 (677)
+||+||++.+ ++
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~ 159 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQ 159 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhC
Confidence 9999998531 10
Q ss_pred --------------------------------------------------------------------------------
Q psy845 526 -------------------------------------------------------------------------------- 525 (677)
Q Consensus 526 -------------------------------------------------------------------------------- 525 (677)
T Consensus 160 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 239 (500)
T TIGR02633 160 ARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMSEDDIITMMVG 239 (500)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccCCHHHHHHHHhC
Confidence
Q ss_pred --------------------------------------------------cccccCCCCCchhHHHHHHhhhh-cccccc
Q psy845 526 --------------------------------------------------GIVGRTGAGKSSLLVALFRLVEL-SSGQIK 554 (677)
Q Consensus 526 --------------------------------------------------~~~~~n~~~~~~~~~~~~~~~~~-~~g~i~ 554 (677)
+.+|.||||||||+++|.|+.+| ++|+|.
T Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~ 319 (500)
T TIGR02633 240 REITSLYPHEPHEIGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVF 319 (500)
T ss_pred ccccccccccccCCCCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEE
Confidence 66788999999999999999995 899999
Q ss_pred ccccchhhh-hHHHHhhhcccccccc---ccc-ccchhhccccCC-----C---CCh----HHHHHHHHHccchhhHhhh
Q psy845 555 IDDFDIASV-ELETLRSRLSVIPQDP---VLF-NGTIRYNLDPFG-----R---CHD----TELWDALEKSHLKSKVVTM 617 (677)
Q Consensus 555 ~~~~~~~~~-~~~~LR~~I~~V~Qd~---~LF-sgTIrENI~~~~-----~---~sd----eeI~~Al~~a~l~efI~~L 617 (677)
++|.++... +.+.+|++++||+|++ .+| +.|++||+.+.. . ... +++.++++..++.+.
T Consensus 320 ~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---- 395 (500)
T TIGR02633 320 INGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTA---- 395 (500)
T ss_pred ECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCC----
Confidence 999998643 3456789999999996 366 469999997531 0 111 123444444443210
Q ss_pred hcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------------cccccce---ecc---c-cccc
Q psy845 618 RSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------------KKSGVNI---TRP---V-TSCD 666 (677)
Q Consensus 618 P~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------------~~~~~TI---LsT---I-~~aD 666 (677)
-.+. ....||||||||++||||++++|+++ ..++.|| .|. + +-||
T Consensus 396 --~~~~--~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d 471 (500)
T TIGR02633 396 --SPFL--PIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSD 471 (500)
T ss_pred --CccC--ccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCC
Confidence 0122 46799999999999999999999976 1235563 232 2 3499
Q ss_pred EEEEEeCCeeC
Q psy845 667 KVLVMDNGQAL 677 (677)
Q Consensus 667 rIlVLd~GrIV 677 (677)
||++|++|+++
T Consensus 472 ~v~~l~~G~i~ 482 (500)
T TIGR02633 472 RVLVIGEGKLK 482 (500)
T ss_pred EEEEEECCEEE
Confidence 99999999974
No 69
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=5.6e-35 Score=312.90 Aligned_cols=172 Identities=28% Similarity=0.405 Sum_probs=142.7
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
..++++||+.+|++ ..+++|+|++|++||.++++|||||||||++++|+||.+|++|+|.+||.|+.+++++
T Consensus 4 ~~l~i~~v~k~yg~--~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~------ 75 (352)
T COG3842 4 PALEIRNVSKSFGD--FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE------ 75 (352)
T ss_pred ceEEEEeeeeecCC--eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh------
Confidence 36999999999983 4799999999999999999999999999999999999999999999999999998433
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~ 593 (677)
+++|++|+|+.-|| +.||+||+.++
T Consensus 76 ------------------------------------------------------kR~ig~VFQ~YALFPHltV~~NVafG 101 (352)
T COG3842 76 ------------------------------------------------------KRPIGMVFQSYALFPHMTVEENVAFG 101 (352)
T ss_pred ------------------------------------------------------hcccceeecCcccCCCCcHHHHhhhh
Confidence 45666666666666 78999999865
Q ss_pred CC----CChH----HHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------------
Q psy845 594 GR----CHDT----ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------------- 651 (677)
Q Consensus 594 ~~----~sde----eI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------------- 651 (677)
=+ ..++ ++.++++.+++.++-.+. ..+|||||+||+||||||..+|+++
T Consensus 102 Lk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~---------p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR 172 (352)
T COG3842 102 LKVRKKLKKAEIKARVEEALELVGLEGFADRK---------PHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLR 172 (352)
T ss_pred hhhcCCCCHHHHHHHHHHHHHHcCchhhhhhC---------hhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHH
Confidence 22 2333 578899999999877664 4789999999999999999999876
Q ss_pred -----------cccccc-e--ec----ccccccEEEEEeCCeeC
Q psy845 652 -----------KKSGVN-I--TR----PVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----------~~~~~T-I--Ls----TI~~aDrIlVLd~GrIV 677 (677)
...|.| | +| .+.-+|||.||++|+|.
T Consensus 173 ~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~ 216 (352)
T COG3842 173 EQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIE 216 (352)
T ss_pred HHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCcee
Confidence 123455 3 33 34569999999999984
No 70
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.9e-34 Score=290.00 Aligned_cols=185 Identities=33% Similarity=0.509 Sum_probs=156.1
Q ss_pred CccEEEEeeeEEeCCC-CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhh
Q psy845 434 QGTIKFKNVSLRYRDN-WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS 512 (677)
Q Consensus 434 ~g~I~fknVsFsY~~~-~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~ 512 (677)
.+.++++|++++|+++ ..++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~------- 81 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQY------- 81 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHc-------
Confidence 5679999999999753 23699999999999999999999999999999999999999999999999887655
Q ss_pred hcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcccc
Q psy845 513 RLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDP 592 (677)
Q Consensus 513 ~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~ 592 (677)
+....|+.++|++|++.+|++|++||+.+
T Consensus 82 ---------------------------------------------------~~~~~~~~i~~~~q~~~l~~~tv~~nl~~ 110 (226)
T cd03248 82 ---------------------------------------------------EHKYLHSKVSLVGQEPVLFARSLQDNIAY 110 (226)
T ss_pred ---------------------------------------------------CHHHHHhhEEEEecccHHHhhhHHHHhcc
Confidence 45567889999999999999999999985
Q ss_pred CC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh------------------
Q psy845 593 FG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK------------------ 651 (677)
Q Consensus 593 ~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL------------------ 651 (677)
.. ....+++.+..+..+++++++.+|.|+++.+ ...+||||||||++||||++++|+++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~ 190 (226)
T cd03248 111 GLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQ 190 (226)
T ss_pred ccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 43 2344556666777888999999999998877 68999999999999999999999976
Q ss_pred -----cccccce------ecccccccEEEEEeCCee
Q psy845 652 -----KKSGVNI------TRPVTSCDKVLVMDNGQA 676 (677)
Q Consensus 652 -----~~~~~TI------LsTI~~aDrIlVLd~GrI 676 (677)
..+++|| .+.+..||+|++|++|++
T Consensus 191 ~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 191 QALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred HHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 1234552 223456999999999985
No 71
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=2.5e-34 Score=291.33 Aligned_cols=183 Identities=36% Similarity=0.557 Sum_probs=155.5
Q ss_pred EEEEeeeEEeCCC-CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 437 IKFKNVSLRYRDN-WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 437 I~fknVsFsY~~~-~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
++++|++++|++. ..++++|+||++++||.+||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~---------- 70 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDL---------- 70 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhc----------
Confidence 4689999999753 24699999999999999999999999999999999999999999999999987665
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC-
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG- 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~- 594 (677)
+....|++++|++|++.+|+.|++||+.++.
T Consensus 71 ------------------------------------------------~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~ 102 (238)
T cd03249 71 ------------------------------------------------NLRWLRSQIGLVSQEPVLFDGTIAENIRYGKP 102 (238)
T ss_pred ------------------------------------------------CHHHHHhhEEEECCchhhhhhhHHHHhhccCC
Confidence 4556778899999999999999999997643
Q ss_pred CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh---------------------
Q psy845 595 RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK--------------------- 651 (677)
Q Consensus 595 ~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL--------------------- 651 (677)
....+++.+.++..++.+++..+|.|+++.. ...+||||||||++||||++++|+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l 182 (238)
T cd03249 103 DATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEAL 182 (238)
T ss_pred CCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 3345667778888899999999999999877 67899999999999999999999876
Q ss_pred --cccccce------ecccccccEEEEEeCCeeC
Q psy845 652 --KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
..+++|| ++.+..||+|++|++|+++
T Consensus 183 ~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~ 216 (238)
T cd03249 183 DRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVV 216 (238)
T ss_pred HHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEE
Confidence 1245663 2234569999999999974
No 72
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.5e-34 Score=284.79 Aligned_cols=173 Identities=52% Similarity=0.909 Sum_probs=143.0
Q ss_pred CCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHh
Q psy845 431 WPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 431 ~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~ 510 (677)
||..+.++++|++++|++...++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----- 75 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTI----- 75 (207)
T ss_pred CCCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHC-----
Confidence 455678999999999976434699999999999999999999999999999999999999999999999988665
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcc
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNL 590 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI 590 (677)
+.+++|++++|++|++.+|++|++||+
T Consensus 76 -----------------------------------------------------~~~~~~~~i~~v~q~~~~~~~tv~~~l 102 (207)
T cd03369 76 -----------------------------------------------------PLEDLRSSLTIIPQDPTLFSGTIRSNL 102 (207)
T ss_pred -----------------------------------------------------CHHHHHhhEEEEecCCcccCccHHHHh
Confidence 566778899999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------------
Q psy845 591 DPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------- 651 (677)
Q Consensus 591 ~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------- 651 (677)
......+++++.++++ ++. +..+|||||+||++||||++++|+++
T Consensus 103 ~~~~~~~~~~~~~~l~--------------~~~--~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~ 166 (207)
T cd03369 103 DPFDEYSDEEIYGALR--------------VSE--GGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQK 166 (207)
T ss_pred cccCCCCHHHHHHHhh--------------ccC--CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHH
Confidence 7654444555555444 121 56799999999999999999999976
Q ss_pred ----cccccce---e---cccccccEEEEEeCCeeC
Q psy845 652 ----KKSGVNI---T---RPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----~~~~~TI---L---sTI~~aDrIlVLd~GrIV 677 (677)
..+++|+ . ..+..||++++|++|+++
T Consensus 167 ~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~ 202 (207)
T cd03369 167 TIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVK 202 (207)
T ss_pred HHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEE
Confidence 1235562 2 234569999999999974
No 73
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=3.2e-34 Score=323.08 Aligned_cols=232 Identities=27% Similarity=0.469 Sum_probs=179.2
Q ss_pred cEEEEeeeEEeCCC--CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CccEEEECCEecccccHH
Q psy845 436 TIKFKNVSLRYRDN--WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIASVELE 508 (677)
Q Consensus 436 ~I~fknVsFsY~~~--~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-----~~G~I~IdG~dI~~l~~~ 508 (677)
-++++|++++|+++ ..++|+|+||++++||++||+||||||||||+++|+|+++| ++|+|.+||.++.+.+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999642 24699999999999999999999999999999999999987 799999999999776543
Q ss_pred H---hh-hhcccccCCcc--ccc---------------------------------------------------------
Q psy845 509 T---LR-SRLSVIPQDPV--LFN--------------------------------------------------------- 525 (677)
Q Consensus 509 ~---~~-~~i~~v~q~~~--lf~--------------------------------------------------------- 525 (677)
+ .+ +++|++||++. +++
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qr 164 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQR 164 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHH
Confidence 2 33 57999999963 110
Q ss_pred --------------------------------------------------------------------------------
Q psy845 526 -------------------------------------------------------------------------------- 525 (677)
Q Consensus 526 -------------------------------------------------------------------------------- 525 (677)
T Consensus 165 v~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 244 (529)
T PRK15134 165 VMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATL 244 (529)
T ss_pred HHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence
Q ss_pred -----------------------------------------------------------------------cccccCCCC
Q psy845 526 -----------------------------------------------------------------------GIVGRTGAG 534 (677)
Q Consensus 526 -----------------------------------------------------------------------~~~~~n~~~ 534 (677)
+.+|.||||
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsG 324 (529)
T PRK15134 245 FSAPTHPYTQKLLNSEPSGDPVPLPEPASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSG 324 (529)
T ss_pred hhCCCCHHHHHHHHhCccccccccCCCCCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCC
Confidence 122568999
Q ss_pred CchhHHHHHHhhhhccccccccccchhhhhHH---HHhhhcccccccc--cccc-cchhhccccCC-----CCC----hH
Q psy845 535 KSSLLVALFRLVELSSGQIKIDDFDIASVELE---TLRSRLSVIPQDP--VLFN-GTIRYNLDPFG-----RCH----DT 599 (677)
Q Consensus 535 ~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~---~LR~~I~~V~Qd~--~LFs-gTIrENI~~~~-----~~s----de 599 (677)
||||+++|.|+.+ ++|+|+++|.++...+.+ .+|++++||+|++ .+|. .|++||+.+.. ..+ ++
T Consensus 325 KSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 403 (529)
T PRK15134 325 KSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQ 403 (529)
T ss_pred HHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHH
Confidence 9999999999995 999999999998765443 3578899999998 3664 69999996421 111 23
Q ss_pred HHHHHHHHccch-hhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------------ccc
Q psy845 600 ELWDALEKSHLK-SKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------------KKS 654 (677)
Q Consensus 600 eI~~Al~~a~l~-efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------------~~~ 654 (677)
++.++++..++. +.. +. ...+||||||||++||||++.+|+++ ..+
T Consensus 404 ~~~~~l~~~~l~~~~~-------~~--~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 474 (529)
T PRK15134 404 QVIAVMEEVGLDPETR-------HR--YPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQK 474 (529)
T ss_pred HHHHHHHHcCCCHHHH-------hc--CCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHh
Confidence 345566666653 222 11 45789999999999999999999976 112
Q ss_pred -ccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 655 -GVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 655 -~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
++|| .|. + ..||||++|++|+++
T Consensus 475 ~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~ 505 (529)
T PRK15134 475 HQLAYLFISHDLHVVRALCHQVIVLRQGEVV 505 (529)
T ss_pred hCCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 5673 332 2 249999999999974
No 74
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-34 Score=292.79 Aligned_cols=165 Identities=25% Similarity=0.314 Sum_probs=137.9
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.++++||+.+|++ ..||+|+||+|++||.++||||||||||||+|+++|+.+|++|+|.++|.+++.-
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p---------- 70 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP---------- 70 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC----------
Confidence 4789999999986 4699999999999999999999999999999999999999999999999988554
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~ 594 (677)
...++||+|++.||. .|++||+.++-
T Consensus 71 -----------------------------------------------------~~~~~~vFQ~~~LlPW~Tv~~NV~l~l 97 (248)
T COG1116 71 -----------------------------------------------------GPDIGYVFQEDALLPWLTVLDNVALGL 97 (248)
T ss_pred -----------------------------------------------------CCCEEEEeccCcccchhhHHhhheehh
Confidence 235777778888875 59999996542
Q ss_pred CC-------ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 RC-------HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ~~-------sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
+. ..+...++++.+|+.+|-...| .+||||||||+|||||++.+|+++
T Consensus 98 ~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P---------~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~ 168 (248)
T COG1116 98 ELRGKSKAEARERAKELLELVGLAGFEDKYP---------HQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREE 168 (248)
T ss_pred hccccchHhHHHHHHHHHHHcCCcchhhcCc---------cccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHH
Confidence 21 2345788899999998876654 689999999999999999999987
Q ss_pred ---------cccccc---eeccccc----ccEEEEEeCC
Q psy845 652 ---------KKSGVN---ITRPVTS----CDKVLVMDNG 674 (677)
Q Consensus 652 ---------~~~~~T---ILsTI~~----aDrIlVLd~G 674 (677)
...++| |+|.+.. +|||+||.+|
T Consensus 169 lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 169 LQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 234566 3666654 8999999994
No 75
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2.2e-34 Score=321.15 Aligned_cols=230 Identities=21% Similarity=0.237 Sum_probs=178.3
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+++|++++|++. .+|+|+||++++||++||+||||||||||+|+|+|+.+|++|+|.++|.++...+..+.++++|+
T Consensus 4 l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 4 LQISQGTFRLSDT--KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred EEEEeEEEEcCCe--eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 7899999999753 59999999999999999999999999999999999999999999999988876665667788999
Q ss_pred ccCCccc--c---------c------------------------------------------------------------
Q psy845 517 IPQDPVL--F---------N------------------------------------------------------------ 525 (677)
Q Consensus 517 v~q~~~l--f---------~------------------------------------------------------------ 525 (677)
++|++.+ + +
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE 161 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDE 161 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 9997531 0 0
Q ss_pred --------------------------------------------------------------------------------
Q psy845 526 -------------------------------------------------------------------------------- 525 (677)
Q Consensus 526 -------------------------------------------------------------------------------- 525 (677)
T Consensus 162 Pt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (490)
T PRK10938 162 PFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQALVAQLAHSEQLEGVQ 241 (490)
T ss_pred CcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcchhhhhhhhhhccCccc
Confidence
Q ss_pred ------------------------------------------------cccccCCCCCchhHHHHHHhhhh-cccccccc
Q psy845 526 ------------------------------------------------GIVGRTGAGKSSLLVALFRLVEL-SSGQIKID 556 (677)
Q Consensus 526 ------------------------------------------------~~~~~n~~~~~~~~~~~~~~~~~-~~g~i~~~ 556 (677)
+.+|.||||||||+++|.|+.++ ++|+|+++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~ 321 (490)
T PRK10938 242 LPEPDEPSARHALPANEPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLF 321 (490)
T ss_pred cCcccccccccccCCCCceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEe
Confidence 44578999999999999999876 79999999
Q ss_pred ccchhh-hhHHHHhhhcccccccccccc---cchhhccccC--C------CCC---hHHHHHHHHHccchh-hHhhhhcc
Q psy845 557 DFDIAS-VELETLRSRLSVIPQDPVLFN---GTIRYNLDPF--G------RCH---DTELWDALEKSHLKS-KVVTMRSK 620 (677)
Q Consensus 557 ~~~~~~-~~~~~LR~~I~~V~Qd~~LFs---gTIrENI~~~--~------~~s---deeI~~Al~~a~l~e-fI~~LP~G 620 (677)
|.++.. .+....|++++|++|++.++. .|++||+... . ... ++++.++++..++.+ ..
T Consensus 322 g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------ 395 (490)
T PRK10938 322 GRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTA------ 395 (490)
T ss_pred cccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhc------
Confidence 987643 244567889999999987642 4677776321 1 011 234556666666543 21
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------------ccccc-ce---ec---cccc--ccE
Q psy845 621 LDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------------KKSGV-NI---TR---PVTS--CDK 667 (677)
Q Consensus 621 ldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------------~~~~~-TI---Ls---TI~~--aDr 667 (677)
+. ...+||||||||++||||++++|+++ ..++. || .| .+.. ||+
T Consensus 396 -~~--~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~ 472 (490)
T PRK10938 396 -DA--PFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHR 472 (490)
T ss_pred -cC--chhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhhee
Confidence 11 45799999999999999999999976 12333 42 22 3443 799
Q ss_pred EEEEeCCeeC
Q psy845 668 VLVMDNGQAL 677 (677)
Q Consensus 668 IlVLd~GrIV 677 (677)
+++|++|+++
T Consensus 473 v~~l~~G~i~ 482 (490)
T PRK10938 473 LEFVPDGDIY 482 (490)
T ss_pred EEEecCCceE
Confidence 9999999974
No 76
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=2.9e-34 Score=286.85 Aligned_cols=176 Identities=29% Similarity=0.410 Sum_probs=140.6
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|+++.+++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+.
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--------- 72 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRG--------- 72 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcCh---------
Confidence 68999999997543469999999999999999999999999999999999999999999999998866510
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~- 594 (677)
.+...+|++++|++|++.+|. .|++||+.+..
T Consensus 73 ----------------------------------------------~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 106 (216)
T TIGR00960 73 ----------------------------------------------REIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLR 106 (216)
T ss_pred ----------------------------------------------hHHHHHHHhceEEecCccccccccHHHHHHHHHH
Confidence 023457889999999999886 69999996421
Q ss_pred --C----CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 595 --R----CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 595 --~----~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
. ..++++.++++..++.++..+. ..+||||||||++||||++++|+++
T Consensus 107 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l 177 (216)
T TIGR00960 107 IIGVPPRDANERVSAALEKVGLEGKAHAL---------PMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDI 177 (216)
T ss_pred hcCCCHHHHHHHHHHHHHHcCChhhhhCC---------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHH
Confidence 1 1234577788888876655443 3589999999999999999999976
Q ss_pred -------cccccce---ec---ccc-cccEEEEEeCCee
Q psy845 652 -------KKSGVNI---TR---PVT-SCDKVLVMDNGQA 676 (677)
Q Consensus 652 -------~~~~~TI---Ls---TI~-~aDrIlVLd~GrI 676 (677)
..+++|| .| .+. .||+|++|++|++
T Consensus 178 ~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 178 MRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 1235663 23 233 4899999999986
No 77
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-34 Score=289.83 Aligned_cols=177 Identities=31% Similarity=0.448 Sum_probs=146.9
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-|+++||+.+||++ ..+|+||||+|++||.||||||||||||||++.|.|+.+|++|+|.++|.++......
T Consensus 3 ~i~~~nl~k~yp~~-~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k------- 74 (258)
T COG3638 3 MIEVKNLSKTYPGG-HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGK------- 74 (258)
T ss_pred eEEEeeeeeecCCC-ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchH-------
Confidence 48999999999865 5699999999999999999999999999999999999999999999999999887211
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccC-
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPF- 593 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~- 593 (677)
.++.+|+++|+++|++-|- ..|+.+|+..+
T Consensus 75 ------------------------------------------------~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~gr 106 (258)
T COG3638 75 ------------------------------------------------ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGR 106 (258)
T ss_pred ------------------------------------------------HHHHHHHhceeEeccCCcccccHHHHHHHhhh
Confidence 6778888888888888887 56899998322
Q ss_pred -----------CCCChH---HHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------
Q psy845 594 -----------GRCHDT---ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------- 651 (677)
Q Consensus 594 -----------~~~sde---eI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------- 651 (677)
+-.+.+ +..+|++.+|+.+..-+ +..+|||||+||++|||||.++|+++
T Consensus 107 l~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~q---------ra~~LSGGQQQRVaIARaL~Q~pkiILADEPvas 177 (258)
T COG3638 107 LGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ---------RASTLSGGQQQRVAIARALVQQPKIILADEPVAS 177 (258)
T ss_pred cccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHH---------HhccCCcchhHHHHHHHHHhcCCCEEecCCcccc
Confidence 222333 35678888988776543 67899999999999999999999976
Q ss_pred -----------------cccccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 -----------------KKSGVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----------------~~~~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
...|.|+ +|.+ +.||||+-|++|||+
T Consensus 178 LDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~iv 227 (258)
T COG3638 178 LDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIV 227 (258)
T ss_pred cChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEE
Confidence 2356673 6655 359999999999985
No 78
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=5.2e-34 Score=294.17 Aligned_cols=173 Identities=30% Similarity=0.442 Sum_probs=143.2
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.++++|++|+|+++ ++|+|+||++++||.++|+||||||||||+|+|+|+..|.+|+|.+||.++.++
T Consensus 2 ~L~~~~ls~~y~~~--~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~---------- 69 (258)
T COG1120 2 MLEVENLSFGYGGK--PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASL---------- 69 (258)
T ss_pred eeEEEEEEEEECCe--eEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhc----------
Confidence 37899999999854 799999999999999999999999999999999999999999999999999998
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc-cccccchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP-VLFNGTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~-~LFsgTIrENI~~~~ 594 (677)
+.+++-+++|||||++ .-|.-|++|=+.+++
T Consensus 70 ------------------------------------------------~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR 101 (258)
T COG1120 70 ------------------------------------------------SPKELAKKLAYVPQSPSAPFGLTVYELVLLGR 101 (258)
T ss_pred ------------------------------------------------CHHHHhhhEEEeccCCCCCCCcEEeehHhhcC
Confidence 6777777777777774 345668888775432
Q ss_pred -----------CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------
Q psy845 595 -----------RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------ 651 (677)
Q Consensus 595 -----------~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------ 651 (677)
+.+.+.+.+|++..++.++.++ .-..||||||||+.|||||.++|+++
T Consensus 102 ~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r---------~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~ 172 (258)
T COG1120 102 YPHLGLFGRPSKEDEEIVEEALELLGLEHLADR---------PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIA 172 (258)
T ss_pred CcccccccCCCHhHHHHHHHHHHHhCcHHHhcC---------cccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHH
Confidence 1122347889999999988755 34689999999999999999999976
Q ss_pred -------------cccccce---ecc----cccccEEEEEeCCeeC
Q psy845 652 -------------KKSGVNI---TRP----VTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------------~~~~~TI---LsT----I~~aDrIlVLd~GrIV 677 (677)
..+++|| +|. .+.||++++|++|+++
T Consensus 173 ~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~ 218 (258)
T COG1120 173 HQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIV 218 (258)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEE
Confidence 1346773 443 4569999999999984
No 79
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-34 Score=319.24 Aligned_cols=229 Identities=24% Similarity=0.374 Sum_probs=174.4
Q ss_pred EEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccH-HHhhhhcccc
Q psy845 439 FKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL-ETLRSRLSVI 517 (677)
Q Consensus 439 fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~-~~~~~~i~~v 517 (677)
++|++++|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. +..+++++++
T Consensus 1 ~~nl~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CCceEEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 3689999975 369999999999999999999999999999999999999999999999999875543 3457789999
Q ss_pred cCCccccc------------------------------------------------------------------------
Q psy845 518 PQDPVLFN------------------------------------------------------------------------ 525 (677)
Q Consensus 518 ~q~~~lf~------------------------------------------------------------------------ 525 (677)
||++.++.
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllL 158 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIM 158 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99864321
Q ss_pred --------------------------------------------------------------------------------
Q psy845 526 -------------------------------------------------------------------------------- 525 (677)
Q Consensus 526 -------------------------------------------------------------------------------- 525 (677)
T Consensus 159 DEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (491)
T PRK10982 159 DEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMDKIIAMMVGRSLTQR 238 (491)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCCHHHHHHHHhCCCcccc
Confidence
Q ss_pred ---------------------------------------cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhH-
Q psy845 526 ---------------------------------------GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL- 565 (677)
Q Consensus 526 ---------------------------------------~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~- 565 (677)
+.+|.||||||||+++|.|+.+|++|+|+++|.+++..+.
T Consensus 239 ~~~~~~~~~~~~i~~~~l~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 318 (491)
T PRK10982 239 FPDKENKPGEVILEVRNLTSLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNAN 318 (491)
T ss_pred cccccCCCCCcEEEEeCcccccCcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHH
Confidence 7779999999999999999999999999999999877644
Q ss_pred HHHhhhccccccccc---ccc-cchhhcc-----ccCCC----CChHH----HHHHHHHccchhhHhhhhcccCCCCCCC
Q psy845 566 ETLRSRLSVIPQDPV---LFN-GTIRYNL-----DPFGR----CHDTE----LWDALEKSHLKSKVVTMRSKLDSDVQGD 628 (677)
Q Consensus 566 ~~LR~~I~~V~Qd~~---LFs-gTIrENI-----~~~~~----~sdee----I~~Al~~a~l~efI~~LP~GldT~v~G~ 628 (677)
+.+|+.++|+||++. +|. .|+.+|. ..... .+.++ ..++++..++.+ +..+. ...
T Consensus 319 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~--~~~ 390 (491)
T PRK10982 319 EAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKT------PGHRT--QIG 390 (491)
T ss_pred HHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccC------CCccc--ccc
Confidence 356788999999963 564 5776663 21111 11111 222333332210 11122 567
Q ss_pred CCChHHHHHHHHHHHHhccchhh------------------------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 629 QLSLGEKQLLCLARALLRKTKKK------------------------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 629 ~LSGGQRQRIaIARALLr~p~IL------------------------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
+||||||||++||||++++|+++ ...++|| .|. + +-|||+++|++|+++
T Consensus 391 ~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~ 470 (491)
T PRK10982 391 SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVA 470 (491)
T ss_pred cCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEE
Confidence 99999999999999999999976 1245663 222 2 349999999999974
No 80
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.7e-34 Score=283.10 Aligned_cols=176 Identities=31% Similarity=0.449 Sum_probs=148.6
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+|+||+.+|+++ +++|+|+||+|++||.+-++|||||||||++|+|++...|++|+|.++|.|+..+..
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~--------- 71 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKG--------- 71 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccc---------
Confidence 7899999999988 679999999999999999999999999999999999999999999999999988821
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccC--
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPF-- 593 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~-- 593 (677)
-+..-+|++||+|+||.-|. +.|+.||+++-
T Consensus 72 ----------------------------------------------~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~ 105 (223)
T COG2884 72 ----------------------------------------------REIPFLRRQIGVVFQDFRLLPDRTVYENVALPLR 105 (223)
T ss_pred ----------------------------------------------cccchhhheeeeEeeeccccccchHhhhhhhhhh
Confidence 15667899999999999887 67999999742
Q ss_pred --C---CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 594 --G---RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 594 --~---~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
+ +.-.+++.++++.+|+.+....+| .+|||||+||+|||||+..+|+++
T Consensus 106 v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP---------~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~i 176 (223)
T COG2884 106 VIGKPPREIRRRVSEVLDLVGLKHKARALP---------SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEI 176 (223)
T ss_pred ccCCCHHHHHHHHHHHHHHhccchhhhcCc---------cccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHH
Confidence 1 122355788999999999988887 589999999999999999999977
Q ss_pred -------cccccce---ec---cccc-ccEEEEEeCCeeC
Q psy845 652 -------KKSGVNI---TR---PVTS-CDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------~~~~~TI---Ls---TI~~-aDrIlVLd~GrIV 677 (677)
...|.|| +| .+.. --|++.+++|+++
T Consensus 177 m~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~ 216 (223)
T COG2884 177 MRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLV 216 (223)
T ss_pred HHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEE
Confidence 2345563 22 2333 4689999999975
No 81
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1e-33 Score=286.92 Aligned_cols=176 Identities=31% Similarity=0.424 Sum_probs=138.1
Q ss_pred EEEEeeeEEeCCCC--CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 437 IKFKNVSLRYRDNW--PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 437 I~fknVsFsY~~~~--~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
++++||+..|..+. ..+|+|+||+|++||.+||+||||||||||++++.++-.|++|+|.++|.|+..++..
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~------ 75 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEK------ 75 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHH------
Confidence 56899999996542 3699999999999999999999999999999999999999999999999999887321
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHH-hhhccccccccccc-ccchhhcccc
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL-RSRLSVIPQDPVLF-NGTIRYNLDP 592 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~L-R~~I~~V~Qd~~LF-sgTIrENI~~ 592 (677)
....+ |++||+|+|+..|. +.|++||+.+
T Consensus 76 -------------------------------------------------~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~l 106 (226)
T COG1136 76 -------------------------------------------------ELAKLRRKKIGFVFQNFNLLPDLTVLENVEL 106 (226)
T ss_pred -------------------------------------------------HHHHHHHHhEEEECccCCCCCCCCHHHHHHh
Confidence 33444 45688888888887 6799999962
Q ss_pred ----CCCC---ChHHHHHHHHHccchhhHh-hhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------
Q psy845 593 ----FGRC---HDTELWDALEKSHLKSKVV-TMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------- 651 (677)
Q Consensus 593 ----~~~~---sdeeI~~Al~~a~l~efI~-~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------- 651 (677)
.+.. .++...+.++..|+.+... . ...+||||||||+||||||+.+|+++
T Consensus 107 pl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~---------~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t 177 (226)
T COG1136 107 PLLIAGKSAGRRKRAAEELLEVLGLEDRLLKK---------KPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKT 177 (226)
T ss_pred HHHHcCCChhHHHHHHHHHHHhcCChhhhccC---------CchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHH
Confidence 2211 1344556666777765443 2 35799999999999999999999976
Q ss_pred ------------cccccce---ec---ccccccEEEEEeCCee
Q psy845 652 ------------KKSGVNI---TR---PVTSCDKVLVMDNGQA 676 (677)
Q Consensus 652 ------------~~~~~TI---Ls---TI~~aDrIlVLd~GrI 676 (677)
...|+|+ +| ....|||++.|+||++
T Consensus 178 ~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 178 AKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCee
Confidence 1235562 33 2457999999999984
No 82
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=4.5e-34 Score=321.11 Aligned_cols=147 Identities=24% Similarity=0.391 Sum_probs=104.3
Q ss_pred cccccCCCCCchhHHHHHHhhhhcccccccc-cc---chhhhh---HHHHhhhcccccccccccc-cchhhccccC-C-C
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKID-DF---DIASVE---LETLRSRLSVIPQDPVLFN-GTIRYNLDPF-G-R 595 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~-~~---~~~~~~---~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~-~-~ 595 (677)
+.+|.||||||||+++|.|+.+|++|+|+++ |. ++...+ ...+|++++||||++.+|. .|++||+... . .
T Consensus 314 ~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~ 393 (520)
T TIGR03269 314 GIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE 393 (520)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC
Confidence 4557799999999999999999999999996 53 333332 2356788999999998886 5999999631 1 1
Q ss_pred C----ChHHHHHHHHHccchhh-HhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------------
Q psy845 596 C----HDTELWDALEKSHLKSK-VVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------- 651 (677)
Q Consensus 596 ~----sdeeI~~Al~~a~l~ef-I~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------- 651 (677)
. .++++.++++..++.+. .+. -.+. ...+||||||||++||||++.+|+++
T Consensus 394 ~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~~--~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~ 468 (520)
T TIGR03269 394 LPDELARMKAVITLKMVGFDEEKAEE---ILDK--YPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTH 468 (520)
T ss_pred CCHHHHHHHHHHHHHhCCCCCccchh---hhhC--ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 1 12345556666666421 000 0122 45789999999999999999999976
Q ss_pred -----ccc-ccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 -----KKS-GVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----~~~-~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+ +.|| .|. + +-||||++|++|+++
T Consensus 469 ~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~ 507 (520)
T TIGR03269 469 SILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIV 507 (520)
T ss_pred HHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 112 5663 332 2 249999999999974
No 83
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.6e-33 Score=279.49 Aligned_cols=168 Identities=26% Similarity=0.397 Sum_probs=144.2
Q ss_pred EEEEeeeEEeCCCC---CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 437 IKFKNVSLRYRDNW---PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 437 I~fknVsFsY~~~~---~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
++++||+++|++.. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------- 66 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------- 66 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC--------------
Confidence 47899999997642 3699999999999999999999999999999999999999999999886
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccC
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPF 593 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~ 593 (677)
+++|++|++.+|++|++||+.+.
T Consensus 67 ---------------------------------------------------------~i~~~~q~~~l~~~t~~enl~~~ 89 (204)
T cd03250 67 ---------------------------------------------------------SIAYVSQEPWIQNGTIRENILFG 89 (204)
T ss_pred ---------------------------------------------------------EEEEEecCchhccCcHHHHhccC
Confidence 25778888888899999999875
Q ss_pred CCCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh--------------------
Q psy845 594 GRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK-------------------- 651 (677)
Q Consensus 594 ~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL-------------------- 651 (677)
...++++..++++.+++.+++..+|.|+++.+ .+.+||||||||++||||++++|+++
T Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ 169 (204)
T cd03250 90 KPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFEN 169 (204)
T ss_pred CCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH
Confidence 55556677888999999999999999999887 67899999999999999999999865
Q ss_pred -----cccccce------ecccccccEEEEEeCCe
Q psy845 652 -----KKSGVNI------TRPVTSCDKVLVMDNGQ 675 (677)
Q Consensus 652 -----~~~~~TI------LsTI~~aDrIlVLd~Gr 675 (677)
..+++|+ .+.++.||+|++|++|+
T Consensus 170 ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 170 CILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 1134563 23445699999999996
No 84
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=6.8e-34 Score=305.57 Aligned_cols=177 Identities=29% Similarity=0.384 Sum_probs=142.5
Q ss_pred EEEEeeeEEeCCC--CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 437 IKFKNVSLRYRDN--WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 437 I~fknVsFsY~~~--~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
|+++||+++|+++ ..++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++..
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~------ 75 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNS------ 75 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHH------
Confidence 7899999999642 24699999999999999999999999999999999999999999999999998776110
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~ 593 (677)
+...+|++|+||+|++.+| +.|++||+.+.
T Consensus 76 -------------------------------------------------~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~ 106 (343)
T TIGR02314 76 -------------------------------------------------ELTKARRQIGMIFQHFNLLSSRTVFGNVALP 106 (343)
T ss_pred -------------------------------------------------HHHHHhcCEEEEECCccccccCcHHHHHHHH
Confidence 3345688999999999999 47999999642
Q ss_pred C---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 594 G---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 594 ~---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
. ..+ ++++.++++.+++.++..+ ...+||||||||++|||||+.+|+++
T Consensus 107 ~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~---------~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~ 177 (343)
T TIGR02314 107 LELDNTPKDEIKRKVTELLALVGLGDKHDS---------YPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQ 177 (343)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchhhhC---------ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHH
Confidence 1 122 2346678888888766543 35689999999999999999999976
Q ss_pred ---------cc-cccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 ---------KK-SGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~-~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
.. .++|| .| .+ +-||||++|++|+++
T Consensus 178 ~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv 220 (343)
T TIGR02314 178 SILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELI 220 (343)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 11 25663 33 23 349999999999984
No 85
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.6e-34 Score=286.87 Aligned_cols=175 Identities=29% Similarity=0.402 Sum_probs=138.0
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+..
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~-------- 70 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEA-------- 70 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChh--------
Confidence 468999999974 3599999999999999999999999999999999999999999999999998765100
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-chhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TIrENI~~~~- 594 (677)
+...+|+.++||||++.+|.. |++||+.+..
T Consensus 71 -----------------------------------------------~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~ 103 (235)
T cd03261 71 -----------------------------------------------ELYRLRRRMGMLFQSGALFDSLTVFENVAFPLR 103 (235)
T ss_pred -----------------------------------------------hHHHHhcceEEEccCcccCCCCcHHHHHHHHHh
Confidence 235678899999999999875 9999996431
Q ss_pred ---CCCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 ---RCHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ---~~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
..+. +++.++++..++.++..+ ...+||||||||++||||++++|+++
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~ 174 (235)
T cd03261 104 EHTRLSEEEIREIVLEKLEAVGLRGAEDL---------YPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGV 174 (235)
T ss_pred hccCCCHHHHHHHHHHHHHHcCCchhhcC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHH
Confidence 1222 335566777776554322 34689999999999999999999976
Q ss_pred --------cc-cccce---ecc---cc-cccEEEEEeCCeeC
Q psy845 652 --------KK-SGVNI---TRP---VT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~-~~~TI---LsT---I~-~aDrIlVLd~GrIV 677 (677)
.. .++|| .|. +. .||||++|++|+++
T Consensus 175 l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~ 216 (235)
T cd03261 175 IDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIV 216 (235)
T ss_pred HHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEE
Confidence 11 25663 222 33 49999999999974
No 86
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-34 Score=285.62 Aligned_cols=180 Identities=28% Similarity=0.378 Sum_probs=149.9
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCc-----cEEEECCEecccccHHH
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS-----GQIKIDDFDIASVELET 509 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~-----G~I~IdG~dI~~l~~~~ 509 (677)
..++++|+++.|++. .+|+|||++|++++.+|++|||||||||+++.+.|+.|..+ |+|.+||+||.+.
T Consensus 6 ~~~~~~~l~~yYg~~--~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~---- 79 (253)
T COG1117 6 PAIEVRDLNLYYGDK--HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDP---- 79 (253)
T ss_pred ceeEecceeEEECch--hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCC----
Confidence 468999999999753 69999999999999999999999999999999999999887 8999999998664
Q ss_pred hhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhc
Q psy845 510 LRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYN 589 (677)
Q Consensus 510 ~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrEN 589 (677)
+.+.-++|+++|+|+|.|.-|..||+||
T Consensus 80 ----------------------------------------------------~~d~~~lRr~vGMVFQkPnPFp~SIydN 107 (253)
T COG1117 80 ----------------------------------------------------KVDVVELRRRVGMVFQKPNPFPMSIYDN 107 (253)
T ss_pred ----------------------------------------------------CCCHHHHHHHheeeccCCCCCCchHHHH
Confidence 1278899999999999999999999999
Q ss_pred cccCCC-------CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc----------
Q psy845 590 LDPFGR-------CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK---------- 652 (677)
Q Consensus 590 I~~~~~-------~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~---------- 652 (677)
+.++-+ .-||-++++++.|.+++.+.. .++. .+..|||||+||+||||||.-+|+++.
T Consensus 108 VayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD---rL~~--sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDP 182 (253)
T COG1117 108 VAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD---RLHK--SALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDP 182 (253)
T ss_pred HHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH---HhhC--CccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCc
Confidence 987632 123447889999999988754 3443 577899999999999999999999872
Q ss_pred -------------ccccce---eccccc----ccEEEEEeCCeeC
Q psy845 653 -------------KSGVNI---TRPVTS----CDKVLVMDNGQAL 677 (677)
Q Consensus 653 -------------~~~~TI---LsTI~~----aDrIlVLd~GrIV 677 (677)
.++-|| +|..+. +|+...+.+|++|
T Consensus 183 IsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~Lv 227 (253)
T COG1117 183 ISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELV 227 (253)
T ss_pred hhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEE
Confidence 234452 555443 6899999999875
No 87
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=1.2e-33 Score=284.34 Aligned_cols=176 Identities=31% Similarity=0.438 Sum_probs=139.7
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCC-----CCCccEEEECCEecccccHHHhh
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV-----ELSSGQIKIDDFDIASVELETLR 511 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y-----~p~~G~I~IdG~dI~~l~~~~~~ 511 (677)
|+++||+++|++. ++|+|+||++++||++||+||||||||||+++|+|++ +|++|+|.++|.++.+.+.
T Consensus 1 i~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~---- 74 (227)
T cd03260 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV---- 74 (227)
T ss_pred CEEEEEEEEcCCc--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcch----
Confidence 4789999999754 5999999999999999999999999999999999999 9999999999998866510
Q ss_pred hhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccc
Q psy845 512 SRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLD 591 (677)
Q Consensus 512 ~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~ 591 (677)
+...+|++++|++|++.+|+.|++||+.
T Consensus 75 ----------------------------------------------------~~~~~~~~i~~~~q~~~~~~~tv~e~l~ 102 (227)
T cd03260 75 ----------------------------------------------------DVLELRRRVGMVFQKPNPFPGSIYDNVA 102 (227)
T ss_pred ----------------------------------------------------HHHHHHhhEEEEecCchhccccHHHHHH
Confidence 1456788999999999999889999996
Q ss_pred cCCC---C-----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc-----------
Q psy845 592 PFGR---C-----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK----------- 652 (677)
Q Consensus 592 ~~~~---~-----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~----------- 652 (677)
+... . .++++.++++..++.+...+.+ .+.+||||||||++||||++++|+++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-------~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~ 175 (227)
T cd03260 103 YGLRLHGIKLKEELDERVEEALRKAALWDEVKDRL-------HALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPI 175 (227)
T ss_pred hHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccC-------CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 4311 1 1345667778777765543321 157999999999999999999999761
Q ss_pred ------------ccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 653 ------------KSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 653 ------------~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
.+.+|| .|. + +.||||++|++|+++
T Consensus 176 ~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 219 (227)
T cd03260 176 STAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLV 219 (227)
T ss_pred HHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEE
Confidence 122452 232 2 249999999999974
No 88
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.2e-33 Score=282.50 Aligned_cols=176 Identities=30% Similarity=0.379 Sum_probs=137.5
Q ss_pred EEEEeeeEEeCCCC--CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 437 IKFKNVSLRYRDNW--PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 437 I~fknVsFsY~~~~--~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
++++||+++|+++. .++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+..
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~------ 74 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEK------ 74 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchh------
Confidence 46899999997531 3699999999999999999999999999999999999999999999999988765100
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhH-HHHhhhccccccccccccc-chhhcccc
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL-ETLRSRLSVIPQDPVLFNG-TIRYNLDP 592 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~-~~LR~~I~~V~Qd~~LFsg-TIrENI~~ 592 (677)
+. +..|++++|++|++.+|.+ |++||+.+
T Consensus 75 -------------------------------------------------~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~ 105 (218)
T cd03255 75 -------------------------------------------------ELAAFRRRHIGFVFQSFNLLPDLTALENVEL 105 (218)
T ss_pred -------------------------------------------------HHHHHHhhcEEEEeeccccCCCCcHHHHHHH
Confidence 11 2246789999999999875 99999965
Q ss_pred CC---CC----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------------
Q psy845 593 FG---RC----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------------- 651 (677)
Q Consensus 593 ~~---~~----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------------- 651 (677)
.. .. .++++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~ 176 (218)
T cd03255 106 PLLLAGVPKKERRERAEELLERVGLGDRLNH---------YPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETG 176 (218)
T ss_pred HHhhcCCCHHHHHHHHHHHHHHcCCchhhhc---------ChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHH
Confidence 32 11 12346667777776554332 35689999999999999999999976
Q ss_pred ----------cc-cccce---ec---ccccccEEEEEeCCee
Q psy845 652 ----------KK-SGVNI---TR---PVTSCDKVLVMDNGQA 676 (677)
Q Consensus 652 ----------~~-~~~TI---Ls---TI~~aDrIlVLd~GrI 676 (677)
.. .++|| .| .+..||+|++|++|++
T Consensus 177 ~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 177 KEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 11 25673 22 3446999999999985
No 89
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.6e-33 Score=280.64 Aligned_cols=183 Identities=22% Similarity=0.340 Sum_probs=152.0
Q ss_pred EEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccc
Q psy845 438 KFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVI 517 (677)
Q Consensus 438 ~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v 517 (677)
.+.|+.|+|+++ .++++|+||++++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+.+..
T Consensus 2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~--------- 71 (218)
T cd03290 2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFE--------- 71 (218)
T ss_pred eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCccccccccc---------
Confidence 467999999865 4699999999999999999999999999999999999999999999999887654100
Q ss_pred cCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCC
Q psy845 518 PQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCH 597 (677)
Q Consensus 518 ~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~s 597 (677)
......|+.++|++|++.+|+.|++||+.+....+
T Consensus 72 ---------------------------------------------~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~ 106 (218)
T cd03290 72 ---------------------------------------------ATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFN 106 (218)
T ss_pred ---------------------------------------------ccchhhcceEEEEcCCCccccccHHHHHhhcCcCC
Confidence 01234577899999999999999999998654455
Q ss_pred hHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh------------------c-----
Q psy845 598 DTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK------------------K----- 652 (677)
Q Consensus 598 deeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL------------------~----- 652 (677)
+++..++++..++.+.+..+|.|+++.. ...+||||||||++||||++++|+++ .
T Consensus 107 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~ 186 (218)
T cd03290 107 KQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILK 186 (218)
T ss_pred HHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHH
Confidence 6667888999999999999999999877 67899999999999999999999866 1
Q ss_pred ---ccccce------ecccccccEEEEEeCCe
Q psy845 653 ---KSGVNI------TRPVTSCDKVLVMDNGQ 675 (677)
Q Consensus 653 ---~~~~TI------LsTI~~aDrIlVLd~Gr 675 (677)
..++|+ .+.+..||++++|++|+
T Consensus 187 ~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 187 FLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred HHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 123452 23356799999999985
No 90
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-33 Score=292.77 Aligned_cols=175 Identities=28% Similarity=0.394 Sum_probs=143.3
Q ss_pred cEEEEeeeEEeCCC-CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 436 TIKFKNVSLRYRDN-WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 436 ~I~fknVsFsY~~~-~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
-++++||+++|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~--------- 74 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEE--------- 74 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcC---------
Confidence 48999999999743 24599999999999999999999999999999999999999999999999998765
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhcccc
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYNLDP 592 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrENI~~ 592 (677)
+..++|++++||+|+| .+++.|++|||.+
T Consensus 75 -------------------------------------------------~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~ 105 (279)
T PRK13650 75 -------------------------------------------------NVWDIRHKIGMVFQNPDNQFVGATVEDDVAF 105 (279)
T ss_pred -------------------------------------------------cHHHHHhhceEEEcChHHhcccccHHHHHHh
Confidence 5567788999999997 3567899999975
Q ss_pred CC---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------------
Q psy845 593 FG---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------------- 651 (677)
Q Consensus 593 ~~---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------------- 651 (677)
.. ..+ ++++.++++..++.++..+. ..+||||||||++||||++++|+++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~---------~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~ 176 (279)
T PRK13650 106 GLENKGIPHEEMKERVNEALELVGMQDFKERE---------PARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGR 176 (279)
T ss_pred hHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCC---------cccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence 32 122 24567788888887665443 4689999999999999999999976
Q ss_pred ----------ccc-ccce---e---cccccccEEEEEeCCeeC
Q psy845 652 ----------KKS-GVNI---T---RPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----------~~~-~~TI---L---sTI~~aDrIlVLd~GrIV 677 (677)
..+ ++|| . ..+..||||++|++|+++
T Consensus 177 ~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~ 219 (279)
T PRK13650 177 LELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVE 219 (279)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEE
Confidence 122 6673 2 234569999999999974
No 91
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-33 Score=297.91 Aligned_cols=192 Identities=26% Similarity=0.312 Sum_probs=138.8
Q ss_pred ccEEEEeeeEEeCCC---CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhh
Q psy845 435 GTIKFKNVSLRYRDN---WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR 511 (677)
Q Consensus 435 g~I~fknVsFsY~~~---~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~ 511 (677)
.-|+++||+|+|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+.-
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~----- 94 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKK----- 94 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccc-----
Confidence 458999999999753 135999999999999999999999999999999999999999999999999985420
Q ss_pred hhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhc
Q psy845 512 SRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYN 589 (677)
Q Consensus 512 ~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrEN 589 (677)
..++ +.. .+ +.. ...+.+.+|++++||+|+| .+|++|++||
T Consensus 95 -----~~~~--~~~-------------------~~---------~~~--~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~en 137 (320)
T PRK13631 95 -----NNHE--LIT-------------------NP---------YSK--KIKNFKELRRRVSMVFQFPEYQLFKDTIEKD 137 (320)
T ss_pred -----cccc--ccc-------------------cc---------ccc--ccchHHHHHhcEEEEEECchhccccchHHHH
Confidence 0000 000 00 000 0013567899999999998 7999999999
Q ss_pred cccCC---CCChHHH----HHHHHHccch-hhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------
Q psy845 590 LDPFG---RCHDTEL----WDALEKSHLK-SKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------- 651 (677)
Q Consensus 590 I~~~~---~~sdeeI----~~Al~~a~l~-efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------- 651 (677)
+.++. ..++++. .++++..++. ++. +. .+.+||||||||++|||||+++|+++
T Consensus 138 i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-------~~--~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD 208 (320)
T PRK13631 138 IMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYL-------ER--SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLD 208 (320)
T ss_pred HHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHh-------cC--CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCC
Confidence 97542 1233332 2233333332 111 11 57899999999999999999999976
Q ss_pred --------------cccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 --------------KKSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------------~~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+ +.||||+||++|+++
T Consensus 209 ~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~ 255 (320)
T PRK13631 209 PKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKIL 255 (320)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 1246673 23 23 459999999999974
No 92
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3e-33 Score=277.68 Aligned_cols=169 Identities=28% Similarity=0.399 Sum_probs=136.0
Q ss_pred EEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccc
Q psy845 438 KFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVI 517 (677)
Q Consensus 438 ~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v 517 (677)
+++|++++|++. .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~------------- 66 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA------------- 66 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh-------------
Confidence 367999999752 369999999999999999999999999999999999999999999999987632
Q ss_pred cCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhccccCCC
Q psy845 518 PQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYNLDPFGR 595 (677)
Q Consensus 518 ~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrENI~~~~~ 595 (677)
...|++++|++|++ .+|+.|++||+.+...
T Consensus 67 ------------------------------------------------~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~ 98 (205)
T cd03226 67 ------------------------------------------------KERRKSIGYVMQDVDYQLFTDSVREELLLGLK 98 (205)
T ss_pred ------------------------------------------------HHhhcceEEEecChhhhhhhccHHHHHhhhhh
Confidence 23566788888887 4678899999975321
Q ss_pred ---CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------------
Q psy845 596 ---CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------------- 651 (677)
Q Consensus 596 ---~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------------- 651 (677)
..++++.++++..++.++..+. ..+||||||||++||||++++|+++
T Consensus 99 ~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 169 (205)
T cd03226 99 ELDAGNEQAETVLKDLDLYALKERH---------PLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELI 169 (205)
T ss_pred hcCccHHHHHHHHHHcCCchhcCCC---------chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 1235678888998887665443 3589999999999999999999976
Q ss_pred ---cccccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 ---KKSGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---~~~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+. -||+|++|++|++|
T Consensus 170 ~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 170 RELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 1235663 22 233 49999999999986
No 93
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-33 Score=290.86 Aligned_cols=174 Identities=24% Similarity=0.366 Sum_probs=142.8
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-++++||+++|+++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~---------- 72 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAE---------- 72 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCC----------
Confidence 48999999999743 3599999999999999999999999999999999999999999999999998765
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhccccC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYNLDPF 593 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrENI~~~ 593 (677)
+..++|++++||+|+| .++..|++||+.++
T Consensus 73 ------------------------------------------------~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~ 104 (274)
T PRK13647 73 ------------------------------------------------NEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFG 104 (274)
T ss_pred ------------------------------------------------CHHHHHhhEEEEecChhhhhccCcHHHHHHhh
Confidence 5567788899999998 67889999999753
Q ss_pred C---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 594 G---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 594 ~---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
. ..+ ++++.++++..++.++..+. ..+||||||||++||||++++|+++
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~---------~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~ 175 (274)
T PRK13647 105 PVNMGLDKDEVERRVEEALKAVRMWDFRDKP---------PYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQE 175 (274)
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCCHHHhcCC---------hhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHH
Confidence 2 122 24567788888887665443 3589999999999999999999976
Q ss_pred ---------cccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 ---------KKSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+ +.||||++|++|+++
T Consensus 176 ~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~ 217 (274)
T PRK13647 176 TLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVL 217 (274)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 1235673 22 33 459999999999974
No 94
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=4.1e-33 Score=278.61 Aligned_cols=173 Identities=28% Similarity=0.435 Sum_probs=138.0
Q ss_pred EEEEeeeEEeCCCC--CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 437 IKFKNVSLRYRDNW--PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 437 I~fknVsFsY~~~~--~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
++++||+++|++.. +++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++...
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--------- 72 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKE--------- 72 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccC---------
Confidence 67999999997542 2699999999999999999999999999999999999999999999999987542
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~ 593 (677)
..++|++++|+||++.+|. .|++||+.+.
T Consensus 73 --------------------------------------------------~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 102 (218)
T cd03266 73 --------------------------------------------------PAEARRRLGFVSDSTGLYDRLTARENLEYF 102 (218)
T ss_pred --------------------------------------------------HHHHHhhEEEecCCcccCcCCCHHHHHHHH
Confidence 2456788999999998887 4999999642
Q ss_pred C---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 594 G---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 594 ~---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
. ..+ ++++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~ 173 (218)
T cd03266 103 AGLYGLKGDELTARLEELADRLGMEELLDR---------RVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATR 173 (218)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCHHHHhh---------hhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHH
Confidence 1 111 3445667777777655433 46789999999999999999999976
Q ss_pred ---------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 ---------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+++|| .|. + ..||||++|++|+++
T Consensus 174 ~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~ 215 (218)
T cd03266 174 ALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVV 215 (218)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEe
Confidence 1235663 222 2 348999999999974
No 95
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-33 Score=283.94 Aligned_cols=177 Identities=24% Similarity=0.349 Sum_probs=143.5
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC---CCccEEEECCEecccccHHHhhh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE---LSSGQIKIDDFDIASVELETLRS 512 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~---p~~G~I~IdG~dI~~l~~~~~~~ 512 (677)
.|+++|++++|++ +++|+|+||++++||++||+||||||||||+++|+|+++ |++|+|.+||+++.+.
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~------- 72 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQ------- 72 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccC-------
Confidence 3789999999975 369999999999999999999999999999999999985 6999999999998765
Q ss_pred hcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcccc
Q psy845 513 RLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDP 592 (677)
Q Consensus 513 ~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~ 592 (677)
+....|++++|+||++.+|+.|++||+.+
T Consensus 73 ---------------------------------------------------~~~~~~~~i~~~~q~~~l~~~tv~eni~~ 101 (246)
T PRK14269 73 ---------------------------------------------------DVVALRKNVGMVFQQPNVFVKSIYENISY 101 (246)
T ss_pred ---------------------------------------------------CHHHHhhhEEEEecCCccccccHHHHhhh
Confidence 55567889999999999999999999965
Q ss_pred CCC---------CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------
Q psy845 593 FGR---------CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------ 651 (677)
Q Consensus 593 ~~~---------~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------ 651 (677)
+.. ..++++.++++..++.+++..+. +. .+.+||||||||++||||++++|+++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---~~--~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~ 176 (246)
T PRK14269 102 APKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKL---KQ--NALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPI 176 (246)
T ss_pred HHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHh---cC--CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 311 11234667888888876655432 11 56799999999999999999999976
Q ss_pred -----------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 -----------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+++|+ .|. + +.||||++|++|+++
T Consensus 177 ~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 220 (246)
T PRK14269 177 SSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELI 220 (246)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEE
Confidence 1235562 332 2 359999999999974
No 96
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3.6e-33 Score=277.69 Aligned_cols=171 Identities=30% Similarity=0.409 Sum_probs=135.7
Q ss_pred EEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccc
Q psy845 438 KFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVI 517 (677)
Q Consensus 438 ~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v 517 (677)
+++|++++|+++.+++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~------------ 68 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKL------------ 68 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccC------------
Confidence 36899999976324699999999999999999999999999999999999999999999999988765
Q ss_pred cCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhccccCC-
Q psy845 518 PQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYNLDPFG- 594 (677)
Q Consensus 518 ~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrENI~~~~- 594 (677)
+...+|++++|+||++ .+++.|++||+.+..
T Consensus 69 ----------------------------------------------~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~ 102 (211)
T cd03225 69 ----------------------------------------------SLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLE 102 (211)
T ss_pred ----------------------------------------------CHHHHHhhceEEecChhhhcCCCcHHHHHHHHHH
Confidence 5566788899999998 367889999996421
Q ss_pred --CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 595 --RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 595 --~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
..+ ++++.++++..++.++..+ ...+||||||||++||||++++|+++
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~ 173 (211)
T cd03225 103 NLGLPEEEIEERVEEALELVGLEGLRDR---------SPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRREL 173 (211)
T ss_pred HcCCCHHHHHHHHHHHHHHcCcHhhhcC---------CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 112 2345566777766554332 35789999999999999999999976
Q ss_pred -------cccccce---ec---cccc-ccEEEEEeCCe
Q psy845 652 -------KKSGVNI---TR---PVTS-CDKVLVMDNGQ 675 (677)
Q Consensus 652 -------~~~~~TI---Ls---TI~~-aDrIlVLd~Gr 675 (677)
..+++|+ .| .+.+ ||+|++|++|+
T Consensus 174 ~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 174 LELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 1135563 22 2344 99999999996
No 97
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-33 Score=281.68 Aligned_cols=178 Identities=28% Similarity=0.374 Sum_probs=139.0
Q ss_pred cEEEEeeeEEeCCCC--CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 436 TIKFKNVSLRYRDNW--PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 436 ~I~fknVsFsY~~~~--~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
-++++||+++|+++. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~----- 79 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSA----- 79 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHH-----
Confidence 389999999997532 3699999999999999999999999999999999999999999999999998776110
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHh-hhccccccccccccc-chhhccc
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR-SRLSVIPQDPVLFNG-TIRYNLD 591 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR-~~I~~V~Qd~~LFsg-TIrENI~ 591 (677)
...++| +.++|++|++.+|.. |++||+.
T Consensus 80 --------------------------------------------------~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 109 (233)
T PRK11629 80 --------------------------------------------------AKAELRNQKLGFIYQFHHLLPDFTALENVA 109 (233)
T ss_pred --------------------------------------------------HHHHHHhccEEEEecCcccCCCCCHHHHHH
Confidence 122343 679999999988864 9999996
Q ss_pred cC---CCCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------
Q psy845 592 PF---GRCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------- 651 (677)
Q Consensus 592 ~~---~~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------- 651 (677)
+. ...+ ++++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~ 180 (233)
T PRK11629 110 MPLLIGKKKPAEINSRALEMLAAVGLEHRANH---------RPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARN 180 (233)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCchhhhC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 42 1111 2346667777776544322 35689999999999999999999976
Q ss_pred ---------c--c-cccce------ecccccccEEEEEeCCeeC
Q psy845 652 ---------K--K-SGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~--~-~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
. . .++|| .+.+..+|++++|++|+++
T Consensus 181 ~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~ 224 (233)
T PRK11629 181 ADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLT 224 (233)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEE
Confidence 1 1 35663 2335568999999999984
No 98
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.4e-33 Score=281.48 Aligned_cols=176 Identities=31% Similarity=0.447 Sum_probs=137.2
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++||+++|+++ +++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+..
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~-------- 71 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGK-------- 71 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHh--------
Confidence 4689999999752 3699999999999999999999999999999999999999999999999988765100
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~- 594 (677)
+...+|+.++|+||++.+|. .|++||+.+..
T Consensus 72 -----------------------------------------------~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 104 (241)
T cd03256 72 -----------------------------------------------ALRQLRRQIGMIFQQFNLIERLSVLENVLSGRL 104 (241)
T ss_pred -----------------------------------------------HHHHHHhccEEEcccCcccccCcHHHHHHhhhc
Confidence 24567888999999998886 69999996421
Q ss_pred --------------CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------
Q psy845 595 --------------RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------- 651 (677)
Q Consensus 595 --------------~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------- 651 (677)
+..++++.++++..++.+... . .+.+||||||||++||||++++|+++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~--~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 175 (241)
T cd03256 105 GRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAY-------Q--RADQLSGGQQQRVAIARALMQQPKLILADEPVASL 175 (241)
T ss_pred ccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhC-------C--CcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence 011234555666666644321 1 56799999999999999999999976
Q ss_pred ---------------cc-cccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 ---------------KK-SGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------------~~-~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
.. .++|| .| .+. .||+|++|++|+++
T Consensus 176 D~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~ 224 (241)
T cd03256 176 DPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIV 224 (241)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 11 25663 22 233 59999999999974
No 99
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=4.9e-33 Score=276.96 Aligned_cols=175 Identities=27% Similarity=0.386 Sum_probs=138.1
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|+++ +++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+..
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~-------- 71 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGR-------- 71 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHH--------
Confidence 4689999999754 3699999999999999999999999999999999999999999999999988665100
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~- 594 (677)
+....|+.++|++|++.+|. .|++||+.+..
T Consensus 72 -----------------------------------------------~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~ 104 (214)
T cd03292 72 -----------------------------------------------AIPYLRRKIGVVFQDFRLLPDRNVYENVAFALE 104 (214)
T ss_pred -----------------------------------------------HHHHHHHheEEEecCchhccCCcHHHHHHHHHH
Confidence 23457889999999999987 59999996431
Q ss_pred --CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 595 --RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 595 --~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
..+ ++++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~ 175 (214)
T cd03292 105 VTGVPPREIRKRVPAALELVGLSHKHRA---------LPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEI 175 (214)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCHHHhhC---------ChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHH
Confidence 111 2346667777777654433 34689999999999999999999976
Q ss_pred -------cccccce---ec---ccc-cccEEEEEeCCee
Q psy845 652 -------KKSGVNI---TR---PVT-SCDKVLVMDNGQA 676 (677)
Q Consensus 652 -------~~~~~TI---Ls---TI~-~aDrIlVLd~GrI 676 (677)
..+++|| .| .+. -||+|++|++|++
T Consensus 176 ~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 176 MNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 1235663 22 233 3899999999985
No 100
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=4.7e-33 Score=278.55 Aligned_cols=173 Identities=27% Similarity=0.396 Sum_probs=135.9
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++||+++|+++.+++|+|+||++++||.+||+||||||||||+++|+|+++|++|+|.+||+++.+.
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----------- 69 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD----------- 69 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-----------
Confidence 478999999975324699999999999999999999999999999999999999999999999887543
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~- 594 (677)
. .++|++++|++|++.+| +.|++||+.+..
T Consensus 70 -----------------------------------------------~-~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~ 101 (220)
T cd03263 70 -----------------------------------------------R-KAARQSLGYCPQFDALFDELTVREHLRFYAR 101 (220)
T ss_pred -----------------------------------------------h-HHHhhhEEEecCcCCccccCCHHHHHHHHHH
Confidence 2 45678899999999888 679999996421
Q ss_pred --CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 595 --RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 595 --~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
..+ ++++.++++..++.+.. ++ ...+||||||||++||||++++|+++
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~--~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l 172 (220)
T cd03263 102 LKGLPKSEIKEEVELLLRVLGLTDKA-------NK--RARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAI 172 (220)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCHHHH-------hC--hhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHH
Confidence 112 23455666666665433 22 34689999999999999999999976
Q ss_pred ------cccccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 ------KKSGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------~~~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
..+++|+ .| .+. .||+|++|++|+++
T Consensus 173 ~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~ 211 (220)
T cd03263 173 WDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLR 211 (220)
T ss_pred HHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEE
Confidence 1234563 22 233 49999999999974
No 101
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=6.6e-33 Score=277.69 Aligned_cols=177 Identities=30% Similarity=0.403 Sum_probs=137.0
Q ss_pred EEEEeeeEEeCCCC--CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 437 IKFKNVSLRYRDNW--PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 437 I~fknVsFsY~~~~--~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
++++||+++|+++. .++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+..
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~------ 75 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSN------ 75 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHh------
Confidence 68899999997531 3699999999999999999999999999999999999999999999999998765110
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHh-hhcccccccccccc-cchhhcccc
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR-SRLSVIPQDPVLFN-GTIRYNLDP 592 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR-~~I~~V~Qd~~LFs-gTIrENI~~ 592 (677)
+...+| +.++|++|++.+|. .|++||+.+
T Consensus 76 -------------------------------------------------~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~ 106 (221)
T TIGR02211 76 -------------------------------------------------ERAKLRNKKLGFIYQFHHLLPDFTALENVAM 106 (221)
T ss_pred -------------------------------------------------HHHHHHHhcEEEEecccccCCCCcHHHHHHH
Confidence 222344 67999999999885 699999964
Q ss_pred C---CCCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------------
Q psy845 593 F---GRCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------------- 651 (677)
Q Consensus 593 ~---~~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------------- 651 (677)
. ...+ ++++.++++..++++...+ ...+||||||||++||||++++|+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~ 177 (221)
T TIGR02211 107 PLLIGKKSVKEAKERAYEMLEKVGLEHRINH---------RPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNA 177 (221)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCChhhhhC---------ChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHH
Confidence 2 1111 2235556666665543322 35789999999999999999999976
Q ss_pred ----------cc-cccce------ecccccccEEEEEeCCeeC
Q psy845 652 ----------KK-SGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----------~~-~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
.. .++|| +..+..||+|++|++|+++
T Consensus 178 ~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 178 KIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 11 25663 2234569999999999985
No 102
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.1e-33 Score=281.54 Aligned_cols=173 Identities=28% Similarity=0.404 Sum_probs=140.2
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.++++|++++|++. ++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~---------- 70 (241)
T PRK14250 3 EIEFKEVSYSSFGK--EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTI---------- 70 (241)
T ss_pred eEEEEeEEEEeCCe--eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhc----------
Confidence 48899999999653 599999999999999999999999999999999999999999999999988665
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGR 595 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~ 595 (677)
+..++|+.++|++|++.+|+.|++||+.+...
T Consensus 71 ------------------------------------------------~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~ 102 (241)
T PRK14250 71 ------------------------------------------------DVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPM 102 (241)
T ss_pred ------------------------------------------------ChHHhhhcEEEEecCchhchhhHHHHHhcchh
Confidence 55567889999999999999999999975321
Q ss_pred ---CChHHHHHHHHHccch-hhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------------------
Q psy845 596 ---CHDTELWDALEKSHLK-SKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------------------- 651 (677)
Q Consensus 596 ---~sdeeI~~Al~~a~l~-efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------------------- 651 (677)
..++++.++++..++. +... . ...+||||||||++||||++++|+++
T Consensus 103 ~~~~~~~~~~~~l~~~~l~~~~~~-------~--~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 173 (241)
T PRK14250 103 LKGEKNVDVEYYLSIVGLNKEYAT-------R--DVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEEL 173 (241)
T ss_pred hcCcHHHHHHHHHHHcCCCHHHhh-------C--CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 2234566667776664 2221 1 46789999999999999999999976
Q ss_pred ----cc-cccce---ecc---cc-cccEEEEEeCCeeC
Q psy845 652 ----KK-SGVNI---TRP---VT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----~~-~~~TI---LsT---I~-~aDrIlVLd~GrIV 677 (677)
.. .++|| .|. +. .||+|++|++|+++
T Consensus 174 l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 211 (241)
T PRK14250 174 IVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILV 211 (241)
T ss_pred HHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEE
Confidence 11 25673 232 33 49999999999974
No 103
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=5.1e-33 Score=277.21 Aligned_cols=174 Identities=32% Similarity=0.433 Sum_probs=138.7
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|+++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+..
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~-------- 72 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGR-------- 72 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHH--------
Confidence 6899999999533 4699999999999999999999999999999999999999999999999998765100
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~- 594 (677)
+...+|++++|++|++.+|. .|++||+.+..
T Consensus 73 -----------------------------------------------~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 105 (214)
T TIGR02673 73 -----------------------------------------------QLPLLRRRIGVVFQDFRLLPDRTVYENVALPLE 105 (214)
T ss_pred -----------------------------------------------HHHHHHhheEEEecChhhccCCcHHHHHHHHHH
Confidence 23457888999999999985 69999996421
Q ss_pred --C----CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 595 --R----CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 595 --~----~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
. ..++++.++++..++.+...+. ..+||||||||++||||++++|+++
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l 176 (214)
T TIGR02673 106 VRGKKEREIQRRVGAALRQVGLEHKADAF---------PEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERI 176 (214)
T ss_pred HcCCCHHHHHHHHHHHHHHcCChhhhhCC---------hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHH
Confidence 1 1234567788888876654432 3589999999999999999999976
Q ss_pred -------cccccce---ecc---cc-cccEEEEEeCCe
Q psy845 652 -------KKSGVNI---TRP---VT-SCDKVLVMDNGQ 675 (677)
Q Consensus 652 -------~~~~~TI---LsT---I~-~aDrIlVLd~Gr 675 (677)
..+++|| .|. +. -||+|++|++|+
T Consensus 177 ~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 177 LDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 1235663 232 33 389999999996
No 104
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=6.6e-33 Score=295.69 Aligned_cols=233 Identities=30% Similarity=0.505 Sum_probs=186.1
Q ss_pred cEEEEeeeEEeC--CCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CccEEEECCEecccccHH
Q psy845 436 TIKFKNVSLRYR--DNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIASVELE 508 (677)
Q Consensus 436 ~I~fknVsFsY~--~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-----~~G~I~IdG~dI~~l~~~ 508 (677)
-++++|++.+|. +....++|||||+|++||++|+||+||||||--.+.++|+.+- -+|+|.+||.|+-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 478899988885 3345799999999999999999999999999999999999854 368999999999888877
Q ss_pred Hhhh----hcccccCCcc-----ccc------------------------------------------------------
Q psy845 509 TLRS----RLSVIPQDPV-----LFN------------------------------------------------------ 525 (677)
Q Consensus 509 ~~~~----~i~~v~q~~~-----lf~------------------------------------------------------ 525 (677)
++|+ +|++|+|||. +++
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQR 165 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQR 165 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhH
Confidence 7765 8999999998 333
Q ss_pred --------------------------------------------------------------------------------
Q psy845 526 -------------------------------------------------------------------------------- 525 (677)
Q Consensus 526 -------------------------------------------------------------------------------- 525 (677)
T Consensus 166 VMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~l 245 (534)
T COG4172 166 VMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETL 245 (534)
T ss_pred HHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHH
Confidence
Q ss_pred -----------------------------------------------------------------------cccccCCCC
Q psy845 526 -----------------------------------------------------------------------GIVGRTGAG 534 (677)
Q Consensus 526 -----------------------------------------------------------------------~~~~~n~~~ 534 (677)
|.||++|||
T Consensus 246 F~~PqHpYTr~Ll~aeP~g~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSG 325 (534)
T COG4172 246 FAAPQHPYTRKLLAAEPSGDPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSG 325 (534)
T ss_pred hhCCCChHHHHHHhcCCCCCCCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCC
Confidence 899999999
Q ss_pred CchhHHHHHHhhhhccccccccccchhhhhHH---HHhhhccccccccccc---ccchhhccc----cCC-CC----ChH
Q psy845 535 KSSLLVALFRLVELSSGQIKIDDFDIASVELE---TLRSRLSVIPQDPVLF---NGTIRYNLD----PFG-RC----HDT 599 (677)
Q Consensus 535 ~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~---~LR~~I~~V~Qd~~LF---sgTIrENI~----~~~-~~----sde 599 (677)
||||-.||+||.+++ |+|+++|+|+...+.+ -+|+++-+|+|||+=- ..||.+-|. ..+ .. .++
T Consensus 326 KsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~ 404 (534)
T COG4172 326 KSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQ 404 (534)
T ss_pred cchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHH
Confidence 999999999999999 9999999999988655 4689999999999731 235544442 222 22 245
Q ss_pred HHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhcc-------------------------c
Q psy845 600 ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKKK-------------------------S 654 (677)
Q Consensus 600 eI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~~-------------------------~ 654 (677)
.+.+|++++|++.-... - ...++|||||||||||||++-+|+.+.. .
T Consensus 405 rv~~aL~EVGLDp~~r~------R--YPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~ 476 (534)
T COG4172 405 RVIEALEEVGLDPATRN------R--YPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKH 476 (534)
T ss_pred HHHHHHHHcCCChhHhh------c--CCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHh
Confidence 57889999988753321 0 4689999999999999999999985511 1
Q ss_pred ccc---e---ecccc-cccEEEEEeCCeeC
Q psy845 655 GVN---I---TRPVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 655 ~~T---I---LsTI~-~aDrIlVLd~GrIV 677 (677)
+.+ | ++.++ -||+++||++||||
T Consensus 477 ~LsYLFISHDL~VvrAl~~~viVm~~GkiV 506 (534)
T COG4172 477 GLSYLFISHDLAVVRALCHRVIVMRDGKIV 506 (534)
T ss_pred CCeEEEEeccHHHHHHhhceEEEEeCCEEe
Confidence 112 3 23333 39999999999996
No 105
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=8.6e-33 Score=280.62 Aligned_cols=176 Identities=32% Similarity=0.439 Sum_probs=137.1
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++||+++|+++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+..
T Consensus 2 l~~~~l~~~~~~~-~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~-------- 72 (243)
T TIGR02315 2 LEVENLSKVYPNG-KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGK-------- 72 (243)
T ss_pred eEEEeeeeecCCC-cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHH--------
Confidence 6789999999722 3699999999999999999999999999999999999999999999999988665100
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFGR 595 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~~ 595 (677)
+...+|++++|+||++.+|. .|++||+.+...
T Consensus 73 -----------------------------------------------~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~ 105 (243)
T TIGR02315 73 -----------------------------------------------KLRKLRRRIGMIFQHYNLIERLTVLENVLHGRL 105 (243)
T ss_pred -----------------------------------------------HHHHHHhheEEEcCCCcccccccHHHHHhhccc
Confidence 23457888999999998885 699999964210
Q ss_pred ---------------CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------
Q psy845 596 ---------------CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------- 651 (677)
Q Consensus 596 ---------------~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------- 651 (677)
..++++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~L 176 (243)
T TIGR02315 106 GYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQ---------RADQLSGGQQQRVAIARALAQQPDLILADEPIASL 176 (243)
T ss_pred ccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcC---------CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 112345566666666544322 46799999999999999999999976
Q ss_pred ---------------cc-cccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 ---------------KK-SGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------------~~-~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
.. .++|| .| .+ +.||+|++|++|+++
T Consensus 177 D~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~ 225 (243)
T TIGR02315 177 DPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIV 225 (243)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 11 25663 22 23 349999999999974
No 106
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=6.5e-33 Score=280.37 Aligned_cols=172 Identities=27% Similarity=0.416 Sum_probs=132.1
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----------- 67 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGL----------- 67 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCC-----------
Confidence 468999999974 3599999999999999999999999999999999999999999999999998765
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHH-Hhhhccccccccccccc-chhhccccCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET-LRSRLSVIPQDPVLFNG-TIRYNLDPFG 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-LR~~I~~V~Qd~~LFsg-TIrENI~~~~ 594 (677)
+... .|+.++|+||++.+|.+ |++||+.+..
T Consensus 68 -----------------------------------------------~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~ 100 (236)
T cd03219 68 -----------------------------------------------PPHEIARLGIGRTFQIPRLFPELTVLENVMVAA 100 (236)
T ss_pred -----------------------------------------------CHHHHHhcCEEEEecccccccCCCHHHHHHHHH
Confidence 3333 35679999999988875 9999996432
Q ss_pred C-C------------C----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------
Q psy845 595 R-C------------H----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------ 651 (677)
Q Consensus 595 ~-~------------s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------ 651 (677)
. . . .+++.++++..++.+.. +. ...+||||||||++||||++++|+++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~--~~~~LSgG~~qrv~la~al~~~p~llllDEPt 171 (236)
T cd03219 101 QARTGSGLLLARARREEREARERAEELLERVGLADLA-------DR--PAGELSYGQQRRLEIARALATDPKLLLLDEPA 171 (236)
T ss_pred hhccccccccccccccHHHHHHHHHHHHHHcCccchh-------hC--ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 1 0 0 11233444444443221 11 46799999999999999999999876
Q ss_pred ------------------cccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 ------------------KKSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------------~~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
...++|| .| .+ ..||+|++|++|+++
T Consensus 172 ~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~ 222 (236)
T cd03219 172 AGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVI 222 (236)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEE
Confidence 1145663 22 23 349999999999974
No 107
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.4e-33 Score=276.16 Aligned_cols=170 Identities=28% Similarity=0.396 Sum_probs=135.1
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|++ +++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~----------- 67 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGV----------- 67 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcC-----------
Confidence 468999999975 3699999999999999999999999999999999999999999999999988654
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFGR 595 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~~ 595 (677)
+ ..+++++|+||++.+|. .|++||+.+...
T Consensus 68 -----------------------------------------------~--~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~ 98 (213)
T cd03259 68 -----------------------------------------------P--PERRNIGMVFQDYALFPHLTVAENIAFGLK 98 (213)
T ss_pred -----------------------------------------------c--hhhccEEEEcCchhhccCCcHHHHHHhHHH
Confidence 2 13567899999988885 699999964211
Q ss_pred ---CC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 596 ---CH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 596 ---~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
.+ ++++.++++..++.++..+ ...+||||||||++||||++++|+++
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l 169 (213)
T cd03259 99 LRGVPKAEIRARVRELLELVGLEGLLNR---------YPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREEL 169 (213)
T ss_pred HcCCCHHHHHHHHHHHHHHcCChhhhhc---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 11 2345667777777655443 34689999999999999999999976
Q ss_pred -----c--c-cccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 -----K--K-SGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----~--~-~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
. . .++|| .|. + ..||+|++|++|+++
T Consensus 170 ~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~ 210 (213)
T cd03259 170 REELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIV 210 (213)
T ss_pred HHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEE
Confidence 1 1 25663 232 2 349999999999974
No 108
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-32 Score=288.71 Aligned_cols=176 Identities=30% Similarity=0.433 Sum_probs=139.2
Q ss_pred EEEEeeeEEeCCCC---CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 437 IKFKNVSLRYRDNW---PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 437 I~fknVsFsY~~~~---~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
++++||+++|++.. +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~------- 75 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKK------- 75 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcC-------
Confidence 78999999997532 36999999999999999999999999999999999999999999999999986640
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhccc
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYNLD 591 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrENI~ 591 (677)
.+...+|++++||||+| .+|+.|++||+.
T Consensus 76 -------------------------------------------------~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~ 106 (287)
T PRK13637 76 -------------------------------------------------VKLSDIRKKVGLVFQYPEYQLFEETIEKDIA 106 (287)
T ss_pred -------------------------------------------------ccHHHHhhceEEEecCchhccccccHHHHHH
Confidence 02346788999999987 578899999997
Q ss_pred cCC---CCChH----HHHHHHHHccch--hhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 592 PFG---RCHDT----ELWDALEKSHLK--SKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 592 ~~~---~~sde----eI~~Al~~a~l~--efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
++. ..+++ ++.++++.+++. ++ .|. ...+||||||||++|||||+.+|+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-------~~~--~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~ 177 (287)
T PRK13637 107 FGPINLGLSEEEIENRVKRAMNIVGLDYEDY-------KDK--SPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDP 177 (287)
T ss_pred hHHHHCCCCHHHHHHHHHHHHHHcCCCchhh-------ccC--CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCH
Confidence 532 12333 356677777764 22 122 46799999999999999999999976
Q ss_pred -------------cc-cccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 -------------KK-SGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------------~~-~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
.. .++|| .| .+ +.||||++|++|+++
T Consensus 178 ~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~ 224 (287)
T PRK13637 178 KGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCE 224 (287)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 11 26673 22 23 359999999999974
No 109
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-32 Score=287.12 Aligned_cols=175 Identities=25% Similarity=0.384 Sum_probs=143.4
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-++++||+++|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~---------- 74 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEE---------- 74 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcC----------
Confidence 3899999999975445699999999999999999999999999999999999999999999999998766
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhccccC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYNLDPF 593 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrENI~~~ 593 (677)
+...+|+.++|++|++ .+++.|++||+.+.
T Consensus 75 ------------------------------------------------~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~ 106 (279)
T PRK13635 75 ------------------------------------------------TVWDVRRQVGMVFQNPDNQFVGATVQDDVAFG 106 (279)
T ss_pred ------------------------------------------------cHHHHhhheEEEEeCHHHhcccccHHHHHhhh
Confidence 5556778899999998 46678999999753
Q ss_pred C---CCCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 594 G---RCHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 594 ~---~~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
. ..+. +++.++++..++.+++... ..+||||||||++||||++++|+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~---------~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~ 177 (279)
T PRK13635 107 LENIGVPREEMVERVDQALRQVGMEDFLNRE---------PHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRR 177 (279)
T ss_pred HhhCCCCHHHHHHHHHHHHHHcCChhhhhCC---------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 1 1222 3467778888887766554 3589999999999999999999976
Q ss_pred ---------ccc-ccce------ecccccccEEEEEeCCeeC
Q psy845 652 ---------KKS-GVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~~-~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
..+ ++|| ...+..||||++|++|+++
T Consensus 178 ~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~ 219 (279)
T PRK13635 178 EVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEIL 219 (279)
T ss_pred HHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEE
Confidence 112 5673 2235569999999999974
No 110
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=7.5e-33 Score=277.14 Aligned_cols=173 Identities=27% Similarity=0.453 Sum_probs=132.2
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+++||+++|++. ++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----------- 67 (222)
T cd03224 1 LEVENLNAGYGKS--QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGL----------- 67 (222)
T ss_pred CEEeeEEeecCCe--eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCC-----------
Confidence 4789999999753 699999999999999999999999999999999999999999999999988665
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHH-Hhhhccccccccccccc-chhhccccCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET-LRSRLSVIPQDPVLFNG-TIRYNLDPFG 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-LR~~I~~V~Qd~~LFsg-TIrENI~~~~ 594 (677)
+..+ .|++++|+||++.+|.+ |++||+.+..
T Consensus 68 -----------------------------------------------~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~ 100 (222)
T cd03224 68 -----------------------------------------------PPHERARAGIGYVPEGRRIFPELTVEENLLLGA 100 (222)
T ss_pred -----------------------------------------------CHHHHHhcCeEEeccccccCCCCcHHHHHHHHh
Confidence 3333 46779999999999876 9999997532
Q ss_pred CCC-hH----HHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------
Q psy845 595 RCH-DT----ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------ 651 (677)
Q Consensus 595 ~~s-de----eI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------ 651 (677)
... .+ ++.++++.. ..+++.+++ ...+||||||||++||||++++|+++
T Consensus 101 ~~~~~~~~~~~~~~~l~~~------~~l~~~~~~--~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~ 172 (222)
T cd03224 101 YARRRAKRKARLERVYELF------PRLKERRKQ--LAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIF 172 (222)
T ss_pred hhcCchhHHHHHHHHHHHH------HhhhhhhhC--chhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHH
Confidence 211 11 122222222 122333333 56799999999999999999999876
Q ss_pred ------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 ------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
...++|| .|. + ..||+|++|++|+++
T Consensus 173 ~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 211 (222)
T cd03224 173 EAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVV 211 (222)
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEE
Confidence 1135663 332 2 349999999999974
No 111
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=2.6e-32 Score=274.22 Aligned_cols=176 Identities=30% Similarity=0.386 Sum_probs=137.7
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|+++ .++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+..
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~-------- 72 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNR-------- 72 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChh--------
Confidence 6899999999533 3699999999999999999999999999999999999999999999999998765100
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~- 594 (677)
....+|+.++|++|++.++ +.|++||+.+..
T Consensus 73 -----------------------------------------------~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 105 (222)
T PRK10908 73 -----------------------------------------------EVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLI 105 (222)
T ss_pred -----------------------------------------------HHHHHHhheEEEecCccccccccHHHHHHhHHH
Confidence 2334788999999999874 679999997531
Q ss_pred --CCChH----HHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 595 --RCHDT----ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 595 --~~sde----eI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
..+++ ++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l 176 (222)
T PRK10908 106 IAGASGDDIRRRVSAALDKVGLLDKAKN---------FPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGI 176 (222)
T ss_pred hcCCCHHHHHHHHHHHHHHcCChhhhhC---------CchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHH
Confidence 22222 34566677766554332 35789999999999999999999876
Q ss_pred -------cccccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 -------KKSGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------~~~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
..++.|+ .| .+. -||||++|++|+++
T Consensus 177 ~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 177 LRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 1134552 22 233 38999999999985
No 112
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.9e-33 Score=274.87 Aligned_cols=170 Identities=28% Similarity=0.427 Sum_probs=136.7
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+++||+++|++. ++++|+||++++| ++||+||||||||||+++|+|+++|++|+|.++|.++.+.
T Consensus 1 i~~~~~~~~~~~~--~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----------- 66 (211)
T cd03264 1 LQLENLTKRYGKK--RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQ----------- 66 (211)
T ss_pred CEEEEEEEEECCE--EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccc-----------
Confidence 4789999999653 6999999999999 9999999999999999999999999999999999887655
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-chhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TIrENI~~~~- 594 (677)
+ ..+|++++|++|++.+|.+ |++||+.+..
T Consensus 67 -----------------------------------------------~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 98 (211)
T cd03264 67 -----------------------------------------------P-QKLRRRIGYLPQEFGVYPNFTVREFLDYIAW 98 (211)
T ss_pred -----------------------------------------------h-HHHHhheEEecCCCcccccCCHHHHHHHHHH
Confidence 4 5678889999999998875 9999996421
Q ss_pred --CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 595 --RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 595 --~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
..+ ++++.++++..++.++.+ + ...+||||||||++||||++++|+++
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~--~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l 169 (211)
T cd03264 99 LKGIPSKEVKARVDEVLELVNLGDRAK-------K--KIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRF 169 (211)
T ss_pred HhCCCHHHHHHHHHHHHHHCCCHHHHh-------C--chhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 111 244667788887765432 2 34689999999999999999999976
Q ss_pred ------cccccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 ------KKSGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------~~~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+. .|||+++|++|+++
T Consensus 170 ~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~ 208 (211)
T cd03264 170 RNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLV 208 (211)
T ss_pred HHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 1124553 22 233 48999999999974
No 113
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-32 Score=280.76 Aligned_cols=179 Identities=25% Similarity=0.326 Sum_probs=141.4
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCccEEEECCEecccccHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE-----LSSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~-----p~~G~I~IdG~dI~~l~~~~~ 510 (677)
.++++||+++|++. ++|+|+||++++||++||+||||||||||+++|+|+++ |++|+|.+||+++.+.+
T Consensus 6 ~l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~---- 79 (253)
T PRK14242 6 KMEARGLSFFYGDF--QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH---- 79 (253)
T ss_pred EEEEeeeEEEECCe--eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccc----
Confidence 59999999999753 59999999999999999999999999999999999975 68999999999875420
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcc
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNL 590 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI 590 (677)
.+...+|++++|++|++.+|+.|++||+
T Consensus 80 ----------------------------------------------------~~~~~~~~~i~~v~q~~~~~~~tv~enl 107 (253)
T PRK14242 80 ----------------------------------------------------VDVVELRRRVGMVFQKPNPFPKSIFENV 107 (253)
T ss_pred ----------------------------------------------------cCHHHHhhcEEEEecCCCCCcCcHHHHH
Confidence 0445678899999999999999999999
Q ss_pred ccCC---CC-----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 591 DPFG---RC-----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 591 ~~~~---~~-----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
.++. .. .++++.++++.+++.+++... ++. ...+||||||||++||||++++|+++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~--~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~ 182 (253)
T PRK14242 108 AYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDR---LHE--SALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDP 182 (253)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHH---hhC--CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 6421 11 134567778888886654322 122 46799999999999999999999976
Q ss_pred ------------cccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 ------------KKSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+ +.||||++|++|+++
T Consensus 183 ~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~ 227 (253)
T PRK14242 183 IATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLI 227 (253)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEE
Confidence 1234563 22 23 349999999999974
No 114
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=1.4e-32 Score=287.61 Aligned_cols=179 Identities=24% Similarity=0.358 Sum_probs=137.3
Q ss_pred cEEEEeeeEEeCCCC---CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhh
Q psy845 436 TIKFKNVSLRYRDNW---PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS 512 (677)
Q Consensus 436 ~I~fknVsFsY~~~~---~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~ 512 (677)
.++++||+++|+++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++...+.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~----- 76 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTK----- 76 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccc-----
Confidence 378999999997432 369999999999999999999999999999999999999999999999999865300
Q ss_pred hcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhcc
Q psy845 513 RLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYNL 590 (677)
Q Consensus 513 ~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrENI 590 (677)
..+...+|++++||||+| .+|..|++||+
T Consensus 77 -------------------------------------------------~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i 107 (286)
T PRK13646 77 -------------------------------------------------DKYIRPVRKRIGMVFQFPESQLFEDTVEREI 107 (286)
T ss_pred -------------------------------------------------cchHHHHHhheEEEecChHhccchhhHHHHH
Confidence 004467889999999987 68888999999
Q ss_pred ccCC---CCChHH----HHHHHHHccch-hhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 591 DPFG---RCHDTE----LWDALEKSHLK-SKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 591 ~~~~---~~sdee----I~~Al~~a~l~-efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
.++. ..+.++ +.++++..|+. +.. ++ .+.+||||||||++|||||+.+|+++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-------~~--~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~ 178 (286)
T PRK13646 108 IFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVM-------SQ--SPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDP 178 (286)
T ss_pred HhhHHHcCCCHHHHHHHHHHHHHHcCCChhhh-------hC--CcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence 7532 123322 33344444442 111 11 57899999999999999999999976
Q ss_pred -------------cc-cccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 -------------KK-SGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------------~~-~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
.. .++|| .| .+ +.||||++|++|+++
T Consensus 179 ~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~ 225 (286)
T PRK13646 179 QSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIV 225 (286)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 11 36673 22 23 358999999999974
No 115
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=9.9e-33 Score=296.33 Aligned_cols=177 Identities=32% Similarity=0.423 Sum_probs=139.7
Q ss_pred EEEEeeeEEeCC--CCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 437 IKFKNVSLRYRD--NWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 437 I~fknVsFsY~~--~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
|+++||+++|++ +..++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+..
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~------ 75 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEK------ 75 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHH------
Confidence 689999999972 234699999999999999999999999999999999999999999999999998776110
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~ 593 (677)
+...+|++++||+|++.+|. .|++||+.+.
T Consensus 76 -------------------------------------------------~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~ 106 (343)
T PRK11153 76 -------------------------------------------------ELRKARRQIGMIFQHFNLLSSRTVFDNVALP 106 (343)
T ss_pred -------------------------------------------------HHHHHhcCEEEEeCCCccCCCCcHHHHHHHH
Confidence 33456889999999999985 7999999643
Q ss_pred C---CCCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 594 G---RCHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 594 ~---~~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
. ..++ +++.++++..++.++..+ ...+||||||||++||||++++|+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~---------~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~ 177 (343)
T PRK11153 107 LELAGTPKAEIKARVTELLELVGLSDKADR---------YPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTR 177 (343)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchhhhC---------ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 1 1222 345566777766554332 35689999999999999999999976
Q ss_pred ---------cc-cccce---ecc---cc-cccEEEEEeCCeeC
Q psy845 652 ---------KK-SGVNI---TRP---VT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~-~~~TI---LsT---I~-~aDrIlVLd~GrIV 677 (677)
.. .++|| .|. +. .||||++|++|+++
T Consensus 178 ~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~ 220 (343)
T PRK11153 178 SILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLV 220 (343)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 11 25663 232 33 39999999999974
No 116
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.98 E-value=1.3e-32 Score=273.78 Aligned_cols=173 Identities=30% Similarity=0.413 Sum_probs=135.2
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++||+++|+++ ++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||+++..-+
T Consensus 1 l~~~~l~~~~~~~--~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~---------- 68 (213)
T cd03262 1 IEIKNLHKSFGDF--HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDK---------- 68 (213)
T ss_pred CEEEEEEEEECCe--EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccc----------
Confidence 4689999999753 6999999999999999999999999999999999999999999999999874310
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~- 594 (677)
.+...+|++++|++|++.+|. .|++||+.+..
T Consensus 69 ----------------------------------------------~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~ 102 (213)
T cd03262 69 ----------------------------------------------KNINELRQKVGMVFQQFNLFPHLTVLENITLAPI 102 (213)
T ss_pred ----------------------------------------------hhHHHHHhcceEEecccccCCCCcHHHHHHhHHH
Confidence 044567889999999999886 69999996431
Q ss_pred ---CCCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 ---RCHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ---~~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
+.+. +++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~ 173 (213)
T cd03262 103 KVKGMSKAEAEERALELLEKVGLADKADA---------YPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGE 173 (213)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCHhHhhh---------CccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHH
Confidence 1222 234555555555443332 35789999999999999999999976
Q ss_pred --------cccccce---ec---ccc-cccEEEEEeCCee
Q psy845 652 --------KKSGVNI---TR---PVT-SCDKVLVMDNGQA 676 (677)
Q Consensus 652 --------~~~~~TI---Ls---TI~-~aDrIlVLd~GrI 676 (677)
..+++|+ .| .+. .||+|++|++|++
T Consensus 174 l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 174 VLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 1235663 22 343 4999999999985
No 117
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.98 E-value=8e-33 Score=269.89 Aligned_cols=168 Identities=24% Similarity=0.339 Sum_probs=138.8
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
+.+++|.|+|... =-..++++++||++||+||||||||||+|+++||..|++|+|.|||+|....++
T Consensus 2 l~L~~V~~~y~~~----~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P--------- 68 (231)
T COG3840 2 LALDDVRFSYGHL----PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPP--------- 68 (231)
T ss_pred ccccceEEeeCcc----eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCc---------
Confidence 5678999999753 235789999999999999999999999999999999999999999999877621
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~- 594 (677)
.++-+++++||..|| +.|+++|+.++-
T Consensus 69 ---------------------------------------------------~~RPVSmlFQEnNLFaHLtV~qNigLGl~ 97 (231)
T COG3840 69 ---------------------------------------------------AERPVSMLFQENNLFAHLTVAQNIGLGLS 97 (231)
T ss_pred ---------------------------------------------------ccCChhhhhhccccchhhhhhhhhcccCC
Confidence 245678888888888 679999997652
Q ss_pred ---CC---ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 595 ---RC---HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 595 ---~~---sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
+. ..+.+..|+.++|+.++.++|| .+||||||||+|+||+++|+.||+
T Consensus 98 P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP---------~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eM 168 (231)
T COG3840 98 PGLKLNAEQREKVEAAAAQVGLAGFLKRLP---------GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEM 168 (231)
T ss_pred cccccCHHHHHHHHHHHHHhChhhHhhhCc---------cccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHH
Confidence 22 3455888999999999999987 479999999999999999999987
Q ss_pred --------cccccce---ecccc----cccEEEEEeCCeeC
Q psy845 652 --------KKSGVNI---TRPVT----SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~~~~TI---LsTI~----~aDrIlVLd~GrIV 677 (677)
.-++.|+ .|+.. -+||++++++|||.
T Consensus 169 l~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~ 209 (231)
T COG3840 169 LALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIA 209 (231)
T ss_pred HHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEE
Confidence 1234562 55543 48999999999984
No 118
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=1.7e-32 Score=296.03 Aligned_cols=172 Identities=24% Similarity=0.339 Sum_probs=140.4
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.++++|++++|+++ ..+|+|+||++++||.+||+||||||||||+++|+|+.+|++|+|.+||.++.+.
T Consensus 3 ~l~i~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~---------- 71 (356)
T PRK11650 3 GLKLQAVRKSYDGK-TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNEL---------- 71 (356)
T ss_pred EEEEEeEEEEeCCC-CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCC----------
Confidence 38899999999533 3699999999999999999999999999999999999999999999999998776
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~ 594 (677)
+.. +++++||+|++.+| +.|++||+.++.
T Consensus 72 ------------------------------------------------~~~--~r~ig~v~Q~~~lfp~~tv~eNi~~~~ 101 (356)
T PRK11650 72 ------------------------------------------------EPA--DRDIAMVFQNYALYPHMSVRENMAYGL 101 (356)
T ss_pred ------------------------------------------------CHH--HCCEEEEeCCccccCCCCHHHHHHhHH
Confidence 332 36899999999999 569999997542
Q ss_pred C---CC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 R---CH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ~---~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
+ .+ ++++.++++..++.++..+.| .+||||||||++|||||+++|+++
T Consensus 102 ~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~ 172 (356)
T PRK11650 102 KIRGMPKAEIEERVAEAARILELEPLLDRKP---------RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQ 172 (356)
T ss_pred hhcCCCHHHHHHHHHHHHHHcCChhHhhCCh---------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 1 22 244677888888887765543 589999999999999999999976
Q ss_pred --------cc-cccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 --------KK-SGVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~-~~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
.. .+.|+ .|.. +-||||++|++|+++
T Consensus 173 l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~ 214 (356)
T PRK11650 173 MRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAE 214 (356)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE
Confidence 11 25562 3322 349999999999984
No 119
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=1.4e-32 Score=277.78 Aligned_cols=177 Identities=34% Similarity=0.454 Sum_probs=138.8
Q ss_pred EEEEeeeEEeCCC--CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 437 IKFKNVSLRYRDN--WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 437 I~fknVsFsY~~~--~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
|+++|++++|++. ..++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||+++...+..
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~------ 75 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGK------ 75 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHH------
Confidence 6899999999753 12699999999999999999999999999999999999999999999999988665100
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~ 593 (677)
+....|+.++|+||++.+|. .|++||+.+.
T Consensus 76 -------------------------------------------------~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~ 106 (233)
T cd03258 76 -------------------------------------------------ELRKARRRIGMIFQHFNLLSSRTVFENVALP 106 (233)
T ss_pred -------------------------------------------------HHHHHHhheEEEccCcccCCCCcHHHHHHHH
Confidence 22346788999999999996 6999999642
Q ss_pred C---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 594 G---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 594 ~---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
. ..+ ++++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~ 177 (233)
T cd03258 107 LEIAGVPKAEIEERVLELLELVGLEDKADA---------YPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQ 177 (233)
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCChhhhhc---------ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHH
Confidence 1 111 3345667777776554433 34689999999999999999999876
Q ss_pred ---------ccc-ccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 ---------KKS-GVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~~-~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
..+ ++|| .| .+. .||++++|++|+++
T Consensus 178 ~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~ 220 (233)
T cd03258 178 SILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVV 220 (233)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 112 5673 22 333 48999999999974
No 120
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=1.7e-32 Score=295.52 Aligned_cols=172 Identities=26% Similarity=0.347 Sum_probs=140.0
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
..|+++||+++|++ ..+|+|+||++++||.+||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 5 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~--------- 73 (351)
T PRK11432 5 NFVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHR--------- 73 (351)
T ss_pred cEEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCC---------
Confidence 36999999999974 3599999999999999999999999999999999999999999999999998765
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~ 593 (677)
+. .|++++||+|++.+|. .|++||+.++
T Consensus 74 -------------------------------------------------~~--~~r~ig~vfQ~~~lfp~~tv~eNi~~~ 102 (351)
T PRK11432 74 -------------------------------------------------SI--QQRDICMVFQSYALFPHMSLGENVGYG 102 (351)
T ss_pred -------------------------------------------------CH--HHCCEEEEeCCcccCCCCCHHHHHHHH
Confidence 32 2578999999999995 6999999753
Q ss_pred C---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc--------------
Q psy845 594 G---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK-------------- 652 (677)
Q Consensus 594 ~---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~-------------- 652 (677)
- ..+ ++++.++++..++.++..+ ...+||||||||+||||||+++|+++.
T Consensus 103 l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r---------~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~ 173 (351)
T PRK11432 103 LKMLGVPKEERKQRVKEALELVDLAGFEDR---------YVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRR 173 (351)
T ss_pred HhHcCCCHHHHHHHHHHHHHHcCCchhhcC---------ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHH
Confidence 2 122 3456778888888765443 346899999999999999999999760
Q ss_pred ----------c-cccce---eccc----ccccEEEEEeCCeeC
Q psy845 653 ----------K-SGVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 653 ----------~-~~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
. .++|+ .|.. .-||||+||++|+++
T Consensus 174 ~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~ 216 (351)
T PRK11432 174 SMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIM 216 (351)
T ss_pred HHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 1 25562 3322 348999999999984
No 121
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=1.9e-32 Score=284.23 Aligned_cols=175 Identities=29% Similarity=0.422 Sum_probs=141.0
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-++++|++++|+++.+++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~---------- 76 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKE---------- 76 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcC----------
Confidence 5899999999974445699999999999999999999999999999999999999999999999998665
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhccccC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYNLDPF 593 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrENI~~~ 593 (677)
+...+|++++|++|++ .+++.|++||+.+.
T Consensus 77 ------------------------------------------------~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~ 108 (271)
T PRK13632 77 ------------------------------------------------NLKEIRKKIGIIFQNPDNQFIGATVEDDIAFG 108 (271)
T ss_pred ------------------------------------------------CHHHHhcceEEEEeCHHHhcCcccHHHHHHhH
Confidence 5567788899999998 45578999999753
Q ss_pred C---CCChH----HHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 594 G---RCHDT----ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 594 ~---~~sde----eI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
. ..+.+ ++.++++..++.++..+ ...+||||||||++||||++++|+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~ 179 (271)
T PRK13632 109 LENKKVPPKKMKDIIDDLAKKVGMEDYLDK---------EPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKR 179 (271)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCHHHhhC---------CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 1 12222 35566777777665443 34799999999999999999999976
Q ss_pred ---------ccc-ccce------ecccccccEEEEEeCCeeC
Q psy845 652 ---------KKS-GVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~~-~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
..+ ++|| ...+..||+|++|++|+++
T Consensus 180 ~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~ 221 (271)
T PRK13632 180 EIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLI 221 (271)
T ss_pred HHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEE
Confidence 112 3563 2234569999999999973
No 122
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=2.2e-32 Score=280.32 Aligned_cols=179 Identities=28% Similarity=0.364 Sum_probs=141.7
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CccEEEECCEecccccHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-----~~G~I~IdG~dI~~l~~~~~ 510 (677)
-++++|++++|++. ++++|+||++++||++||+||||||||||+++|+|+++| ++|+|.+||+++...+
T Consensus 7 ~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~---- 80 (254)
T PRK14273 7 IIETENLNLFYTDF--KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNN---- 80 (254)
T ss_pred eEEEeeeEEEeCCc--eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccc----
Confidence 58999999999753 599999999999999999999999999999999999997 4899999998874320
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcc
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNL 590 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI 590 (677)
.+...+|++++|++|++.+|+.|++||+
T Consensus 81 ----------------------------------------------------~~~~~~~~~i~~v~q~~~~~~~tv~eni 108 (254)
T PRK14273 81 ----------------------------------------------------FDILELRRKIGMVFQTPNPFLMSIYDNI 108 (254)
T ss_pred ----------------------------------------------------ccHHHHhhceEEEeeccccccCcHHHHH
Confidence 0345678899999999999999999999
Q ss_pred ccCCC----C----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 591 DPFGR----C----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 591 ~~~~~----~----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
.+... . .++++.++++.+++.+.+ ++.+++ ...+||||||||++||||++++|+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~--~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~ 183 (254)
T PRK14273 109 SYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNT--NALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDP 183 (254)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhC--CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCH
Confidence 75321 1 134466777777775433 344555 56899999999999999999999976
Q ss_pred ------------cccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 ------------KKSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+++|+ .| .+ ..||||++|++|+++
T Consensus 184 ~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~ 228 (254)
T PRK14273 184 ISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIE 228 (254)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 1234552 22 22 349999999999974
No 123
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=1.8e-32 Score=287.32 Aligned_cols=178 Identities=25% Similarity=0.356 Sum_probs=139.3
Q ss_pred EEEEeeeEEeCCCC---CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 437 IKFKNVSLRYRDNW---PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 437 I~fknVsFsY~~~~---~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
|+++||+|+|+++. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+.
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~------ 75 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSK------ 75 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccc------
Confidence 78999999997432 259999999999999999999999999999999999999999999999999853200
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhccc
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYNLD 591 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrENI~ 591 (677)
..+...+|++++||+|+| .+|+.|+.||+.
T Consensus 76 ------------------------------------------------~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~ 107 (288)
T PRK13643 76 ------------------------------------------------QKEIKPVRKKVGVVFQFPESQLFEETVLKDVA 107 (288)
T ss_pred ------------------------------------------------cccHHHHHhhEEEEecCcchhcccchHHHHHH
Confidence 004567889999999988 789999999997
Q ss_pred cCC---CCChH----HHHHHHHHccch-hhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------
Q psy845 592 PFG---RCHDT----ELWDALEKSHLK-SKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------ 651 (677)
Q Consensus 592 ~~~---~~sde----eI~~Al~~a~l~-efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------ 651 (677)
++. ..+.+ ++.++++..++. ++.. . ...+||||||||++||||++.+|+++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-------~--~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~ 178 (288)
T PRK13643 108 FGPQNFGIPKEKAEKIAAEKLEMVGLADEFWE-------K--SPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPK 178 (288)
T ss_pred hHHHHcCCCHHHHHHHHHHHHHHcCCChhhcc-------C--CcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHH
Confidence 532 12222 345566666663 2321 1 45799999999999999999999976
Q ss_pred ------------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 ------------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+++|| .|. + +.||||++|++|+++
T Consensus 179 ~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~ 223 (288)
T PRK13643 179 ARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHII 223 (288)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 1236673 332 2 359999999999984
No 124
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.98 E-value=3.7e-32 Score=280.00 Aligned_cols=181 Identities=26% Similarity=0.367 Sum_probs=142.8
Q ss_pred CccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCccEEEECCEecccccHH
Q psy845 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE-----LSSGQIKIDDFDIASVELE 508 (677)
Q Consensus 434 ~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~-----p~~G~I~IdG~dI~~l~~~ 508 (677)
.+.++++|++++|++. ++|+|+||++++||++||+||||||||||+++|+|+++ |++|+|.+||+++.+.+
T Consensus 11 ~~~l~~~~l~~~~~~~--~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~-- 86 (260)
T PRK10744 11 PSKIQVRNLNFYYGKF--HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK-- 86 (260)
T ss_pred CceEEEEEEEEEeCCe--EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc--
Confidence 4679999999999753 69999999999999999999999999999999999986 58999999999875320
Q ss_pred HhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhh
Q psy845 509 TLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRY 588 (677)
Q Consensus 509 ~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrE 588 (677)
.+...+|++++|++|++.+|+.|++|
T Consensus 87 ------------------------------------------------------~~~~~~~~~i~~~~q~~~~~~~tv~~ 112 (260)
T PRK10744 87 ------------------------------------------------------QDIALLRAKVGMVFQKPTPFPMSIYD 112 (260)
T ss_pred ------------------------------------------------------cchHHHhcceEEEecCCccCcCcHHH
Confidence 04567888999999999999999999
Q ss_pred ccccCC----CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------
Q psy845 589 NLDPFG----RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------- 651 (677)
Q Consensus 589 NI~~~~----~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------- 651 (677)
|+.+.. ..+ ++++.++++..++.+.+... .+. ...+||||||||++||||++++|+++
T Consensus 113 nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~--~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~L 187 (260)
T PRK10744 113 NIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDK---LHQ--SGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSAL 187 (260)
T ss_pred HHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH---Hhc--CCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccC
Confidence 997431 122 24567788888876544322 122 46799999999999999999999976
Q ss_pred --------------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 --------------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+++|| .|. + +-||||++|++|+++
T Consensus 188 D~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 234 (260)
T PRK10744 188 DPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELI 234 (260)
T ss_pred CHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 1234562 232 2 349999999999974
No 125
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.98 E-value=2.1e-32 Score=271.89 Aligned_cols=170 Identities=24% Similarity=0.404 Sum_probs=138.2
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+++|++++|++ .++++|+||++++||.++|+||||||||||+++|+|+.+|++|+|.+||.++.+.
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----------- 67 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN----------- 67 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch-----------
Confidence 478999999964 3699999999999999999999999999999999999999999999999876432
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~- 594 (677)
...|++++|+||++.+| +.|++||+.+..
T Consensus 68 -------------------------------------------------~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 98 (208)
T cd03268 68 -------------------------------------------------IEALRRIGALIEAPGFYPNLTARENLRLLAR 98 (208)
T ss_pred -------------------------------------------------HHHHhhEEEecCCCccCccCcHHHHHHHHHH
Confidence 24567889999998877 579999996432
Q ss_pred --CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------------
Q psy845 595 --RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------------- 651 (677)
Q Consensus 595 --~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------------- 651 (677)
..+++++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 99 ~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 169 (208)
T cd03268 99 LLGIRKKRIDEVLDVVGLKDSAKK---------KVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELI 169 (208)
T ss_pred hcCCcHHHHHHHHHHcCCHHHHhh---------hHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHH
Confidence 2345678888899888765543 35689999999999999999999976
Q ss_pred ---cccccce---ecc---cc-cccEEEEEeCCeeC
Q psy845 652 ---KKSGVNI---TRP---VT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---~~~~~TI---LsT---I~-~aDrIlVLd~GrIV 677 (677)
...++|+ .|. +. -||++++|++|+++
T Consensus 170 ~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~ 205 (208)
T cd03268 170 LSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLI 205 (208)
T ss_pred HHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEE
Confidence 1135663 232 32 49999999999974
No 126
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=2.6e-32 Score=285.21 Aligned_cols=176 Identities=28% Similarity=0.449 Sum_probs=140.7
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-|+++||+++|+++ +++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++..-+
T Consensus 5 ~l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~--------- 74 (283)
T PRK13636 5 ILKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSR--------- 74 (283)
T ss_pred eEEEEeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCc---------
Confidence 48999999999643 46999999999999999999999999999999999999999999999999874210
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhccccC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYNLDPF 593 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrENI~~~ 593 (677)
.+...+|+.++|+||++ .+|+.|++||+.+.
T Consensus 75 -----------------------------------------------~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~ 107 (283)
T PRK13636 75 -----------------------------------------------KGLMKLRESVGMVFQDPDNQLFSASVYQDVSFG 107 (283)
T ss_pred -----------------------------------------------chHHHHHhhEEEEecCcchhhccccHHHHHHhH
Confidence 04557888999999998 57899999999642
Q ss_pred C---CCCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 594 G---RCHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 594 ~---~~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
. ..+. +++.++++..++.++..+ ...+||||||||++|||||+++|+++
T Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~---------~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~ 178 (283)
T PRK13636 108 AVNLKLPEDEVRKRVDNALKRTGIEHLKDK---------PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVS 178 (283)
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCChhhhhC---------CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHH
Confidence 1 1222 345667778777654322 57899999999999999999999976
Q ss_pred ---------ccc-ccce---e---cccc-cccEEEEEeCCeeC
Q psy845 652 ---------KKS-GVNI---T---RPVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~~-~~TI---L---sTI~-~aDrIlVLd~GrIV 677 (677)
..+ ++|| . +.+. .||||++|++|+++
T Consensus 179 ~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~ 221 (283)
T PRK13636 179 EIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVI 221 (283)
T ss_pred HHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 112 6673 2 2343 59999999999974
No 127
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.98 E-value=2.1e-32 Score=295.10 Aligned_cols=171 Identities=25% Similarity=0.315 Sum_probs=139.0
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.++++||+++|++ ..+|+|+||++++||++||+||||||||||+++|+|+.+|++|+|.+||.++.+.
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~---------- 71 (353)
T TIGR03265 4 YLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRL---------- 71 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCC----------
Confidence 4899999999975 3599999999999999999999999999999999999999999999999998765
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~ 594 (677)
++ .+++++||+|++.+| +.|++||+.++-
T Consensus 72 ------------------------------------------------~~--~~r~ig~v~Q~~~lfp~~tv~eNi~~~~ 101 (353)
T TIGR03265 72 ------------------------------------------------PP--QKRDYGIVFQSYALFPNLTVADNIAYGL 101 (353)
T ss_pred ------------------------------------------------CH--HHCCEEEEeCCcccCCCCcHHHHHHHHH
Confidence 33 256799999999999 479999997531
Q ss_pred ---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc---------------
Q psy845 595 ---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK--------------- 652 (677)
Q Consensus 595 ---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~--------------- 652 (677)
..+ ++++.++++..++.++..+ ...+||||||||+||||||+++|+++.
T Consensus 102 ~~~~~~~~~~~~~~~~~l~~l~L~~~~~~---------~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~ 172 (353)
T TIGR03265 102 KNRGMGRAEVAERVAELLDLVGLPGSERK---------YPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREH 172 (353)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCCchhhC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 112 3456777888877765543 457899999999999999999999760
Q ss_pred ---------c-cccc-e--eccc----ccccEEEEEeCCeeC
Q psy845 653 ---------K-SGVN-I--TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 653 ---------~-~~~T-I--LsTI----~~aDrIlVLd~GrIV 677 (677)
. .+.| | .|.. .-||||+||++|+++
T Consensus 173 l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~ 214 (353)
T TIGR03265 173 LRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIE 214 (353)
T ss_pred HHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 1 2556 2 3322 349999999999984
No 128
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.98 E-value=2.9e-32 Score=278.34 Aligned_cols=178 Identities=28% Similarity=0.395 Sum_probs=140.5
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCC-----ccEEEECCEecccccHHHhh
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS-----SGQIKIDDFDIASVELETLR 511 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~-----~G~I~IdG~dI~~l~~~~~~ 511 (677)
++++||+++|++. .+++|+||++++||++||+||||||||||+++|+|+++|+ +|+|.+||.++.+.+
T Consensus 2 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~----- 74 (247)
T TIGR00972 2 IEIENLNLFYGEK--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKK----- 74 (247)
T ss_pred EEEEEEEEEECCe--eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccc-----
Confidence 6899999999753 5999999999999999999999999999999999999998 999999999876530
Q ss_pred hhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccc
Q psy845 512 SRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLD 591 (677)
Q Consensus 512 ~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~ 591 (677)
.+....|++++|+||++.+|+.|++||+.
T Consensus 75 ---------------------------------------------------~~~~~~~~~i~~v~q~~~~~~~tv~e~l~ 103 (247)
T TIGR00972 75 ---------------------------------------------------IDVVELRRRVGMVFQKPNPFPMSIYDNIA 103 (247)
T ss_pred ---------------------------------------------------cchHHHHhheEEEecCcccCCCCHHHHHH
Confidence 03456788999999999999999999996
Q ss_pred cCC---C-CC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------
Q psy845 592 PFG---R-CH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------ 651 (677)
Q Consensus 592 ~~~---~-~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------ 651 (677)
+.. . .+ ++++.++++..++.+++... .+. ...+||||||||++||||++++|+++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~--~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~ 178 (247)
T TIGR00972 104 YGPRLHGIKDKKELDEIVEESLKKAALWDEVKDR---LHD--SALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPI 178 (247)
T ss_pred hHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhH---hhC--CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 421 1 11 24466778888887544211 122 46799999999999999999999976
Q ss_pred -----------cccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 -----------KKSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----------~~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+ +.||||++|++|+++
T Consensus 179 ~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 222 (247)
T TIGR00972 179 ATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELV 222 (247)
T ss_pred HHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 1123562 22 23 349999999999974
No 129
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.98 E-value=3.8e-32 Score=273.74 Aligned_cols=178 Identities=24% Similarity=0.295 Sum_probs=139.4
Q ss_pred cEEEEeeeEEeCCCC--CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 436 TIKFKNVSLRYRDNW--PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 436 ~I~fknVsFsY~~~~--~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
-++++|++++|+++. .++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+..
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~----- 80 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEE----- 80 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHH-----
Confidence 489999999997532 2599999999999999999999999999999999999999999999999988765110
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHH-hhhcccccccccccc-cchhhccc
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL-RSRLSVIPQDPVLFN-GTIRYNLD 591 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~L-R~~I~~V~Qd~~LFs-gTIrENI~ 591 (677)
..... ++.++|++|++.+|. .|++||+.
T Consensus 81 --------------------------------------------------~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~ 110 (228)
T PRK10584 81 --------------------------------------------------ARAKLRAKHVGFVFQSFMLIPTLNALENVE 110 (228)
T ss_pred --------------------------------------------------HHHHHHhheEEEEEcccccCCCcCHHHHHH
Confidence 11223 357999999998887 49999996
Q ss_pred cC---CCC----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------
Q psy845 592 PF---GRC----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------- 651 (677)
Q Consensus 592 ~~---~~~----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------- 651 (677)
+. ... ..+++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~ 181 (228)
T PRK10584 111 LPALLRGESSRQSRNGAKALLEQLGLGKRLDH---------LPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQT 181 (228)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 42 111 13456677788877665443 34589999999999999999999876
Q ss_pred -----------ccc-ccce------ecccccccEEEEEeCCeeC
Q psy845 652 -----------KKS-GVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----------~~~-~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
..+ +.|| .+.+..||+|++|++|+++
T Consensus 182 ~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~ 225 (228)
T PRK10584 182 GDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQ 225 (228)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEE
Confidence 112 5563 2234669999999999974
No 130
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=2.7e-32 Score=277.27 Aligned_cols=170 Identities=29% Similarity=0.347 Sum_probs=134.8
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++||+++|++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 3 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----------- 69 (239)
T cd03296 3 IEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDV----------- 69 (239)
T ss_pred EEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC-----------
Confidence 789999999975 3699999999999999999999999999999999999999999999999987654
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFGR 595 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~~ 595 (677)
+. .|++++|++|++.+|. .|++||+.+...
T Consensus 70 -----------------------------------------------~~--~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 100 (239)
T cd03296 70 -----------------------------------------------PV--QERNVGFVFQHYALFRHMTVFDNVAFGLR 100 (239)
T ss_pred -----------------------------------------------Cc--cccceEEEecCCcccCCCCHHHHHhhhhh
Confidence 21 2567999999998885 699999975321
Q ss_pred ---C----C----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------
Q psy845 596 ---C----H----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------- 651 (677)
Q Consensus 596 ---~----s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------- 651 (677)
. . ++++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~ 171 (239)
T cd03296 101 VKPRSERPPEAEIRAKVHELLKLVQLDWLADR---------YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKV 171 (239)
T ss_pred hccccccCCHHHHHHHHHHHHHHcCChhhhhc---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 1 1 1235566677766544332 35689999999999999999999976
Q ss_pred -----------ccc-ccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 -----------KKS-GVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----------~~~-~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+ ++|| .|. + ..||||++|++|+++
T Consensus 172 ~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (239)
T cd03296 172 RKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIE 216 (239)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 112 5673 332 2 349999999999974
No 131
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=2.4e-32 Score=278.14 Aligned_cols=173 Identities=28% Similarity=0.395 Sum_probs=137.1
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++||+++|+++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~----------- 68 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQ----------- 68 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcC-----------
Confidence 4689999999763 3599999999999999999999999999999999999999999999999988766
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~- 594 (677)
+.+.+|+.++|+||++.+|. .|++||+.+..
T Consensus 69 -----------------------------------------------~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 101 (242)
T cd03295 69 -----------------------------------------------DPVELRRKIGYVIQQIGLFPHMTVEENIALVPK 101 (242)
T ss_pred -----------------------------------------------ChHHhhcceEEEccCccccCCCcHHHHHHHHHH
Confidence 44567888999999998885 79999996431
Q ss_pred --CCC----hHHHHHHHHHccchh--hHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 595 --RCH----DTELWDALEKSHLKS--KVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 595 --~~s----deeI~~Al~~a~l~e--fI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
..+ ++++.++++..++.+ ... . .+.+||||||||++||||++++|+++
T Consensus 102 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-------~--~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 172 (242)
T cd03295 102 LLKWPKEKIRERADELLALVGLDPAEFAD-------R--YPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRD 172 (242)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCCcHHHHh-------c--ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHH
Confidence 111 234556666666643 211 1 46799999999999999999999976
Q ss_pred -------c--cc-ccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 -------K--KS-GVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------~--~~-~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
. .+ ++|| .|.. ..||+|++|++|+++
T Consensus 173 ~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~ 215 (242)
T cd03295 173 QLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIV 215 (242)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 1 12 5663 3322 348999999999974
No 132
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=4.3e-32 Score=282.34 Aligned_cols=174 Identities=27% Similarity=0.417 Sum_probs=139.6
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~---------- 70 (274)
T PRK13644 2 IRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFS---------- 70 (274)
T ss_pred EEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccc----------
Confidence 6899999999643 35999999999999999999999999999999999999999999999999886651
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccc--ccccchhhccccCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV--LFNGTIRYNLDPFG 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~--LFsgTIrENI~~~~ 594 (677)
+...+|+.++|++|+|. +++.|++||+.+..
T Consensus 71 -----------------------------------------------~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~ 103 (274)
T PRK13644 71 -----------------------------------------------KLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGP 103 (274)
T ss_pred -----------------------------------------------cHHHHHhheEEEEEChhhhcccchHHHHHHhhH
Confidence 23567888999999975 56789999997532
Q ss_pred C---CC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 R---CH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ~---~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
. .+ ++++.++++..++.++..+ ...+||||||||++||||++++|+++
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~ 174 (274)
T PRK13644 104 ENLCLPPIEIRKRVDRALAEIGLEKYRHR---------SPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIA 174 (274)
T ss_pred HHcCCCHHHHHHHHHHHHHHCCCHHHhcC---------CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 1 22 2345666777777655433 35799999999999999999999976
Q ss_pred --------cccccce------ecccccccEEEEEeCCeeC
Q psy845 652 --------KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
..+++|| ...+..||||++|++|+++
T Consensus 175 l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~ 214 (274)
T PRK13644 175 VLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIV 214 (274)
T ss_pred HHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEE
Confidence 1235663 2335569999999999974
No 133
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.98 E-value=2.2e-32 Score=272.48 Aligned_cols=170 Identities=25% Similarity=0.370 Sum_probs=134.8
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+++|++++|++. ++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 i~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~----------- 67 (213)
T cd03301 1 VELENVTKRFGNV--TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDL----------- 67 (213)
T ss_pred CEEEeeEEEECCe--eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC-----------
Confidence 4789999999753 699999999999999999999999999999999999999999999999988654
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~- 594 (677)
+. .+++++|++|++.+|. .|++||+.+..
T Consensus 68 -----------------------------------------------~~--~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 98 (213)
T cd03301 68 -----------------------------------------------PP--KDRDIAMVFQNYALYPHMTVYDNIAFGLK 98 (213)
T ss_pred -----------------------------------------------Cc--ccceEEEEecChhhccCCCHHHHHHHHHH
Confidence 21 1357999999998884 69999996431
Q ss_pred --CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 595 --RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 595 --~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
..+ ++++.++++..++.++..+ ...+||||||||++||||++++|+++
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l 169 (213)
T cd03301 99 LRKVPKDEIDERVREVAELLQIEHLLDR---------KPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQM 169 (213)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCHHHHhC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 112 2345566777777655433 34689999999999999999999976
Q ss_pred -------cc-cccce---ecc---cc-cccEEEEEeCCeeC
Q psy845 652 -------KK-SGVNI---TRP---VT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------~~-~~~TI---LsT---I~-~aDrIlVLd~GrIV 677 (677)
.. .++|+ .|. +. .||+|++|++|+++
T Consensus 170 ~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~ 210 (213)
T cd03301 170 RAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210 (213)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 11 25663 232 33 38999999999974
No 134
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.98 E-value=3.4e-32 Score=276.04 Aligned_cols=171 Identities=27% Similarity=0.438 Sum_probs=133.0
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~----------- 68 (236)
T TIGR03864 2 LEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRA----------- 68 (236)
T ss_pred EEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccC-----------
Confidence 678999999974 3699999999999999999999999999999999999999999999999988665
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc-cccchhhccccCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-FNGTIRYNLDPFGR 595 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L-FsgTIrENI~~~~~ 595 (677)
+.. .+++++|++|++.+ ++.|++||+.+...
T Consensus 69 -----------------------------------------------~~~-~~~~i~~~~q~~~~~~~~t~~~~l~~~~~ 100 (236)
T TIGR03864 69 -----------------------------------------------PRA-ALARLGVVFQQPTLDLDLSVRQNLRYHAA 100 (236)
T ss_pred -----------------------------------------------Chh-hhhhEEEeCCCCCCcccCcHHHHHHHHHH
Confidence 322 34579999999887 47899999964321
Q ss_pred ---CC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 596 ---CH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 596 ---~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
.+ ++++.+.++..++.+. +++ ...+||||||||++||||++++|+++
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~gl~~~-------~~~--~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l 171 (236)
T TIGR03864 101 LHGLSRAEARERIAALLARLGLAER-------ADD--KVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAI 171 (236)
T ss_pred hcCCCHHHHHHHHHHHHHHcCChhh-------hcC--ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHH
Confidence 11 1233444555544332 222 46799999999999999999999976
Q ss_pred -------c-ccccce---e---cccccccEEEEEeCCeeC
Q psy845 652 -------K-KSGVNI---T---RPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------~-~~~~TI---L---sTI~~aDrIlVLd~GrIV 677 (677)
. ..++|+ . ..+..||+|++|++|+++
T Consensus 172 ~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~ 211 (236)
T TIGR03864 172 VAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVL 211 (236)
T ss_pred HHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEE
Confidence 1 135663 2 234569999999999974
No 135
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=4.9e-32 Score=283.03 Aligned_cols=175 Identities=24% Similarity=0.366 Sum_probs=142.4
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCc---cEEEECCEecccccHHHhhh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS---GQIKIDDFDIASVELETLRS 512 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~---G~I~IdG~dI~~l~~~~~~~ 512 (677)
-++++|++++|++...++++|+||++++||++||+||||||||||+++|+|+++|++ |+|.+||.++.+.
T Consensus 5 ~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~------- 77 (282)
T PRK13640 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAK------- 77 (282)
T ss_pred eEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcC-------
Confidence 589999999997543469999999999999999999999999999999999999998 8999999988665
Q ss_pred hcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhcc
Q psy845 513 RLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYNL 590 (677)
Q Consensus 513 ~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrENI 590 (677)
+...+|++++|++|++ .+++.|++||+
T Consensus 78 ---------------------------------------------------~~~~~~~~ig~v~q~~~~~~~~~tv~enl 106 (282)
T PRK13640 78 ---------------------------------------------------TVWDIREKVGIVFQNPDNQFVGATVGDDV 106 (282)
T ss_pred ---------------------------------------------------CHHHHHhheEEEEECHHHhhccCCHHHHH
Confidence 4556788899999998 46688999999
Q ss_pred ccCC---CCCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------
Q psy845 591 DPFG---RCHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------ 651 (677)
Q Consensus 591 ~~~~---~~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------ 651 (677)
.+.. ..+. +++.++++..++.++..+. ..+||||||||++||||++++|+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~---------~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~ 177 (282)
T PRK13640 107 AFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSE---------PANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPA 177 (282)
T ss_pred HhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCC---------cccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHH
Confidence 7531 1233 3466788888887655443 4699999999999999999999976
Q ss_pred ------------ccc-ccce------ecccccccEEEEEeCCeeC
Q psy845 652 ------------KKS-GVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~-~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
..+ ++|| ++.+..||||++|++|+++
T Consensus 178 ~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~ 222 (282)
T PRK13640 178 GKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLL 222 (282)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEE
Confidence 112 5663 2334569999999999974
No 136
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.98 E-value=2.7e-32 Score=279.18 Aligned_cols=174 Identities=32% Similarity=0.440 Sum_probs=146.5
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccc-ccHHHhhhhc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS-VELETLRSRL 514 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~-l~~~~~~~~i 514 (677)
-++++|++|+|+++ .++|+|+|+++++||.++|+|+||||||||+++|.|++.|++|+|.+||.+++. .
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~--------- 72 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEK--------- 72 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchh---------
Confidence 47899999999887 679999999999999999999999999999999999999999999999999863 3
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhcccc
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYNLDP 592 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrENI~~ 592 (677)
+..++|+++|+|+|+| .+|..||.|.+++
T Consensus 73 -------------------------------------------------~~~~~~~~vG~VfQnpd~q~~~~tV~~evaf 103 (235)
T COG1122 73 -------------------------------------------------SLLELRQKVGLVFQNPDDQLFGPTVEDEVAF 103 (235)
T ss_pred -------------------------------------------------hHHHhhcceEEEEECcccccccCcHHHHHhh
Confidence 6778899999999998 8999999999986
Q ss_pred CC---CCChHH----HHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------------
Q psy845 593 FG---RCHDTE----LWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------------- 651 (677)
Q Consensus 593 ~~---~~sdee----I~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------------- 651 (677)
+. ..+.+| +.++++.+++.++.++ ...+||||||||+|||.+|..+|+++
T Consensus 104 g~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r---------~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~ 174 (235)
T COG1122 104 GLENLGLPREEIEERVAEALELVGLEELLDR---------PPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGR 174 (235)
T ss_pred chhhcCCCHHHHHHHHHHHHHHcCchhhccC---------CccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHH
Confidence 53 234443 6778889998877443 45799999999999999999999976
Q ss_pred ----------ccc-ccce---ecc---ccc-ccEEEEEeCCeeC
Q psy845 652 ----------KKS-GVNI---TRP---VTS-CDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----------~~~-~~TI---LsT---I~~-aDrIlVLd~GrIV 677 (677)
..+ ++|| .|. +.. |||++||++|+++
T Consensus 175 ~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~ 218 (235)
T COG1122 175 RELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKIL 218 (235)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEe
Confidence 122 4562 332 333 9999999999974
No 137
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.97 E-value=4.3e-32 Score=275.22 Aligned_cols=181 Identities=32% Similarity=0.471 Sum_probs=131.0
Q ss_pred cEEEEeeeEEeCCCC--CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccccc-HHHhhh
Q psy845 436 TIKFKNVSLRYRDNW--PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE-LETLRS 512 (677)
Q Consensus 436 ~I~fknVsFsY~~~~--~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~-~~~~~~ 512 (677)
-++++|+++.|+.+. .++++||||++++||++||||+||||||||.++|+|+.+|++|+|.+||.+..... ..+.++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 478999999998652 25999999999999999999999999999999999999999999999998775542 113455
Q ss_pred hcccccCCccc-cccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccc
Q psy845 513 RLSVIPQDPVL-FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLD 591 (677)
Q Consensus 513 ~i~~v~q~~~l-f~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~ 591 (677)
.+-+|||||+- .+ +....++ .|.|=+.
T Consensus 83 ~VQmVFQDp~~SLn--------------------------------------P~~tv~~--------------~l~Epl~ 110 (252)
T COG1124 83 PVQMVFQDPYSSLN--------------------------------------PRRTVGR--------------ILSEPLR 110 (252)
T ss_pred ceeEEecCCccccC--------------------------------------cchhHHH--------------HHhhhhc
Confidence 56666666541 11 1111111 1222223
Q ss_pred cCC-CCChHHHHHHHHHccchh-hHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc-----------------
Q psy845 592 PFG-RCHDTELWDALEKSHLKS-KVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK----------------- 652 (677)
Q Consensus 592 ~~~-~~sdeeI~~Al~~a~l~e-fI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~----------------- 652 (677)
..+ +-..++++++++.+|+.+ |..+ ...+||||||||+||||||.-+|+++.
T Consensus 111 ~~~~~~~~~~i~~~L~~VgL~~~~l~R---------~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~Il 181 (252)
T COG1124 111 PHGLSKSQQRIAELLDQVGLPPSFLDR---------RPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQIL 181 (252)
T ss_pred cCCccHHHHHHHHHHHHcCCCHHHHhc---------CchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHH
Confidence 222 234566899999999975 3333 457899999999999999999999761
Q ss_pred ------cc--ccc---eecc---cc-cccEEEEEeCCeeC
Q psy845 653 ------KS--GVN---ITRP---VT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 653 ------~~--~~T---ILsT---I~-~aDrIlVLd~GrIV 677 (677)
.+ +-| |.|. +. -||||+||++|++|
T Consensus 182 nlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~iv 221 (252)
T COG1124 182 NLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIV 221 (252)
T ss_pred HHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEE
Confidence 11 224 2332 22 39999999999985
No 138
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.97 E-value=4.6e-32 Score=263.27 Aligned_cols=143 Identities=38% Similarity=0.634 Sum_probs=125.8
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|+++.+++++|+||++++||.+||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~----------- 69 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQW----------- 69 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccC-----------
Confidence 478999999976434699999999999999999999999999999999999999999999999998776
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRC 596 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~ 596 (677)
+.+.+|++++|++|++.+|++|++||+
T Consensus 70 -----------------------------------------------~~~~~~~~i~~~~q~~~~~~~tv~~~l------ 96 (173)
T cd03246 70 -----------------------------------------------DPNELGDHVGYLPQDDELFSGSIAENI------ 96 (173)
T ss_pred -----------------------------------------------CHHHHHhheEEECCCCccccCcHHHHC------
Confidence 556778899999999999999999998
Q ss_pred ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------------c
Q psy845 597 HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------------K 652 (677)
Q Consensus 597 sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------------~ 652 (677)
||||||||++||||++++|+++ .
T Consensus 97 ---------------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~ 143 (173)
T cd03246 97 ---------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK 143 (173)
T ss_pred ---------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHH
Confidence 9999999999999999999976 1
Q ss_pred ccccce------ecccccccEEEEEeCCee
Q psy845 653 KSGVNI------TRPVTSCDKVLVMDNGQA 676 (677)
Q Consensus 653 ~~~~TI------LsTI~~aDrIlVLd~GrI 676 (677)
.+++|| .+.+..||+|++|++|++
T Consensus 144 ~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 144 AAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred hCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 235563 223567999999999985
No 139
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.6e-32 Score=278.22 Aligned_cols=177 Identities=30% Similarity=0.355 Sum_probs=138.7
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CccEEEECCEeccc--ccHH
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIAS--VELE 508 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-----~~G~I~IdG~dI~~--l~~~ 508 (677)
.++++||+++|++. ++|+|+||++++||++||+||||||||||+++|+|+++| ++|+|.+||+++.. .
T Consensus 4 ~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~--- 78 (253)
T PRK14267 4 AIETVNLRVYYGSN--HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV--- 78 (253)
T ss_pred eEEEEeEEEEeCCe--eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc---
Confidence 48899999999753 599999999999999999999999999999999999987 49999999998852 2
Q ss_pred HhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-chh
Q psy845 509 TLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIR 587 (677)
Q Consensus 509 ~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TIr 587 (677)
+...+|++++|++|++.+|.. |++
T Consensus 79 -------------------------------------------------------~~~~~~~~i~~~~q~~~~~~~~tv~ 103 (253)
T PRK14267 79 -------------------------------------------------------DPIEVRREVGMVFQYPNPFPHLTIY 103 (253)
T ss_pred -------------------------------------------------------ChHHHhhceeEEecCCccCCCCcHH
Confidence 344678899999999999965 999
Q ss_pred hccccCC---CC--C----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------
Q psy845 588 YNLDPFG---RC--H----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------- 651 (677)
Q Consensus 588 ENI~~~~---~~--s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------- 651 (677)
||+.+.. .. + ++++.++++..++.+.+.. ..+. ...+||||||||++||||++++|+++
T Consensus 104 enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~--~~~~LS~G~~qrv~laral~~~p~llllDEP~~ 178 (253)
T PRK14267 104 DNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKD---RLND--YPSNLSGGQRQRLVIARALAMKPKILLMDEPTA 178 (253)
T ss_pred HHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhh---hhcc--ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 9996421 11 1 2345667777777554432 1222 56799999999999999999999976
Q ss_pred ----------------cccccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 ----------------KKSGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----------------~~~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
..+++|+ .| .+. .||||++|++|+++
T Consensus 179 ~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 227 (253)
T PRK14267 179 NIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLI 227 (253)
T ss_pred cCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEE
Confidence 1234562 22 233 49999999999974
No 140
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=5.1e-32 Score=284.15 Aligned_cols=179 Identities=26% Similarity=0.382 Sum_probs=138.6
Q ss_pred EEEEeeeEEeCCCC---CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 437 IKFKNVSLRYRDNW---PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 437 I~fknVsFsY~~~~---~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
++++|++++|++.+ .++|+|+||+|++||++||+||||||||||+++|+|+.+|++|+|.+||+++.....
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~------ 76 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKK------ 76 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccc------
Confidence 78999999997532 369999999999999999999999999999999999999999999999999854200
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhccc
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYNLD 591 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrENI~ 591 (677)
..+....|++++||+|+| .+|+.|++||+.
T Consensus 77 ------------------------------------------------~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~ 108 (290)
T PRK13634 77 ------------------------------------------------NKKLKPLRKKVGIVFQFPEHQLFEETVEKDIC 108 (290)
T ss_pred ------------------------------------------------cchHHHHHhhEEEEeeCchhhhhhhhHHHHHH
Confidence 004556788899999987 688899999996
Q ss_pred cCC---CCChH----HHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------
Q psy845 592 PFG---RCHDT----ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------- 651 (677)
Q Consensus 592 ~~~---~~sde----eI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------- 651 (677)
++. ..+.+ .+.++++.+++++.. .++ ...+||||||||++||||++.+|+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~------~~~--~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~ 180 (290)
T PRK13634 109 FGPMNFGVSEEDAKQKAREMIELVGLPEEL------LAR--SPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKG 180 (290)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCCChhh------hhC--CcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 432 12332 345566677664221 122 46799999999999999999999976
Q ss_pred -----------cc-cccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 -----------KK-SGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----------~~-~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
.. .+.|| .|. + +.||||++|++|+++
T Consensus 181 ~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~ 225 (290)
T PRK13634 181 RKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVF 225 (290)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 11 25663 222 2 349999999999974
No 141
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=5.4e-32 Score=280.34 Aligned_cols=175 Identities=27% Similarity=0.432 Sum_probs=139.2
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.++++|++++|+++.+++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~---------- 76 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDD---------- 76 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcC----------
Confidence 4899999999976434699999999999999999999999999999999999999999999999988765
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccc--ccccchhhccccC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV--LFNGTIRYNLDPF 593 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~--LFsgTIrENI~~~ 593 (677)
+...+|++++|++|++. ++..|+++|+.+.
T Consensus 77 ------------------------------------------------~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~ 108 (269)
T PRK13648 77 ------------------------------------------------NFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFG 108 (269)
T ss_pred ------------------------------------------------CHHHHHhheeEEEeChHHhcccccHHHHHHhh
Confidence 55667888889999874 4456789998643
Q ss_pred C---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 594 G---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 594 ~---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
. ... ++++.++++..++.++..+ ...+||||||||++||||++++|+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~ 179 (269)
T PRK13648 109 LENHAVPYDEMHRRVSEALKQVDMLERADY---------EPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQ 179 (269)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCchhhhC---------CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 1 111 2345667777777654322 45799999999999999999999976
Q ss_pred -------c--cc-ccce---e---cccccccEEEEEeCCeeC
Q psy845 652 -------K--KS-GVNI---T---RPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------~--~~-~~TI---L---sTI~~aDrIlVLd~GrIV 677 (677)
. .+ ++|| . ..+..||||++|++|+++
T Consensus 180 ~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~ 221 (269)
T PRK13648 180 NLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVY 221 (269)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEE
Confidence 1 12 5663 2 234469999999999974
No 142
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=6e-32 Score=277.48 Aligned_cols=172 Identities=24% Similarity=0.397 Sum_probs=138.8
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----------- 69 (255)
T PRK11231 3 LRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISML----------- 69 (255)
T ss_pred EEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHC-----------
Confidence 789999999975 3699999999999999999999999999999999999999999999999988766
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-chhhccccCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIRYNLDPFGR 595 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TIrENI~~~~~ 595 (677)
+..++|+.++|+||++.++.+ |++||++++..
T Consensus 70 -----------------------------------------------~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~ 102 (255)
T PRK11231 70 -----------------------------------------------SSRQLARRLALLPQHHLTPEGITVRELVAYGRS 102 (255)
T ss_pred -----------------------------------------------CHHHHhhheEEecccCCCCCCccHHHHHHhccc
Confidence 555677889999999988865 99999975310
Q ss_pred -----------CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------
Q psy845 596 -----------CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------- 651 (677)
Q Consensus 596 -----------~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------- 651 (677)
..++++.++++..++.+...+ ....||||||||++||||++++|+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~ 173 (255)
T PRK11231 103 PWLSLWGRLSAEDNARVNQAMEQTRINHLADR---------RLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINH 173 (255)
T ss_pred hhhhhccCCCHHHHHHHHHHHHHcCCHHHHcC---------CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 112346667777777644332 45799999999999999999999976
Q ss_pred -----------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 -----------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+++|+ .|. + +.||+|++|++|+++
T Consensus 174 ~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 217 (255)
T PRK11231 174 QVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVM 217 (255)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEE
Confidence 1135663 232 3 349999999999974
No 143
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=3.5e-32 Score=272.86 Aligned_cols=171 Identities=26% Similarity=0.391 Sum_probs=135.6
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+++|++++|++. ++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++...
T Consensus 1 i~~~~~~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~----------- 67 (220)
T cd03265 1 IEVENLVKKYGDF--EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE----------- 67 (220)
T ss_pred CEEEEEEEEECCE--EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-----------
Confidence 4789999999753 699999999999999999999999999999999999999999999999876442
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~- 594 (677)
+ ..+|++++|+||++.++. .|++||+.+..
T Consensus 68 -----------------------------------------------~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 99 (220)
T cd03265 68 -----------------------------------------------P-REVRRRIGIVFQDLSVDDELTGWENLYIHAR 99 (220)
T ss_pred -----------------------------------------------h-HHHhhcEEEecCCccccccCcHHHHHHHHHH
Confidence 2 356778899999988886 49999996421
Q ss_pred --CC----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 595 --RC----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 595 --~~----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
.. .++++.++++..++.++..+ ...+||||||||++||||++++|+++
T Consensus 100 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l 170 (220)
T cd03265 100 LYGVPGAERRERIDELLDFVGLLEAADR---------LVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHV 170 (220)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCHHHhhC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHH
Confidence 11 13356677788777655433 34689999999999999999999976
Q ss_pred -------ccc-ccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 -------KKS-GVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------~~~-~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+ ++|+ .|. + ..||||++|++|+++
T Consensus 171 ~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~ 211 (220)
T cd03265 171 WEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRII 211 (220)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE
Confidence 112 5663 332 2 249999999999974
No 144
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.97 E-value=4.5e-32 Score=296.94 Aligned_cols=173 Identities=25% Similarity=0.393 Sum_probs=144.4
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-++++|++++|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.+.
T Consensus 3 ~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~---------- 70 (402)
T PRK09536 3 MIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEAL---------- 70 (402)
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcC----------
Confidence 3889999999975 3699999999999999999999999999999999999999999999999998877
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc-cccchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-FNGTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L-FsgTIrENI~~~~ 594 (677)
+.+++|++++||+|++.+ |+.|++||+.++.
T Consensus 71 ------------------------------------------------~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~ 102 (402)
T PRK09536 71 ------------------------------------------------SARAASRRVASVPQDTSLSFEFDVRQVVEMGR 102 (402)
T ss_pred ------------------------------------------------CHHHHhcceEEEccCCCCCCCCCHHHHHHhcc
Confidence 667788889999999888 5889999996532
Q ss_pred -----------CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------
Q psy845 595 -----------RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------ 651 (677)
Q Consensus 595 -----------~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------ 651 (677)
...++++.++++..++.++..+ ...+||||||||++|||||+++|+++
T Consensus 103 ~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~---------~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~ 173 (402)
T PRK09536 103 TPHRSRFDTWTETDRAAVERAMERTGVAQFADR---------PVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDIN 173 (402)
T ss_pred chhcccccCCCHHHHHHHHHHHHHcCCchhhcC---------ChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHH
Confidence 1123457888999998776543 35799999999999999999999976
Q ss_pred ------------cccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 ------------KKSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+ +.||||++|++|+++
T Consensus 174 ~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv 218 (402)
T PRK09536 174 HQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVR 218 (402)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 1245663 22 23 459999999999974
No 145
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=5.7e-32 Score=275.08 Aligned_cols=178 Identities=25% Similarity=0.313 Sum_probs=135.7
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|++. ++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++....
T Consensus 3 l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~---------- 70 (242)
T PRK11124 3 IQLNGINCFYGAH--QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSK---------- 70 (242)
T ss_pred EEEEeeEEEECCe--eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----------
Confidence 7899999999753 6999999999999999999999999999999999999999999999999873110
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~- 594 (677)
.....+...+|++++|+||++.+|. .|++||+..+.
T Consensus 71 ------------------------------------------~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~ 108 (242)
T PRK11124 71 ------------------------------------------TPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPC 108 (242)
T ss_pred ------------------------------------------ccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHH
Confidence 0000034567889999999999996 49999996311
Q ss_pred ---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 ---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
..+ .+++.++++..++.++..+ ...+||||||||++||||++++|+++
T Consensus 109 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~ 179 (242)
T PRK11124 109 RVLGLSKDQALARAEKLLERLRLKPYADR---------FPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQ 179 (242)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCChhhhhC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHH
Confidence 112 2234555666665544333 34689999999999999999999976
Q ss_pred --------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 --------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+++|+ .|. + ..||||++|++|+++
T Consensus 180 l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~ 220 (242)
T PRK11124 180 IVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIV 220 (242)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 1135663 222 3 249999999999974
No 146
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=5.4e-32 Score=278.23 Aligned_cols=169 Identities=29% Similarity=0.385 Sum_probs=137.7
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.|+++|++|+|.++ +||+||||++++||.+||+||||||||||+|+++|+..|++|+|.++|.+.++.
T Consensus 4 ~i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~---------- 71 (254)
T COG1121 4 MIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKR---------- 71 (254)
T ss_pred EEEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccc----------
Confidence 58999999999865 499999999999999999999999999999999999999999999999887665
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc---cccccchhhcccc
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP---VLFNGTIRYNLDP 592 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~---~LFsgTIrENI~~ 592 (677)
.. +.+||||||.. .-|.-|++|=+..
T Consensus 72 ------------------------------------------------~~---~~~IgYVPQ~~~~d~~fP~tV~d~V~~ 100 (254)
T COG1121 72 ------------------------------------------------RK---RLRIGYVPQKSSVDRSFPITVKDVVLL 100 (254)
T ss_pred ------------------------------------------------cc---CCeEEEcCcccccCCCCCcCHHHHHHc
Confidence 10 35677777744 3467889988754
Q ss_pred CC--------C---CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------
Q psy845 593 FG--------R---CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------- 651 (677)
Q Consensus 593 ~~--------~---~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------- 651 (677)
+. . .+.+++.+|++.+|+.++..+ +-.+|||||+||+.|||||+++|+++
T Consensus 101 g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r---------~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD 171 (254)
T COG1121 101 GRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR---------QIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVD 171 (254)
T ss_pred cCcccccccccccHHHHHHHHHHHHHcCchhhhCC---------cccccCcHHHHHHHHHHHhccCCCEEEecCCcccCC
Confidence 32 1 124789999999999988654 45799999999999999999999976
Q ss_pred --------------cccccce------eccc-ccccEEEEEeCCee
Q psy845 652 --------------KKSGVNI------TRPV-TSCDKVLVMDNGQA 676 (677)
Q Consensus 652 --------------~~~~~TI------LsTI-~~aDrIlVLd~GrI 676 (677)
..+|+|| ++.+ +.||+|+.|++..+
T Consensus 172 ~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~~~ 217 (254)
T COG1121 172 VAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLI 217 (254)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCeeE
Confidence 2348884 3344 45999999987543
No 147
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.97 E-value=4.6e-32 Score=273.49 Aligned_cols=172 Identities=28% Similarity=0.463 Sum_probs=132.9
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++||+++|++. ++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++...
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----------- 67 (232)
T cd03218 1 LRAENLSKRYGKR--KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKL----------- 67 (232)
T ss_pred CeEEEEEEEeCCE--EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccC-----------
Confidence 4789999999753 699999999999999999999999999999999999999999999999988665
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHH-Hhhhccccccccccccc-chhhccccCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET-LRSRLSVIPQDPVLFNG-TIRYNLDPFG 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-LR~~I~~V~Qd~~LFsg-TIrENI~~~~ 594 (677)
+.+. .|+.++|++|++.+|.+ |++||+.+..
T Consensus 68 -----------------------------------------------~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 100 (232)
T cd03218 68 -----------------------------------------------PMHKRARLGIGYLPQEASIFRKLTVEENILAVL 100 (232)
T ss_pred -----------------------------------------------CHhHHHhccEEEecCCccccccCcHHHHHHHHH
Confidence 3323 35679999999998876 9999996421
Q ss_pred ---CCCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 ---RCHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ---~~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
.... +++.++++..++.+.. ++ ...+||||||||++||||++++|+++
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~--~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~ 171 (232)
T cd03218 101 EIRGLSKKEREEKLEELLEEFHITHLR-------KS--KASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQD 171 (232)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCChhhh-------hC--ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHH
Confidence 1111 2234445555443322 11 46799999999999999999999976
Q ss_pred --------cccccce---ecc----cccccEEEEEeCCeeC
Q psy845 652 --------KKSGVNI---TRP----VTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~~~~TI---LsT----I~~aDrIlVLd~GrIV 677 (677)
..+++|| .|. .+.||+|++|++|+++
T Consensus 172 ~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 212 (232)
T cd03218 172 IQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVL 212 (232)
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 1235563 232 2349999999999973
No 148
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=4.9e-32 Score=271.82 Aligned_cols=169 Identities=25% Similarity=0.299 Sum_probs=132.9
Q ss_pred EEEEeeeEEeCCCC--CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 437 IKFKNVSLRYRDNW--PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 437 I~fknVsFsY~~~~--~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
++++|++++|++.. +++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--------- 71 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGP--------- 71 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc---------
Confidence 46899999997521 3699999999999999999999999999999999999999999999999876432
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~ 593 (677)
+++++||||++.+|. .|++||+.+.
T Consensus 72 ------------------------------------------------------~~~i~~v~q~~~~~~~~tv~e~l~~~ 97 (220)
T cd03293 72 ------------------------------------------------------GPDRGYVFQQDALLPWLTVLDNVALG 97 (220)
T ss_pred ------------------------------------------------------cCcEEEEecccccccCCCHHHHHHHH
Confidence 456888888888886 6999998642
Q ss_pred C---CC----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 594 G---RC----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 594 ~---~~----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
. .. .++++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~ 168 (220)
T cd03293 98 LELQGVPKAEARERAEELLELVGLSGFENA---------YPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTRE 168 (220)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCChhhhhC---------CcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHH
Confidence 1 11 13456677777777655443 34689999999999999999999976
Q ss_pred -------c--c-cccce---ecc---c-ccccEEEEEe--CCeeC
Q psy845 652 -------K--K-SGVNI---TRP---V-TSCDKVLVMD--NGQAL 677 (677)
Q Consensus 652 -------~--~-~~~TI---LsT---I-~~aDrIlVLd--~GrIV 677 (677)
. . .++|| .|. + +.||+|++|+ +|+++
T Consensus 169 ~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~ 213 (220)
T cd03293 169 QLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIV 213 (220)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEE
Confidence 1 1 25663 222 2 3499999999 79974
No 149
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=6.4e-32 Score=281.31 Aligned_cols=175 Identities=23% Similarity=0.329 Sum_probs=141.7
Q ss_pred cEEEEeeeEEeCCC-CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 436 TIKFKNVSLRYRDN-WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 436 ~I~fknVsFsY~~~-~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
-++++||+++|++. ..++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~--------- 74 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAE--------- 74 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcC---------
Confidence 48899999999753 24599999999999999999999999999999999999999999999999988665
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhcccc
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYNLDP 592 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrENI~~ 592 (677)
+...+|++++|++|++ .+++.|+.||+.+
T Consensus 75 -------------------------------------------------~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~ 105 (277)
T PRK13642 75 -------------------------------------------------NVWNLRRKIGMVFQNPDNQFVGATVEDDVAF 105 (277)
T ss_pred -------------------------------------------------CHHHHhcceEEEEECHHHhhccCCHHHHHHh
Confidence 4556788999999997 4678899999974
Q ss_pred CC---CCChH----HHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------------
Q psy845 593 FG---RCHDT----ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------------- 651 (677)
Q Consensus 593 ~~---~~sde----eI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------------- 651 (677)
+. ..+++ ++.++++.+++.++..+ ...+||||||||++||||++++|+++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~ 176 (277)
T PRK13642 106 GMENQGIPREEMIKRVDEALLAVNMLDFKTR---------EPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGR 176 (277)
T ss_pred hHHHcCCCHHHHHHHHHHHHHHCCCHhHhhC---------CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 31 22333 34667777787665433 35689999999999999999999976
Q ss_pred ----------ccc-ccce------ecccccccEEEEEeCCeeC
Q psy845 652 ----------KKS-GVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----------~~~-~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
..+ ++|| +..+..||+|++|++|+++
T Consensus 177 ~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~ 219 (277)
T PRK13642 177 QEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEII 219 (277)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEE
Confidence 112 6673 2334569999999999974
No 150
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=8.3e-32 Score=285.01 Aligned_cols=190 Identities=25% Similarity=0.304 Sum_probs=140.5
Q ss_pred EEEEeeeEEeCCCC---CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 437 IKFKNVSLRYRDNW---PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 437 I~fknVsFsY~~~~---~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
|+++||+++|+++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++....
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~------- 75 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKK------- 75 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccc-------
Confidence 78999999997542 25999999999999999999999999999999999999999999999998763210
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhcccccc--ccccchhh------hhHHHHhhhcccccccc--cccc
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIK--IDDFDIAS------VELETLRSRLSVIPQDP--VLFN 583 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~--~~~~~~~~------~~~~~LR~~I~~V~Qd~--~LFs 583 (677)
..|+|- +.+.+++. .+...+|+++|||+|+| .+|.
T Consensus 76 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~ 120 (305)
T PRK13651 76 -----------------------------------KTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFE 120 (305)
T ss_pred -----------------------------------ccccccccccccccccccccccchHHHHHhceEEEeeCccccccc
Confidence 000000 00111111 13557889999999986 7888
Q ss_pred cchhhccccCC---CCCh----HHHHHHHHHccch-hhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----
Q psy845 584 GTIRYNLDPFG---RCHD----TELWDALEKSHLK-SKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---- 651 (677)
Q Consensus 584 gTIrENI~~~~---~~sd----eeI~~Al~~a~l~-efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---- 651 (677)
.|++|||.++. ..+. +++.++++..++. ++..+ ...+||||||||++||||++.+|+++
T Consensus 121 ~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~---------~~~~LSgGqkqrvalA~aL~~~P~lLlLDE 191 (305)
T PRK13651 121 QTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR---------SPFELSGGQKRRVALAGILAMEPDFLVFDE 191 (305)
T ss_pred ccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC---------ChhhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 99999997542 1222 3456677777764 33221 45799999999999999999999976
Q ss_pred --------------------cccccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 --------------------KKSGVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------------------~~~~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
...++|| .|.. +.||||+||++|+++
T Consensus 192 Pt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G~i~ 244 (305)
T PRK13651 192 PTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKII 244 (305)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECCEEE
Confidence 1236673 3322 459999999999974
No 151
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.97 E-value=5.2e-32 Score=286.47 Aligned_cols=173 Identities=34% Similarity=0.484 Sum_probs=136.8
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
..++++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+|+.+.
T Consensus 6 ~~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~--------- 74 (306)
T PRK13537 6 APIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSR--------- 74 (306)
T ss_pred ceEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccc---------
Confidence 36999999999975 3699999999999999999999999999999999999999999999999998654
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~ 593 (677)
+ ...|+++||+||++.+|. .|++||+.+.
T Consensus 75 -------------------------------------------------~-~~~~~~ig~v~q~~~~~~~~tv~e~l~~~ 104 (306)
T PRK13537 75 -------------------------------------------------A-RHARQRVGVVPQFDNLDPDFTVRENLLVF 104 (306)
T ss_pred -------------------------------------------------h-HHHHhcEEEEeccCcCCCCCcHHHHHHHH
Confidence 2 346888999999998885 7999999743
Q ss_pred CC---CChH----HHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 594 GR---CHDT----ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 594 ~~---~sde----eI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
+. .++. ++.++++..++.+ ..++. ..+||||||||++||||++++|+++
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~--~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~ 175 (306)
T PRK13537 105 GRYFGLSAAAARALVPPLLEFAKLEN-------KADAK--VGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARH 175 (306)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCch-------HhcCc--hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHH
Confidence 21 2222 2344555555543 34443 3589999999999999999999976
Q ss_pred ---------cccccce-e--c---ccc-cccEEEEEeCCeeC
Q psy845 652 ---------KKSGVNI-T--R---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~~~~TI-L--s---TI~-~aDrIlVLd~GrIV 677 (677)
..+|+|| + | .+. -||||++|++|+++
T Consensus 176 ~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~ 217 (306)
T PRK13537 176 LMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKI 217 (306)
T ss_pred HHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 1236674 2 2 233 39999999999974
No 152
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=7.3e-32 Score=273.96 Aligned_cols=174 Identities=28% Similarity=0.415 Sum_probs=136.1
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|++ +++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~---------- 69 (240)
T PRK09493 2 IEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPK---------- 69 (240)
T ss_pred EEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC----------
Confidence 679999999975 36999999999999999999999999999999999999999999999999886530
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~- 594 (677)
.+...+|++++|++|++.+|. .|++||+.+..
T Consensus 70 ----------------------------------------------~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 103 (240)
T PRK09493 70 ----------------------------------------------VDERLIRQEAGMVFQQFYLFPHLTALENVMFGPL 103 (240)
T ss_pred ----------------------------------------------hhHHHHhhceEEEecccccCCCCcHHHHHHhHHH
Confidence 034567888999999998885 69999996421
Q ss_pred ---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 ---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
..+ ++++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~ 174 (240)
T PRK09493 104 RVRGASKEEAEKQARELLAKVGLAERAHH---------YPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHE 174 (240)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCChHHHhc---------ChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 111 1234455666555443322 45789999999999999999999976
Q ss_pred --------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 --------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+++|| .|. + ..||||++|++|+++
T Consensus 175 l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 215 (240)
T PRK09493 175 VLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIA 215 (240)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 1135663 232 3 349999999999974
No 153
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=8.1e-32 Score=268.33 Aligned_cols=168 Identities=24% Similarity=0.352 Sum_probs=134.7
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+++|++++|++. . .|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 i~~~~l~~~~~~~--~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~----------- 65 (211)
T cd03298 1 VRLDKIRFSYGEQ--P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAA----------- 65 (211)
T ss_pred CEEEeEEEEeCCE--e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcC-----------
Confidence 4789999999743 2 399999999999999999999999999999999999999999999988665
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-chhhccccCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIRYNLDPFGR 595 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TIrENI~~~~~ 595 (677)
+. .|+.++|++|++.+|.+ |++||+.+...
T Consensus 66 -----------------------------------------------~~--~~~~i~~~~q~~~~~~~~tv~enl~~~~~ 96 (211)
T cd03298 66 -----------------------------------------------PP--ADRPVSMLFQENNLFAHLTVEQNVGLGLS 96 (211)
T ss_pred -----------------------------------------------CH--hHccEEEEecccccCCCCcHHHHHhcccc
Confidence 22 24679999999998864 99999964321
Q ss_pred -------CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 596 -------CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 596 -------~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
..++++.++++..++.+...+. ..+||||||||++||||++++|+++
T Consensus 97 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l 167 (211)
T cd03298 97 PGLKLTAEDRQAIEVALARVGLAGLEKRL---------PGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEM 167 (211)
T ss_pred cccCccHHHHHHHHHHHHHcCCHHHHhCC---------cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 1244677888888887665543 3589999999999999999999976
Q ss_pred -------cc-cccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 -------KK-SGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------~~-~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
.. .++|| .|. + +-||||++|++|+++
T Consensus 168 ~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 208 (211)
T cd03298 168 LDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIA 208 (211)
T ss_pred HHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEe
Confidence 11 25663 232 3 339999999999974
No 154
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=6.8e-32 Score=279.02 Aligned_cols=173 Identities=24% Similarity=0.325 Sum_probs=139.4
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.++++||+++|++. ++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 11 ~l~i~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~---------- 78 (265)
T PRK10575 11 TFALRNVSFRVPGR--TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESW---------- 78 (265)
T ss_pred eEEEeeEEEEECCE--EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhC----------
Confidence 58999999999753 699999999999999999999999999999999999999999999999988766
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~ 594 (677)
+..++|+.++|++|++.++. .|++||+.+..
T Consensus 79 ------------------------------------------------~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 110 (265)
T PRK10575 79 ------------------------------------------------SSKAFARKVAYLPQQLPAAEGMTVRELVAIGR 110 (265)
T ss_pred ------------------------------------------------CHHHHhhheEEeccCCCCCCCccHHHHHHhCc
Confidence 55567788999999876664 49999996421
Q ss_pred -----------CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------
Q psy845 595 -----------RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------ 651 (677)
Q Consensus 595 -----------~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------ 651 (677)
...++++.++++.+++.++..+ ...+||||||||++||||++.+|+++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~ 181 (265)
T PRK10575 111 YPWHGALGRFGAADREKVEEAISLVGLKPLAHR---------LVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIA 181 (265)
T ss_pred ccccccccCCCHHHHHHHHHHHHHcCCHHHhcC---------CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 0123456778888887655433 24589999999999999999999976
Q ss_pred ------------ccc-ccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 ------------KKS-GVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~-~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+ ++|| .| .+ +.||+|++|++|+++
T Consensus 182 ~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~ 227 (265)
T PRK10575 182 HQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMI 227 (265)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 112 5663 22 23 359999999999974
No 155
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=8.8e-32 Score=274.92 Aligned_cols=177 Identities=31% Similarity=0.406 Sum_probs=140.3
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CccEEEECCEecccccHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-----~~G~I~IdG~dI~~l~~~~~ 510 (677)
.++++||+++|++. ++++|+||++++||++||+||||||||||+++|+|+++| ++|+|.+||.++.+.
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~----- 75 (250)
T PRK14247 3 KIEIRDLKVSFGQV--EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKM----- 75 (250)
T ss_pred eEEEEeeEEEECCe--eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcC-----
Confidence 48899999999753 599999999999999999999999999999999999984 699999999998766
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhc
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYN 589 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrEN 589 (677)
+...+|++++|++|++.+| +.|++||
T Consensus 76 -----------------------------------------------------~~~~~~~~i~~v~q~~~~~~~~tv~en 102 (250)
T PRK14247 76 -----------------------------------------------------DVIELRRRVQMVFQIPNPIPNLSIFEN 102 (250)
T ss_pred -----------------------------------------------------CHHHHhccEEEEeccCccCCCCcHHHH
Confidence 5556788899999998755 6799999
Q ss_pred cccCC---C--CC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------
Q psy845 590 LDPFG---R--CH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------- 651 (677)
Q Consensus 590 I~~~~---~--~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------- 651 (677)
+.+.. . .. ++++.++++..++.+.+.. .+++ ...+||||||||++||||++++|+++
T Consensus 103 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~--~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~L 177 (250)
T PRK14247 103 VALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKD---RLDA--PAGKLSGGQQQRLCIARALAFQPEVLLADEPTANL 177 (250)
T ss_pred HHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhh---hhcC--CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccC
Confidence 96421 1 11 2456778888887654432 2333 45799999999999999999999976
Q ss_pred --------------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 --------------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+++|+ .|. + +.||+|++|++|+++
T Consensus 178 D~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 224 (250)
T PRK14247 178 DPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIV 224 (250)
T ss_pred CHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEE
Confidence 1234562 222 3 359999999999973
No 156
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.97 E-value=1.3e-31 Score=268.81 Aligned_cols=177 Identities=29% Similarity=0.405 Sum_probs=132.1
Q ss_pred EEEEeeeEEeCCCC--CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 437 IKFKNVSLRYRDNW--PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 437 I~fknVsFsY~~~~--~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
++++||+++|++.. .++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+..
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~------ 75 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRR------ 75 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchh------
Confidence 68999999997531 2699999999999999999999999999999999999999999999999998765100
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--ccc-ccchhhccc
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLF-NGTIRYNLD 591 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LF-sgTIrENI~ 591 (677)
....+|++++|++|++ .++ ..|++||+.
T Consensus 76 -------------------------------------------------~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~ 106 (228)
T cd03257 76 -------------------------------------------------LRKIRRKEIQMVFQDPMSSLNPRMTIGEQIA 106 (228)
T ss_pred -------------------------------------------------hHHHhhccEEEEecCchhhcCCcCCHHHHHH
Confidence 1346788899999998 344 579999995
Q ss_pred cC----C-CCChHHH----HHHHHHccch-hhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------
Q psy845 592 PF----G-RCHDTEL----WDALEKSHLK-SKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------- 651 (677)
Q Consensus 592 ~~----~-~~sdeeI----~~Al~~a~l~-efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------- 651 (677)
+. + ...+++. .++++..++. +.. +. ...+||||||||++||||++++|+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~--~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD 177 (228)
T cd03257 107 EPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVL-------NR--YPHELSGGQRQRVAIARALALNPKLLIADEPTSALD 177 (228)
T ss_pred HHHHhccCCcHHHHHHHHHHHHHHHCCCChhHh-------hC--CchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCC
Confidence 32 1 1111111 1334444432 111 11 46789999999999999999999976
Q ss_pred --------------ccc-ccce---ecc---cc-cccEEEEEeCCeeC
Q psy845 652 --------------KKS-GVNI---TRP---VT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------------~~~-~~TI---LsT---I~-~aDrIlVLd~GrIV 677 (677)
..+ ++|| .|. +. .||+|++|++|+++
T Consensus 178 ~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 225 (228)
T cd03257 178 VSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIV 225 (228)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEE
Confidence 112 5673 232 33 59999999999974
No 157
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.97 E-value=7.7e-32 Score=275.96 Aligned_cols=185 Identities=24% Similarity=0.393 Sum_probs=139.0
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+++||+++|++ .++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++-
T Consensus 1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~--------- 69 (252)
T TIGR03005 1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPG--------- 69 (252)
T ss_pred CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccc---------
Confidence 578999999975 369999999999999999999999999999999999999999999999998865410
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~- 594 (677)
| +|+. ......+...+|+.++|++|++.+|. .|++||+....
T Consensus 70 --~------------------------------~~~~----~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~ 113 (252)
T TIGR03005 70 --R------------------------------NGPL----VPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPV 113 (252)
T ss_pred --c------------------------------cccc----cccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHH
Confidence 0 0000 00000034567889999999999884 79999996421
Q ss_pred ---CC----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 ---RC----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ---~~----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
.. .++++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 114 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~ 184 (252)
T TIGR03005 114 LVLGMARAEAEKRAMELLDMVGLADKADH---------MPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGE 184 (252)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCChhHhhc---------ChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 11 12345667777776655433 34689999999999999999999976
Q ss_pred --------cc-cccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 --------KK-SGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~-~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
.. .++|+ .| .+ ..|||+++|++|+++
T Consensus 185 l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 185 VLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred HHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 11 25663 22 23 349999999999974
No 158
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.1e-31 Score=278.05 Aligned_cols=181 Identities=25% Similarity=0.355 Sum_probs=142.5
Q ss_pred CccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CccEEEECCEecccccHH
Q psy845 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIASVELE 508 (677)
Q Consensus 434 ~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-----~~G~I~IdG~dI~~l~~~ 508 (677)
.+.|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.+||.++.+.+
T Consensus 17 ~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~-- 92 (267)
T PRK14235 17 EIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR-- 92 (267)
T ss_pred CceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc--
Confidence 457999999999975 3699999999999999999999999999999999999975 8999999999875420
Q ss_pred HhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhh
Q psy845 509 TLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRY 588 (677)
Q Consensus 509 ~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrE 588 (677)
.+...+|+.++|++|++.+|+.|++|
T Consensus 93 ------------------------------------------------------~~~~~~~~~i~~v~q~~~~~~~tv~e 118 (267)
T PRK14235 93 ------------------------------------------------------LDVVELRARVGMVFQKPNPFPKSIYE 118 (267)
T ss_pred ------------------------------------------------------cchHHHhhceEEEecCCCCCCCcHHH
Confidence 03456788999999999999889999
Q ss_pred ccccCC---CC--C----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------
Q psy845 589 NLDPFG---RC--H----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------- 651 (677)
Q Consensus 589 NI~~~~---~~--s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------- 651 (677)
|+.+.. .. + ++++.++++..++.+++... ++. .+.+||||||||++||||++++|+++
T Consensus 119 nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~--~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~ 193 (267)
T PRK14235 119 NVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDR---LHE--PGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSA 193 (267)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHH---hhC--CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcC
Confidence 996421 11 1 23467788888886544321 122 46799999999999999999999976
Q ss_pred ---------------cccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 ---------------KKSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------------~~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+ +.|||+++|++|+++
T Consensus 194 LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~ 241 (267)
T PRK14235 194 LDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLV 241 (267)
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEE
Confidence 1134563 22 23 348999999999974
No 159
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1e-31 Score=274.49 Aligned_cols=180 Identities=28% Similarity=0.391 Sum_probs=139.9
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CccEEEECCEecccccHHH
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIASVELET 509 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-----~~G~I~IdG~dI~~l~~~~ 509 (677)
|.++++||+++|++. ++++|+||++++||++||+||||||||||+++|+|+++| ++|+|.+||.++.+.+
T Consensus 2 ~~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~--- 76 (250)
T PRK14240 2 GKISVKDLDLFYGDF--QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSD--- 76 (250)
T ss_pred CeEEEEEEEEEECCc--eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc---
Confidence 468999999999753 599999999999999999999999999999999999863 6999999999875420
Q ss_pred hhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhc
Q psy845 510 LRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYN 589 (677)
Q Consensus 510 ~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrEN 589 (677)
.+...+|+.++|++|++.+|+.|++||
T Consensus 77 -----------------------------------------------------~~~~~~~~~i~~~~q~~~~~~~t~~~n 103 (250)
T PRK14240 77 -----------------------------------------------------IDVNQLRKRVGMVFQQPNPFPMSIYDN 103 (250)
T ss_pred -----------------------------------------------------cchHHHhccEEEEecCCccCcccHHHH
Confidence 044567889999999999999999999
Q ss_pred cccCC---CC-----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------
Q psy845 590 LDPFG---RC-----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------- 651 (677)
Q Consensus 590 I~~~~---~~-----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------- 651 (677)
+.+.. .. .++++.++++.+++.+.+... .+. .+.+||||||||++||||++++|+++
T Consensus 104 i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~~--~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD 178 (250)
T PRK14240 104 VAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDR---LKK--SALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALD 178 (250)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHH---Hhc--CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 96432 11 134456667777765444321 222 46799999999999999999999976
Q ss_pred -------------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 -------------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+++|| .|. + +.||||++|++|+++
T Consensus 179 ~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~ 224 (250)
T PRK14240 179 PISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIV 224 (250)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEE
Confidence 1234563 232 3 349999999999974
No 160
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.1e-31 Score=279.65 Aligned_cols=173 Identities=23% Similarity=0.350 Sum_probs=139.9
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++||+++|+++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||+++.+.
T Consensus 4 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----------- 71 (277)
T PRK13652 4 IETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKE----------- 71 (277)
T ss_pred EEEEEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcC-----------
Confidence 7899999999644 3599999999999999999999999999999999999999999999999988665
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhccccCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYNLDPFG 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrENI~~~~ 594 (677)
+.+.+++.++||+|++ .+|+.|++||+.+..
T Consensus 72 -----------------------------------------------~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~ 104 (277)
T PRK13652 72 -----------------------------------------------NIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGP 104 (277)
T ss_pred -----------------------------------------------CHHHHHhheEEEecCcccccccccHHHHHHhHH
Confidence 4556788899999997 477889999996421
Q ss_pred ---CCCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 ---RCHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ---~~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
..+. +++.++++..++.++..+ ....||||||||++||||++++|+++
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~ 175 (277)
T PRK13652 105 INLGLDEETVAHRVSSALHMLGLEELRDR---------VPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKE 175 (277)
T ss_pred HHcCCCHHHHHHHHHHHHHHCCChhHhcC---------CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 1222 345677777777665443 34689999999999999999999976
Q ss_pred --------ccc-ccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 --------KKS-GVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~~-~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+ ++|| .| .+ +.||||++|++|+++
T Consensus 176 l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~ 217 (277)
T PRK13652 176 LIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIV 217 (277)
T ss_pred HHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEE
Confidence 112 5673 22 33 459999999999974
No 161
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.97 E-value=1.1e-31 Score=269.53 Aligned_cols=177 Identities=27% Similarity=0.356 Sum_probs=140.4
Q ss_pred EEEEeeeEEeCCC--CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 437 IKFKNVSLRYRDN--WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 437 I~fknVsFsY~~~--~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
++++|++++|+++ .+.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+..
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~------ 75 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEK------ 75 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHh------
Confidence 6899999999753 14699999999999999999999999999999999999999999999999988665100
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~ 593 (677)
..+..|+.++|+||++.+|. .|+.||+.+.
T Consensus 76 -------------------------------------------------~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~ 106 (220)
T TIGR02982 76 -------------------------------------------------ELVQLRRNIGYIFQAHNLLGFLTARQNVQMA 106 (220)
T ss_pred -------------------------------------------------HHHHHHhheEEEcCChhhcCCCCHHHHHHHH
Confidence 23356889999999999987 7999999643
Q ss_pred C----CCCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------------
Q psy845 594 G----RCHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------------- 651 (677)
Q Consensus 594 ~----~~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------------- 651 (677)
. ..+. +++.++++..++.++..+. ..+||||||||++||||++++|+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~ 177 (220)
T TIGR02982 107 LELQPNLSYQEARERARAMLEAVGLGDHLDYY---------PHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSG 177 (220)
T ss_pred HHhccCCCHHHHHHHHHHHHHHcCChhhhhcC---------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHH
Confidence 2 1222 2456677777776655443 4689999999999999999999976
Q ss_pred ---------cc--cccce------ecccccccEEEEEeCCeeC
Q psy845 652 ---------KK--SGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~--~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
.. .++|+ .+....||+|++|++|++.
T Consensus 178 ~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~~ 220 (220)
T TIGR02982 178 RDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKLL 220 (220)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEEC
Confidence 11 25663 2334569999999999974
No 162
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=8.8e-32 Score=275.07 Aligned_cols=179 Identities=25% Similarity=0.372 Sum_probs=139.1
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCccEEEECCEecccccHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE-----LSSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~-----p~~G~I~IdG~dI~~l~~~~~ 510 (677)
-++++|++++|++ .++|+|+||++++||++||+||||||||||+++|+|+++ |++|+|.+||+++.+.+
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~---- 77 (251)
T PRK14251 4 IISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSK---- 77 (251)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEccccc----
Confidence 4899999999975 369999999999999999999999999999999999997 48999999999875320
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcc
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNL 590 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI 590 (677)
.+...+|+.++|++|++.+|+.|++||+
T Consensus 78 ----------------------------------------------------~~~~~~~~~i~~~~q~~~~~~~tv~enl 105 (251)
T PRK14251 78 ----------------------------------------------------MDLVELRKEVGMVFQQPTPFPFSVYDNV 105 (251)
T ss_pred ----------------------------------------------------chHHHhhccEEEEecCCccCCCcHHHHH
Confidence 0445678899999999999999999999
Q ss_pred ccCC---CC-----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 591 DPFG---RC-----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 591 ~~~~---~~-----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
.+.. .. .++++.++++..++++.. ++.++. .+.+||||||||++||||++++|+++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~--~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~ 180 (251)
T PRK14251 106 AYGLKIAGVKDKELIDQRVEESLKQAAIWKET---KDNLDR--NAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDP 180 (251)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch---HHHhcc--ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCH
Confidence 6431 11 123456677777775322 122233 56799999999999999999999976
Q ss_pred ------------cccccce---ecc---cc-cccEEEEEeCCeeC
Q psy845 652 ------------KKSGVNI---TRP---VT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~~~TI---LsT---I~-~aDrIlVLd~GrIV 677 (677)
..++.|| .|. +. .||||++|++|+++
T Consensus 181 ~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~ 225 (251)
T PRK14251 181 ISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLI 225 (251)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEE
Confidence 1234562 232 23 48999999999974
No 163
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.97 E-value=1.2e-31 Score=289.09 Aligned_cols=171 Identities=25% Similarity=0.327 Sum_probs=138.0
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.++++|++++|++. .+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||+++.+.
T Consensus 2 ~L~i~~l~~~~~~~--~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~---------- 69 (353)
T PRK10851 2 SIEIANIKKSFGRT--QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRL---------- 69 (353)
T ss_pred EEEEEEEEEEeCCe--EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC----------
Confidence 37899999999753 599999999999999999999999999999999999999999999999988665
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~ 594 (677)
+. .|++++||+|++.+|. .|++||+.+..
T Consensus 70 ------------------------------------------------~~--~~r~i~~v~Q~~~l~p~~tv~eni~~~~ 99 (353)
T PRK10851 70 ------------------------------------------------HA--RDRKVGFVFQHYALFRHMTVFDNIAFGL 99 (353)
T ss_pred ------------------------------------------------CH--HHCCEEEEecCcccCCCCcHHHHHHhhh
Confidence 22 3567999999999985 69999997532
Q ss_pred C-------CC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------
Q psy845 595 R-------CH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------ 651 (677)
Q Consensus 595 ~-------~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------ 651 (677)
. .+ ++++.++++..++.++..+ ...+||||||||++|||||+++|+++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~---------~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~ 170 (353)
T PRK10851 100 TVLPRRERPNAAAIKAKVTQLLEMVQLAHLADR---------YPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ 170 (353)
T ss_pred hhcccccCCCHHHHHHHHHHHHHHcCCchhhhC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 1 12 2356677888887665443 34689999999999999999999976
Q ss_pred ------------ccc-ccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 ------------KKS-GVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~-~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
..+ ++|+ .|.. +-||||+||++|+++
T Consensus 171 ~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~ 216 (353)
T PRK10851 171 VRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIE 216 (353)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 112 5562 3332 349999999999984
No 164
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.97 E-value=1.1e-31 Score=275.57 Aligned_cols=172 Identities=24% Similarity=0.349 Sum_probs=137.6
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 2 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~----------- 68 (256)
T TIGR03873 2 LRLSRVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGL----------- 68 (256)
T ss_pred ceEEeEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccC-----------
Confidence 789999999975 3699999999999999999999999999999999999999999999999998776
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc-cccchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-FNGTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L-FsgTIrENI~~~~- 594 (677)
+.+.+|+.++|++|++.+ +..|++||+.++.
T Consensus 69 -----------------------------------------------~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 101 (256)
T TIGR03873 69 -----------------------------------------------SRRARARRVALVEQDSDTAVPLTVRDVVALGRI 101 (256)
T ss_pred -----------------------------------------------CHHHHhhheEEecccCccCCCCCHHHHHHhcch
Confidence 555677788999999854 5689999996431
Q ss_pred ---C-------CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------
Q psy845 595 ---R-------CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------- 651 (677)
Q Consensus 595 ---~-------~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------- 651 (677)
+ ..++++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~ 172 (256)
T TIGR03873 102 PHRSLWAGDSPHDAAVVDRALARTELSHLADR---------DMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRA 172 (256)
T ss_pred hhhhhccCCCHHHHHHHHHHHHHcCcHhhhcC---------CcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHH
Confidence 0 012346667777776544322 46799999999999999999999876
Q ss_pred -----------cccccce---e---ccc-ccccEEEEEeCCeeC
Q psy845 652 -----------KKSGVNI---T---RPV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----------~~~~~TI---L---sTI-~~aDrIlVLd~GrIV 677 (677)
..++.|| . +.+ +.||||++|++|+++
T Consensus 173 ~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (256)
T TIGR03873 173 QLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVV 216 (256)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEE
Confidence 1135563 2 234 459999999999974
No 165
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.2e-31 Score=274.07 Aligned_cols=179 Identities=25% Similarity=0.326 Sum_probs=138.8
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCC--CC---CccEEEECCEecccccHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV--EL---SSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y--~p---~~G~I~IdG~dI~~l~~~~~ 510 (677)
-++++||+++|++. ++++|+||++++||++||+||||||||||+++|+|++ .| ++|+|.+||+++.+.+
T Consensus 5 ~l~~~~l~~~~~~~--~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~---- 78 (252)
T PRK14239 5 ILQVSDLSVYYNKK--KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPR---- 78 (252)
T ss_pred eEEEEeeEEEECCe--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcc----
Confidence 48999999999753 6999999999999999999999999999999999995 46 5999999999875430
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcc
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNL 590 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI 590 (677)
.+...+|+.++||||++.+|+.|++||+
T Consensus 79 ----------------------------------------------------~~~~~~~~~i~~v~q~~~~~~~tv~enl 106 (252)
T PRK14239 79 ----------------------------------------------------TDTVDLRKEIGMVFQQPNPFPMSIYENV 106 (252)
T ss_pred ----------------------------------------------------cchHhhhhcEEEEecCCccCcCcHHHHH
Confidence 0345678899999999999999999999
Q ss_pred ccC----CCC----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 591 DPF----GRC----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 591 ~~~----~~~----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
.+. +.. .++++.++++.+++.+.+... .+. ...+||||||||++||||++++|+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~--~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 181 (252)
T PRK14239 107 VYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDR---LHD--SALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDP 181 (252)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHH---Hhc--CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCH
Confidence 642 111 123455677777775544321 122 56799999999999999999999976
Q ss_pred ------------cccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 ------------KKSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+ +.||||++|++|+++
T Consensus 182 ~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T PRK14239 182 ISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLI 226 (252)
T ss_pred HHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 1134563 22 23 349999999999974
No 166
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.7e-31 Score=276.61 Aligned_cols=181 Identities=23% Similarity=0.317 Sum_probs=142.2
Q ss_pred CccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCccEEEECCEecccccHH
Q psy845 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE-----LSSGQIKIDDFDIASVELE 508 (677)
Q Consensus 434 ~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~-----p~~G~I~IdG~dI~~l~~~ 508 (677)
...|+++||+++|++ +++|+|+||++++||.+||+||||||||||+++|+|+++ |++|+|.+||.++.+.+
T Consensus 18 ~~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~-- 93 (267)
T PRK14237 18 EIALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKE-- 93 (267)
T ss_pred CeEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccccc--
Confidence 346999999999964 369999999999999999999999999999999999997 58999999999875320
Q ss_pred HhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhh
Q psy845 509 TLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRY 588 (677)
Q Consensus 509 ~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrE 588 (677)
.+...+|+.++|+||++.+|.+|++|
T Consensus 94 ------------------------------------------------------~~~~~~~~~i~~v~q~~~~~~~tv~e 119 (267)
T PRK14237 94 ------------------------------------------------------INVYEMRKHIGMVFQRPNPFAKSIYE 119 (267)
T ss_pred ------------------------------------------------------CChHHHhcceEEEecCCccccccHHH
Confidence 04556788999999999999999999
Q ss_pred ccccCC---CC-----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------
Q psy845 589 NLDPFG---RC-----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------- 651 (677)
Q Consensus 589 NI~~~~---~~-----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------- 651 (677)
|+.... .. .++++.++++..++.+++... .+. .+.+||||||||++||||++++|+++
T Consensus 120 ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~---~~~--~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~L 194 (267)
T PRK14237 120 NITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDD---LHK--SALTLSGGQQQRLCIARAIAVKPDILLMDEPASAL 194 (267)
T ss_pred HHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhh---hcC--CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 997521 11 123466678888876655322 122 56799999999999999999999976
Q ss_pred --------------cccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 --------------KKSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------------~~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..++.|| .| .+ ..||||++|++|+++
T Consensus 195 D~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 241 (267)
T PRK14237 195 DPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLI 241 (267)
T ss_pred CHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEE
Confidence 1234552 22 23 349999999999974
No 167
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.97 E-value=5.9e-32 Score=269.70 Aligned_cols=165 Identities=30% Similarity=0.425 Sum_probs=129.0
Q ss_pred EEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccc
Q psy845 438 KFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVI 517 (677)
Q Consensus 438 ~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v 517 (677)
+++||+++|++ .++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.
T Consensus 1 ~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-------------- 64 (213)
T cd03235 1 EVEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-------------- 64 (213)
T ss_pred CcccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH--------------
Confidence 36799999975 35999999999999999999999999999999999999999999999997642
Q ss_pred cCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc---cccchhhccccCC
Q psy845 518 PQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL---FNGTIRYNLDPFG 594 (677)
Q Consensus 518 ~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L---FsgTIrENI~~~~ 594 (677)
.+|++++|++|++.+ ++.|++||+....
T Consensus 65 -------------------------------------------------~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~ 95 (213)
T cd03235 65 -------------------------------------------------KERKRIGYVPQRRSIDRDFPISVRDVVLMGL 95 (213)
T ss_pred -------------------------------------------------HHHhheEEeccccccccCCCCcHHHHHHhcc
Confidence 245677888888766 5679999986421
Q ss_pred C-----------CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------
Q psy845 595 R-----------CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------ 651 (677)
Q Consensus 595 ~-----------~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------ 651 (677)
. ..++++.++++..++.++..+ ...+||||||||++||||++++|+++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~ 166 (213)
T cd03235 96 YGHKGLFRRLSKADKAKVDEALERVGLSELADR---------QIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPK 166 (213)
T ss_pred ccccccccCCCHHHHHHHHHHHHHcCCHHHHhC---------CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 1 112456677788777655433 35689999999999999999999976
Q ss_pred ------------cccccce---ec---ccc-cccEEEEEeCCee
Q psy845 652 ------------KKSGVNI---TR---PVT-SCDKVLVMDNGQA 676 (677)
Q Consensus 652 ------------~~~~~TI---Ls---TI~-~aDrIlVLd~GrI 676 (677)
..+++|+ .| .+. -||+|++|++|.+
T Consensus 167 ~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~~~ 210 (213)
T cd03235 167 TQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210 (213)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCcEe
Confidence 1145562 22 233 4899999999854
No 168
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.97 E-value=9.4e-32 Score=290.94 Aligned_cols=172 Identities=27% Similarity=0.388 Sum_probs=140.1
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCc--cEEEECCEecccccHHHhhh
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS--GQIKIDDFDIASVELETLRS 512 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~--G~I~IdG~dI~~l~~~~~~~ 512 (677)
++++++||+++|++. .+|+|+||++++||.+||+||||||||||+++|+|+++|++ |+|.+||.++.+.
T Consensus 4 ~~l~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~------- 74 (362)
T TIGR03258 4 GGIRIDHLRVAYGAN--TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHA------- 74 (362)
T ss_pred eEEEEEEEEEEECCe--EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCC-------
Confidence 579999999999753 59999999999999999999999999999999999999999 9999999988665
Q ss_pred hcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccc
Q psy845 513 RLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLD 591 (677)
Q Consensus 513 ~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~ 591 (677)
+. .+++++||+|++.+|. .|++||+.
T Consensus 75 ---------------------------------------------------~~--~~r~ig~vfQ~~~l~p~~tv~enl~ 101 (362)
T TIGR03258 75 ---------------------------------------------------PP--HKRGLALLFQNYALFPHLKVEDNVA 101 (362)
T ss_pred ---------------------------------------------------CH--HHCCEEEEECCcccCCCCcHHHHHH
Confidence 32 2567899999999985 59999997
Q ss_pred cCC---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------
Q psy845 592 PFG---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------- 651 (677)
Q Consensus 592 ~~~---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------- 651 (677)
++- ..+ ++++.++++..++.++..+. ..+||||||||+||||||+++|+++
T Consensus 102 ~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~---------~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~ 172 (362)
T TIGR03258 102 FGLRAQKMPKADIAERVADALKLVGLGDAAAHL---------PAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANI 172 (362)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCC---------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHH
Confidence 531 222 23466778888887766554 4689999999999999999999976
Q ss_pred -----------ccc--ccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 -----------KKS--GVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----------~~~--~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
..+ +.|+ .|.. +-||||+||++|+++
T Consensus 173 r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~ 218 (362)
T TIGR03258 173 RANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLA 218 (362)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 112 5673 3322 349999999999984
No 169
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.97 E-value=1.2e-31 Score=291.33 Aligned_cols=172 Identities=26% Similarity=0.397 Sum_probs=140.4
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
..++++|++++|++ ..+|+|+||++++||.+||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 13 ~~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~--------- 81 (375)
T PRK09452 13 PLVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHV--------- 81 (375)
T ss_pred ceEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCC---------
Confidence 35999999999975 3599999999999999999999999999999999999999999999999998765
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~ 593 (677)
+.. +++++||+|++.|| +.|++||+.++
T Consensus 82 -------------------------------------------------~~~--~r~ig~vfQ~~~lfp~ltv~eNi~~~ 110 (375)
T PRK09452 82 -------------------------------------------------PAE--NRHVNTVFQSYALFPHMTVFENVAFG 110 (375)
T ss_pred -------------------------------------------------CHH--HCCEEEEecCcccCCCCCHHHHHHHH
Confidence 322 46789999999898 45999999753
Q ss_pred C---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 594 G---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 594 ~---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
- ..+ ++++.++++..++.++..+.| .+||||||||+||||||+++|+++
T Consensus 111 l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p---------~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~ 181 (375)
T PRK09452 111 LRMQKTPAAEITPRVMEALRMVQLEEFAQRKP---------HQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRK 181 (375)
T ss_pred HhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHH
Confidence 2 122 235677888888887766544 589999999999999999999976
Q ss_pred ---------cc-cccc-e--ecc----cccccEEEEEeCCeeC
Q psy845 652 ---------KK-SGVN-I--TRP----VTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~-~~~T-I--LsT----I~~aDrIlVLd~GrIV 677 (677)
.. .+.| | .|. ..-||||+||++|+++
T Consensus 182 ~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~ 224 (375)
T PRK09452 182 QMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIE 224 (375)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 11 2556 2 332 2349999999999984
No 170
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=7.1e-32 Score=268.55 Aligned_cols=168 Identities=23% Similarity=0.431 Sum_probs=130.7
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|++ +++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++..
T Consensus 1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~------------ 66 (210)
T cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI------------ 66 (210)
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH------------
Confidence 478999999974 369999999999999999999999999999999999999999999999976521
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~- 594 (677)
..|++++|++|++.+|. .|++||+.+..
T Consensus 67 --------------------------------------------------~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 96 (210)
T cd03269 67 --------------------------------------------------AARNRIGYLPEERGLYPKMKVIDQLVYLAQ 96 (210)
T ss_pred --------------------------------------------------HHHccEEEeccCCcCCcCCcHHHHHHHHHH
Confidence 34667888888888886 49999986421
Q ss_pred --CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 595 --RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 595 --~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
..+ ++++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 97 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~ 167 (210)
T cd03269 97 LKGLKKEEARRRIDEWLERLELSEYANK---------RVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELL 167 (210)
T ss_pred HcCCChHHHHHHHHHHHHHcCChHHHhC---------cHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence 111 2345556666666544322 45789999999999999999999976
Q ss_pred -------cccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 -------KKSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------~~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+ +-||+|++|++|+++
T Consensus 168 ~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~ 207 (210)
T cd03269 168 KDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAV 207 (210)
T ss_pred HHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEE
Confidence 1135563 22 23 349999999999974
No 171
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1e-31 Score=279.62 Aligned_cols=179 Identities=25% Similarity=0.369 Sum_probs=136.7
Q ss_pred EEEEeeeEEeCCCC---CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 437 IKFKNVSLRYRDNW---PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 437 I~fknVsFsY~~~~---~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
++++||+++|+++. .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||+++...+.
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~------ 76 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSK------ 76 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccc------
Confidence 78999999997532 359999999999999999999999999999999999999999999999998865300
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhccc
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYNLD 591 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrENI~ 591 (677)
..+.+.+|+.++|+||++ .+|+.|++||+.
T Consensus 77 ------------------------------------------------~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~ 108 (280)
T PRK13649 77 ------------------------------------------------NKDIKQIRKKVGLVFQFPESQLFEETVLKDVA 108 (280)
T ss_pred ------------------------------------------------ccCHHHHHhheEEEeeChhhhhccccHHHHHH
Confidence 003456788999999997 688899999996
Q ss_pred cCC---CCChHH----HHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------
Q psy845 592 PFG---RCHDTE----LWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------- 651 (677)
Q Consensus 592 ~~~---~~sdee----I~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------- 651 (677)
+.. ..+.++ +.++++..++.+.. .+. ...+||||||||++||||++++|+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~--~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~ 180 (280)
T PRK13649 109 FGPQNFGVSQEEAEALAREKLALVGISESL------FEK--NPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKG 180 (280)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCChhh------hhC--CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 421 122322 33445555553211 111 56799999999999999999999976
Q ss_pred -----------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 -----------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
...++|| .|. + +-||+|++|++|+++
T Consensus 181 ~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 224 (280)
T PRK13649 181 RKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLV 224 (280)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEE
Confidence 1135663 222 3 348999999999974
No 172
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.7e-31 Score=278.50 Aligned_cols=176 Identities=27% Similarity=0.394 Sum_probs=141.4
Q ss_pred cEEEEeeeEEeCCC----CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhh
Q psy845 436 TIKFKNVSLRYRDN----WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR 511 (677)
Q Consensus 436 ~I~fknVsFsY~~~----~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~ 511 (677)
-++++|++++|++. .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~----- 78 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEE----- 78 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccc-----
Confidence 48999999999742 246999999999999999999999999999999999999999999999999876531
Q ss_pred hhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhc
Q psy845 512 SRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYN 589 (677)
Q Consensus 512 ~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrEN 589 (677)
....+|++++|+||++ .+|..|+.||
T Consensus 79 ----------------------------------------------------~~~~~~~~i~~v~q~~~~~~~~~~v~~~ 106 (280)
T PRK13633 79 ----------------------------------------------------NLWDIRNKAGMVFQNPDNQIVATIVEED 106 (280)
T ss_pred ----------------------------------------------------cHHHHhhheEEEecChhhhhccccHHHH
Confidence 2345678899999987 3677789999
Q ss_pred cccCC---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 590 LDPFG---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 590 I~~~~---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
+.++. ..+ ++++.++++..++.++..+. ..+||||||||++||||++++|+++
T Consensus 107 l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~---------~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~ 177 (280)
T PRK13633 107 VAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHA---------PHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDP 177 (280)
T ss_pred HHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCC---------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 96532 112 34567788888887765543 3689999999999999999999976
Q ss_pred -------------cc-cccce------ecccccccEEEEEeCCeeC
Q psy845 652 -------------KK-SGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------------~~-~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
.. .++|| ++.+..|||+++|++|+++
T Consensus 178 ~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~ 223 (280)
T PRK13633 178 SGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVV 223 (280)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEE
Confidence 11 26673 2334569999999999974
No 173
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.97 E-value=1.3e-31 Score=275.20 Aligned_cols=188 Identities=24% Similarity=0.312 Sum_probs=140.8
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
+.++++||+++|++ ..+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.... ...
T Consensus 4 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-----~~~ 76 (257)
T PRK10619 4 NKLNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVR-----DKD 76 (257)
T ss_pred ccEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccc-----ccc
Confidence 56999999999975 36999999999999999999999999999999999999999999999999875420 000
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~ 593 (677)
+.+. +.+ ....+.+|+.++|+||++.+|. .|++||+.++
T Consensus 77 ~~~~----~~~------------------------------------~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~ 116 (257)
T PRK10619 77 GQLK----VAD------------------------------------KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA 116 (257)
T ss_pred cccc----ccc------------------------------------chHHHHHhhceEEEecCcccCCCCcHHHHHHHH
Confidence 0000 000 0024567889999999999996 5999999642
Q ss_pred C----CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------------
Q psy845 594 G----RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------------- 651 (677)
Q Consensus 594 ~----~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------------- 651 (677)
. ... ++++.++++..++.+... +. ...+||||||||++||||++++|+++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~------~~--~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 188 (257)
T PRK10619 117 PIQVLGLSKQEARERAVKYLAKVGIDERAQ------GK--YPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELV 188 (257)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCChhhh------hC--CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 1 111 234566777777655431 11 46799999999999999999999976
Q ss_pred ----------cccccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 ----------KKSGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----------~~~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
...++|| .| .+. .||||++|++|+++
T Consensus 189 ~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 231 (257)
T PRK10619 189 GEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 231 (257)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 1235663 22 344 38999999999974
No 174
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.97 E-value=1.6e-31 Score=276.31 Aligned_cols=169 Identities=27% Similarity=0.351 Sum_probs=137.0
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
..|+++|++++|++. ++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.
T Consensus 11 ~~l~i~~l~~~~~~~--~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~----------- 77 (257)
T PRK11247 11 TPLLLNAVSKRYGER--TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA----------- 77 (257)
T ss_pred CcEEEEEEEEEECCc--ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----------
Confidence 459999999999753 6999999999999999999999999999999999999999999999986542
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~ 593 (677)
.+|++++|++|++.+|. .|++||+.+.
T Consensus 78 ----------------------------------------------------~~~~~i~~v~q~~~l~~~~tv~enl~~~ 105 (257)
T PRK11247 78 ----------------------------------------------------EAREDTRLMFQDARLLPWKKVIDNVGLG 105 (257)
T ss_pred ----------------------------------------------------HhhCceEEEecCccCCCCCcHHHHHHhc
Confidence 34567888999988886 6999999753
Q ss_pred C-CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------------
Q psy845 594 G-RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------------- 651 (677)
Q Consensus 594 ~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------------- 651 (677)
. ...++++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 106 ~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L 176 (257)
T PRK11247 106 LKGQWRDAALQALAAVGLADRANE---------WPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLI 176 (257)
T ss_pred ccchHHHHHHHHHHHcCChhHhcC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 2 2235667788888888655432 35799999999999999999999976
Q ss_pred -c--c-cccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 -K--K-SGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -~--~-~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
. . .++|| .|. + +.||+|++|++|+++
T Consensus 177 ~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~ 213 (257)
T PRK11247 177 ESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIG 213 (257)
T ss_pred HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 1 1 25663 232 3 349999999999974
No 175
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.97 E-value=1.4e-31 Score=260.72 Aligned_cols=146 Identities=35% Similarity=0.569 Sum_probs=124.6
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+++|++++|+++++++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~----------- 69 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL----------- 69 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-----------
Confidence 478999999976534699999999999999999999999999999999999999999999999876432
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRC 596 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~ 596 (677)
...+|+.++|++|++.+|+.|++||+
T Consensus 70 ------------------------------------------------~~~~~~~i~~~~q~~~~~~~tv~~~i------ 95 (178)
T cd03247 70 ------------------------------------------------EKALSSLISVLNQRPYLFDTTLRNNL------ 95 (178)
T ss_pred ------------------------------------------------HHHHHhhEEEEccCCeeecccHHHhh------
Confidence 23567889999999999999999997
Q ss_pred ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------------cc
Q psy845 597 HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-----------------------KK 653 (677)
Q Consensus 597 sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-----------------------~~ 653 (677)
..+||||||||++||||++++|+++ ..
T Consensus 96 ------------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~ 145 (178)
T cd03247 96 ------------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL 145 (178)
T ss_pred ------------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc
Confidence 4589999999999999999999976 11
Q ss_pred cccce------ecccccccEEEEEeCCeeC
Q psy845 654 SGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 654 ~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
+++|| ...+..|||+++|++|+++
T Consensus 146 ~~~tii~~sh~~~~~~~~d~~~~l~~g~i~ 175 (178)
T cd03247 146 KDKTLIWITHHLTGIEHMDKILFLENGKII 175 (178)
T ss_pred CCCEEEEEecCHHHHHhCCEEEEEECCEEE
Confidence 34563 2234569999999999974
No 176
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.97 E-value=2e-31 Score=269.01 Aligned_cols=173 Identities=29% Similarity=0.403 Sum_probs=137.2
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-|+++||+++|++. ++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 7 ~i~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~---------- 74 (225)
T PRK10247 7 LLQLQNVGYLAGDA--KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTL---------- 74 (225)
T ss_pred eEEEeccEEeeCCc--eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcC----------
Confidence 48999999999753 599999999999999999999999999999999999999999999999988776
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccC--
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPF-- 593 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~-- 593 (677)
+...+|+.++|++|++.+|+.|++||+.+.
T Consensus 75 ------------------------------------------------~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~ 106 (225)
T PRK10247 75 ------------------------------------------------KPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQ 106 (225)
T ss_pred ------------------------------------------------CHHHHHhccEEEecccccccccHHHHHHhHHh
Confidence 555678899999999999999999999642
Q ss_pred --CC-CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------------
Q psy845 594 --GR-CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------- 651 (677)
Q Consensus 594 --~~-~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------- 651 (677)
+. ..++++.++++..++.+.. .+. ...+||||||||++||||++++|+++
T Consensus 107 ~~~~~~~~~~~~~~l~~~~l~~~~------~~~--~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 178 (225)
T PRK10247 107 IRNQQPDPAIFLDDLERFALPDTI------LTK--NIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNE 178 (225)
T ss_pred hcCCChHHHHHHHHHHHcCCChHH------hcC--CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 11 1223455666666664211 111 56799999999999999999999976
Q ss_pred -----cc-cccce------ecccccccEEEEEe--CCee
Q psy845 652 -----KK-SGVNI------TRPVTSCDKVLVMD--NGQA 676 (677)
Q Consensus 652 -----~~-~~~TI------LsTI~~aDrIlVLd--~GrI 676 (677)
.. .+.|| ...++.||+|++|+ +|++
T Consensus 179 ~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~ 217 (225)
T PRK10247 179 IIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEM 217 (225)
T ss_pred HHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchH
Confidence 11 25562 22345699999996 4543
No 177
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=2e-31 Score=269.69 Aligned_cols=178 Identities=28% Similarity=0.417 Sum_probs=144.1
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
..|++++|+++|.++ .|++|+||+|++||..||+||||||||||+|++.|+..|++|+|.++|.|+.+++
T Consensus 7 ~~I~vr~v~~~fG~~--~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls-------- 76 (263)
T COG1127 7 PLIEVRGVTKSFGDR--VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLS-------- 76 (263)
T ss_pred ceEEEeeeeeecCCE--EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccC--------
Confidence 469999999999764 6999999999999999999999999999999999999999999999999998872
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~ 593 (677)
+....++|+++|+++|..-|| +.|+.||+.+-
T Consensus 77 -----------------------------------------------~~~~~~ir~r~GvlFQ~gALFssltV~eNVafp 109 (263)
T COG1127 77 -----------------------------------------------EEELYEIRKRMGVLFQQGALFSSLTVFENVAFP 109 (263)
T ss_pred -----------------------------------------------HHHHHHHHhheeEEeeccccccccchhHhhhee
Confidence 126678899999999999999 56999999742
Q ss_pred ----CCCChHHHHH----HHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc-------------
Q psy845 594 ----GRCHDTELWD----ALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK------------- 652 (677)
Q Consensus 594 ----~~~sdeeI~~----Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~------------- 652 (677)
.+.+++++.+ -++.+|+..-+..+ ..++||||+|.|.|||||+.-||+++.
T Consensus 110 lre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~--------~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a 181 (263)
T COG1127 110 LREHTKLPESLIRELVLMKLELVGLRGAAADL--------YPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISA 181 (263)
T ss_pred hHhhccCCHHHHHHHHHHHHHhcCCChhhhhh--------CchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchH
Confidence 2455555544 45667776552221 457999999999999999999999771
Q ss_pred ------------ccccc---eec----ccccccEEEEEeCCeeC
Q psy845 653 ------------KSGVN---ITR----PVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 653 ------------~~~~T---ILs----TI~~aDrIlVLd~GrIV 677 (677)
.-+.| |.| +..-||||+++.||+|+
T Consensus 182 ~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~ 225 (263)
T COG1127 182 GVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVI 225 (263)
T ss_pred HHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEE
Confidence 11334 233 23458999999999984
No 178
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.8e-31 Score=276.12 Aligned_cols=179 Identities=26% Similarity=0.400 Sum_probs=138.9
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCccEEEECCEecccccHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE-----LSSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~-----p~~G~I~IdG~dI~~l~~~~~ 510 (677)
-++++|++++|++ +++|+|+||++++||++||+||||||||||+++|+|+.+ |++|+|.+||.++...+
T Consensus 21 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~---- 94 (268)
T PRK14248 21 ILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSN---- 94 (268)
T ss_pred eEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccc----
Confidence 5899999999975 369999999999999999999999999999999999865 79999999999875420
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcc
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNL 590 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI 590 (677)
.+...+|++++|++|++.+|++|++||+
T Consensus 95 ----------------------------------------------------~~~~~~~~~i~~v~q~~~~~~~tv~enl 122 (268)
T PRK14248 95 ----------------------------------------------------INVVNLRREIGMVFQKPNPFPKSIYNNI 122 (268)
T ss_pred ----------------------------------------------------ccHHHHhccEEEEecCCccCcccHHHHH
Confidence 0345678899999999999999999999
Q ss_pred ccC----CC----CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 591 DPF----GR----CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 591 ~~~----~~----~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
.+. +. ..++.+.++++..++.+.+... .+. ...+||||||||++||||++++|+++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~--~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~ 197 (268)
T PRK14248 123 THALKYAGERRKSVLDEIVEESLTKAALWDEVKDR---LHS--SALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDP 197 (268)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHH---Hhc--CcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCH
Confidence 642 11 1123456677777765333211 122 56799999999999999999999976
Q ss_pred ------------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 ------------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+++|| .|. + +.||||++|++|+++
T Consensus 198 ~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~ 242 (268)
T PRK14248 198 ISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLV 242 (268)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEE
Confidence 1234563 222 2 349999999999974
No 179
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.7e-31 Score=273.29 Aligned_cols=173 Identities=21% Similarity=0.313 Sum_probs=131.7
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-++++|++++|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++...
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~---------- 72 (255)
T PRK11300 5 LLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGL---------- 72 (255)
T ss_pred eEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCC----------
Confidence 4899999999975 3699999999999999999999999999999999999999999999999988765
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHH-Hhhhccccccccccccc-chhhccccC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET-LRSRLSVIPQDPVLFNG-TIRYNLDPF 593 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-LR~~I~~V~Qd~~LFsg-TIrENI~~~ 593 (677)
+... .|..++|++|++.+|.+ |++||+.++
T Consensus 73 ------------------------------------------------~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~ 104 (255)
T PRK11300 73 ------------------------------------------------PGHQIARMGVVRTFQHVRLFREMTVIENLLVA 104 (255)
T ss_pred ------------------------------------------------CHHHHHhcCeEEeccCcccCCCCcHHHHHHHh
Confidence 3223 34568888999988874 999998753
Q ss_pred CC----------------CC------hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 594 GR----------------CH------DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 594 ~~----------------~s------deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
.. .. .+++.++++..++.+.. +. ...+||||||||++||||++++|+++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~--~~~~LS~G~~qrv~la~al~~~p~ll 175 (255)
T PRK11300 105 QHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHA-------NR--QAGNLAYGQQRRLEIARCMVTQPEIL 175 (255)
T ss_pred hhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhh-------hC--ChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 10 00 01223333444333221 11 56799999999999999999999976
Q ss_pred ------------------------ccc-ccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 ------------------------KKS-GVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------------------~~~-~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+ ++|| .| .+ ..||+|++|++|+++
T Consensus 176 llDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~ 233 (255)
T PRK11300 176 MLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPL 233 (255)
T ss_pred EEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 112 5663 22 23 349999999999974
No 180
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.97 E-value=5.1e-31 Score=276.31 Aligned_cols=169 Identities=26% Similarity=0.385 Sum_probs=141.4
Q ss_pred CccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 434 ~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
.+.|+++|+++. + .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||
T Consensus 37 ~~~l~i~nls~~--~--~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------- 98 (282)
T cd03291 37 DNNLFFSNLCLV--G--APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------- 98 (282)
T ss_pred CCeEEEEEEEEe--c--ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC--------------
Confidence 457999999985 2 3599999999999999999999999999999999999999999998876
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccC
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPF 593 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~ 593 (677)
.++|++|++.+|++|++||+.+.
T Consensus 99 ---------------------------------------------------------~i~yv~q~~~l~~~tv~enl~~~ 121 (282)
T cd03291 99 ---------------------------------------------------------RISFSSQFSWIMPGTIKENIIFG 121 (282)
T ss_pred ---------------------------------------------------------EEEEEeCcccccccCHHHHhhcc
Confidence 15677888888888999999764
Q ss_pred CCCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh--------------------
Q psy845 594 GRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK-------------------- 651 (677)
Q Consensus 594 ~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL-------------------- 651 (677)
....+.+..++++.+++.+.+..+|+++++.+ .+.+||||||||++||||++++|+++
T Consensus 122 ~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ 201 (282)
T cd03291 122 VSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFES 201 (282)
T ss_pred cccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHH
Confidence 33344556777888899999999999998877 67899999999999999999999876
Q ss_pred ----cccccce------ecccccccEEEEEeCCeeC
Q psy845 652 ----KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
..++.|| ...+..||+|++|++|+++
T Consensus 202 ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~ 237 (282)
T cd03291 202 CVCKLMANKTRILVTSKMEHLKKADKILILHEGSSY 237 (282)
T ss_pred HHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEE
Confidence 0124453 2234569999999999974
No 181
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.97 E-value=1.4e-31 Score=273.22 Aligned_cols=180 Identities=24% Similarity=0.350 Sum_probs=135.7
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++||+++|++. ++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++...+..
T Consensus 4 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~-------- 73 (250)
T PRK11264 4 IEVKNLVKKFHGQ--TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSL-------- 73 (250)
T ss_pred EEEeceEEEECCe--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccc--------
Confidence 7899999999753 599999999999999999999999999999999999999999999999987543000
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccC--
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPF-- 593 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~-- 593 (677)
+-...+...+|++++||||++.+|. .|++||+.+.
T Consensus 74 ------------------------------------------~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 111 (250)
T PRK11264 74 ------------------------------------------SQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPV 111 (250)
T ss_pred ------------------------------------------cchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHH
Confidence 0000034567889999999999885 7999999642
Q ss_pred --CCCCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 594 --GRCHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 594 --~~~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
..... +++.++++..++.+.. |. ...+||||||||++||||++++|+++
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~--~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~ 182 (250)
T PRK11264 112 IVKGEPKEEATARARELLAKVGLAGKE-------TS--YPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGE 182 (250)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCcchh-------hC--ChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHH
Confidence 11121 2244455555544321 11 56899999999999999999999976
Q ss_pred --------cccccce---ecc---cc-cccEEEEEeCCeeC
Q psy845 652 --------KKSGVNI---TRP---VT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~~~~TI---LsT---I~-~aDrIlVLd~GrIV 677 (677)
..+++|+ .|. +. -||||++|++|+++
T Consensus 183 l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~ 223 (250)
T PRK11264 183 VLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIV 223 (250)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 1135563 222 33 49999999999974
No 182
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.4e-31 Score=290.06 Aligned_cols=171 Identities=23% Similarity=0.353 Sum_probs=137.7
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.++++|++++|++. .+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 3 ~l~i~~l~~~~~~~--~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~---------- 70 (369)
T PRK11000 3 SVTLRNVTKAYGDV--VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDV---------- 70 (369)
T ss_pred EEEEEEEEEEeCCe--EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCC----------
Confidence 48999999999753 599999999999999999999999999999999999999999999999998665
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~ 594 (677)
+. .+++++||+|++.+|. .|++||+.++.
T Consensus 71 ------------------------------------------------~~--~~~~i~~v~Q~~~l~~~~tv~eni~~~~ 100 (369)
T PRK11000 71 ------------------------------------------------PP--AERGVGMVFQSYALYPHLSVAENMSFGL 100 (369)
T ss_pred ------------------------------------------------CH--hHCCEEEEeCCcccCCCCCHHHHHHhHH
Confidence 32 2467999999999985 59999997532
Q ss_pred ---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 ---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
..+ ++++.++++..++.++..+ ...+||||||||++|||||+++|+++
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~lgL~~~~~~---------~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~ 171 (369)
T PRK11000 101 KLAGAKKEEINQRVNQVAEVLQLAHLLDR---------KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQ 171 (369)
T ss_pred hhcCCCHHHHHHHHHHHHHHcCChhhhcC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 122 2346777888877655443 34689999999999999999999976
Q ss_pred --------ccc-ccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 --------KKS-GVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~~-~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
..+ +.|+ .|.. .-||||++|++|+++
T Consensus 172 l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~ 213 (369)
T PRK11000 172 MRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVA 213 (369)
T ss_pred HHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 112 5562 3332 349999999999974
No 183
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.97 E-value=1.7e-31 Score=269.31 Aligned_cols=174 Identities=28% Similarity=0.449 Sum_probs=131.3
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++||+++|++. ++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~---------- 68 (230)
T TIGR03410 1 LEVSNLNVYYGQS--HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLP---------- 68 (230)
T ss_pred CEEEeEEEEeCCe--EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCC----------
Confidence 4789999999753 6999999999999999999999999999999999999999999999999887651
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-chhhccccCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIRYNLDPFGR 595 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TIrENI~~~~~ 595 (677)
+.+..+++++|+||++.+|.. |++||+.+...
T Consensus 69 -----------------------------------------------~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 101 (230)
T TIGR03410 69 -----------------------------------------------PHERARAGIAYVPQGREIFPRLTVEENLLTGLA 101 (230)
T ss_pred -----------------------------------------------HHHHHHhCeEEeccCCcccCCCcHHHHHHHHHH
Confidence 122346789999999999975 99999964311
Q ss_pred ---CChHH-HHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------------------
Q psy845 596 ---CHDTE-LWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------------------- 651 (677)
Q Consensus 596 ---~sdee-I~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------------------- 651 (677)
..+++ ..++++..+. +++-.+. ...+||||||||++||||++++|+++
T Consensus 102 ~~~~~~~~~~~~~l~~~~~------l~~~~~~--~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~ 173 (230)
T TIGR03410 102 ALPRRSRKIPDEIYELFPV------LKEMLGR--RGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRV 173 (230)
T ss_pred hcCcchHHHHHHHHHHHHh------HHHHhhC--ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHH
Confidence 11111 2223333221 1111222 56799999999999999999999976
Q ss_pred ----cc-cccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 ----KK-SGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----~~-~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
.. .++|| .| .+. .||+|+++++|+++
T Consensus 174 l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~ 211 (230)
T TIGR03410 174 IRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVV 211 (230)
T ss_pred HHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 11 25673 22 234 49999999999974
No 184
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.5e-31 Score=275.21 Aligned_cols=180 Identities=28% Similarity=0.368 Sum_probs=140.2
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CccEEEECCEecccccHHH
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIASVELET 509 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-----~~G~I~IdG~dI~~l~~~~ 509 (677)
..++++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.+||.++.+.+
T Consensus 11 ~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~--- 85 (258)
T PRK14268 11 PQIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPD--- 85 (258)
T ss_pred eeEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEccccc---
Confidence 36999999999974 3599999999999999999999999999999999999985 7999999999875430
Q ss_pred hhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhc
Q psy845 510 LRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYN 589 (677)
Q Consensus 510 ~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrEN 589 (677)
.+...+|++++|++|++.+|+.|++||
T Consensus 86 -----------------------------------------------------~~~~~~~~~i~~v~q~~~~~~~tv~en 112 (258)
T PRK14268 86 -----------------------------------------------------VDVVELRKNVGMVFQKPNPFPMSIYDN 112 (258)
T ss_pred -----------------------------------------------------chHHHHhhhEEEEecCCccCcccHHHH
Confidence 033457888999999999999999999
Q ss_pred cccCC---CCCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 590 LDPFG---RCHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 590 I~~~~---~~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
+.+.. ..+. +++.++++.+++.+.+. +.+++ ...+||||||||++||||++++|+++
T Consensus 113 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~--~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~ 187 (258)
T PRK14268 113 VAYGPRIHGANKKDLDGVVENALRSAALWDETS---DRLKS--PALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDP 187 (258)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh---hhhcC--ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCH
Confidence 96421 1222 23566777777754322 22333 46799999999999999999999976
Q ss_pred ------------cccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 ------------KKSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+ +.||||++|++|+++
T Consensus 188 ~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 232 (258)
T PRK14268 188 ISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELI 232 (258)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 1235563 22 23 349999999999974
No 185
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.7e-31 Score=276.01 Aligned_cols=174 Identities=20% Similarity=0.292 Sum_probs=139.8
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
..|+++||+++|++ ..+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 6 ~~l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~--------- 74 (265)
T PRK10253 6 ARLRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHY--------- 74 (265)
T ss_pred cEEEEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhC---------
Confidence 46999999999975 3699999999999999999999999999999999999999999999999988766
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~ 593 (677)
+...+|+.++|+||++.+| +.|++||+.++
T Consensus 75 -------------------------------------------------~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~ 105 (265)
T PRK10253 75 -------------------------------------------------ASKEVARRIGLLAQNATTPGDITVQELVARG 105 (265)
T ss_pred -------------------------------------------------CHHHHhhheEEeeccCcCCCCCcHHHHHHhC
Confidence 5556677888899988887 46999998643
Q ss_pred C--C---------CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 594 G--R---------CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 594 ~--~---------~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
. . ..++++.++++..++.++..+ ...+||||||||++||||++++|+++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~ 176 (265)
T PRK10253 106 RYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ---------SVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDI 176 (265)
T ss_pred cccccccccCCCHHHHHHHHHHHHHcCCHHHhcC---------CcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCH
Confidence 1 0 112346677887777654332 46799999999999999999999976
Q ss_pred -------------cc-cccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 -------------KK-SGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------------~~-~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
.. .++|| .|. + ..||||++|++|+++
T Consensus 177 ~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 223 (265)
T PRK10253 177 SHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIV 223 (265)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 11 25563 232 2 349999999999974
No 186
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.1e-31 Score=273.97 Aligned_cols=179 Identities=25% Similarity=0.327 Sum_probs=139.0
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC--C---CccEEEECCEecccccHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE--L---SSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~--p---~~G~I~IdG~dI~~l~~~~~ 510 (677)
-++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++ | ++|+|.+||.++.+.+
T Consensus 12 ~l~i~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~---- 85 (259)
T PRK14274 12 VYQINGMNLWYGQH--HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK---- 85 (259)
T ss_pred eEEEeeEEEEECCe--eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccc----
Confidence 58999999999753 59999999999999999999999999999999999987 3 5899999999875320
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcc
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNL 590 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI 590 (677)
.+...+|++++|+||++.+|++|++||+
T Consensus 86 ----------------------------------------------------~~~~~~~~~i~~v~q~~~~~~~tv~enl 113 (259)
T PRK14274 86 ----------------------------------------------------VDLVELRKNIGMVFQKGNPFPQSIFDNV 113 (259)
T ss_pred ----------------------------------------------------cCHHHHhhceEEEecCCcccccCHHHHH
Confidence 0345678899999999999999999999
Q ss_pred ccCCC----CCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 591 DPFGR----CHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 591 ~~~~~----~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
.+... .++ +++.++++..++.+++... ++. .+.+||||||||++||||++++|+++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---l~~--~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~ 188 (259)
T PRK14274 114 AYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDR---LHT--QALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDP 188 (259)
T ss_pred HhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhh---hhC--CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 64321 122 2345567777776554321 222 56799999999999999999999976
Q ss_pred ------------cccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 ------------KKSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+++|+ .| .+ +.||||++|++|+++
T Consensus 189 ~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~ 233 (259)
T PRK14274 189 VSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELV 233 (259)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEE
Confidence 1234562 23 23 349999999999974
No 187
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.97 E-value=1.8e-31 Score=271.08 Aligned_cols=172 Identities=23% Similarity=0.307 Sum_probs=133.7
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+++|++++|++ +++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 3 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~----------- 69 (242)
T TIGR03411 3 LYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGL----------- 69 (242)
T ss_pred EEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCC-----------
Confidence 789999999975 3699999999999999999999999999999999999999999999999988665
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHH-HHhhhccccccccccccc-chhhccccCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELE-TLRSRLSVIPQDPVLFNG-TIRYNLDPFG 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~-~LR~~I~~V~Qd~~LFsg-TIrENI~~~~ 594 (677)
+.. ..|+.++|++|++.+|.+ |++||+.+..
T Consensus 70 -----------------------------------------------~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~ 102 (242)
T TIGR03411 70 -----------------------------------------------PEHQIARAGIGRKFQKPTVFENLTVFENLELAL 102 (242)
T ss_pred -----------------------------------------------CHHHHHhcCeeEeccccccCCCCCHHHHHHHhh
Confidence 222 235679999999999875 9999996531
Q ss_pred CC---------------ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------
Q psy845 595 RC---------------HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------- 651 (677)
Q Consensus 595 ~~---------------sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------- 651 (677)
.. .++++.++++..++.+.. +. ...+||||||||++||||++++|+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~--~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~ 173 (242)
T TIGR03411 103 PRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEA-------DR--LAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAG 173 (242)
T ss_pred hcccccccccccccHHHHHHHHHHHHHHcCCchhh-------cC--ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccC
Confidence 10 122345555555543322 22 45789999999999999999999976
Q ss_pred ---------------cccccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 ---------------KKSGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------------~~~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+. .||+|++|++|+++
T Consensus 174 LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~ 221 (242)
T TIGR03411 174 MTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVL 221 (242)
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEE
Confidence 1234563 22 233 49999999999974
No 188
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1e-31 Score=274.90 Aligned_cols=178 Identities=26% Similarity=0.375 Sum_probs=138.3
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCccEEEECCEecccccHHHhh
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE-----LSSGQIKIDDFDIASVELETLR 511 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~-----p~~G~I~IdG~dI~~l~~~~~~ 511 (677)
-+++||+++|++ +++++|+||++++||++||+||||||||||+++|+|+++ |++|+|.++|+++.+.+
T Consensus 6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~----- 78 (251)
T PRK14244 6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVD----- 78 (251)
T ss_pred EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcc-----
Confidence 368899999974 369999999999999999999999999999999999986 47999999999875540
Q ss_pred hhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccc
Q psy845 512 SRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLD 591 (677)
Q Consensus 512 ~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~ 591 (677)
.+...+|++++|+||++.+|++|++||+.
T Consensus 79 ---------------------------------------------------~~~~~~~~~i~~v~q~~~~~~~tv~~ni~ 107 (251)
T PRK14244 79 ---------------------------------------------------TNVVLLRAKVGMVFQKPNPFPKSIYDNVA 107 (251)
T ss_pred ---------------------------------------------------cchHHHhhhEEEEecCcccccCCHHHHHH
Confidence 02345788999999999999999999996
Q ss_pred cCC---C------CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 592 PFG---R------CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 592 ~~~---~------~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
+.. . ..++++.++++..++.+++... ++. .+.+||||||||++||||++++|+++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~--~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~ 182 (251)
T PRK14244 108 YGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDR---LKD--SAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDP 182 (251)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhH---hhc--ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 431 1 1124466778888876543221 111 46799999999999999999999976
Q ss_pred ------------cccccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 ------------KKSGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+. .||||++|++|+++
T Consensus 183 ~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~ 227 (251)
T PRK14244 183 VATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIV 227 (251)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEE
Confidence 1235663 22 333 49999999999974
No 189
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.7e-31 Score=272.76 Aligned_cols=179 Identities=26% Similarity=0.371 Sum_probs=140.2
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CccEEEECCEecccccHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-----~~G~I~IdG~dI~~l~~~~~ 510 (677)
-|+++||+++|++ .++++|+||++++||++||+||||||||||+++|+|+++| ++|+|.+||.++...+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~---- 76 (250)
T PRK14262 3 IIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQ---- 76 (250)
T ss_pred eEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccch----
Confidence 3889999999974 3699999999999999999999999999999999999984 8999999998875420
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcc
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNL 590 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI 590 (677)
.+...+|++++|++|++.+|+.|++||+
T Consensus 77 ----------------------------------------------------~~~~~~~~~i~~~~q~~~~~~~tv~e~l 104 (250)
T PRK14262 77 ----------------------------------------------------LDVTEYRKKVGMVFQKPTPFPMSIYDNV 104 (250)
T ss_pred ----------------------------------------------------hhHHHhhhhEEEEecCCccCcccHHHHH
Confidence 0345678899999999999999999999
Q ss_pred ccCC----CC----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 591 DPFG----RC----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 591 ~~~~----~~----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
.+.. .. .++++.++++..++++.+..+ .+. ...+||||||||++||||++++|+++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~--~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~ 179 (250)
T PRK14262 105 AFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSE---LNK--PGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDP 179 (250)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHH---HhC--ChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCH
Confidence 6421 11 123456677888876544322 111 56799999999999999999999976
Q ss_pred ------------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 ------------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+++|+ .|. + ..||||++|++|+++
T Consensus 180 ~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~ 224 (250)
T PRK14262 180 IATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELI 224 (250)
T ss_pred HHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 1234563 222 2 349999999999974
No 190
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.5e-31 Score=272.12 Aligned_cols=181 Identities=26% Similarity=0.372 Sum_probs=140.4
Q ss_pred CccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC--C---CccEEEECCEecccccHH
Q psy845 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE--L---SSGQIKIDDFDIASVELE 508 (677)
Q Consensus 434 ~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~--p---~~G~I~IdG~dI~~l~~~ 508 (677)
++.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++ | ++|+|.+||.++.+.+
T Consensus 2 ~~~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~-- 77 (252)
T PRK14256 2 NNKVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRG-- 77 (252)
T ss_pred CcEEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEccccc--
Confidence 356999999999975 369999999999999999999999999999999999986 4 6899999999885430
Q ss_pred HhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchh
Q psy845 509 TLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIR 587 (677)
Q Consensus 509 ~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIr 587 (677)
.+...+|+.++|+||++.+|. .|++
T Consensus 78 ------------------------------------------------------~~~~~~~~~i~~~~q~~~~~~~~tv~ 103 (252)
T PRK14256 78 ------------------------------------------------------VDPVSIRRRVGMVFQKPNPFPAMSIY 103 (252)
T ss_pred ------------------------------------------------------CChHHhhccEEEEecCCCCCCcCcHH
Confidence 033467888999999999987 6999
Q ss_pred hccccC----CCCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------
Q psy845 588 YNLDPF----GRCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------- 651 (677)
Q Consensus 588 ENI~~~----~~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------- 651 (677)
||+... +..+ ++++.++++..++.+++... .+. .+.+||||||||++||||++++|+++
T Consensus 104 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~--~~~~LS~G~~qrl~laral~~~p~llllDEP~~g 178 (252)
T PRK14256 104 DNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDR---LKS--NAMELSGGQQQRLCIARTIAVKPEVILMDEPASA 178 (252)
T ss_pred HHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHH---hhC--CcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 999642 1111 23456677788876554332 112 56799999999999999999999976
Q ss_pred ---------------cccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 ---------------KKSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------------~~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+ +.|||+++|++|+++
T Consensus 179 LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T PRK14256 179 LDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLV 226 (252)
T ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEE
Confidence 1134552 22 23 349999999999974
No 191
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.5e-31 Score=275.97 Aligned_cols=181 Identities=28% Similarity=0.356 Sum_probs=142.1
Q ss_pred CccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CccEEEECCEecccccHH
Q psy845 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIASVELE 508 (677)
Q Consensus 434 ~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-----~~G~I~IdG~dI~~l~~~ 508 (677)
.+.++++||+++|++. ++++|+||++++||.+||+||||||||||+++|+|+++| ++|+|.+||.++...+
T Consensus 23 ~~~l~~~nl~~~~~~~--~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~-- 98 (272)
T PRK14236 23 QTALEVRNLNLFYGDK--QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKK-- 98 (272)
T ss_pred CcEEEEEEEEEEECCe--eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccc--
Confidence 4569999999999653 699999999999999999999999999999999999984 8999999999875420
Q ss_pred HhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhh
Q psy845 509 TLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRY 588 (677)
Q Consensus 509 ~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrE 588 (677)
.+...+|+.++|++|++.+|++|++|
T Consensus 99 ------------------------------------------------------~~~~~~~~~i~~v~q~~~l~~~tv~e 124 (272)
T PRK14236 99 ------------------------------------------------------VDVAELRRRVGMVFQRPNPFPKSIYE 124 (272)
T ss_pred ------------------------------------------------------cCHHHHhccEEEEecCCccCcccHHH
Confidence 04456788999999999999999999
Q ss_pred ccccCC---CC-C----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------
Q psy845 589 NLDPFG---RC-H----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------- 651 (677)
Q Consensus 589 NI~~~~---~~-s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------- 651 (677)
|+.+.. .. . ++++.++++.+++.+.+... ++. .+.+||||||||++||||++++|+++
T Consensus 125 nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~--~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gL 199 (272)
T PRK14236 125 NVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDR---LHE--NAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSAL 199 (272)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHH---hhC--CcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccC
Confidence 996421 11 1 23467777777776554332 122 56899999999999999999999976
Q ss_pred --------------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 --------------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+++|+ .|. + +.||||++|++|+++
T Consensus 200 D~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~ 246 (272)
T PRK14236 200 DPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLV 246 (272)
T ss_pred CHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEE
Confidence 1234562 222 3 349999999999974
No 192
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.9e-31 Score=276.47 Aligned_cols=174 Identities=23% Similarity=0.318 Sum_probs=135.6
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++||+++|++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++...+
T Consensus 2 l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~---------- 69 (271)
T PRK13638 2 LATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSK---------- 69 (271)
T ss_pred eEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEccccc----------
Confidence 679999999975 35999999999999999999999999999999999999999999999999874210
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccc--ccccchhhccccCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV--LFNGTIRYNLDPFG 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~--LFsgTIrENI~~~~ 594 (677)
.+...+|++++||||++. ++..|+.||+.+..
T Consensus 70 ----------------------------------------------~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~ 103 (271)
T PRK13638 70 ----------------------------------------------RGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSL 103 (271)
T ss_pred ----------------------------------------------CCHHHHHhheEEEeeChhhccccccHHHHHHHHH
Confidence 034567788999999875 56778999986421
Q ss_pred ---CCCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 ---RCHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ---~~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
..+. +++.++++..++.++.. + ...+||||||||++||||++++|+++
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~--~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~ 174 (271)
T PRK13638 104 RNLGVPEAEITRRVDEALTLVDAQHFRH-------Q--PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQ 174 (271)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCHhHhc-------C--CchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 1222 23456677777655432 2 45799999999999999999999976
Q ss_pred --------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 --------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+++|| .|. + ..||||++|++|+++
T Consensus 175 l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~ 215 (271)
T PRK13638 175 MIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQIL 215 (271)
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 1135663 222 3 349999999999974
No 193
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.3e-31 Score=269.30 Aligned_cols=174 Identities=28% Similarity=0.464 Sum_probs=133.6
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-++++|++++|++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++...+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--------- 71 (241)
T PRK10895 3 TLTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLP--------- 71 (241)
T ss_pred eEEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC---------
Confidence 3789999999975 36999999999999999999999999999999999999999999999999886651
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~ 594 (677)
+.+..|+.++|+||++.+|. .|++||+....
T Consensus 72 ------------------------------------------------~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~ 103 (241)
T PRK10895 72 ------------------------------------------------LHARARRGIGYLPQEASIFRRLSVYDNLMAVL 103 (241)
T ss_pred ------------------------------------------------HHHHHHhCeEEeccCCcccccCcHHHHHhhhh
Confidence 22345778999999998887 59999997532
Q ss_pred C----CChH----HHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 595 R----CHDT----ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 595 ~----~sde----eI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
. .+.+ ++.+.++..++.+.. +. ...+||||||||++||||++++|+++
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~--~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 174 (241)
T PRK10895 104 QIRDDLSAEQREDRANELMEEFHIEHLR-------DS--MGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVI 174 (241)
T ss_pred hcccccCHHHHHHHHHHHHHHcCCHHHh-------hc--chhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 1 1111 233334443332211 11 56799999999999999999999976
Q ss_pred ---------cccccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 ---------KKSGVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~~~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
...++|+ .|.. +.||+|++|++|+++
T Consensus 175 ~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~ 216 (241)
T PRK10895 175 DIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLI 216 (241)
T ss_pred HHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEE
Confidence 1235663 2322 348999999999974
No 194
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.1e-31 Score=271.38 Aligned_cols=179 Identities=28% Similarity=0.385 Sum_probs=139.9
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCC-----ccEEEECCEecccccHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS-----SGQIKIDDFDIASVELETL 510 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~-----~G~I~IdG~dI~~l~~~~~ 510 (677)
.++++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|+ +|+|.+||.++.+.+
T Consensus 4 ~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~---- 77 (251)
T PRK14249 4 KIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPN---- 77 (251)
T ss_pred eEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccc----
Confidence 5899999999975 35999999999999999999999999999999999999997 699999998875430
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcc
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNL 590 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI 590 (677)
.+...+|+.++||||++.+|+.|++||+
T Consensus 78 ----------------------------------------------------~~~~~~~~~i~~v~q~~~~~~~tv~enl 105 (251)
T PRK14249 78 ----------------------------------------------------LDVVNLRKRVGMVFQQPNPFPKSIFDNV 105 (251)
T ss_pred ----------------------------------------------------cChHHhhceEEEEecCCccCcCcHHHHH
Confidence 0345678899999999999999999999
Q ss_pred ccCCC---CC-----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 591 DPFGR---CH-----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 591 ~~~~~---~s-----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
.+... .. ++.+.++++..++.+++..+ .+. .+.+||||||||++||||++++|+++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~~--~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~ 180 (251)
T PRK14249 106 AFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDN---LHK--SGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDP 180 (251)
T ss_pred hhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhH---hhC--CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 75321 11 23345566667766554322 122 57899999999999999999999976
Q ss_pred ------------cccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 ------------KKSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+ ..||+|++|++|+++
T Consensus 181 ~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~ 225 (251)
T PRK14249 181 VSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLV 225 (251)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEE
Confidence 1234563 22 22 348999999999973
No 195
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.97 E-value=9.6e-32 Score=290.88 Aligned_cols=160 Identities=28% Similarity=0.309 Sum_probs=132.2
Q ss_pred CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCcccccccccc
Q psy845 451 PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGR 530 (677)
Q Consensus 451 ~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~ 530 (677)
+.+|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~------------------------- 60 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQ------------------------- 60 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcC-------------------------
Confidence 3599999999999999999999999999999999999999999999999999877
Q ss_pred CCCCCchhHHHHHHhhhhccccccccccchhhhhHHHH----hhhcccccccccccc-cchhhccccCC---CC----Ch
Q psy845 531 TGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL----RSRLSVIPQDPVLFN-GTIRYNLDPFG---RC----HD 598 (677)
Q Consensus 531 n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~L----R~~I~~V~Qd~~LFs-gTIrENI~~~~---~~----sd 598 (677)
+..++ |++++||+|++.+|+ .|++||+.++. .. ..
T Consensus 61 ---------------------------------~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~ 107 (363)
T TIGR01186 61 ---------------------------------SPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERK 107 (363)
T ss_pred ---------------------------------CHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHHHcCCCHHHHH
Confidence 44455 678999999999996 69999996431 11 23
Q ss_pred HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------------c-c
Q psy845 599 TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------------K-K 653 (677)
Q Consensus 599 eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------------~-~ 653 (677)
+++.++++.+++.++..+. ..+||||||||++|||||+++|+++ . .
T Consensus 108 ~~~~~~l~~vgL~~~~~~~---------p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~ 178 (363)
T TIGR01186 108 EKALELLKLVGLEEYEHRY---------PDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQAT 178 (363)
T ss_pred HHHHHHHHhcCCchhhhCC---------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 4567788888887765543 4589999999999999999999976 1 1
Q ss_pred cccce---ecc----cccccEEEEEeCCeeC
Q psy845 654 SGVNI---TRP----VTSCDKVLVMDNGQAL 677 (677)
Q Consensus 654 ~~~TI---LsT----I~~aDrIlVLd~GrIV 677 (677)
.++|| .|. .+.||||++|++|+++
T Consensus 179 ~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv 209 (363)
T TIGR01186 179 LQKTIVFITHDLDEAIRIGDRIVIMKAGEIV 209 (363)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE
Confidence 26773 333 3459999999999984
No 196
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.97 E-value=1.8e-31 Score=281.38 Aligned_cols=172 Identities=33% Similarity=0.453 Sum_probs=134.2
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-|+++|++++|++. .+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.+.
T Consensus 4 ~i~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~---------- 71 (303)
T TIGR01288 4 AIDLVGVSKSYGDK--VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR---------- 71 (303)
T ss_pred EEEEEeEEEEeCCe--EEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc----------
Confidence 48999999999753 599999999999999999999999999999999999999999999999987543
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~ 594 (677)
+ ...|++++|+||++.++ ..|++||+....
T Consensus 72 ------------------------------------------------~-~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 102 (303)
T TIGR01288 72 ------------------------------------------------A-RLARVAIGVVPQFDNLDPEFTVRENLLVFG 102 (303)
T ss_pred ------------------------------------------------H-HHHhhcEEEEeccccCCcCCcHHHHHHHHH
Confidence 2 35678899999998888 469999996321
Q ss_pred ---CCChHH----HHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 ---RCHDTE----LWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ---~~sdee----I~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
..+.++ +.++++..++.+ ..++ ...+||||||||++||||++++|+++
T Consensus 103 ~~~~~~~~~~~~~~~~ll~~~~l~~-------~~~~--~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~ 173 (303)
T TIGR01288 103 RYFGMSTREIEAVIPSLLEFARLES-------KADV--RVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHL 173 (303)
T ss_pred HHcCCCHHHHHHHHHHHHHHCCChh-------HhcC--chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHH
Confidence 123222 334455554433 3344 35689999999999999999999976
Q ss_pred --------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 --------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+++|| .|. + +-||||++|++|+++
T Consensus 174 l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~ 214 (303)
T TIGR01288 174 IWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKI 214 (303)
T ss_pred HHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 1235663 222 3 249999999999974
No 197
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.8e-31 Score=273.65 Aligned_cols=177 Identities=26% Similarity=0.358 Sum_probs=138.1
Q ss_pred CccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCccEEEECCEecccccHH
Q psy845 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE-----LSSGQIKIDDFDIASVELE 508 (677)
Q Consensus 434 ~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~-----p~~G~I~IdG~dI~~l~~~ 508 (677)
...++++||+++|++. .+|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||.++...+
T Consensus 11 ~~~l~i~nl~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~-- 86 (269)
T PRK14259 11 NIIISLQNVTISYGTF--EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR-- 86 (269)
T ss_pred CceEEEEeEEEEECCE--EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc--
Confidence 3469999999999753 59999999999999999999999999999999999987 68999999999875320
Q ss_pred HhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhh
Q psy845 509 TLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRY 588 (677)
Q Consensus 509 ~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrE 588 (677)
.+..++|++++|+||++.+|..|++|
T Consensus 87 ------------------------------------------------------~~~~~~~~~i~~v~q~~~l~~~tv~e 112 (269)
T PRK14259 87 ------------------------------------------------------VDPVEVRRRIGMVFQQPNPFPKSIYE 112 (269)
T ss_pred ------------------------------------------------------CCHHHHhhceEEEccCCccchhhHHH
Confidence 04456788999999999999889999
Q ss_pred ccccCCC---C---ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 589 NLDPFGR---C---HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 589 NI~~~~~---~---sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
|+.+... . .++++.++++.+++.+.+.. ..+. ...+||||||||++||||++++|+++
T Consensus 113 nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~---~~~~--~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~ 187 (269)
T PRK14259 113 NIAFGARINGYTGDMDELVERSLRKAAVWDECKD---KLNE--SGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDP 187 (269)
T ss_pred HHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhh---hhCC--CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCH
Confidence 9975321 1 13445667777776543322 1222 46799999999999999999999976
Q ss_pred ------------cccccce---ecc---c-ccccEEEEEeC
Q psy845 652 ------------KKSGVNI---TRP---V-TSCDKVLVMDN 673 (677)
Q Consensus 652 ------------~~~~~TI---LsT---I-~~aDrIlVLd~ 673 (677)
..+++|| .|. + ..||||++|++
T Consensus 188 ~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 188 ISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEec
Confidence 1234552 222 2 35999999997
No 198
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.2e-31 Score=269.97 Aligned_cols=178 Identities=26% Similarity=0.434 Sum_probs=133.4
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-++++|++++|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~---------- 72 (237)
T PRK11614 5 MLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDW---------- 72 (237)
T ss_pred EEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCC----------
Confidence 4899999999975 3699999999999999999999999999999999999999999999999988765
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhH-HHHhhhcccccccccccc-cchhhccccC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL-ETLRSRLSVIPQDPVLFN-GTIRYNLDPF 593 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~-~~LR~~I~~V~Qd~~LFs-gTIrENI~~~ 593 (677)
+. +..|+.++|++|++.+|. .|++||+...
T Consensus 73 ------------------------------------------------~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 104 (237)
T PRK11614 73 ------------------------------------------------QTAKIMREAVAIVPEGRRVFSRMTVEENLAMG 104 (237)
T ss_pred ------------------------------------------------CHHHHHHhCEEEeccCcccCCCCcHHHHHHHh
Confidence 33 235778999999999997 4999999753
Q ss_pred CC-CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------------
Q psy845 594 GR-CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------------- 651 (677)
Q Consensus 594 ~~-~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------------- 651 (677)
.. .+.++..+.++. +.+.+..+.+..+. ...+||||||||++||||++++|+++
T Consensus 105 ~~~~~~~~~~~~~~~--~l~~~~~l~~~~~~--~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l 180 (237)
T PRK11614 105 GFFAERDQFQERIKW--VYELFPRLHERRIQ--RAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTI 180 (237)
T ss_pred hhccChhHHHHHHHH--HHHHHHHHHHHHhC--chhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHH
Confidence 21 122222221111 01111112111222 56799999999999999999999976
Q ss_pred ---cccccce---ecc----cccccEEEEEeCCeeC
Q psy845 652 ---KKSGVNI---TRP----VTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---~~~~~TI---LsT----I~~aDrIlVLd~GrIV 677 (677)
..+++|| .|. .+.||||++|++|+++
T Consensus 181 ~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (237)
T PRK11614 181 EQLREQGMTIFLVEQNANQALKLADRGYVLENGHVV 216 (237)
T ss_pred HHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEE
Confidence 1235673 232 2359999999999974
No 199
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.4e-31 Score=272.04 Aligned_cols=179 Identities=25% Similarity=0.333 Sum_probs=139.0
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcC---CCC--CccEEEECCEecccccHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRL---VEL--SSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~---y~p--~~G~I~IdG~dI~~l~~~~~ 510 (677)
.++++|++++|++ .++++|+||++++||++||+||||||||||+++|+|+ ++| ++|+|.+||.++.+.+
T Consensus 3 ~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~---- 76 (250)
T PRK14245 3 KIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKG---- 76 (250)
T ss_pred EEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEeccccc----
Confidence 4889999999975 3599999999999999999999999999999999997 444 5899999999875530
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcc
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNL 590 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI 590 (677)
.+...+|++++|+||++.+|+.|++||+
T Consensus 77 ----------------------------------------------------~~~~~~~~~i~~v~q~~~~~~~tv~~nl 104 (250)
T PRK14245 77 ----------------------------------------------------VQVDELRKNVGMVFQRPNPFPKSIFENV 104 (250)
T ss_pred ----------------------------------------------------ccHHHHhhheEEEecCCccCcccHHHHH
Confidence 0345678899999999999999999999
Q ss_pred ccCC---CC-----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 591 DPFG---RC-----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 591 ~~~~---~~-----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
.+.. .. .++++.++++..++.+++.... +. .+.+||||||||++||||++++|+++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---~~--~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~ 179 (250)
T PRK14245 105 AYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKL---KE--SAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDP 179 (250)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhh---hC--CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 6421 11 1234567777777765543221 11 56799999999999999999999976
Q ss_pred ------------cccccce---e---ccc-ccccEEEEEeCCeeC
Q psy845 652 ------------KKSGVNI---T---RPV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~~~TI---L---sTI-~~aDrIlVLd~GrIV 677 (677)
..+++|| . +.+ ..||||++|++|+++
T Consensus 180 ~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~ 224 (250)
T PRK14245 180 ISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMV 224 (250)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEE
Confidence 1234563 2 233 349999999999974
No 200
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.97 E-value=5.1e-31 Score=271.74 Aligned_cols=172 Identities=27% Similarity=0.363 Sum_probs=137.7
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~----------- 69 (258)
T PRK13548 3 LEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADW----------- 69 (258)
T ss_pred EEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccC-----------
Confidence 789999999975 3699999999999999999999999999999999999999999999999988766
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc-cccchhhccccCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-FNGTIRYNLDPFGR 595 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L-FsgTIrENI~~~~~ 595 (677)
+...++++++|++|++.+ ++.|++||+.+...
T Consensus 70 -----------------------------------------------~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 102 (258)
T PRK13548 70 -----------------------------------------------SPAELARRRAVLPQHSSLSFPFTVEEVVAMGRA 102 (258)
T ss_pred -----------------------------------------------CHHHhhhheEEEccCCcCCCCCCHHHHHHhhhc
Confidence 455667789999999887 67899999965321
Q ss_pred ---C----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHh------ccchhh-----------
Q psy845 596 ---C----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALL------RKTKKK----------- 651 (677)
Q Consensus 596 ---~----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALL------r~p~IL----------- 651 (677)
. .++++.++++..++.+...+ ...+||||||||++||||++ ++|+++
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~ 173 (258)
T PRK13548 103 PHGLSRAEDDALVAAALAQVDLAHLAGR---------DYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL 173 (258)
T ss_pred ccCCCcHHHHHHHHHHHHHcCCHhHhcC---------CcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCH
Confidence 1 12346667777777554322 45799999999999999999 588765
Q ss_pred -------------c-ccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 -------------K-KSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------------~-~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
. ..++|| .|. + ..||+|++|++|+++
T Consensus 174 ~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 220 (258)
T PRK13548 174 AHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLV 220 (258)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEE
Confidence 1 235663 222 3 259999999999974
No 201
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.3e-31 Score=277.47 Aligned_cols=178 Identities=29% Similarity=0.414 Sum_probs=136.2
Q ss_pred EEEEeeeEEeCCCC---CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 437 IKFKNVSLRYRDNW---PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 437 I~fknVsFsY~~~~---~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
|+++|++++|+++. .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+...
T Consensus 3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~------ 76 (287)
T PRK13641 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETG------ 76 (287)
T ss_pred EEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccc------
Confidence 78999999997431 369999999999999999999999999999999999999999999999998854300
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhccc
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYNLD 591 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrENI~ 591 (677)
.-+....|+.++|++|++ .+|+.|++||+.
T Consensus 77 ------------------------------------------------~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~ 108 (287)
T PRK13641 77 ------------------------------------------------NKNLKKLRKKVSLVFQFPEAQLFENTVLKDVE 108 (287)
T ss_pred ------------------------------------------------cchHHHHHhceEEEEeChhhhhccchHHHHHH
Confidence 003456778899999998 577889999996
Q ss_pred cCC---CCChH----HHHHHHHHccch-hhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------
Q psy845 592 PFG---RCHDT----ELWDALEKSHLK-SKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------ 651 (677)
Q Consensus 592 ~~~---~~sde----eI~~Al~~a~l~-efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------ 651 (677)
+.. ..+.+ .+.++++..++. ++.. . ...+||||||||++||||++++|+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-------~--~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~ 179 (287)
T PRK13641 109 FGPKNFGFSEDEAKEKALKWLKKVGLSEDLIS-------K--SPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPE 179 (287)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCChhHhh-------C--CcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHH
Confidence 421 12222 245556666654 2211 1 46799999999999999999999976
Q ss_pred ------------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 ------------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..++.|| .|. + +-||||++|++|+++
T Consensus 180 ~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~ 224 (287)
T PRK13641 180 GRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLI 224 (287)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 1235663 222 2 349999999999974
No 202
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.7e-31 Score=270.79 Aligned_cols=179 Identities=27% Similarity=0.362 Sum_probs=140.0
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CccEEEECCEecccccHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-----~~G~I~IdG~dI~~l~~~~~ 510 (677)
.++++|++++|++ +++|+|+||++++||++||+||||||||||+++|+|+++| ++|+|.+||.++.+.+
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~---- 77 (251)
T PRK14270 4 KMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKD---- 77 (251)
T ss_pred EEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccc----
Confidence 5899999999975 3699999999999999999999999999999999999885 7999999999885430
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcc
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNL 590 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI 590 (677)
.+....|+.++|+||++.+|+.|++||+
T Consensus 78 ----------------------------------------------------~~~~~~~~~i~~~~q~~~~~~~tv~enl 105 (251)
T PRK14270 78 ----------------------------------------------------VDVVELRKRVGMVFQKPNPFPMSIYDNV 105 (251)
T ss_pred ----------------------------------------------------ccHHHHHhheEEEecCCCcCCCcHHHHH
Confidence 0345678899999999999999999999
Q ss_pred ccCCC---C-C----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 591 DPFGR---C-H----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 591 ~~~~~---~-s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
.+... . + ++++.++++.+++.+.+... .+. ...+||||||||++||||++++|+++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~--~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~ 180 (251)
T PRK14270 106 AYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDD---LKK--SALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDP 180 (251)
T ss_pred HhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhH---hhC--CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 74321 1 1 23456677787775443322 111 56799999999999999999999976
Q ss_pred ------------cccccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 ------------KKSGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+. .||||++|++|+++
T Consensus 181 ~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~ 225 (251)
T PRK14270 181 ISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLI 225 (251)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEE
Confidence 1234552 22 233 39999999999974
No 203
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.5e-31 Score=276.57 Aligned_cols=175 Identities=25% Similarity=0.389 Sum_probs=137.8
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++||+++|+++ +++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.+++.-+
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~---------- 70 (275)
T PRK13639 2 LETRDLKYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDK---------- 70 (275)
T ss_pred EEEEEEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECcccc----------
Confidence 6899999999743 35999999999999999999999999999999999999999999999999884210
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhccccCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYNLDPFG 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrENI~~~~ 594 (677)
.+...+|++++|++|++ .+|+.|++||+.+..
T Consensus 71 ----------------------------------------------~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~ 104 (275)
T PRK13639 71 ----------------------------------------------KSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGP 104 (275)
T ss_pred ----------------------------------------------chHHHHHhheEEEeeChhhhhccccHHHHHHHHH
Confidence 03456788999999997 578899999996421
Q ss_pred ---CCCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 ---RCHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ---~~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
..+. +++.++++..++.++... ...+||||||||++||||++++|+++
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~~---------~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~ 175 (275)
T PRK13639 105 LNLGLSKEEVEKRVKEALKAVGMEGFENK---------PPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQ 175 (275)
T ss_pred HHcCCCHHHHHHHHHHHHHHCCCchhhcC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHH
Confidence 1222 345667777777543222 35799999999999999999999976
Q ss_pred --------cccccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 --------KKSGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+. .||||++|++|+++
T Consensus 176 l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~ 216 (275)
T PRK13639 176 IMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKII 216 (275)
T ss_pred HHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 1235663 22 333 49999999999974
No 204
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.5e-31 Score=277.16 Aligned_cols=183 Identities=25% Similarity=0.299 Sum_probs=136.2
Q ss_pred CccEEEEeeeEEeCCCC---CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHh
Q psy845 434 QGTIKFKNVSLRYRDNW---PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 434 ~g~I~fknVsFsY~~~~---~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~ 510 (677)
.+.|+++|++++|+++. .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+-..
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~--- 80 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLK--- 80 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccc---
Confidence 46799999999997542 259999999999999999999999999999999999999999999999998743100
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhh
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRY 588 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrE 588 (677)
...+...+|++++|++|++ .+|+.|++|
T Consensus 81 --------------------------------------------------~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e 110 (289)
T PRK13645 81 --------------------------------------------------KIKEVKRLRKEIGLVFQFPEYQLFQETIEK 110 (289)
T ss_pred --------------------------------------------------ccccHHHHhccEEEEEeCcchhhhhhHHHH
Confidence 0003456788999999997 477889999
Q ss_pred ccccCC---CCChHH----HHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------
Q psy845 589 NLDPFG---RCHDTE----LWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------- 651 (677)
Q Consensus 589 NI~~~~---~~sdee----I~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------- 651 (677)
|+.+.. ..+.++ +.++++..++ |+++.. -...+||||||||++||||++++|+++
T Consensus 111 nl~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~~~~~~-~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD 182 (289)
T PRK13645 111 DIAFGPVNLGENKQEAYKKVPELLKLVQL-------PEDYVK-RSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLD 182 (289)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------ChhHhc-CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCC
Confidence 996431 122222 2334444443 222111 146799999999999999999999976
Q ss_pred --------------cc-cccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 --------------KK-SGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------------~~-~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
.. .++|| .|. + +.||||++|++|+++
T Consensus 183 ~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~ 230 (289)
T PRK13645 183 PKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVI 230 (289)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 11 25663 332 2 359999999999974
No 205
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.97 E-value=2.3e-31 Score=275.86 Aligned_cols=176 Identities=22% Similarity=0.317 Sum_probs=136.6
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-|+++||+++|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+..
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~------- 77 (269)
T PRK11831 7 LVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRS------- 77 (269)
T ss_pred eEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChh-------
Confidence 4899999999964 3699999999999999999999999999999999999999999999999988765100
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-chhhccccC-
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIRYNLDPF- 593 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TIrENI~~~- 593 (677)
+...+|++++|++|++.+|.+ |++||+.+.
T Consensus 78 ------------------------------------------------~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~ 109 (269)
T PRK11831 78 ------------------------------------------------RLYTVRKRMSMLFQSGALFTDMNVFDNVAYPL 109 (269)
T ss_pred ------------------------------------------------hHHHHhhcEEEEecccccCCCCCHHHHHHHHH
Confidence 234567889999999999875 999999642
Q ss_pred ---CCCCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 594 ---GRCHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 594 ---~~~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
...+. +++.++++..++.+.... ...+||||||||++||||++++|+++
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 180 (269)
T PRK11831 110 REHTQLPAPLLHSTVMMKLEAVGLRGAAKL---------MPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMG 180 (269)
T ss_pred HHccCCCHHHHHHHHHHHHHHcCChhhhhC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence 11122 234455666665443222 45789999999999999999999876
Q ss_pred -------c--cc-ccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 -------K--KS-GVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------~--~~-~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
. .+ ++|| .|. + +.||+|++|++|+++
T Consensus 181 ~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~ 223 (269)
T PRK11831 181 VLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIV 223 (269)
T ss_pred HHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEE
Confidence 1 12 5663 332 2 349999999999974
No 206
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.97 E-value=2.6e-31 Score=280.10 Aligned_cols=171 Identities=23% Similarity=0.378 Sum_probs=136.4
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|++ ..+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~----------- 69 (301)
T TIGR03522 3 IRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQN----------- 69 (301)
T ss_pred EEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC-----------
Confidence 789999999974 3699999999999999999999999999999999999999999999999887552
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-chhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TIrENI~~~~- 594 (677)
...+|++++|+||++.+|.+ |++||+.+..
T Consensus 70 ------------------------------------------------~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~ 101 (301)
T TIGR03522 70 ------------------------------------------------PKEVQRNIGYLPEHNPLYLDMYVREYLQFIAG 101 (301)
T ss_pred ------------------------------------------------hHHHHhceEEecCCCCCCCCCcHHHHHHHHHH
Confidence 24577889999999988865 9999996422
Q ss_pred --CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 595 --RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 595 --~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
..+ .+++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l 172 (301)
T TIGR03522 102 IYGMKGQLLKQRVEEMIELVGLRPEQHK---------KIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEI 172 (301)
T ss_pred HcCCCHHHHHHHHHHHHHHCCCchHhcC---------chhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 112 2345666666666544322 45789999999999999999999976
Q ss_pred ------cccccce---e---cccc-cccEEEEEeCCeeC
Q psy845 652 ------KKSGVNI---T---RPVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------~~~~~TI---L---sTI~-~aDrIlVLd~GrIV 677 (677)
..+++|| . +.+. -||||++|++|+++
T Consensus 173 ~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~ 211 (301)
T TIGR03522 173 RNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIV 211 (301)
T ss_pred HHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 1235563 2 2233 39999999999974
No 207
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.9e-31 Score=288.49 Aligned_cols=172 Identities=25% Similarity=0.395 Sum_probs=138.6
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
..++++|++++|++ ..+|+|+||++++||.++|+||||||||||+++|+|+.+|++|+|.+||.++.+.
T Consensus 18 ~~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~--------- 86 (377)
T PRK11607 18 PLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHV--------- 86 (377)
T ss_pred ceEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCC---------
Confidence 35999999999975 3699999999999999999999999999999999999999999999999988665
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~ 593 (677)
+. .|+++|||+|++.||. .|++||+.++
T Consensus 87 -------------------------------------------------~~--~~r~ig~vfQ~~~lfp~ltv~eNi~~~ 115 (377)
T PRK11607 87 -------------------------------------------------PP--YQRPINMMFQSYALFPHMTVEQNIAFG 115 (377)
T ss_pred -------------------------------------------------CH--HHCCEEEEeCCCccCCCCCHHHHHHHH
Confidence 32 3678999999999995 5999999753
Q ss_pred C---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 594 G---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 594 ~---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
- +.+ .+++.++++..++.++..+ ...+||||||||+||||||+++|+++
T Consensus 116 l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~---------~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~ 186 (377)
T PRK11607 116 LKQDKLPKAEIASRVNEMLGLVHMQEFAKR---------KPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRD 186 (377)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchhhcC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 2 122 2345667777777655443 34689999999999999999999976
Q ss_pred ----------cccccc-e--ecc----cccccEEEEEeCCeeC
Q psy845 652 ----------KKSGVN-I--TRP----VTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----------~~~~~T-I--LsT----I~~aDrIlVLd~GrIV 677 (677)
...+.| | .|. ..-||||+||++|+++
T Consensus 187 ~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~ 229 (377)
T PRK11607 187 RMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFV 229 (377)
T ss_pred HHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEE
Confidence 112456 2 222 2349999999999974
No 208
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.5e-31 Score=277.41 Aligned_cols=174 Identities=29% Similarity=0.349 Sum_probs=135.7
Q ss_pred EEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccc
Q psy845 438 KFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVI 517 (677)
Q Consensus 438 ~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v 517 (677)
.++|++++|++. ++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+..
T Consensus 26 ~~~~~~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~--------- 94 (269)
T cd03294 26 SKEEILKKTGQT--VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRK--------- 94 (269)
T ss_pred hhhhhhhhcCCc--eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChh---------
Confidence 567899999753 699999999999999999999999999999999999999999999999998765110
Q ss_pred cCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHH-hhhccccccccccc-ccchhhccccCC-
Q psy845 518 PQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL-RSRLSVIPQDPVLF-NGTIRYNLDPFG- 594 (677)
Q Consensus 518 ~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~L-R~~I~~V~Qd~~LF-sgTIrENI~~~~- 594 (677)
+...+ +++++|+||++.+| +.|++||+.+..
T Consensus 95 ----------------------------------------------~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 128 (269)
T cd03294 95 ----------------------------------------------ELRELRRKKISMVFQSFALLPHRTVLENVAFGLE 128 (269)
T ss_pred ----------------------------------------------hhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHH
Confidence 11122 46799999999888 569999996421
Q ss_pred --CC----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 595 --RC----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 595 --~~----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
.. .++++.++++..++.++..+. ..+||||||||++||||++++|+++
T Consensus 129 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l 199 (269)
T cd03294 129 VQGVPRAEREERAAEALELVGLEGWEHKY---------PDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREM 199 (269)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCHhHhhCC---------cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHH
Confidence 11 124566778888877665443 3589999999999999999999976
Q ss_pred -----c--c-cccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 -----K--K-SGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----~--~-~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
. . .++|| .|. + +.||+|++|++|+++
T Consensus 200 ~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~ 240 (269)
T cd03294 200 QDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLV 240 (269)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 1 1 25663 332 2 349999999999974
No 209
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.2e-31 Score=269.80 Aligned_cols=177 Identities=25% Similarity=0.360 Sum_probs=138.7
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CccEEEECCEeccc-ccHHH
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIAS-VELET 509 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-----~~G~I~IdG~dI~~-l~~~~ 509 (677)
.++++|++++|++ +++|+|+||++++||++||+||||||||||+++|+|+++| ++|+|.+||.++.. .
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~---- 76 (249)
T PRK14253 3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNI---- 76 (249)
T ss_pred eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEccccc----
Confidence 4789999999975 3699999999999999999999999999999999999986 59999999988742 2
Q ss_pred hhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhc
Q psy845 510 LRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYN 589 (677)
Q Consensus 510 ~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrEN 589 (677)
+...+|+.++|++|++.+|..|++||
T Consensus 77 ------------------------------------------------------~~~~~~~~i~~~~q~~~~~~~tv~~~ 102 (249)
T PRK14253 77 ------------------------------------------------------DVADLRIKVGMVFQKPNPFPMSIYEN 102 (249)
T ss_pred ------------------------------------------------------chHHHHhheeEEecCCCcCcccHHHH
Confidence 45577889999999999999999999
Q ss_pred cccCC---CCC-----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------
Q psy845 590 LDPFG---RCH-----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------- 651 (677)
Q Consensus 590 I~~~~---~~s-----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------- 651 (677)
+.+.. ... ++++.++++..++.+.+.. .++. ...+||||||||++||||++++|+++
T Consensus 103 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~--~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD 177 (249)
T PRK14253 103 VAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKD---RLKS--HAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALD 177 (249)
T ss_pred HHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhH---Hhhc--CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCC
Confidence 97431 111 1334556777777654421 1222 46799999999999999999999976
Q ss_pred -------------cccccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 -------------KKSGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------------~~~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+. .||||++|++|+++
T Consensus 178 ~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~ 223 (249)
T PRK14253 178 PIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELV 223 (249)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 1234563 22 233 39999999999974
No 210
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.97 E-value=3.7e-31 Score=283.10 Aligned_cols=179 Identities=25% Similarity=0.382 Sum_probs=137.5
Q ss_pred cEEEEeeeEEeCCC-----------CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccc
Q psy845 436 TIKFKNVSLRYRDN-----------WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 504 (677)
Q Consensus 436 ~I~fknVsFsY~~~-----------~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~ 504 (677)
-++++|++++|+.+ ...+++|+||+|++||++||||+||||||||+++|+|+++|++|+|.+||.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 48999999999631 2469999999999999999999999999999999999999999999999999877
Q ss_pred ccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--ccc
Q psy845 505 VELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLF 582 (677)
Q Consensus 505 l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LF 582 (677)
.+.+ +...+|++++||+|+| .++
T Consensus 88 ~~~~-------------------------------------------------------~~~~~r~~i~~v~Q~~~~~l~ 112 (331)
T PRK15079 88 MKDD-------------------------------------------------------EWRAVRSDIQMIFQDPLASLN 112 (331)
T ss_pred CCHH-------------------------------------------------------HHHHHhCceEEEecCchhhcC
Confidence 6211 3445778899999998 466
Q ss_pred -ccchhhcccc----CC-CCChH----HHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-
Q psy845 583 -NGTIRYNLDP----FG-RCHDT----ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK- 651 (677)
Q Consensus 583 -sgTIrENI~~----~~-~~sde----eI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL- 651 (677)
..|+.||+.. .. ..+.+ .+.++++.+++.+ +-++. ...+||||||||++||||++++|+++
T Consensus 113 p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~------~~~~~--~p~~LSgG~~QRv~iArAL~~~P~lli 184 (331)
T PRK15079 113 PRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLP------NLINR--YPHEFSGGQCQRIGIARALILEPKLII 184 (331)
T ss_pred CCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh------HHhcC--CcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 5899999852 11 23333 3445666666632 11222 46799999999999999999999976
Q ss_pred -----------------------cc-cccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 -----------------------KK-SGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----------------------~~-~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
.. .+.|+ .| .+. -||||+||++|+++
T Consensus 185 lDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~iv 241 (331)
T PRK15079 185 CDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAV 241 (331)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 11 25562 33 333 39999999999985
No 211
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.9e-31 Score=273.87 Aligned_cols=180 Identities=27% Similarity=0.357 Sum_probs=137.6
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCccEEEECCEecccccHHH
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE-----LSSGQIKIDDFDIASVELET 509 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~-----p~~G~I~IdG~dI~~l~~~~ 509 (677)
.-++++|++++|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.+.+
T Consensus 23 ~~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~--- 97 (271)
T PRK14238 23 VVFDTQNLNLWYGED--HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKS--- 97 (271)
T ss_pred eEEEEeeeEEEECCc--ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccc---
Confidence 359999999999753 59999999999999999999999999999999999987 69999999999875320
Q ss_pred hhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhc
Q psy845 510 LRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYN 589 (677)
Q Consensus 510 ~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrEN 589 (677)
.+...+|++++|++|++.+|..|++||
T Consensus 98 -----------------------------------------------------~~~~~~~~~i~~v~q~~~~~~~tv~en 124 (271)
T PRK14238 98 -----------------------------------------------------YSVEELRTNVGMVFQKPNPFPKSIYDN 124 (271)
T ss_pred -----------------------------------------------------ccHHHHhhhEEEEecCCccccccHHHH
Confidence 034567889999999999999999999
Q ss_pred cccCC---CCCh-----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------
Q psy845 590 LDPFG---RCHD-----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------- 651 (677)
Q Consensus 590 I~~~~---~~sd-----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------- 651 (677)
+.+.. +.++ +++.++++..++.+.+.. .++. .+.+||||||||++||||++++|+++
T Consensus 125 i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~---~~~~--~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD 199 (271)
T PRK14238 125 VTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKD---RLHD--NAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199 (271)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHH---HHhc--CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCC
Confidence 97421 1222 223445555544332221 1222 57899999999999999999999976
Q ss_pred -------------cccccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 -------------KKSGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------------~~~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+. .||||++|++|+++
T Consensus 200 ~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~ 245 (271)
T PRK14238 200 PISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVN 245 (271)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEE
Confidence 1234563 22 333 49999999999974
No 212
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.8e-31 Score=269.52 Aligned_cols=179 Identities=25% Similarity=0.352 Sum_probs=141.2
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCccEEEECCEecccccHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE-----LSSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~-----p~~G~I~IdG~dI~~l~~~~~ 510 (677)
.++++||+++|++ +++++|+||++++||++||+||||||||||+++|+|+.+ |++|+|.+||+++.+.+
T Consensus 3 ~l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~---- 76 (250)
T PRK14266 3 RIEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPA---- 76 (250)
T ss_pred EEEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccc----
Confidence 3789999999974 359999999999999999999999999999999999865 48999999999875420
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcc
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNL 590 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI 590 (677)
.+...+|++++|+||++.+|++|++||+
T Consensus 77 ----------------------------------------------------~~~~~~~~~i~~~~q~~~~~~~t~~~nl 104 (250)
T PRK14266 77 ----------------------------------------------------VDVVELRKKVGMVFQKPNPFPKSIFDNV 104 (250)
T ss_pred ----------------------------------------------------ccHHHHhhheEEEecCCccCcchHHHHH
Confidence 0345678899999999999999999999
Q ss_pred ccCC---CC-C----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 591 DPFG---RC-H----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 591 ~~~~---~~-s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
.+.. .. + ++++.++++.+++.+++..+ ++. .+.+||||||||++||||++++|+++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~~--~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~ 179 (250)
T PRK14266 105 AYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK---LDK--SALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDP 179 (250)
T ss_pred HhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH---HhC--CcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCH
Confidence 7431 11 1 23456678888887765432 333 57799999999999999999999976
Q ss_pred ------------cccccce---ecc----cccccEEEEEeCCeeC
Q psy845 652 ------------KKSGVNI---TRP----VTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~~~TI---LsT----I~~aDrIlVLd~GrIV 677 (677)
..+++|| .|. ...||+|++|++|+++
T Consensus 180 ~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~ 224 (250)
T PRK14266 180 ISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEII 224 (250)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEE
Confidence 1234553 222 2348999999999974
No 213
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.97 E-value=4.2e-31 Score=264.14 Aligned_cols=168 Identities=24% Similarity=0.376 Sum_probs=134.6
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++||+++|++ .++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||+++.+.
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~----------- 65 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGL----------- 65 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccC-----------
Confidence 368999999962 56899999999999999999999999999999999999999999999987654
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccC-C
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPF-G 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~-~ 594 (677)
+ ..|+.++||+|++.+|. .|++||+.+. .
T Consensus 66 -----------------------------------------------~--~~~~~i~~v~q~~~~~~~~t~~en~~~~~~ 96 (213)
T TIGR01277 66 -----------------------------------------------A--PYQRPVSMLFQENNLFAHLTVRQNIGLGLH 96 (213)
T ss_pred -----------------------------------------------C--hhccceEEEeccCccCCCCcHHHHHHhHhh
Confidence 2 24678999999998886 5999999632 1
Q ss_pred -C-----CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 595 -R-----CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 595 -~-----~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
. ..++++.++++..++.+...+.| .+||||||||++||||++++|+++
T Consensus 97 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~ 167 (213)
T TIGR01277 97 PGLKLNAEQQEKVVDAAQQVGIADYLDRLP---------EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEM 167 (213)
T ss_pred ccCCccHHHHHHHHHHHHHcCcHHHhhCCc---------ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHH
Confidence 1 12345777888888876655433 589999999999999999999876
Q ss_pred -----c--c-cccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 -----K--K-SGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----~--~-~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
. . .++|| .| .+. .||++++|++|+++
T Consensus 168 ~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~ 208 (213)
T TIGR01277 168 LALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIK 208 (213)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEE
Confidence 1 1 25563 22 233 49999999999974
No 214
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.97 E-value=5.3e-31 Score=272.37 Aligned_cols=178 Identities=30% Similarity=0.439 Sum_probs=134.7
Q ss_pred EEEEeeeEEeCCC-------CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHH
Q psy845 437 IKFKNVSLRYRDN-------WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET 509 (677)
Q Consensus 437 I~fknVsFsY~~~-------~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~ 509 (677)
++++||+++|++. .+.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+..
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~- 81 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK- 81 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH-
Confidence 7899999999631 34699999999999999999999999999999999999999999999999998765110
Q ss_pred hhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccc--cc-ccch
Q psy845 510 LRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV--LF-NGTI 586 (677)
Q Consensus 510 ~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~--LF-sgTI 586 (677)
+...+|++++|++|++. ++ ..|+
T Consensus 82 ------------------------------------------------------~~~~~~~~i~~v~q~~~~~~~~~~tv 107 (265)
T TIGR02769 82 ------------------------------------------------------QRRAFRRDVQLVFQDSPSAVNPRMTV 107 (265)
T ss_pred ------------------------------------------------------HHHHHhhceEEEecChhhhcCCCCCH
Confidence 22346778999999873 43 4799
Q ss_pred hhccccC----CC----CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------
Q psy845 587 RYNLDPF----GR----CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------- 651 (677)
Q Consensus 587 rENI~~~----~~----~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------- 651 (677)
+||+... .. ..++++.++++..++.+.. .+. .+.+||||||||++||||++++|+++
T Consensus 108 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~------~~~--~~~~LSgGe~qrv~laral~~~p~illLDEPt~ 179 (265)
T TIGR02769 108 RQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSED------ADK--LPRQLSGGQLQRINIARALAVKPKLIVLDEAVS 179 (265)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhh------hhC--ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 9998421 11 1223456666666663211 111 56799999999999999999999976
Q ss_pred -----------------ccc-ccce---ecc---cc-cccEEEEEeCCeeC
Q psy845 652 -----------------KKS-GVNI---TRP---VT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----------------~~~-~~TI---LsT---I~-~aDrIlVLd~GrIV 677 (677)
..+ ++|| .|. +. .||+|++|++|+++
T Consensus 180 ~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 230 (265)
T TIGR02769 180 NLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIV 230 (265)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEE
Confidence 112 5673 332 33 49999999999974
No 215
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.7e-31 Score=269.03 Aligned_cols=170 Identities=28% Similarity=0.367 Sum_probs=137.3
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+++|++++|++. .+++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||+++.+.
T Consensus 1 l~~~~l~~~~~~~--~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~----------- 67 (232)
T cd03300 1 IELENVSKFYGGF--VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNL----------- 67 (232)
T ss_pred CEEEeEEEEeCCe--eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcC-----------
Confidence 4689999999753 699999999999999999999999999999999999999999999999988665
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-chhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TIrENI~~~~- 594 (677)
+. .|+.++|++|++.+|.+ |++||+.+..
T Consensus 68 -----------------------------------------------~~--~~~~i~~~~q~~~~~~~~t~~~nl~~~~~ 98 (232)
T cd03300 68 -----------------------------------------------PP--HKRPVNTVFQNYALFPHLTVFENIAFGLR 98 (232)
T ss_pred -----------------------------------------------Ch--hhcceEEEecccccCCCCcHHHHHHHHHH
Confidence 22 25689999999999864 9999996421
Q ss_pred ------CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 595 ------RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 595 ------~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
...++++.++++..++.++..+. ..+||||||||++||||++++|+++
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l 169 (232)
T cd03300 99 LKKLPKAEIKERVAEALDLVQLEGYANRK---------PSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDM 169 (232)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchhhcCC---------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 11234567778888887765543 3689999999999999999999976
Q ss_pred -----c--c-cccce---e---cccc-cccEEEEEeCCeeC
Q psy845 652 -----K--K-SGVNI---T---RPVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----~--~-~~~TI---L---sTI~-~aDrIlVLd~GrIV 677 (677)
. . .++|| . ..+. .||||++|++|+++
T Consensus 170 ~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~ 210 (232)
T cd03300 170 QLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQ 210 (232)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 1 1 26673 2 2333 48999999999973
No 216
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.8e-31 Score=269.63 Aligned_cols=179 Identities=26% Similarity=0.344 Sum_probs=138.1
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CccEEEECCEecccccHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-----~~G~I~IdG~dI~~l~~~~~ 510 (677)
-|+++|++++|++. .+|+|+||++++||++||+||||||||||+++|+|+.+| ++|+|.+||+++.+.+
T Consensus 6 ~i~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~---- 79 (253)
T PRK14261 6 ILSTKNLNLWYGEK--HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSG---- 79 (253)
T ss_pred eEEEeeeEEEECCe--eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccc----
Confidence 48999999999753 699999999999999999999999999999999999763 4899999999876530
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcc
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNL 590 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI 590 (677)
.+....|+.++|++|++.+|++|++||+
T Consensus 80 ----------------------------------------------------~~~~~~~~~i~~~~q~~~~~~~tv~eni 107 (253)
T PRK14261 80 ----------------------------------------------------ADVVALRRKIGMVFQRPNPFPKSIYENV 107 (253)
T ss_pred ----------------------------------------------------cchhhhhceEEEEecCCccCcccHHHHH
Confidence 0234667889999999999999999999
Q ss_pred ccCCC---C-C----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 591 DPFGR---C-H----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 591 ~~~~~---~-s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
.+... . . ++++.++++..++.+.+... ++. .+.+||||||||++||||++++|+++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~~--~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~ 182 (253)
T PRK14261 108 AYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDR---LHD--SALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDP 182 (253)
T ss_pred HhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHH---hhc--ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 75321 1 1 23455666776665443221 222 56799999999999999999999976
Q ss_pred ------------cccccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 ------------KKSGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+. .||+|++|++|+++
T Consensus 183 ~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~ 227 (253)
T PRK14261 183 IATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLI 227 (253)
T ss_pred HHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEE
Confidence 1234562 22 233 49999999999974
No 217
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.97 E-value=5.8e-31 Score=267.65 Aligned_cols=170 Identities=28% Similarity=0.369 Sum_probs=135.0
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|++. ++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 i~i~~l~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~----------- 67 (237)
T TIGR00968 1 IEIANISKRFGSF--QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRV----------- 67 (237)
T ss_pred CEEEEEEEEECCe--eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcC-----------
Confidence 4789999999753 699999999999999999999999999999999999999999999999987654
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-chhhccccCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIRYNLDPFGR 595 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TIrENI~~~~~ 595 (677)
+ ..|+.++|+||++.+|++ |++||+.+...
T Consensus 68 -----------------------------------------------~--~~~~~i~~~~q~~~~~~~~t~~enl~~~~~ 98 (237)
T TIGR00968 68 -----------------------------------------------H--ARDRKIGFVFQHYALFKHLTVRDNIAFGLE 98 (237)
T ss_pred -----------------------------------------------C--hhhcCEEEEecChhhccCCcHHHHHHhHHH
Confidence 2 136789999999999965 99999964321
Q ss_pred ---C----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 596 ---C----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 596 ---~----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
. .++++.++++..++.++..+ ...+|||||+||++||||++++|+++
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~ 169 (237)
T TIGR00968 99 IRKHPKAKIKARVEELLELVQLEGLGDR---------YPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKEL 169 (237)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCHhHhhC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 1 12345666666666544433 34689999999999999999999976
Q ss_pred -----c--cc-ccce---e---cccc-cccEEEEEeCCeeC
Q psy845 652 -----K--KS-GVNI---T---RPVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----~--~~-~~TI---L---sTI~-~aDrIlVLd~GrIV 677 (677)
. .+ ++|+ . +.+. .||||++|++|+++
T Consensus 170 ~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~ 210 (237)
T TIGR00968 170 RSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIE 210 (237)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEE
Confidence 1 12 5673 2 2233 39999999999974
No 218
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=8e-31 Score=270.82 Aligned_cols=184 Identities=24% Similarity=0.317 Sum_probs=142.3
Q ss_pred CCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CccEEEECCEecccccH
Q psy845 433 RQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIASVEL 507 (677)
Q Consensus 433 ~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-----~~G~I~IdG~dI~~l~~ 507 (677)
..+.|+++|++++|++. ++|+|+||++++||++||+||||||||||+++|+|+.+| ++|+|.+||.++...+
T Consensus 13 ~~~~l~~~~l~~~~~~~--~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~- 89 (265)
T PRK14252 13 TQQKSEVNKLNFYYGGY--QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS- 89 (265)
T ss_pred CCceEEEEEEEEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc-
Confidence 45679999999999753 699999999999999999999999999999999999875 7999999998764210
Q ss_pred HHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchh
Q psy845 508 ETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIR 587 (677)
Q Consensus 508 ~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIr 587 (677)
...+...+|+.++|++|++.+|.+|++
T Consensus 90 -----------------------------------------------------~~~~~~~~~~~i~~~~q~~~~~~~tv~ 116 (265)
T PRK14252 90 -----------------------------------------------------PEVDPIEVRMRISMVFQKPNPFPKSIF 116 (265)
T ss_pred -----------------------------------------------------cccCHHHHhccEEEEccCCcCCcchHH
Confidence 000345678899999999999999999
Q ss_pred hccccCC---C-----CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------
Q psy845 588 YNLDPFG---R-----CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------- 651 (677)
Q Consensus 588 ENI~~~~---~-----~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------- 651 (677)
||+.+.. . ..++++.++++.+++.+.+... .+. ...+||||||||++||||++++|+++
T Consensus 117 eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~~--~~~~LS~G~~qrv~laral~~~p~llllDEPt~g 191 (265)
T PRK14252 117 ENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDR---LGD--LAFNLSGGQQQRLCIARALATDPEILLFDEPTSA 191 (265)
T ss_pred HHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHH---HhC--CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 9997431 1 1235567778877775433322 111 46799999999999999999999976
Q ss_pred ---------------cccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 ---------------KKSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------------~~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+ +.||||++|++|+++
T Consensus 192 LD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~ 239 (265)
T PRK14252 192 LDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELI 239 (265)
T ss_pred CCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 1224552 22 23 359999999999974
No 219
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.1e-30 Score=270.21 Aligned_cols=153 Identities=25% Similarity=0.374 Sum_probs=123.8
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCccEEEECCEecccccHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE-----LSSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~-----p~~G~I~IdG~dI~~l~~~~~ 510 (677)
-++++||+++|++. ++|+|+||++++||++||+||||||||||+++|+|+++ |++|+|.+||.++...+
T Consensus 10 ~l~i~~v~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~---- 83 (264)
T PRK14243 10 VLRTENLNVYYGSF--LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPD---- 83 (264)
T ss_pred EEEEeeeEEEECCE--EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccc----
Confidence 48999999999753 69999999999999999999999999999999999986 48999999998874320
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcc
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNL 590 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI 590 (677)
.+...+|++++|++|++.+|+.|++||+
T Consensus 84 ----------------------------------------------------~~~~~~~~~i~~v~q~~~~~~~tv~enl 111 (264)
T PRK14243 84 ----------------------------------------------------VDPVEVRRRIGMVFQKPNPFPKSIYDNI 111 (264)
T ss_pred ----------------------------------------------------cChHHHhhhEEEEccCCccccccHHHHH
Confidence 0345678899999999999988999999
Q ss_pred ccCCC---C---ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 591 DPFGR---C---HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 591 ~~~~~---~---sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
.+... . .++++.++++.+++.+++... .+. .+.+||||||||++||||++++|+++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~~--~~~~LSgGq~qrv~laral~~~p~ll 173 (264)
T PRK14243 112 AYGARINGYKGDMDELVERSLRQAALWDEVKDK---LKQ--SGLSLSGGQQQRLCIARAIAVQPEVI 173 (264)
T ss_pred HhhhhhcCcchHHHHHHHHHHHHhCchhhHHHH---hcC--CcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 75321 1 134456677888876655322 122 56799999999999999999999976
No 220
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=8.2e-31 Score=279.99 Aligned_cols=179 Identities=22% Similarity=0.346 Sum_probs=136.5
Q ss_pred cEEEEeeeEEeCCC--------CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccH
Q psy845 436 TIKFKNVSLRYRDN--------WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL 507 (677)
Q Consensus 436 ~I~fknVsFsY~~~--------~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~ 507 (677)
-++++|++++|+.. ...+++||||+|++||++||||+||||||||+++|+|+++|++|+|.+||.|+.+.+.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 48999999999631 2469999999999999999999999999999999999999999999999999877621
Q ss_pred HHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccc--ccc-c
Q psy845 508 ETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV--LFN-G 584 (677)
Q Consensus 508 ~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~--LFs-g 584 (677)
. +.+.+|++++||+|||. |+. .
T Consensus 85 ~-------------------------------------------------------~~~~~r~~i~~v~Q~~~~~l~p~~ 109 (327)
T PRK11308 85 E-------------------------------------------------------AQKLLRQKIQIVFQNPYGSLNPRK 109 (327)
T ss_pred H-------------------------------------------------------HHHHHhCCEEEEEcCchhhcCCcc
Confidence 1 33456777888888873 443 4
Q ss_pred chhhcccc----CCCCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----
Q psy845 585 TIRYNLDP----FGRCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----- 651 (677)
Q Consensus 585 TIrENI~~----~~~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----- 651 (677)
|+.+|+.. ....+ .+++.++++.+++.+ ++++. ...+||||||||++|||||+.+|+++
T Consensus 110 ~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------~~~~~--~p~~LSgGq~QRv~iArAL~~~P~lLilDEP 181 (327)
T PRK11308 110 KVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP------EHYDR--YPHMFSGGQRQRIAIARALMLDPDVVVADEP 181 (327)
T ss_pred CHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh------HHhcC--CCccCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 78877741 11111 244677788887742 23343 45799999999999999999999976
Q ss_pred -------------------cc-cccce---e---cccc-cccEEEEEeCCeeC
Q psy845 652 -------------------KK-SGVNI---T---RPVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------------------~~-~~~TI---L---sTI~-~aDrIlVLd~GrIV 677 (677)
.. .+.|+ . +.+. -||||+||++|+|+
T Consensus 182 ts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 182 VSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 01 25562 2 3343 49999999999985
No 221
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.97 E-value=6.5e-31 Score=266.58 Aligned_cols=174 Identities=23% Similarity=0.254 Sum_probs=127.7
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcC--CCCCccEEEECCEecccccHHHhhhhc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRL--VELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~--y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
++++|++++|++ .++|+|+||++++||++||+||||||||||+++|+|+ ++|++|+|.+||.++.+.
T Consensus 1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~--------- 69 (243)
T TIGR01978 1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLEL--------- 69 (243)
T ss_pred CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCC---------
Confidence 478999999974 3699999999999999999999999999999999999 479999999999998776
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHH-Hhhhccccccccccccc-chhhcccc
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET-LRSRLSVIPQDPVLFNG-TIRYNLDP 592 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-LR~~I~~V~Qd~~LFsg-TIrENI~~ 592 (677)
+... .|..++||+|++.+|.+ |++||+..
T Consensus 70 -------------------------------------------------~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~ 100 (243)
T TIGR01978 70 -------------------------------------------------EPDERARAGLFLAFQYPEEIPGVSNLEFLRS 100 (243)
T ss_pred -------------------------------------------------CHHHhhccceEeeeccccccCCcCHHHHHHH
Confidence 3323 24457788888877754 78888742
Q ss_pred CC----C------CC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------
Q psy845 593 FG----R------CH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------- 651 (677)
Q Consensus 593 ~~----~------~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------- 651 (677)
.. . .+ ++++.++++..++.+.. .+.. .+.+||||||||++||||++++|+++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~-~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 173 (243)
T TIGR01978 101 ALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF------LNRS-VNEGFSGGEKKRNEILQMALLEPKLAILDEIDS 173 (243)
T ss_pred HHHHhhcccccccccHHHHHHHHHHHHHHcCCchhh------cccc-cccCcCHHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence 10 0 11 12345555555553211 1211 12359999999999999999999976
Q ss_pred -----------------cccccce---ec---cccc--ccEEEEEeCCeeC
Q psy845 652 -----------------KKSGVNI---TR---PVTS--CDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----------------~~~~~TI---Ls---TI~~--aDrIlVLd~GrIV 677 (677)
..+++|| .| .+.. ||+|++|++|+++
T Consensus 174 ~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~ 224 (243)
T TIGR01978 174 GLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIV 224 (243)
T ss_pred cCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEE
Confidence 1135663 23 2333 7999999999974
No 222
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.1e-30 Score=269.06 Aligned_cols=180 Identities=28% Similarity=0.357 Sum_probs=140.8
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CccEEEECCEecccccHHH
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIASVELET 509 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-----~~G~I~IdG~dI~~l~~~~ 509 (677)
+.++++||+++|++ +++++|+||++++||++||+|+||||||||+++|+|+++| ++|+|.+||+++.+.+
T Consensus 6 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~--- 80 (259)
T PRK14260 6 PAIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPR--- 80 (259)
T ss_pred ceEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccc---
Confidence 46999999999975 3599999999999999999999999999999999999985 4899999999875320
Q ss_pred hhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhc
Q psy845 510 LRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYN 589 (677)
Q Consensus 510 ~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrEN 589 (677)
.+.+.+|++++|++|++.+|+.|++||
T Consensus 81 -----------------------------------------------------~~~~~~~~~i~~v~q~~~l~~~tv~en 107 (259)
T PRK14260 81 -----------------------------------------------------ININRLRRQIGMVFQRPNPFPMSIYEN 107 (259)
T ss_pred -----------------------------------------------------cchHhhhhheEEEecccccCCccHHHH
Confidence 044567889999999999999999999
Q ss_pred cccCC----CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------
Q psy845 590 LDPFG----RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------- 651 (677)
Q Consensus 590 I~~~~----~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------- 651 (677)
+.+.. ... ++.+.++++.+++.+++... ++. .+.+||||||||++||||++++|+++
T Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~~--~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD 182 (259)
T PRK14260 108 VAYGVRISAKLPQADLDEIVESALKGAALWQEVKDK---LNK--SALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALD 182 (259)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhH---hcC--CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 96421 111 23356778888887654332 222 56799999999999999999999976
Q ss_pred -------------cccccce---ec---cc-ccccEEEEEe-----CCeeC
Q psy845 652 -------------KKSGVNI---TR---PV-TSCDKVLVMD-----NGQAL 677 (677)
Q Consensus 652 -------------~~~~~TI---Ls---TI-~~aDrIlVLd-----~GrIV 677 (677)
..+++|| .| .+ +.|||+++|+ +|+++
T Consensus 183 ~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~ 233 (259)
T PRK14260 183 PIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMV 233 (259)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEE
Confidence 1234563 22 22 3499999998 59874
No 223
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=9.9e-31 Score=268.88 Aligned_cols=179 Identities=26% Similarity=0.372 Sum_probs=137.1
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CccEEEECCEecccccHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-----~~G~I~IdG~dI~~l~~~~~ 510 (677)
.++++||+++|++. ++|+|+||++++||++||+||||||||||+++|+|+++| ++|+|.+||.++.+.+
T Consensus 4 ~l~i~~v~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~---- 77 (258)
T PRK14241 4 RIDVKDLNIYYGSF--HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPG---- 77 (258)
T ss_pred cEEEeeEEEEECCE--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccc----
Confidence 48999999999753 599999999999999999999999999999999999974 7999999999874320
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhc
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYN 589 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrEN 589 (677)
.+...+|+.++|++|++.+|. .|++||
T Consensus 78 ----------------------------------------------------~~~~~~~~~i~~~~q~~~~~~~~tv~~n 105 (258)
T PRK14241 78 ----------------------------------------------------VDPVAVRRTIGMVFQRPNPFPTMSIRDN 105 (258)
T ss_pred ----------------------------------------------------cChHHHhcceEEEccccccCCCCcHHHH
Confidence 034467888999999999886 699999
Q ss_pred cccCC---C-CC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------
Q psy845 590 LDPFG---R-CH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------- 651 (677)
Q Consensus 590 I~~~~---~-~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------- 651 (677)
+.+.. . .+ ++++.++++..++.+++.. ..+. ...+||||||||++||||++++|+++
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~--~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 180 (258)
T PRK14241 106 VVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKD---RLDK--PGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180 (258)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhh---HhhC--CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 96321 1 11 2345666777777544322 1222 56799999999999999999999976
Q ss_pred -------------cccccce---ec---cc-ccccEEEEEe------CCeeC
Q psy845 652 -------------KKSGVNI---TR---PV-TSCDKVLVMD------NGQAL 677 (677)
Q Consensus 652 -------------~~~~~TI---Ls---TI-~~aDrIlVLd------~GrIV 677 (677)
..+++|| .| .+ +.||||++|+ +|+++
T Consensus 181 ~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~ 232 (258)
T PRK14241 181 PISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLV 232 (258)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEE
Confidence 1234562 22 23 3599999997 79874
No 224
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.97 E-value=7.6e-31 Score=281.69 Aligned_cols=172 Identities=32% Similarity=0.470 Sum_probs=135.0
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-|+++|++++|++. .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.+.
T Consensus 41 ~i~i~nl~k~y~~~--~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~---------- 108 (340)
T PRK13536 41 AIDLAGVSKSYGDK--AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPAR---------- 108 (340)
T ss_pred eEEEEEEEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcc----------
Confidence 59999999999753 599999999999999999999999999999999999999999999999998653
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~ 594 (677)
+ ...|+.+||+||++.++ +.|++||+.+++
T Consensus 109 ------------------------------------------------~-~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~ 139 (340)
T PRK13536 109 ------------------------------------------------A-RLARARIGVVPQFDNLDLEFTVRENLLVFG 139 (340)
T ss_pred ------------------------------------------------h-HHHhccEEEEeCCccCCCCCcHHHHHHHHH
Confidence 2 35678888888888886 679999997432
Q ss_pred ---CCChHH----HHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 ---RCHDTE----LWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ---~~sdee----I~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
..+.++ +.++++..++ ++..++ ...+||||||||++||||++.+|+++
T Consensus 140 ~~~~~~~~~~~~~~~~ll~~~~L-------~~~~~~--~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~ 210 (340)
T PRK13536 140 RYFGMSTREIEAVIPSLLEFARL-------ESKADA--RVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHL 210 (340)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCC-------chhhCC--ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHH
Confidence 122222 3344444444 333444 34689999999999999999999976
Q ss_pred --------cccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 --------KKSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+ +-||||++|++|+++
T Consensus 211 l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~ 251 (340)
T PRK13536 211 IWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKI 251 (340)
T ss_pred HHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 1246673 22 23 349999999999984
No 225
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=6.4e-31 Score=276.96 Aligned_cols=173 Identities=34% Similarity=0.570 Sum_probs=139.2
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.++++||+.+|+++ ..+|+||||++++||.+|++|||||||||++|+|+|+..|++|+|.++|.|..+
T Consensus 4 ~i~~~~l~k~~~~~-~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~----------- 71 (293)
T COG1131 4 VIEVRNLTKKYGGD-KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVK----------- 71 (293)
T ss_pred eeeecceEEEeCCC-CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCcc-----------
Confidence 47889999999842 369999999999999999999999999999999999999999999999998755
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~ 594 (677)
+..+.|+++||+||++.++ ..|++||+.+..
T Consensus 72 ------------------------------------------------~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~ 103 (293)
T COG1131 72 ------------------------------------------------EPAKVRRRIGYVPQEPSLYPELTVRENLEFFA 103 (293)
T ss_pred ------------------------------------------------CHHHHHhheEEEccCCCCCccccHHHHHHHHH
Confidence 2446677777777777766 569999997543
Q ss_pred C-------CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 R-------CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ~-------~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
. ..++++.++++..++.+.- .....+||+|||||++||+||+.+|+++
T Consensus 104 ~l~~~~~~~~~~~~~~~l~~~~L~~~~---------~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~ 174 (293)
T COG1131 104 RLYGLSKEEAEERIEELLELFGLEDKA---------NKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRRE 174 (293)
T ss_pred HHhCCChhHHHHHHHHHHHHcCCchhh---------CcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHH
Confidence 1 1245788899999887621 1145789999999999999999999976
Q ss_pred --------cccc-cce--e----ccccc-ccEEEEEeCCeeC
Q psy845 652 --------KKSG-VNI--T----RPVTS-CDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~~~-~TI--L----sTI~~-aDrIlVLd~GrIV 677 (677)
..++ +|| . +.+.. ||||++|++|+++
T Consensus 175 ~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~ 216 (293)
T COG1131 175 IWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKII 216 (293)
T ss_pred HHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEE
Confidence 2234 674 2 22333 9999999999974
No 226
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.1e-30 Score=267.11 Aligned_cols=179 Identities=23% Similarity=0.304 Sum_probs=137.6
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC--C---CccEEEECCEecccccHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE--L---SSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~--p---~~G~I~IdG~dI~~l~~~~~ 510 (677)
-|+++||+++|++ +++|+|+||++++||++||+||||||||||+++|+|+++ | ++|+|.+||.++.+.+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~---- 78 (252)
T PRK14255 5 IITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPN---- 78 (252)
T ss_pred eEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccccc----
Confidence 4899999999975 369999999999999999999999999999999999975 5 5999999999875420
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcc
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNL 590 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI 590 (677)
.+...+|++++|++|++.+|+.|++||+
T Consensus 79 ----------------------------------------------------~~~~~~~~~i~~~~q~~~~~~~tv~~nl 106 (252)
T PRK14255 79 ----------------------------------------------------EDVVQLRKQVGMVFQQPNPFPFSIYENV 106 (252)
T ss_pred ----------------------------------------------------ccHHHhcCeEEEEECCCccCCCcHHHHH
Confidence 0345678899999999999999999999
Q ss_pred ccCC---CC-C----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 591 DPFG---RC-H----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 591 ~~~~---~~-s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
.+.. .. . ++++.++++.+++.+.+.. ..+. ...+||||||||++||||++++|+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~---~~~~--~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~ 181 (252)
T PRK14255 107 IYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKD---HLHE--SALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDP 181 (252)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhh---HHhc--CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCH
Confidence 6421 11 1 2345556677766544321 1222 56799999999999999999999976
Q ss_pred ------------cccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 ------------KKSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..++.|+ .| .+ +.||||++|++|+++
T Consensus 182 ~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T PRK14255 182 ISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLI 226 (252)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 1123452 22 23 349999999999974
No 227
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.3e-30 Score=266.39 Aligned_cols=179 Identities=25% Similarity=0.379 Sum_probs=135.2
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCC-----ccEEEECCEecccccHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS-----SGQIKIDDFDIASVELETL 510 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~-----~G~I~IdG~dI~~l~~~~~ 510 (677)
-++++||+++|++ +++++|+||++++||++||+||||||||||+++|+|+++|+ +|+|.+||.++.+.+
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~---- 77 (252)
T PRK14272 4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPR---- 77 (252)
T ss_pred EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCc----
Confidence 3789999999974 36999999999999999999999999999999999999874 899999999875420
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhc
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYN 589 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrEN 589 (677)
.+...+|+.++|++|++.+|. .|++||
T Consensus 78 ----------------------------------------------------~~~~~~~~~i~~~~q~~~~~~~~t~~en 105 (252)
T PRK14272 78 ----------------------------------------------------VDPVAMRRRVGMVFQKPNPFPTMSVFDN 105 (252)
T ss_pred ----------------------------------------------------cCHHHhhceeEEEeccCccCcCCCHHHH
Confidence 034467888999999999987 599999
Q ss_pred cccCC---CC-ChHHHHH----HHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------
Q psy845 590 LDPFG---RC-HDTELWD----ALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------- 651 (677)
Q Consensus 590 I~~~~---~~-sdeeI~~----Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------- 651 (677)
+.... .. .+++..+ .++..++.+. +++.+++ ...+||||||||++||||++++|+++
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---l~~~~~~--~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD 180 (252)
T PRK14272 106 VVAGLKLAGIRDRDHLMEVAERSLRGAALWDE---VKDRLKT--PATGLSGGQQQRLCIARALAVEPEILLMDEPTSALD 180 (252)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCcchh---hhhhhcC--CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 96421 11 2233322 3344444432 2333444 46799999999999999999999976
Q ss_pred -------------cccccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 -------------KKSGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------------~~~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+. -||||++|++|+++
T Consensus 181 ~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T PRK14272 181 PASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLV 226 (252)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 1234553 22 233 48999999999974
No 228
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.3e-30 Score=261.99 Aligned_cols=168 Identities=22% Similarity=0.353 Sum_probs=134.4
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++||+++|++. ..|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 2 l~~~~l~~~~~~~----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----------- 66 (232)
T PRK10771 2 LKLTDITWLYHHL----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTT----------- 66 (232)
T ss_pred eEEEEEEEEECCc----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcC-----------
Confidence 6899999999742 2399999999999999999999999999999999999999999999987654
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-chhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TIrENI~~~~- 594 (677)
+. .++.++|+||++.+|.+ |++||+.+..
T Consensus 67 -----------------------------------------------~~--~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 97 (232)
T PRK10771 67 -----------------------------------------------PP--SRRPVSMLFQENNLFSHLTVAQNIGLGLN 97 (232)
T ss_pred -----------------------------------------------Ch--hhccEEEEecccccccCCcHHHHHhcccc
Confidence 22 14678999999988874 9999996421
Q ss_pred -C-----CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 595 -R-----CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 595 -~-----~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
. ..++++.++++..++.+.+.+.| ..||||||||++||||++++|+++
T Consensus 98 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~ 168 (232)
T PRK10771 98 PGLKLNAAQREKLHAIARQMGIEDLLARLP---------GQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEM 168 (232)
T ss_pred cccCCCHHHHHHHHHHHHHcCcHHHHhCCc---------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 1 12345778888888877665543 589999999999999999999876
Q ss_pred -------cc-cccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 -------KK-SGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------~~-~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
.. .++|+ .| .+. .||||++|++|+++
T Consensus 169 ~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~ 209 (232)
T PRK10771 169 LTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIA 209 (232)
T ss_pred HHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 11 25563 22 233 48999999999974
No 229
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.5e-30 Score=272.46 Aligned_cols=180 Identities=25% Similarity=0.374 Sum_probs=139.9
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCccEEEECCEecccccHHH
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE-----LSSGQIKIDDFDIASVELET 509 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~-----p~~G~I~IdG~dI~~l~~~~ 509 (677)
..++++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++.+.+
T Consensus 38 ~~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~--- 112 (285)
T PRK14254 38 TVIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDAD--- 112 (285)
T ss_pred ceEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc---
Confidence 45899999999975 369999999999999999999999999999999999997 68999999999875430
Q ss_pred hhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhc
Q psy845 510 LRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYN 589 (677)
Q Consensus 510 ~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrEN 589 (677)
.+...+|++++|++|++.+|..|++||
T Consensus 113 -----------------------------------------------------~~~~~~~~~i~~v~q~~~l~~~tv~en 139 (285)
T PRK14254 113 -----------------------------------------------------VDPVALRRRIGMVFQKPNPFPKSIYDN 139 (285)
T ss_pred -----------------------------------------------------cchHhhhccEEEEecCCccCcCCHHHH
Confidence 034567889999999999998899999
Q ss_pred cccCC---CC---ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------
Q psy845 590 LDPFG---RC---HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------ 651 (677)
Q Consensus 590 I~~~~---~~---sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------ 651 (677)
+.+.. .. .++++.++++..++.+.+... ++. +..+||||||||++||||++++|+++
T Consensus 140 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~---~~~--~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~ 214 (285)
T PRK14254 140 VAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQ---LDS--SGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPV 214 (285)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHH---HhC--CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHH
Confidence 96421 11 234577788888776544321 122 56799999999999999999999976
Q ss_pred -----------cccccce---ecc---cc-cccEEE-EEeCCeeC
Q psy845 652 -----------KKSGVNI---TRP---VT-SCDKVL-VMDNGQAL 677 (677)
Q Consensus 652 -----------~~~~~TI---LsT---I~-~aDrIl-VLd~GrIV 677 (677)
..+++|| .|. +. -|||++ +|++|+++
T Consensus 215 ~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~ 259 (285)
T PRK14254 215 ATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELV 259 (285)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEE
Confidence 1123453 222 33 499975 57999974
No 230
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.4e-30 Score=252.91 Aligned_cols=141 Identities=37% Similarity=0.641 Sum_probs=120.6
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|++. ++|+|+||++++||.+||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 l~~~~l~~~~~~~--~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~----------- 67 (173)
T cd03230 1 IEVRNLSKRYGKK--TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKE----------- 67 (173)
T ss_pred CEEEEEEEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccc-----------
Confidence 4689999999753 599999999999999999999999999999999999999999999999987654
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-chhhccccCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIRYNLDPFGR 595 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TIrENI~~~~~ 595 (677)
+ ..+|+.++|++|++.+|.+ |++||+.
T Consensus 68 -----------------------------------------------~-~~~~~~i~~~~q~~~~~~~~tv~~~~~---- 95 (173)
T cd03230 68 -----------------------------------------------P-EEVKRRIGYLPEEPSLYENLTVRENLK---- 95 (173)
T ss_pred -----------------------------------------------h-HhhhccEEEEecCCccccCCcHHHHhh----
Confidence 3 4567889999999988875 9999973
Q ss_pred CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------------
Q psy845 596 CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------------ 651 (677)
Q Consensus 596 ~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------------ 651 (677)
||||||||++||||++++|+++
T Consensus 96 ----------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~ 141 (173)
T cd03230 96 ----------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLREL 141 (173)
T ss_pred ----------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999976
Q ss_pred cccccce---ec---ccc-cccEEEEEeCCee
Q psy845 652 KKSGVNI---TR---PVT-SCDKVLVMDNGQA 676 (677)
Q Consensus 652 ~~~~~TI---Ls---TI~-~aDrIlVLd~GrI 676 (677)
..++.|+ .| .+. .||+|++|++|++
T Consensus 142 ~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 142 KKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred HHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 1134552 22 233 5899999999985
No 231
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.97 E-value=7.9e-31 Score=264.38 Aligned_cols=171 Identities=23% Similarity=0.355 Sum_probs=129.0
Q ss_pred EEEEeeeEEeCCC--CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC---CCccEEEECCEecccccHHHhh
Q psy845 437 IKFKNVSLRYRDN--WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE---LSSGQIKIDDFDIASVELETLR 511 (677)
Q Consensus 437 I~fknVsFsY~~~--~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~---p~~G~I~IdG~dI~~l~~~~~~ 511 (677)
+.++||+++|+++ .+++++|+||++++||++||+||||||||||+++|+|+++ |++|+|.+||.++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~------- 76 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP------- 76 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh-------
Confidence 5799999999865 3679999999999999999999999999999999999999 999999999987521
Q ss_pred hhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-chhhcc
Q psy845 512 SRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIRYNL 590 (677)
Q Consensus 512 ~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TIrENI 590 (677)
..+|+.++|++|++.+|++ |++||+
T Consensus 77 ------------------------------------------------------~~~~~~i~~~~q~~~~~~~~tv~enl 102 (226)
T cd03234 77 ------------------------------------------------------DQFQKCVAYVRQDDILLPGLTVRETL 102 (226)
T ss_pred ------------------------------------------------------HHhcccEEEeCCCCccCcCCcHHHHH
Confidence 2467788999999888876 999999
Q ss_pred ccCCC----C-ChHH-----HHH-HHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------
Q psy845 591 DPFGR----C-HDTE-----LWD-ALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------- 651 (677)
Q Consensus 591 ~~~~~----~-sdee-----I~~-Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------- 651 (677)
.+... . .+++ ..+ .++..++.+. .++ ...+||||||||++||||++++|+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~--~~~~LS~G~~qrl~laral~~~p~illlDEP~~g 173 (226)
T cd03234 103 TYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRI-------GGN--LVKGISGGERRRVSIAVQLLWDPKVLILDEPTSG 173 (226)
T ss_pred HHHHHhhcccccchHHHHHHHHHHHHHhhcchhh-------hcc--cccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcC
Confidence 64211 0 0111 111 2222222111 111 45799999999999999999999876
Q ss_pred ----------------cccccce---eccc-----ccccEEEEEeCCeeC
Q psy845 652 ----------------KKSGVNI---TRPV-----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----------------~~~~~TI---LsTI-----~~aDrIlVLd~GrIV 677 (677)
..+++|+ .|.. +.||+|++|++|+++
T Consensus 174 LD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~ 223 (226)
T cd03234 174 LDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIV 223 (226)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEE
Confidence 1235562 3332 349999999999984
No 232
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.8e-30 Score=269.23 Aligned_cols=179 Identities=24% Similarity=0.306 Sum_probs=138.0
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CccEEEECCEecccccHHH
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIASVELET 509 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-----~~G~I~IdG~dI~~l~~~~ 509 (677)
..++++||+++|++ .++++|+||++++||++||+||||||||||+++|+|+++| ++|+|.+||.++.+.+
T Consensus 20 ~~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~--- 94 (276)
T PRK14271 20 PAMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYR--- 94 (276)
T ss_pred cEEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccc---
Confidence 35899999999975 3699999999999999999999999999999999999986 7999999999876540
Q ss_pred hhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhc
Q psy845 510 LRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYN 589 (677)
Q Consensus 510 ~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrEN 589 (677)
+...+|++++|++|++.+|+.|++||
T Consensus 95 ------------------------------------------------------~~~~~~~~i~~v~q~~~l~~~tv~en 120 (276)
T PRK14271 95 ------------------------------------------------------DVLEFRRRVGMLFQRPNPFPMSIMDN 120 (276)
T ss_pred ------------------------------------------------------hhHHHhhheEEeccCCccCCccHHHH
Confidence 23467889999999999999999999
Q ss_pred cccCC----CCChHHH----HHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------
Q psy845 590 LDPFG----RCHDTEL----WDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------- 651 (677)
Q Consensus 590 I~~~~----~~sdeeI----~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------- 651 (677)
+.+.. ..++++. .++++..++.+.... -++. .+.+||||||||++||||++++|+++
T Consensus 121 i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~l~~--~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD 195 (276)
T PRK14271 121 VLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKD---RLSD--SPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALD 195 (276)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhh---HhhC--CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 97431 1233333 344555555433211 1111 56799999999999999999999976
Q ss_pred -------------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 -------------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+++|| .|. + ..||||++|++|+++
T Consensus 196 ~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~ 241 (276)
T PRK14271 196 PTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLV 241 (276)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 1123553 222 2 349999999999974
No 233
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.9e-30 Score=251.57 Aligned_cols=142 Identities=44% Similarity=0.735 Sum_probs=123.4
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|++..+++++|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.++.+.
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~----------- 69 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDL----------- 69 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhc-----------
Confidence 468999999976434699999999999999999999999999999999999999999999999988766
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRC 596 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~ 596 (677)
+...+|++++|++|++.+|+.|++||+
T Consensus 70 -----------------------------------------------~~~~~~~~i~~~~~~~~~~~~t~~e~l------ 96 (171)
T cd03228 70 -----------------------------------------------DLESLRKNIAYVPQDPFLFSGTIRENI------ 96 (171)
T ss_pred -----------------------------------------------CHHHHHhhEEEEcCCchhccchHHHHh------
Confidence 555678889999999999999999997
Q ss_pred ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------------cc
Q psy845 597 HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-----------------------KK 653 (677)
Q Consensus 597 sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-----------------------~~ 653 (677)
||||||||++||||++++|+++ ..
T Consensus 97 ---------------------------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~ 143 (171)
T cd03228 97 ---------------------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA 143 (171)
T ss_pred ---------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999876 12
Q ss_pred cccce---e---cccccccEEEEEeCCe
Q psy845 654 SGVNI---T---RPVTSCDKVLVMDNGQ 675 (677)
Q Consensus 654 ~~~TI---L---sTI~~aDrIlVLd~Gr 675 (677)
+++|| . ..+..||++++|++|+
T Consensus 144 ~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 144 KGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred CCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 34563 2 2345599999999996
No 234
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.8e-30 Score=253.29 Aligned_cols=143 Identities=38% Similarity=0.544 Sum_probs=122.3
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+++|++++|++ +++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~----------- 67 (178)
T cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDL----------- 67 (178)
T ss_pred CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccc-----------
Confidence 478999999975 3699999999999999999999999999999999999999999999999988765
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhh--HHHHhhhcccccccccccc-cchhhccccC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE--LETLRSRLSVIPQDPVLFN-GTIRYNLDPF 593 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~--~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~ 593 (677)
+ ....|+.++|++|++.+|. .|++||+...
T Consensus 68 -----------------------------------------------~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~ 100 (178)
T cd03229 68 -----------------------------------------------EDELPPLRRRIGMVFQDFALFPHLTVLENIALG 100 (178)
T ss_pred -----------------------------------------------chhHHHHhhcEEEEecCCccCCCCCHHHheeec
Confidence 3 4567889999999999885 5999999642
Q ss_pred CCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------------
Q psy845 594 GRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------------- 651 (677)
Q Consensus 594 ~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------------- 651 (677)
||||||||++||||++++|+++
T Consensus 101 ------------------------------------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~ 144 (178)
T cd03229 101 ------------------------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLK 144 (178)
T ss_pred ------------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 9999999999999999999976
Q ss_pred --ccc-ccce---ec---ccc-cccEEEEEeCCe
Q psy845 652 --KKS-GVNI---TR---PVT-SCDKVLVMDNGQ 675 (677)
Q Consensus 652 --~~~-~~TI---Ls---TI~-~aDrIlVLd~Gr 675 (677)
..+ ++|+ .| .+. .||+|++|++|+
T Consensus 145 ~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 145 SLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 112 4663 22 233 499999999996
No 235
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.1e-30 Score=267.39 Aligned_cols=180 Identities=29% Similarity=0.386 Sum_probs=140.5
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCC-----ccEEEECCEecccccHHH
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS-----SGQIKIDDFDIASVELET 509 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~-----~G~I~IdG~dI~~l~~~~ 509 (677)
+.++++||+++|++. .+|+|+||++++||++||+||||||||||+++|+|+++|+ +|+|.+||.++...
T Consensus 6 ~~l~~~nl~~~~~~~--~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~---- 79 (261)
T PRK14258 6 PAIKVNNLSFYYDTQ--KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYER---- 79 (261)
T ss_pred ceEEEeeEEEEeCCe--eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhcc----
Confidence 469999999999653 5999999999999999999999999999999999999985 78888888876422
Q ss_pred hhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhc
Q psy845 510 LRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYN 589 (677)
Q Consensus 510 ~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrEN 589 (677)
..+...+|+.++|++|++.+|..|++||
T Consensus 80 ----------------------------------------------------~~~~~~~~~~i~~~~q~~~l~~~tv~en 107 (261)
T PRK14258 80 ----------------------------------------------------RVNLNRLRRQVSMVHPKPNLFPMSVYDN 107 (261)
T ss_pred ----------------------------------------------------ccchHHhhccEEEEecCCccCcccHHHH
Confidence 0034567889999999999999999999
Q ss_pred cccCC---C-CC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------
Q psy845 590 LDPFG---R-CH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------- 651 (677)
Q Consensus 590 I~~~~---~-~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------- 651 (677)
+.+.. . .+ ++++.++++..++.+++..+ .+. .+.+||||||||++||||++++|+++
T Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~--~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD 182 (261)
T PRK14258 108 VAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHK---IHK--SALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLD 182 (261)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhH---hcC--CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 96421 1 11 23456778888876655432 122 46799999999999999999999976
Q ss_pred ------------c--c-cccce---ec---cc-ccccEEEEEeC-----CeeC
Q psy845 652 ------------K--K-SGVNI---TR---PV-TSCDKVLVMDN-----GQAL 677 (677)
Q Consensus 652 ------------~--~-~~~TI---Ls---TI-~~aDrIlVLd~-----GrIV 677 (677)
. . .++|| .| .+ +.||||++|++ |+++
T Consensus 183 ~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 183 PIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 1 1 25663 22 23 34899999999 9874
No 236
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.9e-30 Score=258.30 Aligned_cols=158 Identities=25% Similarity=0.336 Sum_probs=127.3
Q ss_pred cEEEEeeeEEeCCC--CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC---CCccEEEECCEecccccHHHh
Q psy845 436 TIKFKNVSLRYRDN--WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE---LSSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 436 ~I~fknVsFsY~~~--~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~---p~~G~I~IdG~dI~~l~~~~~ 510 (677)
.+.++||+|.|+.+ +.++|+|+||++++||++||+||||||||||+++|+|+++ |++|+|.+||.++.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~----- 77 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEF----- 77 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccc-----
Confidence 47899999999753 4579999999999999999999999999999999999999 8999999999987654
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhc
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYN 589 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrEN 589 (677)
+ ...|++++|++|++.+|. .|++||
T Consensus 78 -----------------------------------------------------~-~~~~~~i~~~~q~~~~~~~~tv~~~ 103 (202)
T cd03233 78 -----------------------------------------------------A-EKYPGEIIYVSEEDVHFPTLTVRET 103 (202)
T ss_pred -----------------------------------------------------h-hhhcceEEEEecccccCCCCcHHHH
Confidence 2 346778999999988886 599999
Q ss_pred cccCCCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------
Q psy845 590 LDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------ 651 (677)
Q Consensus 590 I~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------ 651 (677)
+.+.... + .+. ....||||||||++||||++++|+++
T Consensus 104 l~~~~~~---------~--------------~~~--~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~ 158 (202)
T cd03233 104 LDFALRC---------K--------------GNE--FVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEIL 158 (202)
T ss_pred Hhhhhhh---------c--------------ccc--chhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHH
Confidence 9643110 0 122 34689999999999999999999976
Q ss_pred ------ccc-ccc-e--ecc-----cccccEEEEEeCCeeC
Q psy845 652 ------KKS-GVN-I--TRP-----VTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------~~~-~~T-I--LsT-----I~~aDrIlVLd~GrIV 677 (677)
..+ +.| + .++ .+.||+|++|++|+++
T Consensus 159 ~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~ 199 (202)
T cd03233 159 KCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQI 199 (202)
T ss_pred HHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEE
Confidence 112 344 2 222 2459999999999974
No 237
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.7e-30 Score=272.07 Aligned_cols=180 Identities=25% Similarity=0.302 Sum_probs=138.6
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCccEEEECCEecccccHHH
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE-----LSSGQIKIDDFDIASVELET 509 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~-----p~~G~I~IdG~dI~~l~~~~ 509 (677)
..++++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.+||.++....
T Consensus 38 ~~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~--- 112 (286)
T PRK14275 38 PHVVAKNFSIYYGEF--EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKF--- 112 (286)
T ss_pred eEEEEeeeEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcc---
Confidence 458999999999753 59999999999999999999999999999999999865 49999999999875430
Q ss_pred hhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhc
Q psy845 510 LRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYN 589 (677)
Q Consensus 510 ~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrEN 589 (677)
.+...+|++++|++|++.+|++|++||
T Consensus 113 -----------------------------------------------------~~~~~~~~~i~~v~q~~~l~~~tv~en 139 (286)
T PRK14275 113 -----------------------------------------------------TDEVLLRKKIGMVFQKPNPFPKSIFDN 139 (286)
T ss_pred -----------------------------------------------------cchHHhhhcEEEECCCCCCCccCHHHH
Confidence 023457889999999999998899999
Q ss_pred cccCC---CC-C----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------
Q psy845 590 LDPFG---RC-H----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------- 651 (677)
Q Consensus 590 I~~~~---~~-s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------- 651 (677)
+.+.. .. + ++++.++++..++.+.+. +.++. ...+||||||||++||||++++|+++
T Consensus 140 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~~~~~--~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD 214 (286)
T PRK14275 140 IAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS---DRLDK--NALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALD 214 (286)
T ss_pred HHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh---hHhhC--ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 97431 11 1 234556677777654332 22233 56799999999999999999999976
Q ss_pred -------------cccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 -------------KKSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------------~~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
...++|| .| .+ ..||||++|++|+++
T Consensus 215 ~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~ 260 (286)
T PRK14275 215 PKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLV 260 (286)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 1134452 22 22 349999999999974
No 238
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.97 E-value=1.2e-30 Score=275.14 Aligned_cols=163 Identities=26% Similarity=0.438 Sum_probs=128.0
Q ss_pred EeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCcccc
Q psy845 445 RYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF 524 (677)
Q Consensus 445 sY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf 524 (677)
+|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.+.
T Consensus 2 ~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~------------------- 60 (302)
T TIGR01188 2 VYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE------------------- 60 (302)
T ss_pred eeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC-------------------
Confidence 5653 3699999999999999999999999999999999999999999999999987543
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-chhhccccCC---CCC---
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIRYNLDPFG---RCH--- 597 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TIrENI~~~~---~~s--- 597 (677)
...+|++++|+||++.+|.. |++||+.+.. ..+
T Consensus 61 ----------------------------------------~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 100 (302)
T TIGR01188 61 ----------------------------------------PRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDE 100 (302)
T ss_pred ----------------------------------------HHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHH
Confidence 23567889999999888864 9999996432 112
Q ss_pred -hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------------c
Q psy845 598 -DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------------K 652 (677)
Q Consensus 598 -deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------------~ 652 (677)
++++.++++..++.+.. +. ...+||||||||++||||++++|+++ .
T Consensus 101 ~~~~~~~~l~~~~l~~~~-------~~--~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~ 171 (302)
T TIGR01188 101 AEERAEELLELFELGEAA-------DR--PVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALK 171 (302)
T ss_pred HHHHHHHHHHHcCChhHh-------CC--chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 23466677777765432 22 45789999999999999999999976 1
Q ss_pred ccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 653 KSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 653 ~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
.+++|| .|. + +.||||++|++|+++
T Consensus 172 ~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~ 203 (302)
T TIGR01188 172 EEGVTILLTTHYMEEADKLCDRIAIIDHGRII 203 (302)
T ss_pred hCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 235663 222 3 249999999999974
No 239
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.97 E-value=1.1e-30 Score=258.61 Aligned_cols=148 Identities=29% Similarity=0.390 Sum_probs=119.4
Q ss_pred EEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccccc
Q psy845 439 FKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIP 518 (677)
Q Consensus 439 fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~ 518 (677)
++||+++|++ +++++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++++++..
T Consensus 1 i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~---------- 68 (206)
T TIGR03608 1 LKNISKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSK---------- 68 (206)
T ss_pred CcceEEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchh----------
Confidence 4699999975 3699999999999999999999999999999999999999999999999997654100
Q ss_pred CCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC---
Q psy845 519 QDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG--- 594 (677)
Q Consensus 519 q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~--- 594 (677)
...+..|+.++|++|++.+|. .|++||+.+..
T Consensus 69 --------------------------------------------~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~ 104 (206)
T TIGR03608 69 --------------------------------------------KASKFRREKLGYLFQNFALIENETVEENLDLGLKYK 104 (206)
T ss_pred --------------------------------------------hHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhc
Confidence 023356788999999999986 79999996421
Q ss_pred CC----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 595 RC----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 595 ~~----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
.. .++++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 105 ~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~lS~G~~qr~~laral~~~p~ll 156 (206)
T TIGR03608 105 KLSKKEKREKKKEALEKVGLNLKLKQ---------KIYELSGGEQQRVALARAILKDPPLI 156 (206)
T ss_pred CCCHHHHHHHHHHHHHHcCchhhhcC---------ChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 11 23456677777777544322 35689999999999999999999976
No 240
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.6e-30 Score=272.15 Aligned_cols=180 Identities=27% Similarity=0.391 Sum_probs=137.8
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCccEEEECCEecccccHHH
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE-----LSSGQIKIDDFDIASVELET 509 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~-----p~~G~I~IdG~dI~~l~~~~ 509 (677)
..|+++||+++|++. ++|+|+||++++||++||+||||||||||+++|+|+++ |++|+|.+||.++.+..
T Consensus 44 ~~l~i~nl~~~~~~~--~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~--- 118 (305)
T PRK14264 44 AKLSVEDLDVYYGDD--HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDG--- 118 (305)
T ss_pred ceEEEEEEEEEeCCe--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc---
Confidence 468999999999753 69999999999999999999999999999999999986 68999999999875430
Q ss_pred hhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhc
Q psy845 510 LRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYN 589 (677)
Q Consensus 510 ~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrEN 589 (677)
.+...+|+.++|++|++.+|++|++||
T Consensus 119 -----------------------------------------------------~~~~~~~~~i~~v~q~~~l~~~tv~en 145 (305)
T PRK14264 119 -----------------------------------------------------VNLVELRKRVGMVFQSPNPFPKSIREN 145 (305)
T ss_pred -----------------------------------------------------ccHHHHhhceEEEccCCccccccHHHH
Confidence 034567888999999999998999999
Q ss_pred cccCCC--------------------CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccch
Q psy845 590 LDPFGR--------------------CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTK 649 (677)
Q Consensus 590 I~~~~~--------------------~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~ 649 (677)
+.+... ..++++.++++.+++.+.+... .+. .+.+||||||||++|||||+++|+
T Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~--~~~~LSgGq~qrv~LAraL~~~p~ 220 (305)
T PRK14264 146 ISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDR---LDD--NALGLSGGQQQRLCIARCLAVDPE 220 (305)
T ss_pred HHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHH---hcC--ccccCCHHHHHHHHHHHHHhcCCC
Confidence 964210 0123456667777665433221 111 568999999999999999999999
Q ss_pred hhc-----------------------ccccce---ec---cc-ccccEE-EEEeCCeeC
Q psy845 650 KKK-----------------------KSGVNI---TR---PV-TSCDKV-LVMDNGQAL 677 (677)
Q Consensus 650 IL~-----------------------~~~~TI---Ls---TI-~~aDrI-lVLd~GrIV 677 (677)
++. .+++|| .| .+ ..|||| ++|++|+++
T Consensus 221 lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G~i~ 279 (305)
T PRK14264 221 VILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELV 279 (305)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCCEEE
Confidence 761 123452 22 22 349997 578999974
No 241
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2e-30 Score=283.84 Aligned_cols=175 Identities=27% Similarity=0.331 Sum_probs=134.6
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++++.-.|+. ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+..
T Consensus 29 ~~~~~~~~~~~~--~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~-------- 98 (400)
T PRK10070 29 LSKEQILEKTGL--SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDA-------- 98 (400)
T ss_pred ccHHHHHhhcCC--eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHH--------
Confidence 445555555532 2489999999999999999999999999999999999999999999999998776110
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHH-Hhhhcccccccccccc-cchhhccccCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET-LRSRLSVIPQDPVLFN-GTIRYNLDPFG 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-LR~~I~~V~Qd~~LFs-gTIrENI~~~~ 594 (677)
+... .|++++||+|++.+|. .|++||+.+..
T Consensus 99 -----------------------------------------------~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~ 131 (400)
T PRK10070 99 -----------------------------------------------ELREVRRKKIAMVFQSFALMPHMTVLDNTAFGM 131 (400)
T ss_pred -----------------------------------------------HHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHH
Confidence 1122 2467999999999985 69999997431
Q ss_pred ---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 ---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
..+ ++++.++++..++.++..+. ..+||||||||++||||++++|+++
T Consensus 132 ~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~---------~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~ 202 (400)
T PRK10070 132 ELAGINAEERREKALDALRQVGLENYAHSY---------PDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTE 202 (400)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCChhhhcC---------cccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHH
Confidence 111 34567788888887665543 3589999999999999999999976
Q ss_pred --------cc-cccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 --------KK-SGVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~-~~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
.. .++|| .|.. +.||||++|++|+++
T Consensus 203 l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~ 244 (400)
T PRK10070 203 MQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVV 244 (400)
T ss_pred HHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 11 35673 3332 359999999999974
No 242
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=1.6e-30 Score=262.15 Aligned_cols=176 Identities=29% Similarity=0.434 Sum_probs=135.3
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++-.|... ++|+||||++++||+++++||||+||||+++.++|+.+|.+|+|.++|.|++..+
T Consensus 4 L~v~~l~~~YG~~--~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p---------- 71 (237)
T COG0410 4 LEVENLSAGYGKI--QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLP---------- 71 (237)
T ss_pred eeEEeEeecccce--eEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCC----------
Confidence 7899999999764 6999999999999999999999999999999999999999999999999999984
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFGR 595 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~~ 595 (677)
+.+-.|..|+||||.-.+| +.|++||+..+..
T Consensus 72 -----------------------------------------------~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~ 104 (237)
T COG0410 72 -----------------------------------------------PHERARLGIAYVPEGRRIFPRLTVEENLLLGAY 104 (237)
T ss_pred -----------------------------------------------HHHHHhCCeEeCcccccchhhCcHHHHHhhhhh
Confidence 4556688888888888888 6799999976432
Q ss_pred C-ChHHHHHHHHHccchhhHhhhhc---ccCCCCCCCCCChHHHHHHHHHHHHhccchhhc-------------------
Q psy845 596 C-HDTELWDALEKSHLKSKVVTMRS---KLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK------------------- 652 (677)
Q Consensus 596 ~-sdeeI~~Al~~a~l~efI~~LP~---GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~------------------- 652 (677)
. .+++-. ....++--+-+|. -.+. ++.+|||||+|-+||||||+.+|+++.
T Consensus 105 ~~~~~~~~----~~~~e~v~~lFP~Lker~~~--~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~ 178 (237)
T COG0410 105 ARRDKEAQ----ERDLEEVYELFPRLKERRNQ--RAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEA 178 (237)
T ss_pred cccccccc----cccHHHHHHHChhHHHHhcC--cccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHH
Confidence 1 110100 0011111222232 2222 689999999999999999999999761
Q ss_pred ------ccccce-e------cccccccEEEEEeCCeeC
Q psy845 653 ------KSGVNI-T------RPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 653 ------~~~~TI-L------sTI~~aDrIlVLd~GrIV 677 (677)
..+.|| + ...+-|||-+||++|+|+
T Consensus 179 i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv 216 (237)
T COG0410 179 IKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIV 216 (237)
T ss_pred HHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEE
Confidence 124454 1 234559999999999985
No 243
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.97 E-value=3.4e-30 Score=268.43 Aligned_cols=172 Identities=22% Similarity=0.320 Sum_probs=135.8
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCC--------ccEEEECCEecccccHH
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS--------SGQIKIDDFDIASVELE 508 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~--------~G~I~IdG~dI~~l~~~ 508 (677)
++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|+ +|+|.+||.++.+.
T Consensus 2 l~~~nl~~~~~~~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~--- 76 (272)
T PRK13547 2 LTADHLHVARRHR--AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAI--- 76 (272)
T ss_pred eEEEEEEEEECCE--eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccC---
Confidence 6899999999653 6999999999999999999999999999999999999998 99999999988766
Q ss_pred HhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccc-ccccchh
Q psy845 509 TLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV-LFNGTIR 587 (677)
Q Consensus 509 ~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~-LFsgTIr 587 (677)
+...+|+.++|+||++. +|+.|++
T Consensus 77 -------------------------------------------------------~~~~~~~~~~~v~q~~~~~~~~tv~ 101 (272)
T PRK13547 77 -------------------------------------------------------DAPRLARLRAVLPQAAQPAFAFSAR 101 (272)
T ss_pred -------------------------------------------------------CHHHHHhhcEEecccCCCCCCCcHH
Confidence 55667778899999975 5788999
Q ss_pred hccccCCC--------C---ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHh---------cc
Q psy845 588 YNLDPFGR--------C---HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALL---------RK 647 (677)
Q Consensus 588 ENI~~~~~--------~---sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALL---------r~ 647 (677)
||+.+... . .++.+.++++..++.+.. +. ...+||||||||++||||++ ++
T Consensus 102 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~--~~~~LSgG~~qrv~laral~~~~~~~~~~~~ 172 (272)
T PRK13547 102 EIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALV-------GR--DVTTLSGGELARVQFARVLAQLWPPHDAAQP 172 (272)
T ss_pred HHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhh-------cC--CcccCCHHHHHHHHHHHHHhccccccccCCC
Confidence 99964310 1 123356667777665432 11 46799999999999999999 48
Q ss_pred chhh------------------------ccc-ccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 648 TKKK------------------------KKS-GVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 648 p~IL------------------------~~~-~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
|+++ ..+ ++|+ .| .+ +.||+|++|++|+++
T Consensus 173 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~ 234 (272)
T PRK13547 173 PRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIV 234 (272)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEE
Confidence 8865 112 5663 22 23 359999999999974
No 244
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.97 E-value=3.7e-30 Score=265.22 Aligned_cols=178 Identities=21% Similarity=0.329 Sum_probs=136.7
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCC---ccEEEECCEecccccHHHhhh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS---SGQIKIDDFDIASVELETLRS 512 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~---~G~I~IdG~dI~~l~~~~~~~ 512 (677)
-++++||+++|++. ++++|+||++++||++||+||||||||||+++|+|+++|+ +|+|.+||.++...+.
T Consensus 4 ~l~~~nl~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~----- 76 (262)
T PRK09984 4 IIRVEKLAKTFNQH--QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGR----- 76 (262)
T ss_pred EEEEeeEEEEeCCe--EEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccc-----
Confidence 48999999999753 6999999999999999999999999999999999999986 4999999998754300
Q ss_pred hcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccc
Q psy845 513 RLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLD 591 (677)
Q Consensus 513 ~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~ 591 (677)
...+...+|++++|+||++.+|. .|++||+.
T Consensus 77 ------------------------------------------------~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 108 (262)
T PRK09984 77 ------------------------------------------------LARDIRKSRANTGYIFQQFNLVNRLSVLENVL 108 (262)
T ss_pred ------------------------------------------------cchhHHHHHhheEEEccccccccCCcHHHHHH
Confidence 00033567888999999998886 59999996
Q ss_pred cCCC---------------CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----
Q psy845 592 PFGR---------------CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----- 651 (677)
Q Consensus 592 ~~~~---------------~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----- 651 (677)
+... ..++++.++++..++.+...+ ...+||||||||++||||++.+|+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qrv~laral~~~p~llllDEP 179 (262)
T PRK09984 109 IGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ---------RVSTLSGGQQQRVAIARALMQQAKVILADEP 179 (262)
T ss_pred hhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhC---------CccccCHHHHHHHHHHHHHhcCCCEEEecCc
Confidence 4210 112345667777776544322 45689999999999999999999976
Q ss_pred -----------------c--c-cccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 -----------------K--K-SGVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----------------~--~-~~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
. . .++|+ .|.. +.||||++|++|+++
T Consensus 180 t~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~ 232 (262)
T PRK09984 180 IASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVF 232 (262)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 1 1 25663 3322 349999999999973
No 245
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2e-30 Score=263.36 Aligned_cols=169 Identities=30% Similarity=0.418 Sum_probs=135.7
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+++|++++|++ .+++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 l~~~~l~~~~~~---~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~----------- 66 (235)
T cd03299 1 LKVENLSKDWKE---FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNL----------- 66 (235)
T ss_pred CeeEeEEEEeCC---ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcC-----------
Confidence 468999999974 389999999999999999999999999999999999999999999999988664
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~- 594 (677)
+. .|+.+++++|++.+|. .|++||+.+..
T Consensus 67 -----------------------------------------------~~--~~~~i~~~~q~~~~~~~~t~~e~l~~~~~ 97 (235)
T cd03299 67 -----------------------------------------------PP--EKRDISYVPQNYALFPHMTVYKNIAYGLK 97 (235)
T ss_pred -----------------------------------------------Ch--hHcCEEEEeecCccCCCccHHHHHHHHHH
Confidence 22 2578999999998884 79999996421
Q ss_pred --CC----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 595 --RC----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 595 --~~----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
.. .++++.++++..++.++..+. ..+||||||||++||||++++|+++
T Consensus 98 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l 168 (235)
T cd03299 98 KRKVDKKEIERKVLEIAEMLGIDHLLNRK---------PETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKL 168 (235)
T ss_pred HcCCCHHHHHHHHHHHHHHcCChhHHhcC---------cccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHH
Confidence 11 234466778888877665443 4689999999999999999999876
Q ss_pred -----c--c-cccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 -----K--K-SGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----~--~-~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
. . .++|+ .| .+. -||+|++|++|+++
T Consensus 169 ~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~ 209 (235)
T cd03299 169 REELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLI 209 (235)
T ss_pred HHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 0 1 25673 22 233 39999999999974
No 246
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.2e-30 Score=275.22 Aligned_cols=180 Identities=24% Similarity=0.382 Sum_probs=131.3
Q ss_pred EEEEeeeEEeCCCC--CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC----CCccEEEECCEecccccHHHh
Q psy845 437 IKFKNVSLRYRDNW--PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE----LSSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 437 I~fknVsFsY~~~~--~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~----p~~G~I~IdG~dI~~l~~~~~ 510 (677)
++++|++++|+++. ..+|+||||+|++||++||||+||||||||+++|+|+++ |++|+|.+||.|+.+++.++
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~- 82 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE- 82 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH-
Confidence 78999999997542 359999999999999999999999999999999999998 48999999999987773221
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHh-hhccccccccc--cc-ccch
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR-SRLSVIPQDPV--LF-NGTI 586 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR-~~I~~V~Qd~~--LF-sgTI 586 (677)
...+| ++++||+|++. +. ..|+
T Consensus 83 ------------------------------------------------------~~~~r~~~i~~v~Q~~~~~l~p~~~v 108 (326)
T PRK11022 83 ------------------------------------------------------RRNLVGAEVAMIFQDPMTSLNPCYTV 108 (326)
T ss_pred ------------------------------------------------------HHHHhCCCEEEEecCchhhcCCcCCH
Confidence 11222 35777777764 22 2345
Q ss_pred hhc----cccCCCC----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------
Q psy845 587 RYN----LDPFGRC----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------- 651 (677)
Q Consensus 587 rEN----I~~~~~~----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------- 651 (677)
.+| +...... ..+++.++++.+++.+.... ++. ...+||||||||++||||++.+|+++
T Consensus 109 ~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~----l~~--~p~~LSgGq~QRv~iArAL~~~P~llilDEPts 182 (326)
T PRK11022 109 GFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASR----LDV--YPHQLSGGMSQRVMIAMAIACRPKLLIADEPTT 182 (326)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHH----HhC--CchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 444 3322111 23457778888888653211 111 46799999999999999999999976
Q ss_pred -----------------c-ccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 -----------------K-KSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----------------~-~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
. ..+.|+ .| .+ +-||||+||++|+|+
T Consensus 183 ~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~iv 233 (326)
T PRK11022 183 ALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVV 233 (326)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 1 125562 33 33 359999999999985
No 247
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.97 E-value=3e-30 Score=259.40 Aligned_cols=168 Identities=26% Similarity=0.386 Sum_probs=134.5
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++||+++|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++...
T Consensus 1 l~l~~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~----------- 67 (223)
T TIGR03740 1 LETKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK----------- 67 (223)
T ss_pred CEEEeEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc-----------
Confidence 468999999975 3699999999999999999999999999999999999999999999999876432
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~- 594 (677)
. ++.++|+||++.+|. .|++||+.+..
T Consensus 68 -----------------------------------------------~----~~~~~~~~q~~~~~~~~t~~~~~~~~~~ 96 (223)
T TIGR03740 68 -----------------------------------------------D----LHKIGSLIESPPLYENLTARENLKVHTT 96 (223)
T ss_pred -----------------------------------------------c----cccEEEEcCCCCccccCCHHHHHHHHHH
Confidence 1 246888888888775 69999996421
Q ss_pred --CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------------
Q psy845 595 --RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------------- 651 (677)
Q Consensus 595 --~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------------- 651 (677)
..+++++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 97 ~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L 167 (223)
T TIGR03740 97 LLGLPDSRIDEVLNIVDLTNTGKK---------KAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELI 167 (223)
T ss_pred HcCCCHHHHHHHHHHcCCcHHHhh---------hHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHH
Confidence 2345677788888888765433 35689999999999999999999976
Q ss_pred ---cccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 ---KKSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---~~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+ +.||||++|++|+++
T Consensus 168 ~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~ 203 (223)
T TIGR03740 168 RSFPEQGITVILSSHILSEVQQLADHIGIISEGVLG 203 (223)
T ss_pred HHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEE
Confidence 1235563 22 23 359999999999974
No 248
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.1e-30 Score=271.78 Aligned_cols=174 Identities=27% Similarity=0.356 Sum_probs=135.1
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.|+++|++..|+.. .+++|||++|+.||.+|+.|||||||||++++|+|+..|++|.|.+||..+.+.+
T Consensus 2 ~i~i~~~~~~~~~~--~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~--------- 70 (345)
T COG1118 2 SIRINNVKKRFGAF--GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVS--------- 70 (345)
T ss_pred ceeehhhhhhcccc--cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchh---------
Confidence 47788999999764 5899999999999999999999999999999999999999999999999443331
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~ 594 (677)
....-.++||+|+|+.-|| +.|+++||+++-
T Consensus 71 ------------------------------------------------~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl 102 (345)
T COG1118 71 ------------------------------------------------NLAVRDRKVGFVFQHYALFPHMTVADNIAFGL 102 (345)
T ss_pred ------------------------------------------------ccchhhcceeEEEechhhcccchHHhhhhhcc
Confidence 1122235777777887777 789999998763
Q ss_pred C-----C----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc-------------
Q psy845 595 R-----C----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK------------- 652 (677)
Q Consensus 595 ~-----~----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~------------- 652 (677)
+ . .+.++.+.++.+++...-++ ...+||||||||+|+|||+...|++|.
T Consensus 103 ~~~~~~p~~~~~r~rv~elL~lvqL~~la~r---------yP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr 173 (345)
T COG1118 103 KVRKERPSEAEIRARVEELLRLVQLEGLADR---------YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVR 173 (345)
T ss_pred cccccCCChhhHHHHHHHHHHHhcccchhhc---------CchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHH
Confidence 1 2 23345566777777655444 357999999999999999999999871
Q ss_pred ------------ccccc-e--ec----ccccccEEEEEeCCeeC
Q psy845 653 ------------KSGVN-I--TR----PVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 653 ------------~~~~T-I--Ls----TI~~aDrIlVLd~GrIV 677 (677)
..+.| + .| +.+-||||+||+||+|.
T Consensus 174 ~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ie 217 (345)
T COG1118 174 KELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIE 217 (345)
T ss_pred HHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeee
Confidence 12333 2 33 34569999999999973
No 249
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.3e-30 Score=265.61 Aligned_cols=167 Identities=20% Similarity=0.277 Sum_probs=130.5
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|++ .++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 2 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----------- 68 (255)
T PRK11248 2 LQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP----------- 68 (255)
T ss_pred EEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----------
Confidence 689999999975 3699999999999999999999999999999999999999999999999987543
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~- 594 (677)
++.++|++|++.+|. .|++||+.+..
T Consensus 69 ----------------------------------------------------~~~~~~v~q~~~~~~~~tv~e~l~~~~~ 96 (255)
T PRK11248 69 ----------------------------------------------------GAERGVVFQNEGLLPWRNVQDNVAFGLQ 96 (255)
T ss_pred ----------------------------------------------------CCcEEEEeCCCccCCCCcHHHHHHhHHH
Confidence 124688888888875 69999986421
Q ss_pred --CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 595 --RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 595 --~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
..+ ++++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 97 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l 167 (255)
T PRK11248 97 LAGVEKMQRLEIAHQMLKKVGLEGAEKR---------YIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQM 167 (255)
T ss_pred HcCCCHHHHHHHHHHHHHHcCChhHhhC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH
Confidence 112 2345666777766544322 45789999999999999999999876
Q ss_pred -----c--c-cccce---ecc---c-ccccEEEEEe--CCeeC
Q psy845 652 -----K--K-SGVNI---TRP---V-TSCDKVLVMD--NGQAL 677 (677)
Q Consensus 652 -----~--~-~~~TI---LsT---I-~~aDrIlVLd--~GrIV 677 (677)
. . .++|| .|. + ..||+|++|+ +|+++
T Consensus 168 ~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~ 210 (255)
T PRK11248 168 QTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVV 210 (255)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEE
Confidence 1 1 25663 232 2 3499999999 58874
No 250
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.9e-30 Score=266.93 Aligned_cols=180 Identities=27% Similarity=0.380 Sum_probs=140.6
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CccEEEECCEecccccHHH
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIASVELET 509 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-----~~G~I~IdG~dI~~l~~~~ 509 (677)
.-|+++|++++|++. ++|+|+||++++||++||+||||||||||+++|+|+++| ++|+|.+||+++.+.+
T Consensus 19 ~~l~~~nl~~~~~~~--~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~--- 93 (274)
T PRK14265 19 SVFEVEGVKVFYGGF--LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ--- 93 (274)
T ss_pred ceEEEeeEEEEeCCe--EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccccc---
Confidence 369999999999753 699999999999999999999999999999999999864 6999999999875420
Q ss_pred hhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhc
Q psy845 510 LRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYN 589 (677)
Q Consensus 510 ~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrEN 589 (677)
.+...+|++++|++|++.+|+.|++||
T Consensus 94 -----------------------------------------------------~~~~~~~~~i~~v~q~~~l~~~tv~~n 120 (274)
T PRK14265 94 -----------------------------------------------------INSVKLRRQVGMVFQRPNPFPKSIYEN 120 (274)
T ss_pred -----------------------------------------------------chhHHHhhcEEEEccCCccccccHHHH
Confidence 034467889999999999998899999
Q ss_pred cccCCC------CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------
Q psy845 590 LDPFGR------CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------ 651 (677)
Q Consensus 590 I~~~~~------~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------ 651 (677)
+..... ..++++.++++.+++.+++... .+. ...+||||||||++||||++++|+++
T Consensus 121 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~~--~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~ 195 (274)
T PRK14265 121 IAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDK---LKE--KGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPI 195 (274)
T ss_pred HHhHHHhcCchHHHHHHHHHHHHHcccchhhHHH---hcC--CcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHH
Confidence 975321 1234466678888876554321 222 46799999999999999999999976
Q ss_pred -----------cccccce---ec---cc-ccccEEEEEe---------CCeeC
Q psy845 652 -----------KKSGVNI---TR---PV-TSCDKVLVMD---------NGQAL 677 (677)
Q Consensus 652 -----------~~~~~TI---Ls---TI-~~aDrIlVLd---------~GrIV 677 (677)
..+++|| .| .+ +.||||++|+ +|+++
T Consensus 196 ~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~ 248 (274)
T PRK14265 196 STRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLV 248 (274)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 1234553 22 23 3599999998 78874
No 251
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.97 E-value=3.2e-30 Score=267.00 Aligned_cols=175 Identities=29% Similarity=0.413 Sum_probs=130.9
Q ss_pred cEEEEeeeEEeCCC-------CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHH
Q psy845 436 TIKFKNVSLRYRDN-------WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELE 508 (677)
Q Consensus 436 ~I~fknVsFsY~~~-------~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~ 508 (677)
-++++||+++|++. ..++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~--- 80 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFG--- 80 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCC---
Confidence 38999999999631 23699999999999999999999999999999999999999999999999988654
Q ss_pred HhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccc--ccc-cc
Q psy845 509 TLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV--LFN-GT 585 (677)
Q Consensus 509 ~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~--LFs-gT 585 (677)
+.+..|+.++|+||++. ++. .|
T Consensus 81 -------------------------------------------------------~~~~~~~~i~~v~q~~~~~~~~~~t 105 (267)
T PRK15112 81 -------------------------------------------------------DYSYRSQRIRMIFQDPSTSLNPRQR 105 (267)
T ss_pred -------------------------------------------------------chhhHhccEEEEecCchhhcCcchh
Confidence 22334456777777764 332 36
Q ss_pred hhhccccC--------CCCChHHHHHHHHHccch-hhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----
Q psy845 586 IRYNLDPF--------GRCHDTELWDALEKSHLK-SKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----- 651 (677)
Q Consensus 586 IrENI~~~--------~~~sdeeI~~Al~~a~l~-efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----- 651 (677)
+.+|+... ....++++.++++..++. +.. +. ...+||||||||++||||++++|+++
T Consensus 106 v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~--~~~~LS~G~~qrv~laral~~~p~lllLDEP 176 (267)
T PRK15112 106 ISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHA-------SY--YPHMLAPGQKQRLGLARALILRPKVIIADEA 176 (267)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHH-------hc--CchhcCHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 67766421 111234567788888874 222 11 34689999999999999999999976
Q ss_pred -----------------c--c-cccce---ec---cccc-ccEEEEEeCCeeC
Q psy845 652 -----------------K--K-SGVNI---TR---PVTS-CDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----------------~--~-~~~TI---Ls---TI~~-aDrIlVLd~GrIV 677 (677)
. . .++|| .| .+.. ||||++|++|+++
T Consensus 177 t~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~ 229 (267)
T PRK15112 177 LASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVV 229 (267)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 1 1 25663 22 3343 9999999999974
No 252
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=5.3e-30 Score=264.93 Aligned_cols=179 Identities=24% Similarity=0.296 Sum_probs=141.7
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CccEEEECCEecccccHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-----~~G~I~IdG~dI~~l~~~~~ 510 (677)
.+.+++.+++|++ .++++|+||++++||++||+||||||||||+++|+|+++| ++|+|.+||.++.+.+
T Consensus 8 ~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~---- 81 (261)
T PRK14263 8 VMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKG---- 81 (261)
T ss_pred eEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccc----
Confidence 4789999999965 3699999999999999999999999999999999999987 7999999999875430
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcc
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNL 590 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI 590 (677)
.+...+|+.++|++|++.+|+.|++||+
T Consensus 82 ----------------------------------------------------~~~~~~~~~i~~v~q~~~~~~~tv~enl 109 (261)
T PRK14263 82 ----------------------------------------------------VDPVVVRRYIGMVFQQPNPFSMSIFDNV 109 (261)
T ss_pred ----------------------------------------------------cchHhhhhceEEEecCCccccccHHHHH
Confidence 0334678889999999999999999999
Q ss_pred ccCCC------CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------
Q psy845 591 DPFGR------CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------- 651 (677)
Q Consensus 591 ~~~~~------~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------- 651 (677)
.++.. ..++++.++++.+++.+.+.... +. ...+||||||||++||||++++|+++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~---~~--~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~ 184 (261)
T PRK14263 110 AFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKL---KV--SGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIA 184 (261)
T ss_pred HHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhh---hC--CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHH
Confidence 75321 12346778888888876654321 11 56799999999999999999999976
Q ss_pred ----------cccccce---ec---cc-ccccEEEEEe--------CCeeC
Q psy845 652 ----------KKSGVNI---TR---PV-TSCDKVLVMD--------NGQAL 677 (677)
Q Consensus 652 ----------~~~~~TI---Ls---TI-~~aDrIlVLd--------~GrIV 677 (677)
..+++|+ .| .+ +.||||++|+ +|+++
T Consensus 185 ~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~ 235 (261)
T PRK14263 185 TRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLV 235 (261)
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEE
Confidence 1234552 22 23 3499999996 89874
No 253
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.96 E-value=6.9e-30 Score=262.67 Aligned_cols=177 Identities=25% Similarity=0.384 Sum_probs=127.3
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEe-----cccccHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD-----IASVELETL 510 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~d-----I~~l~~~~~ 510 (677)
-++++|++++|++. ++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.+ +.+.+..
T Consensus 6 ~l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~-- 81 (258)
T PRK11701 6 LLSVRGLTKLYGPR--KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA-- 81 (258)
T ss_pred eEEEeeeEEEcCCc--eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHH--
Confidence 48999999999753 69999999999999999999999999999999999999999999999988 5544110
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHH-Hhhhccccccccc--cc-ccch
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET-LRSRLSVIPQDPV--LF-NGTI 586 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-LR~~I~~V~Qd~~--LF-sgTI 586 (677)
.... .|+.++|++|++. ++ +.|+
T Consensus 82 -----------------------------------------------------~~~~~~~~~i~~v~q~~~~~~~~~~~~ 108 (258)
T PRK11701 82 -----------------------------------------------------ERRRLLRTEWGFVHQHPRDGLRMQVSA 108 (258)
T ss_pred -----------------------------------------------------HHHHHhhcceEEEeeCcccccCccccH
Confidence 1112 3567888888873 33 3577
Q ss_pred hhcccc----CCCCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------
Q psy845 587 RYNLDP----FGRCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------- 651 (677)
Q Consensus 587 rENI~~----~~~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------- 651 (677)
.||+.. ..... ++++.++++..++.+ ...+. .+.+||||||||++||||++++|+++
T Consensus 109 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~--~~~~LS~Gq~qrl~laral~~~p~llllDEPt~ 180 (258)
T PRK11701 109 GGNIGERLMAVGARHYGDIRATAGDWLERVEIDA------ARIDD--LPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTG 180 (258)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCCh------hHHhC--CCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 788742 11111 122233333333321 00111 57899999999999999999999976
Q ss_pred -----------------ccc-ccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 -----------------KKS-GVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----------------~~~-~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
..+ +.|| .| .+. .||+|++|++|+++
T Consensus 181 ~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~ 231 (258)
T PRK11701 181 GLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVV 231 (258)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 112 5563 22 233 49999999999974
No 254
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=8e-30 Score=263.06 Aligned_cols=184 Identities=29% Similarity=0.366 Sum_probs=140.6
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
.-++++|++++|++. ++++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.-
T Consensus 9 ~~i~~~~~~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~------------- 73 (257)
T PRK14246 9 DVFNISRLYLYINDK--AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKV------------- 73 (257)
T ss_pred hheeeeeEEEecCCc--eeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEE-------------
Confidence 459999999999753 69999999999999999999999999999999999999999998887632
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-chhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TIrENI~~~ 593 (677)
.+||.+....+...+|+.++|++|++.+|.+ |++||+.+.
T Consensus 74 ---------------------------------------~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~ 114 (257)
T PRK14246 74 ---------------------------------------LYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYP 114 (257)
T ss_pred ---------------------------------------EECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHH
Confidence 2333333333566789999999999999975 999999742
Q ss_pred C---CC-ChH----HHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------------
Q psy845 594 G---RC-HDT----ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------------- 651 (677)
Q Consensus 594 ~---~~-sde----eI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------------- 651 (677)
. .. .++ ++.++++..++++++... .+. .+..||||||||++||||++++|+++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~--~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~ 189 (257)
T PRK14246 115 LKSHGIKEKREIKKIVEECLRKVGLWKEVYDR---LNS--PASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNS 189 (257)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCCccchhh---hcC--CcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHH
Confidence 1 11 222 245667777776544211 122 56789999999999999999999976
Q ss_pred ---------cccccce---e---ccc-ccccEEEEEeCCeeC
Q psy845 652 ---------KKSGVNI---T---RPV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~~~~TI---L---sTI-~~aDrIlVLd~GrIV 677 (677)
..+++|| . +.+ ..||++++|++|+++
T Consensus 190 ~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~ 231 (257)
T PRK14246 190 QAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELV 231 (257)
T ss_pred HHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 1134553 2 233 459999999999974
No 255
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.96 E-value=6.8e-30 Score=273.26 Aligned_cols=181 Identities=28% Similarity=0.386 Sum_probs=131.9
Q ss_pred ccEEEEeeeEEeCCC--CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCC---ccEEEECCEecccccHHH
Q psy845 435 GTIKFKNVSLRYRDN--WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS---SGQIKIDDFDIASVELET 509 (677)
Q Consensus 435 g~I~fknVsFsY~~~--~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~---~G~I~IdG~dI~~l~~~~ 509 (677)
.-++++|++++|+.+ ...+++|+||+|++||++||||+||||||||+++|+|+++|+ +|+|.+||.|+.+++..
T Consensus 11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~- 89 (330)
T PRK09473 11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK- 89 (330)
T ss_pred ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH-
Confidence 358999999999642 246999999999999999999999999999999999999996 99999999999877221
Q ss_pred hhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHh-hhcccccccc--ccc-ccc
Q psy845 510 LRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR-SRLSVIPQDP--VLF-NGT 585 (677)
Q Consensus 510 ~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR-~~I~~V~Qd~--~LF-sgT 585 (677)
+...+| ++|+||+||+ .++ ..|
T Consensus 90 ------------------------------------------------------~~~~~r~~~i~~v~Q~~~~~l~p~~~ 115 (330)
T PRK09473 90 ------------------------------------------------------ELNKLRAEQISMIFQDPMTSLNPYMR 115 (330)
T ss_pred ------------------------------------------------------HHHHHhcCCEEEEEcCchhhcCCCCC
Confidence 222233 4688888887 344 356
Q ss_pred hhhccc----cCCCCChH----HHHHHHHHccchhhHhhhhcccCCC-CCCCCCChHHHHHHHHHHHHhccchhh-----
Q psy845 586 IRYNLD----PFGRCHDT----ELWDALEKSHLKSKVVTMRSKLDSD-VQGDQLSLGEKQLLCLARALLRKTKKK----- 651 (677)
Q Consensus 586 IrENI~----~~~~~sde----eI~~Al~~a~l~efI~~LP~GldT~-v~G~~LSGGQRQRIaIARALLr~p~IL----- 651 (677)
+.+|+. ..+..+.+ ++.++++.+++. ++.+.. -...+||||||||++||||++.+|+++
T Consensus 116 v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~-------~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEP 188 (330)
T PRK09473 116 VGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMP-------EARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEP 188 (330)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-------ChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 777663 22222322 344556665553 222221 157899999999999999999999976
Q ss_pred -------------------cc-cccce---e---cccc-cccEEEEEeCCeeC
Q psy845 652 -------------------KK-SGVNI---T---RPVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------------------~~-~~~TI---L---sTI~-~aDrIlVLd~GrIV 677 (677)
.. .+.|+ . +.+. -||||+||++|+|+
T Consensus 189 ts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~iv 241 (330)
T PRK09473 189 TTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTM 241 (330)
T ss_pred CccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 11 25562 2 3343 49999999999985
No 256
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=9.3e-30 Score=274.25 Aligned_cols=173 Identities=24% Similarity=0.316 Sum_probs=136.7
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
+++ |++++|++. .+ |+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+...
T Consensus 2 l~~-~l~k~~~~~---~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~--------- 67 (352)
T PRK11144 2 LEL-NFKQQLGDL---CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEK--------- 67 (352)
T ss_pred eEE-EEEEEeCCE---EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccc---------
Confidence 566 999999642 23 9999999999999999999999999999999999999999999998755300
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~- 594 (677)
..+....|++++||+|++.+|. .|++||+.++.
T Consensus 68 ---------------------------------------------~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~ 102 (352)
T PRK11144 68 ---------------------------------------------GICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA 102 (352)
T ss_pred ---------------------------------------------ccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh
Confidence 0023345788999999999995 69999997642
Q ss_pred CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------------
Q psy845 595 RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------------- 651 (677)
Q Consensus 595 ~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------------- 651 (677)
...++++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 103 ~~~~~~~~~~l~~~gl~~~~~~---------~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~ 173 (352)
T PRK11144 103 KSMVAQFDKIVALLGIEPLLDR---------YPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLER 173 (352)
T ss_pred hhhHHHHHHHHHHcCCchhhhC---------CcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 3345678888888888765544 34689999999999999999999976
Q ss_pred -ccc-ccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 -KKS-GVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -~~~-~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
..+ ++|+ .|.. .-||||++|++|+++
T Consensus 174 l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~ 208 (352)
T PRK11144 174 LAREINIPILYVSHSLDEILRLADRVVVLEQGKVK 208 (352)
T ss_pred HHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEE
Confidence 112 5562 3322 349999999999974
No 257
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.96 E-value=7.3e-30 Score=252.66 Aligned_cols=150 Identities=29% Similarity=0.387 Sum_probs=122.8
Q ss_pred cEEEEeeeEEeCCC----CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCC--CCCccEEEECCEecccccHHH
Q psy845 436 TIKFKNVSLRYRDN----WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV--ELSSGQIKIDDFDIASVELET 509 (677)
Q Consensus 436 ~I~fknVsFsY~~~----~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y--~p~~G~I~IdG~dI~~l~~~~ 509 (677)
.++++||+++|++. ..++++|+||++++||+++|+||||||||||+++|+|++ +|++|+|.+||+++..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~----- 77 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK----- 77 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch-----
Confidence 58999999999752 246999999999999999999999999999999999999 9999999999987632
Q ss_pred hhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhh
Q psy845 510 LRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRY 588 (677)
Q Consensus 510 ~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrE 588 (677)
..+|++++|++|++.+|. .|++|
T Consensus 78 --------------------------------------------------------~~~~~~i~~~~q~~~~~~~~t~~~ 101 (194)
T cd03213 78 --------------------------------------------------------RSFRKIIGYVPQDDILHPTLTVRE 101 (194)
T ss_pred --------------------------------------------------------HhhhheEEEccCcccCCCCCcHHH
Confidence 145678888999988886 59999
Q ss_pred ccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 589 NLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 589 NI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
|+.+.. + . .+||||||||++||||++++|+++
T Consensus 102 ~i~~~~-----------~-~-------------------~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l 150 (194)
T cd03213 102 TLMFAA-----------K-L-------------------RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQV 150 (194)
T ss_pred HHHHHH-----------H-h-------------------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHH
Confidence 985310 0 0 089999999999999999999976
Q ss_pred -------cccccce---eccc-----ccccEEEEEeCCeeC
Q psy845 652 -------KKSGVNI---TRPV-----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------~~~~~TI---LsTI-----~~aDrIlVLd~GrIV 677 (677)
..+++|+ .|.. +.||||++|++|+++
T Consensus 151 ~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~ 191 (194)
T cd03213 151 MSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVI 191 (194)
T ss_pred HHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEE
Confidence 1235672 3333 239999999999974
No 258
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.96 E-value=6.4e-30 Score=250.18 Aligned_cols=144 Identities=28% Similarity=0.498 Sum_probs=120.0
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-++++|++++| +++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--------- 68 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRS--------- 68 (182)
T ss_pred EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccC---------
Confidence 38999999998 899999999999999999999999999999999999999999999999887651
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc----cccccchhhccc
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP----VLFNGTIRYNLD 591 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~----~LFsgTIrENI~ 591 (677)
+.+..|++++|++|++ ..++.|++||+.
T Consensus 69 ------------------------------------------------~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~ 100 (182)
T cd03215 69 ------------------------------------------------PRDAIRAGIAYVPEDRKREGLVLDLSVAENIA 100 (182)
T ss_pred ------------------------------------------------HHHHHhCCeEEecCCcccCcccCCCcHHHHHH
Confidence 2345677899999985 344689999996
Q ss_pred cCCCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------------------
Q psy845 592 PFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------------------- 651 (677)
Q Consensus 592 ~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------------------- 651 (677)
+... ||||||||++||||++++|+++
T Consensus 101 ~~~~----------------------------------LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~ 146 (182)
T cd03215 101 LSSL----------------------------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRL 146 (182)
T ss_pred HHhh----------------------------------cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHH
Confidence 4210 9999999999999999999976
Q ss_pred ----cccccce---ec---cccc-ccEEEEEeCCee
Q psy845 652 ----KKSGVNI---TR---PVTS-CDKVLVMDNGQA 676 (677)
Q Consensus 652 ----~~~~~TI---Ls---TI~~-aDrIlVLd~GrI 676 (677)
..+++|+ .| .+.+ ||+|++|++|++
T Consensus 147 l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 147 IRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 1235663 22 2333 999999999985
No 259
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.2e-29 Score=253.57 Aligned_cols=169 Identities=27% Similarity=0.354 Sum_probs=129.2
Q ss_pred eeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCC
Q psy845 441 NVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQD 520 (677)
Q Consensus 441 nVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~ 520 (677)
||+++|++. .+ |+||++++ |++||+||||||||||+++|+|+++|++|+|.+||.++.+...
T Consensus 5 ~l~~~~~~~--~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~------------- 66 (214)
T cd03297 5 DIEKRLPDF--TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRK------------- 66 (214)
T ss_pred eeeEecCCe--ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccc-------------
Confidence 899999764 34 99999999 9999999999999999999999999999999999998754300
Q ss_pred ccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCCC-C--
Q psy845 521 PVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFGR-C-- 596 (677)
Q Consensus 521 ~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~~-~-- 596 (677)
..+....|++++|++|++.+|. .|++||+.+... .
T Consensus 67 -----------------------------------------~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~ 105 (214)
T cd03297 67 -----------------------------------------KINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRN 105 (214)
T ss_pred -----------------------------------------hhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhCCH
Confidence 0023356788999999999985 699999974321 1
Q ss_pred --ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------------
Q psy845 597 --HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------------- 651 (677)
Q Consensus 597 --sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------------- 651 (677)
.++++.++++..++.+.... ...+||||||||++||||++++|+++
T Consensus 106 ~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 176 (214)
T cd03297 106 REDRISVDELLDLLGLDHLLNR---------YPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQ 176 (214)
T ss_pred HHHHHHHHHHHHHcCCHhHhhc---------CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 12345556666655433221 56799999999999999999999976
Q ss_pred -ccc-ccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 -KKS-GVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -~~~-~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+ ++|| .| .+ +.||++++|++|+++
T Consensus 177 ~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 211 (214)
T cd03297 177 IKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQ 211 (214)
T ss_pred HHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEE
Confidence 112 5663 22 23 359999999999974
No 260
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.4e-29 Score=270.65 Aligned_cols=180 Identities=23% Similarity=0.378 Sum_probs=131.5
Q ss_pred EEEEeeeEEeCC--CCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC----CCccEEEECCEecccccHHHh
Q psy845 437 IKFKNVSLRYRD--NWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE----LSSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 437 I~fknVsFsY~~--~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~----p~~G~I~IdG~dI~~l~~~~~ 510 (677)
++++|++++|+. +...+++|+||+|++||++||||+||||||||+++|+|+.+ |++|+|.+||+++.+.+..+
T Consensus 4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~- 82 (330)
T PRK15093 4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE- 82 (330)
T ss_pred EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH-
Confidence 789999999963 22469999999999999999999999999999999999986 58999999999987762221
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHH-hhhcccccccccc--c-ccch
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL-RSRLSVIPQDPVL--F-NGTI 586 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~L-R~~I~~V~Qd~~L--F-sgTI 586 (677)
...+ |+.++||+|++.. . ..|+
T Consensus 83 ------------------------------------------------------~~~~~~~~i~~v~Q~~~~~l~p~~tv 108 (330)
T PRK15093 83 ------------------------------------------------------RRKLVGHNVSMIFQEPQSCLDPSERV 108 (330)
T ss_pred ------------------------------------------------------HHHHhCCCEEEEecCcchhcCccccH
Confidence 1122 2357777777652 2 3567
Q ss_pred hhccccC-------CC------CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--
Q psy845 587 RYNLDPF-------GR------CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-- 651 (677)
Q Consensus 587 rENI~~~-------~~------~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-- 651 (677)
.+|+... +. ..++++.++++..++.+.-.. ++. ...+||||||||++|||||+.+|+++
T Consensus 109 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~----~~~--~p~~LSgG~~QRv~iArAL~~~P~llil 182 (330)
T PRK15093 109 GRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDA----MRS--FPYELTEGECQKVMIAIALANQPRLLIA 182 (330)
T ss_pred HHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHH----HhC--CchhCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 7776310 00 012456778888888643111 111 45799999999999999999999976
Q ss_pred ----------------------cc-cccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 ----------------------KK-SGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----------------------~~-~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
.. .+.|| .| .+ +-||||+||++|+|+
T Consensus 183 DEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~iv 238 (330)
T PRK15093 183 DEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTV 238 (330)
T ss_pred eCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 11 25563 33 33 349999999999985
No 261
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.96 E-value=2.6e-29 Score=249.56 Aligned_cols=145 Identities=21% Similarity=0.280 Sum_probs=122.3
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...
T Consensus 1 l~i~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~----------- 67 (201)
T cd03231 1 LEADELTCERDGR--ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQ----------- 67 (201)
T ss_pred CEEEEEEEEeCCc--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-----------
Confidence 4689999999753 599999999999999999999999999999999999999999999999886443
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~- 594 (677)
+ ..+|++++|++|++.++ +.|++||+.+..
T Consensus 68 -----------------------------------------------~-~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 99 (201)
T cd03231 68 -----------------------------------------------R-DSIARGLLYLGHAPGIKTTLSVLENLRFWHA 99 (201)
T ss_pred -----------------------------------------------c-HHhhhheEEeccccccCCCcCHHHHHHhhcc
Confidence 2 35678899999998876 689999997543
Q ss_pred CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 595 RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 595 ~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
...++++.++++..++.++.. + ...+||||||||++||||++++|+++
T Consensus 100 ~~~~~~~~~~l~~~~l~~~~~-------~--~~~~LS~G~~qrl~laral~~~p~ll 147 (201)
T cd03231 100 DHSDEQVEEALARVGLNGFED-------R--PVAQLSAGQQRRVALARLLLSGRPLW 147 (201)
T ss_pred cccHHHHHHHHHHcCChhhhc-------C--chhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 235667888888888865432 2 35689999999999999999999976
No 262
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.96 E-value=2.4e-29 Score=256.20 Aligned_cols=87 Identities=23% Similarity=0.375 Sum_probs=71.9
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcC--CCCCccEEEECCEecccccHHHhh-hh
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRL--VELSSGQIKIDDFDIASVELETLR-SR 513 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~--y~p~~G~I~IdG~dI~~l~~~~~~-~~ 513 (677)
++++|++++|++. ++++|+||+|++||++||+||||||||||+++|+|+ ++|++|+|.+||.++.+.+..+.+ +.
T Consensus 2 i~~~nl~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVEDK--AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeCCe--eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 6899999999753 599999999999999999999999999999999999 479999999999998776443332 34
Q ss_pred cccccCCccccc
Q psy845 514 LSVIPQDPVLFN 525 (677)
Q Consensus 514 i~~v~q~~~lf~ 525 (677)
+++++|++.+++
T Consensus 80 i~~~~q~~~~~~ 91 (248)
T PRK09580 80 IFMAFQYPVEIP 91 (248)
T ss_pred eEEEecCchhcc
Confidence 566666555443
No 263
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=2.4e-29 Score=250.06 Aligned_cols=145 Identities=27% Similarity=0.366 Sum_probs=121.8
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|++. ++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++...
T Consensus 2 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~----------- 68 (204)
T PRK13538 2 LEARNLACERDER--ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQ----------- 68 (204)
T ss_pred eEEEEEEEEECCE--EEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccc-----------
Confidence 6889999999753 599999999999999999999999999999999999999999999999987654
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFGR 595 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~~ 595 (677)
+ ...|+++++++|++.++. .|++||+.+...
T Consensus 69 -----------------------------------------------~-~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~ 100 (204)
T PRK13538 69 -----------------------------------------------R-DEYHQDLLYLGHQPGIKTELTALENLRFYQR 100 (204)
T ss_pred -----------------------------------------------h-HHhhhheEEeCCccccCcCCcHHHHHHHHHH
Confidence 2 245678889999888775 699999964321
Q ss_pred ----CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 596 ----CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 596 ----~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
..++++.++++..++.++..+ ...+||||||||++||||++++|+++
T Consensus 101 ~~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~LS~G~~qrl~la~al~~~p~ll 151 (204)
T PRK13538 101 LHGPGDDEALWEALAQVGLAGFEDV---------PVRQLSAGQQRRVALARLWLTRAPLW 151 (204)
T ss_pred hcCccHHHHHHHHHHHcCCHHHhhC---------ChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 334567788888888755422 35689999999999999999999976
No 264
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.96 E-value=1.6e-29 Score=272.62 Aligned_cols=170 Identities=25% Similarity=0.336 Sum_probs=130.6
Q ss_pred eeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCC
Q psy845 441 NVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQD 520 (677)
Q Consensus 441 nVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~ 520 (677)
|++++|++. .+ |+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+.
T Consensus 4 ~l~~~~~~~---~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~------------- 66 (354)
T TIGR02142 4 RFSKRLGDF---SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRK------------- 66 (354)
T ss_pred EEEEEECCE---EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCcc-------------
Confidence 899999643 34 9999999999999999999999999999999999999999999998754300
Q ss_pred ccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC-CCC-
Q psy845 521 PVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG-RCH- 597 (677)
Q Consensus 521 ~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~-~~s- 597 (677)
.......|++++||+|++.+|. .|++||+.++. ...
T Consensus 67 -----------------------------------------~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~ 105 (354)
T TIGR02142 67 -----------------------------------------GIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARP 105 (354)
T ss_pred -----------------------------------------ccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhccCh
Confidence 0012346788999999999996 59999997532 111
Q ss_pred ---hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------------
Q psy845 598 ---DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------------- 651 (677)
Q Consensus 598 ---deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------------- 651 (677)
++++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 106 ~~~~~~~~~~l~~~gL~~~~~~---------~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~ 176 (354)
T TIGR02142 106 SERRISFERVIELLGIGHLLGR---------LPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLER 176 (354)
T ss_pred hHHHHHHHHHHHHcCChhHhcC---------ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHH
Confidence 2235667777766554433 45789999999999999999999876
Q ss_pred -ccc-ccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 -KKS-GVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -~~~-~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+ ++|+ .|. + .-||+|++|++|+++
T Consensus 177 l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~ 211 (354)
T TIGR02142 177 LHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVA 211 (354)
T ss_pred HHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEE
Confidence 112 5662 332 3 249999999999974
No 265
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.96 E-value=2.9e-29 Score=257.65 Aligned_cols=173 Identities=25% Similarity=0.334 Sum_probs=128.8
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC----CccEEEECCEecccccHHHhh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL----SSGQIKIDDFDIASVELETLR 511 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p----~~G~I~IdG~dI~~l~~~~~~ 511 (677)
.++++|++++| + .++|+|+||++++||++||+||||||||||+++|+|+++| ++|+|.+||.+++..
T Consensus 4 ~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~------ 74 (254)
T PRK10418 4 QIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC------ 74 (254)
T ss_pred EEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc------
Confidence 58999999999 3 3699999999999999999999999999999999999999 999999999987432
Q ss_pred hhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccc-ccc--cchhh
Q psy845 512 SRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV-LFN--GTIRY 588 (677)
Q Consensus 512 ~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~-LFs--gTIrE 588 (677)
+ ..++.++||+|++. .|. .|+.+
T Consensus 75 ----------------------------------------------------~--~~~~~i~~v~q~~~~~~~~~~~~~~ 100 (254)
T PRK10418 75 ----------------------------------------------------A--LRGRKIATIMQNPRSAFNPLHTMHT 100 (254)
T ss_pred ----------------------------------------------------c--cccceEEEEecCCccccCccccHHH
Confidence 1 11345666666653 232 46666
Q ss_pred cccc-----CCCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------
Q psy845 589 NLDP-----FGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------ 651 (677)
Q Consensus 589 NI~~-----~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------ 651 (677)
|+.. +....++++.++++..++.++.. -++. ...+||||||||++||||++++|+++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----~~~~--~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~ 174 (254)
T PRK10418 101 HARETCLALGKPADDATLTAALEAVGLENAAR----VLKL--YPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVV 174 (254)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHcCCCChhh----hhhc--CCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHH
Confidence 6532 11233456788888888765310 0111 46799999999999999999999976
Q ss_pred ------------cc-cccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 ------------KK-SGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~-~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
.. .++|| .|. + ..|||+++|++|+++
T Consensus 175 ~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~ 220 (254)
T PRK10418 175 AQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIV 220 (254)
T ss_pred HHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 11 25563 222 3 349999999999974
No 266
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.96 E-value=2.5e-29 Score=245.59 Aligned_cols=145 Identities=34% Similarity=0.507 Sum_probs=121.3
Q ss_pred EEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccc
Q psy845 438 KFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVI 517 (677)
Q Consensus 438 ~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v 517 (677)
+++||+++|++ +++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~------------ 66 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASL------------ 66 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcC------------
Confidence 47899999975 3699999999999999999999999999999999999999999999999998776
Q ss_pred cCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCC
Q psy845 518 PQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCH 597 (677)
Q Consensus 518 ~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~s 597 (677)
+...+|+.++|++|
T Consensus 67 ----------------------------------------------~~~~~~~~i~~~~q-------------------- 80 (180)
T cd03214 67 ----------------------------------------------SPKELARKIAYVPQ-------------------- 80 (180)
T ss_pred ----------------------------------------------CHHHHHHHHhHHHH--------------------
Confidence 55567888999998
Q ss_pred hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------------cc
Q psy845 598 DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------------KK 653 (677)
Q Consensus 598 deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------------~~ 653 (677)
+++..++.++..+ .+.+||||||||++||||++++|+++ ..
T Consensus 81 ------~l~~~gl~~~~~~---------~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~ 145 (180)
T cd03214 81 ------ALELLGLAHLADR---------PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLAR 145 (180)
T ss_pred ------HHHHcCCHhHhcC---------CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH
Confidence 6677777665432 45789999999999999999999976 11
Q ss_pred c-ccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 654 S-GVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 654 ~-~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
+ ++|+ .| .+ +.||++++|++|+++
T Consensus 146 ~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~ 177 (180)
T cd03214 146 ERGKTVVMVLHDLNLAARYADRVILLKDGRIV 177 (180)
T ss_pred hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 2 5663 22 23 459999999999974
No 267
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.96 E-value=3.5e-29 Score=259.64 Aligned_cols=175 Identities=30% Similarity=0.447 Sum_probs=130.8
Q ss_pred EEEEeeeEEeCC-------CCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHH
Q psy845 437 IKFKNVSLRYRD-------NWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET 509 (677)
Q Consensus 437 I~fknVsFsY~~-------~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~ 509 (677)
|+++||+++|++ .++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+..
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~- 82 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA- 82 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh-
Confidence 789999999974 124699999999999999999999999999999999999999999999999988765110
Q ss_pred hhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccc--cc-ccch
Q psy845 510 LRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV--LF-NGTI 586 (677)
Q Consensus 510 ~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~--LF-sgTI 586 (677)
....+|+.++|++|++. ++ +.|+
T Consensus 83 ------------------------------------------------------~~~~~~~~i~~v~q~~~~~~~~~~t~ 108 (268)
T PRK10419 83 ------------------------------------------------------QRKAFRRDIQMVFQDSISAVNPRKTV 108 (268)
T ss_pred ------------------------------------------------------HHHHHHhcEEEEEcChhhccCCCCCH
Confidence 23456788888888873 33 4688
Q ss_pred hhccccC-C---CCCh----HHHHHHHHHccchhhHhhhhcccCCCC---CCCCCChHHHHHHHHHHHHhccchhh----
Q psy845 587 RYNLDPF-G---RCHD----TELWDALEKSHLKSKVVTMRSKLDSDV---QGDQLSLGEKQLLCLARALLRKTKKK---- 651 (677)
Q Consensus 587 rENI~~~-~---~~sd----eeI~~Al~~a~l~efI~~LP~GldT~v---~G~~LSGGQRQRIaIARALLr~p~IL---- 651 (677)
+||+... . ..+. +++.++++..+ +++.. .+.+||||||||++||||++++|+++
T Consensus 109 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDE 177 (268)
T PRK10419 109 REIIREPLRHLLSLDKAERLARASEMLRAVD-----------LDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDE 177 (268)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHcC-----------CChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9987421 0 1111 12333444433 33211 57799999999999999999999976
Q ss_pred --------------------ccc-ccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 --------------------KKS-GVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------------------~~~-~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
..+ +.|+ .| .+. -||+|++|++|+++
T Consensus 178 Pt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~ 231 (268)
T PRK10419 178 AVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIV 231 (268)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEe
Confidence 112 5562 22 233 49999999999974
No 268
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2e-29 Score=248.95 Aligned_cols=149 Identities=23% Similarity=0.309 Sum_probs=121.0
Q ss_pred cEEEEeeeEEeCCC--CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCC--CCCccEEEECCEecccccHHHhh
Q psy845 436 TIKFKNVSLRYRDN--WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV--ELSSGQIKIDDFDIASVELETLR 511 (677)
Q Consensus 436 ~I~fknVsFsY~~~--~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y--~p~~G~I~IdG~dI~~l~~~~~~ 511 (677)
.++++|++++|+++ .+++++|+||++++||+++|+||||||||||+++|+|++ +|++|+|.+||.++.
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~-------- 74 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD-------- 74 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH--------
Confidence 48899999999752 246999999999999999999999999999999999986 489999999998752
Q ss_pred hhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhcc
Q psy845 512 SRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNL 590 (677)
Q Consensus 512 ~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI 590 (677)
..+|++++|++|++.+|. .|++||+
T Consensus 75 ------------------------------------------------------~~~~~~i~~~~q~~~~~~~~tv~~~l 100 (192)
T cd03232 75 ------------------------------------------------------KNFQRSTGYVEQQDVHSPNLTVREAL 100 (192)
T ss_pred ------------------------------------------------------HHhhhceEEecccCccccCCcHHHHH
Confidence 245677888889888876 4999999
Q ss_pred ccCCCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------------
Q psy845 591 DPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------- 651 (677)
Q Consensus 591 ~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------- 651 (677)
.+.. .++ +||||||||++||||++++|+++
T Consensus 101 ~~~~---------~~~----------------------~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~ 149 (192)
T cd03232 101 RFSA---------LLR----------------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVR 149 (192)
T ss_pred HHHH---------HHh----------------------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHH
Confidence 6310 000 89999999999999999999976
Q ss_pred -----cccccce---ecc-----cccccEEEEEeC-CeeC
Q psy845 652 -----KKSGVNI---TRP-----VTSCDKVLVMDN-GQAL 677 (677)
Q Consensus 652 -----~~~~~TI---LsT-----I~~aDrIlVLd~-GrIV 677 (677)
...++|| .|. ...||||++|++ |+++
T Consensus 150 ~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~ 189 (192)
T cd03232 150 FLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTV 189 (192)
T ss_pred HHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEE
Confidence 1135662 332 345999999999 9975
No 269
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.96 E-value=3.5e-29 Score=256.24 Aligned_cols=178 Identities=24% Similarity=0.345 Sum_probs=126.3
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEe-----cccccHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD-----IASVELETL 510 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~d-----I~~l~~~~~ 510 (677)
-++++||+++|++. .+++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.+ +.+.+..+
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~- 79 (253)
T TIGR02323 3 LLQVSGLSKSYGGG--KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE- 79 (253)
T ss_pred eEEEeeeEEEeCCc--eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH-
Confidence 48999999999753 58999999999999999999999999999999999999999999999977 44431100
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc---cccchh
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL---FNGTIR 587 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L---FsgTIr 587 (677)
..+.+++.++|++|++.. +..|+.
T Consensus 80 -----------------------------------------------------~~~~~~~~i~~~~q~~~~~~~~~~~~~ 106 (253)
T TIGR02323 80 -----------------------------------------------------RRRLMRTEWGFVHQNPRDGLRMRVSAG 106 (253)
T ss_pred -----------------------------------------------------HHHhhhcceEEEEeCcccccCccccHH
Confidence 011234668888888742 245777
Q ss_pred hcccc----CC-C---CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------
Q psy845 588 YNLDP----FG-R---CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------- 651 (677)
Q Consensus 588 ENI~~----~~-~---~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------- 651 (677)
||+.. .. . ..++++.+.++..++.+ ...+. ...+||||||||++||||++++|+++
T Consensus 107 ~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~------~~~~~--~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~ 178 (253)
T TIGR02323 107 ANIGERLMAIGARHYGNIRAAAHDWLEEVEIDP------TRIDD--LPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGG 178 (253)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHcCCCh------hhhhc--CchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 77732 11 1 11223333444443321 00111 57899999999999999999999976
Q ss_pred ----------------cc-cccce---ecc---cc-cccEEEEEeCCeeC
Q psy845 652 ----------------KK-SGVNI---TRP---VT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----------------~~-~~~TI---LsT---I~-~aDrIlVLd~GrIV 677 (677)
.. .+.|+ .|. +. .||++++|++|+++
T Consensus 179 LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~ 228 (253)
T TIGR02323 179 LDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVV 228 (253)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 11 25562 232 33 49999999999974
No 270
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.96 E-value=3.8e-29 Score=255.54 Aligned_cols=175 Identities=23% Similarity=0.246 Sum_probs=127.3
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcC--CCCCccEEEECCEecccccHHHhhhh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRL--VELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~--y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
-++++||+++|++. ++|+|+||++++||++||+||||||||||+++|+|+ ++|++|+|.+||.++.+.+
T Consensus 7 ~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~------- 77 (252)
T CHL00131 7 ILEIKNLHASVNEN--EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLE------- 77 (252)
T ss_pred eEEEEeEEEEeCCE--EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCC-------
Confidence 48999999999753 599999999999999999999999999999999998 6899999999999987762
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhh-hccccccccccccc-chhhccc
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS-RLSVIPQDPVLFNG-TIRYNLD 591 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~-~I~~V~Qd~~LFsg-TIrENI~ 591 (677)
.+..++ .+++++|++.+|.+ |+++|+.
T Consensus 78 ---------------------------------------------------~~~~~~~~~~~~~q~~~~~~~~~~~~~l~ 106 (252)
T CHL00131 78 ---------------------------------------------------PEERAHLGIFLAFQYPIEIPGVSNADFLR 106 (252)
T ss_pred ---------------------------------------------------hhhhheeeEEEEeccccccccccHHHHHH
Confidence 222222 36667777766653 5677764
Q ss_pred cCCC----------CC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------
Q psy845 592 PFGR----------CH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------ 651 (677)
Q Consensus 592 ~~~~----------~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------ 651 (677)
.... .. .+++.++++..++.+. ..+... +.+||||||||++||||++++|+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~-~~~LSgG~~qrv~la~al~~~p~llllDEPt 179 (252)
T CHL00131 107 LAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPS------FLSRNV-NEGFSGGEKKRNEILQMALLDSELAILDETD 179 (252)
T ss_pred HhhhhhhcccccccccHHHHHHHHHHHHHHcCCchh------hhcccc-ccCCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 2110 01 1234556666665421 112211 2359999999999999999999976
Q ss_pred ------------------cccccce---ecc---ccc--ccEEEEEeCCeeC
Q psy845 652 ------------------KKSGVNI---TRP---VTS--CDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------------~~~~~TI---LsT---I~~--aDrIlVLd~GrIV 677 (677)
..+++|| .|. +.. ||+|++|++|+++
T Consensus 180 ~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~ 231 (252)
T CHL00131 180 SGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKII 231 (252)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEE
Confidence 1235663 332 333 8999999999974
No 271
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=3.8e-29 Score=248.00 Aligned_cols=145 Identities=23% Similarity=0.261 Sum_probs=117.8
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|++. ++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++++.
T Consensus 2 l~~~~l~~~~~~~--~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~----------- 68 (200)
T PRK13540 2 LDVIELDFDYHDQ--PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKD----------- 68 (200)
T ss_pred EEEEEEEEEeCCe--eEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccC-----------
Confidence 6789999999753 599999999999999999999999999999999999999999999999877532
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~- 594 (677)
...+|++++|++|++.++ ..|++||+.+..
T Consensus 69 ------------------------------------------------~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~ 100 (200)
T PRK13540 69 ------------------------------------------------LCTYQKQLCFVGHRSGINPYLTLRENCLYDIH 100 (200)
T ss_pred ------------------------------------------------HHHHHhheEEeccccccCcCCCHHHHHHHHHh
Confidence 235678899999998886 579999997532
Q ss_pred -CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 595 -RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 595 -~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
...++++.++++..++.+.. +. ...+||||||||++||||++++|+++
T Consensus 101 ~~~~~~~~~~~l~~~~l~~~~-------~~--~~~~LS~G~~~rv~laral~~~p~~l 149 (200)
T PRK13540 101 FSPGAVGITELCRLFSLEHLI-------DY--PCGLLSSGQKRQVALLRLWMSKAKLW 149 (200)
T ss_pred cCcchHHHHHHHHHcCCchhh-------hC--ChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 11233456666666554322 22 34589999999999999999999977
No 272
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.96 E-value=2.7e-29 Score=273.43 Aligned_cols=171 Identities=26% Similarity=0.268 Sum_probs=131.8
Q ss_pred eeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCE----ecccccHHHhhhhccc
Q psy845 441 NVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDF----DIASVELETLRSRLSV 516 (677)
Q Consensus 441 nVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~----dI~~l~~~~~~~~i~~ 516 (677)
++..+|+.. .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||. ++.+.+..
T Consensus 29 ~~~~~~g~~--~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~-------- 98 (382)
T TIGR03415 29 EILDETGLV--VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAA-------- 98 (382)
T ss_pred HHHHhhCCE--EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHH--------
Confidence 455667543 5899999999999999999999999999999999999999999999996 44443100
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHh-hhcccccccccccc-cchhhccccCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR-SRLSVIPQDPVLFN-GTIRYNLDPFG 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR-~~I~~V~Qd~~LFs-gTIrENI~~~~ 594 (677)
...++| ++++||+|++.+|+ .|++||+.++.
T Consensus 99 -----------------------------------------------~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~ 131 (382)
T TIGR03415 99 -----------------------------------------------TLRRLRTHRVSMVFQKFALMPWLTVEENVAFGL 131 (382)
T ss_pred -----------------------------------------------HHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHH
Confidence 233444 58999999999996 79999997531
Q ss_pred ---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 ---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
..+ .++..++++..++.++..+ ...+||||||||++|||||+++|+++
T Consensus 132 ~~~g~~~~~~~~~a~e~le~vgL~~~~~~---------~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~ 202 (382)
T TIGR03415 132 EMQGMPEAERRKRVDEQLELVGLAQWADK---------KPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQ 202 (382)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCchhhcC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHH
Confidence 122 2345678888888766443 34689999999999999999999976
Q ss_pred --------cc-cccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 --------KK-SGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~-~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
.. .++|| .|. + +.||||++|++|+++
T Consensus 203 l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv 244 (382)
T TIGR03415 203 LQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRII 244 (382)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 11 25673 332 2 459999999999984
No 273
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.96 E-value=7.6e-29 Score=257.44 Aligned_cols=170 Identities=26% Similarity=0.363 Sum_probs=125.4
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.++++||+++|+++ +++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+. .
T Consensus 6 ~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~----~----- 75 (272)
T PRK15056 6 GIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQA----L----- 75 (272)
T ss_pred eEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHh----h-----
Confidence 58999999999743 3699999999999999999999999999999999999999999999999886321 1
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc---cccchhhcccc
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL---FNGTIRYNLDP 592 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L---FsgTIrENI~~ 592 (677)
.++.++|+||++.+ +..+++||+.+
T Consensus 76 ----------------------------------------------------~~~~i~~v~q~~~~~~~~~~~~~~~i~~ 103 (272)
T PRK15056 76 ----------------------------------------------------QKNLVAYVPQSEEVDWSFPVLVEDVVMM 103 (272)
T ss_pred ----------------------------------------------------ccceEEEeccccccccCCCcchhhheec
Confidence 12245666666543 34456676642
Q ss_pred CC-----------CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------
Q psy845 593 FG-----------RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------- 651 (677)
Q Consensus 593 ~~-----------~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------- 651 (677)
.. ...++++.++++..++.+... + ...+||||||||++||||++++|+++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-------~--~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD 174 (272)
T PRK15056 104 GRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRH-------R--QIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVD 174 (272)
T ss_pred ccccccccccCCCHHHHHHHHHHHHHcCChhHhc-------C--CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 10 111234566778888765432 2 34689999999999999999999976
Q ss_pred --------------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 --------------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+++|+ .|. + +.||+++++ +|+++
T Consensus 175 ~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~ 220 (272)
T PRK15056 175 VKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVL 220 (272)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEE
Confidence 1235663 222 2 348999766 89874
No 274
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.4e-29 Score=250.64 Aligned_cols=173 Identities=26% Similarity=0.442 Sum_probs=133.1
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
+++.+++.+|++- ..+++||||+++.||.+||.|||||||||+++.|..+..|++|+|.+||.|..+ ++...|++||+
T Consensus 2 l~v~~l~K~y~~~-v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGSK-VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccCH-HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcce
Confidence 5788999999873 348999999999999999999999999999999999999999999999999877 34555555555
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGR- 595 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~- 595 (677)
++.+..+|. ..|.||||.++++
T Consensus 80 l~~e~glY~---------------------------------------------------------RlT~rEnl~~Fa~L 102 (245)
T COG4555 80 LFGERGLYA---------------------------------------------------------RLTARENLKYFARL 102 (245)
T ss_pred ecCCcChhh---------------------------------------------------------hhhHHHHHHHHHHH
Confidence 555554544 5699999987653
Q ss_pred --CChH----HHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------
Q psy845 596 --CHDT----ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------ 651 (677)
Q Consensus 596 --~sde----eI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------ 651 (677)
.++. ++.+..|..++.+...+ +..++|-|+|||++||||+++||+++
T Consensus 103 ~~l~~~~~kari~~l~k~l~l~~~~~r---------Rv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~ 173 (245)
T COG4555 103 NGLSRKEIKARIAELSKRLQLLEYLDR---------RVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFH 173 (245)
T ss_pred hhhhhhHHHHHHHHHHHHhChHHHHHH---------HHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHH
Confidence 2333 34444445555444332 56789999999999999999999976
Q ss_pred ------cccccce--eccc----c-cccEEEEEeCCeeC
Q psy845 652 ------KKSGVNI--TRPV----T-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------~~~~~TI--LsTI----~-~aDrIlVLd~GrIV 677 (677)
..+|+++ .+++ + -|||++++.+|++|
T Consensus 174 dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv 212 (245)
T COG4555 174 DFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVV 212 (245)
T ss_pred HHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEE
Confidence 1235553 2222 2 49999999999985
No 275
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.96 E-value=6.6e-29 Score=240.35 Aligned_cols=137 Identities=37% Similarity=0.458 Sum_probs=114.9
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+++|++++|+++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~---------------- 63 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG---------------- 63 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC----------------
Confidence 4789999999754 46999999999999999999999999999999999999999999998752
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRC 596 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~ 596 (677)
++++|++|++.++++|++||+.+.
T Consensus 64 -----------------------------------------------------~~i~~~~q~~~~~~~tv~~nl~~~--- 87 (166)
T cd03223 64 -----------------------------------------------------EDLLFLPQRPYLPLGTLREQLIYP--- 87 (166)
T ss_pred -----------------------------------------------------ceEEEECCCCccccccHHHHhhcc---
Confidence 357888888888889999999742
Q ss_pred ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc---------------------ccc
Q psy845 597 HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK---------------------KSG 655 (677)
Q Consensus 597 sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~---------------------~~~ 655 (677)
...+||||||||++||||++++|+++. ..+
T Consensus 88 -----------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~ 138 (166)
T cd03223 88 -----------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELG 138 (166)
T ss_pred -----------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhC
Confidence 246899999999999999999999761 113
Q ss_pred cce------ecccccccEEEEEeCCe
Q psy845 656 VNI------TRPVTSCDKVLVMDNGQ 675 (677)
Q Consensus 656 ~TI------LsTI~~aDrIlVLd~Gr 675 (677)
+|+ .+....||+|++|++|-
T Consensus 139 ~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 139 ITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred CEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 452 22345699999999874
No 276
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=1.3e-28 Score=245.63 Aligned_cols=143 Identities=22% Similarity=0.293 Sum_probs=118.6
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|++. .+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.+++..
T Consensus 3 l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~----------- 69 (207)
T PRK13539 3 LEGEDLACVRGGR--VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDP----------- 69 (207)
T ss_pred EEEEeEEEEECCe--EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcch-----------
Confidence 7899999999753 599999999999999999999999999999999999999999999999875321
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~- 594 (677)
..|++++|++|++.++ +.|++||+.+..
T Consensus 70 --------------------------------------------------~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~ 99 (207)
T PRK13539 70 --------------------------------------------------DVAEACHYLGHRNAMKPALTVAENLEFWAA 99 (207)
T ss_pred --------------------------------------------------hhHhhcEEecCCCcCCCCCcHHHHHHHHHH
Confidence 1577888888877665 689999986422
Q ss_pred --CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 595 --RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 595 --~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
...++++.++++..++.++... ...+||||||||++||||++++|+++
T Consensus 100 ~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qrl~la~al~~~p~ll 149 (207)
T PRK13539 100 FLGGEELDIAAALEAVGLAPLAHL---------PFGYLSAGQKRRVALARLLVSNRPIW 149 (207)
T ss_pred hcCCcHHHHHHHHHHcCCHHHHcC---------ChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 2335567888888888654321 34589999999999999999999876
No 277
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.96 E-value=6.5e-29 Score=245.66 Aligned_cols=145 Identities=23% Similarity=0.308 Sum_probs=121.0
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|++. ++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++...
T Consensus 1 l~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~----------- 67 (198)
T TIGR01189 1 LAARNLACSRGER--MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQ----------- 67 (198)
T ss_pred CEEEEEEEEECCE--EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccc-----------
Confidence 4689999999753 699999999999999999999999999999999999999999999999987654
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~- 594 (677)
+ ...|++++|++|++.+|. .|++||+....
T Consensus 68 -----------------------------------------------~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 99 (198)
T TIGR01189 68 -----------------------------------------------R-DEPHRNILYLGHLPGLKPELSALENLHFWAA 99 (198)
T ss_pred -----------------------------------------------h-HHhhhheEEeccCcccccCCcHHHHHHHHHH
Confidence 2 245678899999888875 79999996432
Q ss_pred --CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 595 --RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 595 --~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
...++++.++++..++.++... ...+||||||||++||||++++|+++
T Consensus 100 ~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qrv~la~al~~~p~ll 149 (198)
T TIGR01189 100 IHGGAQRTIEDALAAVGLTGFEDL---------PAAQLSAGQQRRLALARLWLSRAPLW 149 (198)
T ss_pred HcCCcHHHHHHHHHHcCCHHHhcC---------ChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 1123457788888888765432 34689999999999999999999977
No 278
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=1.6e-28 Score=246.16 Aligned_cols=144 Identities=26% Similarity=0.271 Sum_probs=115.7
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-++++|++++|++. ++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||+++.+.
T Consensus 11 ~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---------- 78 (214)
T PRK13543 11 LLAAHALAFSRNEE--PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---------- 78 (214)
T ss_pred eEEEeeEEEecCCc--eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch----------
Confidence 48999999999753 599999999999999999999999999999999999999999999999887432
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-chhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TIrENI~~~~ 594 (677)
..+++++|++|++.++.+ |++||+.+..
T Consensus 79 ---------------------------------------------------~~~~~i~~~~q~~~~~~~~t~~e~l~~~~ 107 (214)
T PRK13543 79 ---------------------------------------------------DRSRFMAYLGHLPGLKADLSTLENLHFLC 107 (214)
T ss_pred ---------------------------------------------------hhhhceEEeecCcccccCCcHHHHHHHHH
Confidence 224568888888888865 9999985421
Q ss_pred ---CC-ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 595 ---RC-HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 595 ---~~-sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
.. .++...++++..++.+. +++ ...+||||||||++||||++++|+++
T Consensus 108 ~~~~~~~~~~~~~~l~~~~l~~~-------~~~--~~~~LS~G~~qrv~laral~~~p~ll 159 (214)
T PRK13543 108 GLHGRRAKQMPGSALAIVGLAGY-------EDT--LVRQLSAGQKKRLALARLWLSPAPLW 159 (214)
T ss_pred HhcCCcHHHHHHHHHHHcCChhh-------ccC--ChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 11 22344556666655332 333 34689999999999999999999976
No 279
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=5.5e-29 Score=286.98 Aligned_cols=131 Identities=24% Similarity=0.306 Sum_probs=95.0
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--ccc-ccchhhcccc-CCCCChHHH
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLF-NGTIRYNLDP-FGRCHDTEL 601 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LF-sgTIrENI~~-~~~~sdeeI 601 (677)
+.+|.||||||||+++|+|+.+|++|+|.+++. .++||++|++ .+. +.|+.+|+.. .....++++
T Consensus 342 ~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 410 (638)
T PRK10636 342 GLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKL 410 (638)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEEEEecCcchhhCCccchHHHHHHHhCchhhHHHH
Confidence 667889999999999999999999999999741 2699999985 344 3477777632 112234456
Q ss_pred HHHHHHccchh-hHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------------cccccce
Q psy845 602 WDALEKSHLKS-KVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------------KKSGVNI 658 (677)
Q Consensus 602 ~~Al~~a~l~e-fI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------------~~~~~TI 658 (677)
.++++..++.+ .. +. ...+||||||||++||||++++|+++ ... .||
T Consensus 411 ~~~L~~~~l~~~~~-------~~--~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~-gtv 480 (638)
T PRK10636 411 RDYLGGFGFQGDKV-------TE--ETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFE-GAL 480 (638)
T ss_pred HHHHHHcCCChhHh-------cC--chhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcC-CeE
Confidence 66666666532 21 11 45789999999999999999999977 122 252
Q ss_pred ---ecc---c-ccccEEEEEeCCeeC
Q psy845 659 ---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 659 ---LsT---I-~~aDrIlVLd~GrIV 677 (677)
.|. + +-||||++|++|+++
T Consensus 481 i~vSHd~~~~~~~~d~i~~l~~G~i~ 506 (638)
T PRK10636 481 VVVSHDRHLLRSTTDDLYLVHDGKVE 506 (638)
T ss_pred EEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 222 2 249999999999973
No 280
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.96 E-value=1.1e-28 Score=245.24 Aligned_cols=148 Identities=24% Similarity=0.326 Sum_probs=118.6
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcC--CCCCccEEEECCEecccccHHHhhhhc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRL--VELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~--y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
++++|++++|++ +++++|+||++++||++||+||||||||||+++|+|+ ++|++|+|.+||+++.+.
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~--------- 69 (200)
T cd03217 1 LEIKDLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDL--------- 69 (200)
T ss_pred CeEEEEEEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcC---------
Confidence 468999999974 3699999999999999999999999999999999999 589999999999998776
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHH-Hhhhccccccccccccc-chhhcccc
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET-LRSRLSVIPQDPVLFNG-TIRYNLDP 592 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-LR~~I~~V~Qd~~LFsg-TIrENI~~ 592 (677)
+... .|++++|+||++.+|.+ |+++|+
T Consensus 70 -------------------------------------------------~~~~~~~~~i~~v~q~~~~~~~~~~~~~l-- 98 (200)
T cd03217 70 -------------------------------------------------PPEERARLGIFLAFQYPPEIPGVKNADFL-- 98 (200)
T ss_pred -------------------------------------------------CHHHHhhCcEEEeecChhhccCccHHHHH--
Confidence 2222 34568888888888765 344443
Q ss_pred CCCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------------
Q psy845 593 FGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------------- 651 (677)
Q Consensus 593 ~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------------- 651 (677)
.. ...+||||||||++||||++++|+++
T Consensus 99 ----------------------~~---------~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L 147 (200)
T cd03217 99 ----------------------RY---------VNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVI 147 (200)
T ss_pred ----------------------hh---------ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 00 12489999999999999999999976
Q ss_pred ---cccccce------ecccc--cccEEEEEeCCeeC
Q psy845 652 ---KKSGVNI------TRPVT--SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---~~~~~TI------LsTI~--~aDrIlVLd~GrIV 677 (677)
..+++|| ...+. .||+|++|++|+++
T Consensus 148 ~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~ 184 (200)
T cd03217 148 NKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIV 184 (200)
T ss_pred HHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEE
Confidence 1135663 23344 59999999999973
No 281
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=8e-30 Score=252.07 Aligned_cols=175 Identities=28% Similarity=0.436 Sum_probs=136.3
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
+.+..+|+..+|+.+ +|++|+||++++||.||+.||+||||||...++.|+..|++|+|.+||.|++.++
T Consensus 3 ~~L~a~~l~K~y~kr--~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lP-------- 72 (243)
T COG1137 3 STLVAENLAKSYKKR--KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLP-------- 72 (243)
T ss_pred cEEEehhhhHhhCCe--eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCC--------
Confidence 357889999999865 6999999999999999999999999999999999999999999999999999983
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~ 593 (677)
-.+.-|-.|||.|||+.+| ..|++|||...
T Consensus 73 -------------------------------------------------m~~RArlGigYLpQE~SIFr~LtV~dNi~~v 103 (243)
T COG1137 73 -------------------------------------------------MHKRARLGIGYLPQEASIFRKLTVEDNIMAV 103 (243)
T ss_pred -------------------------------------------------hHHHhhcCcccccccchHhhcCcHHHHHHHH
Confidence 2335577899999999999 56999999532
Q ss_pred CCCCh---------HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------
Q psy845 594 GRCHD---------TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------- 651 (677)
Q Consensus 594 ~~~sd---------eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------- 651 (677)
-+..+ +++.+.+++-++.+.-.+ .|..||||||.|+-|||||..||+.+
T Consensus 104 lE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~---------~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPia 174 (243)
T COG1137 104 LEIREKDLKKAERKEELDALLEEFHITHLRDS---------KAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIA 174 (243)
T ss_pred HhhhhcchhHHHHHHHHHHHHHHhchHHHhcC---------cccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchh
Confidence 11111 123334444443322111 68999999999999999999999854
Q ss_pred ---------cccccc----e-----ecccccccEEEEEeCCeeC
Q psy845 652 ---------KKSGVN----I-----TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~~~~T----I-----LsTI~~aDrIlVLd~GrIV 677 (677)
.++++- | -.|+.-|||.+++.+|++.
T Consensus 175 V~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vl 218 (243)
T COG1137 175 VIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVL 218 (243)
T ss_pred HHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEE
Confidence 112222 2 2456679999999999974
No 282
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.9e-28 Score=281.76 Aligned_cols=178 Identities=29% Similarity=0.382 Sum_probs=135.7
Q ss_pred cEEEEeeeEEeCCC---------CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccccc
Q psy845 436 TIKFKNVSLRYRDN---------WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE 506 (677)
Q Consensus 436 ~I~fknVsFsY~~~---------~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~ 506 (677)
-++++|++++|+.+ ...+++|+||+|++||++|||||||||||||+++|+|+.+|++|+|.++|.++.+.+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 48999999999631 135999999999999999999999999999999999999999999999999987651
Q ss_pred HHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--ccc-c
Q psy845 507 LETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLF-N 583 (677)
Q Consensus 507 ~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LF-s 583 (677)
.. ....+|++++||+|++ .++ .
T Consensus 393 ~~-------------------------------------------------------~~~~~~~~i~~v~Q~~~~~l~~~ 417 (623)
T PRK10261 393 PG-------------------------------------------------------KLQALRRDIQFIFQDPYASLDPR 417 (623)
T ss_pred HH-------------------------------------------------------HHHHhcCCeEEEecCchhhcCCC
Confidence 10 2335677889999987 365 4
Q ss_pred cchhhccccC----CCCC----hHHHHHHHHHccch-hhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---
Q psy845 584 GTIRYNLDPF----GRCH----DTELWDALEKSHLK-SKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--- 651 (677)
Q Consensus 584 gTIrENI~~~----~~~s----deeI~~Al~~a~l~-efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--- 651 (677)
.|++||+... +... ++++.++++..++. +...+ ...+||||||||++|||||+.+|+++
T Consensus 418 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~---------~~~~LSgGqrQRv~iAraL~~~p~llllD 488 (623)
T PRK10261 418 QTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWR---------YPHEFSGGQRQRICIARALALNPKVIIAD 488 (623)
T ss_pred CCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhC---------CcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 6999998531 1111 23456667777764 22222 45799999999999999999999976
Q ss_pred ---------------------ccc-ccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 ---------------------KKS-GVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------------------~~~-~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+ +.|| .|. + ..||||+||++|+++
T Consensus 489 EPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv 543 (623)
T PRK10261 489 EAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIV 543 (623)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 112 5563 332 3 349999999999984
No 283
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.95 E-value=2.6e-28 Score=250.30 Aligned_cols=166 Identities=24% Similarity=0.324 Sum_probs=127.1
Q ss_pred EEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccc
Q psy845 438 KFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVI 517 (677)
Q Consensus 438 ~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v 517 (677)
+++||+++ .+|+|+||++++||++||+||||||||||+++|+|+++ .+|+|.+||.++.+.
T Consensus 2 ~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~------------ 62 (248)
T PRK03695 2 QLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAW------------ 62 (248)
T ss_pred cccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcC------------
Confidence 46778774 28999999999999999999999999999999999985 599999999998776
Q ss_pred cCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc-cccchhhccccCCC-
Q psy845 518 PQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-FNGTIRYNLDPFGR- 595 (677)
Q Consensus 518 ~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L-FsgTIrENI~~~~~- 595 (677)
+.+.+|+.++|+||++.+ ++.|++||+.++..
T Consensus 63 ----------------------------------------------~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~ 96 (248)
T PRK03695 63 ----------------------------------------------SAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPD 96 (248)
T ss_pred ----------------------------------------------CHHHHhhheEEecccCccCCCccHHHHHHhcCcc
Confidence 555677788999998754 47899999975421
Q ss_pred -CC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhc-------cchhh------------
Q psy845 596 -CH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLR-------KTKKK------------ 651 (677)
Q Consensus 596 -~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr-------~p~IL------------ 651 (677)
.+ ++++.++++..++.+... . ....||||||||++||||+++ +|+++
T Consensus 97 ~~~~~~~~~~~~~~l~~~~l~~~~~-------~--~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~ 167 (248)
T PRK03695 97 KTRTEAVASALNEVAEALGLDDKLG-------R--SVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVA 167 (248)
T ss_pred CCCcHHHHHHHHHHHHHcCCHhHhc-------C--CcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHH
Confidence 11 234556666666644322 2 467999999999999999997 55755
Q ss_pred ------------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 ------------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+++|+ .|. + +.||+|++|++|+++
T Consensus 168 ~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~ 212 (248)
T PRK03695 168 QQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLL 212 (248)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 1235663 232 2 359999999999974
No 284
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.95 E-value=1.3e-28 Score=250.51 Aligned_cols=159 Identities=26% Similarity=0.384 Sum_probs=118.6
Q ss_pred CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCcccccccccc
Q psy845 451 PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGR 530 (677)
Q Consensus 451 ~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~ 530 (677)
+++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.+.
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~------------------------- 88 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR------------------------- 88 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-------------------------
Confidence 4699999999999999999999999999999999999999999999999875332
Q ss_pred CCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccc-cccccc-ccchhhccccCC---CCChHH----H
Q psy845 531 TGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIP-QDPVLF-NGTIRYNLDPFG---RCHDTE----L 601 (677)
Q Consensus 531 n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~-Qd~~LF-sgTIrENI~~~~---~~sdee----I 601 (677)
...+|++++|++ |++.+| +.|++||+.... ..+.++ +
T Consensus 89 ----------------------------------~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 134 (236)
T cd03267 89 ----------------------------------RKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRL 134 (236)
T ss_pred ----------------------------------chhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCCCHHHHHHHH
Confidence 234567888886 556665 579999985321 122222 3
Q ss_pred HHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------------c--c-ccc
Q psy845 602 WDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------------K--K-SGV 656 (677)
Q Consensus 602 ~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------------~--~-~~~ 656 (677)
.++++..++.+ ..|+ ...+||||||||++||||++++|+++ . . .++
T Consensus 135 ~~~l~~~gl~~-------~~~~--~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 205 (236)
T cd03267 135 DELSELLDLEE-------LLDT--PVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGT 205 (236)
T ss_pred HHHHHHcCChh-------HhcC--ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCC
Confidence 33444444432 2333 35689999999999999999999976 1 1 245
Q ss_pred ce---ec---ccc-cccEEEEEeCCeeC
Q psy845 657 NI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 657 TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
|| .| .+. .||+|++|++|+++
T Consensus 206 tiiivsH~~~~~~~~~d~i~~l~~G~i~ 233 (236)
T cd03267 206 TVLLTSHYMKDIEALARRVLVIDKGRLL 233 (236)
T ss_pred EEEEEecCHHHHHHhCCEEEEEeCCEEE
Confidence 63 22 233 38999999999974
No 285
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.95 E-value=2.8e-28 Score=235.24 Aligned_cols=129 Identities=29% Similarity=0.522 Sum_probs=110.1
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|++. ++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 l~~~~l~~~~~~~--~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~----------- 67 (163)
T cd03216 1 LELRGITKRFGGV--KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFA----------- 67 (163)
T ss_pred CEEEEEEEEECCe--EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcC-----------
Confidence 4789999999753 699999999999999999999999999999999999999999999999988665
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhH-HHHhhhcccccccccccccchhhccccCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL-ETLRSRLSVIPQDPVLFNGTIRYNLDPFGR 595 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~-~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~ 595 (677)
+. +..|++++|++|
T Consensus 68 -----------------------------------------------~~~~~~~~~i~~~~q------------------ 82 (163)
T cd03216 68 -----------------------------------------------SPRDARRAGIAMVYQ------------------ 82 (163)
T ss_pred -----------------------------------------------CHHHHHhcCeEEEEe------------------
Confidence 32 346778999988
Q ss_pred CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------------
Q psy845 596 CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------------ 651 (677)
Q Consensus 596 ~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------------ 651 (677)
||||||||++||||++++|+++
T Consensus 83 ----------------------------------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~ 128 (163)
T cd03216 83 ----------------------------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRL 128 (163)
T ss_pred ----------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999976
Q ss_pred cccccce---ecc---cc-cccEEEEEeCCeeC
Q psy845 652 KKSGVNI---TRP---VT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ~~~~~TI---LsT---I~-~aDrIlVLd~GrIV 677 (677)
..++.|+ .|. +. .|||+++|++|+++
T Consensus 129 ~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~ 161 (163)
T cd03216 129 RAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161 (163)
T ss_pred HHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 1235563 222 32 49999999999974
No 286
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.95 E-value=3.2e-28 Score=281.15 Aligned_cols=178 Identities=26% Similarity=0.370 Sum_probs=137.7
Q ss_pred cEEEEeeeEEeCCC--CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 436 TIKFKNVSLRYRDN--WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 436 ~I~fknVsFsY~~~--~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
-++++|++++|+++ .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+..
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~----- 78 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDAD----- 78 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHH-----
Confidence 48999999999743 24699999999999999999999999999999999999999999999999998876111
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHH-hhhcccccccccccc-cchhhccc
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL-RSRLSVIPQDPVLFN-GTIRYNLD 591 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~L-R~~I~~V~Qd~~LFs-gTIrENI~ 591 (677)
+..++ |+.++|++|++.+|+ .|+.||+.
T Consensus 79 --------------------------------------------------~~~~~~~~~i~~v~q~~~l~~~~tv~enl~ 108 (648)
T PRK10535 79 --------------------------------------------------ALAQLRREHFGFIFQRYHLLSHLTAAQNVE 108 (648)
T ss_pred --------------------------------------------------HHHHHHhccEEEEeCCcccCCCCCHHHHHH
Confidence 11223 578999999999985 59999996
Q ss_pred cCC---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------
Q psy845 592 PFG---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------- 651 (677)
Q Consensus 592 ~~~---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------- 651 (677)
+.. ..+ +++..+.++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~---------~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s 179 (648)
T PRK10535 109 VPAVYAGLERKQRLLRAQELLQRLGLEDRVEY---------QPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHS 179 (648)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCChhhhcC---------CcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH
Confidence 421 111 2234555556655544332 45689999999999999999999976
Q ss_pred -----------cccccce------ecccccccEEEEEeCCeeC
Q psy845 652 -----------KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----------~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
..+++|+ ...++.|||+++|++|+++
T Consensus 180 ~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~ 222 (648)
T PRK10535 180 GEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIV 222 (648)
T ss_pred HHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEE
Confidence 1235663 2345579999999999974
No 287
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.95 E-value=4.3e-28 Score=249.73 Aligned_cols=139 Identities=28% Similarity=0.385 Sum_probs=110.3
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-++++||+++|++. ++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++| +.+++
T Consensus 4 ~l~~~~l~~~~~~~--~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~ 70 (251)
T PRK09544 4 LVSLENVSVSFGQR--RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIG 70 (251)
T ss_pred EEEEeceEEEECCc--eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEE
Confidence 48899999999753 599999999999999999999999999999999999999999999876 12355
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGR 595 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~ 595 (677)
|+||++.++.. +..|+++|+.....
T Consensus 71 ~v~q~~~~~~~-------------------------------------------------------l~~~~~~~~~~~~~ 95 (251)
T PRK09544 71 YVPQKLYLDTT-------------------------------------------------------LPLTVNRFLRLRPG 95 (251)
T ss_pred Eeccccccccc-------------------------------------------------------cChhHHHHHhcccc
Confidence 55555433220 01366777643333
Q ss_pred CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 596 CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 596 ~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
.+++++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 96 ~~~~~~~~~l~~~gl~~~~~~---------~~~~LSgGq~qrv~laral~~~p~ll 142 (251)
T PRK09544 96 TKKEDILPALKRVQAGHLIDA---------PMQKLSGGETQRVLLARALLNRPQLL 142 (251)
T ss_pred ccHHHHHHHHHHcCChHHHhC---------ChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 456778889999998766543 35689999999999999999999976
No 288
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.95 E-value=3.2e-28 Score=246.71 Aligned_cols=152 Identities=28% Similarity=0.325 Sum_probs=117.8
Q ss_pred ccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCC
Q psy845 454 LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGA 533 (677)
Q Consensus 454 LknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~ 533 (677)
|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~---------------------------- 52 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEP---------------------------- 52 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCC----------------------------
Confidence 5899999999999999999999999999999999999999999999987654
Q ss_pred CCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccC-----CCCChH----HHHH
Q psy845 534 GKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPF-----GRCHDT----ELWD 603 (677)
Q Consensus 534 ~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~-----~~~sde----eI~~ 603 (677)
+. ..+|++|++.+|. .|++||+.+. ...+++ ++.+
T Consensus 53 ------------------------------~~-----~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~ 97 (230)
T TIGR01184 53 ------------------------------GP-----DRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEE 97 (230)
T ss_pred ------------------------------Ch-----hheEEecCcccCCCCCHHHHHHHHHHhcccCCCHHHHHHHHHH
Confidence 21 1378899988886 6999998642 122222 3455
Q ss_pred HHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------------cc-cccce
Q psy845 604 ALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------------KK-SGVNI 658 (677)
Q Consensus 604 Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------------~~-~~~TI 658 (677)
+++..++.+...+ ...+||||||||++||||++++|+++ .. .++||
T Consensus 98 ~l~~~~l~~~~~~---------~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~ti 168 (230)
T TIGR01184 98 HIALVGLTEAADK---------RPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTV 168 (230)
T ss_pred HHHHcCCHHHHcC---------ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 6666666543322 35689999999999999999999976 11 25663
Q ss_pred ---ecc---c-ccccEEEEEeCCeeC
Q psy845 659 ---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 659 ---LsT---I-~~aDrIlVLd~GrIV 677 (677)
.|. + +.||+|++|++|+++
T Consensus 169 i~~sH~~~~~~~~~d~v~~l~~G~i~ 194 (230)
T TIGR01184 169 LMVTHDVDEALLLSDRVVMLTNGPAA 194 (230)
T ss_pred EEEeCCHHHHHHhcCEEEEEeCCcEe
Confidence 222 2 349999999999984
No 289
>PRK13409 putative ATPase RIL; Provisional
Probab=99.95 E-value=1e-28 Score=282.37 Aligned_cols=104 Identities=23% Similarity=0.257 Sum_probs=82.6
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC-CC-ChHHHH
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG-RC-HDTELW 602 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~-~~-sdeeI~ 602 (677)
+.+|.||||||||+++|.|+.+|++|+|.++ .+++|+||++.++ +.|++||+.... .. .++...
T Consensus 369 ~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 435 (590)
T PRK13409 369 GIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKS 435 (590)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHH
Confidence 4558899999999999999999999999875 1599999998764 779999997532 12 233456
Q ss_pred HHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 603 DALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 603 ~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 436 ~~L~~l~l~~~~~~---------~~~~LSGGe~QRvaiAraL~~~p~ll 475 (590)
T PRK13409 436 EIIKPLQLERLLDK---------NVKDLSGGELQRVAIAACLSRDADLY 475 (590)
T ss_pred HHHHHCCCHHHHhC---------CcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 67777777544322 45789999999999999999999976
No 290
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.95 E-value=4.2e-28 Score=243.76 Aligned_cols=152 Identities=22% Similarity=0.269 Sum_probs=114.1
Q ss_pred EEEEeeeEEeCC----C-CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECC--E--ecccccH
Q psy845 437 IKFKNVSLRYRD----N-WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD--F--DIASVEL 507 (677)
Q Consensus 437 I~fknVsFsY~~----~-~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG--~--dI~~l~~ 507 (677)
++++|++++|++ + .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+|| . ++.+.+.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 689999999963 1 24699999999999999999999999999999999999999999999984 2 4433310
Q ss_pred HHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHH-hhhcccccccccccc-cc
Q psy845 508 ETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL-RSRLSVIPQDPVLFN-GT 585 (677)
Q Consensus 508 ~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~L-R~~I~~V~Qd~~LFs-gT 585 (677)
. +..++ ++.++|++|++.++. .|
T Consensus 82 ~-------------------------------------------------------~~~~~~~~~i~~~~q~~~~~~~~t 106 (224)
T TIGR02324 82 R-------------------------------------------------------EVLEVRRKTIGYVSQFLRVIPRVS 106 (224)
T ss_pred H-------------------------------------------------------HHHHHHhcceEEEecccccCCCcc
Confidence 0 12233 457999999988875 58
Q ss_pred hhhccccC---CCCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 586 IRYNLDPF---GRCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 586 IrENI~~~---~~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
++||+... .... ++++.++++..++.+... +. .+.+||||||||++||||++++|+++
T Consensus 107 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------~~--~~~~LS~G~~qrl~laral~~~p~ll 171 (224)
T TIGR02324 107 ALEVVAEPLLERGVPREAARARARELLARLNIPERLW------HL--PPATFSGGEQQRVNIARGFIADYPIL 171 (224)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh------hC--CcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 99998531 1122 234455666666543221 11 46799999999999999999999876
No 291
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.95 E-value=5.6e-28 Score=238.71 Aligned_cols=141 Identities=20% Similarity=0.267 Sum_probs=115.0
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++|++++|++ +.++ ++||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 2 l~~~~l~~~~~~--~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~----------- 67 (195)
T PRK13541 2 LSLHQLQFNIEQ--KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNI----------- 67 (195)
T ss_pred eEEEEeeEEECC--cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChh-----------
Confidence 689999999964 3344 59999999999999999999999999999999999999999999887543
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc-cccchhhccccCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-FNGTIRYNLDPFGR 595 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L-FsgTIrENI~~~~~ 595 (677)
+ ++.++|++|++.+ ++.|++||+.+...
T Consensus 68 -----------------------------------------------~----~~~~~~~~~~~~~~~~~tv~~~l~~~~~ 96 (195)
T PRK13541 68 -----------------------------------------------A----KPYCTYIGHNLGLKLEMTVFENLKFWSE 96 (195)
T ss_pred -----------------------------------------------h----hhhEEeccCCcCCCccCCHHHHHHHHHH
Confidence 1 2357888887644 67899999965321
Q ss_pred --CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 596 --CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 596 --~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
..++++.++++..++.+...+ .+.+||||||||++||||++++|+++
T Consensus 97 ~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~~rl~la~al~~~p~~l 145 (195)
T PRK13541 97 IYNSAETLYAAIHYFKLHDLLDE---------KCYSLSSGMQKIVAIARLIACQSDLW 145 (195)
T ss_pred hcccHHHHHHHHHHcCCHhhhcc---------ChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 134567777888887654332 46799999999999999999999976
No 292
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.95 E-value=5e-28 Score=237.66 Aligned_cols=138 Identities=27% Similarity=0.330 Sum_probs=111.6
Q ss_pred CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCcccccccccc
Q psy845 451 PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGR 530 (677)
Q Consensus 451 ~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~ 530 (677)
+.+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++..-+
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~------------------------ 60 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSR------------------------ 60 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccc------------------------
Confidence 36999999999999999999999999999999999999999999999999874210
Q ss_pred CCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhccccCC---CCCh----HHH
Q psy845 531 TGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYNLDPFG---RCHD----TEL 601 (677)
Q Consensus 531 n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrENI~~~~---~~sd----eeI 601 (677)
.+...+|+.++|++|++ .+|..|++||+.+.. ..++ +++
T Consensus 61 --------------------------------~~~~~~~~~i~~~~q~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~ 108 (190)
T TIGR01166 61 --------------------------------KGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRV 108 (190)
T ss_pred --------------------------------cchHHHHhhEEEEecChhhccccccHHHHHHHHHHHcCCCHHHHHHHH
Confidence 03456788899999998 578889999996421 1222 345
Q ss_pred HHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhcc
Q psy845 602 WDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKKK 653 (677)
Q Consensus 602 ~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~~ 653 (677)
.++++..++.++..+ ...+||||||||++||||++++|+++.+
T Consensus 109 ~~~l~~~~l~~~~~~---------~~~~LS~G~~qrv~laral~~~p~llll 151 (190)
T TIGR01166 109 REALTAVGASGLRER---------PTHCLSGGEKKRVAIAGAVAMRPDVLLL 151 (190)
T ss_pred HHHHHHcCchhhhhC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 667777777654433 3468999999999999999999998843
No 293
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.95 E-value=9.2e-28 Score=276.14 Aligned_cols=192 Identities=25% Similarity=0.386 Sum_probs=135.9
Q ss_pred ccEEEEeeeEEeCCC--CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhh
Q psy845 435 GTIKFKNVSLRYRDN--WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS 512 (677)
Q Consensus 435 g~I~fknVsFsY~~~--~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~ 512 (677)
.-++++|++++|+++ ..++++|+||++++||++|||||||||||||+++|+|+++|++|+|.++|+++..-.
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~------ 84 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRS------ 84 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccc------
Confidence 358999999999642 236999999999999999999999999999999999999999999999998763210
Q ss_pred hcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHh-hhcccccccc--cccc-cchhh
Q psy845 513 RLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR-SRLSVIPQDP--VLFN-GTIRY 588 (677)
Q Consensus 513 ~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR-~~I~~V~Qd~--~LFs-gTIrE 588 (677)
++ + +.+.+. .......+| ++||||+|+| .++. .|++|
T Consensus 85 ------~~--~-----------------------------~~~~~~--~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e 125 (623)
T PRK10261 85 ------RQ--V-----------------------------IELSEQ--SAAQMRHVRGADMAMIFQEPMTSLNPVFTVGE 125 (623)
T ss_pred ------cc--c-----------------------------cccccC--CHHHHHHHhCCCEEEEEeCchhhcCCCCCHHH
Confidence 00 0 000000 000223444 5799999998 5665 69999
Q ss_pred ccccC----CCCCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------
Q psy845 589 NLDPF----GRCHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------- 651 (677)
Q Consensus 589 NI~~~----~~~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------- 651 (677)
|+... ...+. +++.++++..|+.+.-. -.+. ...+||||||||++|||||+.+|+++
T Consensus 126 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~----~~~~--~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~L 199 (623)
T PRK10261 126 QIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQT----ILSR--YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTAL 199 (623)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhh----HHhC--CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcc
Confidence 99642 11222 34566677776642100 0111 45799999999999999999999976
Q ss_pred ---------------ccc-ccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 ---------------KKS-GVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------------~~~-~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+ ++|| .|. + +-||||+||++|+++
T Consensus 200 D~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~ 248 (623)
T PRK10261 200 DVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAV 248 (623)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeec
Confidence 112 5663 332 2 349999999999985
No 294
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.95 E-value=8.3e-28 Score=222.55 Aligned_cols=130 Identities=45% Similarity=0.628 Sum_probs=114.1
Q ss_pred ccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCC
Q psy845 454 LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGA 533 (677)
Q Consensus 454 LknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~ 533 (677)
|+|+|+++++||+++|+||||||||||+++|+|.++|++|+|.+||.++.+.
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~---------------------------- 52 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDI---------------------------- 52 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTS----------------------------
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccc----------------------------
Confidence 7899999999999999999999999999999999999999999999999886
Q ss_pred CCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccc-hhhccccCCCCChHHHHHHHHHccchh
Q psy845 534 GKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT-IRYNLDPFGRCHDTELWDALEKSHLKS 612 (677)
Q Consensus 534 ~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgT-IrENI~~~~~~sdeeI~~Al~~a~l~e 612 (677)
+....|+.+++++|++.+|++. ++|| ..++++.++++..++.+
T Consensus 53 ------------------------------~~~~~~~~i~~~~~~~~~~~~~tv~~~------~~~~~~~~~l~~l~~~~ 96 (137)
T PF00005_consen 53 ------------------------------DIEELRRRIGYVPQDPQLFPGLTVREN------ESDERIEEVLKKLGLED 96 (137)
T ss_dssp ------------------------------HHHHHHHTEEEEESSHCHHTTSBHHHH------HHHHHHHHHHHHTTHGG
T ss_pred ------------------------------ccccccccccccccccccccccccccc------ccccccccccccccccc
Confidence 7788899999999999998764 9999 34677888888888766
Q ss_pred hHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhhccc
Q psy845 613 KVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKKKKS 654 (677)
Q Consensus 613 fI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL~~~ 654 (677)
+ .++.+ ++.+||||||||++||||++++|+++...
T Consensus 97 ~-------~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllD 133 (137)
T PF00005_consen 97 L-------LDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLD 133 (137)
T ss_dssp G-------TGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEE
T ss_pred c-------cccccccccchhhHHHHHHHHHHHHHHcCCCEEEEe
Confidence 3 23333 56899999999999999999999987544
No 295
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=4e-28 Score=246.42 Aligned_cols=173 Identities=25% Similarity=0.351 Sum_probs=133.3
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++.+|++.+|++- .+++|+||++++||++||+|||||||||++|++.|+|+|++|+|.++|.||+.++
T Consensus 5 L~v~~l~k~FGGl--~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~---------- 72 (250)
T COG0411 5 LEVRGLSKRFGGL--TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLP---------- 72 (250)
T ss_pred eeeccceeecCCE--EEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCC----------
Confidence 5788999999764 5999999999999999999999999999999999999999999999999999984
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFGR 595 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~~ 595 (677)
+.+--|..|+--+|.+.+| +.|+-||+..+..
T Consensus 73 -----------------------------------------------p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~ 105 (250)
T COG0411 73 -----------------------------------------------PHRIARLGIARTFQITRLFPGLTVLENVAVGAH 105 (250)
T ss_pred -----------------------------------------------HHHHHhccceeecccccccCCCcHHHHHHHHhh
Confidence 3334456666677777777 4589999853210
Q ss_pred -------------C--Ch----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc----
Q psy845 596 -------------C--HD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK---- 652 (677)
Q Consensus 596 -------------~--sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~---- 652 (677)
. .+ |+-.+.++.+++.+...+ ...+||+||+.|+-|||||..+|+++.
T Consensus 106 ~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~---------~A~~LsyG~qR~LEIArALa~~P~lLLLDEP 176 (250)
T COG0411 106 ARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADR---------PAGNLSYGQQRRLEIARALATQPKLLLLDEP 176 (250)
T ss_pred hhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcc---------hhhcCChhHhHHHHHHHHHhcCCCEEEecCc
Confidence 1 12 223445556666554322 467999999999999999999999771
Q ss_pred -------------------c--cccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 653 -------------------K--SGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 653 -------------------~--~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
. .+.|| -| -++ -||||+||+.|+++
T Consensus 177 aAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~I 229 (250)
T COG0411 177 AAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVI 229 (250)
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCc
Confidence 1 23553 22 233 39999999999975
No 296
>KOG0060|consensus
Probab=99.95 E-value=3.8e-25 Score=244.77 Aligned_cols=375 Identities=20% Similarity=0.187 Sum_probs=234.4
Q ss_pred ccchhHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Q psy845 207 ALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITT-LYHLISKVFRIAVRELKRMENVS 285 (677)
Q Consensus 207 ~~~~~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~lal~~l~i~~-l~~~i~~~~~~~~~~~~r~~~~~ 285 (677)
|+|..|+|.|++...+-..+.+ ..++...+.++....-++...+|...+.+..-. +...+.+.+++..-+..-+++..
T Consensus 182 dNPDQrltqDv~kf~~~l~sl~-s~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qekl 260 (659)
T KOG0060|consen 182 DNPDQRLTQDVEKFCRQLSSLY-SNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKL 260 (659)
T ss_pred CChHHHHhHHHHHHHHHHHHHH-HhhhccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHh
Confidence 4678999999988776555433 335555555555554555555554433332222 23334444444443333334444
Q ss_pred cccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH---
Q psy845 286 RSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIAMAIITGLT----VA--- 358 (677)
Q Consensus 286 ~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~g~~----lv--- 358 (677)
.++..-.-.+...+.+.|--|+.++.+.++.+...+...+.....-....|+....+++.- ..-+.++. -+
T Consensus 261 EGdfRy~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Y--lg~ilsy~vi~~p~Fs~ 338 (659)
T KOG0060|consen 261 EGDFRYKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDY--LGGILSYVVIAIPFFSG 338 (659)
T ss_pred hcchhhheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhheeeEEeeeeecc
Confidence 4555555556667888888899888877777666666554443333333344443333332 11111111 11
Q ss_pred -HhcCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---cCCCCCCC-----CCCc----c
Q psy845 359 -FHGSVSPALAGLALTYAS----HVTGLLQFTVRVFVETELNFLAVERINNCSKK---LVPEGRGP-----ITSE----F 421 (677)
Q Consensus 359 -~~G~ls~g~l~~~l~~~~----~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~---~~~e~~~~-----~~~~----~ 421 (677)
..+.++++.+...+.... .+.+.+..++....++..-..-..||.|+.+. ......+. ..++ .
T Consensus 339 h~y~~~s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l 418 (659)
T KOG0060|consen 339 HVYDDLSPAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGL 418 (659)
T ss_pred cccCCcCHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhcc
Confidence 234677776655444332 33344444444444555555667888877531 11100000 0000 0
Q ss_pred ccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEe
Q psy845 422 GQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 501 (677)
Q Consensus 422 ~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~d 501 (677)
+.....+..+|.+..|+|++|++.=|++.+...+|+||+|+.|+.+-|.||||||||+|++.+.|+|+-.+|++.--..
T Consensus 419 ~~~~G~~~~~~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~- 497 (659)
T KOG0060|consen 419 SLPPGSGKAEPADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTD- 497 (659)
T ss_pred CCCCCCcccccccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEeccc-
Confidence 0000012233445689999999999886555678899999999999999999999999999999999999998864211
Q ss_pred cccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc
Q psy845 502 IASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL 581 (677)
Q Consensus 502 I~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L 581 (677)
|. + +.+-|+||.|+.
T Consensus 498 -------------------------------------------------~~-----------~-----~~lfflPQrPYm 512 (659)
T KOG0060|consen 498 -------------------------------------------------GG-----------P-----KDLFFLPQRPYM 512 (659)
T ss_pred -------------------------------------------------CC-----------C-----CceEEecCCCCc
Confidence 00 1 345678888888
Q ss_pred cccchhhccccC--------CCCChHHHHHHHHHccchhhHhhhhcccCCCC---CCCCCChHHHHHHHHHHHHhccchh
Q psy845 582 FNGTIRYNLDPF--------GRCHDTELWDALEKSHLKSKVVTMRSKLDSDV---QGDQLSLGEKQLLCLARALLRKTKK 650 (677)
Q Consensus 582 FsgTIrENI~~~--------~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v---~G~~LSGGQRQRIaIARALLr~p~I 650 (677)
-.||+||-+-+- +.++|++|.+.++.+++.+.++. .+|+|+.+ -...||+||+||+|.||-++.+|+.
T Consensus 513 t~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r-~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~ 591 (659)
T KOG0060|consen 513 TLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLER-EGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKF 591 (659)
T ss_pred cccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHH-hCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCce
Confidence 888888887421 24789999999999999886655 58999877 4789999999999999999999996
Q ss_pred h
Q psy845 651 K 651 (677)
Q Consensus 651 L 651 (677)
-
T Consensus 592 A 592 (659)
T KOG0060|consen 592 A 592 (659)
T ss_pred E
Confidence 5
No 297
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.94 E-value=1.5e-27 Score=231.17 Aligned_cols=178 Identities=26% Similarity=0.346 Sum_probs=134.5
Q ss_pred cEEEEeeeEEeCCC--CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 436 TIKFKNVSLRYRDN--WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 436 ~I~fknVsFsY~~~--~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
-|+.++++..-++. +-.+|++|++.|++||.+|||||||||||||+-+++|+-+|++|+|.+.|+++.+++.+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd----- 80 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDED----- 80 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHH-----
Confidence 47788888877654 34689999999999999999999999999999999999999999999999999888422
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHh-hhccccccccccc-ccchhhccc
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR-SRLSVIPQDPVLF-NGTIRYNLD 591 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR-~~I~~V~Qd~~LF-sgTIrENI~ 591 (677)
....+| +++|+|+|...|. +.|--||..
T Consensus 81 --------------------------------------------------~rA~~R~~~vGfVFQSF~Lip~ltAlENV~ 110 (228)
T COG4181 81 --------------------------------------------------ARAALRARHVGFVFQSFHLIPNLTALENVA 110 (228)
T ss_pred --------------------------------------------------HHHHhhccceeEEEEeeeccccchhhhhcc
Confidence 333443 4777777777775 778899985
Q ss_pred c----CCCCChHH---HHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc------------
Q psy845 592 P----FGRCHDTE---LWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK------------ 652 (677)
Q Consensus 592 ~----~~~~sdee---I~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~------------ 652 (677)
. -++.+.+. -.+.++.+|+.+-+.. ...+|||||+||+|||||+.-.|+++.
T Consensus 111 lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~H---------yP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~T 181 (228)
T COG4181 111 LPLELRGESSADSRAGAKALLEAVGLGKRLTH---------YPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRAT 181 (228)
T ss_pred chhhhcCCccccHHHHHHHHHHHhCccccccc---------CccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhH
Confidence 2 12222222 3444556655443322 467999999999999999999999881
Q ss_pred -------------ccccc-e--ec---ccccccEEEEEeCCeeC
Q psy845 653 -------------KSGVN-I--TR---PVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 653 -------------~~~~T-I--Ls---TI~~aDrIlVLd~GrIV 677 (677)
-.|.| | +| ....|||++-|++|+++
T Consensus 182 g~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~ 225 (228)
T COG4181 182 GDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLV 225 (228)
T ss_pred HHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceec
Confidence 12334 2 22 24579999999999985
No 298
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=1.7e-27 Score=245.63 Aligned_cols=146 Identities=29% Similarity=0.388 Sum_probs=118.4
Q ss_pred cEEEEeeeEEeCCCC-------CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHH
Q psy845 436 TIKFKNVSLRYRDNW-------PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELE 508 (677)
Q Consensus 436 ~I~fknVsFsY~~~~-------~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~ 508 (677)
-++++|++..|+... ..+++||||+|++||++||||+|||||||+.++++|+++|++|+|.++|.|+..+
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~--- 80 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKL--- 80 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhc---
Confidence 378899999996432 3689999999999999999999999999999999999999999999999998777
Q ss_pred HhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhh
Q psy845 509 TLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRY 588 (677)
Q Consensus 509 ~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrE 588 (677)
+
T Consensus 81 -------------------------------------------------------~------------------------ 81 (268)
T COG4608 81 -------------------------------------------------------S------------------------ 81 (268)
T ss_pred -------------------------------------------------------c------------------------
Confidence 1
Q ss_pred ccccCCCCChHHHHHHHHHccchh-hHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc---------------
Q psy845 589 NLDPFGRCHDTELWDALEKSHLKS-KVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK--------------- 652 (677)
Q Consensus 589 NI~~~~~~sdeeI~~Al~~a~l~e-fI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~--------------- 652 (677)
+...++++.+.++.+|+.+ +..+ ...+||||||||++|||||.-||+++.
T Consensus 82 -----~~~~~~~v~elL~~Vgl~~~~~~r---------yPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaq 147 (268)
T COG4608 82 -----KEERRERVLELLEKVGLPEEFLYR---------YPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQ 147 (268)
T ss_pred -----hhHHHHHHHHHHHHhCCCHHHhhc---------CCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHH
Confidence 1123466888999998765 3322 457999999999999999999998651
Q ss_pred ----------ccccc---e---eccccc-ccEEEEEeCCeeC
Q psy845 653 ----------KSGVN---I---TRPVTS-CDKVLVMDNGQAL 677 (677)
Q Consensus 653 ----------~~~~T---I---LsTI~~-aDrIlVLd~GrIV 677 (677)
..+.| | ++.+++ ||||.||..|+||
T Consensus 148 IlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iV 189 (268)
T COG4608 148 ILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIV 189 (268)
T ss_pred HHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCcee
Confidence 12333 3 344444 8999999999986
No 299
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.94 E-value=3.2e-27 Score=295.37 Aligned_cols=175 Identities=23% Similarity=0.329 Sum_probs=140.4
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
..|+++|++++|+++++.+++|+||++++||++||+||||||||||+++|+|+.+|++|+|.++|.|++.
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~---------- 996 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET---------- 996 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc----------
Confidence 4699999999996433569999999999999999999999999999999999999999999999998753
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~ 593 (677)
+.+..|+++|++||++.+|+ .|++||+.+.
T Consensus 997 -------------------------------------------------~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~ 1027 (2272)
T TIGR01257 997 -------------------------------------------------NLDAVRQSLGMCPQHNILFHHLTVAEHILFY 1027 (2272)
T ss_pred -------------------------------------------------hHHHHhhcEEEEecCCcCCCCCCHHHHHHHH
Confidence 34467888999999998885 6999999653
Q ss_pred C---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 594 G---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 594 ~---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
. ..+ ++++.+.++..++.+...+ ...+||||||||++||||++.+|+++
T Consensus 1028 ~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~---------~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~ 1098 (2272)
T TIGR01257 1028 AQLKGRSWEEAQLEMEAMLEDTGLHHKRNE---------EAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRR 1098 (2272)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCchhhcC---------ChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHH
Confidence 2 122 2346667777776544322 46799999999999999999999976
Q ss_pred --------cccccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 --------KKSGVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~~~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
..+|+|| .|.. .-||||++|++|+++
T Consensus 1099 ~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~ 1139 (2272)
T TIGR01257 1099 SIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLY 1139 (2272)
T ss_pred HHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 1246673 3332 249999999999974
No 300
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.94 E-value=2.1e-27 Score=240.30 Aligned_cols=159 Identities=28% Similarity=0.380 Sum_probs=115.9
Q ss_pred cccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC----CccEEEECCEecccccHHHhhhhcccccCCcccccccc
Q psy845 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL----SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV 528 (677)
Q Consensus 453 VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p----~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~ 528 (677)
+++|+||++++||++||+||||||||||+++|+|+++| ++|+|.+||.++.+.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~----------------------- 57 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL----------------------- 57 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh-----------------------
Confidence 58999999999999999999999999999999999999 899999999987543
Q ss_pred ccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccc-ccc--cchhhcccc----CCCC---Ch
Q psy845 529 GRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV-LFN--GTIRYNLDP----FGRC---HD 598 (677)
Q Consensus 529 ~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~-LFs--gTIrENI~~----~~~~---sd 598 (677)
+..+++++|++|++. .|. .|++||+.. .+.. .+
T Consensus 58 -------------------------------------~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 100 (230)
T TIGR02770 58 -------------------------------------SIRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQAR 100 (230)
T ss_pred -------------------------------------hhhhheeEEEecCchhhcCcccCHHHHHHHHHHHcCccHHHHH
Confidence 112346777777764 232 477777632 1111 13
Q ss_pred HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------------cc-
Q psy845 599 TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------------KK- 653 (677)
Q Consensus 599 eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------------~~- 653 (677)
+++.++++..++.+. . +-.+. .+.+||||||||++||||++++|+++ ..
T Consensus 101 ~~~~~~l~~~~l~~~-~---~~~~~--~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~ 174 (230)
T TIGR02770 101 ALILEALEAVGLPDP-E---EVLKK--YPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQL 174 (230)
T ss_pred HHHHHHHHHcCCCch-H---HHHhC--ChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHh
Confidence 446777777777531 0 00111 46799999999999999999999976 11
Q ss_pred cccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 654 SGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 654 ~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
.++|| .| .+ ..||||++|++|+++
T Consensus 175 ~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 205 (230)
T TIGR02770 175 FGTGILLITHDLGVVARIADEVAVMDDGRIV 205 (230)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 25663 22 23 349999999999974
No 301
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=3.7e-27 Score=227.85 Aligned_cols=165 Identities=31% Similarity=0.431 Sum_probs=132.8
Q ss_pred eCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccc
Q psy845 446 YRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 525 (677)
Q Consensus 446 Y~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~ 525 (677)
|...+.++|+|+||++++||.+||.||||||||||+|.++-+..|++|+++..|.|+..+
T Consensus 11 y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~-------------------- 70 (223)
T COG4619 11 YLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTL-------------------- 70 (223)
T ss_pred hhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCcccccc--------------------
Confidence 544445799999999999999999999999999999999999999999999999999888
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcccc-C---C-CCChHH
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDP-F---G-RCHDTE 600 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~-~---~-~~sdee 600 (677)
+++.+|++++|+-|.|-||-+||+||+-+ . + +.+...
T Consensus 71 --------------------------------------~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~rr~dr~a 112 (223)
T COG4619 71 --------------------------------------KPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAA 112 (223)
T ss_pred --------------------------------------ChHHHHHHHHHHHcCccccccchhhccccchHHhccCCChHH
Confidence 88999999999999999999999999953 2 1 223333
Q ss_pred HHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhcccccc-----------------------
Q psy845 601 LWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKKKSGVN----------------------- 657 (677)
Q Consensus 601 I~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~~~~~T----------------------- 657 (677)
-.+.++.+++.+.+.+ . +..+||||||||+||+|-|---|+|+.+...|
T Consensus 113 a~~llar~~l~~~~L~------k--~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~ 184 (223)
T COG4619 113 ALDLLARFALPDSILT------K--NITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQN 184 (223)
T ss_pred HHHHHHHcCCchhhhc------c--hhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhc
Confidence 4455666666554322 1 56899999999999999999999988322211
Q ss_pred -----eec----ccccccEEEEEeCCee
Q psy845 658 -----ITR----PVTSCDKVLVMDNGQA 676 (677)
Q Consensus 658 -----ILs----TI~~aDrIlVLd~GrI 676 (677)
|+| .+++|||++-+..|++
T Consensus 185 vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 185 VAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred eEEEEEecChHHHhhhhheEEEeccCcc
Confidence 122 3677999999998864
No 302
>PLN03211 ABC transporter G-25; Provisional
Probab=99.94 E-value=1.2e-26 Score=268.52 Aligned_cols=158 Identities=23% Similarity=0.300 Sum_probs=122.1
Q ss_pred CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCC--ccEEEECCEecccccHHHhhhhcccccCCcccccccc
Q psy845 451 PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS--SGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV 528 (677)
Q Consensus 451 ~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~--~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~ 528 (677)
+.+|+|+|+++++||++||+||||||||||+++|+|..+|+ +|+|.+||+++.+
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~------------------------ 136 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK------------------------ 136 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch------------------------
Confidence 46999999999999999999999999999999999999885 8999999987521
Q ss_pred ccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC------CCChHH-
Q psy845 529 GRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG------RCHDTE- 600 (677)
Q Consensus 529 ~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~------~~sdee- 600 (677)
+.+++++||+|++.++. .|++||+.+.. +.+++|
T Consensus 137 --------------------------------------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~ 178 (659)
T PLN03211 137 --------------------------------------QILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEK 178 (659)
T ss_pred --------------------------------------hhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHH
Confidence 23456889999988884 69999996421 223333
Q ss_pred ---HHHHHHHccchhhHhhhhcccCCCC---CCCCCChHHHHHHHHHHHHhccchhh-----------------------
Q psy845 601 ---LWDALEKSHLKSKVVTMRSKLDSDV---QGDQLSLGEKQLLCLARALLRKTKKK----------------------- 651 (677)
Q Consensus 601 ---I~~Al~~a~l~efI~~LP~GldT~v---~G~~LSGGQRQRIaIARALLr~p~IL----------------------- 651 (677)
+.+.++..|+ ++..||.+ .+.+||||||||++||||++++|+++
T Consensus 179 ~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~ 251 (659)
T PLN03211 179 ILVAESVISELGL-------TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGS 251 (659)
T ss_pred HHHHHHHHHHcCC-------hhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHH
Confidence 3334444443 33457766 35789999999999999999999976
Q ss_pred -cccccce---ecc-----cccccEEEEEeCCeeC
Q psy845 652 -KKSGVNI---TRP-----VTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -~~~~~TI---LsT-----I~~aDrIlVLd~GrIV 677 (677)
..+|+|| .|. .+.||+|++|++|+++
T Consensus 252 l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv 286 (659)
T PLN03211 252 LAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCL 286 (659)
T ss_pred HHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEE
Confidence 1257773 332 2448999999999974
No 303
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.94 E-value=1.6e-27 Score=273.93 Aligned_cols=160 Identities=26% Similarity=0.339 Sum_probs=125.0
Q ss_pred CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCC---ccEEEECCEecccccHHHhhhhcccccCCcccccc
Q psy845 450 WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS---SGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG 526 (677)
Q Consensus 450 ~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~---~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~ 526 (677)
++++|+|+|+++++||.+||+||||||||||+++|+|..+|. +|+|.+||.+++
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~----------------------- 93 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID----------------------- 93 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC-----------------------
Confidence 457999999999999999999999999999999999999885 799999998763
Q ss_pred ccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC------CCChH
Q psy845 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG------RCHDT 599 (677)
Q Consensus 527 ~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~------~~sde 599 (677)
.+++|+.++||+||+.++ +.|++|||.+.. +.+.+
T Consensus 94 --------------------------------------~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~ 135 (617)
T TIGR00955 94 --------------------------------------AKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKK 135 (617)
T ss_pred --------------------------------------HHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHH
Confidence 235688899999999988 569999996432 12222
Q ss_pred H----HHHHHHHccchhhHhhhhcccCCCCC----CCCCChHHHHHHHHHHHHhccchhh--------------------
Q psy845 600 E----LWDALEKSHLKSKVVTMRSKLDSDVQ----GDQLSLGEKQLLCLARALLRKTKKK-------------------- 651 (677)
Q Consensus 600 e----I~~Al~~a~l~efI~~LP~GldT~v~----G~~LSGGQRQRIaIARALLr~p~IL-------------------- 651 (677)
+ +.++++..+ +++..||.++ +..||||||||++||||++++|+++
T Consensus 136 ~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~ 208 (617)
T TIGR00955 136 EKRERVDEVLQALG-------LRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQV 208 (617)
T ss_pred HHHHHHHHHHHHcC-------chhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHH
Confidence 2 333333333 3456788883 3689999999999999999999976
Q ss_pred ----cccccce---ecc-----cccccEEEEEeCCeeC
Q psy845 652 ----KKSGVNI---TRP-----VTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----~~~~~TI---LsT-----I~~aDrIlVLd~GrIV 677 (677)
..+|+|+ .|. .+.||+|++|++|+++
T Consensus 209 L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v 246 (617)
T TIGR00955 209 LKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVA 246 (617)
T ss_pred HHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEE
Confidence 1246773 222 3469999999999974
No 304
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.94 E-value=5.8e-27 Score=236.89 Aligned_cols=161 Identities=25% Similarity=0.286 Sum_probs=117.8
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
+.++|++.+|++. ++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||+++...
T Consensus 23 l~~~~~~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~----------- 89 (224)
T cd03220 23 LGILGRKGEVGEF--WALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL----------- 89 (224)
T ss_pred hhhhhhhhhcCCe--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----------
Confidence 6788889999753 699999999999999999999999999999999999999999999999875321
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC--
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG-- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~-- 594 (677)
. ...+ +..+.|++||+....
T Consensus 90 -----------------------------------------------~-----~~~~------~~~~~tv~enl~~~~~~ 111 (224)
T cd03220 90 -----------------------------------------------G-----LGGG------FNPELTGRENIYLNGRL 111 (224)
T ss_pred -----------------------------------------------c-----cccc------CCCCCcHHHHHHHHHHH
Confidence 0 0011 112568888885321
Q ss_pred -CCChH----HHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------
Q psy845 595 -RCHDT----ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------ 651 (677)
Q Consensus 595 -~~sde----eI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------ 651 (677)
..+.+ ++.++++..++.+. .++ ...+||||||||++||||++++|+++
T Consensus 112 ~~~~~~~~~~~~~~~l~~~~l~~~-------~~~--~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~ 182 (224)
T cd03220 112 LGLSRKEIDEKIDEIIEFSELGDF-------IDL--PVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQ 182 (224)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhh-------hhC--ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 11222 34445555554433 233 34689999999999999999999876
Q ss_pred ------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 ------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+++|| .|. + +.||+|++|++|+++
T Consensus 183 ~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 221 (224)
T cd03220 183 RRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIR 221 (224)
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 1234563 222 3 349999999999974
No 305
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.7e-26 Score=242.76 Aligned_cols=183 Identities=30% Similarity=0.407 Sum_probs=127.0
Q ss_pred EEEEeeeEEeCCCC--CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC-C----CccEEEECCEecccccHHH
Q psy845 437 IKFKNVSLRYRDNW--PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE-L----SSGQIKIDDFDIASVELET 509 (677)
Q Consensus 437 I~fknVsFsY~~~~--~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~-p----~~G~I~IdG~dI~~l~~~~ 509 (677)
++++|++.+|+.+. ..+++||||++++||++||||+|||||||+.+.++|+.+ | .+|+|.++|.|+-+++.++
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899999997542 469999999999999999999999999999999999998 3 5789999999998885443
Q ss_pred hh----hhcccccCCccc-cccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc
Q psy845 510 LR----SRLSVIPQDPVL-FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG 584 (677)
Q Consensus 510 ~~----~~i~~v~q~~~l-f~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg 584 (677)
.+ ++|++|||||.- +| +.....++
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLn--------------------------------------Pv~~Ig~Q------------- 110 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLN--------------------------------------PVMTIGDQ------------- 110 (316)
T ss_pred HHhhcCceEEEEEcCchhhcC--------------------------------------ChhhHHHH-------------
Confidence 22 255555555431 11 11111111
Q ss_pred chhhccccCCCC-C----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc-------
Q psy845 585 TIRYNLDPFGRC-H----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK------- 652 (677)
Q Consensus 585 TIrENI~~~~~~-s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~------- 652 (677)
+.|-+...... + .++..++++.+++.+--+.+ +. ...+||||||||+.||-|++.+|+++.
T Consensus 111 -i~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~----~~--YPhelSGGMrQRV~IAmala~~P~LlIADEPTTA 183 (316)
T COG0444 111 -IAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRL----KS--YPHELSGGMRQRVMIAMALALNPKLLIADEPTTA 183 (316)
T ss_pred -HHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHH----hh--CCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcch
Confidence 12222221111 1 23567788888887531111 11 467999999999999999999999761
Q ss_pred ------------------ccccc---eeccc----ccccEEEEEeCCeeC
Q psy845 653 ------------------KSGVN---ITRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 653 ------------------~~~~T---ILsTI----~~aDrIlVLd~GrIV 677 (677)
..+.+ |+|.+ +-||||+||.+|+||
T Consensus 184 LDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 184 LDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 12333 24432 359999999999986
No 306
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.94 E-value=1.3e-26 Score=289.83 Aligned_cols=176 Identities=17% Similarity=0.226 Sum_probs=139.1
Q ss_pred CccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 434 ~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
..-|+++|++++|+++...+++|+||+|++||++||+|||||||||++|+|+|+.+|++|+|.++|.++.+
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~--------- 2005 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT--------- 2005 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc---------
Confidence 34699999999997533469999999999999999999999999999999999999999999999998753
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhcccc
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDP 592 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~ 592 (677)
+.++.|++|||+||++.+++ .|++||+.+
T Consensus 2006 --------------------------------------------------~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l 2035 (2272)
T TIGR01257 2006 --------------------------------------------------NISDVHQNMGYCPQFDAIDDLLTGREHLYL 2035 (2272)
T ss_pred --------------------------------------------------hHHHHhhhEEEEeccccCCCCCCHHHHHHH
Confidence 23356778888888888874 699999964
Q ss_pred CC---CCChH----HHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------------
Q psy845 593 FG---RCHDT----ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------------- 651 (677)
Q Consensus 593 ~~---~~sde----eI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------------- 651 (677)
.. ..+.+ .+.++++..++.++..+ ...+||||||||+++|||++.+|+++
T Consensus 2036 ~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk---------~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr 2106 (2272)
T TIGR01257 2036 YARLRGVPAEEIEKVANWSIQSLGLSLYADR---------LAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQAR 2106 (2272)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCHHHhcC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence 21 12222 34456777777655332 35689999999999999999999976
Q ss_pred ----------cccccce---ecccc----cccEEEEEeCCeeC
Q psy845 652 ----------KKSGVNI---TRPVT----SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----------~~~~~TI---LsTI~----~aDrIlVLd~GrIV 677 (677)
..+|+|| .|.+. -||||++|++|+++
T Consensus 2107 ~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~ 2149 (2272)
T TIGR01257 2107 RMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQ 2149 (2272)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 1246673 33332 39999999999974
No 307
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=2.3e-26 Score=229.31 Aligned_cols=172 Identities=27% Similarity=0.344 Sum_probs=135.6
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+.+|+|++-.++ .+|+|+|++++|||..||+||||||||||+|.|+|...|++|++.+||.++.++
T Consensus 2 i~a~nls~~~~Gr--~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~----------- 68 (259)
T COG4559 2 IRAENLSYSLAGR--RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSW----------- 68 (259)
T ss_pred eeeeeeEEEeecc--eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhC-----------
Confidence 6788999887654 599999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc-cccchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-FNGTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L-FsgTIrENI~~~~- 594 (677)
+.+++-++-++.||+..| |.-|++|=+.++.
T Consensus 69 -----------------------------------------------~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~ 101 (259)
T COG4559 69 -----------------------------------------------PPEELARHRAVLPQNSSLAFPFTVQEVVQMGRI 101 (259)
T ss_pred -----------------------------------------------CHHHHHHHhhhcccCcccccceEHHHHHHhccc
Confidence 666777777777887777 7889999885442
Q ss_pred ------CCChHH--HHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccch------hh---------
Q psy845 595 ------RCHDTE--LWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTK------KK--------- 651 (677)
Q Consensus 595 ------~~sdee--I~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~------IL--------- 651 (677)
+..+++ ..+++..+++..+-.+ .-..|||||+||+.+||.|.+-.+ .+
T Consensus 102 p~~~g~~~~e~~~i~~~ala~~d~~~la~R---------~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaL 172 (259)
T COG4559 102 PHRSGREPEEDERIAAQALAATDLSGLAGR---------DYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSAL 172 (259)
T ss_pred ccccCCCchhhHHHHHHHHHHcChhhhhcc---------chhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCcccc
Confidence 222344 5668888888765433 235899999999999999976432 22
Q ss_pred ---------------cccccc---eecc----cccccEEEEEeCCeeC
Q psy845 652 ---------------KKSGVN---ITRP----VTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------------~~~~~T---ILsT----I~~aDrIlVLd~GrIV 677 (677)
..++.. |+|. .+.||||++|.+||++
T Consensus 173 Di~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~ 220 (259)
T COG4559 173 DIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVI 220 (259)
T ss_pred chHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEe
Confidence 122322 3443 3569999999999985
No 308
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=1.3e-26 Score=241.97 Aligned_cols=161 Identities=30% Similarity=0.366 Sum_probs=131.9
Q ss_pred cccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCC
Q psy845 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTG 532 (677)
Q Consensus 453 VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~ 532 (677)
-++|+||+|+.||+..|.|-||||||||++++.|+++|+.|+|++||.|+..++..
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~------------------------ 98 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAA------------------------ 98 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHH------------------------
Confidence 37899999999999999999999999999999999999999999999999888433
Q ss_pred CCCchhHHHHHHhhhhccccccccccchhhhhHHHH-hhhccccccccccc-ccchhhccccCCC---CCh----HHHHH
Q psy845 533 AGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL-RSRLSVIPQDPVLF-NGTIRYNLDPFGR---CHD----TELWD 603 (677)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~L-R~~I~~V~Qd~~LF-sgTIrENI~~~~~---~sd----eeI~~ 603 (677)
++.++ |+++++|+|..-|+ +.|+.||..++-+ .+. +...+
T Consensus 99 -------------------------------~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~ 147 (386)
T COG4175 99 -------------------------------ELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALE 147 (386)
T ss_pred -------------------------------HHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHH
Confidence 23333 45788888888888 6899999987632 233 33567
Q ss_pred HHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc-------------------------ccccce
Q psy845 604 ALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK-------------------------KSGVNI 658 (677)
Q Consensus 604 Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~-------------------------~~~~TI 658 (677)
+++.+|+++|-.+.| .+||||++||+.|||||..||+|+. .-.+||
T Consensus 148 ~l~~VgL~~~~~~yp---------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTI 218 (386)
T COG4175 148 ALELVGLEGYADKYP---------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTI 218 (386)
T ss_pred HHHHcCchhhhhcCc---------ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeE
Confidence 889999998876644 6899999999999999999999871 224563
Q ss_pred ---ecc----cccccEEEEEeCCeeC
Q psy845 659 ---TRP----VTSCDKVLVMDNGQAL 677 (677)
Q Consensus 659 ---LsT----I~~aDrIlVLd~GrIV 677 (677)
.|. ++-.|||..|++|+||
T Consensus 219 vFitHDLdEAlriG~rIaimkdG~iv 244 (386)
T COG4175 219 VFITHDLDEALRIGDRIAIMKDGEIV 244 (386)
T ss_pred EEEecCHHHHHhccceEEEecCCeEE
Confidence 443 4557999999999985
No 309
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.93 E-value=4.5e-26 Score=252.69 Aligned_cols=174 Identities=24% Similarity=0.340 Sum_probs=136.9
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-++++|++.+|++- ++|+|+||++++||..|++|.||||||||+|.|+|.|+|++|+|.+||.+..-.+
T Consensus 8 ll~~~~i~K~FggV--~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~s--------- 76 (500)
T COG1129 8 LLELRGISKSFGGV--KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSS--------- 76 (500)
T ss_pred eeeeecceEEcCCc--eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCC---------
Confidence 48899999999864 6999999999999999999999999999999999999999999999999876541
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~ 594 (677)
+.+..+..|++|.||..|+ +.||.|||-+++
T Consensus 77 ------------------------------------------------p~~A~~~GI~~V~QEl~L~p~LsVaeNifLgr 108 (500)
T COG1129 77 ------------------------------------------------PRDALAAGIATVHQELSLVPNLSVAENIFLGR 108 (500)
T ss_pred ------------------------------------------------HHHHHhCCcEEEeechhccCCccHHHHhhccc
Confidence 6667778899999999998 679999996543
Q ss_pred C-------CChHHHHH----HHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------
Q psy845 595 R-------CHDTELWD----ALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------ 651 (677)
Q Consensus 595 ~-------~sdeeI~~----Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------ 651 (677)
+ .+..++.+ +++..++. ...++ .-.+||+||||.++||||+.++++++
T Consensus 109 e~~~~~g~id~~~m~~~A~~~l~~lg~~-------~~~~~--~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~ 179 (500)
T COG1129 109 EPTRRFGLIDRKAMRRRARELLARLGLD-------IDPDT--LVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVK 179 (500)
T ss_pred ccccCCCccCHHHHHHHHHHHHHHcCCC-------CChhh--hhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 2 22233333 33333332 11344 45799999999999999999999876
Q ss_pred ------------cccccce---ecc----cccccEEEEEeCCeeC
Q psy845 652 ------------KKSGVNI---TRP----VTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~~~TI---LsT----I~~aDrIlVLd~GrIV 677 (677)
..+|.+| .|- .+-||||.||.||+.|
T Consensus 180 E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v 224 (500)
T COG1129 180 ETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVV 224 (500)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEe
Confidence 1245552 222 2349999999999975
No 310
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.93 E-value=3.2e-26 Score=282.90 Aligned_cols=173 Identities=21% Similarity=0.358 Sum_probs=134.9
Q ss_pred cEEEEeeeEEeC--CCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC---CCccEEEECCEecccccHHHh
Q psy845 436 TIKFKNVSLRYR--DNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE---LSSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 436 ~I~fknVsFsY~--~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~---p~~G~I~IdG~dI~~l~~~~~ 510 (677)
.++++||+++|+ ++++.+|+|+|+++++||++||+||||||||||+++|+|..+ |++|+|.+||+++++
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~------ 832 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS------ 832 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh------
Confidence 479999999996 233579999999999999999999999999999999999998 788999999987621
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccc-ccccchhhc
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV-LFNGTIRYN 589 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~-LFsgTIrEN 589 (677)
++|+.+|||+|++. +++.|++||
T Consensus 833 --------------------------------------------------------~~~~~i~yv~Q~~~~~~~~Tv~E~ 856 (1394)
T TIGR00956 833 --------------------------------------------------------SFQRSIGYVQQQDLHLPTSTVRES 856 (1394)
T ss_pred --------------------------------------------------------hhhcceeeecccccCCCCCCHHHH
Confidence 35778888888765 457899999
Q ss_pred cccCC------CCChH----HHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccch-hh-----
Q psy845 590 LDPFG------RCHDT----ELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTK-KK----- 651 (677)
Q Consensus 590 I~~~~------~~sde----eI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~-IL----- 651 (677)
+++.. +.+++ ++.++++..++.+. .|+.+ .|.+||||||||++|||||+++|+ ++
T Consensus 857 L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~-------~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEP 929 (1394)
T TIGR00956 857 LRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESY-------ADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEP 929 (1394)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh-------CCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCC
Confidence 97421 22333 35566777666443 56666 466899999999999999999997 54
Q ss_pred -------------------cccccce---ecc-----cccccEEEEEeCC-eeC
Q psy845 652 -------------------KKSGVNI---TRP-----VTSCDKVLVMDNG-QAL 677 (677)
Q Consensus 652 -------------------~~~~~TI---LsT-----I~~aDrIlVLd~G-rIV 677 (677)
..+|+|| .|. .+.|||+++|++| +++
T Consensus 930 TsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv 983 (1394)
T TIGR00956 930 TSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTV 983 (1394)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEE
Confidence 1356773 222 2468999999997 874
No 311
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.93 E-value=1.5e-26 Score=233.60 Aligned_cols=146 Identities=25% Similarity=0.410 Sum_probs=110.1
Q ss_pred eEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchh
Q psy845 459 FRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSL 538 (677)
Q Consensus 459 l~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~ 538 (677)
|++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~---------------------------------- 46 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGK---------------------------------- 46 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchH----------------------------------
Confidence 5789999999999999999999999999999999999999976421
Q ss_pred HHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc---cccchhhccccCC---------C--CChHHHHHH
Q psy845 539 LVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL---FNGTIRYNLDPFG---------R--CHDTELWDA 604 (677)
Q Consensus 539 ~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L---FsgTIrENI~~~~---------~--~sdeeI~~A 604 (677)
.|++++|+||++.+ |+.|++||+.++. . ..++++.++
T Consensus 47 -----------------------------~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (223)
T TIGR03771 47 -----------------------------GWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDA 97 (223)
T ss_pred -----------------------------hhCcEEEecccccccCCCCccHHHHHHhccccccccccCCcHHHHHHHHHH
Confidence 24567777777665 3578888875321 0 122456778
Q ss_pred HHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------------cccccce--
Q psy845 605 LEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------------KKSGVNI-- 658 (677)
Q Consensus 605 l~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------------~~~~~TI-- 658 (677)
++..++.++... ...+||||||||++||||++++|+++ ..+++|+
T Consensus 98 l~~~~l~~~~~~---------~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii 168 (223)
T TIGR03771 98 LRRVGLTELADR---------PVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILM 168 (223)
T ss_pred HHHhCCchhhcC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 888887654322 34679999999999999999999976 1235662
Q ss_pred -ec---cc-ccccEEEEEeCCeeC
Q psy845 659 -TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 659 -Ls---TI-~~aDrIlVLd~GrIV 677 (677)
.| .+ +.||+|+++ +|+++
T Consensus 169 ~sH~~~~~~~~~d~i~~l-~G~i~ 191 (223)
T TIGR03771 169 TTHDLAQAMATCDRVVLL-NGRVI 191 (223)
T ss_pred EeCCHHHHHHhCCEEEEE-CCEEE
Confidence 22 23 349999999 79874
No 312
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.4e-26 Score=238.43 Aligned_cols=159 Identities=23% Similarity=0.297 Sum_probs=130.4
Q ss_pred ceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCC
Q psy845 456 NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGK 535 (677)
Q Consensus 456 nISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~ 535 (677)
++||+.+....+||-|+||||||||+|+++|+..|++|+|.+||.-+.+-+
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~----------------------------- 66 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAE----------------------------- 66 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeeccc-----------------------------
Confidence 568888886799999999999999999999999999999999998876541
Q ss_pred chhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCCC-CChHHHHHHHHHccchhh
Q psy845 536 SSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFGR-CHDTELWDALEKSHLKSK 613 (677)
Q Consensus 536 ~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~~-~sdeeI~~Al~~a~l~ef 613 (677)
++....--|++||||+||.-|| +-|+|-|++|+.. .+.++..++.+..|+...
T Consensus 67 -------------------------k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hL 121 (352)
T COG4148 67 -------------------------KGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHL 121 (352)
T ss_pred -------------------------CCcccChhhheeeeEeeccccccceEEecchhhhhcccchHhHHHHHHHhCcHHH
Confidence 1114445688999999999999 6899999999764 446688889999999988
Q ss_pred HhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc----------------------ccccc---e---eccc---
Q psy845 614 VVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK----------------------KSGVN---I---TRPV--- 662 (677)
Q Consensus 614 I~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~----------------------~~~~T---I---LsTI--- 662 (677)
+++.| ..||||||||+||+|||+.+|+++. ..+.+ | .|.+
T Consensus 122 L~R~P---------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev 192 (352)
T COG4148 122 LDRYP---------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEV 192 (352)
T ss_pred HhhCC---------CccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHH
Confidence 88765 5899999999999999999999771 11112 2 3333
Q ss_pred -ccccEEEEEeCCeeC
Q psy845 663 -TSCDKVLVMDNGQAL 677 (677)
Q Consensus 663 -~~aDrIlVLd~GrIV 677 (677)
+-||+|+||+|||+.
T Consensus 193 ~RLAd~vV~le~GkV~ 208 (352)
T COG4148 193 LRLADRVVVLENGKVK 208 (352)
T ss_pred HhhhheEEEecCCeEE
Confidence 459999999999973
No 313
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=6.9e-26 Score=255.65 Aligned_cols=193 Identities=20% Similarity=0.275 Sum_probs=124.5
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+++|++++|++. ++++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|. +++|+
T Consensus 2 l~i~~ls~~~~~~--~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~ 68 (530)
T PRK15064 2 LSTANITMQFGAK--PLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLGK 68 (530)
T ss_pred EEEEEEEEEeCCc--EeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEE
Confidence 6899999999753 6999999999999999999999999999999999999999999999872 35788
Q ss_pred ccCCcccccc-ccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc---ccchhhcccc
Q psy845 517 IPQDPVLFNG-IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF---NGTIRYNLDP 592 (677)
Q Consensus 517 v~q~~~lf~~-~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF---sgTIrENI~~ 592 (677)
++|++.++++ ++.+|.. +... ...........+.+.+... ..++.++.+.
T Consensus 69 ~~q~~~~~~~~tv~e~l~---------------------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (530)
T PRK15064 69 LRQDQFAFEEFTVLDTVI---------------------MGHT-----ELWEVKQERDRIYALPEMSEEDGMKVADLEVK 122 (530)
T ss_pred EeccCCcCCCCcHHHHHH---------------------HhhH-----HHHHHHHHHHHHhcccccccchHHHHHHHHHH
Confidence 8988877653 3333300 0000 0000000000011111100 0122222211
Q ss_pred C----CCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 593 F----GRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 593 ~----~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
. +...++++.++++..++.+... +. ...+||||||||++||||++++|+++
T Consensus 123 ~~~~~~~~~~~~~~~~l~~~gl~~~~~------~~--~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l 194 (530)
T PRK15064 123 FAEMDGYTAEARAGELLLGVGIPEEQH------YG--LMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWL 194 (530)
T ss_pred HHhcCchhHHHHHHHHHHhCCCChhHh------cC--chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHH
Confidence 0 1111244666677776643221 11 34689999999999999999999976
Q ss_pred ----cccccce---ecc---c-ccccEEEEEeCCee
Q psy845 652 ----KKSGVNI---TRP---V-TSCDKVLVMDNGQA 676 (677)
Q Consensus 652 ----~~~~~TI---LsT---I-~~aDrIlVLd~GrI 676 (677)
...+.|| .|. + +-||+|++|++|++
T Consensus 195 ~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i 230 (530)
T PRK15064 195 EDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGEL 230 (530)
T ss_pred HHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEE
Confidence 1134563 332 2 34999999999997
No 314
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.93 E-value=4.1e-26 Score=236.03 Aligned_cols=151 Identities=23% Similarity=0.247 Sum_probs=102.3
Q ss_pred eeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCC
Q psy845 441 NVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQD 520 (677)
Q Consensus 441 nVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~ 520 (677)
||+++|++. .++|+|+| .+++||++||+||||||||||+++|+|+++|++|+|...+. ++..
T Consensus 5 ~~~~~y~~~-~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~-~~~~--------------- 66 (255)
T cd03236 5 EPVHRYGPN-SFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPD-WDEI--------------- 66 (255)
T ss_pred CcceeecCc-chhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccc-cchh---------------
Confidence 789999754 35999999 59999999999999999999999999999999999972210 0000
Q ss_pred ccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhh--hcccccccccccc----cchhhccccCC
Q psy845 521 PVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS--RLSVIPQDPVLFN----GTIRYNLDPFG 594 (677)
Q Consensus 521 ~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~--~I~~V~Qd~~LFs----gTIrENI~~~~ 594 (677)
.-.+||.++++...+..|. .+++++|++.++. +++++|+..
T Consensus 67 -------------------------------~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~-- 113 (255)
T cd03236 67 -------------------------------LDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKK-- 113 (255)
T ss_pred -------------------------------hhhccCchhhhhhHHhhhcccceeeecchhccCchHHHHHHHHHhch--
Confidence 0012223332222222222 3566666555544 555665532
Q ss_pred CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 595 RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 595 ~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
...+++..++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 114 ~~~~~~~~~~l~~~gl~~~~~~---------~~~~LS~G~~qrv~laral~~~p~il 161 (255)
T cd03236 114 KDERGKLDELVDQLELRHVLDR---------NIDQLSGGELQRVAIAAALARDADFY 161 (255)
T ss_pred hHHHHHHHHHHHHcCCchhhcC---------ChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 1123556777777776543322 45789999999999999999999876
No 315
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.93 E-value=1.2e-25 Score=255.33 Aligned_cols=63 Identities=25% Similarity=0.361 Sum_probs=58.3
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECC
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 499 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG 499 (677)
-|+++|++++|+++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+++
T Consensus 6 ~l~i~~l~~~y~~~-~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~ 68 (556)
T PRK11819 6 IYTMNRVSKVVPPK-KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP 68 (556)
T ss_pred EEEEeeEEEEeCCC-CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC
Confidence 48999999999732 4699999999999999999999999999999999999999999999874
No 316
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.93 E-value=1.2e-25 Score=255.16 Aligned_cols=63 Identities=25% Similarity=0.358 Sum_probs=58.1
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECC
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 499 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG 499 (677)
-++++|++++|+++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+++
T Consensus 4 ~i~~~nls~~~~~~-~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~ 66 (552)
T TIGR03719 4 IYTMNRVSKVVPPK-KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP 66 (552)
T ss_pred EEEEeeEEEecCCC-CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC
Confidence 48899999999733 3699999999999999999999999999999999999999999999864
No 317
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2e-25 Score=251.88 Aligned_cols=163 Identities=17% Similarity=0.305 Sum_probs=122.4
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
.-++++|++++|+++ ++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 318 ~~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~-- 382 (530)
T PRK15064 318 NALEVENLTKGFDNG--PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------A-- 382 (530)
T ss_pred ceEEEEeeEEeeCCc--eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------e--
Confidence 359999999999753 5999999999999999999999999999999999999999999998762 2
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccc--cc-ccchhhccc
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV--LF-NGTIRYNLD 591 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~--LF-sgTIrENI~ 591 (677)
+++|++|++. ++ +.|++||+.
T Consensus 383 --------------------------------------------------------~i~~~~q~~~~~~~~~~t~~~~~~ 406 (530)
T PRK15064 383 --------------------------------------------------------NIGYYAQDHAYDFENDLTLFDWMS 406 (530)
T ss_pred --------------------------------------------------------EEEEEcccccccCCCCCcHHHHHH
Confidence 3455555542 22 347777774
Q ss_pred cCC--CCChHHHHHHHHHccch-hhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc----------------
Q psy845 592 PFG--RCHDTELWDALEKSHLK-SKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK---------------- 652 (677)
Q Consensus 592 ~~~--~~sdeeI~~Al~~a~l~-efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~---------------- 652 (677)
... ...++++.++++..++. +.. +. ...+||||||||++||||++++|+++.
T Consensus 407 ~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~--~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l 477 (530)
T PRK15064 407 QWRQEGDDEQAVRGTLGRLLFSQDDI-------KK--SVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESL 477 (530)
T ss_pred HhccCCccHHHHHHHHHHcCCChhHh-------cC--cccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence 321 22345577778887763 222 22 467999999999999999999999771
Q ss_pred -----ccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 653 -----KSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 653 -----~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
.-+.|| .|. + +.||||++|++|+++
T Consensus 478 ~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~ 514 (530)
T PRK15064 478 NMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVV 514 (530)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 112352 232 2 249999999999974
No 318
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.92 E-value=2.3e-25 Score=231.45 Aligned_cols=147 Identities=22% Similarity=0.228 Sum_probs=106.3
Q ss_pred CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCcccccccccc
Q psy845 451 PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGR 530 (677)
Q Consensus 451 ~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~ 530 (677)
.++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.. ++++|
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~-------------~~~~~----------- 92 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEV-------------SVIAI----------- 92 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEE-------------eEEec-----------
Confidence 458999999999999999999999999999999999999999999999852 12222
Q ss_pred CCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccC---CCCChHHH----H
Q psy845 531 TGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPF---GRCHDTEL----W 602 (677)
Q Consensus 531 n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~---~~~sdeeI----~ 602 (677)
++.++ ..|++||+.+. ...+.++. .
T Consensus 93 -----------------------------------------------~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~ 125 (264)
T PRK13546 93 -----------------------------------------------SAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTP 125 (264)
T ss_pred -----------------------------------------------ccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 22222 35788887532 12233333 2
Q ss_pred HHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------------cccccce
Q psy845 603 DALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------------KKSGVNI 658 (677)
Q Consensus 603 ~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------------~~~~~TI 658 (677)
++++..++.+++.. ...+||||||||++||||++++|+++ ...++||
T Consensus 126 ~~l~~~~l~~~~~~---------~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~ti 196 (264)
T PRK13546 126 KIIEFSELGEFIYQ---------PVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTI 196 (264)
T ss_pred HHHHHcCCchhhcC---------CcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEE
Confidence 34445555443321 46799999999999999999999976 1235563
Q ss_pred ---ec---ccc-cccEEEEEeCCeeC
Q psy845 659 ---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 659 ---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
.| .+. .||+|++|++|+++
T Consensus 197 IiisH~~~~i~~~~d~i~~l~~G~i~ 222 (264)
T PRK13546 197 FFVSHNLGQVRQFCTKIAWIEGGKLK 222 (264)
T ss_pred EEEcCCHHHHHHHcCEEEEEECCEEE
Confidence 22 233 48999999999974
No 319
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.92 E-value=1.5e-25 Score=219.22 Aligned_cols=171 Identities=29% Similarity=0.425 Sum_probs=129.5
Q ss_pred CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccc-cccccc
Q psy845 451 PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-FNGIVG 529 (677)
Q Consensus 451 ~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~l-f~~~~~ 529 (677)
..+.+.|||+.++|+++||+|.+|||||||+|+|+|..+|++|+|++||+++.--+-..-.++|-+++|||-- |
T Consensus 26 ~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~----- 100 (267)
T COG4167 26 VEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSL----- 100 (267)
T ss_pred hhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCcccc-----
Confidence 3589999999999999999999999999999999999999999999999998665445556778888888641 1
Q ss_pred cCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHHHHcc
Q psy845 530 RTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSH 609 (677)
Q Consensus 530 ~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~a~ 609 (677)
++ |-+||-+... .++-|-++..+...+++.+.++.+|
T Consensus 101 ----------------------------------NP---Rl~iGqiLd~------PL~l~T~~~~~~R~~~i~~TL~~VG 137 (267)
T COG4167 101 ----------------------------------NP---RLRIGQILDF------PLRLNTDLEPEQRRKQIFETLRMVG 137 (267)
T ss_pred ----------------------------------Ch---hhhhhhHhcc------hhhhcccCChHHHHHHHHHHHHHhc
Confidence 11 4455544333 3455544434455677999999999
Q ss_pred chhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc-------------------------ccccc-e-----
Q psy845 610 LKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK-------------------------KSGVN-I----- 658 (677)
Q Consensus 610 l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~-------------------------~~~~T-I----- 658 (677)
+. |+. +......||-|||||+|+||||+-+|+|.. ..|.. |
T Consensus 138 L~------Pdh--an~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~Qh 209 (267)
T COG4167 138 LL------PDH--ANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQH 209 (267)
T ss_pred cC------ccc--cccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEech
Confidence 85 443 333677999999999999999999999761 11222 2
Q ss_pred eccccc-ccEEEEEeCCeeC
Q psy845 659 TRPVTS-CDKVLVMDNGQAL 677 (677)
Q Consensus 659 LsTI~~-aDrIlVLd~GrIV 677 (677)
+-.+++ +|+|+||++|++|
T Consensus 210 lG~iKHi~D~viVM~EG~vv 229 (267)
T COG4167 210 IGMIKHISDQVLVMHEGEVV 229 (267)
T ss_pred hhHhhhhcccEEEEecCcee
Confidence 233444 8999999999975
No 320
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.92 E-value=2e-25 Score=244.25 Aligned_cols=180 Identities=23% Similarity=0.383 Sum_probs=138.0
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.++++|++.+|++ -.+++||||++++||+-|+.|+||||||||++.|.|+|+|++|+|.+||++++--+
T Consensus 4 ~l~~~~itK~f~~--~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~s--------- 72 (501)
T COG3845 4 ALEMRGITKRFPG--VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKS--------- 72 (501)
T ss_pred eEEEeccEEEcCC--EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCC---------
Confidence 5899999999984 36899999999999999999999999999999999999999999999999875431
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~ 594 (677)
+.+..|..||+|.|.+.|+ +-|+.|||.++.
T Consensus 73 ------------------------------------------------P~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~ 104 (501)
T COG3845 73 ------------------------------------------------PRDAIRLGIGMVHQHFMLVPTLTVAENIILGL 104 (501)
T ss_pred ------------------------------------------------HHHHHHcCCcEEeeccccccccchhhhhhhcC
Confidence 6777888899999999998 569999997654
Q ss_pred CCChHHHHHHHHHccchhhHhhhhcccCCCC----CCCCCChHHHHHHHHHHHHhccchhh-------------------
Q psy845 595 RCHDTELWDALEKSHLKSKVVTMRSKLDSDV----QGDQLSLGEKQLLCLARALLRKTKKK------------------- 651 (677)
Q Consensus 595 ~~sdeeI~~Al~~a~l~efI~~LP~GldT~v----~G~~LSGGQRQRIaIARALLr~p~IL------------------- 651 (677)
+.+.- -..........+.++-+.|.-.+ .-..||-|||||+-|-+||+|+++++
T Consensus 105 e~~~~---~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~ 181 (501)
T COG3845 105 EPSKG---GLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFE 181 (501)
T ss_pred ccccc---cccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 32100 00011111122223333233223 56899999999999999999999976
Q ss_pred -----cccccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 -----KKSGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----~~~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
..+|+|| .| -++ -|||+-||.+||++
T Consensus 182 ~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvv 219 (501)
T COG3845 182 ILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVV 219 (501)
T ss_pred HHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEE
Confidence 3467883 33 333 39999999999974
No 321
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=2.8e-25 Score=219.28 Aligned_cols=168 Identities=24% Similarity=0.293 Sum_probs=127.9
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
+..+|++.+|++....+|+|+|++|++||.++++||||||||||+|+++||.+|+.|+|.+||..|+.-.
T Consensus 4 l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPg---------- 73 (259)
T COG4525 4 LNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG---------- 73 (259)
T ss_pred eehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCC----------
Confidence 4567899999876556999999999999999999999999999999999999999999999999886531
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~- 594 (677)
| .=|+|+|++-|+. .|+.||+.++-
T Consensus 74 ----------------a-------------------------------------ergvVFQ~~~LlPWl~~~dNvafgL~ 100 (259)
T COG4525 74 ----------------A-------------------------------------ERGVVFQNEALLPWLNVIDNVAFGLQ 100 (259)
T ss_pred ----------------c-------------------------------------cceeEeccCccchhhHHHHHHHHHHH
Confidence 1 1256777777775 58999997642
Q ss_pred --CCChHH----HHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 595 --RCHDTE----LWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 595 --~~sdee----I~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
.....+ ..+.+..+|+.++=.+ ...+||||||||+.|||||.-+|+.+
T Consensus 101 l~Gi~k~~R~~~a~q~l~~VgL~~~~~~---------~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~m 171 (259)
T COG4525 101 LRGIEKAQRREIAHQMLALVGLEGAEHK---------YIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQM 171 (259)
T ss_pred hcCCCHHHHHHHHHHHHHHhCccccccc---------ceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHH
Confidence 233332 2334556666544211 46799999999999999999999865
Q ss_pred --------cccccc---eeccccc----ccEEEEEeC--Cee
Q psy845 652 --------KKSGVN---ITRPVTS----CDKVLVMDN--GQA 676 (677)
Q Consensus 652 --------~~~~~T---ILsTI~~----aDrIlVLd~--GrI 676 (677)
...++- |+|.+.. |||++||+- |||
T Consensus 172 QelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRv 213 (259)
T COG4525 172 QELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRV 213 (259)
T ss_pred HHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCcee
Confidence 112332 4666665 899999985 454
No 322
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.92 E-value=2.2e-25 Score=217.57 Aligned_cols=186 Identities=27% Similarity=0.409 Sum_probs=147.5
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
..++++|+..+|++. .|||+||++.++|+.+.|+|.|||||||+++++.=+-.|+.|+|.++|.+|+-.
T Consensus 5 ~~l~v~dlHK~~G~~--eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k--------- 73 (256)
T COG4598 5 NALEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLK--------- 73 (256)
T ss_pred cceehhHHHhhcccc--hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEee---------
Confidence 368899999999765 599999999999999999999999999999999999999999999999998665
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccc--
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLD-- 591 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~-- 591 (677)
+-.+|+++-.|.. ..+.+|.++++|+|...|+ +.|+-||.-
T Consensus 74 --------------------------------~~~~G~l~~ad~~----q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEa 117 (256)
T COG4598 74 --------------------------------RDKDGQLKPADKR----QLQRLRTRLGMVFQHFNLWSHMTVLENVIEA 117 (256)
T ss_pred --------------------------------eCCCCCeeeCCHH----HHHHHHHHhhHhhhhcchhHHHHHHHHHHhc
Confidence 2235666655555 7889999999999999999 579999983
Q ss_pred cC---CCCChHHHH---HHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------------
Q psy845 592 PF---GRCHDTELW---DALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------------- 651 (677)
Q Consensus 592 ~~---~~~sdeeI~---~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------------- 651 (677)
|- +...+|.++ .-+.++|+++.-+. ....|||||+||.||||||.-+|+++
T Consensus 118 PvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~---------YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElV 188 (256)
T COG4598 118 PVHVLGVSKAEAIERAEKYLAKVGIAEKADA---------YPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELV 188 (256)
T ss_pred chHhhcCCHHHHHHHHHHHHHHhCchhhhhc---------CccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHH
Confidence 21 122233333 34667787765443 45789999999999999999988754
Q ss_pred ----------cccccc-e--eccc---cc-ccEEEEEeCCee
Q psy845 652 ----------KKSGVN-I--TRPV---TS-CDKVLVMDNGQA 676 (677)
Q Consensus 652 ----------~~~~~T-I--LsTI---~~-aDrIlVLd~GrI 676 (677)
+.+|+| + ++.. ++ +.+++.+.+|+|
T Consensus 189 gEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~i 230 (256)
T COG4598 189 GEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKI 230 (256)
T ss_pred HHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeeccee
Confidence 346888 2 3322 22 689999999987
No 323
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.92 E-value=9.5e-25 Score=244.44 Aligned_cols=163 Identities=24% Similarity=0.284 Sum_probs=121.8
Q ss_pred ccEEEEeeeEEeCCCC-CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 435 GTIKFKNVSLRYRDNW-PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 435 g~I~fknVsFsY~~~~-~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
..++++|++|+|+++. +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.+.. +
T Consensus 20 ~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~-i-------- 90 (549)
T PRK13545 20 PFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAAL-I-------- 90 (549)
T ss_pred ceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeee-E--------
Confidence 3589999999997642 36999999999999999999999999999999999999999999999997520 0
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhcccc
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDP 592 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~ 592 (677)
.+ ++.++ ..|++||+.+
T Consensus 91 ----~~----------------------------------------------------------~~~l~~~lTV~EnL~l 108 (549)
T PRK13545 91 ----AI----------------------------------------------------------SSGLNGQLTGIENIEL 108 (549)
T ss_pred ----Ee----------------------------------------------------------ccccCCCCcHHHHHHh
Confidence 00 01111 3488999864
Q ss_pred CC---CCChHH----HHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------------
Q psy845 593 FG---RCHDTE----LWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------------- 651 (677)
Q Consensus 593 ~~---~~sdee----I~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------------- 651 (677)
.. ..++++ +.++++.+++.++..+ ...+||||||||++||||++++|+++
T Consensus 109 ~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~---------~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr 179 (549)
T PRK13545 109 KGLMMGLTKEKIKEIIPEIIEFADIGKFIYQ---------PVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFT 179 (549)
T ss_pred hhhhcCCCHHHHHHHHHHHHHHcCChhHhhC---------CcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHH
Confidence 21 223333 3456677777655433 45789999999999999999999976
Q ss_pred ----------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 ----------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
...++|| .|. + +.||+|++|++|+++
T Consensus 180 ~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv 222 (549)
T PRK13545 180 KKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVK 222 (549)
T ss_pred HHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 1135663 222 3 349999999999973
No 324
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.92 E-value=9.1e-25 Score=207.14 Aligned_cols=62 Identities=39% Similarity=0.634 Sum_probs=57.8
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCE
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDF 500 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~ 500 (677)
++++|++++|++. ++++|+||++++||.++|+||||||||||+++|+|+++|++|+|.+||.
T Consensus 1 l~~~~l~~~~~~~--~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~ 62 (144)
T cd03221 1 IELENLSKTYGGK--LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST 62 (144)
T ss_pred CEEEEEEEEECCc--eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe
Confidence 4689999999753 5999999999999999999999999999999999999999999999873
No 325
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.91 E-value=6e-25 Score=211.45 Aligned_cols=177 Identities=26% Similarity=0.374 Sum_probs=139.2
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEec--ccccHHHhhhh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI--ASVELETLRSR 513 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI--~~l~~~~~~~~ 513 (677)
.|+++|++|.|+.. .+|-||+|+.+.||++.+.||||+|||||++.|.=+--|.+|+..|-|... .+.+
T Consensus 2 sirv~~in~~yg~~--q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~------- 72 (242)
T COG4161 2 SIQLNGINCFYGAH--QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTP------- 72 (242)
T ss_pred ceEEcccccccccc--hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCc-------
Confidence 48899999999764 599999999999999999999999999999999999999999999976543 2221
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccc-
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLD- 591 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~- 591 (677)
++....+||+++|+|+|...|+ +.|+-||+-
T Consensus 73 -----------------------------------------------~~k~i~~lr~~vgmvfqqy~lwphltv~enlie 105 (242)
T COG4161 73 -----------------------------------------------SDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIE 105 (242)
T ss_pred -----------------------------------------------cHHHHHHHHHhhhhhhhhhccCchhHHHHHHHh
Confidence 0115678999999999999998 679999993
Q ss_pred -cCC--CCChHH----HHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc------------
Q psy845 592 -PFG--RCHDTE----LWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK------------ 652 (677)
Q Consensus 592 -~~~--~~sdee----I~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~------------ 652 (677)
|.+ ..+++| -.+.++...+.++.++.| -.|||||.||+||||||.-+|+++.
T Consensus 106 ap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p---------lhlsggqqqrvaiaralmmkpqvllfdeptaaldpei 176 (242)
T COG4161 106 APCRVLGLSKDQALARAEKLLKRLRLKPYADRYP---------LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEI 176 (242)
T ss_pred hhHHHhCCCHHHHHHHHHHHHHHhccccccccCc---------eecccchhhhHHHHHHHhcCCcEEeecCcccccCHHH
Confidence 321 233333 345667777877777765 4799999999999999999998762
Q ss_pred ------------ccccc--e-eccc----ccccEEEEEeCCeeC
Q psy845 653 ------------KSGVN--I-TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 653 ------------~~~~T--I-LsTI----~~aDrIlVLd~GrIV 677 (677)
-.|.| | .+.+ +-|.|++.||+|+||
T Consensus 177 taqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~iv 220 (242)
T COG4161 177 TAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIV 220 (242)
T ss_pred HHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeE
Confidence 23444 2 3332 348999999999986
No 326
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.91 E-value=1e-24 Score=224.30 Aligned_cols=128 Identities=23% Similarity=0.317 Sum_probs=96.7
Q ss_pred EEeCCCCCccccceeeEEe-----CCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccccc
Q psy845 444 LRYRDNWPLVLANVSFRIN-----HGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIP 518 (677)
Q Consensus 444 FsY~~~~~~VLknISl~I~-----~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~ 518 (677)
|+|++.. ..++|+|++++ +||++||+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1 ~~y~~~~-~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------------ 61 (246)
T cd03237 1 YTYPTMK-KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------------ 61 (246)
T ss_pred CCCcccc-cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------------
Confidence 5787553 48889999887 69999999999999999999999999999999998873
Q ss_pred CCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc-cccchhhccccCCC-C
Q psy845 519 QDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-FNGTIRYNLDPFGR-C 596 (677)
Q Consensus 519 q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L-FsgTIrENI~~~~~-~ 596 (677)
+++|+||++.. +++|++||+..... .
T Consensus 62 ----------------------------------------------------~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 89 (246)
T cd03237 62 ----------------------------------------------------TVSYKPQYIKADYEGTVRDLLSSITKDF 89 (246)
T ss_pred ----------------------------------------------------eEEEecccccCCCCCCHHHHHHHHhhhc
Confidence 24555666543 57788888853211 1
Q ss_pred --ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 597 --HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 597 --sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
..+...++++..++.+.. +. ...+||||||||++|||||+++|+++
T Consensus 90 ~~~~~~~~~~l~~l~l~~~~-------~~--~~~~LSgGe~qrv~iaraL~~~p~ll 137 (246)
T cd03237 90 YTHPYFKTEIAKPLQIEQIL-------DR--EVPELSGGELQRVAIAACLSKDADIY 137 (246)
T ss_pred cccHHHHHHHHHHcCCHHHh-------hC--ChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 122345566666654432 22 45789999999999999999999876
No 327
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.91 E-value=9.3e-25 Score=219.57 Aligned_cols=146 Identities=19% Similarity=0.227 Sum_probs=105.9
Q ss_pred cccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEE-ECCEecccccHHHhhhhcccccCCccccccccccC
Q psy845 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK-IDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRT 531 (677)
Q Consensus 453 VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~-IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n 531 (677)
||+|+||++++||++||+||||||||||+++|+|+++|++|+|. ++|.++.
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~---------------------------- 53 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP---------------------------- 53 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec----------------------------
Confidence 79999999999999999999999999999999999999999997 6664320
Q ss_pred CCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC---CCChHHHHHHHHH
Q psy845 532 GAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG---RCHDTELWDALEK 607 (677)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~---~~sdeeI~~Al~~ 607 (677)
+.|++.+|. .|++||+.+.. ..+.++..+.+..
T Consensus 54 -------------------------------------------~~~~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~ 90 (213)
T PRK15177 54 -------------------------------------------LGANSFILPGLTGEENARMMASLYGLDGDEFSHFCYQ 90 (213)
T ss_pred -------------------------------------------cccccccCCcCcHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 123455665 49999996432 2333443332211
Q ss_pred ccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------------------cccccce---e--
Q psy845 608 SHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-----------------------KKSGVNI---T-- 659 (677)
Q Consensus 608 a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-----------------------~~~~~TI---L-- 659 (677)
...+++..++ ....||||||||++||||++++|+++ ..+++|+ .
T Consensus 91 ------~~~l~~~~~~--~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~ 162 (213)
T PRK15177 91 ------LTQLEQCYTD--RVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHN 162 (213)
T ss_pred ------HhChhHHhhc--hHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECC
Confidence 2234555555 34689999999999999999999865 1133442 2
Q ss_pred -ccc-ccccEEEEEeCCeeC
Q psy845 660 -RPV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 660 -sTI-~~aDrIlVLd~GrIV 677 (677)
+.+ +.||+|++|++|+++
T Consensus 163 ~~~~~~~~d~i~~l~~G~i~ 182 (213)
T PRK15177 163 PRLIKEHCHAFGVLLHGKIT 182 (213)
T ss_pred HHHHHHhcCeeEEEECCeEE
Confidence 223 349999999999974
No 328
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=2.9e-24 Score=204.92 Aligned_cols=126 Identities=40% Similarity=0.634 Sum_probs=107.3
Q ss_pred EEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccc
Q psy845 438 KFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVI 517 (677)
Q Consensus 438 ~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v 517 (677)
+++|++++|++. ++++|+|+++++||+++|+||||||||||+++|+|.++|++|+|.+||.++.+.
T Consensus 1 ~~~~~~~~~~~~--~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~------------ 66 (157)
T cd00267 1 EIENLSFRYGGR--TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKL------------ 66 (157)
T ss_pred CeEEEEEEeCCe--eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccC------------
Confidence 368999999754 599999999999999999999999999999999999999999999999988665
Q ss_pred cCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCC
Q psy845 518 PQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCH 597 (677)
Q Consensus 518 ~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~s 597 (677)
..+.++++++|++|
T Consensus 67 ----------------------------------------------~~~~~~~~i~~~~q-------------------- 80 (157)
T cd00267 67 ----------------------------------------------PLEELRRRIGYVPQ-------------------- 80 (157)
T ss_pred ----------------------------------------------CHHHHHhceEEEee--------------------
Confidence 44567788999998
Q ss_pred hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------------c--c
Q psy845 598 DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------------K--K 653 (677)
Q Consensus 598 deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------------~--~ 653 (677)
|||||+||++||||++++|+++ . .
T Consensus 81 --------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~ 128 (157)
T cd00267 81 --------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAE 128 (157)
T ss_pred --------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999866 1 1
Q ss_pred cccce---e---ccccc-ccEEEEEeCCe
Q psy845 654 SGVNI---T---RPVTS-CDKVLVMDNGQ 675 (677)
Q Consensus 654 ~~~TI---L---sTI~~-aDrIlVLd~Gr 675 (677)
.++|+ . +.+.+ ||+++++++|+
T Consensus 129 ~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 129 EGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred CCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 23562 2 23344 69999999986
No 329
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=7.2e-25 Score=216.67 Aligned_cols=172 Identities=30% Similarity=0.410 Sum_probs=135.7
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+++||+.+|.+. .|++|+|++|++|..++|+||+|||||||+.+++|+..+++|+|.+||.++.+.
T Consensus 2 I~i~nv~K~y~~~--~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~----------- 68 (252)
T COG4604 2 ITIENVSKSYGTK--VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTST----------- 68 (252)
T ss_pred eeehhhhHhhCCE--EeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccC-----------
Confidence 6789999999764 699999999999999999999999999999999999999999999999999998
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~- 594 (677)
+-++|-+.+++.-|+..+= .-|+||=..+++
T Consensus 69 -----------------------------------------------~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRf 101 (252)
T COG4604 69 -----------------------------------------------PSKELAKKLSILKQENHINSRLTVRDLVGFGRF 101 (252)
T ss_pred -----------------------------------------------ChHHHHHHHHHHHhhchhhheeEHHHHhhcCCC
Confidence 5556666666666666664 568998886543
Q ss_pred -----CCCh---HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 595 -----RCHD---TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 595 -----~~sd---eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
+.+. ..+.+|++-.++.+.-.+ .-.+||||||||--||-.+.++.+-.
T Consensus 102 PYSqGRlt~eD~~~I~~aieyl~L~~l~dr---------yLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv 172 (252)
T COG4604 102 PYSQGRLTKEDRRIINEAIEYLHLEDLSDR---------YLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSV 172 (252)
T ss_pred cccCCCCchHHHHHHHHHHHHhcccchHHH---------hHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHH
Confidence 2222 226778887777654322 23479999999999999999887621
Q ss_pred ----------cccccce---ecccc----cccEEEEEeCCeeC
Q psy845 652 ----------KKSGVNI---TRPVT----SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----------~~~~~TI---LsTI~----~aDrIlVLd~GrIV 677 (677)
..-++|| +|.|. .+|.|+-|+||+++
T Consensus 173 ~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv 215 (252)
T COG4604 173 QIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVV 215 (252)
T ss_pred HHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEE
Confidence 1235673 77663 37999999999985
No 330
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.91 E-value=1e-24 Score=232.74 Aligned_cols=140 Identities=28% Similarity=0.355 Sum_probs=108.3
Q ss_pred EEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhh
Q psy845 469 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVEL 548 (677)
Q Consensus 469 IVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~ 548 (677)
|+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~------------------------------------------- 37 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNV------------------------------------------- 37 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCC-------------------------------------------
Confidence 5899999999999999999999999999999988665
Q ss_pred ccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC---CCC----hHHHHHHHHHccchhhHhhhhcc
Q psy845 549 SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG---RCH----DTELWDALEKSHLKSKVVTMRSK 620 (677)
Q Consensus 549 ~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~---~~s----deeI~~Al~~a~l~efI~~LP~G 620 (677)
+. .+++++|++|++.+|. .|++||+.++. ..+ ++++.++++..++.++..+
T Consensus 38 ---------------~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---- 96 (325)
T TIGR01187 38 ---------------PP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADR---- 96 (325)
T ss_pred ---------------CH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCcchhcC----
Confidence 22 3568999999998886 59999997531 122 2345667777777655433
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------------cc-cccce---eccc----ccccEE
Q psy845 621 LDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------------KK-SGVNI---TRPV----TSCDKV 668 (677)
Q Consensus 621 ldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------------~~-~~~TI---LsTI----~~aDrI 668 (677)
...+||||||||++||||++++|+++ .. .++|+ .|.. +-||||
T Consensus 97 -----~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i 171 (325)
T TIGR01187 97 -----KPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRI 171 (325)
T ss_pred -----ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 34689999999999999999999976 11 25663 3322 349999
Q ss_pred EEEeCCeeC
Q psy845 669 LVMDNGQAL 677 (677)
Q Consensus 669 lVLd~GrIV 677 (677)
++|++|+++
T Consensus 172 ~vl~~G~i~ 180 (325)
T TIGR01187 172 AIMRKGKIA 180 (325)
T ss_pred EEEECCEEE
Confidence 999999974
No 331
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.91 E-value=5.3e-24 Score=241.94 Aligned_cols=138 Identities=27% Similarity=0.351 Sum_probs=105.3
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
.-++++||+++|++. .+|+|+||++++||++||+||||||||||+++|+|+.+|++|+|.+++ + .
T Consensus 323 ~~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~---~--------- 387 (556)
T PRK11819 323 KVIEAENLSKSFGDR--LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T---V--------- 387 (556)
T ss_pred eEEEEEeEEEEECCe--eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c---e---------
Confidence 359999999999753 599999999999999999999999999999999999999999998853 1 1
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc-ccc-ccchhhcccc
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP-VLF-NGTIRYNLDP 592 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~-~LF-sgTIrENI~~ 592 (677)
++||+||++ .++ +.|++||+..
T Consensus 388 --------------------------------------------------------~i~~v~q~~~~~~~~~tv~e~l~~ 411 (556)
T PRK11819 388 --------------------------------------------------------KLAYVDQSRDALDPNKTVWEEISG 411 (556)
T ss_pred --------------------------------------------------------EEEEEeCchhhcCCCCCHHHHHHh
Confidence 366667765 444 4588999864
Q ss_pred CCC---C--ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 593 FGR---C--HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 593 ~~~---~--sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
... . .+++..++++..++.+. ..+. ...+||||||||++||||++++|+++
T Consensus 412 ~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~--~~~~LSgG~~qrv~la~al~~~p~ll 467 (556)
T PRK11819 412 GLDIIKVGNREIPSRAYVGRFNFKGG------DQQK--KVGVLSGGERNRLHLAKTLKQGGNVL 467 (556)
T ss_pred hcccccccccHHHHHHHHHhCCCChh------HhcC--chhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 311 1 12334445555554311 1122 45799999999999999999999977
No 332
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.90 E-value=8e-24 Score=240.24 Aligned_cols=138 Identities=26% Similarity=0.336 Sum_probs=104.8
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
.-++++|++++|++. .+|+|+||+|++||++||+||||||||||+++|+|+.+|++|+|.+++ + .
T Consensus 321 ~~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~---~--------- 385 (552)
T TIGR03719 321 KVIEAENLSKGFGDK--LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T---V--------- 385 (552)
T ss_pred eEEEEeeEEEEECCe--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c---e---------
Confidence 359999999999753 599999999999999999999999999999999999999999998853 1 1
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccc-cc-ccchhhcccc
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV-LF-NGTIRYNLDP 592 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~-LF-sgTIrENI~~ 592 (677)
+++|+||++. ++ +.|++||+..
T Consensus 386 --------------------------------------------------------~i~~v~q~~~~~~~~~tv~e~l~~ 409 (552)
T TIGR03719 386 --------------------------------------------------------KLAYVDQSRDALDPNKTVWEEISG 409 (552)
T ss_pred --------------------------------------------------------EEEEEeCCccccCCCCcHHHHHHh
Confidence 3566677652 44 4588998864
Q ss_pred CCC---CC--hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 593 FGR---CH--DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 593 ~~~---~s--deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
... .. +++..++++..++.+.. .+. ...+||||||||++||||++.+|+++
T Consensus 410 ~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~--~~~~LSgGe~qrv~la~al~~~p~ll 465 (552)
T TIGR03719 410 GLDIIQLGKREVPSRAYVGRFNFKGSD------QQK--KVGQLSGGERNRVHLAKTLKSGGNVL 465 (552)
T ss_pred hccccccCcchHHHHHHHHhCCCChhH------hcC--chhhCCHHHHHHHHHHHHHhhCCCEE
Confidence 321 11 22334455555543110 112 45789999999999999999999976
No 333
>PLN03140 ABC transporter G family member; Provisional
Probab=99.90 E-value=9.7e-24 Score=261.14 Aligned_cols=175 Identities=21% Similarity=0.226 Sum_probs=133.2
Q ss_pred ccEEEEeeeEEeCC-----------CCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC--CccEEEECCEe
Q psy845 435 GTIKFKNVSLRYRD-----------NWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL--SSGQIKIDDFD 501 (677)
Q Consensus 435 g~I~fknVsFsY~~-----------~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p--~~G~I~IdG~d 501 (677)
..+.++||++..+. +...+|+|+|++++|||.+||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 866 ~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~ 945 (1470)
T PLN03140 866 LAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP 945 (1470)
T ss_pred ceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc
Confidence 36999999998742 123699999999999999999999999999999999999763 68999999977
Q ss_pred cccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc
Q psy845 502 IASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL 581 (677)
Q Consensus 502 I~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L 581 (677)
.++ ...|+.+|||+|++.+
T Consensus 946 ~~~-------------------------------------------------------------~~~~~~igyv~Q~d~~ 964 (1470)
T PLN03140 946 KKQ-------------------------------------------------------------ETFARISGYCEQNDIH 964 (1470)
T ss_pred CCh-------------------------------------------------------------HHhhhheEEEcccccc
Confidence 532 2456778888888777
Q ss_pred c-ccchhhccccC------CCCChH----HHHHHHHHccchhhHhhhhcccCCCCC---CCCCChHHHHHHHHHHHHhcc
Q psy845 582 F-NGTIRYNLDPF------GRCHDT----ELWDALEKSHLKSKVVTMRSKLDSDVQ---GDQLSLGEKQLLCLARALLRK 647 (677)
Q Consensus 582 F-sgTIrENI~~~------~~~sde----eI~~Al~~a~l~efI~~LP~GldT~v~---G~~LSGGQRQRIaIARALLr~ 647 (677)
+ +.|++||+.+. .+.+++ .+.++++..++.+. .|+.++ ...||||||||++|||||+.+
T Consensus 965 ~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~~~~LSgGerkRvsIa~aL~~~ 1037 (1470)
T PLN03140 965 SPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPGVTGLSTEQRKRLTIAVELVAN 1037 (1470)
T ss_pred CCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCCCCCcCHHHHHHHHHHHHHhhC
Confidence 6 46999999642 122323 25667777776543 345541 368999999999999999999
Q ss_pred chhh------------------------cccccce---ecc-----cccccEEEEEeC-CeeC
Q psy845 648 TKKK------------------------KKSGVNI---TRP-----VTSCDKVLVMDN-GQAL 677 (677)
Q Consensus 648 p~IL------------------------~~~~~TI---LsT-----I~~aDrIlVLd~-GrIV 677 (677)
|+++ ..+|+|| .|. .+.||++++|++ |+++
T Consensus 1038 P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v 1100 (1470)
T PLN03140 1038 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI 1100 (1470)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEE
Confidence 9976 1246673 332 245999999997 8864
No 334
>PLN03073 ABC transporter F family; Provisional
Probab=99.90 E-value=1.1e-23 Score=245.58 Aligned_cols=164 Identities=23% Similarity=0.302 Sum_probs=120.0
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
.-++++||+++|+++ +++|+|+||+|++||++||+||||||||||+++|+|+.+|++|+|.+++. .++
T Consensus 507 ~~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~-----------~~i 574 (718)
T PLN03073 507 PIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK-----------VRM 574 (718)
T ss_pred ceEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc-----------eeE
Confidence 359999999999654 35999999999999999999999999999999999999999999998652 346
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccc---
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLD--- 591 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~--- 591 (677)
||++|++.. ..++.+|..
T Consensus 575 gyv~Q~~~~-----------------------------------------------------------~l~~~~~~~~~~ 595 (718)
T PLN03073 575 AVFSQHHVD-----------------------------------------------------------GLDLSSNPLLYM 595 (718)
T ss_pred EEEeccccc-----------------------------------------------------------cCCcchhHHHHH
Confidence 777776421 111111110
Q ss_pred --cCCCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc-----------------
Q psy845 592 --PFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK----------------- 652 (677)
Q Consensus 592 --~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~----------------- 652 (677)
.....+++++.++++..++.+... +. ...+||||||||++||||++++|+++.
T Consensus 596 ~~~~~~~~~~~i~~~L~~~gl~~~~~------~~--~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~ 667 (718)
T PLN03073 596 MRCFPGVPEQKLRAHLGSFGVTGNLA------LQ--PMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALI 667 (718)
T ss_pred HHhcCCCCHHHHHHHHHHCCCChHHh------cC--CccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH
Confidence 011234567788888888753211 11 467999999999999999999999771
Q ss_pred ----ccccce---ecc---cc-cccEEEEEeCCeeC
Q psy845 653 ----KSGVNI---TRP---VT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 653 ----~~~~TI---LsT---I~-~aDrIlVLd~GrIV 677 (677)
..+.|| .|. +. .||||++|++|+++
T Consensus 668 ~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G~i~ 703 (718)
T PLN03073 668 QGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVT 703 (718)
T ss_pred HHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 012252 222 22 49999999999974
No 335
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.90 E-value=6.3e-24 Score=212.40 Aligned_cols=173 Identities=24% Similarity=0.307 Sum_probs=127.7
Q ss_pred CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccc
Q psy845 450 WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVG 529 (677)
Q Consensus 450 ~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~ 529 (677)
++++|+++|++|++||.+-++|.+||||||+++.++|-..|++|+|.|||+|+++.+..+-...++-|+|||-.=.
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt---- 93 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGT---- 93 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCC----
Confidence 4579999999999999999999999999999999999999999999999999999965555555555555543211
Q ss_pred cCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC----CCChHHHHHHH
Q psy845 530 RTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG----RCHDTELWDAL 605 (677)
Q Consensus 530 ~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~----~~sdeeI~~Al 605 (677)
--+.||.||+.... +-.-..-.+.-
T Consensus 94 ---------------------------------------------------~~~lTieENl~la~~Rg~~rgl~~~ln~~ 122 (263)
T COG1101 94 ---------------------------------------------------APELTIEENLALAESRGKKRGLSSALNER 122 (263)
T ss_pred ---------------------------------------------------cccccHHHHHHHHHhcCcccccchhhhHH
Confidence 01569999995321 10000001111
Q ss_pred HHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhhccc-------------------------ccc-
Q psy845 606 EKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKKKKS-------------------------GVN- 657 (677)
Q Consensus 606 ~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL~~~-------------------------~~T- 657 (677)
....-.+.+..+|.|++-.+ +-.-|||||||=++++-|.++.|+++... +.|
T Consensus 123 ~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTt 202 (263)
T COG1101 123 RRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTT 202 (263)
T ss_pred HHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCce
Confidence 22233455777888888777 66789999999999999999999988211 122
Q ss_pred --eeccccc----ccEEEEEeCCeeC
Q psy845 658 --ITRPVTS----CDKVLVMDNGQAL 677 (677)
Q Consensus 658 --ILsTI~~----aDrIlVLd~GrIV 677 (677)
|+|..++ -+|.++|++|+||
T Consensus 203 lMVTHnm~~Al~yG~RlImLh~G~Iv 228 (263)
T COG1101 203 LMVTHNMEDALDYGNRLIMLHSGKIV 228 (263)
T ss_pred EEEeccHHHHHhhCCeEEEEeCCeEE
Confidence 3555444 5999999999986
No 336
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.90 E-value=1.2e-23 Score=242.69 Aligned_cols=163 Identities=20% Similarity=0.302 Sum_probs=118.6
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-++++||+++|++. .+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+ |.+ +
T Consensus 319 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~---~---------- 382 (635)
T PRK11147 319 VFEMENVNYQIDGK--QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTK---L---------- 382 (635)
T ss_pred eEEEeeeEEEECCe--EEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCC---c----------
Confidence 48999999999753 5999999999999999999999999999999999999999999988 322 1
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc-ccc-ccchhhccccC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP-VLF-NGTIRYNLDPF 593 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~-~LF-sgTIrENI~~~ 593 (677)
+++|++|++ .++ +.|+.||+...
T Consensus 383 -------------------------------------------------------~i~y~~q~~~~l~~~~tv~e~l~~~ 407 (635)
T PRK11147 383 -------------------------------------------------------EVAYFDQHRAELDPEKTVMDNLAEG 407 (635)
T ss_pred -------------------------------------------------------EEEEEeCcccccCCCCCHHHHHHhh
Confidence 356666654 244 45888888642
Q ss_pred C-CC--C--hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhcc---------------
Q psy845 594 G-RC--H--DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKKK--------------- 653 (677)
Q Consensus 594 ~-~~--s--deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~~--------------- 653 (677)
. .. . ++++.+.++..++.+ +..+. ....||||||||++||||++++|+++.+
T Consensus 408 ~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~--~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l 479 (635)
T PRK11147 408 KQEVMVNGRPRHVLGYLQDFLFHP------KRAMT--PVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELL 479 (635)
T ss_pred cccccccchHHHHHHHHHhcCCCH------HHHhC--hhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence 1 11 1 233445555554421 11222 4578999999999999999999997711
Q ss_pred ------cccce---ecc---c-ccccEEEEEe-CCeeC
Q psy845 654 ------SGVNI---TRP---V-TSCDKVLVMD-NGQAL 677 (677)
Q Consensus 654 ------~~~TI---LsT---I-~~aDrIlVLd-~GrIV 677 (677)
-+.|| .|. + +-||+|++++ +|+++
T Consensus 480 ~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~ 517 (635)
T PRK11147 480 EELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIG 517 (635)
T ss_pred HHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCCCeEE
Confidence 12352 222 2 2499999998 89873
No 337
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.90 E-value=2.3e-23 Score=212.00 Aligned_cols=177 Identities=26% Similarity=0.327 Sum_probs=126.2
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccH-HHhhhh
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL-ETLRSR 513 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~-~~~~~~ 513 (677)
.-|+++||+++|.++ ++|+|+|++|++||+.+|+||||||||||++++++.+.|++|.+.+-|+.....+. .++|++
T Consensus 30 ~li~l~~v~v~r~gk--~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~ 107 (257)
T COG1119 30 PLIELKNVSVRRNGK--KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKR 107 (257)
T ss_pred ceEEecceEEEECCE--eeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHH
Confidence 459999999999764 69999999999999999999999999999999999999999999999999877654 455555
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccc--
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLD-- 591 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~-- 591 (677)
||+|+.+. ++-+.=+.+++|=+.
T Consensus 108 IG~vS~~L-------------------------------------------------------~~~~~~~~~v~dvVlSg 132 (257)
T COG1119 108 IGLVSSEL-------------------------------------------------------HERFRVRETVRDVVLSG 132 (257)
T ss_pred hCccCHHH-------------------------------------------------------Hhhcccccccceeeeec
Confidence 55554321 111111344454441
Q ss_pred cC-------CCCChHHHHH---HHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc---------
Q psy845 592 PF-------GRCHDTELWD---ALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK--------- 652 (677)
Q Consensus 592 ~~-------~~~sdeeI~~---Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~--------- 652 (677)
++ .++++++..+ .++..++.+..++ .-..||-|||||+-||||++++|+++.
T Consensus 133 ~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r---------~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLD 203 (257)
T COG1119 133 FFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADR---------PFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLD 203 (257)
T ss_pred ccccccccccCCCHHHHHHHHHHHHHcchhhhccC---------chhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCC
Confidence 11 1344544433 4555555442211 346899999999999999999999761
Q ss_pred ----------------cc-ccc---eeccc----ccccEEEEEeCCeeC
Q psy845 653 ----------------KS-GVN---ITRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 653 ----------------~~-~~T---ILsTI----~~aDrIlVLd~GrIV 677 (677)
.. +.+ |.|.. ...++++.+++|+++
T Consensus 204 l~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~ 252 (257)
T COG1119 204 LIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVV 252 (257)
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCcee
Confidence 11 112 23433 346999999999985
No 338
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.88 E-value=3e-23 Score=256.71 Aligned_cols=161 Identities=22% Similarity=0.191 Sum_probs=121.6
Q ss_pred CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCC----CCCccEEEECCEecccccHHHhhhhcccccCCcccccc
Q psy845 451 PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV----ELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG 526 (677)
Q Consensus 451 ~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y----~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~ 526 (677)
+.+|+|+|+++++||.+||+||||||||||+|+|+|.. .|++|+|.+||.++++.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~--------------------- 132 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEI--------------------- 132 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHH---------------------
Confidence 35999999999999999999999999999999999986 57899999999887554
Q ss_pred ccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC----------C
Q psy845 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG----------R 595 (677)
Q Consensus 527 ~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~----------~ 595 (677)
+ +..|+.++||+|++.++. .|++||+.+.. +
T Consensus 133 -------------------------------------~-~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~ 174 (1394)
T TIGR00956 133 -------------------------------------K-KHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDG 174 (1394)
T ss_pred -------------------------------------H-hhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCC
Confidence 2 345677889999887774 69999996421 1
Q ss_pred CChHHH-----HHHHHHccchhhHhhhhcccCCCC---CCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 596 CHDTEL-----WDALEKSHLKSKVVTMRSKLDSDV---QGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 596 ~sdeeI-----~~Al~~a~l~efI~~LP~GldT~v---~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
.+.+|. .++++..++. +-.||.+ ....||||||||++||||++++|+++
T Consensus 175 ~~~~~~~~~~~~~~l~~lgL~-------~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~ 247 (1394)
T TIGR00956 175 VSREEYAKHIADVYMATYGLS-------HTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALE 247 (1394)
T ss_pred CCHHHHHHHHHHHHHHHcCcc-------cccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHH
Confidence 222222 2244555443 3356665 24689999999999999999999976
Q ss_pred --------cc-cccce---eccc-----ccccEEEEEeCCeeC
Q psy845 652 --------KK-SGVNI---TRPV-----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~-~~~TI---LsTI-----~~aDrIlVLd~GrIV 677 (677)
.. .|+|+ +|.. +.+|||++|++|+++
T Consensus 248 i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv 290 (1394)
T TIGR00956 248 FIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQI 290 (1394)
T ss_pred HHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEE
Confidence 12 36673 3322 348999999999974
No 339
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.88 E-value=9.4e-23 Score=200.69 Aligned_cols=59 Identities=25% Similarity=0.326 Sum_probs=53.7
Q ss_pred EeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEe
Q psy845 440 KNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 501 (677)
Q Consensus 440 knVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~d 501 (677)
+||+++|++. .+++| ++++++||++||+||||||||||+++|+|+++|++|+|.+||.+
T Consensus 4 ~~l~~~~~~~--~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 62 (177)
T cd03222 4 PDCVKRYGVF--FLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT 62 (177)
T ss_pred CCeEEEECCE--EEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE
Confidence 5889999653 58998 59999999999999999999999999999999999999999854
No 340
>KOG0064|consensus
Probab=99.87 E-value=1.2e-18 Score=191.46 Aligned_cols=460 Identities=16% Similarity=0.146 Sum_probs=258.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhh----hhhhhhhHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 116 LLIITTLYHLISKVFRSVYLRSVFQ----NMWSMLFAFLMICFVFPW--FALPLLIITTLYHLISKVFRSVYLRSVFQNM 189 (677)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~q~~ 189 (677)
.|+++--+-+++.-|+|+|.....- +.---...++.. -.+-| .++|+-.+.-.+|++-.-..--.+.. +
T Consensus 118 gll~~hs~~Li~RTfLSl~VA~LdGqlVk~Ivrk~~r~F~~-~LlkW~liaiPAtFvNS~Iryle~klaLafrtr----L 192 (728)
T KOG0064|consen 118 GLLTAQSFFLISRTFLSLFVAKLDGQLVKNIVRKRGRQFLW-DLLKWFLIAIPASFVNSAIRYLESKLALAFRTR----L 192 (728)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHH-HHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 4556666778888899999765443 332223333332 22356 45666667766665443222222222 2
Q ss_pred HHHHHHHHhhhcccccccc---------chhHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHH----H
Q psy845 190 WSMLFAFLMICFVFPWFAL---------PLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFAL----P 256 (677)
Q Consensus 190 ~~~~f~~~~~~~~~~~f~~---------~~~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~lal----~ 256 (677)
+. ++|=+-+....||+. |...+|.|....++-... -..++..-++-++..-..+.-..-.... .
T Consensus 193 ~~--h~y~~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svah-LysnLtKP~lDl~l~s~~L~~s~~s~g~~~~~~ 269 (728)
T KOG0064|consen 193 TR--HAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAH-LYSNLTKPVLDLILISFTLLDSATSVGAAGITL 269 (728)
T ss_pred HH--HHHHHHhccCceEEEecccchhcCccchhHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhccccccchhh
Confidence 22 333344444467632 235556555544432211 1122222222222111112111111100 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 257 LLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRW 336 (677)
Q Consensus 257 ~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (677)
+.....+...+.+.+.++..++-.++....+.+...-+..+++-++|--|+..+.+.++.++..+..............|
T Consensus 270 ~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm~li~k~r~~ 349 (728)
T KOG0064|consen 270 AGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQMNLIFKVRLW 349 (728)
T ss_pred hhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122222334555666666666666667777888888889999999999999999998888887766554444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------------HhcCCC---H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 337 LAVRIDVLAVIAMAIITGLTVA------------FHGSVS---P-----ALAGLALTYASHVTGLLQFTVRVFVETELNF 396 (677)
Q Consensus 337 ~~~~l~~l~~l~~~l~~g~~lv------------~~G~ls---~-----g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~ 396 (677)
+...-+++.- -.+-|.+++ ..|+.. . ..+...=.........+..++...-++++-.
T Consensus 350 YiMleqF~mK---YvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieRlMssyKeItqLa 426 (728)
T KOG0064|consen 350 YIMLEQFVMK---YTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERLMSSYKEITQLA 426 (728)
T ss_pred HHHHHHHHHH---HhhccCceEEEEeeeeecccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4422222211 011111111 111110 0 1122222223334455666666667777777
Q ss_pred HHHHHHHHhhh---hcC---------CCCCCCCCCcccccccccc---CCCCCccEEEEeeeEEeCCCCCccccceeeEE
Q psy845 397 LAVERINNCSK---KLV---------PEGRGPITSEFGQVKVKLA---DWPRQGTIKFKNVSLRYRDNWPLVLANVSFRI 461 (677)
Q Consensus 397 ~s~eRI~eil~---~~~---------~e~~~~~~~~~~~~~~~~~---~~~~~g~I~fknVsFsY~~~~~~VLknISl~I 461 (677)
.-..|+.+.++ +.. +|..+...........+.+ ......+|.++||-.--|..+ .+.+++||+|
T Consensus 427 Gyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~~~-vvv~~Ltf~i 505 (728)
T KOG0064|consen 427 GYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIPVITPAGD-VLVPKLTFQI 505 (728)
T ss_pred hHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCceeccCcc-eeecceeEEe
Confidence 77778775542 111 1100000000000000000 001234699999988777664 5899999999
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHH
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVA 541 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~ 541 (677)
++|-.+-|.||+|||||+|.+.|.|+|+..+|...+--
T Consensus 506 ~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~------------------------------------------ 543 (728)
T KOG0064|consen 506 EPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR------------------------------------------ 543 (728)
T ss_pred cCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCC------------------------------------------
Confidence 99999999999999999999999999999888765421
Q ss_pred HHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccC--------CCCChHHHHHHHHHccchhh
Q psy845 542 LFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPF--------GRCHDTELWDALEKSHLKSK 613 (677)
Q Consensus 542 ~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~--------~~~sdeeI~~Al~~a~l~ef 613 (677)
+.+|-|+||.|+.=-||+||-|-+- +.++|+|+++.++.++++..
T Consensus 544 ---------------------------~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i 596 (728)
T KOG0064|consen 544 ---------------------------PNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHI 596 (728)
T ss_pred ---------------------------CcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHH
Confidence 1135556666665556666665321 25789999999999999854
Q ss_pred HhhhhcccCCCC-CCCCCChHHHHHHHHHHHHhccchhhcccccc
Q psy845 614 VVTMRSKLDSDV-QGDQLSLGEKQLLCLARALLRKTKKKKKSGVN 657 (677)
Q Consensus 614 I~~LP~GldT~v-~G~~LSGGQRQRIaIARALLr~p~IL~~~~~T 657 (677)
.+-..|+|..- --.-||||+|||+++||.++++|+-..+..||
T Consensus 597 -~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcT 640 (728)
T KOG0064|consen 597 -LQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECT 640 (728)
T ss_pred -HHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhh
Confidence 44466777765 34679999999999999999999855334443
No 341
>KOG0061|consensus
Probab=99.87 E-value=2.4e-22 Score=230.91 Aligned_cols=175 Identities=25% Similarity=0.327 Sum_probs=138.8
Q ss_pred ccEEEEeeeEEeCCC---CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC---CccEEEECCEecccccHH
Q psy845 435 GTIKFKNVSLRYRDN---WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL---SSGQIKIDDFDIASVELE 508 (677)
Q Consensus 435 g~I~fknVsFsY~~~---~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p---~~G~I~IdG~dI~~l~~~ 508 (677)
-+++++|++..-++. .+.+|+|||.+++|||..||.||||||||||++.|+|-.+. .+|+|++||+..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~------ 97 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPR------ 97 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccC------
Confidence 468999999888665 36799999999999999999999999999999999999975 789999999543
Q ss_pred HhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchh
Q psy845 509 TLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIR 587 (677)
Q Consensus 509 ~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIr 587 (677)
+.+.+|+..|||+||..++ +.|++
T Consensus 98 -------------------------------------------------------~~~~~~~~s~yV~QdD~l~~~LTV~ 122 (613)
T KOG0061|consen 98 -------------------------------------------------------DSRSFRKISGYVQQDDVLLPTLTVR 122 (613)
T ss_pred -------------------------------------------------------chhhhhheeEEEcccccccccccHH
Confidence 5567889999999999988 67999
Q ss_pred hccccC------CCCChH----HHHHHHHHccchhhHhhhhcccCCCC---CCCCCChHHHHHHHHHHHHhccchhh---
Q psy845 588 YNLDPF------GRCHDT----ELWDALEKSHLKSKVVTMRSKLDSDV---QGDQLSLGEKQLLCLARALLRKTKKK--- 651 (677)
Q Consensus 588 ENI~~~------~~~sde----eI~~Al~~a~l~efI~~LP~GldT~v---~G~~LSGGQRQRIaIARALLr~p~IL--- 651 (677)
|++.+. ++.+.+ .+++++++-++.+- -||.+ .+..+|||||+|++||--++.||+++
T Consensus 123 EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~-------~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflD 195 (613)
T KOG0061|consen 123 ETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKC-------ADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLD 195 (613)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhh-------ccceecCCCCCccccchhhHHHHHHHHHcCCCEEEec
Confidence 999532 222333 34555555555422 34555 34789999999999999999999987
Q ss_pred ---------------------cccccceeccc--------ccccEEEEEeCCeeC
Q psy845 652 ---------------------KKSGVNITRPV--------TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------------------~~~~~TILsTI--------~~aDrIlVLd~GrIV 677 (677)
+.+||||.-|| +-.|++++|.+|+++
T Consensus 196 EPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~v 250 (613)
T KOG0061|consen 196 EPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVV 250 (613)
T ss_pred CCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEE
Confidence 34688853333 348999999999874
No 342
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.87 E-value=1.9e-22 Score=232.66 Aligned_cols=61 Identities=34% Similarity=0.531 Sum_probs=58.1
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECC
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 499 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG 499 (677)
|+++|++++|++. .+|+|+||++++||++|||||||||||||+++|+|+++|++|+|.++|
T Consensus 4 l~i~~ls~~~~~~--~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~ 64 (635)
T PRK11147 4 ISIHGAWLSFSDA--PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQ 64 (635)
T ss_pred EEEeeEEEEeCCc--eeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCC
Confidence 7899999999753 699999999999999999999999999999999999999999999987
No 343
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.87 E-value=2.8e-22 Score=191.19 Aligned_cols=144 Identities=30% Similarity=0.421 Sum_probs=121.4
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCC---ccEEEECCEecccccHHHhhhh
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS---SGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~---~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
+.++||+.+-++. ..|.|+|++|.+||++-+.||||||||||+.-+.|..+++ +|++.+|++++..++
T Consensus 3 l~l~nvsl~l~g~--cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lP------- 73 (213)
T COG4136 3 LCLKNVSLRLPGS--CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLP------- 73 (213)
T ss_pred eeeeeeeecCCCc--eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccc-------
Confidence 5688999887764 6899999999999999999999999999999999999985 799999999987762
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhcccc
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDP 592 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~ 592 (677)
.-|+++|+.+||+.|| +-++.+||.+
T Consensus 74 -----------------------------------------------------a~qRq~GiLFQD~lLFphlsVg~Nl~f 100 (213)
T COG4136 74 -----------------------------------------------------AAQRQIGILFQDALLFPHLSVGQNLLF 100 (213)
T ss_pred -----------------------------------------------------hhhhheeeeecccccccccccccceEE
Confidence 3467888888888888 5699999953
Q ss_pred C------CCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 593 F------GRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 593 ~------~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
. +++......+|+++.+++++..+-| .+||||||-|+++-|+|+..|+.+
T Consensus 101 Alp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP---------~tlSGGQrARvaL~R~Lla~Pk~l 156 (213)
T COG4136 101 ALPATLKGNARRNAANAALERSGLDGAFHQDP---------ATLSGGQRARVALLRALLAQPKAL 156 (213)
T ss_pred ecCcccccHHHHhhHHHHHHHhccchhhhcCh---------hhcCcchHHHHHHHHHHHhCccee
Confidence 2 2334445677899999988876654 579999999999999999999966
No 344
>PLN03140 ABC transporter G family member; Provisional
Probab=99.87 E-value=6.9e-23 Score=253.67 Aligned_cols=166 Identities=20% Similarity=0.213 Sum_probs=117.9
Q ss_pred CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCC---ccEEEECCEecccccHHHhhhhcccccCCccccccc
Q psy845 451 PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS---SGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGI 527 (677)
Q Consensus 451 ~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~---~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~ 527 (677)
..+|+|+|++++|||.++|+||||||||||+|+|+|..+|+ +|+|.+||+++++.
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~---------------------- 235 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEF---------------------- 235 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhh----------------------
Confidence 35999999999999999999999999999999999999998 99999999988654
Q ss_pred cccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCCC-----------
Q psy845 528 VGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFGR----------- 595 (677)
Q Consensus 528 ~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~~----------- 595 (677)
. .|+.++||+|++.++ +.|++||+.+..+
T Consensus 236 ------------------------------------~---~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~ 276 (1470)
T PLN03140 236 ------------------------------------V---PRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLL 276 (1470)
T ss_pred ------------------------------------c---ccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccch
Confidence 1 256677888877666 4688888854211
Q ss_pred --CChH----------HHH---HHHHHcc------chhhHhh--hhcccCCCC---CCCCCChHHHHHHHHHHHHhccch
Q psy845 596 --CHDT----------ELW---DALEKSH------LKSKVVT--MRSKLDSDV---QGDQLSLGEKQLLCLARALLRKTK 649 (677)
Q Consensus 596 --~sde----------eI~---~Al~~a~------l~efI~~--LP~GldT~v---~G~~LSGGQRQRIaIARALLr~p~ 649 (677)
.+.+ ++. ++....+ .++.++. |.+-.||.+ ....||||||||++||||++.+|+
T Consensus 277 ~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~ 356 (1470)
T PLN03140 277 SELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTK 356 (1470)
T ss_pred hhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCc
Confidence 0011 111 1110001 1122222 333456666 246899999999999999999998
Q ss_pred hh------------------------c-ccccce---ecc-----cccccEEEEEeCCeeC
Q psy845 650 KK------------------------K-KSGVNI---TRP-----VTSCDKVLVMDNGQAL 677 (677)
Q Consensus 650 IL------------------------~-~~~~TI---LsT-----I~~aDrIlVLd~GrIV 677 (677)
++ . ..++|+ ++. ..-||+|++|++|+++
T Consensus 357 vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~iv 417 (1470)
T PLN03140 357 TLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIV 417 (1470)
T ss_pred EEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEE
Confidence 76 1 135673 222 2359999999999985
No 345
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.86 E-value=5.3e-22 Score=195.20 Aligned_cols=128 Identities=24% Similarity=0.243 Sum_probs=93.8
Q ss_pred CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccc
Q psy845 450 WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVG 529 (677)
Q Consensus 450 ~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~ 529 (677)
.+++|+|+||++++||++||+||||||||||+++++ +++|++.++|.. ...
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~~------------------------ 57 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PKF------------------------ 57 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-ccc------------------------
Confidence 357999999999999999999999999999999996 379999988652 111
Q ss_pred cCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHHHHcc
Q psy845 530 RTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSH 609 (677)
Q Consensus 530 ~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~a~ 609 (677)
-|+++++++| .++++..+
T Consensus 58 --------------------------------------~~~~~~~~~q------------------------~~~l~~~~ 75 (176)
T cd03238 58 --------------------------------------SRNKLIFIDQ------------------------LQFLIDVG 75 (176)
T ss_pred --------------------------------------ccccEEEEhH------------------------HHHHHHcC
Confidence 1234666666 23455555
Q ss_pred chhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhcc--chhh------------------------cccccce-----
Q psy845 610 LKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRK--TKKK------------------------KKSGVNI----- 658 (677)
Q Consensus 610 l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~--p~IL------------------------~~~~~TI----- 658 (677)
+.+. ..+. +..+||||||||++||||++++ |+++ ...++||
T Consensus 76 L~~~------~~~~--~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH 147 (176)
T cd03238 76 LGYL------TLGQ--KLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEH 147 (176)
T ss_pred CCcc------ccCC--CcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 4321 0111 5689999999999999999999 8865 1135663
Q ss_pred -ecccccccEEEEEeCCee
Q psy845 659 -TRPVTSCDKVLVMDNGQA 676 (677)
Q Consensus 659 -LsTI~~aDrIlVLd~GrI 676 (677)
.+.++.||||++|++|+.
T Consensus 148 ~~~~~~~~d~i~~l~~g~~ 166 (176)
T cd03238 148 NLDVLSSADWIIDFGPGSG 166 (176)
T ss_pred CHHHHHhCCEEEEECCCCC
Confidence 223567999999988753
No 346
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.86 E-value=4.7e-22 Score=202.09 Aligned_cols=173 Identities=21% Similarity=0.424 Sum_probs=134.3
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.+++++|+.+|++. .|++|+||++++||+.|++|||||||||.+++|+|+.+|++|+|.++|.+++.- .+++||
T Consensus 2 ~L~ie~vtK~Fg~k--~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~----~~~rIG 75 (300)
T COG4152 2 ALEIEGVTKSFGDK--KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQE----IKNRIG 75 (300)
T ss_pred ceEEecchhccCce--eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhh----hhhhcc
Confidence 47899999999764 699999999999999999999999999999999999999999999999998654 677888
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC-
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG- 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~- 594 (677)
|.|++..||. ..|+.|-+.+++
T Consensus 76 yLPEERGLy~---------------------------------------------------------k~tv~dql~yla~ 98 (300)
T COG4152 76 YLPEERGLYP---------------------------------------------------------KMTVEDQLKYLAE 98 (300)
T ss_pred cChhhhccCc---------------------------------------------------------cCcHHHHHHHHHH
Confidence 8888888876 457777776654
Q ss_pred --CCChHHHHHHHHHccchhhHhhhhc-ccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------------------
Q psy845 595 --RCHDTELWDALEKSHLKSKVVTMRS-KLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------------------- 651 (677)
Q Consensus 595 --~~sdeeI~~Al~~a~l~efI~~LP~-GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------------------- 651 (677)
.....|+.+ .+..|++++.- |+.+. +-..||-|..|+|.+--|++++|+++
T Consensus 99 LkGm~~~e~~~-----~~~~wLer~~i~~~~~~-kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~ 172 (300)
T COG4152 99 LKGMPKAEIQK-----KLQAWLERLEIVGKKTK-KIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDA 172 (300)
T ss_pred hcCCcHHHHHH-----HHHHHHHhccccccccc-hHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHH
Confidence 234444432 23345555432 12221 46789999999999999999999865
Q ss_pred ----cccccce-eccc--c----cccEEEEEeCCeeC
Q psy845 652 ----KKSGVNI-TRPV--T----SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----~~~~~TI-LsTI--~----~aDrIlVLd~GrIV 677 (677)
.-+|.|| .|+- + -||+++.|++|+.|
T Consensus 173 I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V 209 (300)
T COG4152 173 IFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTV 209 (300)
T ss_pred HHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceE
Confidence 2357774 3332 1 39999999999864
No 347
>PLN03073 ABC transporter F family; Provisional
Probab=99.85 E-value=3e-21 Score=225.27 Aligned_cols=196 Identities=16% Similarity=0.203 Sum_probs=121.4
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCC---CCCccEEEECCEecccccHHHhh
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV---ELSSGQIKIDDFDIASVELETLR 511 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y---~p~~G~I~IdG~dI~~l~~~~~~ 511 (677)
..|+++|++++|++. .+|+|+||+|++||++|||||||||||||+++|+|.. .|.+|+|.+.++++..-
T Consensus 176 ~~I~i~nls~~y~~~--~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~------ 247 (718)
T PLN03073 176 KDIHMENFSISVGGR--DLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGD------ 247 (718)
T ss_pred eeEEEceEEEEeCCC--EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCC------
Confidence 459999999999753 5999999999999999999999999999999999864 47888887654432110
Q ss_pred hhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccc
Q psy845 512 SRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLD 591 (677)
Q Consensus 512 ~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~ 591 (677)
+ +|.+..++ +.+ ......+++.+++++|++.+...+..+|..
T Consensus 248 -------------~----------~t~~~~v~-------------~~~--~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~ 289 (718)
T PLN03073 248 -------------D----------TTALQCVL-------------NTD--IERTQLLEEEAQLVAQQRELEFETETGKGK 289 (718)
T ss_pred -------------C----------CCHHHHHH-------------Hhh--HHHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 0 00000000 000 001223566788899988765445555542
Q ss_pred cC--CCCCh----HHHHHHHHHccch------hhHhhhhc--ccCCC-C--CCCCCChHHHHHHHHHHHHhccchhhc--
Q psy845 592 PF--GRCHD----TELWDALEKSHLK------SKVVTMRS--KLDSD-V--QGDQLSLGEKQLLCLARALLRKTKKKK-- 652 (677)
Q Consensus 592 ~~--~~~sd----eeI~~Al~~a~l~------efI~~LP~--GldT~-v--~G~~LSGGQRQRIaIARALLr~p~IL~-- 652 (677)
.. ...+. +++.++++..++. +-+.+.-+ |++.. . .-.+||||||||++|||||+++|+++.
T Consensus 290 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLD 369 (718)
T PLN03073 290 GANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLD 369 (718)
T ss_pred cccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 11 11111 2233333333221 11111111 22211 1 357899999999999999999999771
Q ss_pred -------------------ccccce---ecc---cc-cccEEEEEeCCee
Q psy845 653 -------------------KSGVNI---TRP---VT-SCDKVLVMDNGQA 676 (677)
Q Consensus 653 -------------------~~~~TI---LsT---I~-~aDrIlVLd~GrI 676 (677)
.-+.|+ .|. +. -||+|++|++|++
T Consensus 370 EPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~~~d~i~~l~~g~i 419 (718)
T PLN03073 370 EPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDILHLHGQKL 419 (718)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 113452 222 22 3999999999997
No 348
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.84 E-value=1.2e-21 Score=220.44 Aligned_cols=143 Identities=23% Similarity=0.359 Sum_probs=111.5
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHh-hhcccccccccccc-cchhhccccCCCC---ChHH
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR-SRLSVIPQDPVLFN-GTIRYNLDPFGRC---HDTE 600 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR-~~I~~V~Qd~~LFs-gTIrENI~~~~~~---sdee 600 (677)
+.+|.||||||||+++|.|+++|++|+|+++|.++...+....+ +.++||+|++.++. .|++||+.+.... .+++
T Consensus 41 ~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 120 (510)
T PRK15439 41 ALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQK 120 (510)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHH
Confidence 56899999999999999999999999999999998877666554 57999999999886 5999999754221 2344
Q ss_pred HHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------------ccccc
Q psy845 601 LWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------------KKSGV 656 (677)
Q Consensus 601 I~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------------~~~~~ 656 (677)
+.++++..++.+.. +. ...+||||||||++|||||+++|+++ ..+++
T Consensus 121 ~~~~l~~~~l~~~~-------~~--~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~ 191 (510)
T PRK15439 121 MKQLLAALGCQLDL-------DS--SAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGV 191 (510)
T ss_pred HHHHHHHcCCCccc-------cC--ChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC
Confidence 66677777664332 22 45789999999999999999999976 12356
Q ss_pred ce---ecc---c-ccccEEEEEeCCeeC
Q psy845 657 NI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 657 TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
|| .|. + .-||||++|++|+++
T Consensus 192 tiiivtHd~~~~~~~~d~i~~l~~G~i~ 219 (510)
T PRK15439 192 GIVFISHKLPEIRQLADRISVMRDGTIA 219 (510)
T ss_pred EEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 63 332 2 349999999999974
No 349
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.1e-21 Score=220.37 Aligned_cols=143 Identities=22% Similarity=0.324 Sum_probs=108.3
Q ss_pred cccccCCCCCchhHHHHHHhhhh--ccccccccccchhhhhHHH-Hhhhcccccccccccc-cchhhccccCCC------
Q psy845 526 GIVGRTGAGKSSLLVALFRLVEL--SSGQIKIDDFDIASVELET-LRSRLSVIPQDPVLFN-GTIRYNLDPFGR------ 595 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~--~~g~i~~~~~~~~~~~~~~-LR~~I~~V~Qd~~LFs-gTIrENI~~~~~------ 595 (677)
+.+|.||||||||+++|.|+++| ++|+|+++|.++...+..+ .|++++||+|++.+|. .|++||+.+...
T Consensus 35 ~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~ 114 (506)
T PRK13549 35 SLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGI 114 (506)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCC
Confidence 57899999999999999999996 8999999999997766543 5678999999999885 599999975321
Q ss_pred CCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------------------
Q psy845 596 CHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------------------- 651 (677)
Q Consensus 596 ~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------------------- 651 (677)
.+. +++.++++..++.+.. +. ...+||||||||++||||++++|+++
T Consensus 115 ~~~~~~~~~~~~~l~~~~l~~~~-------~~--~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 185 (506)
T PRK13549 115 MDYDAMYLRAQKLLAQLKLDINP-------AT--PVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDI 185 (506)
T ss_pred cCHHHHHHHHHHHHHHcCCCCCc-------cc--chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 111 2344555555543221 22 45789999999999999999999976
Q ss_pred ----cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 ----KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+++|| .|. + +-||||++|++|+++
T Consensus 186 l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~ 222 (506)
T PRK13549 186 IRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHI 222 (506)
T ss_pred HHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEe
Confidence 1235562 333 2 249999999999974
No 350
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.84 E-value=4.5e-21 Score=195.38 Aligned_cols=149 Identities=26% Similarity=0.333 Sum_probs=111.5
Q ss_pred CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCcccccccccc
Q psy845 451 PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGR 530 (677)
Q Consensus 451 ~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~ 530 (677)
.++|+||||++++||++||||++|||||||+|+|+|.|+|++|+|.++|.--.-+
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li------------------------- 94 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLI------------------------- 94 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhh-------------------------
Confidence 4799999999999999999999999999999999999999999999999542111
Q ss_pred CCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC---CCChHH----HHH
Q psy845 531 TGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG---RCHDTE----LWD 603 (677)
Q Consensus 531 n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~---~~sdee----I~~ 603 (677)
+++.| + --+.|-||||.+.+ ..+.+| ..+
T Consensus 95 ----------------~lg~G----------------------f------~pelTGreNi~l~~~~~G~~~~ei~~~~~e 130 (249)
T COG1134 95 ----------------ELGAG----------------------F------DPELTGRENIYLRGLILGLTRKEIDEKVDE 130 (249)
T ss_pred ----------------hcccC----------------------C------CcccchHHHHHHHHHHhCccHHHHHHHHHH
Confidence 12222 0 01458899995322 233444 445
Q ss_pred HHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------------cccccce-
Q psy845 604 ALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------------KKSGVNI- 658 (677)
Q Consensus 604 Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------------~~~~~TI- 658 (677)
..+-+++.+|+ |.+ -.+.|.|.+-|+|.|=|.-.+|+|+ ..+++||
T Consensus 131 IieFaELG~fi-------~~P--vktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv 201 (249)
T COG1134 131 IIEFAELGDFI-------DQP--VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIV 201 (249)
T ss_pred HHHHHHHHHHh-------hCc--hhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEE
Confidence 56667777775 344 3689999999999999999999987 1245563
Q ss_pred -----ecccc-cccEEEEEeCCeeC
Q psy845 659 -----TRPVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 659 -----LsTI~-~aDrIlVLd~GrIV 677 (677)
...++ .|||+++|++|++.
T Consensus 202 ~VSHd~~~I~~~Cd~~i~l~~G~i~ 226 (249)
T COG1134 202 LVSHDLGAIKQYCDRAIWLEHGQIR 226 (249)
T ss_pred EEECCHHHHHHhcCeeEEEeCCEEE
Confidence 23343 49999999999973
No 351
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=9.9e-21 Score=191.22 Aligned_cols=177 Identities=26% Similarity=0.333 Sum_probs=128.7
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcC--CCCCccEEEECCEecccccHHH-hhh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRL--VELSSGQIKIDDFDIASVELET-LRS 512 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~--y~p~~G~I~IdG~dI~~l~~~~-~~~ 512 (677)
-++++|++.+-.++ +++||++|++|++||+.||.||||||||||.+.|+|. |++++|+|.+||+||.++++++ .|.
T Consensus 3 ~L~I~dLhv~v~~~-keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 3 MLEIKDLHVEVEGK-KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred eeEEeeeEEEecCc-hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 37889999887653 4699999999999999999999999999999999998 6899999999999999996543 355
Q ss_pred hcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcccc
Q psy845 513 RLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDP 592 (677)
Q Consensus 513 ~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~ 592 (677)
-+.+-+|.|.=++|. |+++-++.
T Consensus 82 GifLafQ~P~ei~GV---------------------------------------------------------~~~~fLr~ 104 (251)
T COG0396 82 GIFLAFQYPVEIPGV---------------------------------------------------------TNSDFLRA 104 (251)
T ss_pred CCEEeecCCccCCCe---------------------------------------------------------eHHHHHHH
Confidence 555555555544432 33333321
Q ss_pred C------C----CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 593 F------G----RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 593 ~------~----~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
. . ....+++.++++..++++.. ++-.+ ...+|||||.|.-|+.+++-+|+..
T Consensus 105 a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~------l~R~v-N~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDI 177 (251)
T COG0396 105 AMNARRGARGILPEFIKELKEKAELLGLDEEF------LERYV-NEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDI 177 (251)
T ss_pred HHHhhhccccccHHHHHHHHHHHHHcCCCHHH------hhccc-CCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccH
Confidence 0 0 12246678888888887622 11122 3579999999999999999999854
Q ss_pred -------------cccccc---eecc---c--ccccEEEEEeCCeeC
Q psy845 652 -------------KKSGVN---ITRP---V--TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------------~~~~~T---ILsT---I--~~aDrIlVLd~GrIV 677 (677)
.-.++. |+|. . -..|++.||-+||||
T Consensus 178 dalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv 224 (251)
T COG0396 178 DALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIV 224 (251)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEE
Confidence 112333 2221 1 136999999999986
No 352
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.4e-21 Score=219.27 Aligned_cols=144 Identities=26% Similarity=0.368 Sum_probs=109.2
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccchhhhh-HHHHhhhcccccccccccc-cchhhccccCC-----C-C
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE-LETLRSRLSVIPQDPVLFN-GTIRYNLDPFG-----R-C 596 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~-~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~-----~-~ 596 (677)
-+.+|.||||||||+++|.|+++|++|+|+++|.++...+ .+.+|++++||+|++.+|. .|++||+.+.. . .
T Consensus 33 ~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~ 112 (501)
T PRK11288 33 HALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIV 112 (501)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCC
Confidence 3678999999999999999999999999999999986543 4467889999999999986 59999997531 1 1
Q ss_pred C----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------------
Q psy845 597 H----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------------- 651 (677)
Q Consensus 597 s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------------- 651 (677)
. ++++.++++..++.+. .+. ...+||||||||++||||++++|+++
T Consensus 113 ~~~~~~~~~~~~l~~~~l~~~-------~~~--~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l 183 (501)
T PRK11288 113 NRRLLNYEAREQLEHLGVDID-------PDT--PLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVI 183 (501)
T ss_pred CHHHHHHHHHHHHHHcCCCCC-------cCC--chhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHH
Confidence 1 1234455555554321 122 45789999999999999999999976
Q ss_pred ---cccccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 ---KKSGVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---~~~~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
..+++|| .|.. ..||||++|++|+++
T Consensus 184 ~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~ 219 (501)
T PRK11288 184 RELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYV 219 (501)
T ss_pred HHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 1235663 3332 349999999999974
No 353
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.84 E-value=1.6e-21 Score=218.84 Aligned_cols=143 Identities=26% Similarity=0.319 Sum_probs=107.6
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHH-Hhhhcccccccccccc-cchhhccccCCC-------C
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET-LRSRLSVIPQDPVLFN-GTIRYNLDPFGR-------C 596 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-LR~~I~~V~Qd~~LFs-gTIrENI~~~~~-------~ 596 (677)
+.+|.||||||||+++|.|+.+|++|+|.++|.++...+... .|++++||+|++.+|. .|++||+.++.. .
T Consensus 34 ~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 113 (501)
T PRK10762 34 ALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRI 113 (501)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCcc
Confidence 678999999999999999999999999999999986654433 4678999999998885 599999975321 1
Q ss_pred Ch----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------------
Q psy845 597 HD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------------- 651 (677)
Q Consensus 597 sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------------- 651 (677)
+. +++.++++..++.+.. |. ...+||||||||++||||++++|+++
T Consensus 114 ~~~~~~~~~~~~l~~~~l~~~~-------~~--~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 184 (501)
T PRK10762 114 DWKKMYAEADKLLARLNLRFSS-------DK--LVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVI 184 (501)
T ss_pred CHHHHHHHHHHHHHHcCCCCCc-------cC--chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHH
Confidence 11 2344455555553321 22 35689999999999999999999976
Q ss_pred ---cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 ---KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
...++|| .|. + +-||||++|++|+++
T Consensus 185 ~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~ 220 (501)
T PRK10762 185 RELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFI 220 (501)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE
Confidence 1234563 332 2 349999999999974
No 354
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.8e-21 Score=217.73 Aligned_cols=144 Identities=23% Similarity=0.361 Sum_probs=107.3
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccchhhhh-HHHHhhhccccccccccc-ccchhhccccCC----C--C
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE-LETLRSRLSVIPQDPVLF-NGTIRYNLDPFG----R--C 596 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~-~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~----~--~ 596 (677)
-+.+|.||||||||+++|.|+.+|++|+|.++|.++...+ .+.+|++++||+|++.++ +.|++||+.+.. . .
T Consensus 27 ~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~ 106 (491)
T PRK10982 27 HALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFV 106 (491)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhccccccccccc
Confidence 3678999999999999999999999999999999987553 345678899999999887 469999997531 1 1
Q ss_pred ChH----HHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------------
Q psy845 597 HDT----ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------------- 651 (677)
Q Consensus 597 sde----eI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------------- 651 (677)
+.+ ++.++++..++.+. .+. ...+||||||||++||||++++|+++
T Consensus 107 ~~~~~~~~~~~~l~~~~l~~~-------~~~--~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 177 (491)
T PRK10982 107 DQDKMYRDTKAIFDELDIDID-------PRA--KVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTII 177 (491)
T ss_pred CHHHHHHHHHHHHHHcCCCCC-------ccC--chhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 222 23334444443221 111 46799999999999999999999976
Q ss_pred ---cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 ---KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
...++|+ .|. + ..||||++|++|+++
T Consensus 178 ~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~ 213 (491)
T PRK10982 178 RKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWI 213 (491)
T ss_pred HHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 1235562 333 2 349999999999974
No 355
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.5e-21 Score=219.32 Aligned_cols=143 Identities=27% Similarity=0.395 Sum_probs=108.5
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHH-Hhhhcccccccccccc-cchhhccccCCC-------C
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET-LRSRLSVIPQDPVLFN-GTIRYNLDPFGR-------C 596 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-LR~~I~~V~Qd~~LFs-gTIrENI~~~~~-------~ 596 (677)
+.+|.||||||||+++|.|+.+|++|+|+++|.++...+... .|++++||+|++.+|. .|++||+.+... .
T Consensus 35 ~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 114 (510)
T PRK09700 35 ALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGV 114 (510)
T ss_pred EEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccc
Confidence 578999999999999999999999999999999998776554 4567999999999886 599999974311 0
Q ss_pred ---C----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------
Q psy845 597 ---H----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------ 651 (677)
Q Consensus 597 ---s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------ 651 (677)
+ ++++.++++..++.+. .+. ...+||||||||++||||++++|+++
T Consensus 115 ~~~~~~~~~~~~~~~l~~~gl~~~-------~~~--~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~ 185 (510)
T PRK09700 115 NIIDWREMRVRAAMMLLRVGLKVD-------LDE--KVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLF 185 (510)
T ss_pred cccCHHHHHHHHHHHHHHcCCCCC-------ccc--chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 1 1234455555555332 222 35689999999999999999999976
Q ss_pred ------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 ------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+++|| .|. + .-||||++|++|+++
T Consensus 186 ~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~ 224 (510)
T PRK09700 186 LIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSV 224 (510)
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEe
Confidence 1235663 333 2 249999999999974
No 356
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.83 E-value=4.4e-21 Score=214.51 Aligned_cols=143 Identities=20% Similarity=0.121 Sum_probs=111.6
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc---------cccchhhccccCCC
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL---------FNGTIRYNLDPFGR 595 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L---------FsgTIrENI~~~~~ 595 (677)
-+.+|+||||||||+++|.|+.+|++|+|.++|.++...+..++|+.+++++|++.+ +..|++||+... .
T Consensus 32 ~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-~ 110 (490)
T PRK10938 32 WAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-V 110 (490)
T ss_pred EEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc-h
Confidence 367899999999999999999999999999999888766667788899999998753 246889988642 1
Q ss_pred CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------------
Q psy845 596 CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------------ 651 (677)
Q Consensus 596 ~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------------ 651 (677)
..++++.++++..++.+.... ...+||||||||++||||++++|+++
T Consensus 111 ~~~~~~~~~l~~~~l~~~~~~---------~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 181 (490)
T PRK10938 111 KDPARCEQLAQQFGITALLDR---------RFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASL 181 (490)
T ss_pred hHHHHHHHHHHHcCCHhhhhC---------CcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 224556777887777544322 45789999999999999999999976
Q ss_pred cccccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 KKSGVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ~~~~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
..+++|| .|.+ +-||+|++|++|+++
T Consensus 182 ~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~ 214 (490)
T PRK10938 182 HQSGITLVLVLNRFDEIPDFVQFAGVLADCTLA 214 (490)
T ss_pred HhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEE
Confidence 1235662 3333 238999999999974
No 357
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.83 E-value=2.1e-20 Score=211.09 Aligned_cols=62 Identities=47% Similarity=0.697 Sum_probs=57.8
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECC
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 499 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG 499 (677)
.|+++|++++|+++ ++++|+|+++.+|+++||||+||||||||+++|+|..+|++|+|..++
T Consensus 3 ~i~~~~ls~~~g~~--~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~ 64 (530)
T COG0488 3 MITLENLSLAYGDR--PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK 64 (530)
T ss_pred eEEEeeeEEeeCCc--eeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecC
Confidence 47899999999654 699999999999999999999999999999999999999999998865
No 358
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.83 E-value=1e-20 Score=187.13 Aligned_cols=148 Identities=25% Similarity=0.334 Sum_probs=121.8
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECC-EecccccHHHhhhhc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD-FDIASVELETLRSRL 514 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG-~dI~~l~~~~~~~~i 514 (677)
-++++||+.++++- .+|+|+||++.+||.-+|+||+||||||++..++|--+|+.|+++++| .|++.++
T Consensus 5 iL~~~~vsVsF~GF--~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~-------- 74 (249)
T COG4674 5 ILYLDGVSVSFGGF--KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLP-------- 74 (249)
T ss_pred eEEEeceEEEEcce--eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCC--------
Confidence 47889999999764 599999999999999999999999999999999999999999999999 8998883
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~ 593 (677)
..+--|..||==+|.|..| +.|++||+...
T Consensus 75 -------------------------------------------------e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA 105 (249)
T COG4674 75 -------------------------------------------------EHRIARAGIGRKFQKPTVFENLTVRENLELA 105 (249)
T ss_pred -------------------------------------------------HHHHHHhccCccccCCeehhhccHHHHHHHH
Confidence 3444566777778888888 56999998421
Q ss_pred ------------CCCC-h--HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 594 ------------GRCH-D--TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 594 ------------~~~s-d--eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
.+.+ + +++.+++...++.+.... ....||.||||++-|+--+.++|+.+
T Consensus 106 ~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~---------~A~~LSHGqKQwLEIGMll~Q~P~lL 169 (249)
T COG4674 106 LNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDR---------LAALLSHGQKQWLEIGMLLAQDPKLL 169 (249)
T ss_pred hcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhh---------hhhhhccchhhhhhhheeeccCCcEE
Confidence 1112 2 247778887777654332 46799999999999999999999987
No 359
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.82 E-value=8e-21 Score=212.94 Aligned_cols=145 Identities=23% Similarity=0.313 Sum_probs=107.1
Q ss_pred ccccccCCCCCchhHHHHHHhhhh--ccccccccccchhhhhHHH-Hhhhcccccccccccc-cchhhccccCCC-----
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVEL--SSGQIKIDDFDIASVELET-LRSRLSVIPQDPVLFN-GTIRYNLDPFGR----- 595 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~--~~g~i~~~~~~~~~~~~~~-LR~~I~~V~Qd~~LFs-gTIrENI~~~~~----- 595 (677)
-+.+|.||||||||+++|.|+.+| ++|+|.++|.+++..+... .|++++||||++.+|. .|++||+.+...
T Consensus 30 ~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~ 109 (500)
T TIGR02633 30 VGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPG 109 (500)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccc
Confidence 367899999999999999999997 7999999999987765443 4678999999998885 599999964321
Q ss_pred --CCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------
Q psy845 596 --CHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------ 651 (677)
Q Consensus 596 --~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------ 651 (677)
... +++.++++..++.+... +. ...+||||||||++||||++++|+++
T Consensus 110 ~~~~~~~~~~~~~~~l~~~~l~~~~~------~~--~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~ 181 (500)
T TIGR02633 110 GRMAYNAMYLRAKNLLRELQLDADNV------TR--PVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILL 181 (500)
T ss_pred cccCHHHHHHHHHHHHHHcCCCCCcc------cC--chhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Confidence 111 22444555554432110 11 35689999999999999999999976
Q ss_pred ------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 ------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+++|| .|. + +-||||++|++|+++
T Consensus 182 ~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~ 220 (500)
T TIGR02633 182 DIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHV 220 (500)
T ss_pred HHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEe
Confidence 1235563 332 2 249999999999974
No 360
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.82 E-value=2.1e-20 Score=192.57 Aligned_cols=160 Identities=28% Similarity=0.392 Sum_probs=107.5
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccC
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRT 531 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n 531 (677)
++.+|+||+|+|||+++++|||||||||.+|+|.|...|++|.|.++|.+.-+
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~--------------------------- 90 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR--------------------------- 90 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch---------------------------
Confidence 58999999999999999999999999999999999999999999999988644
Q ss_pred CCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccc-ccccccc-ccchhhccccC---CCCChHHHHHHHH
Q psy845 532 GAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVI-PQDPVLF-NGTIRYNLDPF---GRCHDTELWDALE 606 (677)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V-~Qd~~LF-sgTIrENI~~~---~~~sdeeI~~Al~ 606 (677)
+.++.-+++++| .|...|. +.-+.|-+... .++.|++..+-++
T Consensus 91 --------------------------------~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~ 138 (325)
T COG4586 91 --------------------------------RREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLD 138 (325)
T ss_pred --------------------------------hHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHH
Confidence 222222333333 2443332 22233322111 1233333322111
Q ss_pred HccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh-------------------------cccccce-
Q psy845 607 KSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK-------------------------KKSGVNI- 658 (677)
Q Consensus 607 ~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL-------------------------~~~~~TI- 658 (677)
++++= -+++..+ +-..||-|||-|.-||-||+++|+++ ...+.||
T Consensus 139 -----~l~ei--Ldl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVl 211 (325)
T COG4586 139 -----FLTEI--LDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVL 211 (325)
T ss_pred -----HHHHH--hcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEE
Confidence 11111 1333334 56799999999999999999999987 1345565
Q ss_pred -eccc-----ccccEEEEEeCCeeC
Q psy845 659 -TRPV-----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 659 -LsTI-----~~aDrIlVLd~GrIV 677 (677)
.+++ +-||||+.+++||++
T Consensus 212 lTTH~~~di~~lc~rv~~I~~Gqlv 236 (325)
T COG4586 212 LTTHIFDDIATLCDRVLLIDQGQLV 236 (325)
T ss_pred EEecchhhHHHhhhheEEeeCCcEe
Confidence 2222 349999999999985
No 361
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=5.3e-20 Score=181.17 Aligned_cols=144 Identities=27% Similarity=0.352 Sum_probs=115.0
Q ss_pred EEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccc
Q psy845 438 KFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVI 517 (677)
Q Consensus 438 ~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v 517 (677)
+.+|++-.- ++...+.++||++.+||.+-|.||||||||||+++|+|+.+|++|+|+++|.++.+.
T Consensus 4 ~a~~L~~~R--~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~------------ 69 (209)
T COG4133 4 EAENLSCER--GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNV------------ 69 (209)
T ss_pred hhhhhhhcc--CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccc------------
Confidence 345555433 334689999999999999999999999999999999999999999999999988775
Q ss_pred cCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc-cccchhhccccCC--
Q psy845 518 PQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-FNGTIRYNLDPFG-- 594 (677)
Q Consensus 518 ~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L-FsgTIrENI~~~~-- 594 (677)
.++.++.+-|+.-.+-+ -..|+.||+.+..
T Consensus 70 -----------------------------------------------~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~ 102 (209)
T COG4133 70 -----------------------------------------------RESYHQALLYLGHQPGIKTELTALENLHFWQRF 102 (209)
T ss_pred -----------------------------------------------hhhHHHHHHHhhccccccchhhHHHHHHHHHHH
Confidence 33345566666544444 3679999997543
Q ss_pred --CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 595 --RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 595 --~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
..+++.+++|++.+++..+. |. .-.+||.||+.|+||||-++..+|+-
T Consensus 103 ~~~~~~~~i~~Al~~vgL~g~~-------dl--p~~~LSAGQqRRvAlArL~ls~~pLW 152 (209)
T COG4133 103 HGSGNAATIWEALAQVGLAGLE-------DL--PVGQLSAGQQRRVALARLWLSPAPLW 152 (209)
T ss_pred hCCCchhhHHHHHHHcCccccc-------cc--chhhcchhHHHHHHHHHHHcCCCCce
Confidence 35678899999999998753 22 35699999999999999999988854
No 362
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.80 E-value=3.4e-20 Score=208.93 Aligned_cols=172 Identities=30% Similarity=0.407 Sum_probs=129.0
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+++|++++|++ ..+|+|+||++++||++
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~------------------------------------------------- 29 (520)
T TIGR03269 1 IEVKNLTKKFDG--KEVLKNISFTIEEGEVL------------------------------------------------- 29 (520)
T ss_pred CEEEEEEEEECC--eEeeeceeEEEcCCCEE-------------------------------------------------
Confidence 478999999964 36999999999999844
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhh--hhcccccccc-----------------------ccchh-------h--
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLV--ELSSGQIKID-----------------------DFDIA-------S-- 562 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~--~~~~g~i~~~-----------------------~~~~~-------~-- 562 (677)
+.+|.||||||||+++|.|+. +|++|+|+++ |.++. .
T Consensus 30 ---------~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~ 100 (520)
T TIGR03269 30 ---------GILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLS 100 (520)
T ss_pred ---------EEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccchhhhccC
Confidence 568999999999999999996 7999999997 22221 1
Q ss_pred -hhHHHHhhhccccccc-ccccc-cchhhccccC---CCCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCCh
Q psy845 563 -VELETLRSRLSVIPQD-PVLFN-GTIRYNLDPF---GRCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSL 632 (677)
Q Consensus 563 -~~~~~LR~~I~~V~Qd-~~LFs-gTIrENI~~~---~~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSG 632 (677)
.....+|+.++||+|+ +.+|+ .|++||+.+. ...+ ++++.++++..++.+...+ ...+|||
T Consensus 101 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~LSg 171 (520)
T TIGR03269 101 DKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITH---------IARDLSG 171 (520)
T ss_pred HHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhc---------CcccCCH
Confidence 1234578899999998 67775 6999999642 1122 2345667777776544322 3578999
Q ss_pred HHHHHHHHHHHHhccchhh------------------------cc-cccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 633 GEKQLLCLARALLRKTKKK------------------------KK-SGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 633 GQRQRIaIARALLr~p~IL------------------------~~-~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
|||||++||||++++|+++ .. .++|| .|. + +-||||++|++|+++
T Consensus 172 Gq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~ 248 (520)
T TIGR03269 172 GEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIK 248 (520)
T ss_pred HHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEe
Confidence 9999999999999999976 11 25663 332 3 249999999999974
No 363
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.80 E-value=4e-20 Score=208.88 Aligned_cols=147 Identities=27% Similarity=0.413 Sum_probs=108.0
Q ss_pred ccccccCCCCCchhHHHHHHhhhh-----ccccccccccchhhhhHH---HHh-hhccccccccc--cc-ccchhhcccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIASVELE---TLR-SRLSVIPQDPV--LF-NGTIRYNLDP 592 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~-----~~g~i~~~~~~~~~~~~~---~LR-~~I~~V~Qd~~--LF-sgTIrENI~~ 592 (677)
-+.+|+||||||||+++|.|+++| ++|+|+++|.++...+.. .+| ++++||+|++. ++ ..|++||+..
T Consensus 38 ~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~ 117 (529)
T PRK15134 38 LALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYE 117 (529)
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHH
Confidence 367899999999999999999987 799999999998765443 344 58999999985 44 3589999852
Q ss_pred C----CCCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------
Q psy845 593 F----GRCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------- 651 (677)
Q Consensus 593 ~----~~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------- 651 (677)
. ...+ .+++.++++..++.+.... .+. ...+||||||||++||||++.+|+++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~----~~~--~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~ 191 (529)
T PRK15134 118 VLSLHRGMRREAARGEILNCLDRVGIRQAAKR----LTD--YPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSV 191 (529)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHCCCCChHHH----Hhh--CCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHH
Confidence 1 1111 2446677888777542111 111 45799999999999999999999976
Q ss_pred ---------c--c-cccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 ---------K--K-SGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~--~-~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
. . .++|| .|. + ..||||++|++|+++
T Consensus 192 ~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 192 QAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 1 1 25663 333 2 249999999999974
No 364
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.77 E-value=2.9e-19 Score=181.49 Aligned_cols=32 Identities=38% Similarity=0.437 Sum_probs=30.1
Q ss_pred CCccccceeeEEeCCcEEEEEcCCCCChHHHH
Q psy845 450 WPLVLANVSFRINHGENIGIVGRTGAGKSSLL 481 (677)
Q Consensus 450 ~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi 481 (677)
..++|+|+||++++||++||+||||||||||+
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHH
Confidence 34699999999999999999999999999996
No 365
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.76 E-value=6.7e-15 Score=145.01 Aligned_cols=203 Identities=22% Similarity=0.300 Sum_probs=164.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccc-c-ch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy845 178 RSVYLRSVFQNMWSMLFAFLMICFVFPWFA-L-PL---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPW 252 (677)
Q Consensus 178 ~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~-~-~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~ 252 (677)
..+..+++.+++..++|+|.+.... .||+ . ++ .++++|.+.+++.+. ..+..++.++..+++.++.++..+|+
T Consensus 65 ~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~g~l~~~i~~d~~~i~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~ 142 (275)
T PF00664_consen 65 SSRISQRIRKDLRKRLFEKLLRLPY-SYFDKNSSGELLSRITNDIEQIENFLS-SSLFQIISSIISIIFSLILLFFISWK 142 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSHH-HHHHHS-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-hhhhhhccccccccccccccccccccc-ccccccccccchhhhhhhcccccccc
Confidence 4556667777788899999999754 8884 3 33 666777777777654 45667888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 253 FALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSM 332 (677)
Q Consensus 253 lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~~ 332 (677)
+++++++..++...+...+.++.++..+..++..++..+.++|.++|+++||+|+.|+++.+++++..++..+...+...
T Consensus 143 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 222 (275)
T PF00664_consen 143 LALILLIILPLLFLISFIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAK 222 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhhHhhhhhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988899999999999999988888888889999999999999999999999999999999999988777766665
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHHH
Q psy845 333 AMRWLAVRIDVLAVI--AMAIITGLTV-AFHGSVSPALAGLALTYASHVTGLL 382 (677)
Q Consensus 333 ~~~~~~~~l~~l~~l--~~~l~~g~~l-v~~G~ls~g~l~~~l~~~~~l~~~l 382 (677)
...+.....+.+..+ +.++.+|.++ +.+|.+++|.+.+++.+...+.+|+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 223 IQALLSSISQFISYLSIVLILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 555555555544443 3345566667 8899999999999999988887774
No 366
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.76 E-value=2.2e-18 Score=168.14 Aligned_cols=62 Identities=27% Similarity=0.431 Sum_probs=57.4
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECC
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 499 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG 499 (677)
-++++++|..|.+. .--+|+||++.|||..||||+||||||||+++|.+-..|+.|+|.++.
T Consensus 6 LL~V~~lsk~Yg~~--~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~ 67 (258)
T COG4107 6 LLSVSGLSKLYGPG--KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRM 67 (258)
T ss_pred ceeehhhhhhhCCC--cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEc
Confidence 47889999999865 478999999999999999999999999999999999999999999854
No 367
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.75 E-value=2.5e-17 Score=186.26 Aligned_cols=140 Identities=31% Similarity=0.382 Sum_probs=109.2
Q ss_pred CccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 434 ~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
+.-++++|++++|+++ +++++|+||.|++|++||||||+|+|||||+|+|+|-..|.+|+|.++-. +
T Consensus 319 ~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~----v-------- 385 (530)
T COG0488 319 KLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET----V-------- 385 (530)
T ss_pred CeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc----e--------
Confidence 3468999999999765 57999999999999999999999999999999999999999999987632 1
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc-ccc-ccchhhccc
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP-VLF-NGTIRYNLD 591 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~-~LF-sgTIrENI~ 591 (677)
++||.+|+. .++ +.|+-|++.
T Consensus 386 ---------------------------------------------------------~igyf~Q~~~~l~~~~t~~d~l~ 408 (530)
T COG0488 386 ---------------------------------------------------------KIGYFDQHRDELDPDKTVLEELS 408 (530)
T ss_pred ---------------------------------------------------------EEEEEEehhhhcCccCcHHHHHH
Confidence 344444444 222 347788885
Q ss_pred cCC-CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 592 PFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 592 ~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
... +..+.++...+...+....-. .+ ....||||||-|+.+|+.++.+|.+|
T Consensus 409 ~~~~~~~e~~~r~~L~~f~F~~~~~------~~--~v~~LSGGEk~Rl~La~ll~~~pNvL 461 (530)
T COG0488 409 EGFPDGDEQEVRAYLGRFGFTGEDQ------EK--PVGVLSGGEKARLLLAKLLLQPPNLL 461 (530)
T ss_pred hhCccccHHHHHHHHHHcCCChHHH------hC--chhhcCHhHHHHHHHHHHhccCCCEE
Confidence 332 333677888888877653221 12 45789999999999999999999987
No 368
>KOG0059|consensus
Probab=99.74 E-value=2.1e-18 Score=205.85 Aligned_cols=175 Identities=26% Similarity=0.323 Sum_probs=139.6
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
..+..+|++..|+.... +.+++|+.+++||..|+-|+|||||||+++++.|...|++|++.++|.|++.-.
T Consensus 563 ~~~~~~~L~k~y~~~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~-------- 633 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVST-------- 633 (885)
T ss_pred ceEEEcceeeeecchhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCcccccc--------
Confidence 46889999999987644 999999999999999999999999999999999999999999999999987641
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~ 593 (677)
+..+.|+++||.||+..|+ ..|.||.+.+.
T Consensus 634 -------------------------------------------------~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~ 664 (885)
T KOG0059|consen 634 -------------------------------------------------DFQQVRKQLGYCPQFDALWEELTGREHLEFY 664 (885)
T ss_pred -------------------------------------------------chhhhhhhcccCCchhhhhhhccHHHHHHHH
Confidence 4556888999999998888 46999999643
Q ss_pred C---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc--------------
Q psy845 594 G---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK-------------- 652 (677)
Q Consensus 594 ~---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~-------------- 652 (677)
+ ... ++.+.+.++..++.+.... ...++|||+|.|+++|-|++.+|+++.
T Consensus 665 arlrG~~~~di~~~v~~ll~~~~L~~~~~~---------~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr 735 (885)
T KOG0059|consen 665 ARLRGLPRSDIGSAIEKLLRLVGLGPYANK---------QVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARR 735 (885)
T ss_pred HHHcCCChhHHHHHHHHHHHHcCChhhhcc---------chhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHH
Confidence 2 222 2336667777777655432 357999999999999999999998651
Q ss_pred ----------ccccc-e-ecc-cc----cccEEEEEeCCee
Q psy845 653 ----------KSGVN-I-TRP-VT----SCDKVLVMDNGQA 676 (677)
Q Consensus 653 ----------~~~~T-I-LsT-I~----~aDrIlVLd~GrI 676 (677)
..++- | +++ .. -|||+..|.+|++
T Consensus 736 ~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l 776 (885)
T KOG0059|consen 736 HLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQL 776 (885)
T ss_pred HHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCee
Confidence 12223 3 222 22 2999999999996
No 369
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.73 E-value=3.8e-18 Score=177.69 Aligned_cols=195 Identities=20% Similarity=0.161 Sum_probs=112.7
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHh-----c-CC----CCCccEEEECCEecccccHHHhhhhcccccCCc
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALF-----R-LV----ELSSGQIKIDDFDIASVELETLRSRLSVIPQDP 521 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~-----r-~y----~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~ 521 (677)
..|||+|++|+.|+.++|.|+||||||||++.++ + +. .|..++...+...+.+ +-+|.|.|
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---------~~~vdq~p 79 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDK---------VIVIDQSP 79 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCc---------eEEecCCc
Confidence 4799999999999999999999999999998663 2 22 2444444433333322 34555554
Q ss_pred cccccccccCCCCCchhHHHHHHhhhh-ccc-cccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCCCC-C
Q psy845 522 VLFNGIVGRTGAGKSSLLVALFRLVEL-SSG-QIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFGRC-H 597 (677)
Q Consensus 522 ~lf~~~~~~n~~~~~~~~~~~~~~~~~-~~g-~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~~~-s 597 (677)
.= +| -.||. .--.++.+. -.= -=.-.|.+++.+. -.+.|..++.... +.|+.||+.++... .
T Consensus 80 i~------~~--~rs~~-~ty~~~~~~ir~~fC~~C~G~r~~~~~-----l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~ 145 (261)
T cd03271 80 IG------RT--PRSNP-ATYTGVFDEIRELFCEVCKGKRYNRET-----LEVRYKGKSIADVLDMTVEEALEFFENIPK 145 (261)
T ss_pred CC------CC--CCCcH-HHHHHHHHHHHHhcCccccccccCHHH-----HhcCcCCCCHHHHhcCCHHHHHHHHHhhhh
Confidence 21 11 11111 111111110 000 0000111222111 1345555555443 67899998765432 2
Q ss_pred hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhcc---chhh-----------------------
Q psy845 598 DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRK---TKKK----------------------- 651 (677)
Q Consensus 598 deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~---p~IL----------------------- 651 (677)
.++..++++..++.... ++. ...+||||||||++||||+.++ |+++
T Consensus 146 ~~~~~~~L~~vgL~~l~------l~~--~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~ 217 (261)
T cd03271 146 IARKLQTLCDVGLGYIK------LGQ--PATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQR 217 (261)
T ss_pred HHHHHHHHHHcCCchhh------hcC--ccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 24455666666664321 111 4679999999999999999997 4544
Q ss_pred -cccccce------ecccccccEEEEE------eCCeeC
Q psy845 652 -KKSGVNI------TRPVTSCDKVLVM------DNGQAL 677 (677)
Q Consensus 652 -~~~~~TI------LsTI~~aDrIlVL------d~GrIV 677 (677)
...+.|+ +..++.||+|++| ++|+|+
T Consensus 218 l~~~g~tvIiitH~~~~i~~aD~ii~Lgp~~g~~~G~iv 256 (261)
T cd03271 218 LVDKGNTVVVIEHNLDVIKCADWIIDLGPEGGDGGGQVV 256 (261)
T ss_pred HHhCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEE
Confidence 1135662 2345679999999 899874
No 370
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.72 E-value=1.3e-17 Score=169.57 Aligned_cols=159 Identities=18% Similarity=0.199 Sum_probs=95.5
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCcc--------EEEECCEecccccH
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG--------QIKIDDFDIASVEL 507 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G--------~I~IdG~dI~~l~~ 507 (677)
.|+++|. .+|++. .++++++ |+.++|+||||||||||+++|+++..+..| .+..+|....
T Consensus 3 ~i~~~nf-ksy~~~--~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~---- 70 (243)
T cd03272 3 QVIIQGF-KSYKDQ--TVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPS---- 70 (243)
T ss_pred EEEEeCc-cCcccC--cccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCC----
Confidence 3666664 246543 4788876 899999999999999999999966433333 2222332211
Q ss_pred HHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchh
Q psy845 508 ETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIR 587 (677)
Q Consensus 508 ~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIr 587 (677)
..+..+.+++|++.-.. ... .+...+++.++++||++.++.
T Consensus 71 -~~~~~v~i~~~~~~~~~---------------------------------~~~-~~~~~i~r~ig~~~~~~~l~~---- 111 (243)
T cd03272 71 -VMSAYVEIIFDNSDNRF---------------------------------PID-KEEVRLRRTIGLKKDEYFLDK---- 111 (243)
T ss_pred -CceEEEEEEEEcCCCcc---------------------------------CCC-CCEEEEEEEEECCCCEEEECC----
Confidence 12334444444421100 000 012246778899998876653
Q ss_pred hccccCCCCChHHHHHHHHHccchhhHh--hhhccc-------CCCC--CCCCCChHHHHHHHHHHHHh----ccchhh
Q psy845 588 YNLDPFGRCHDTELWDALEKSHLKSKVV--TMRSKL-------DSDV--QGDQLSLGEKQLLCLARALL----RKTKKK 651 (677)
Q Consensus 588 ENI~~~~~~sdeeI~~Al~~a~l~efI~--~LP~Gl-------dT~v--~G~~LSGGQRQRIaIARALL----r~p~IL 651 (677)
...+.+|+.++++..++...-. ..|+|. +... .+.+||||||||++||||++ ++|+++
T Consensus 112 ------~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~il 184 (243)
T cd03272 112 ------KNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFY 184 (243)
T ss_pred ------eEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEE
Confidence 2346677888888877653210 012221 1111 57899999999999999996 356655
No 371
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.71 E-value=2.6e-17 Score=183.28 Aligned_cols=182 Identities=26% Similarity=0.347 Sum_probs=129.4
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccccc-HHHhhhhc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE-LETLRSRL 514 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~-~~~~~~~i 514 (677)
.++++|++.. ..++|+||++++||++||.|--|||+|-++++|.|..++.+|+|.+||.+++--+ .++++..+
T Consensus 263 ~l~v~~l~~~------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi 336 (500)
T COG1129 263 VLEVRNLSGG------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGI 336 (500)
T ss_pred EEEEecCCCC------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCC
Confidence 4667777642 2589999999999999999999999999999999999999999999999886554 34667777
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG 594 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~ 594 (677)
+|||+| |+.=|.++ +.+|++|+....
T Consensus 337 ~~v~ED------------------------------------------------Rk~~Gl~l------~~sI~~Ni~l~~ 362 (500)
T COG1129 337 AYVPED------------------------------------------------RKSEGLVL------DMSIAENITLAS 362 (500)
T ss_pred EeCCcc------------------------------------------------cccCcCcC------CCcHHHheehHh
Confidence 777766 22223332 457888885421
Q ss_pred --CCChH-HHHHHHHHccchhhHhhhhcccCCCC-CCCCCChHHHHHHHHHHHHhccchhh-------------------
Q psy845 595 --RCHDT-ELWDALEKSHLKSKVVTMRSKLDSDV-QGDQLSLGEKQLLCLARALLRKTKKK------------------- 651 (677)
Q Consensus 595 --~~sde-eI~~Al~~a~l~efI~~LP~GldT~v-~G~~LSGGQRQRIaIARALLr~p~IL------------------- 651 (677)
..+.. -+.+..+..-..+++.+|.-.-...- .-.+||||.+|++.|||.|..+|+++
T Consensus 363 l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~ 442 (500)
T COG1129 363 LRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYR 442 (500)
T ss_pred hhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHH
Confidence 11100 23334444455566666543222211 46799999999999999999999987
Q ss_pred -----cccccce---ec----ccccccEEEEEeCCeeC
Q psy845 652 -----KKSGVNI---TR----PVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----~~~~~TI---Ls----TI~~aDrIlVLd~GrIV 677 (677)
+.+|+.| .| .+..||||+||.+|+++
T Consensus 443 li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~ 480 (500)
T COG1129 443 LIRELAAEGKAILMISSELPELLGLSDRILVMREGRIV 480 (500)
T ss_pred HHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEE
Confidence 2345552 22 24469999999999985
No 372
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.70 E-value=8.2e-18 Score=188.44 Aligned_cols=145 Identities=34% Similarity=0.443 Sum_probs=108.7
Q ss_pred cccccCCCCCchhHHHHHHhhhhc----cccccccccchhhhhHHHHh----hhcccccccccc-cc--cchhhccc---
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELS----SGQIKIDDFDIASVELETLR----SRLSVIPQDPVL-FN--GTIRYNLD--- 591 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~----~g~i~~~~~~~~~~~~~~LR----~~I~~V~Qd~~L-Fs--gTIrENI~--- 591 (677)
|+||++||||||++.+|+|+.+++ +|+|.++|.|+-.++.+..| +.|++|+|||.= +| -||.+-|+
T Consensus 39 gIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~ 118 (539)
T COG1123 39 GIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREAL 118 (539)
T ss_pred EEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHH
Confidence 789999999999999999999998 89999999999888776654 589999999753 44 36665552
Q ss_pred -cCCCC----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc--------------
Q psy845 592 -PFGRC----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK-------------- 652 (677)
Q Consensus 592 -~~~~~----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~-------------- 652 (677)
..... ..++..+.++++++.+-... .-...+||||||||+.||+||..||+++.
T Consensus 119 ~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~-------~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~ 191 (539)
T COG1123 119 RLHGKGSRAEARKRAVELLEQVGLPDPERR-------DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQA 191 (539)
T ss_pred HHhccccHHHHHHHHHHHHHHcCCCChhhh-------ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHH
Confidence 22222 23446667888887654433 11467999999999999999999999771
Q ss_pred -----------ccccc---eecc---c-ccccEEEEEeCCeeC
Q psy845 653 -----------KSGVN---ITRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 653 -----------~~~~T---ILsT---I-~~aDrIlVLd~GrIV 677 (677)
..|.+ |.|. + +-||||+||++|++|
T Consensus 192 qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iV 234 (539)
T COG1123 192 QILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIV 234 (539)
T ss_pred HHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEE
Confidence 12222 1222 2 349999999999986
No 373
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.70 E-value=1e-17 Score=167.10 Aligned_cols=122 Identities=17% Similarity=0.145 Sum_probs=81.4
Q ss_pred cceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCC
Q psy845 455 ANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAG 534 (677)
Q Consensus 455 knISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~ 534 (677)
+++++++++| .++|+||||||||||+++|.++..|..|.. +++.+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~-~~~~~--------------------------------- 58 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKS-LRGEK--------------------------------- 58 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchh-hcccC---------------------------------
Confidence 5679999999 999999999999999999999987764431 12211
Q ss_pred CchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHHHHccchhhH
Q psy845 535 KSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKV 614 (677)
Q Consensus 535 ~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~a~l~efI 614 (677)
.|++..+|.+... ...++++++|+|++..+-+ ....+++.++++.
T Consensus 59 ---------------~~~~~~~~~~~~~---~~~~~~v~~vfq~~~~~~~----------~~~~~~~~~~l~~------- 103 (197)
T cd03278 59 ---------------MSDVIFAGSETRK---PANFAEVTLTFDNSDGRYS----------IISQGDVSEIIEA------- 103 (197)
T ss_pred ---------------HHHHhccCCCCCC---CCceEEEEEEEEcCCCcee----------EEehhhHHHHHhC-------
Confidence 2233333333321 1235789999999987711 1123455555555
Q ss_pred hhhhcccCCCCCCCCCChHHHHHHHHHHHHh----ccchhh
Q psy845 615 VTMRSKLDSDVQGDQLSLGEKQLLCLARALL----RKTKKK 651 (677)
Q Consensus 615 ~~LP~GldT~v~G~~LSGGQRQRIaIARALL----r~p~IL 651 (677)
++..+. ...+||||||||++||||+. ++|+++
T Consensus 104 ---~~~~~~--~~~~LS~G~kqrl~la~~l~~~~~~~~~il 139 (197)
T cd03278 104 ---PGKKVQ--RLSLLSGGEKALTALALLFAIFRVRPSPFC 139 (197)
T ss_pred ---CCcccc--chhhcCHHHHHHHHHHHHHHHhccCCCCEE
Confidence 111222 45689999999999999986 455654
No 374
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.70 E-value=2.1e-17 Score=160.77 Aligned_cols=62 Identities=35% Similarity=0.499 Sum_probs=54.4
Q ss_pred EEEEeeeEEeC----CC-CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEEC
Q psy845 437 IKFKNVSLRYR----DN-WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKID 498 (677)
Q Consensus 437 I~fknVsFsY~----~~-~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~Id 498 (677)
+.++||+.++. ++ .-+|++|+||+++.||++.+=|||||||||+++.|-+=|.|++|+|.+.
T Consensus 5 l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~ 71 (235)
T COG4778 5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVR 71 (235)
T ss_pred eeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEE
Confidence 66778876662 22 3479999999999999999999999999999999999999999999984
No 375
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.68 E-value=3.5e-17 Score=164.43 Aligned_cols=134 Identities=20% Similarity=0.128 Sum_probs=84.1
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEe-CCcEEEEEcCCCCChHHHHHHHh-cCCCCCccEEEECCEecccccHHHhhhh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRIN-HGENIGIVGRTGAGKSSLLVALF-RLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~-~GE~VAIVGpSGSGKSTLi~LL~-r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
.|+++|+. +|.+. ++++|+.. +||.++|+|||||||||++++|. .+|.+..+....+ .....+
T Consensus 5 ~i~l~nf~-~y~~~-----~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~-------- 69 (213)
T cd03279 5 KLELKNFG-PFREE-----QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVF-------- 69 (213)
T ss_pred EEEEECCc-CcCCc-----eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHh--------
Confidence 58899998 77643 45667654 59999999999999999999999 4666665555443 111111
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccC
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPF 593 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~ 593 (677)
.....+..+++++|++ +....+.+..
T Consensus 70 --------------------------------------------------~~~~~~~~v~~~f~~~----~~~~~~~r~~ 95 (213)
T cd03279 70 --------------------------------------------------APGEDTAEVSFTFQLG----GKKYRVERSR 95 (213)
T ss_pred --------------------------------------------------cCCCccEEEEEEEEEC----CeEEEEEEec
Confidence 1122345677777776 3333344332
Q ss_pred CCCChHHHHHH--HHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccc
Q psy845 594 GRCHDTELWDA--LEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKT 648 (677)
Q Consensus 594 ~~~sdeeI~~A--l~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p 648 (677)
..+.++..+. ++..++.+++. . .+.+||||||||+++|||+..+|
T Consensus 96 -gl~~~~~~~~~~l~~g~l~~~l~-------~--~~~~lS~G~~~r~~la~al~~~p 142 (213)
T cd03279 96 -GLDYDQFTRIVLLPQGEFDRFLA-------R--PVSTLSGGETFLASLSLALALSE 142 (213)
T ss_pred -CCCHHHHHHhhhhhhcchHHHhc-------C--CccccCHHHHHHHHHHHHHHhHH
Confidence 3344444332 22222333321 1 56799999999999999998643
No 376
>PRK13409 putative ATPase RIL; Provisional
Probab=99.68 E-value=2.1e-17 Score=189.71 Aligned_cols=140 Identities=23% Similarity=0.260 Sum_probs=107.6
Q ss_pred eeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCC
Q psy845 441 NVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQD 520 (677)
Q Consensus 441 nVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~ 520 (677)
+++.+|+++ ..+|+|++ ++++||++
T Consensus 78 ~~~~~yg~~-~~~L~~l~-~i~~Gev~----------------------------------------------------- 102 (590)
T PRK13409 78 EPVHRYGVN-GFKLYGLP-IPKEGKVT----------------------------------------------------- 102 (590)
T ss_pred CceEEecCC-ceeEecCC-cCCCCCEE-----------------------------------------------------
Confidence 488999754 35899999 89999843
Q ss_pred ccccccccccCCCCCchhHHHHHHhhhhcccccc-----------ccccchhhhhHH--HHhh----hcccccccccccc
Q psy845 521 PVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIK-----------IDDFDIASVELE--TLRS----RLSVIPQDPVLFN 583 (677)
Q Consensus 521 ~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~-----------~~~~~~~~~~~~--~LR~----~I~~V~Qd~~LFs 583 (677)
|.+|.||||||||+++|.|+++|++|+|. ++|.++.+...+ ..+. .+.+++|.|.+|.
T Consensus 103 -----gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~ 177 (590)
T PRK13409 103 -----GILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFK 177 (590)
T ss_pred -----EEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhhhc
Confidence 66899999999999999999999999997 899888754321 1122 3456666777888
Q ss_pred cchhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 584 GTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 584 gTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
+|++||+... ...+++.++++..++.+.. |. ...+||||||||++||||++++|+++
T Consensus 178 ~tv~e~l~~~--~~~~~~~~~l~~l~l~~~~-------~~--~~~~LSgGe~qrv~ia~al~~~p~ll 234 (590)
T PRK13409 178 GKVRELLKKV--DERGKLDEVVERLGLENIL-------DR--DISELSGGELQRVAIAAALLRDADFY 234 (590)
T ss_pred chHHHHHHhh--hHHHHHHHHHHHcCCchhh-------cC--ChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999642 1234567777777765432 22 34689999999999999999999976
No 377
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.65 E-value=2.7e-16 Score=172.93 Aligned_cols=180 Identities=23% Similarity=0.349 Sum_probs=127.7
Q ss_pred CccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEec-ccccHHH-hh
Q psy845 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI-ASVELET-LR 511 (677)
Q Consensus 434 ~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI-~~l~~~~-~~ 511 (677)
..-++++|++..=+.+ .+.++|+||++++||++||.|-+|-|-+-|+.+|+|+..|.+|+|.++|.|+ ...++.+ .+
T Consensus 255 ~~vL~V~~L~v~~~~~-~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~ 333 (501)
T COG3845 255 EVVLEVEDLSVKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRR 333 (501)
T ss_pred CeEEEEeeeEeecCCC-CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHh
Confidence 3458999999864332 4689999999999999999999999999999999999999999999999997 4444333 35
Q ss_pred hhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccc
Q psy845 512 SRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLD 591 (677)
Q Consensus 512 ~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~ 591 (677)
..+++||+| |.+-|.|+ +.|+.||+.
T Consensus 334 ~G~~~VPed------------------------------------------------R~~~Glv~------~~sl~eN~v 359 (501)
T COG3845 334 LGLAYVPED------------------------------------------------RHGHGLVL------DLSLAENLV 359 (501)
T ss_pred cCCccCChh------------------------------------------------hccCcccc------CccHHHHhh
Confidence 567777765 22233333 457889985
Q ss_pred cCCC----------CChHHHHHHHHHccchhhHhhhhcccCCCC-----CCCCCChHHHHHHHHHHHHhccchhhc----
Q psy845 592 PFGR----------CHDTELWDALEKSHLKSKVVTMRSKLDSDV-----QGDQLSLGEKQLLCLARALLRKTKKKK---- 652 (677)
Q Consensus 592 ~~~~----------~sdeeI~~Al~~a~l~efI~~LP~GldT~v-----~G~~LSGGQRQRIaIARALLr~p~IL~---- 652 (677)
+... ....++.+ +..++-+.+|-+- ...+||||+.||+-+||-+.++|+++.
T Consensus 360 L~~~~~~~~~~~g~l~~~~i~~---------~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qP 430 (501)
T COG3845 360 LGRHDKKPFSRGGFLDRRAIRK---------FARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQP 430 (501)
T ss_pred hhhccccccccccccCHHHHHH---------HHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCC
Confidence 3211 12233332 2223333333322 467999999999999999999999871
Q ss_pred --------------------ccccce------ecc-cccccEEEEEeCCeeC
Q psy845 653 --------------------KSGVNI------TRP-VTSCDKVLVMDNGQAL 677 (677)
Q Consensus 653 --------------------~~~~TI------LsT-I~~aDrIlVLd~GrIV 677 (677)
.+|+-| +.- ..-||||.||.+|+++
T Consensus 431 TrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~ 482 (501)
T COG3845 431 TRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIV 482 (501)
T ss_pred CccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCcee
Confidence 123332 222 3459999999999985
No 378
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.62 E-value=3e-16 Score=142.98 Aligned_cols=75 Identities=17% Similarity=0.187 Sum_probs=68.9
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccC
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRT 531 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n 531 (677)
++|+++||++++||.++|+||||||||||++++. +|++.++|.|+..+
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~-------------------------- 50 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEI-------------------------- 50 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHh--------------------------
Confidence 5899999999999999999999999999999987 89999999998877
Q ss_pred CCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcccc
Q psy845 532 GAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDP 592 (677)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~ 592 (677)
+.++.++..+++||+ +|++||+|||.+
T Consensus 51 --------------------------------~~~~~~~~~~~~~q~--lf~~ti~~Ni~~ 77 (107)
T cd00820 51 --------------------------------REDSKDELIGRNPEL--GLEIRLRLNIFL 77 (107)
T ss_pred --------------------------------hhhhcCCEEEEechh--cchhhHHhhcee
Confidence 667778888889888 999999999974
No 379
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=5e-16 Score=179.82 Aligned_cols=161 Identities=20% Similarity=0.252 Sum_probs=109.1
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+++||+++|++. .+|+|+||+|++||++
T Consensus 2 i~i~nls~~~g~~--~~l~~vs~~i~~Ge~v------------------------------------------------- 30 (638)
T PRK10636 2 IVFSSLQIRRGVR--VLLDNATATINPGQKV------------------------------------------------- 30 (638)
T ss_pred EEEEEEEEEeCCc--eeecCcEEEECCCCEE-------------------------------------------------
Confidence 6899999999753 5999999999999954
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccC---
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPF--- 593 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~--- 593 (677)
|.+|.||||||||+++|.|+.+||+|+|.++|.. .++|++|++..+..|..+++.-.
T Consensus 31 ---------~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~~~~q~~~~~~~~~~~~v~~~~~~ 90 (638)
T PRK10636 31 ---------GLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLAWVNQETPALPQPALEYVIDGDRE 90 (638)
T ss_pred ---------EEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEEEEecCCCCCCCCHHHHHHHhhHH
Confidence 5689999999999999999999999999998853 25555554333333333322100
Q ss_pred -------------------------------CCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHH
Q psy845 594 -------------------------------GRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLAR 642 (677)
Q Consensus 594 -------------------------------~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIAR 642 (677)
+...++++.++++..|+.+. -.+. ...+||||||||++|||
T Consensus 91 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~------~~~~--~~~~LSgGerqRv~LA~ 162 (638)
T PRK10636 91 YRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNE------QLER--PVSDFSGGWRMRLNLAQ 162 (638)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCch------hhcC--chhhcCHHHHHHHHHHH
Confidence 00001222333333332100 0111 45789999999999999
Q ss_pred HHhccchhhc---------------------ccccce---ecc---c-ccccEEEEEeCCee
Q psy845 643 ALLRKTKKKK---------------------KSGVNI---TRP---V-TSCDKVLVMDNGQA 676 (677)
Q Consensus 643 ALLr~p~IL~---------------------~~~~TI---LsT---I-~~aDrIlVLd~GrI 676 (677)
||+.+|+++. .-+.|| .|. + +-||+|++|++|++
T Consensus 163 aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i 224 (638)
T PRK10636 163 ALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSL 224 (638)
T ss_pred HHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEE
Confidence 9999999771 113342 222 2 24899999999997
No 380
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.60 E-value=5.6e-16 Score=156.44 Aligned_cols=42 Identities=24% Similarity=0.436 Sum_probs=36.2
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALF 485 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~ 485 (677)
+++++|.. +|.+. .+++++++ +.+||+|||||||||++++|.
T Consensus 5 ~l~l~nfk-~~~~~--~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~ 46 (212)
T cd03274 5 KLVLENFK-SYAGE--QVIGPFHK-----SFSAIVGPNGSGKSNVIDSML 46 (212)
T ss_pred EEEEECcc-cCCCC--eeeccCCC-----CeEEEECCCCCCHHHHHHHHH
Confidence 57788876 78643 58999987 899999999999999999997
No 381
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.57 E-value=3.2e-15 Score=153.72 Aligned_cols=57 Identities=19% Similarity=0.370 Sum_probs=41.6
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCC-ccEEEECCE
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS-SGQIKIDDF 500 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~-~G~I~IdG~ 500 (677)
+|+++|. .+|.+. .++.++ . ...++||||||||||||+++|+++..|+ .|++..+|.
T Consensus 5 ~~~~~~f-~~~~~~--~~~~~~----~-~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~ 62 (251)
T cd03273 5 EIILDGF-KSYATR--TVISGF----D-PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNL 62 (251)
T ss_pred EEEEeCc-cccCcC--EeeccC----C-CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCH
Confidence 4677776 456432 122222 2 5599999999999999999999999886 458888765
No 382
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.57 E-value=4.9e-16 Score=151.90 Aligned_cols=166 Identities=23% Similarity=0.289 Sum_probs=122.6
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
+.++||+..- -|-.+|.++..||.+-+|||+|||||||+-.++|+. |-+|+|.++|.|+...
T Consensus 4 ~qln~v~~~t------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~----------- 65 (248)
T COG4138 4 MQLNDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAW----------- 65 (248)
T ss_pred eeeccccccc------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHH-----------
Confidence 4566765432 366789999999999999999999999999999987 7899999999999988
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccc-cccccccchhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQ-DPVLFNGTIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Q-d~~LFsgTIrENI~~~~- 594 (677)
+..++-++=+|..| ..-.|...+-..+++..
T Consensus 66 -----------------------------------------------~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP 98 (248)
T COG4138 66 -----------------------------------------------SATELARHRAYLSQQQTPPFAMPVWHYLTLHQP 98 (248)
T ss_pred -----------------------------------------------hHhHHHHHHHHHhhccCCcchhhhhhhhhhcCc
Confidence 44455555555554 34456677777776532
Q ss_pred -CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------------
Q psy845 595 -RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------------- 651 (677)
Q Consensus 595 -~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------------- 651 (677)
+.-.+++.+++++.+++|.+-+ .-.+|||||.||+-+|-..++=.|..
T Consensus 99 ~~~~a~~i~~i~~~L~l~DKL~R---------s~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~ 169 (248)
T COG4138 99 DKTRTELLNDVAGALALDDKLGR---------STNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQS 169 (248)
T ss_pred hHHHHHHHHHHHhhhcccchhhh---------hhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHH
Confidence 2233567777777777664322 24689999999999998887632211
Q ss_pred ---------cccccce-------ecccccccEEEEEeCCee
Q psy845 652 ---------KKSGVNI-------TRPVTSCDKVLVMDNGQA 676 (677)
Q Consensus 652 ---------~~~~~TI-------LsTI~~aDrIlVLd~GrI 676 (677)
..+|++| -+|+++||++..++.|++
T Consensus 170 aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l 210 (248)
T COG4138 170 ALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKL 210 (248)
T ss_pred HHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeE
Confidence 2356663 468999999999999986
No 383
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.53 E-value=2.8e-14 Score=170.63 Aligned_cols=43 Identities=30% Similarity=0.405 Sum_probs=37.6
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALF 485 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~ 485 (677)
.++++|++. ..|+|+|++|++||.++|+|+||||||||++-++
T Consensus 614 ~L~v~~l~~-------~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l 656 (943)
T PRK00349 614 FLKLKGARE-------NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETL 656 (943)
T ss_pred eEEecCCcc-------CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHH
Confidence 478888851 3699999999999999999999999999998764
No 384
>KOG0927|consensus
Probab=99.53 E-value=9.1e-15 Score=162.05 Aligned_cols=143 Identities=23% Similarity=0.324 Sum_probs=107.9
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
.-|.++||+|+|+++ +.+.+++||-|..++++|+|||+|+|||||+|++.|...|+.|.+.-.-+.. +
T Consensus 388 pvi~~~nv~F~y~~~-~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~-----------~ 455 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDN-PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNK-----------L 455 (614)
T ss_pred CeEEEeccccCCCCc-chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccccc-----------c
Confidence 468999999999876 4799999999999999999999999999999999999999999886432221 1
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcccc-C
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDP-F 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~-~ 593 (677)
++-.| | .+|..-.+.|.-||+.+ +
T Consensus 456 ~~y~Q---------------------------------------------------h----~~e~ldl~~s~le~~~~~~ 480 (614)
T KOG0927|consen 456 PRYNQ---------------------------------------------------H----LAEQLDLDKSSLEFMMPKF 480 (614)
T ss_pred hhhhh---------------------------------------------------h----hHhhcCcchhHHHHHHHhc
Confidence 10011 1 01223345566667643 2
Q ss_pred C-CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc
Q psy845 594 G-RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK 652 (677)
Q Consensus 594 ~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~ 652 (677)
. .-..+++...+...|+....+.. .-++||+|||.|++.||.+++.|.++.
T Consensus 481 ~~~~~~e~~r~ilgrfgLtgd~q~~--------p~~~LS~Gqr~rVlFa~l~~kqP~lLl 532 (614)
T KOG0927|consen 481 PDEKELEEMRSILGRFGLTGDAQVV--------PMSQLSDGQRRRVLFARLAVKQPHLLL 532 (614)
T ss_pred cccchHHHHHHHHHHhCCCcccccc--------chhhcccccchhHHHHHHHhcCCcEEE
Confidence 3 34567788899999887443322 456999999999999999999999883
No 385
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.50 E-value=5.9e-14 Score=174.87 Aligned_cols=40 Identities=25% Similarity=0.413 Sum_probs=36.0
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHH
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLV 482 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~ 482 (677)
.++++|++. ..|+|+|++|++||.++|.|+||||||||++
T Consensus 600 ~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~ 639 (1809)
T PRK00635 600 TLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLIN 639 (1809)
T ss_pred eEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHH
Confidence 478888752 3799999999999999999999999999999
No 386
>KOG0065|consensus
Probab=99.49 E-value=8.4e-15 Score=175.30 Aligned_cols=169 Identities=24% Similarity=0.266 Sum_probs=122.3
Q ss_pred EEEeeeEEe--CCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC--CCccEEEECCEecccccHHHhhhh
Q psy845 438 KFKNVSLRY--RDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE--LSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 438 ~fknVsFsY--~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~--p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
..+|+.+.- .++....|+|||=-++||..+|++|+||||||||++.|+|=.+ ..+|+|+|||.+..+
T Consensus 789 ~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q--------- 859 (1391)
T KOG0065|consen 789 YWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ--------- 859 (1391)
T ss_pred EEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---------
Confidence 344444332 2345579999999999999999999999999999999998643 356888999988643
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccc-cccccccchhhcccc
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQ-DPVLFNGTIRYNLDP 592 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Q-d~~LFsgTIrENI~~ 592 (677)
+..++.+|||.| |-++-.-||||-|.+
T Consensus 860 ----------------------------------------------------~tF~R~~GYvqQ~DiH~~~~TVrESL~f 887 (1391)
T KOG0065|consen 860 ----------------------------------------------------ETFARVSGYVEQQDIHSPELTVRESLRF 887 (1391)
T ss_pred ----------------------------------------------------hhhccccceeecccccCcccchHHHHHH
Confidence 345566666654 445557899999854
Q ss_pred C------CCCChHH----HHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccch-hh--------
Q psy845 593 F------GRCHDTE----LWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTK-KK-------- 651 (677)
Q Consensus 593 ~------~~~sdee----I~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~-IL-------- 651 (677)
. .+.+++| ++++.+..++.+.-++ .| .|..||.+||.|+.||=-|+.||+ |+
T Consensus 888 SA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~da-------iVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSG 960 (1391)
T KOG0065|consen 888 SAALRLPKEVSDEEKYEYVEEVIELLELKEYADA-------LVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSG 960 (1391)
T ss_pred HHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhh-------hccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCC
Confidence 2 2445544 5666777666655433 23 478999999999999999999994 43
Q ss_pred ----------------cccccceecc--------cccccEEEEEeCC
Q psy845 652 ----------------KKSGVNITRP--------VTSCDKVLVMDNG 674 (677)
Q Consensus 652 ----------------~~~~~TILsT--------I~~aDrIlVLd~G 674 (677)
..+|+||+=| .+..|+++.|++|
T Consensus 961 LDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrG 1007 (1391)
T KOG0065|consen 961 LDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRG 1007 (1391)
T ss_pred ccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcC
Confidence 2467775322 3568999999876
No 387
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.48 E-value=3.4e-14 Score=142.52 Aligned_cols=38 Identities=26% Similarity=0.226 Sum_probs=32.7
Q ss_pred eeEEeCCcEEEEEcCCCCChHHHHHHHh----cCCCCCccEEE
Q psy845 458 SFRINHGENIGIVGRTGAGKSSLLVALF----RLVELSSGQIK 496 (677)
Q Consensus 458 Sl~I~~GE~VAIVGpSGSGKSTLi~LL~----r~y~p~~G~I~ 496 (677)
++++.+| +++|+||||||||||+++|. |...|.+|.+.
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~ 58 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGA 58 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCccccccc
Confidence 4566777 99999999999999999994 88888887766
No 388
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.46 E-value=5.7e-14 Score=151.52 Aligned_cols=146 Identities=27% Similarity=0.366 Sum_probs=109.3
Q ss_pred cccccCCCCCchhHHHHHHhhhh-----ccccccccccchhhhhHHHHhh----hccccccccccc-c--cchhhc----
Q psy845 526 GIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIASVELETLRS----RLSVIPQDPVLF-N--GTIRYN---- 589 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~-----~~g~i~~~~~~~~~~~~~~LR~----~I~~V~Qd~~LF-s--gTIrEN---- 589 (677)
+.||++|+|||-.+..+|||.+- -+|+|.++|+|.-..+.+++|+ +|++|+|||.-- | -||..-
T Consensus 40 AlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~ 119 (534)
T COG4172 40 ALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEV 119 (534)
T ss_pred EEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHH
Confidence 56899999999999999999876 5789999999999999988887 899999999642 2 244443
Q ss_pred cccCC----CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhccc-----------
Q psy845 590 LDPFG----RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKKKS----------- 654 (677)
Q Consensus 590 I~~~~----~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~~~----------- 654 (677)
|.... +.-.+++.+.++.+|+.+-=.. ++. ...+||||||||+.||-|+..+|+++...
T Consensus 120 l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~r----l~~--yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQ 193 (534)
T COG4172 120 LRLHRGLSRAAARARALELLELVGIPEPEKR----LDA--YPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQ 193 (534)
T ss_pred HHHHhcccHHHHHHHHHHHHHHcCCCchhhh----hhh--CCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhH
Confidence 33332 3345667788888888653222 111 46799999999999999999999987211
Q ss_pred --------------ccc---e---ecccc-cccEEEEEeCCeeC
Q psy845 655 --------------GVN---I---TRPVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 655 --------------~~T---I---LsTI~-~aDrIlVLd~GrIV 677 (677)
|.. | ++.++ -||||+||.+|++|
T Consensus 194 aQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv 237 (534)
T COG4172 194 AQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237 (534)
T ss_pred HHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence 111 2 22333 39999999999986
No 389
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.44 E-value=8.6e-14 Score=143.10 Aligned_cols=55 Identities=22% Similarity=0.343 Sum_probs=39.8
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECC
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 499 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG 499 (677)
.|+++|. .+|.+. .. +...+| .++|+||||||||||+.+|++...++.|++..++
T Consensus 3 ~i~l~nf-~~~~~~--~~-----~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~ 57 (247)
T cd03275 3 RLELENF-KSYKGR--HV-----IGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKN 57 (247)
T ss_pred EEEEECc-cccCCC--ee-----ecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccc
Confidence 4677775 446432 11 222234 9999999999999999999999988888776543
No 390
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.43 E-value=6.2e-13 Score=158.91 Aligned_cols=40 Identities=30% Similarity=0.379 Sum_probs=36.2
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHH
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLV 482 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~ 482 (677)
.++++|++. ..|+|+|++|++||.+||+|+||||||||++
T Consensus 612 ~l~l~~~~~-------~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~ 651 (924)
T TIGR00630 612 FLTLKGARE-------NNLKNITVSIPLGLFTCITGVSGSGKSTLIN 651 (924)
T ss_pred eEEEEeCcc-------CCcCceEEEEeCCCEEEEECCCCCCHHHHHH
Confidence 488888862 2699999999999999999999999999998
No 391
>KOG0927|consensus
Probab=99.42 E-value=3.5e-13 Score=149.62 Aligned_cols=61 Identities=25% Similarity=0.453 Sum_probs=54.0
Q ss_pred CCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEE
Q psy845 433 RQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495 (677)
Q Consensus 433 ~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I 495 (677)
....|.++|++++|++. ++++|+.|++++|+++||+|++||||||+++.+.+=..|..-++
T Consensus 72 ~s~dvk~~sls~s~~g~--~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~ 132 (614)
T KOG0927|consen 72 ISRDVKIESLSLSFHGV--ELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHI 132 (614)
T ss_pred ccccceeeeeeeccCCc--eeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCccc
Confidence 44579999999999875 69999999999999999999999999999999999888755433
No 392
>KOG2355|consensus
Probab=99.37 E-value=3e-12 Score=128.32 Aligned_cols=68 Identities=19% Similarity=0.307 Sum_probs=62.9
Q ss_pred CccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEec
Q psy845 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 502 (677)
Q Consensus 434 ~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI 502 (677)
+..|+++|+.|+|+..+ |..-|+|+++++|.+.-+||.+|||||||+|+|.|=.-.-.|.|.+.|.+-
T Consensus 11 ~~aievsgl~f~y~~~d-P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~Vlgrsa 78 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSD-PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSA 78 (291)
T ss_pred cceEEEeccEEecccCC-ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCc
Confidence 56799999999998765 699999999999999999999999999999999998888889999999874
No 393
>KOG0062|consensus
Probab=99.34 E-value=3.7e-12 Score=140.93 Aligned_cols=170 Identities=18% Similarity=0.234 Sum_probs=124.6
Q ss_pred CccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 434 ~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
.+.+++.+|+|.|+++..+.++++|+.++.-+++++||++|+||||+++++.+-.+|..|.+.+.+ |.+
T Consensus 360 ~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 456899999999988755799999999999999999999999999999999999999999887764 445
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccC
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPF 593 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~ 593 (677)
+++-.|.+ .+.+..+++-|.- .+-..+
T Consensus 429 i~~f~Qhh-------------------------------------------vd~l~~~v~~vd~---------~~~~~p- 455 (582)
T KOG0062|consen 429 IKYFAQHH-------------------------------------------VDFLDKNVNAVDF---------MEKSFP- 455 (582)
T ss_pred ecchhHhh-------------------------------------------hhHHHHHhHHHHH---------HHHhCC-
Confidence 66666653 2222222221111 111112
Q ss_pred CCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhcc--------------------
Q psy845 594 GRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKKK-------------------- 653 (677)
Q Consensus 594 ~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~~-------------------- 653 (677)
..++||+++.|...|+...+..- .-..||||||-|+++|-+-..+|.++.+
T Consensus 456 -G~~~ee~r~hl~~~Gl~g~la~~--------si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~ 526 (582)
T KOG0062|consen 456 -GKTEEEIRRHLGSFGLSGELALQ--------SIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALK 526 (582)
T ss_pred -CCCHHHHHHHHHhcCCCchhhhc--------cccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHH
Confidence 23789999999998887654332 2357999999999999999999997722
Q ss_pred --cccc--eecc---cc-cccEEEEEeCCee
Q psy845 654 --SGVN--ITRP---VT-SCDKVLVMDNGQA 676 (677)
Q Consensus 654 --~~~T--ILsT---I~-~aDrIlVLd~GrI 676 (677)
+|-- |.|. +. -|+.+.|.+||++
T Consensus 527 ~F~GGVv~VSHd~~fi~~~c~E~Wvve~g~v 557 (582)
T KOG0062|consen 527 NFNGGVVLVSHDEEFISSLCKELWVVEDGKV 557 (582)
T ss_pred hcCCcEEEEECcHHHHhhcCceeEEEcCCcE
Confidence 1111 1222 22 3999999999987
No 394
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.31 E-value=2.4e-08 Score=114.38 Aligned_cols=34 Identities=38% Similarity=0.734 Sum_probs=32.3
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|+||||||||+++|+|+++|++|+|++||.|
T Consensus 373 aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~ 406 (582)
T PRK11176 373 ALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHD 406 (582)
T ss_pred EEECCCCCCHHHHHHHHHhccCCCCceEEECCEE
Confidence 5689999999999999999999999999999976
No 395
>KOG0062|consensus
Probab=99.29 E-value=4.6e-12 Score=140.21 Aligned_cols=144 Identities=28% Similarity=0.390 Sum_probs=94.2
Q ss_pred CccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEe--cccccHHHhh
Q psy845 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD--IASVELETLR 511 (677)
Q Consensus 434 ~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~d--I~~l~~~~~~ 511 (677)
..+|..+|.+.+|+++ ..|++-|+++..|.++|+|||+|+|||||+++|.. |.|..-.++ .+....+
T Consensus 78 ~~Di~~~~fdLa~G~k--~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~--- 146 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGGK--ILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTE--- 146 (582)
T ss_pred ccceeeeeeeeeecch--hhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchH---
Confidence 4579999999999864 58999999999999999999999999999999998 333221110 1110000
Q ss_pred hhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccc
Q psy845 512 SRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLD 591 (677)
Q Consensus 512 ~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~ 591 (677)
..+++ ++-+..|. -++.||..|-.+
T Consensus 147 -----------------------------------~~~~~-----------l~~D~~~~--dfl~~e~~l~~~------- 171 (582)
T KOG0062|consen 147 -----------------------------------ALQSV-----------LESDTERL--DFLAEEKELLAG------- 171 (582)
T ss_pred -----------------------------------HHhhh-----------hhccHHHH--HHHHhhhhhhcc-------
Confidence 00000 01111111 122333222211
Q ss_pred cCCCCChHHHHH-HHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhcccc
Q psy845 592 PFGRCHDTELWD-ALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKKKSG 655 (677)
Q Consensus 592 ~~~~~sdeeI~~-Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~~~~ 655 (677)
.+.+||.+ ++.-.|..+.....| -..||||=|-|+++|||++++|++|.+..
T Consensus 172 ----~~l~ei~~~~L~glGFt~emq~~p--------t~slSGGWrMrlaLARAlf~~pDlLLLDE 224 (582)
T KOG0062|consen 172 ----LTLEEIYDKILAGLGFTPEMQLQP--------TKSLSGGWRMRLALARALFAKPDLLLLDE 224 (582)
T ss_pred ----chHHHHHHHHHHhCCCCHHHHhcc--------ccccCcchhhHHHHHHHHhcCCCEEeecC
Confidence 14566666 777777776665554 45899999999999999999999984433
No 396
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.29 E-value=1.8e-11 Score=134.00 Aligned_cols=35 Identities=34% Similarity=0.624 Sum_probs=32.5
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccE
Q psy845 460 RINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494 (677)
Q Consensus 460 ~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~ 494 (677)
+|..||.++++||+|-||||++++|+|..+|++|+
T Consensus 363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~ 397 (591)
T COG1245 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS 397 (591)
T ss_pred eeecceEEEEECCCCcchHHHHHHHhccccCCCCC
Confidence 45667899999999999999999999999999997
No 397
>KOG0065|consensus
Probab=99.26 E-value=1.8e-12 Score=155.63 Aligned_cols=164 Identities=21% Similarity=0.280 Sum_probs=117.0
Q ss_pred CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCC---ccEEEECCEecccccHHHhhhhcccccCCccccccc
Q psy845 451 PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS---SGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGI 527 (677)
Q Consensus 451 ~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~---~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~ 527 (677)
-.+|+|+|.-++|||.+-+.||.|||||||++.|+|-.+-. .|+|..||+|.++.
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~---------------------- 185 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEF---------------------- 185 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccc----------------------
Confidence 46999999999999999999999999999999999976642 46899999998876
Q ss_pred cccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC-------CCChH
Q psy845 528 VGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG-------RCHDT 599 (677)
Q Consensus 528 ~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~-------~~sde 599 (677)
.. ++.++|.+|+..-| ..|+||-+++.. ++++-
T Consensus 186 ------------------------------------~~---~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~~~ 226 (1391)
T KOG0065|consen 186 ------------------------------------VP---KKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYDEV 226 (1391)
T ss_pred ------------------------------------cc---CceEEeccccccccceeEEeehhhHHHhccCCccccccc
Confidence 22 55667777665555 679999996432 22211
Q ss_pred HHHHHHHHccchhh---HhhhhcccCCCC---CCCCCChHHHHHHHHHHHHhccchhhc---------------------
Q psy845 600 ELWDALEKSHLKSK---VVTMRSKLDSDV---QGDQLSLGEKQLLCLARALLRKTKKKK--------------------- 652 (677)
Q Consensus 600 eI~~Al~~a~l~ef---I~~LP~GldT~v---~G~~LSGGQRQRIaIARALLr~p~IL~--------------------- 652 (677)
+-.+ +.+...|. +-.|....||.+ -....|||||.|+++|-++..+++++-
T Consensus 227 ~R~e--~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr 304 (1391)
T KOG0065|consen 227 SRRE--KLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALR 304 (1391)
T ss_pred cHHH--HHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHH
Confidence 1111 11112222 223556788888 357899999999999999999998771
Q ss_pred ----ccccc-e-------ecccccccEEEEEeCCeeC
Q psy845 653 ----KSGVN-I-------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 653 ----~~~~T-I-------LsTI~~aDrIlVLd~GrIV 677 (677)
..+.| + ..+..-.|+|.+|.+|++|
T Consensus 305 ~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~i 341 (1391)
T KOG0065|consen 305 QLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQI 341 (1391)
T ss_pred HHHhhhcceEEEEeccCChHHHHhhhheeeeeccceE
Confidence 12222 1 1234458999999999975
No 398
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.26 E-value=1.8e-08 Score=114.91 Aligned_cols=34 Identities=35% Similarity=0.496 Sum_probs=32.1
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|+||||||||++.|+|+|+|++|+|++||.|
T Consensus 353 aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~ 386 (547)
T PRK10522 353 FLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKP 386 (547)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE
Confidence 5689999999999999999999999999999975
No 399
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.25 E-value=3.1e-08 Score=116.37 Aligned_cols=34 Identities=32% Similarity=0.488 Sum_probs=32.3
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|+||||||||+++|+|+|+|++|+|++||.|
T Consensus 509 aIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~ 542 (710)
T TIGR03796 509 ALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIP 542 (710)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEe
Confidence 5689999999999999999999999999999976
No 400
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.24 E-value=1.4e-11 Score=127.80 Aligned_cols=65 Identities=15% Similarity=0.181 Sum_probs=53.8
Q ss_pred hhHhhhhcccCCCC--CCCCCChHH--------HHHHHHHHHHhccchhhc-------------------c--cccc-e-
Q psy845 612 SKVVTMRSKLDSDV--QGDQLSLGE--------KQLLCLARALLRKTKKKK-------------------K--SGVN-I- 658 (677)
Q Consensus 612 efI~~LP~GldT~v--~G~~LSGGQ--------RQRIaIARALLr~p~IL~-------------------~--~~~T-I- 658 (677)
|.+.++++++++.. .|.++|||| |||+++||+++++++|.. . .+.| |
T Consensus 110 Dei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l~T~~~d~~~~~~~~i~~~~~~~~~~~iv 189 (249)
T cd01128 110 DSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTIIATALVDTGSRMDDVIFEEFKGTGNMELV 189 (249)
T ss_pred ECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEeeeheecCCCcccchHHHHHhcCCCcEEE
Confidence 56788999999988 899999999 999999999999998761 0 1233 2
Q ss_pred ----ecccccccEEEEEeCCee
Q psy845 659 ----TRPVTSCDKVLVMDNGQA 676 (677)
Q Consensus 659 ----LsTI~~aDrIlVLd~GrI 676 (677)
+++..++|.|.||++|++
T Consensus 190 ls~~la~~~~~paI~vl~s~sr 211 (249)
T cd01128 190 LDRRLAERRIFPAIDILKSGTR 211 (249)
T ss_pred EchHHhhCCCCCeEEEcCCCCc
Confidence 667889999999999975
No 401
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.23 E-value=1e-11 Score=124.21 Aligned_cols=32 Identities=31% Similarity=0.344 Sum_probs=26.4
Q ss_pred cceeeEEeCCcEEEEEcCCCCChHHHHHHHhcC
Q psy845 455 ANVSFRINHGENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 455 knISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++++.+| ..+|+|||||||||++..|.-.
T Consensus 13 ~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~ 44 (198)
T cd03276 13 RHLQIEFGPR-VNFIVGNNGSGKSAILTALTIG 44 (198)
T ss_pred eeeEEecCCC-eEEEECCCCCcHHHHHHHHHHH
Confidence 5566777776 7799999999999999999743
No 402
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.21 E-value=1.9e-08 Score=117.64 Aligned_cols=34 Identities=41% Similarity=0.579 Sum_probs=32.4
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|+||||||||++.|+|+|+|++|+|++||.|
T Consensus 483 aIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~ 516 (686)
T TIGR03797 483 AIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQD 516 (686)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEE
Confidence 5689999999999999999999999999999986
No 403
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.20 E-value=6.7e-08 Score=113.55 Aligned_cols=35 Identities=46% Similarity=0.709 Sum_probs=33.3
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
-+.||+||||||||+|+|+|+|+|++|+|++||.|
T Consensus 502 vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~d 536 (709)
T COG2274 502 VAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVD 536 (709)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEe
Confidence 36789999999999999999999999999999998
No 404
>KOG0066|consensus
Probab=99.19 E-value=1.8e-11 Score=133.04 Aligned_cols=144 Identities=24% Similarity=0.280 Sum_probs=98.5
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
+-+-+.||+|.|++. .+..++++|-|.--.+||||||+|.|||||++||.|-.+|++|+.+-+- |-+|
T Consensus 585 PvLGlH~VtFgy~gq-kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~i 652 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQ-KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLRI 652 (807)
T ss_pred CeeecccccccCCCC-CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eeee
Confidence 456789999999876 4689999999999999999999999999999999999999999875432 3345
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG 594 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~ 594 (677)
|+-.|+.. +.|+- ..|-.|.+.-.=
T Consensus 653 G~FdQh~~-------------------------------------------E~L~~------------Eetp~EyLqr~F 677 (807)
T KOG0066|consen 653 GWFDQHAN-------------------------------------------EALNG------------EETPVEYLQRKF 677 (807)
T ss_pred echhhhhH-------------------------------------------Hhhcc------------ccCHHHHHHHhc
Confidence 55444311 01100 012222221000
Q ss_pred CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhcc
Q psy845 595 RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKKK 653 (677)
Q Consensus 595 ~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~~ 653 (677)
+...++-.+++-..|+..- -+| +.-..||||||-|+++|---++.|+++.+
T Consensus 678 Nlpyq~ARK~LG~fGL~sH-------AHT-ikikdLSGGQKaRValaeLal~~PDvlIL 728 (807)
T KOG0066|consen 678 NLPYQEARKQLGTFGLASH-------AHT-IKIKDLSGGQKARVALAELALGGPDVLIL 728 (807)
T ss_pred CCChHHHHHHhhhhhhhhc-------cce-EeeeecCCcchHHHHHHHHhcCCCCEEEe
Confidence 2233444555555444321 122 25679999999999999999999998743
No 405
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.18 E-value=3.9e-08 Score=112.22 Aligned_cols=34 Identities=47% Similarity=0.736 Sum_probs=32.0
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|+||||||||++.|+|+++|++|+|++||.|
T Consensus 362 ~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~ 395 (571)
T TIGR02203 362 ALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHD 395 (571)
T ss_pred EEECCCCCCHHHHHHHHHhccCCCCCeEEECCEe
Confidence 4679999999999999999999999999999976
No 406
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.17 E-value=1.8e-11 Score=132.74 Aligned_cols=47 Identities=32% Similarity=0.640 Sum_probs=42.3
Q ss_pred CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcC--------CCCCccEEEE
Q psy845 451 PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRL--------VELSSGQIKI 497 (677)
Q Consensus 451 ~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~--------y~p~~G~I~I 497 (677)
.++|+|+||+|+|||.+++||+|||||||++++++|. |.|++|.|.+
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~v 450 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEV 450 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceec
Confidence 4689999999999999999999999999999999986 6777777765
No 407
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.17 E-value=1.9e-07 Score=106.84 Aligned_cols=34 Identities=44% Similarity=0.750 Sum_probs=31.9
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|+||||||||++.|+|+++|++|+|++||.|
T Consensus 370 ~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~ 403 (576)
T TIGR02204 370 ALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVD 403 (576)
T ss_pred EEECCCCCCHHHHHHHHHhccCCCCCEEEECCEE
Confidence 5679999999999999999999999999999975
No 408
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.14 E-value=2.7e-07 Score=108.78 Aligned_cols=34 Identities=32% Similarity=0.567 Sum_probs=32.2
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|+||||||||++.|+|+|+|++|+|++||.|
T Consensus 511 aIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~ 544 (711)
T TIGR00958 511 ALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVP 544 (711)
T ss_pred EEECCCCCCHHHHHHHHHhccCCCCCEEEECCEE
Confidence 5689999999999999999999999999999985
No 409
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.14 E-value=7.9e-11 Score=118.52 Aligned_cols=156 Identities=24% Similarity=0.388 Sum_probs=98.5
Q ss_pred EEeeeEEe--CCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC----CCccEEEECCEecccccHHHhh-
Q psy845 439 FKNVSLRY--RDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE----LSSGQIKIDDFDIASVELETLR- 511 (677)
Q Consensus 439 fknVsFsY--~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~----p~~G~I~IdG~dI~~l~~~~~~- 511 (677)
++|++.-+ +++...+.+++|++.+.||+-|+||+||||||-+++.++|... .+..+..+|++|+-++++.+-|
T Consensus 6 IrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk 85 (330)
T COG4170 6 IRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRK 85 (330)
T ss_pred ccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhh
Confidence 34444433 3344468999999999999999999999999999999999864 2334455667777666555433
Q ss_pred ---hhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhh
Q psy845 512 ---SRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRY 588 (677)
Q Consensus 512 ---~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrE 588 (677)
++|++++|+|.--- | +.+..-+ -+-+
T Consensus 86 ~ig~~isMIFQeP~sCL---------------------D----------------PS~~iG~--------------QlIq 114 (330)
T COG4170 86 LVGHNVSMIFQEPQSCL---------------------D----------------PSERVGR--------------QLIQ 114 (330)
T ss_pred hhccchhhhhcCchhhc---------------------C----------------hHHHHHH--------------HHHh
Confidence 34455555553111 0 1111100 1334
Q ss_pred ccc---cCCC------CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 589 NLD---PFGR------CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 589 NI~---~~~~------~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
||- +-++ -...+-.+.+.++|++|--+-+. . ....|-.||-|++.||-|+..+|+.+
T Consensus 115 ~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~-S-----YP~ElTeGE~QKVMIA~A~AnqPrLL 180 (330)
T COG4170 115 NIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMR-S-----YPYELTEGECQKVMIAIALANQPRLL 180 (330)
T ss_pred hCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHH-h-----CcchhccCcceeeeeehhhccCCceE
Confidence 552 2111 12344566788888875422110 0 34578889999999999999999866
No 410
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.13 E-value=2.7e-07 Score=108.52 Aligned_cols=34 Identities=38% Similarity=0.631 Sum_probs=32.3
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|+||||||||++.|+|+|+|++|+|++||.|
T Consensus 504 aIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~ 537 (708)
T TIGR01193 504 TIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFS 537 (708)
T ss_pred EEECCCCCCHHHHHHHHhccCCCCCcEEEECCEE
Confidence 5689999999999999999999999999999976
No 411
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.13 E-value=1.1e-07 Score=108.58 Aligned_cols=34 Identities=32% Similarity=0.601 Sum_probs=32.0
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|+||||||||+++|+|+++|++|+|++||.|
T Consensus 348 ~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~ 381 (544)
T TIGR01842 348 AIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGAD 381 (544)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCceEEECCEe
Confidence 5689999999999999999999999999999875
No 412
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.12 E-value=7.8e-08 Score=109.04 Aligned_cols=34 Identities=38% Similarity=0.674 Sum_probs=32.0
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|+||||||||+++|+|+++|++|+|++||.|
T Consensus 352 ~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~ 385 (529)
T TIGR02857 352 ALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVP 385 (529)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEe
Confidence 5689999999999999999999999999999975
No 413
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.11 E-value=1.3e-07 Score=111.02 Aligned_cols=34 Identities=41% Similarity=0.724 Sum_probs=32.3
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|+||||||||+++|+|+|+|++|+|++||.|
T Consensus 495 aIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~ 528 (694)
T TIGR03375 495 AIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVD 528 (694)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE
Confidence 5689999999999999999999999999999986
No 414
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.10 E-value=1.3e-07 Score=107.30 Aligned_cols=34 Identities=35% Similarity=0.666 Sum_probs=32.2
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|++|||||||++.|+|+|+|++|+|++||.|
T Consensus 365 aIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~ 398 (529)
T TIGR02868 365 AILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVS 398 (529)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 5689999999999999999999999999999976
No 415
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.10 E-value=9e-08 Score=112.30 Aligned_cols=34 Identities=47% Similarity=0.704 Sum_probs=32.3
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|+||||||||+++|+|+++|++|+|++||.|
T Consensus 487 aivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~ 520 (694)
T TIGR01846 487 GIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVD 520 (694)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCCceEEECCEe
Confidence 5689999999999999999999999999999986
No 416
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.10 E-value=2.7e-07 Score=105.70 Aligned_cols=35 Identities=34% Similarity=0.398 Sum_probs=32.6
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
.+.+|+||||||||+++|+|+++|++|+|++||.|
T Consensus 371 ~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~ 405 (555)
T TIGR01194 371 VFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAA 405 (555)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE
Confidence 35689999999999999999999999999999976
No 417
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.08 E-value=6.1e-07 Score=103.28 Aligned_cols=34 Identities=53% Similarity=0.727 Sum_probs=32.0
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|+||||||||++.|+|+++|++|+|++||.|
T Consensus 365 ~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~ 398 (588)
T PRK13657 365 AIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTD 398 (588)
T ss_pred EEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEE
Confidence 5689999999999999999999999999999975
No 418
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.08 E-value=4.6e-07 Score=104.31 Aligned_cols=34 Identities=38% Similarity=0.644 Sum_probs=32.2
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|+||||||||++.|+|+|+|++|+|++||.|
T Consensus 371 aIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~ 404 (592)
T PRK10790 371 ALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRP 404 (592)
T ss_pred EEECCCCCCHHHHHHHHhcccCCCCceEEECCEE
Confidence 5689999999999999999999999999999976
No 419
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.06 E-value=1.6e-10 Score=128.73 Aligned_cols=67 Identities=19% Similarity=0.229 Sum_probs=56.4
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCcc-EEEECCEecccccHHHhhhhcccccCCc
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG-QIKIDDFDIASVELETLRSRLSVIPQDP 521 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G-~I~IdG~dI~~l~~~~~~~~i~~v~q~~ 521 (677)
.||+|||+++++||.++|+||||||||||++ .++.+|++| +|.+||.++.+.+..++ +.+-+|+|+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai-~~LR~VFQ~f 87 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAM-ETLDEIFDGF 87 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHH-HHHHHHHHhh
Confidence 5899999999999999999999999999999 777788888 89999999987543332 2223888875
No 420
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.06 E-value=1.1e-06 Score=101.33 Aligned_cols=34 Identities=50% Similarity=0.732 Sum_probs=32.0
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|+||||||||+++|+|+++|++|+|++||.|
T Consensus 365 ~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~ 398 (585)
T TIGR01192 365 AIVGPTGAGKTTLINLLQRVYDPTVGQILIDGID 398 (585)
T ss_pred EEECCCCCCHHHHHHHHccCCCCCCCEEEECCEE
Confidence 5689999999999999999999999999999875
No 421
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.03 E-value=4.3e-07 Score=104.50 Aligned_cols=34 Identities=38% Similarity=0.592 Sum_probs=32.2
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|.||||||||++.|+|+++|++|+|++||.|
T Consensus 370 aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~ 403 (574)
T PRK11160 370 ALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQP 403 (574)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE
Confidence 5689999999999999999999999999999976
No 422
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.02 E-value=6e-07 Score=103.18 Aligned_cols=34 Identities=44% Similarity=0.749 Sum_probs=32.0
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|+||||||||+++|+|+++|++|+|++||.|
T Consensus 345 ~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~ 378 (569)
T PRK10789 345 GICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIP 378 (569)
T ss_pred EEECCCCCCHHHHHHHHhcccCCCCCEEEECCEE
Confidence 5689999999999999999999999999999975
No 423
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.00 E-value=3.1e-10 Score=113.22 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=29.6
Q ss_pred cccceeeEEeCCc-EEEEEcCCCCChHHHHHHHh
Q psy845 453 VLANVSFRINHGE-NIGIVGRTGAGKSSLLVALF 485 (677)
Q Consensus 453 VLknISl~I~~GE-~VAIVGpSGSGKSTLi~LL~ 485 (677)
...++|+++++|+ +++|+|||||||||+++.+.
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence 3457899999996 59999999999999999988
No 424
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.97 E-value=1e-09 Score=114.98 Aligned_cols=34 Identities=38% Similarity=0.522 Sum_probs=27.4
Q ss_pred ccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 454 LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 454 LknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+++++++..+| ..+|+|||||||||++.+|.-+.
T Consensus 12 ~~~~~i~~~~~-~~~i~G~nGsGKS~il~ai~~~~ 45 (276)
T cd03241 12 IEELELDFEEG-LTVLTGETGAGKSILLDALSLLL 45 (276)
T ss_pred eeeeEEEeCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 35567777777 79999999999999999986443
No 425
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.97 E-value=6.6e-06 Score=94.43 Aligned_cols=35 Identities=49% Similarity=0.766 Sum_probs=32.9
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
-+.||.+|||||||++.|+|+|+|++|+|++||.|
T Consensus 358 vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~d 392 (567)
T COG1132 358 VAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGID 392 (567)
T ss_pred EEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEe
Confidence 36789999999999999999999999999998887
No 426
>PRK11098 microcin B17 transporter; Reviewed
Probab=98.95 E-value=1.2e-05 Score=89.29 Aligned_cols=276 Identities=9% Similarity=0.070 Sum_probs=162.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhh--------hhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 115 PLLIITTLYHLISKVFRSVYLRSVFQNMWS--------MLFAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVF 186 (677)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (677)
.+++..+++..--.++.+.|-++.+.-... +.-.+|.....+.+.++..+.+.++.+.+.+-++-+.+++
T Consensus 95 ~~il~l~l~~v~l~V~~n~w~~~FydaLq~al~~~~~~d~~~F~~~l~~f~~i~~~~v~l~v~~~~~~~~l~irWR~w-- 172 (409)
T PRK11098 95 ALIIFVTWFLVQVSVAVNAWYAPFYDLIQTALSSPGKVTIGQFYSEVGVFLGIALIAVVISVLNNFFVSHYVFRWRTA-- 172 (409)
T ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 355556666666667777777776666654 5556677777777777778888888888887777777766
Q ss_pred HHHHHHHHHHHhhhccccccccchhHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHH-------------
Q psy845 187 QNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWF------------- 253 (677)
Q Consensus 187 q~~~~~~f~~~~~~~~~~~f~~~~~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~l------------- 253 (677)
||....++=...+ --|.|.+|++-|.....+...+..+ .+++++++++.-..++..++..+
T Consensus 173 --LT~~yl~~Wl~~r---~ienPDQRIqEDi~~F~~~tl~L~~-~li~si~tLisF~~ILW~LS~~l~~~~i~G~ipg~L 246 (409)
T PRK11098 173 --MNEYYMAHWQKLR---HIEGAAQRVQEDTMRFASTLENLGV-SFINAIMTLIAFLPVLVTLSAHVPELPIVGHIPYGL 246 (409)
T ss_pred --HHHHHHHHHHhcC---CCCCccHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccccccccccCCCchHH
Confidence 5554444433332 1268999988888877765555443 58888888888777777766532
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH---HHHHHHchHHHHHHhccHH-HHHHHHHHHHHHHHHHHHH
Q psy845 254 ALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFS---NVSSTVSGLHIIHVFHKEQ-DFVRRFCEQYDENSTTLFL 329 (677)
Q Consensus 254 al~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s---~~~E~l~Gi~tIkaf~~e~-~~~~~~~~~~~~~~~~~~~ 329 (677)
..++++-.++...+....+++..++.-.++...++... +..|.-+ +.|. ...++|++..+...+...+
T Consensus 247 v~~aiiyai~GT~it~~vG~~L~~Lnf~qqr~EAdFR~~LVrvrenaE--------~~E~~~L~~~F~~V~~N~~rl~~~ 318 (409)
T PRK11098 247 VIAAIVWSLFGTGLLAVVGIKLPGLEFKNQRVEAAYRKELVYGEDDAD--------RATPPTVRELFSNVRKNYFRLYFH 318 (409)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHhHhhhhhh--------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222333333343333332222222222222 2223222 2222 2233343333333332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy845 330 CSMAMRWLAVRIDVLAVIAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKK 408 (677)
Q Consensus 330 ~~~~~~~~~~~l~~l~~l~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~ 408 (677)
... ...+......+.. +.-.++..-...+|+++.|.+........++.+.++.+++.+.++.+-.+..+|+.++.+.
T Consensus 319 ~~~-l~~f~~~y~~~~~-i~P~iv~aP~y~aG~ItlG~l~Q~~~AF~~V~~als~~v~sy~~lael~A~~~RL~~F~~~ 395 (409)
T PRK11098 319 YMY-FNIARILYLQVDN-VFGLFLLFPSIVAGTITLGLMTQITNVFGQVRGSFQYLINSWTTIVELLSIYKRLRSFEAA 395 (409)
T ss_pred HHH-HHHHHHHHHHHHH-HHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1111111111111 1112223346679999999999999999999999999999999999999999999998743
No 427
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.91 E-value=1.9e-09 Score=109.22 Aligned_cols=52 Identities=15% Similarity=0.137 Sum_probs=32.6
Q ss_pred HHHHHHHHHccchhhHhhhhcccCCCC-CCCCCChHHHHHHHHHHHH----hccchhh
Q psy845 599 TELWDALEKSHLKSKVVTMRSKLDSDV-QGDQLSLGEKQLLCLARAL----LRKTKKK 651 (677)
Q Consensus 599 eeI~~Al~~a~l~efI~~LP~GldT~v-~G~~LSGGQRQRIaIARAL----Lr~p~IL 651 (677)
+.+.+++..... |.+.++|.+.+..- +..+||||||||+.+|+++ +++|+++
T Consensus 96 ~~~~~~~~~~~~-e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~ll 152 (213)
T cd03277 96 DRVGEFAKLSPI-ELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFR 152 (213)
T ss_pred HHHHHHHhCChH-hHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEE
Confidence 334444444333 44456666554322 6789999999998877554 5788755
No 428
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=98.87 E-value=1.9e-09 Score=106.31 Aligned_cols=56 Identities=20% Similarity=0.123 Sum_probs=41.7
Q ss_pred HhhhhcccCCCCCCCCCChHHHHHHHHHHHHh----ccchhh------------------------cccccce------e
Q psy845 614 VVTMRSKLDSDVQGDQLSLGEKQLLCLARALL----RKTKKK------------------------KKSGVNI------T 659 (677)
Q Consensus 614 I~~LP~GldT~v~G~~LSGGQRQRIaIARALL----r~p~IL------------------------~~~~~TI------L 659 (677)
+..+|+|-.|++ ||||||||+++|||+. ++|+++ ..+++|+ .
T Consensus 83 ~~~~~~~~~~~~----LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~ 158 (178)
T cd03239 83 YFLVLQGKVEQI----LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKK 158 (178)
T ss_pred eEEecCCcCccc----CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 456788888876 9999999999999995 677754 1123552 2
Q ss_pred cccccccEEEEEeC
Q psy845 660 RPVTSCDKVLVMDN 673 (677)
Q Consensus 660 sTI~~aDrIlVLd~ 673 (677)
+.++.|||++++++
T Consensus 159 ~~~~~adrvi~i~~ 172 (178)
T cd03239 159 EMFENADKLIGVLF 172 (178)
T ss_pred HHHhhCCeEEEEEE
Confidence 34567999999986
No 429
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.86 E-value=2.2e-06 Score=98.57 Aligned_cols=35 Identities=40% Similarity=0.631 Sum_probs=32.0
Q ss_pred cccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 524 f~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
.-+.+|++|||||||++.|+|+| |++|+|++||.|
T Consensus 378 ~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~ 412 (588)
T PRK11174 378 RIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIE 412 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEe
Confidence 34678999999999999999999 999999999976
No 430
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.84 E-value=7e-09 Score=113.95 Aligned_cols=81 Identities=21% Similarity=0.197 Sum_probs=64.1
Q ss_pred HHHHHHHHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCcccc-----------ceeeEEeCC
Q psy845 396 FLAVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLA-----------NVSFRINHG 464 (677)
Q Consensus 396 ~~s~eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLk-----------nISl~I~~G 464 (677)
..+.+|+.++++ .++.... .+. ...+.++|+||+|.||++. .+|+ |+++.|.+|
T Consensus 104 ~~~~ER~~~Ll~-v~~vn~~-----------~~e--~~~~ri~Fe~LTf~YP~er-~~Le~~~~~~~~R~id~~~pig~G 168 (415)
T TIGR00767 104 PKEGERYFALLK-VESVNGD-----------DPE--KAKNRVLFENLTPLYPNER-LRLETSTEDLSTRVLDLFAPIGKG 168 (415)
T ss_pred cccHhHHHHHhC-CCccCCC-----------Ccc--ccCCCeEEEEeeecCCCcc-ceeecCccccceeeeeeEEEeCCC
Confidence 457899999983 3322111 111 1357899999999998764 6997 999999999
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCCCCC
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRLVELS 491 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~y~p~ 491 (677)
|+++||||+|+|||||++++.+.+...
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhccc
Confidence 999999999999999999999988654
No 431
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.83 E-value=1.5e-09 Score=119.18 Aligned_cols=157 Identities=24% Similarity=0.272 Sum_probs=92.8
Q ss_pred eeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCC
Q psy845 441 NVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQD 520 (677)
Q Consensus 441 nVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~ 520 (677)
++.-+|+.+. ..|-++- ..++|+.+||+||+|-||||-+|+|+|-..|.=|+- |+ -.++ .+-+++-=|--.|+
T Consensus 79 e~vHRYg~Ng-FkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~--pp~w-deVi~~FrGtELq~ 151 (591)
T COG1245 79 EVVHRYGVNG-FKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--ED--PPSW-DEVIKRFRGTELQN 151 (591)
T ss_pred cceeeccCCc-eEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CC--CCCH-HHHHHHhhhhHHHH
Confidence 4566786542 2333322 356899999999999999999999999999998853 22 1111 01112211211111
Q ss_pred ccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHH
Q psy845 521 PVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTE 600 (677)
Q Consensus 521 ~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdee 600 (677)
- |-+.-+|+|+.- .++-||--=|-.+.|+++|=+.-..+ ...
T Consensus 152 Y-----------------------F~~l~~g~~r~v-------------~K~QYVd~iPk~~KG~v~elLk~~de--~g~ 193 (591)
T COG1245 152 Y-----------------------FKKLYEGELRAV-------------HKPQYVDLIPKVVKGKVGELLKKVDE--RGK 193 (591)
T ss_pred H-----------------------HHHHHcCCccee-------------cchHHHHHHHHHhcchHHHHHHhhhh--cCc
Confidence 1 122233433321 23445555566678888777641100 011
Q ss_pred HHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 601 LWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 601 I~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
..+..++.++.+.+.+ .-.+|||||-||+|||-|++|++++.
T Consensus 194 ~devve~l~L~nvl~r---------~v~~LSGGELQr~aIaa~l~rdADvY 235 (591)
T COG1245 194 FDEVVERLGLENVLDR---------DVSELSGGELQRVAIAAALLRDADVY 235 (591)
T ss_pred HHHHHHHhcchhhhhh---------hhhhcCchHHHHHHHHHHHhccCCEE
Confidence 3334444444443322 46799999999999999999999876
No 432
>PRK12369 putative transporter; Reviewed
Probab=98.79 E-value=5.5e-05 Score=81.87 Aligned_cols=282 Identities=10% Similarity=0.069 Sum_probs=165.2
Q ss_pred hhhHHH--HHHHHHHHHHHHHHHHHHhhhhhhhhhhh--------hhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q psy845 110 PWFALP--LLIITTLYHLISKVFRSVYLRSVFQNMWS--------MLFAFLMICFVFPWFALPLLIITTLYHLISKVFRS 179 (677)
Q Consensus 110 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 179 (677)
+|-.+. +++...+.+.--.++.+.|-+..+.-... +.-.++--...+.+.++..+.+.+..+.+.+.++-
T Consensus 13 ~~~ll~~~~~i~l~l~~v~~~v~~n~w~~~fy~aL~~~~~~~~~~~~~~f~~~l~~f~~~~~~~v~~~v~~~~~~~~l~i 92 (326)
T PRK12369 13 LWAYGGLFFILLSLWYQVSLNVAINEWYGDFYDLLQKAKIEPNNHTAGDFWASILSFLAIAMPYVLIATVVDYFASHYAF 92 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555 56777777777778888888777766554 34445555566677777888888888888888988
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccccchhHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHH-----
Q psy845 180 VYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFA----- 254 (677)
Q Consensus 180 ~~~~~~~q~~~~~~f~~~~~~~~~~~f~~~~~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~la----- 254 (677)
+.++++-+++...=+ ... +-=|.|..|++-|.+...+...+..+ .+++++++++....++..++..+.
T Consensus 93 ~WR~wLT~~~l~~wl----~~~--~~iDNPDQRI~EDi~~f~~~tl~l~~-~~i~s~~~l~sF~~iLW~lS~~l~~~~~g 165 (326)
T PRK12369 93 RWREAMTFSYLKFWR----NKR--DNIEGSSQRIQEDTYRFAKIMESLGL-SFLRAIMTLIAFIPILWGLSDGVSLPFLK 165 (326)
T ss_pred HHHHHHHHHHHHHHh----cCC--CCCCCccHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCceeeecC
Confidence 888886665555433 222 11278999988888887775555444 588888888887777777663221
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH---HHHHHHchHHHHHHhccH-HHHHHHHHHHHHHH
Q psy845 255 -------LPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFS---NVSSTVSGLHIIHVFHKE-QDFVRRFCEQYDEN 323 (677)
Q Consensus 255 -------l~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s---~~~E~l~Gi~tIkaf~~e-~~~~~~~~~~~~~~ 323 (677)
..+++..++...+..+.+++..++.-.++...+++.- +..|.-+. + .| +...++|.+..+..
T Consensus 166 ~ipg~lv~~aiiyai~gt~it~~iGr~L~~ln~~qq~~EAdFR~~Lvrvre~ae~------~-~E~~~l~~~f~~v~~n~ 238 (326)
T PRK12369 166 DIPGSLVWIALLISLGGLVISWFVGIKLPGLEYNNQKVEAAFRKELVYAEDDKKN------Y-AKPETLIELFTGLRFNY 238 (326)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHcCcCchhhHHHHHHHHHHHHHHHhhccchhh------h-hhHHHHHHHHHHHHHHH
Confidence 1112222222233333333332222222222222211 12222211 1 22 22333443333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 324 STTLFLCSMAMRWLAVRIDVLAVIAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERIN 403 (677)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~ 403 (677)
.+...... ...++......+.. +.-.++.......|.++.|.+.........+.+.+..+++.+.++.+-.+.++|+.
T Consensus 239 ~~~~~~~~-~l~~~~~~y~~~~~-i~p~li~aP~y~sg~i~lG~l~Q~~~AF~~v~~als~~v~~y~~la~~~A~~~RL~ 316 (326)
T PRK12369 239 FRLFLHYG-YFNIWLISFSQMMV-IVPYLIMAPGLFAGVITLGVLMQISNAFSQVRSSFSVFIRNWTTITELRSIYKRLK 316 (326)
T ss_pred HHHHHHHH-hHHHHHHHHHHHHH-HHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221111 11111111111111 11122233456799999999999888899999999999999999999999999999
Q ss_pred Hhhh
Q psy845 404 NCSK 407 (677)
Q Consensus 404 eil~ 407 (677)
++.+
T Consensus 317 ~f~~ 320 (326)
T PRK12369 317 EFEK 320 (326)
T ss_pred HHHH
Confidence 8863
No 433
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.77 E-value=8e-09 Score=102.48 Aligned_cols=92 Identities=23% Similarity=0.241 Sum_probs=59.6
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHH
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVA 541 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~ 541 (677)
++|+.++|+||||||||||+++|++.++ . +... .....
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~-~---~~~~-~~~~t------------------------------------- 40 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP-N---LQLS-VSATT------------------------------------- 40 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc-c---ceec-cCccc-------------------------------------
Confidence 5899999999999999999999999875 1 1110 00000
Q ss_pred HHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHHHH
Q psy845 542 LFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEK 607 (677)
Q Consensus 542 ~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~ 607 (677)
-+|.+|+ +||.|+...+.+++++. +.|+.+++.+++.+|. ++ .+.+++.++++.
T Consensus 41 ----r~p~~ge--~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-y~--~~~~~i~~~l~~ 94 (205)
T PRK00300 41 ----RAPRPGE--VDGVDYFFVSKEEFEEM---IENGEFLEWAEVFGNY-YG--TPRSPVEEALAA 94 (205)
T ss_pred ----cCCCCCC--cCCCeeEEcCHHHHHHH---HHcCCcEEEEEECCcc-cc--CcHHHHHHHHHc
Confidence 1244555 45666655577777664 4578888888888884 22 244555555443
No 434
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.77 E-value=4.7e-09 Score=109.65 Aligned_cols=176 Identities=16% Similarity=0.148 Sum_probs=86.3
Q ss_pred cceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCC
Q psy845 455 ANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAG 534 (677)
Q Consensus 455 knISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~ 534 (677)
++.++++.+| ..+|+|||||||||++.+|.-+....++.- .+..++-.... -...+...++.... .-.+...
T Consensus 13 ~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~~~~~r~-~~~~~~i~~~~--~~~~v~~~f~~~~~-~~~i~~~--- 84 (270)
T cd03242 13 AELELEFEPG-VTVLVGENAQGKTNLLEAISLLATGKSHRT-SRDKELIRWGA--EEAKISAVLERQGG-ELALELT--- 84 (270)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhccCCCCCC-CCHHHHHhcCC--CCEEEEEEEEeCCC-eEEEEEE---
Confidence 4456677776 688999999999999999866543221110 00011100000 00111111111000 0001000
Q ss_pred CchhHHHHHHhhhhccccccccccchhh-hhHHHHhhhcccccccccccccchhhccccCC---CCChHH-------HHH
Q psy845 535 KSSLLVALFRLVELSSGQIKIDDFDIAS-VELETLRSRLSVIPQDPVLFNGTIRYNLDPFG---RCHDTE-------LWD 603 (677)
Q Consensus 535 ~~~~~~~~~~~~~~~~g~i~~~~~~~~~-~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~---~~sdee-------I~~ 603 (677)
+...+...+++||..++. .+..++-..+.+-|++..|++++-.+-..+.. ...+.+ ..+
T Consensus 85 ----------~~~~~~~~~~ing~~~~~l~~l~~~l~~i~~~~~~~~l~~~~p~~rr~~lD~~~~~~~~~y~~~~~~~~~ 154 (270)
T cd03242 85 ----------IRSGGGRKARLNGIKVRRLSDLLGVLNAVWFAPEDLELVKGSPADRRRFLDRLLGQLEPAYAHVLSEYQK 154 (270)
T ss_pred ----------EEcCCceEEEECCeeccCHHHHhCcCcEEEEecchhhhhcCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 001122356788888776 34555556677778888888655444332211 111122 222
Q ss_pred HHHHccchhhHhhhhcccCCCC--CC----CCCChHHHHHHHHHHHHh---------ccchhh
Q psy845 604 ALEKSHLKSKVVTMRSKLDSDV--QG----DQLSLGEKQLLCLARALL---------RKTKKK 651 (677)
Q Consensus 604 Al~~a~l~efI~~LP~GldT~v--~G----~~LSGGQRQRIaIARALL---------r~p~IL 651 (677)
++++-+ + +.+-|+.-+..+ ++ ..+|+||||++++||++. ++|+++
T Consensus 155 ~~~~~~--~-~~~g~~~d~l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~il 214 (270)
T cd03242 155 ALRQRN--A-LLKGPHRDDLLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVL 214 (270)
T ss_pred HHHHHH--H-HhCCCChhheEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEE
Confidence 222111 1 111233333322 33 348999999999999984 678765
No 435
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.75 E-value=2.4e-09 Score=115.40 Aligned_cols=39 Identities=41% Similarity=0.603 Sum_probs=36.0
Q ss_pred cccccccCCCCCchhHHHHHHhhhhccccccccccchhh
Q psy845 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 562 (677)
Q Consensus 524 f~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~ 562 (677)
|-..+|.|||||||||+||.||.+|++|+|++||.|+++
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~ 69 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTD 69 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCC
Confidence 445689999999999999999999999999999999876
No 436
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.74 E-value=1.7e-08 Score=106.22 Aligned_cols=81 Identities=21% Similarity=0.238 Sum_probs=65.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccccc-HHHhhhhcccccCCccccccccccCCCCCchhHHHHH
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE-LETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALF 543 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~-~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~ 543 (677)
+.++|+||+||||||+++.|+|++.|++|+|.++|.++..++ ..++...++++||+..--...+.+| |.|..-+.|+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~-~~k~~~~~~~i 190 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDG-CPKAEGMMMLI 190 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccccccccccccc-chHHHHHHHHH
Confidence 789999999999999999999999999999999999998664 4567778899999764433445555 77766666666
Q ss_pred Hhh
Q psy845 544 RLV 546 (677)
Q Consensus 544 ~~~ 546 (677)
+-.
T Consensus 191 ~~~ 193 (270)
T TIGR02858 191 RSM 193 (270)
T ss_pred HhC
Confidence 553
No 437
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.68 E-value=3e-08 Score=110.62 Aligned_cols=87 Identities=22% Similarity=0.297 Sum_probs=72.5
Q ss_pred CccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEEC---CEecccccHHH-
Q psy845 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKID---DFDIASVELET- 509 (677)
Q Consensus 434 ~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~Id---G~dI~~l~~~~- 509 (677)
.+.++.++++..|..+ ..+++.++ ++.+||+++|+||||||||||++.|+|+.+|+.|.|... |.++.++..+.
T Consensus 137 p~~~~r~~v~~~l~TG-i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l 214 (450)
T PRK06002 137 PPAMTRARVETGLRTG-VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTL 214 (450)
T ss_pred CCCeEeecceEEcCCC-cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHH
Confidence 4568999999999766 45899986 999999999999999999999999999999999999885 56666543322
Q ss_pred ---hhhhcccccCCcc
Q psy845 510 ---LRSRLSVIPQDPV 522 (677)
Q Consensus 510 ---~~~~i~~v~q~~~ 522 (677)
.++++++++|...
T Consensus 215 ~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 215 ADNLKKAVAVVATSDE 230 (450)
T ss_pred HHhhCCeEEEEEcCCC
Confidence 3468999999764
No 438
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.64 E-value=7.9e-09 Score=112.02 Aligned_cols=39 Identities=36% Similarity=0.580 Sum_probs=36.1
Q ss_pred cccccccCCCCCchhHHHHHHhhhhccccccccccchhh
Q psy845 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 562 (677)
Q Consensus 524 f~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~ 562 (677)
|-..+|.+|||||||++||.||..||+|+|.+||.|+++
T Consensus 33 f~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~ 71 (352)
T COG3842 33 FVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITD 71 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCC
Confidence 345689999999999999999999999999999999887
No 439
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.64 E-value=6.7e-05 Score=88.14 Aligned_cols=28 Identities=39% Similarity=0.496 Sum_probs=25.8
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQI 553 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i 553 (677)
+.+|+||||||||+++|.|+++|++|+|
T Consensus 482 ~IvG~nGsGKSTLl~lL~Gl~~~~~G~i 509 (659)
T TIGR00954 482 LICGPNGCGKSSLFRILGELWPVYGGRL 509 (659)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCCeE
Confidence 5689999999999999999999999963
No 440
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.59 E-value=1.5e-07 Score=109.63 Aligned_cols=39 Identities=28% Similarity=0.418 Sum_probs=33.3
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHH
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLL 481 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi 481 (677)
.+++++.+ ..=||||+.+|+-|..++|.|-||||||||+
T Consensus 606 ~L~l~gA~-------~nNLkni~v~iPLg~~t~VTGVSGSGKSTLI 644 (935)
T COG0178 606 WLELKGAR-------RNNLKNIDVEIPLGVFTCVTGVSGSGKSTLI 644 (935)
T ss_pred eEEEeccc-------ccCcccceeecccccEEEEEecCCCCHHHhH
Confidence 36666553 2359999999999999999999999999999
No 441
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.59 E-value=4.4e-08 Score=100.03 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=33.2
Q ss_pred CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHh
Q psy845 451 PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALF 485 (677)
Q Consensus 451 ~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~ 485 (677)
+.|.+|++++.++|+.++|.|||||||||+++.+.
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~ 51 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIG 51 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHH
Confidence 46899999999999999999999999999999998
No 442
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=3.4e-05 Score=87.12 Aligned_cols=34 Identities=35% Similarity=0.609 Sum_probs=30.3
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
..+|++|||||||+.-|.|-++||+|+|.++|.+
T Consensus 368 AIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~ 401 (573)
T COG4987 368 AILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVE 401 (573)
T ss_pred EEECCCCCCHHHHHHHHHhccCCCCCeeeECCcC
Confidence 3478999999999999999999999998886654
No 443
>KOG0063|consensus
Probab=98.53 E-value=1.4e-07 Score=103.41 Aligned_cols=49 Identities=22% Similarity=0.396 Sum_probs=39.7
Q ss_pred EEeCCCCCccccceeeEEeCCc-----EEEEEcCCCCChHHHHHHHhcCCCCCcc
Q psy845 444 LRYRDNWPLVLANVSFRINHGE-----NIGIVGRTGAGKSSLLVALFRLVELSSG 493 (677)
Q Consensus 444 FsY~~~~~~VLknISl~I~~GE-----~VAIVGpSGSGKSTLi~LL~r~y~p~~G 493 (677)
++|++- ..-..+..+.|+.|| .+...|++|-||||++++++|..+|++|
T Consensus 343 y~Yp~m-~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~ 396 (592)
T KOG0063|consen 343 YSYPKM-KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEG 396 (592)
T ss_pred eccCcc-eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCcc
Confidence 567654 347888999999985 5778889999999999999998888876
No 444
>PRK01889 GTPase RsgA; Reviewed
Probab=98.50 E-value=9e-08 Score=104.30 Aligned_cols=70 Identities=24% Similarity=0.391 Sum_probs=55.7
Q ss_pred cccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccc
Q psy845 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 525 (677)
Q Consensus 453 VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~ 525 (677)
-++.+.-.+++|++++++|+||+|||||++.|+|...|..|+|..+|...+.. ..++++++++|+..+++
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~t---t~~~~l~~l~~~~~l~D 253 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHT---TTHRELHPLPSGGLLID 253 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcch---hhhccEEEecCCCeecC
Confidence 46666667889999999999999999999999999999999999987544332 23556666676666665
No 445
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.50 E-value=3.5e-08 Score=101.57 Aligned_cols=55 Identities=36% Similarity=0.501 Sum_probs=49.6
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhh-hHHHHhhhccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV-ELETLRSRLSVIPQDPV 580 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~-~~~~LR~~I~~V~Qd~~ 580 (677)
|.+|++|||||||+++|.|+-+|++|+|++||...... ..+..++.+.+|+|||.
T Consensus 37 givGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~ 92 (252)
T COG1124 37 GIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPY 92 (252)
T ss_pred EEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCc
Confidence 78999999999999999999999999999999666554 55588999999999995
No 446
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.50 E-value=3.8e-07 Score=115.22 Aligned_cols=52 Identities=27% Similarity=0.337 Sum_probs=39.4
Q ss_pred cccceeeEEeCCcEEEEEcCCCCChHHHHHHHh------cCC---CCCccEEEECCEeccc
Q psy845 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALF------RLV---ELSSGQIKIDDFDIAS 504 (677)
Q Consensus 453 VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~------r~y---~p~~G~I~IdG~dI~~ 504 (677)
=|||++++|+-|..+++.|-||||||||++=.+ .+. +.-+--|.||-.+|..
T Consensus 1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgr 1565 (1809)
T PRK00635 1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQIS 1565 (1809)
T ss_pred cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCC
Confidence 599999999999999999999999999997544 111 2333446777666543
No 447
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=0.00022 Score=81.43 Aligned_cols=129 Identities=15% Similarity=0.071 Sum_probs=70.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cccccc-cch----hHHhhhHHHHHHHhh--hhHH
Q psy845 158 WFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICF-VFPWFA-LPL----LIITTLYHLISKVFR--SVYL 229 (677)
Q Consensus 158 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~q~~~~~~f~~~~~~~-~~~~f~-~~~----~~~t~~~~~i~~v~~--s~~l 229 (677)
...+...++..+.-+..+.+-.....+++++.-+.. +|-++-. --..++ .|. ....+..+.+.+-.. ..++
T Consensus 36 ~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~-~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~ 114 (559)
T COG4988 36 FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKV-RASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYY 114 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHH
Confidence 445556777777777777777888888877766653 3333311 114444 452 333344444433332 2345
Q ss_pred HHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy845 230 RSVFQNM-WSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRS 287 (677)
Q Consensus 230 ~~il~~~-~~ll~~~v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s 287 (677)
...+... .+++..++++..+.|.=....+++.+-..+++..+.-.....++..+...+
T Consensus 115 ~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~~s~~~~~ 173 (559)
T COG4988 115 ARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFS 173 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 5555444 455555555555555555556666666666666666555655555554443
No 448
>KOG0058|consensus
Probab=98.47 E-value=3.3e-05 Score=89.76 Aligned_cols=35 Identities=34% Similarity=0.619 Sum_probs=33.1
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
.+.||.+|+||||+++.|+|||+|++|+|.+||.|
T Consensus 497 vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~ 531 (716)
T KOG0058|consen 497 VALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVP 531 (716)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCee
Confidence 36689999999999999999999999999999998
No 449
>KOG0057|consensus
Probab=98.47 E-value=2.1e-05 Score=88.92 Aligned_cols=33 Identities=48% Similarity=0.758 Sum_probs=31.7
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+++|+|||||||.+++||||+| ++|+|++||.|
T Consensus 382 aIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~d 414 (591)
T KOG0057|consen 382 AIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQD 414 (591)
T ss_pred EEECCCCCCHHHHHHHHHHHhc-cCCcEEECCee
Confidence 5689999999999999999999 99999999997
No 450
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.47 E-value=1.1e-07 Score=91.91 Aligned_cols=34 Identities=26% Similarity=0.301 Sum_probs=26.1
Q ss_pred eeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCC
Q psy845 458 SFRINHGENIGIVGRTGAGKSSLLVALFRLVELS 491 (677)
Q Consensus 458 Sl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~ 491 (677)
++.+.+|..+.|+|||||||||+++.+.-..-..
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~ 48 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALGGA 48 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4445556799999999999999999976544333
No 451
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=98.44 E-value=0.0009 Score=70.74 Aligned_cols=223 Identities=11% Similarity=0.102 Sum_probs=146.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHH-HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 106 CFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFL-MICFVFPWFALPLLIITTLYHLISKVFRSVYLRS 184 (677)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 184 (677)
...-+|.++..+++.++....--++.+.|-...+........+.. -....+.-.+++...+......+.+..+-..+++
T Consensus 21 ~~~~~~~ll~~ll~l~l~~~~lsv~~~~~~g~~~~aL~~~d~~~f~~~l~~~~~l~~~~~~l~~~~~yl~~~L~l~wR~~ 100 (281)
T PF06472_consen 21 ERWKAWLLLLVLLLLLLARVYLSVRINFWNGDFYNALQQKDLQAFWRLLLLFLLLAIASALLNSILKYLRQRLALRWREW 100 (281)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555554444455666666655555544433322 2222333355566666777777888888888888
Q ss_pred HHHHHHHHHHHH-----HhhhccccccccchhHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHH
Q psy845 185 VFQNMWSMLFAF-----LMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFAL-PLL 258 (677)
Q Consensus 185 ~~q~~~~~~f~~-----~~~~~~~~~f~~~~~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~lal-~~l 258 (677)
+-+++...-+++ +.... +=-|+|.+|+|.|.+...+-..+. ...++..+++++.....+...++++.. .++
T Consensus 101 Lt~~~~~~yl~~~~yY~l~~~~--~~idNpDQRIteDi~~f~~~~~~l-~~~~~~~~~~l~~f~~~L~~~~g~~~~~~~~ 177 (281)
T PF06472_consen 101 LTRHLHDRYLSNRTYYRLNNLD--GRIDNPDQRITEDIRKFTESSLSL-FLGLLKPILDLISFSVILWSISGWLGPWAAL 177 (281)
T ss_pred HHHHHHHHHcCCchhHhhhccc--cccccHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 777777643222 21111 112678999999999988755443 355788888877777777777776665 444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 259 IITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCS 331 (677)
Q Consensus 259 ~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~ 331 (677)
.-.++...+.+..++...++..+++...+++.....-..++.+.|-.++.|+.+.++.++..++..+......
T Consensus 178 ~y~~~~t~~~~~ig~~l~~l~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~E~~~l~~~f~~l~~~~~~~~ 250 (281)
T PF06472_consen 178 IYAILGTLITHWIGPPLGRLNAEQQRLEADFRYALVRLRENAESIAFYRGESRERRRLDRRFDALIDNWRRLI 250 (281)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556667777777777766667777888888888999999999999999999999888887666554433
No 452
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.42 E-value=1.6e-07 Score=104.60 Aligned_cols=52 Identities=19% Similarity=0.360 Sum_probs=43.6
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEE---ECCEeccc
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK---IDDFDIAS 504 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~---IdG~dI~~ 504 (677)
.+++++ +++++||+++|+|+||+|||||+++|+|+++|+.+.+- .+|.++++
T Consensus 144 ~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~e 198 (434)
T PRK07196 144 NAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKE 198 (434)
T ss_pred eeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHH
Confidence 589999 99999999999999999999999999999999875443 34444443
No 453
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.36 E-value=1.7e-07 Score=92.72 Aligned_cols=50 Identities=34% Similarity=0.450 Sum_probs=44.7
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEe
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 501 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~d 501 (677)
...+=+.+.+++|+.++|+|||||||||+++.|+++.+|++|.|.+++.+
T Consensus 13 ~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~ 62 (186)
T cd01130 13 LQAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTA 62 (186)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCcc
Confidence 35666677899999999999999999999999999999999999997643
No 454
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.36 E-value=4.1e-07 Score=101.70 Aligned_cols=67 Identities=19% Similarity=0.356 Sum_probs=56.8
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEe---ccc-----ccHHHhhhhcccccC
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD---IAS-----VELETLRSRLSVIPQ 519 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~d---I~~-----l~~~~~~~~i~~v~q 519 (677)
.+++++ +++++||+++|+|+||+|||||+++|+|+++|+.|.|.+.|++ +++ ++.+.+++.+.++.+
T Consensus 147 ~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~ 221 (438)
T PRK07721 147 RAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVAT 221 (438)
T ss_pred hhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEEC
Confidence 589999 9999999999999999999999999999999999999995444 443 233456788888864
No 455
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.35 E-value=0.0014 Score=72.17 Aligned_cols=33 Identities=36% Similarity=0.563 Sum_probs=31.0
Q ss_pred ccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 527 ~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
.+|.|||||||+++.|.|||+||+|+|++||..
T Consensus 354 liG~NGsGKST~~~LLtGL~~PqsG~I~ldg~p 386 (546)
T COG4615 354 LIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKP 386 (546)
T ss_pred EECCCCCcHHHHHHHHhcccCCCCCceeECCcc
Confidence 379999999999999999999999999999875
No 456
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.33 E-value=4e-07 Score=95.86 Aligned_cols=128 Identities=21% Similarity=0.283 Sum_probs=79.1
Q ss_pred cccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCc-cccccccccC
Q psy845 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP-VLFNGIVGRT 531 (677)
Q Consensus 453 VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~-~lf~~~~~~n 531 (677)
-....+.+++-|++++|+||.-+=+=|+ ..+-+|++=++.+. ...... .+.+ +-.+-++. ..--+.+|.|
T Consensus 50 ~~~~~~~tlpgG~Rv~i~~~p~~~~g~v----~tIR~~s~~~~r~~-~~~~~~-~~~~---l~~l~~~~~~~~~~i~g~~ 120 (270)
T TIGR02858 50 ELKQGYITIEGGHRVGLAGRCVTENGKV----KTIKNVSSLNIRIA-REKLGA-ADKL---LPYLVRNNRVLNTLIISPP 120 (270)
T ss_pred ccccceEEcCCCcEEEEEccceecCCEE----EEEEcccccEEEec-cccCCc-HHHH---HHHHHhCCCeeEEEEEcCC
Confidence 3566789999999999999964311111 01112222233321 111111 0111 01111111 1122566999
Q ss_pred CCCCchhHHHHHHhhhhccccccccccchhhh-hHHHHhhhcccccccccccccchhhc
Q psy845 532 GAGKSSLLVALFRLVELSSGQIKIDDFDIASV-ELETLRSRLSVIPQDPVLFNGTIRYN 589 (677)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~-~~~~LR~~I~~V~Qd~~LFsgTIrEN 589 (677)
|||||||+++|.|+.+|++|++.++|.++... +..+++..++++||+..--..++.||
T Consensus 121 g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~ 179 (270)
T TIGR02858 121 QCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDG 179 (270)
T ss_pred CCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccccccccccccc
Confidence 99999999999999999999999999999865 35788888999999763323455555
No 457
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.33 E-value=5.2e-07 Score=98.55 Aligned_cols=41 Identities=34% Similarity=0.389 Sum_probs=32.0
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCCCC--Ccc-EEEECCEec
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLVEL--SSG-QIKIDDFDI 502 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y~p--~~G-~I~IdG~dI 502 (677)
++|..++|+|||||||||+++.|++.+.+ .+| .|.....++
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi 175 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI 175 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc
Confidence 58999999999999999999999999853 333 555444333
No 458
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.32 E-value=2.9e-07 Score=92.49 Aligned_cols=35 Identities=23% Similarity=0.228 Sum_probs=29.7
Q ss_pred CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcC
Q psy845 451 PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 451 ~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
++|++|++++. |+.++|+|||||||||++|.+++.
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHH
Confidence 35778776654 799999999999999999999763
No 459
>PRK08149 ATP synthase SpaL; Validated
Probab=98.31 E-value=5.5e-07 Score=100.28 Aligned_cols=68 Identities=18% Similarity=0.272 Sum_probs=59.1
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCc---cEEEECCEecccccHHHhh----hhcccccCC
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS---GQIKIDDFDIASVELETLR----SRLSVIPQD 520 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~---G~I~IdG~dI~~l~~~~~~----~~i~~v~q~ 520 (677)
.+++++ +++.+||+++|+|+||+|||||++.+++..+++. |.|-.+|.+++++..+.++ +++++|...
T Consensus 140 ~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~ 214 (428)
T PRK08149 140 RAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYAT 214 (428)
T ss_pred EEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC
Confidence 589999 9999999999999999999999999999999988 9999999999887554443 566777543
No 460
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.30 E-value=2.9e-07 Score=92.77 Aligned_cols=50 Identities=32% Similarity=0.579 Sum_probs=45.7
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIP 576 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~ 576 (677)
|..|+|||||||+++||-.|..||+|++.+||.|... ++...|++||+++
T Consensus 32 GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IGVl~ 81 (245)
T COG4555 32 GLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIGVLF 81 (245)
T ss_pred EEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcceec
Confidence 6789999999999999999999999999999999876 4567899999876
No 461
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.30 E-value=3.3e-06 Score=84.56 Aligned_cols=38 Identities=29% Similarity=0.436 Sum_probs=31.2
Q ss_pred EEEEEcCCCCChHHHH-HHHhcCCCC-----------------CccEEEECCEecc
Q psy845 466 NIGIVGRTGAGKSSLL-VALFRLVEL-----------------SSGQIKIDDFDIA 503 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi-~LL~r~y~p-----------------~~G~I~IdG~dI~ 503 (677)
+++++|++|||||||+ +++.|.+++ ++|.+.+++.|..
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~ 66 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTA 66 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECC
Confidence 7999999999999999 688888764 4567777777764
No 462
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.29 E-value=2.4e-07 Score=98.82 Aligned_cols=55 Identities=40% Similarity=0.628 Sum_probs=49.3
Q ss_pred cccccCCCCCchhHHHHHHhhh-h----ccccccccccchhhhhHHHHh----hhccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVE-L----SSGQIKIDDFDIASVELETLR----SRLSVIPQDPV 580 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~-~----~~g~i~~~~~~~~~~~~~~LR----~~I~~V~Qd~~ 580 (677)
|.||++||||||+.++|+||.+ | .+|+|.++|.|+.+++.+++| +.||+|+|||.
T Consensus 35 giVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~ 98 (316)
T COG0444 35 GIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPM 98 (316)
T ss_pred EEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCch
Confidence 7799999999999999999997 3 789999999999999887654 49999999984
No 463
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.29 E-value=2.3e-07 Score=94.36 Aligned_cols=55 Identities=36% Similarity=0.526 Sum_probs=52.1
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV 580 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~ 580 (677)
..+|-||||||||+++|.|-.+|++|+|.+||.|++..+...=-..++-|+|||-
T Consensus 36 tViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~ 90 (263)
T COG1101 36 TVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPL 90 (263)
T ss_pred EEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchh
Confidence 3579999999999999999999999999999999999999998899999999995
No 464
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.28 E-value=2.4e-06 Score=95.32 Aligned_cols=68 Identities=19% Similarity=0.256 Sum_probs=57.3
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV 505 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l 505 (677)
.++-++++-.|..+ ..++++ .+++.+||+++|+|++|+|||||++.|+|..+|+.|.|...|+..+++
T Consensus 130 ~~~r~~i~~~l~TG-iraID~-ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~ev 197 (432)
T PRK06793 130 AFEREEITDVFETG-IKSIDS-MLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGREV 197 (432)
T ss_pred chheechhhccCCC-CEEEec-cceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCcccH
Confidence 45666777777654 358888 499999999999999999999999999999999999998887765554
No 465
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.27 E-value=3.1e-07 Score=94.86 Aligned_cols=52 Identities=23% Similarity=0.560 Sum_probs=46.3
Q ss_pred cccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc
Q psy845 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP 579 (677)
Q Consensus 524 f~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~ 579 (677)
.-|.+|.|||||||.+.||++|.+|++|+|-.+|.+++ ...+++|||.|.+-
T Consensus 30 i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~----~~~~~rIGyLPEER 81 (300)
T COG4152 30 IFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLS----QEIKNRIGYLPEER 81 (300)
T ss_pred EEEeecCCCCCccchHHHHhccCCccCceEEEcCcchh----hhhhhhcccChhhh
Confidence 34889999999999999999999999999999999954 45678999999875
No 466
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.25 E-value=9.5e-07 Score=87.16 Aligned_cols=55 Identities=25% Similarity=0.308 Sum_probs=46.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCc
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP 521 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~ 521 (677)
|+.++|+|||||||||++++|++...| .+.+++..+........++.+++++|+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEF 56 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHH
Confidence 889999999999999999999998765 5888888887655556677888888873
No 467
>PRK15494 era GTPase Era; Provisional
Probab=98.22 E-value=8.1e-07 Score=96.23 Aligned_cols=54 Identities=20% Similarity=0.335 Sum_probs=50.0
Q ss_pred CCccEEEEeeeEEeCCCCCccccceeeEEeCCc-------EEEEEcCCCCChHHHHHHHhcC
Q psy845 433 RQGTIKFKNVSLRYRDNWPLVLANVSFRINHGE-------NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 433 ~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE-------~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
..|.++++|++|+|+ ..+++++++++++++|| ++++||++|+|||||++.+.+-
T Consensus 15 ~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~ 75 (339)
T PRK15494 15 FKGDTEALAAAVRED-ASTGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGE 75 (339)
T ss_pred hCCccccccccccCC-CCcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCC
Confidence 568999999999999 44679999999999999 9999999999999999999875
No 468
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.19 E-value=2.2e-06 Score=83.21 Aligned_cols=26 Identities=42% Similarity=0.496 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCCC
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLVE 489 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y~ 489 (677)
|+.++|+|||||||||+++.|++.++
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 78999999999999999999999764
No 469
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.18 E-value=4.9e-07 Score=94.49 Aligned_cols=37 Identities=41% Similarity=0.643 Sum_probs=34.5
Q ss_pred ccccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 523 LFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 523 lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
=+.+.+|.||||||||+|+|.|+.+|++|+|++||.+
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~ 65 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKD 65 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCc
Confidence 3567899999999999999999999999999999987
No 470
>PRK00064 recF recombination protein F; Reviewed
Probab=98.14 E-value=6.7e-06 Score=89.84 Aligned_cols=33 Identities=30% Similarity=0.576 Sum_probs=28.1
Q ss_pred ccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcC
Q psy845 454 LANVSFRINHGENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 454 LknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++++..+| ...|+|||||||||++.++..+
T Consensus 14 ~~~~~l~~~~~-~~~i~G~NgsGKT~lleai~~l 46 (361)
T PRK00064 14 YEELDLELSPG-VNVLVGENGQGKTNLLEAIYLL 46 (361)
T ss_pred ccceEEEecCC-eEEEECCCCCCHHHHHHHHHHh
Confidence 45678888888 8899999999999999998753
No 471
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.14 E-value=9.2e-07 Score=88.45 Aligned_cols=34 Identities=35% Similarity=0.494 Sum_probs=31.5
Q ss_pred cccccCCCCCchhHHHHHHhhh---hccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVE---LSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~---~~~g~i~~~~~~ 559 (677)
+.+|.||||||||+++|.|+++ |++|+|.+||.+
T Consensus 37 ~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 37 LVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred EEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 5689999999999999999999 899999999864
No 472
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.13 E-value=4.8e-06 Score=94.69 Aligned_cols=65 Identities=18% Similarity=0.207 Sum_probs=58.3
Q ss_pred EEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccc
Q psy845 439 FKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV 505 (677)
Q Consensus 439 fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l 505 (677)
++|++..|++. .+++++++.+..|+.++++||+||||||+++.|.|+.+|.+|++.+++..|.++
T Consensus 187 ~~d~~~v~Gq~--~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~ 251 (506)
T PRK09862 187 QHDLSDVIGQE--QGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSL 251 (506)
T ss_pred ccCeEEEECcH--HHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhh
Confidence 45777778643 599999999999999999999999999999999999999999999998887665
No 473
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.13 E-value=8.3e-07 Score=88.79 Aligned_cols=42 Identities=31% Similarity=0.481 Sum_probs=37.5
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHH
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET 567 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~ 567 (677)
+.+|.||||||||+++|.|+++|++|+|.++|.++.+.+...
T Consensus 32 ~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~ 73 (214)
T TIGR02673 32 FLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQ 73 (214)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHH
Confidence 568999999999999999999999999999999887665544
No 474
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.11 E-value=2.3e-06 Score=107.32 Aligned_cols=68 Identities=18% Similarity=0.124 Sum_probs=59.9
Q ss_pred ccccchhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCC-CCCCCChHHHH------HHHHHHHHhccchhh
Q psy845 581 LFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV-QGDQLSLGEKQ------LLCLARALLRKTKKK 651 (677)
Q Consensus 581 LFsgTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v-~G~~LSGGQRQ------RIaIARALLr~p~IL 651 (677)
.|+||++|||.+..+++++ ++|++.++.++|+..+|.| ||.+ ...+||||||| |++||||++++|+++
T Consensus 1153 ~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il 1227 (1311)
T TIGR00606 1153 TYRGQDIEYIEIRSDADEN--VSASDKRRNYNYRVVMLKG-DTALDMRGRCSAGQKVLASLIIRLALAETFCLNCGII 1227 (1311)
T ss_pred HcCccHHHHhhcCCCCChH--HHHHHHcCchHHHhccCCC-CeecCCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEE
Confidence 3799999999984455555 7899999999999999999 9988 45699999999 999999999999977
No 475
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.09 E-value=3.3e-06 Score=84.59 Aligned_cols=37 Identities=27% Similarity=0.362 Sum_probs=29.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCC-ccEEEECCEec
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVELS-SGQIKIDDFDI 502 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~p~-~G~I~IdG~dI 502 (677)
.+.|+|||||||||+++.+++.+++. +|.|...+.++
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~ 40 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPI 40 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCc
Confidence 68999999999999999999988754 56766654444
No 476
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.09 E-value=1.1e-06 Score=87.82 Aligned_cols=43 Identities=30% Similarity=0.523 Sum_probs=37.8
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHH
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL 568 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~L 568 (677)
+.+|.||||||||+++|.|+++|++|+|.+||.++...+....
T Consensus 31 ~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~ 73 (214)
T cd03292 31 FLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAI 73 (214)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHH
Confidence 5689999999999999999999999999999998876655443
No 477
>PLN02796 D-glycerate 3-kinase
Probab=98.09 E-value=1.4e-06 Score=94.55 Aligned_cols=62 Identities=26% Similarity=0.456 Sum_probs=52.2
Q ss_pred CccccceeeEE---eCCcE-----EEEEcCCCCChHHHHHHHhcCCCCC---ccEEEECCEecccccHHHhhh
Q psy845 451 PLVLANVSFRI---NHGEN-----IGIVGRTGAGKSSLLVALFRLVELS---SGQIKIDDFDIASVELETLRS 512 (677)
Q Consensus 451 ~~VLknISl~I---~~GE~-----VAIVGpSGSGKSTLi~LL~r~y~p~---~G~I~IdG~dI~~l~~~~~~~ 512 (677)
..++++++..+ ++|+. +||+|++||||||+++.|.++.++. .|.|.+||..+...+..++++
T Consensus 79 ~~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~ 151 (347)
T PLN02796 79 LWCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAE 151 (347)
T ss_pred HHHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHh
Confidence 35889999888 67887 9999999999999999999999875 588999999987655555544
No 478
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.08 E-value=9.6e-07 Score=86.99 Aligned_cols=35 Identities=40% Similarity=0.607 Sum_probs=33.1
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccch
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 560 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 560 (677)
+.+|.||||||||+++|.|+++|++|+|.++|.++
T Consensus 22 ~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~ 56 (190)
T TIGR01166 22 ALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPL 56 (190)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEc
Confidence 67899999999999999999999999999999875
No 479
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.07 E-value=4.3e-06 Score=82.52 Aligned_cols=55 Identities=22% Similarity=0.221 Sum_probs=41.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCcc
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV 522 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~ 522 (677)
+||.++++|+|||||||+++.|+++..+ +.+||.++.... ..-+...|+.+|+..
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~~-~~r~~~~g~~~~~~~ 56 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPAK-NIDKMSQGIPLTDED 56 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCHh-HHHHHhcCCCCCccc
Confidence 6999999999999999999999999877 588998875431 112223556666543
No 480
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.07 E-value=4.6e-06 Score=78.91 Aligned_cols=87 Identities=23% Similarity=0.239 Sum_probs=58.3
Q ss_pred EEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhh
Q psy845 467 IGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLV 546 (677)
Q Consensus 467 VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~ 546 (677)
++|+|||||||||+++.|++.+++.-+.+. ... -.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v------~~t---------------------------------------Tr 36 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSV------SHT---------------------------------------TR 36 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecc------ccc---------------------------------------cc
Confidence 789999999999999999999865433221 000 01
Q ss_pred hhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHHH
Q psy845 547 ELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALE 606 (677)
Q Consensus 547 ~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~ 606 (677)
+|..|+ .+|.++.-.+.++.++. +.|+.++..++...|. + ....+++.++.+
T Consensus 37 ~p~~~e--~~g~~~~~v~~~~~~~~---~~~~~f~e~~~~~~~~-y--g~~~~~i~~~~~ 88 (137)
T cd00071 37 KPRPGE--VDGVDYHFVSKEEFERL---IENGEFLEWAEFHGNY-Y--GTSKAAVEEALA 88 (137)
T ss_pred CCCCCc--cCCceeEEeCHHHHHHH---HHcCCeEEEEEEcCEE-e--cCcHHHHHHHHh
Confidence 344454 47777777777777764 6688889999998885 2 233455555443
No 481
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.06 E-value=1.2e-06 Score=90.96 Aligned_cols=36 Identities=42% Similarity=0.657 Sum_probs=33.6
Q ss_pred cccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 524 f~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
|...||.+||||||++|||.||++|++|+|++||+|
T Consensus 29 f~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~ 64 (309)
T COG1125 29 FLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGED 64 (309)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCCCceEEECCee
Confidence 445789999999999999999999999999999998
No 482
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.06 E-value=2.6e-06 Score=85.45 Aligned_cols=63 Identities=21% Similarity=0.286 Sum_probs=44.3
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCCCC-CccEEEECCEecccccHHHhhhhcccccCCccccc
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLVEL-SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 525 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~ 525 (677)
++|+.+||+|||||||||+++.|++.+++ ..+.+..|+.-... +....+++.++.+|+|..++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~-~~~~~~~~~~~~~~~~~~~~ 67 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQ-SHLEMAERKKTNFDHPDAFD 67 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccCh-hhCCHHHhcCCCCCCccHhH
Confidence 57999999999999999999999999876 33445555542211 11123556777888776665
No 483
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.05 E-value=1.2e-06 Score=87.96 Aligned_cols=43 Identities=40% Similarity=0.590 Sum_probs=38.0
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHH
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL 568 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~L 568 (677)
+.+|.||||||||+++|.|+++|++|+|.++|.++...+....
T Consensus 34 ~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~ 76 (218)
T cd03255 34 AIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKEL 76 (218)
T ss_pred EEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHH
Confidence 6789999999999999999999999999999998776655543
No 484
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.05 E-value=1.4e-06 Score=94.01 Aligned_cols=57 Identities=26% Similarity=0.439 Sum_probs=47.1
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG 584 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg 584 (677)
-+.+|+||||||||+++|+|+.+|++|+|++||.++.+.+.+++++.-. +-.++|+.
T Consensus 50 ~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~---~i~~v~Q~ 106 (331)
T PRK15079 50 LGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRS---DIQMIFQD 106 (331)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhC---ceEEEecC
Confidence 3678999999999999999999999999999999999888877776432 33455544
No 485
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.04 E-value=1.3e-06 Score=87.13 Aligned_cols=34 Identities=44% Similarity=0.590 Sum_probs=31.8
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|.||||||||+++|.|+.+|++|+|.++|.+
T Consensus 31 ~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~ 64 (211)
T cd03225 31 LIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKD 64 (211)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE
Confidence 5689999999999999999999999999998865
No 486
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.03 E-value=3.5e-06 Score=94.24 Aligned_cols=53 Identities=26% Similarity=0.393 Sum_probs=43.6
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC-CccEEEECC---Eecccc
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-SSGQIKIDD---FDIASV 505 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-~~G~I~IdG---~dI~~l 505 (677)
.+++++ +++.+||+++|+|+||+|||||++.++|..++ +.|.|...| .++.++
T Consensus 153 ~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~ 209 (442)
T PRK06315 153 RCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREF 209 (442)
T ss_pred EEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHH
Confidence 478887 99999999999999999999999999998843 446777644 555554
No 487
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.03 E-value=5.5e-06 Score=80.61 Aligned_cols=62 Identities=23% Similarity=0.225 Sum_probs=46.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEE-----------CCEecccccHHHhh-----hhcccccCCcccccc
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLVELSSGQIKI-----------DDFDIASVELETLR-----SRLSVIPQDPVLFNG 526 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~I-----------dG~dI~~l~~~~~~-----~~i~~v~q~~~lf~~ 526 (677)
|+.++|+|||||||||+++.|++.+.+. |.+.+ +|.+....+.++.. .+++.+.|.+.++.|
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 78 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYG 78 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence 6789999999999999999999987654 54544 66666666555543 348888888777664
No 488
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.03 E-value=1.3e-06 Score=85.40 Aligned_cols=34 Identities=44% Similarity=0.627 Sum_probs=31.5
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|+||||||||+++|.|+++|++|+|.++|.+
T Consensus 30 ~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~ 63 (178)
T cd03229 30 ALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGED 63 (178)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE
Confidence 6789999999999999999999999999998764
No 489
>KOG0066|consensus
Probab=98.02 E-value=6.7e-06 Score=90.47 Aligned_cols=65 Identities=26% Similarity=0.437 Sum_probs=50.1
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhc--CCCCCccEEEECCEec
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFR--LVELSSGQIKIDDFDI 502 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r--~y~p~~G~I~IdG~dI 502 (677)
+|.++|.+.+-.+. ...-|-|++|-.|.++|+|||+|-|||||++-+.. +--|..=.+++..+++
T Consensus 264 DIKiEnF~ISA~Gk--~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEv 330 (807)
T KOG0066|consen 264 DIKIENFDISAQGK--LLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEV 330 (807)
T ss_pred cceeeeeeeecccc--eeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeee
Confidence 58888888776554 57889999999999999999999999999998863 3334444555555444
No 490
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.02 E-value=1.4e-06 Score=87.33 Aligned_cols=42 Identities=26% Similarity=0.491 Sum_probs=37.2
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHH
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET 567 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~ 567 (677)
+.+|.||||||||+++|.|+++|++|+|.++|.++...+..+
T Consensus 33 ~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 74 (216)
T TIGR00960 33 FLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGRE 74 (216)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhH
Confidence 568999999999999999999999999999999877655443
No 491
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.02 E-value=1.5e-06 Score=87.90 Aligned_cols=42 Identities=31% Similarity=0.509 Sum_probs=37.7
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHH
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET 567 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~ 567 (677)
+.+|+||||||||+++|.|+++|++|+|.++|.++...+.+.
T Consensus 40 ~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~ 81 (228)
T PRK10584 40 ALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEA 81 (228)
T ss_pred EEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHH
Confidence 568999999999999999999999999999999887666544
No 492
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.02 E-value=1.5e-06 Score=87.01 Aligned_cols=34 Identities=38% Similarity=0.588 Sum_probs=31.8
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|.||||||||+++|.|+++|++|+|.++|.+
T Consensus 30 ~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~ 63 (213)
T cd03259 30 ALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRD 63 (213)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE
Confidence 5689999999999999999999999999998875
No 493
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.01 E-value=1.1e-07 Score=111.16 Aligned_cols=159 Identities=17% Similarity=0.096 Sum_probs=88.6
Q ss_pred cHHHHHHHHHchHHHHHHhccHHHHHHHH-----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 288 PIFSNVSSTVSGLHIIHVFHKEQDFVRRF-----CEQYDENSTTLFLCSM----AMRWLAVRIDVLAVIAMAIITGLTVA 358 (677)
Q Consensus 288 ~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~-----~~~~~~~~~~~~~~~~----~~~~~~~~l~~l~~l~~~l~~g~~lv 358 (677)
...+.+.|.+.|+.+||..+.|+.....+ .+...+..+....... ...+... +.... ..+++++|.+++
T Consensus 41 ~~~~~v~Ev~~~~~tIK~~~~e~~~~~~~~~~~~~~l~~~l~~~~v~~~~~~~~~~~~~~~-i~~~~-~~~il~ig~~~v 118 (644)
T PRK10733 41 VNQDQVREARINGREINVTKKDSNRYTTYIPVNDPKLLDNLLTKNVKVVGEPPEEPSLLAS-IFISW-FPMLLLIGVWIF 118 (644)
T ss_pred HHcCCeEEEEEeCCEEEEEEcCCceEEEeCCCCCHHHHHHHHHcCCeEEecCcccchHHHH-HHHHH-HHHHHHHHHHHH
Confidence 34567888899999999998877554444 2222222221111000 0111111 11111 244566777788
Q ss_pred HhcCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccccccccccCCCCCc
Q psy845 359 FHGSVSPA---LAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQG 435 (677)
Q Consensus 359 ~~G~ls~g---~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g 435 (677)
..|.++.| .+..+..+...+..+ ......+.++.....+.+|+.++.+. ..+ + .
T Consensus 119 ~~g~mt~G~~~~l~af~~~~~~~~~~-~~~~~~~~di~g~~~~~~~l~~i~~~-~~~---~----------------~-- 175 (644)
T PRK10733 119 FMRQMQGGGGKGAMSFGKSKARMLTE-DQIKTTFADVAGCDEAKEEVAELVEY-LRE---P----------------S-- 175 (644)
T ss_pred HHhhhcCCCCceeEEeccccccccCc-hhhhCcHHHHcCHHHHHHHHHHHHHH-hhC---H----------------H--
Confidence 88887766 333333334444444 44555566666666777777776631 100 0 0
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL 490 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p 490 (677)
..+++..++++| +.++||+|+||||+++.+++-...
T Consensus 176 -----------------~~~~~~~~~~~g--ill~G~~G~GKt~~~~~~a~~~~~ 211 (644)
T PRK10733 176 -----------------RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKV 211 (644)
T ss_pred -----------------HHHhcCCCCCCc--EEEECCCCCCHHHHHHHHHHHcCC
Confidence 001112245566 999999999999999999996653
No 494
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.00 E-value=5.3e-06 Score=92.64 Aligned_cols=69 Identities=19% Similarity=0.221 Sum_probs=59.6
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV 505 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l 505 (677)
+.++.++++-.+..+ ..+++++ +++.+||+++|+|++|+|||||++.++|..+++.|.+...|..-+++
T Consensus 128 ~~~~r~~v~~~l~tG-i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeRgrEv 196 (433)
T PRK07594 128 PAMVRQPITQPLMTG-IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV 196 (433)
T ss_pred CceeccCHhheeCCC-ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCCchHH
Confidence 357778888888655 3599999 99999999999999999999999999999999999988877665554
No 495
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.00 E-value=1.7e-06 Score=86.55 Aligned_cols=36 Identities=44% Similarity=0.692 Sum_probs=33.0
Q ss_pred cccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 524 f~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
.-+.+|.||||||||+++|.|+++|++|+|.++|.+
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~ 62 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQD 62 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCc
Confidence 447789999999999999999999999999998864
No 496
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.00 E-value=1.4e-06 Score=80.69 Aligned_cols=34 Identities=50% Similarity=0.655 Sum_probs=31.5
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|+||||||||+++|.|+++|++|+|.++|.+
T Consensus 15 ~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~ 48 (137)
T PF00005_consen 15 AIVGPNGSGKSTLLKALAGLLPPDSGSILINGKD 48 (137)
T ss_dssp EEEESTTSSHHHHHHHHTTSSHESEEEEEETTEE
T ss_pred EEEccCCCccccceeeeccccccccccccccccc
Confidence 5679999999999999999999999999988776
No 497
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.00 E-value=5e-06 Score=94.78 Aligned_cols=34 Identities=29% Similarity=0.472 Sum_probs=31.6
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|.||||||||+++|.|+.+|++|+|.++|.+
T Consensus 54 gIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~ 87 (549)
T PRK13545 54 GIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSA 87 (549)
T ss_pred EEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEe
Confidence 5689999999999999999999999999999854
No 498
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.00 E-value=1.9e-06 Score=85.86 Aligned_cols=55 Identities=35% Similarity=0.515 Sum_probs=50.6
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV 580 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~ 580 (677)
+.||+||+|||||+|||.|.++|.+|+|+++|....--+...--++|-+++|||.
T Consensus 43 aiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpn 97 (267)
T COG4167 43 AIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPN 97 (267)
T ss_pred EEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCc
Confidence 5689999999999999999999999999999998887777777789999999994
No 499
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.00 E-value=1.7e-06 Score=85.88 Aligned_cols=39 Identities=31% Similarity=0.542 Sum_probs=35.6
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhh
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE 564 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~ 564 (677)
+.+|.||||||||+++|.|+++|++|+|.++|.+++..+
T Consensus 28 ~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~ 66 (206)
T TIGR03608 28 AIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLN 66 (206)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccc
Confidence 568999999999999999999999999999999876554
No 500
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.99 E-value=1.7e-06 Score=86.60 Aligned_cols=32 Identities=47% Similarity=0.726 Sum_probs=29.8
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 557 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~ 557 (677)
+.+|.||||||||+++|.|+.+|++|+|.+||
T Consensus 29 ~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g 60 (213)
T cd03235 29 AIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG 60 (213)
T ss_pred EEECCCCCCHHHHHHHHcCCCCCCCCEEEECC
Confidence 56899999999999999999999999988865
Done!