Query psy845
Match_columns 677
No_of_seqs 313 out of 2966
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 19:10:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy845.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/845hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 5.2E-77 1.8E-81 728.8 63.8 337 179-525 161-505 (1321)
2 3g5u_A MCG1178, multidrug resi 100.0 5.6E-69 1.9E-73 656.5 53.4 337 179-525 133-477 (1284)
3 3qf4_A ABC transporter, ATP-bi 100.0 3.8E-66 1.3E-70 587.1 57.4 435 174-677 83-556 (587)
4 3b5x_A Lipid A export ATP-bind 100.0 2.4E-65 8.1E-70 579.3 61.6 437 170-677 81-557 (582)
5 4a82_A Cystic fibrosis transme 100.0 8.6E-66 2.9E-70 582.7 53.8 444 165-677 68-554 (578)
6 3b60_A Lipid A export ATP-bind 100.0 5.2E-65 1.8E-69 576.5 60.2 430 177-677 88-557 (582)
7 3qf4_B Uncharacterized ABC tra 100.0 2.9E-66 9.8E-71 589.0 49.2 429 178-677 101-568 (598)
8 2yl4_A ATP-binding cassette SU 100.0 6.9E-64 2.4E-68 568.7 60.8 430 179-677 87-560 (595)
9 3nh6_A ATP-binding cassette SU 100.0 2.4E-49 8.2E-54 417.4 15.0 221 389-677 15-267 (306)
10 4f4c_A Multidrug resistance pr 100.0 1.6E-44 5.6E-49 442.1 36.5 434 178-677 818-1294(1321)
11 2ff7_A Alpha-hemolysin translo 100.0 1.8E-41 6.2E-46 346.4 19.9 186 434-677 5-222 (247)
12 1mv5_A LMRA, multidrug resista 100.0 5.1E-41 1.7E-45 341.6 14.6 182 437-677 2-216 (243)
13 3gd7_A Fusion complex of cysti 100.0 1.7E-40 6E-45 360.4 18.5 189 430-677 13-232 (390)
14 2ghi_A Transport protein; mult 100.0 6.9E-40 2.4E-44 337.1 18.5 184 435-677 16-232 (260)
15 2ixe_A Antigen peptide transpo 100.0 1.4E-39 4.8E-44 336.8 18.7 186 434-677 14-235 (271)
16 3g5u_A MCG1178, multidrug resi 100.0 1.1E-37 3.8E-42 381.0 34.7 433 180-677 775-1248(1284)
17 2pze_A Cystic fibrosis transme 100.0 5.2E-37 1.8E-41 309.7 16.9 172 435-677 5-208 (229)
18 2cbz_A Multidrug resistance-as 100.0 9.7E-37 3.3E-41 309.5 15.5 171 436-677 3-207 (237)
19 3tif_A Uncharacterized ABC tra 100.0 1E-36 3.6E-41 308.9 14.1 178 437-677 2-224 (235)
20 3gfo_A Cobalt import ATP-bindi 100.0 1.5E-36 5E-41 315.4 15.2 176 436-677 7-223 (275)
21 1ji0_A ABC transporter; ATP bi 100.0 2E-35 6.8E-40 300.2 15.5 176 436-677 6-218 (240)
22 3tui_C Methionine import ATP-b 100.0 7.3E-36 2.5E-40 321.5 13.0 179 435-677 23-243 (366)
23 2pcj_A ABC transporter, lipopr 100.0 8.7E-36 3E-40 299.9 12.6 176 436-677 4-218 (224)
24 4g1u_C Hemin import ATP-bindin 100.0 2.7E-35 9.1E-40 304.2 15.7 173 436-677 11-227 (266)
25 1g6h_A High-affinity branched- 100.0 3.6E-35 1.2E-39 301.1 16.2 174 436-677 7-232 (257)
26 2olj_A Amino acid ABC transpor 100.0 2.3E-35 8E-40 304.4 14.8 175 436-677 24-238 (263)
27 1vpl_A ABC transporter, ATP-bi 100.0 2.3E-35 7.8E-40 303.3 13.3 174 434-677 13-225 (256)
28 2yz2_A Putative ABC transporte 100.0 1.1E-34 3.7E-39 299.2 16.8 171 437-677 3-217 (266)
29 3fvq_A Fe(3+) IONS import ATP- 100.0 6.1E-35 2.1E-39 313.8 14.3 175 436-677 4-218 (359)
30 1b0u_A Histidine permease; ABC 100.0 1E-34 3.6E-39 298.8 15.2 176 436-677 6-232 (262)
31 2ihy_A ABC transporter, ATP-bi 100.0 1.2E-34 4.1E-39 301.4 13.5 173 436-677 21-242 (279)
32 3rlf_A Maltose/maltodextrin im 100.0 1.2E-34 4.2E-39 313.5 12.9 171 436-677 3-213 (381)
33 2yyz_A Sugar ABC transporter, 100.0 3.3E-34 1.1E-38 308.2 15.4 171 436-677 3-213 (359)
34 2qi9_C Vitamin B12 import ATP- 100.0 4.5E-34 1.5E-38 292.6 15.3 167 437-677 5-212 (249)
35 2d2e_A SUFC protein; ABC-ATPas 100.0 3.9E-34 1.3E-38 292.3 13.4 172 437-677 4-223 (250)
36 2bbs_A Cystic fibrosis transme 100.0 4.2E-34 1.4E-38 299.0 13.9 168 434-677 38-237 (290)
37 1oxx_K GLCV, glucose, ABC tran 100.0 2.5E-34 8.4E-39 308.5 11.7 175 437-677 4-220 (353)
38 2it1_A 362AA long hypothetical 100.0 3.6E-34 1.2E-38 308.2 12.9 171 436-677 3-213 (362)
39 1z47_A CYSA, putative ABC-tran 100.0 4.3E-34 1.5E-38 306.8 12.9 173 435-677 13-225 (355)
40 2onk_A Molybdate/tungstate ABC 100.0 9.9E-34 3.4E-38 288.4 14.9 167 437-677 2-206 (240)
41 3d31_A Sulfate/molybdate ABC t 100.0 5.7E-34 1.9E-38 305.2 13.6 169 437-677 2-207 (348)
42 1v43_A Sugar-binding transport 100.0 6.7E-34 2.3E-38 307.1 14.2 171 436-677 11-221 (372)
43 1g29_1 MALK, maltose transport 100.0 9.8E-34 3.3E-38 305.8 12.4 177 436-677 3-219 (372)
44 2zu0_C Probable ATP-dependent 100.0 3.4E-33 1.2E-37 288.3 13.8 176 435-677 19-244 (267)
45 1sgw_A Putative ABC transporte 100.0 6.9E-33 2.4E-37 278.0 10.2 141 435-651 9-155 (214)
46 2pjz_A Hypothetical protein ST 100.0 1.6E-32 5.4E-37 283.3 12.8 167 437-677 2-205 (263)
47 2nq2_C Hypothetical ABC transp 100.0 5.3E-32 1.8E-36 277.5 13.5 159 436-675 4-206 (253)
48 3bk7_A ABC transporter ATP-bin 100.0 1.9E-30 6.6E-35 295.8 5.8 104 526-651 386-493 (607)
49 2v9p_A Replication protein E1; 100.0 2.1E-32 7.2E-37 288.3 -10.5 204 361-677 38-256 (305)
50 1yqt_A RNAse L inhibitor; ATP- 100.0 3E-30 1E-34 290.4 5.1 104 526-651 316-423 (538)
51 3j16_B RLI1P; ribosome recycli 99.9 1.1E-27 3.9E-32 273.0 7.6 129 526-676 382-548 (608)
52 2iw3_A Elongation factor 3A; a 99.9 1.9E-24 6.4E-29 256.6 12.9 76 436-522 671-746 (986)
53 3ozx_A RNAse L inhibitor; ATP 99.9 1.8E-24 6.2E-29 243.6 9.0 135 435-651 268-407 (538)
54 3ux8_A Excinuclease ABC, A sub 99.9 2.1E-23 7E-28 239.8 9.0 177 451-677 31-288 (670)
55 3ux8_A Excinuclease ABC, A sub 99.9 4.1E-23 1.4E-27 237.4 6.4 229 441-677 325-630 (670)
56 2iw3_A Elongation factor 3A; a 99.9 2.7E-21 9.4E-26 229.6 17.6 158 435-676 434-623 (986)
57 2f1r_A Molybdopterin-guanine d 99.8 9.6E-24 3.3E-28 204.7 -5.9 114 465-652 3-126 (171)
58 2npi_A Protein CLP1; CLP1-PCF1 99.8 7.2E-24 2.5E-28 234.6 -9.0 131 437-650 119-258 (460)
59 1z6g_A Guanylate kinase; struc 99.8 7E-23 2.4E-27 204.1 -5.0 155 452-673 11-193 (218)
60 3ozx_A RNAse L inhibitor; ATP 99.8 2E-21 6.8E-26 218.9 5.7 170 441-675 4-214 (538)
61 4aby_A DNA repair protein RECN 99.8 2.4E-20 8.2E-25 200.7 6.9 115 453-589 50-166 (415)
62 3pih_A Uvrabc system protein A 99.8 8.9E-20 3.1E-24 215.9 7.7 30 452-481 598-627 (916)
63 2gza_A Type IV secretion syste 99.8 1.1E-22 3.6E-27 218.3 -19.5 147 438-644 137-302 (361)
64 2vf7_A UVRA2, excinuclease ABC 99.8 2.1E-19 7.1E-24 211.2 6.5 46 435-487 501-547 (842)
65 2r6f_A Excinuclease ABC subuni 99.7 1.2E-18 4E-23 206.1 7.4 44 435-485 628-671 (972)
66 2ygr_A Uvrabc system protein A 99.7 9.7E-18 3.3E-22 198.9 12.5 44 435-485 646-689 (993)
67 3b85_A Phosphate starvation-in 99.7 5.9E-20 2E-24 183.1 -5.7 40 452-496 14-53 (208)
68 3aez_A Pantothenate kinase; tr 99.7 7.3E-21 2.5E-25 200.7 -13.5 154 434-672 41-225 (312)
69 1e69_A Chromosome segregation 99.7 2.4E-17 8.2E-22 173.3 11.6 217 436-676 5-301 (322)
70 3bk7_A ABC transporter ATP-bin 99.7 4.9E-18 1.7E-22 193.8 6.4 164 440-674 95-304 (607)
71 2dpy_A FLII, flagellum-specifi 99.7 1.1E-19 3.6E-24 200.2 -7.5 168 435-677 130-334 (438)
72 1yqt_A RNAse L inhibitor; ATP- 99.7 5.6E-18 1.9E-22 190.7 5.2 167 437-674 21-234 (538)
73 2pt7_A CAG-ALFA; ATPase, prote 99.7 7.9E-20 2.7E-24 194.0 -9.5 58 439-501 151-208 (330)
74 3j16_B RLI1P; ribosome recycli 99.7 3.6E-17 1.2E-21 186.7 8.3 141 526-675 107-298 (608)
75 1lw7_A Transcriptional regulat 99.7 1.3E-18 4.4E-23 185.8 -4.4 141 453-653 157-325 (365)
76 2eyu_A Twitching motility prot 99.6 3.2E-19 1.1E-23 183.5 -11.1 175 438-650 7-191 (261)
77 3sop_A Neuronal-specific septi 99.6 1.6E-18 5.5E-23 179.1 -6.1 111 466-646 4-115 (270)
78 1tq4_A IIGP1, interferon-induc 99.6 1.7E-17 5.9E-22 181.4 -0.5 121 451-651 36-188 (413)
79 2ewv_A Twitching motility prot 99.6 4E-18 1.4E-22 183.6 -6.7 133 452-650 126-302 (372)
80 2obl_A ESCN; ATPase, hydrolase 99.6 4.3E-17 1.5E-21 174.4 -1.5 67 435-503 44-110 (347)
81 4gp7_A Metallophosphoesterase; 99.6 1.7E-15 5.8E-20 145.0 5.4 30 456-485 1-30 (171)
82 1tf7_A KAIC; homohexamer, hexa 99.5 1.8E-17 6.2E-22 185.4 -10.5 57 445-502 20-79 (525)
83 1lvg_A Guanylate kinase, GMP k 99.5 1.9E-16 6.6E-21 155.2 -3.2 127 461-651 1-128 (198)
84 3b9q_A Chloroplast SRP recepto 99.5 1.3E-16 4.4E-21 167.5 -4.9 129 454-651 90-225 (302)
85 3qf7_A RAD50; ABC-ATPase, ATPa 99.5 6.4E-15 2.2E-19 158.1 7.2 32 453-485 13-44 (365)
86 1ye8_A Protein THEP1, hypothet 99.5 1.5E-15 5.2E-20 147.5 -0.5 34 466-504 2-35 (178)
87 1pui_A ENGB, probable GTP-bind 99.5 6.5E-15 2.2E-19 142.3 3.4 154 437-650 4-171 (210)
88 2og2_A Putative signal recogni 99.5 8.2E-16 2.8E-20 165.3 -3.9 128 455-651 148-282 (359)
89 2jeo_A Uridine-cytidine kinase 99.5 1.8E-16 6.3E-21 159.7 -8.5 38 451-488 12-49 (245)
90 1zp6_A Hypothetical protein AT 99.4 1.1E-14 3.8E-19 139.4 0.4 43 460-504 5-47 (191)
91 1htw_A HI0065; nucleotide-bind 99.4 1.5E-15 5.1E-20 145.3 -6.7 62 439-503 10-71 (158)
92 1rj9_A FTSY, signal recognitio 99.4 6.2E-14 2.1E-18 147.4 3.1 119 463-649 101-222 (304)
93 2qm8_A GTPase/ATPase; G protei 99.4 3.7E-15 1.3E-19 158.5 -7.4 87 437-525 30-120 (337)
94 1p9r_A General secretion pathw 99.4 5.7E-16 2E-20 169.6 -14.5 63 437-503 144-206 (418)
95 3c8u_A Fructokinase; YP_612366 99.4 5.3E-15 1.8E-19 145.3 -7.3 31 461-491 19-49 (208)
96 2rcn_A Probable GTPase ENGC; Y 99.3 7.5E-14 2.6E-18 150.1 -0.1 49 452-501 204-254 (358)
97 1odf_A YGR205W, hypothetical 3 99.3 6.9E-15 2.4E-19 153.6 -9.8 120 462-657 29-162 (290)
98 2vf7_A UVRA2, excinuclease ABC 99.3 3.3E-12 1.1E-16 150.5 8.5 121 547-677 296-465 (842)
99 1nij_A Hypothetical protein YJ 99.3 6.6E-14 2.3E-18 147.3 -5.7 132 464-651 4-163 (318)
100 2qag_B Septin-6, protein NEDD5 99.3 5.8E-13 2E-17 146.1 0.9 142 436-651 16-180 (427)
101 1u0l_A Probable GTPase ENGC; p 99.3 2.2E-12 7.5E-17 134.7 5.1 114 459-619 164-290 (301)
102 3b5x_A Lipid A export ATP-bind 99.3 2.4E-08 8E-13 113.2 37.9 35 525-559 372-406 (582)
103 2qag_C Septin-7; cell cycle, c 99.2 2E-13 7E-18 149.5 -4.9 128 435-649 10-138 (418)
104 4a74_A DNA repair and recombin 99.2 4.1E-12 1.4E-16 124.2 4.6 31 460-490 21-51 (231)
105 2i3b_A HCR-ntpase, human cance 99.2 1.2E-13 4.1E-18 135.6 -6.3 40 464-505 1-40 (189)
106 2o5v_A DNA replication and rep 99.2 5.9E-12 2E-16 135.3 6.3 33 453-486 16-48 (359)
107 2qnr_A Septin-2, protein NEDD5 99.2 1.8E-13 6E-18 143.2 -5.5 55 440-503 2-57 (301)
108 2yv5_A YJEQ protein; hydrolase 99.2 1.3E-12 4.4E-17 136.7 0.6 63 460-524 161-227 (302)
109 1znw_A Guanylate kinase, GMP k 99.2 8.3E-13 2.8E-17 129.5 -1.0 37 451-489 9-45 (207)
110 3asz_A Uridine kinase; cytidin 99.2 4.3E-13 1.5E-17 130.7 -4.0 30 461-490 3-32 (211)
111 3qf4_A ABC transporter, ATP-bi 99.2 7.1E-09 2.4E-13 117.8 29.4 35 525-559 372-406 (587)
112 1cr0_A DNA primase/helicase; R 99.2 1E-11 3.4E-16 127.9 5.0 48 452-499 23-71 (296)
113 3b60_A Lipid A export ATP-bind 99.2 1.2E-08 4.3E-13 115.4 30.5 35 525-559 372-406 (582)
114 2yl4_A ATP-binding cassette SU 99.2 2E-08 7E-13 114.0 31.9 35 525-559 373-407 (595)
115 4a82_A Cystic fibrosis transme 99.2 2.9E-09 9.8E-14 120.6 24.7 36 525-560 370-405 (578)
116 2x8a_A Nuclear valosin-contain 99.1 4.5E-13 1.5E-17 138.2 -7.2 124 451-651 33-159 (274)
117 1sq5_A Pantothenate kinase; P- 99.1 1.5E-12 5.3E-17 136.1 -3.6 83 434-525 35-141 (308)
118 2ehv_A Hypothetical protein PH 99.1 2.8E-12 9.4E-17 126.9 -2.8 61 437-501 7-69 (251)
119 1tf7_A KAIC; homohexamer, hexa 99.1 2.3E-11 7.8E-16 136.1 4.2 53 437-494 258-310 (525)
120 4e22_A Cytidylate kinase; P-lo 99.1 1.3E-11 4.5E-16 125.2 1.8 102 453-620 19-137 (252)
121 2oap_1 GSPE-2, type II secreti 99.1 2.5E-12 8.4E-17 144.2 -4.9 51 451-501 247-297 (511)
122 3szr_A Interferon-induced GTP- 99.1 3E-12 1E-16 146.1 -4.3 66 436-504 10-86 (608)
123 3qf4_B Uncharacterized ABC tra 99.1 3.3E-08 1.1E-12 112.5 27.8 36 525-560 384-419 (598)
124 3jvv_A Twitching mobility prot 99.1 6.6E-12 2.3E-16 134.7 -2.9 58 440-497 92-157 (356)
125 1cke_A CK, MSSA, protein (cyti 99.1 2.7E-12 9.2E-17 126.0 -5.9 105 463-623 4-118 (227)
126 2yhs_A FTSY, cell division pro 99.0 3.5E-11 1.2E-15 134.2 2.2 51 454-504 283-333 (503)
127 3tr0_A Guanylate kinase, GMP k 99.0 5.6E-11 1.9E-15 114.6 1.7 64 458-525 1-64 (205)
128 3euj_A Chromosome partition pr 99.0 1.9E-10 6.3E-15 128.2 3.6 64 438-506 8-71 (483)
129 1s96_A Guanylate kinase, GMP k 99.0 8.7E-11 3E-15 117.7 0.8 62 460-525 12-75 (219)
130 1pzn_A RAD51, DNA repair and r 99.0 1.5E-10 5.2E-15 123.5 2.4 49 453-501 119-175 (349)
131 4ad8_A DNA repair protein RECN 98.9 1.6E-10 5.6E-15 129.0 2.7 80 436-525 42-160 (517)
132 1t9h_A YLOQ, probable GTPase E 98.9 4.6E-11 1.6E-15 125.9 -2.9 66 459-525 168-236 (307)
133 2o8b_B DNA mismatch repair pro 98.9 4.2E-10 1.4E-14 135.3 3.4 53 435-489 749-813 (1022)
134 1w1w_A Structural maintenance 98.9 2.5E-09 8.5E-14 116.5 8.4 49 436-492 6-54 (430)
135 3lnc_A Guanylate kinase, GMP k 98.9 6.8E-10 2.3E-14 110.2 3.5 39 452-490 15-54 (231)
136 3e70_C DPA, signal recognition 98.9 6.1E-10 2.1E-14 118.3 3.3 46 460-505 125-170 (328)
137 1ewq_A DNA mismatch repair pro 98.9 9.8E-10 3.4E-14 128.5 5.0 56 434-494 548-607 (765)
138 3a00_A Guanylate kinase, GMP k 98.8 6.6E-10 2.3E-14 107.0 2.4 129 464-645 1-154 (186)
139 1kgd_A CASK, peripheral plasma 98.8 7.9E-10 2.7E-14 106.1 2.7 92 462-607 3-95 (180)
140 1iy2_A ATP-dependent metallopr 98.8 1.5E-11 5.3E-16 125.6 -10.7 61 438-504 51-111 (278)
141 1n0w_A DNA repair protein RAD5 98.8 7.9E-09 2.7E-13 101.7 9.1 42 460-501 20-68 (243)
142 3ney_A 55 kDa erythrocyte memb 98.8 1.3E-09 4.3E-14 108.2 3.4 96 458-607 13-109 (197)
143 1in4_A RUVB, holliday junction 98.8 3.2E-12 1.1E-16 134.8 -16.6 60 437-498 19-89 (334)
144 1udx_A The GTP-binding protein 98.8 1.1E-09 3.8E-14 119.9 1.9 36 453-488 146-181 (416)
145 1ixz_A ATP-dependent metallopr 98.8 2E-11 6.8E-16 122.6 -11.2 62 437-504 26-87 (254)
146 1qhl_A Protein (cell division 98.7 1.7E-10 5.9E-15 116.6 -5.9 75 436-520 9-91 (227)
147 2j41_A Guanylate kinase; GMP, 98.7 3.6E-09 1.2E-13 101.8 3.1 35 459-493 1-35 (207)
148 2w0m_A SSO2452; RECA, SSPF, un 98.7 9.4E-09 3.2E-13 99.9 4.8 51 452-502 10-61 (235)
149 3qkt_A DNA double-strand break 98.7 5.4E-08 1.8E-12 102.9 10.9 32 458-490 18-50 (339)
150 3thx_A DNA mismatch repair pro 98.7 1.6E-08 5.6E-13 120.5 6.8 50 435-484 630-682 (934)
151 3nwj_A ATSK2; P loop, shikimat 98.6 4.6E-09 1.6E-13 107.4 -0.5 53 435-488 16-72 (250)
152 3pih_A Uvrabc system protein A 98.5 2.7E-08 9.1E-13 118.4 4.2 52 626-677 461-550 (916)
153 3uie_A Adenylyl-sulfate kinase 98.5 3.5E-09 1.2E-13 103.0 -3.1 73 441-520 4-78 (200)
154 1vma_A Cell division protein F 98.5 2.8E-08 9.5E-13 104.6 2.3 47 457-503 97-143 (306)
155 3lda_A DNA repair protein RAD5 98.5 2.2E-07 7.6E-12 101.2 8.2 42 460-501 174-222 (400)
156 1nlf_A Regulatory protein REPA 98.4 6.6E-08 2.2E-12 98.8 3.5 33 461-495 27-59 (279)
157 4eun_A Thermoresistant glucoki 98.4 4.5E-08 1.5E-12 95.1 1.9 63 458-525 23-85 (200)
158 3tau_A Guanylate kinase, GMP k 98.4 9.1E-08 3.1E-12 93.9 4.0 78 462-590 6-84 (208)
159 2bdt_A BH3686; alpha-beta prot 98.4 4.1E-08 1.4E-12 93.9 0.4 49 464-521 2-50 (189)
160 2dy1_A Elongation factor G; tr 98.4 8.2E-08 2.8E-12 110.7 1.9 99 458-615 3-105 (665)
161 3kta_A Chromosome segregation 98.4 1E-07 3.6E-12 90.4 2.3 66 455-522 18-90 (182)
162 3thx_B DNA mismatch repair pro 98.3 2.1E-07 7.3E-12 110.8 5.0 52 435-486 639-695 (918)
163 3vaa_A Shikimate kinase, SK; s 98.3 1.6E-07 5.6E-12 91.0 3.3 39 450-488 11-49 (199)
164 2bbw_A Adenylate kinase 4, AK4 98.3 3.1E-08 1.1E-12 99.3 -2.4 39 463-501 26-67 (246)
165 2qt1_A Nicotinamide riboside k 98.3 1.1E-07 3.8E-12 92.3 1.0 30 460-489 17-46 (207)
166 1zu4_A FTSY; GTPase, signal re 98.3 1.5E-07 5E-12 99.5 1.0 53 453-505 94-146 (320)
167 2vp4_A Deoxynucleoside kinase; 98.2 1.2E-07 4.2E-12 94.4 -0.2 64 458-525 14-87 (230)
168 3ice_A Transcription terminati 98.2 1.8E-07 6.2E-12 101.6 0.9 54 434-488 131-198 (422)
169 3cr8_A Sulfate adenylyltranfer 98.2 9.7E-08 3.3E-12 108.0 -1.4 45 459-503 364-410 (552)
170 2cvh_A DNA repair and recombin 98.2 3.6E-07 1.2E-11 88.4 2.8 46 453-500 8-54 (220)
171 2r6f_A Excinuclease ABC subuni 98.1 7.2E-07 2.5E-11 106.2 3.6 52 626-677 501-590 (972)
172 3tif_A Uncharacterized ABC tra 98.1 3E-07 1E-11 92.8 0.2 47 525-571 34-80 (235)
173 2pcj_A ABC transporter, lipopr 98.1 3.5E-07 1.2E-11 91.5 0.0 45 525-569 33-77 (224)
174 2eyu_A Twitching motility prot 98.1 6.2E-07 2.1E-11 92.0 1.8 35 526-560 29-64 (261)
175 1g6h_A High-affinity branched- 98.1 4.1E-07 1.4E-11 92.9 0.2 36 525-560 36-71 (257)
176 1svm_A Large T antigen; AAA+ f 98.1 5.2E-07 1.8E-11 97.6 0.6 43 452-497 157-199 (377)
177 2onk_A Molybdate/tungstate ABC 98.1 5.1E-07 1.7E-11 91.6 0.5 36 524-559 26-61 (240)
178 3gfo_A Cobalt import ATP-bindi 98.1 4.6E-07 1.6E-11 93.9 0.2 36 525-560 37-72 (275)
179 4g1u_C Hemin import ATP-bindin 98.1 5E-07 1.7E-11 93.0 0.4 35 525-559 40-74 (266)
180 2ff7_A Alpha-hemolysin translo 98.1 4.9E-07 1.7E-11 91.9 0.3 35 525-559 38-72 (247)
181 1mv5_A LMRA, multidrug resista 98.1 6.1E-07 2.1E-11 90.8 0.8 35 525-559 31-65 (243)
182 1ji0_A ABC transporter; ATP bi 98.1 5.3E-07 1.8E-11 91.1 0.2 35 525-559 35-69 (240)
183 1b0u_A Histidine permease; ABC 98.1 5.3E-07 1.8E-11 92.5 0.1 37 525-561 35-71 (262)
184 2olj_A Amino acid ABC transpor 98.1 5.7E-07 1.9E-11 92.5 0.2 34 526-559 54-87 (263)
185 1ls1_A Signal recognition part 98.1 3.6E-07 1.2E-11 95.3 -1.3 62 437-504 77-138 (295)
186 2dhr_A FTSH; AAA+ protein, hex 98.1 2.6E-07 9E-12 103.3 -2.6 62 438-505 42-103 (499)
187 2ixe_A Antigen peptide transpo 98.0 6.8E-07 2.3E-11 92.2 0.3 35 525-559 48-82 (271)
188 1z6g_A Guanylate kinase; struc 98.0 4.4E-07 1.5E-11 89.9 -1.1 56 525-584 26-82 (218)
189 2ihy_A ABC transporter, ATP-bi 98.0 7.7E-07 2.6E-11 92.3 0.2 35 526-560 51-85 (279)
190 2kjq_A DNAA-related protein; s 98.0 1.4E-06 4.6E-11 81.9 1.9 46 453-504 30-77 (149)
191 3nh6_A ATP-binding cassette SU 98.0 5.6E-07 1.9E-11 94.7 -0.9 36 525-560 83-118 (306)
192 1vpl_A ABC transporter, ATP-bi 98.0 9.3E-07 3.2E-11 90.5 0.2 34 526-559 45-78 (256)
193 1rz3_A Hypothetical protein rb 98.0 1.1E-06 3.7E-11 85.6 0.5 45 461-505 19-63 (201)
194 1qhl_A Protein (cell division 98.0 8.9E-07 3.1E-11 89.4 -0.5 55 524-578 29-91 (227)
195 3rlf_A Maltose/maltodextrin im 98.0 1.2E-06 4.2E-11 94.9 0.5 37 524-560 31-67 (381)
196 2yz2_A Putative ABC transporte 98.0 1.2E-06 4E-11 90.0 0.2 35 525-559 36-70 (266)
197 3fvq_A Fe(3+) IONS import ATP- 98.0 1.2E-06 4.1E-11 94.2 0.3 37 524-560 32-68 (359)
198 2d2e_A SUFC protein; ABC-ATPas 98.0 1.2E-06 4.1E-11 89.1 0.2 35 525-559 32-68 (250)
199 3tui_C Methionine import ATP-b 97.9 1.3E-06 4.5E-11 94.1 0.5 47 525-571 57-103 (366)
200 1knq_A Gluconate kinase; ALFA/ 97.9 2.5E-06 8.4E-11 80.3 1.8 55 462-522 6-61 (175)
201 1oix_A RAS-related protein RAB 97.9 5.6E-06 1.9E-10 79.3 4.2 38 466-503 31-79 (191)
202 1z47_A CYSA, putative ABC-tran 97.9 1.7E-06 5.8E-11 92.9 0.5 36 525-560 44-79 (355)
203 1g29_1 MALK, maltose transport 97.9 1.5E-06 5.3E-11 93.7 0.1 38 525-562 32-69 (372)
204 1sgw_A Putative ABC transporte 97.9 1.6E-06 5.4E-11 86.6 0.2 33 525-557 38-70 (214)
205 2yyz_A Sugar ABC transporter, 97.9 1.7E-06 5.9E-11 93.0 0.5 36 525-560 32-67 (359)
206 1htw_A HI0065; nucleotide-bind 97.9 3.3E-06 1.1E-10 80.4 2.4 62 525-592 36-97 (158)
207 2zu0_C Probable ATP-dependent 97.9 1.7E-06 5.9E-11 88.9 0.4 34 526-559 50-85 (267)
208 2it1_A 362AA long hypothetical 97.9 1.9E-06 6.6E-11 92.7 0.5 36 525-560 32-67 (362)
209 2qi9_C Vitamin B12 import ATP- 97.9 2E-06 6.8E-11 87.8 0.3 33 526-559 30-62 (249)
210 1v43_A Sugar-binding transport 97.9 2.1E-06 7.1E-11 92.7 0.5 36 525-560 40-75 (372)
211 3d31_A Sulfate/molybdate ABC t 97.9 1.6E-06 5.5E-11 92.8 -0.7 35 525-559 29-63 (348)
212 2qtf_A Protein HFLX, GTP-bindi 97.9 2E-05 6.7E-10 84.7 7.6 39 464-502 178-228 (364)
213 1u0l_A Probable GTPase ENGC; p 97.8 1.5E-06 5E-11 90.6 -1.4 58 526-583 173-233 (301)
214 1f2t_B RAD50 ABC-ATPase; DNA d 97.8 1.5E-05 5E-10 75.3 5.5 26 626-651 54-85 (148)
215 1oxx_K GLCV, glucose, ABC tran 97.8 1.6E-06 5.4E-11 93.0 -1.4 38 525-562 34-71 (353)
216 1f6b_A SAR1; gtpases, N-termin 97.8 5.3E-06 1.8E-10 79.9 2.2 59 443-503 6-72 (198)
217 1sxj_E Activator 1 40 kDa subu 97.8 5.2E-06 1.8E-10 86.5 2.3 59 464-524 36-95 (354)
218 3tqc_A Pantothenate kinase; bi 97.8 2.2E-06 7.4E-11 90.9 -0.6 55 442-498 66-128 (321)
219 2f9l_A RAB11B, member RAS onco 97.8 9.3E-06 3.2E-10 77.8 3.5 37 466-502 7-54 (199)
220 1mky_A Probable GTP-binding pr 97.8 1.1E-05 3.7E-10 88.1 4.5 58 526-583 184-253 (439)
221 2ghi_A Transport protein; mult 97.8 3.5E-06 1.2E-10 86.3 0.3 34 525-559 49-82 (260)
222 2ygr_A Uvrabc system protein A 97.8 1.5E-05 5.1E-10 95.3 5.6 40 435-481 24-63 (993)
223 3ec2_A DNA replication protein 97.8 2.6E-06 8.7E-11 80.9 -0.7 36 458-493 32-67 (180)
224 1ni3_A YCHF GTPase, YCHF GTP-b 97.8 1.2E-05 3.9E-10 87.5 4.0 43 460-502 16-70 (392)
225 3sop_A Neuronal-specific septi 97.8 5.8E-06 2E-10 85.2 1.4 34 526-559 6-39 (270)
226 2pjz_A Hypothetical protein ST 97.7 4.2E-06 1.4E-10 86.1 0.3 34 525-559 33-66 (263)
227 3k1j_A LON protease, ATP-depen 97.7 6.6E-06 2.2E-10 93.6 1.3 66 451-521 47-113 (604)
228 2pez_A Bifunctional 3'-phospho 97.7 5.8E-06 2E-10 78.3 0.4 42 462-504 3-46 (179)
229 3r20_A Cytidylate kinase; stru 97.7 8.7E-06 3E-10 82.5 1.5 25 464-488 9-33 (233)
230 2p67_A LAO/AO transport system 97.7 4.8E-06 1.6E-10 88.2 -0.4 52 452-503 44-95 (341)
231 1wb9_A DNA mismatch repair pro 97.7 1.6E-05 5.6E-10 93.5 4.0 50 435-487 576-630 (800)
232 3euj_A Chromosome partition pr 97.6 1.4E-05 4.7E-10 89.1 2.0 41 524-564 31-71 (483)
233 1m2o_B GTP-binding protein SAR 97.6 3.8E-05 1.3E-09 73.2 4.4 50 453-503 13-70 (190)
234 1m7g_A Adenylylsulfate kinase; 97.6 7.4E-06 2.5E-10 80.0 -0.6 45 459-503 20-66 (211)
235 2qor_A Guanylate kinase; phosp 97.6 1.4E-05 4.6E-10 77.8 1.1 29 461-489 9-37 (204)
236 3gd7_A Fusion complex of cysti 97.6 1.2E-05 3.9E-10 87.5 0.5 35 525-560 50-84 (390)
237 2cbz_A Multidrug resistance-as 97.6 9.9E-06 3.4E-10 81.7 -0.1 28 525-552 34-61 (237)
238 1kag_A SKI, shikimate kinase I 97.6 2.7E-05 9.1E-10 72.8 2.7 33 463-499 3-35 (173)
239 2pze_A Cystic fibrosis transme 97.6 1.1E-05 3.9E-10 80.8 0.1 28 525-552 37-64 (229)
240 2gj8_A MNME, tRNA modification 97.5 5.3E-05 1.8E-09 71.2 4.6 41 462-502 2-54 (172)
241 3b85_A Phosphate starvation-in 97.5 2.5E-05 8.4E-10 77.5 2.4 124 526-675 26-171 (208)
242 3hr8_A Protein RECA; alpha and 97.5 1.1E-05 3.6E-10 86.8 -0.4 42 460-501 57-99 (356)
243 3m6a_A ATP-dependent protease 97.5 1.5E-05 5E-10 89.8 0.7 79 439-520 86-164 (543)
244 1mky_A Probable GTP-binding pr 97.5 4.1E-05 1.4E-09 83.6 4.2 58 465-522 181-250 (439)
245 2www_A Methylmalonic aciduria 97.5 1.7E-05 5.9E-10 84.4 1.2 43 462-504 72-114 (349)
246 3kta_A Chromosome segregation 97.5 1.9E-05 6.5E-10 74.7 1.1 88 524-611 28-136 (182)
247 3t34_A Dynamin-related protein 97.5 1.7E-05 5.7E-10 84.2 0.4 45 452-499 25-71 (360)
248 4eaq_A DTMP kinase, thymidylat 97.5 4.2E-05 1.4E-09 76.6 2.7 36 463-499 25-60 (229)
249 2px0_A Flagellar biosynthesis 97.4 2.6E-05 8.8E-10 81.4 1.0 43 462-504 103-146 (296)
250 1tq4_A IIGP1, interferon-induc 97.4 2.9E-05 1E-09 84.9 1.5 34 524-557 71-104 (413)
251 2ffh_A Protein (FFH); SRP54, s 97.4 1.8E-05 6.2E-10 86.9 -0.7 63 437-505 77-139 (425)
252 2bbs_A Cystic fibrosis transme 97.4 2.4E-05 8.2E-10 81.6 -0.2 28 525-552 67-94 (290)
253 2i3b_A HCR-ntpase, human cance 97.4 5E-05 1.7E-09 74.2 1.7 99 526-651 5-109 (189)
254 2jaq_A Deoxyguanosine kinase; 97.3 2.6E-05 8.9E-10 74.3 -0.8 23 466-488 2-24 (205)
255 2f1r_A Molybdopterin-guanine d 97.3 3E-05 1E-09 74.7 -0.5 38 526-563 6-46 (171)
256 2pt7_A CAG-ALFA; ATPase, prote 97.3 4.9E-05 1.7E-09 80.4 0.6 94 526-675 175-291 (330)
257 2dr3_A UPF0273 protein PH0284; 97.3 3.9E-05 1.3E-09 75.2 -0.3 67 453-520 11-79 (247)
258 2nq2_C Hypothetical ABC transp 97.3 4.6E-05 1.6E-09 77.7 0.3 28 525-552 34-61 (253)
259 2qag_A Septin-2, protein NEDD5 97.2 3.9E-05 1.3E-09 82.0 -0.5 56 433-496 14-69 (361)
260 3kta_B Chromosome segregation 97.2 0.00018 6.3E-09 69.5 4.2 26 626-651 61-90 (173)
261 2yvu_A Probable adenylyl-sulfa 97.2 5E-05 1.7E-09 72.3 -0.3 42 461-502 10-52 (186)
262 1sxj_C Activator 1 40 kDa subu 97.2 2.3E-05 7.9E-10 82.0 -2.9 69 451-519 31-102 (340)
263 3a00_A Guanylate kinase, GMP k 97.2 0.00011 3.9E-09 70.2 2.2 56 526-584 5-60 (186)
264 2wji_A Ferrous iron transport 97.2 0.00032 1.1E-08 65.0 5.2 24 465-488 4-27 (165)
265 3b9q_A Chloroplast SRP recepto 97.2 9.9E-05 3.4E-09 77.2 1.8 45 526-570 104-149 (302)
266 1j8m_F SRP54, signal recogniti 97.2 5.5E-05 1.9E-09 79.0 -0.1 61 439-504 77-138 (297)
267 1lvg_A Guanylate kinase, GMP k 97.2 0.00012 4E-09 71.3 2.2 22 526-547 8-29 (198)
268 2obl_A ESCN; ATPase, hydrolase 97.2 9.2E-05 3.1E-09 79.0 1.5 135 526-677 75-245 (347)
269 4eun_A Thermoresistant glucoki 97.2 9.8E-05 3.3E-09 71.4 1.6 55 523-582 30-84 (200)
270 1y63_A LMAJ004144AAA protein; 97.2 0.00016 5.6E-09 69.0 3.0 32 456-487 2-33 (184)
271 2wjg_A FEOB, ferrous iron tran 97.2 0.00024 8.1E-09 66.5 4.0 38 465-502 8-56 (188)
272 2gza_A Type IV secretion syste 97.1 8.6E-05 2.9E-09 79.4 0.9 32 526-557 179-210 (361)
273 1rj9_A FTSY, signal recognitio 97.1 0.00017 5.8E-09 75.6 3.0 39 525-563 105-143 (304)
274 2p5t_B PEZT; postsegregational 97.1 0.00013 4.5E-09 73.5 1.5 43 460-504 28-70 (253)
275 3e70_C DPA, signal recognition 97.0 0.00018 6E-09 76.3 2.2 66 526-591 133-205 (328)
276 1jjv_A Dephospho-COA kinase; P 97.0 0.00024 8.1E-09 68.6 2.6 29 466-499 4-32 (206)
277 3szr_A Interferon-induced GTP- 97.0 0.00013 4.6E-09 83.2 1.0 67 525-591 48-119 (608)
278 2ohf_A Protein OLA1, GTP-bindi 97.0 0.0003 1E-08 76.6 3.5 42 460-501 18-70 (396)
279 2dpy_A FLII, flagellum-specifi 97.0 0.00015 5.2E-09 79.7 1.0 35 526-560 161-195 (438)
280 1f2t_A RAD50 ABC-ATPase; DNA d 97.0 0.00039 1.3E-08 65.1 3.6 27 458-485 18-44 (149)
281 1lv7_A FTSH; alpha/beta domain 97.0 0.00043 1.5E-08 69.1 4.1 48 453-504 36-83 (257)
282 3t61_A Gluconokinase; PSI-biol 97.0 0.00016 5.6E-09 69.6 1.0 35 464-502 18-52 (202)
283 1sxj_E Activator 1 40 kDa subu 97.0 0.00019 6.4E-09 74.7 1.4 53 527-581 41-94 (354)
284 2npi_A Protein CLP1; CLP1-PCF1 96.9 0.00016 5.6E-09 80.0 0.9 50 525-583 141-192 (460)
285 2og2_A Putative signal recogni 96.9 0.00023 7.9E-09 76.4 1.8 44 526-569 161-205 (359)
286 1nij_A Hypothetical protein YJ 96.9 0.00022 7.6E-09 74.7 1.5 37 526-562 8-52 (318)
287 2zej_A Dardarin, leucine-rich 96.9 0.00046 1.6E-08 65.1 3.4 27 466-492 4-30 (184)
288 1zp6_A Hypothetical protein AT 96.9 0.00021 7.3E-09 67.7 0.9 113 526-651 13-131 (191)
289 1p9r_A General secretion pathw 96.9 0.00028 9.7E-09 77.2 1.9 113 526-651 171-313 (418)
290 2ius_A DNA translocase FTSK; n 96.8 0.00039 1.3E-08 78.1 2.8 50 456-505 159-210 (512)
291 2vp4_A Deoxynucleoside kinase; 96.8 0.00015 5.1E-09 72.0 -0.6 57 523-583 21-87 (230)
292 2ehv_A Hypothetical protein PH 96.8 0.00044 1.5E-08 67.8 2.5 64 526-590 34-100 (251)
293 1lw7_A Transcriptional regulat 96.8 0.00018 6.3E-09 76.4 -0.3 31 526-556 174-208 (365)
294 3ihw_A Centg3; RAS, centaurin, 96.7 0.0012 4.1E-08 62.6 5.0 37 466-502 22-67 (184)
295 2qm8_A GTPase/ATPase; G protei 96.7 0.00039 1.3E-08 73.7 1.8 61 523-583 56-120 (337)
296 1np6_A Molybdopterin-guanine d 96.7 0.00048 1.7E-08 66.5 2.3 38 464-501 6-46 (174)
297 1ypw_A Transitional endoplasmi 96.7 0.00021 7.3E-09 84.1 -0.4 62 458-521 232-293 (806)
298 4ag6_A VIRB4 ATPase, type IV s 96.7 0.00054 1.8E-08 73.2 2.5 36 463-498 34-69 (392)
299 1ye8_A Protein THEP1, hypothet 96.7 0.00045 1.6E-08 66.5 1.7 93 526-651 4-103 (178)
300 4a74_A DNA repair and recombin 96.7 0.00039 1.3E-08 67.3 1.2 65 526-596 29-100 (231)
301 1uf9_A TT1252 protein; P-loop, 96.7 0.00066 2.3E-08 64.6 2.8 33 464-501 8-40 (203)
302 2if2_A Dephospho-COA kinase; a 96.7 0.00063 2.2E-08 65.3 2.7 21 466-486 3-23 (204)
303 2yhs_A FTSY, cell division pro 96.7 0.00049 1.7E-08 77.0 1.9 66 526-591 297-369 (503)
304 3cm0_A Adenylate kinase; ATP-b 96.7 0.00074 2.5E-08 63.6 2.8 26 462-487 2-27 (186)
305 2oap_1 GSPE-2, type II secreti 96.6 0.00041 1.4E-08 77.7 1.0 113 526-642 264-413 (511)
306 2yv5_A YJEQ protein; hydrolase 96.6 0.00045 1.5E-08 72.0 1.2 105 526-642 169-300 (302)
307 3lnc_A Guanylate kinase, GMP k 96.6 0.00056 1.9E-08 67.4 1.8 61 525-590 30-103 (231)
308 1qhx_A CPT, protein (chloramph 96.6 0.00096 3.3E-08 62.4 3.3 26 464-489 3-28 (178)
309 3uie_A Adenylyl-sulfate kinase 96.6 0.00038 1.3E-08 67.3 0.4 35 526-561 29-65 (200)
310 1sq5_A Pantothenate kinase; P- 96.6 0.00059 2E-08 71.0 1.8 64 523-591 81-150 (308)
311 1fzq_A ADP-ribosylation factor 96.6 0.0011 3.8E-08 62.4 3.3 39 464-502 16-62 (181)
312 1oix_A RAS-related protein RAB 96.6 0.00016 5.6E-09 69.0 -2.5 37 525-561 32-79 (191)
313 2ewv_A Twitching motility prot 96.6 0.00056 1.9E-08 73.5 1.4 33 525-557 139-172 (372)
314 3kb2_A SPBC2 prophage-derived 96.5 0.0011 3.7E-08 61.2 2.9 23 466-488 3-25 (173)
315 1gtv_A TMK, thymidylate kinase 96.5 0.0003 1E-08 67.8 -1.0 30 466-495 2-31 (214)
316 1s96_A Guanylate kinase, GMP k 96.5 0.00065 2.2E-08 67.7 1.4 78 526-607 20-107 (219)
317 3lxx_A GTPase IMAP family memb 96.5 0.0015 5.1E-08 64.6 3.9 28 466-493 31-58 (239)
318 2ga8_A Hypothetical 39.9 kDa p 96.5 0.00046 1.6E-08 74.2 0.1 37 452-488 10-48 (359)
319 3trf_A Shikimate kinase, SK; a 96.5 0.0013 4.3E-08 62.1 3.1 26 463-488 4-29 (185)
320 1ega_A Protein (GTP-binding pr 96.5 0.00085 2.9E-08 69.7 2.0 25 463-487 7-31 (301)
321 1kht_A Adenylate kinase; phosp 96.4 0.0015 5.3E-08 61.2 3.5 26 463-488 2-27 (192)
322 2v54_A DTMP kinase, thymidylat 96.4 0.0018 6E-08 61.8 3.5 27 462-488 2-28 (204)
323 1q3t_A Cytidylate kinase; nucl 96.3 0.0016 5.6E-08 64.5 3.2 27 461-487 13-39 (236)
324 3lw7_A Adenylate kinase relate 96.3 0.0017 5.9E-08 59.3 3.1 19 466-484 3-21 (179)
325 4aby_A DNA repair protein RECN 96.3 0.00042 1.4E-08 74.1 -1.2 28 524-551 62-89 (415)
326 1znw_A Guanylate kinase, GMP k 96.3 0.001 3.6E-08 64.6 1.7 62 526-591 24-86 (207)
327 3qks_A DNA double-strand break 96.3 0.002 6.8E-08 63.1 3.6 27 458-485 18-44 (203)
328 2bdt_A BH3686; alpha-beta prot 96.3 0.00087 3E-08 63.7 0.9 57 526-591 6-63 (189)
329 2lkc_A Translation initiation 96.3 0.0048 1.6E-07 56.7 5.9 25 462-486 6-30 (178)
330 2j41_A Guanylate kinase; GMP, 96.3 0.00052 1.8E-08 65.5 -0.7 26 526-551 10-35 (207)
331 1jal_A YCHF protein; nucleotid 96.3 0.0026 8.9E-08 68.5 4.6 37 464-500 2-49 (363)
332 1vht_A Dephospho-COA kinase; s 96.3 0.0022 7.6E-08 62.3 3.6 24 463-486 3-26 (218)
333 2rhm_A Putative kinase; P-loop 96.2 0.0018 6E-08 61.1 2.7 27 462-488 3-29 (193)
334 4e22_A Cytidylate kinase; P-lo 96.2 0.0006 2.1E-08 68.8 -0.6 29 526-554 31-62 (252)
335 3iij_A Coilin-interacting nucl 96.2 0.0015 5.3E-08 61.4 2.0 27 462-488 9-35 (180)
336 3cbq_A GTP-binding protein REM 96.2 0.0026 8.8E-08 60.9 3.5 22 466-487 25-46 (195)
337 2fn4_A P23, RAS-related protei 96.2 0.0043 1.5E-07 56.9 4.8 22 466-487 11-32 (181)
338 2c95_A Adenylate kinase 1; tra 96.2 0.0021 7.2E-08 60.7 2.8 27 462-488 7-33 (196)
339 1gvn_B Zeta; postsegregational 96.2 0.0025 8.5E-08 65.9 3.5 38 463-502 32-69 (287)
340 2f9l_A RAB11B, member RAS onco 96.1 0.00099 3.4E-08 63.6 0.3 35 526-560 9-54 (199)
341 2dyk_A GTP-binding protein; GT 96.1 0.0044 1.5E-07 55.8 4.6 23 466-488 3-25 (161)
342 1rz3_A Hypothetical protein rb 96.1 0.0026 8.8E-08 61.6 3.2 43 523-565 23-65 (201)
343 2bbw_A Adenylate kinase 4, AK4 96.1 0.00064 2.2E-08 67.8 -1.1 63 525-591 30-96 (246)
344 2wwf_A Thymidilate kinase, put 96.1 0.0026 9E-08 60.9 3.3 27 462-488 8-34 (212)
345 2erx_A GTP-binding protein DI- 96.1 0.004 1.4E-07 56.5 4.2 21 466-486 5-25 (172)
346 1nn5_A Similar to deoxythymidy 96.1 0.0028 9.5E-08 60.8 3.2 28 461-488 6-33 (215)
347 2plr_A DTMP kinase, probable t 96.1 0.0029 9.9E-08 60.3 3.3 28 463-490 3-30 (213)
348 3tr0_A Guanylate kinase, GMP k 96.1 0.0016 5.4E-08 62.2 1.4 62 525-590 10-72 (205)
349 1ko7_A HPR kinase/phosphatase; 96.0 0.0042 1.4E-07 65.7 4.2 34 452-486 133-166 (314)
350 1via_A Shikimate kinase; struc 96.0 0.0028 9.4E-08 59.5 2.5 23 466-488 6-28 (175)
351 2z43_A DNA repair and recombin 96.0 0.0059 2E-07 63.8 5.3 41 460-500 103-150 (324)
352 2bwj_A Adenylate kinase 5; pho 95.9 0.0025 8.7E-08 60.3 2.1 28 461-488 9-36 (199)
353 2oil_A CATX-8, RAS-related pro 95.9 0.0066 2.3E-07 57.0 5.0 21 466-486 27-47 (193)
354 1z2a_A RAS-related protein RAB 95.9 0.0034 1.2E-07 56.9 2.9 22 466-487 7-28 (168)
355 1ly1_A Polynucleotide kinase; 95.9 0.0034 1.2E-07 58.3 2.9 31 465-498 3-33 (181)
356 1ex7_A Guanylate kinase; subst 95.9 0.0033 1.1E-07 61.4 2.9 22 467-488 4-25 (186)
357 3q72_A GTP-binding protein RAD 95.9 0.0034 1.2E-07 57.1 2.8 23 466-488 4-26 (166)
358 3kl4_A SRP54, signal recogniti 95.9 0.0018 6.2E-08 71.2 1.2 42 463-504 96-137 (433)
359 1tev_A UMP-CMP kinase; ploop, 95.9 0.0038 1.3E-07 58.6 3.2 26 463-488 2-27 (196)
360 3c8u_A Fructokinase; YP_612366 95.9 0.0026 9E-08 61.7 2.1 107 523-651 23-134 (208)
361 1kao_A RAP2A; GTP-binding prot 95.9 0.0037 1.3E-07 56.3 2.9 21 466-486 5-25 (167)
362 2ze6_A Isopentenyl transferase 95.9 0.0033 1.1E-07 63.6 2.8 23 466-488 3-25 (253)
363 2nzj_A GTP-binding protein REM 95.9 0.0043 1.5E-07 56.7 3.2 23 466-488 6-28 (175)
364 2ce2_X GTPase HRAS; signaling 95.8 0.0037 1.3E-07 56.1 2.6 22 466-487 5-26 (166)
365 2qnr_A Septin-2, protein NEDD5 95.8 0.0018 6.3E-08 67.3 0.7 104 526-644 22-128 (301)
366 1ksh_A ARF-like protein 2; sma 95.8 0.009 3.1E-07 55.6 5.3 26 462-487 16-41 (186)
367 1t9h_A YLOQ, probable GTPase E 95.8 0.00085 2.9E-08 70.6 -2.0 87 525-613 176-288 (307)
368 3auy_A DNA double-strand break 95.8 0.0063 2.1E-07 64.8 4.7 30 455-485 17-46 (371)
369 1u8z_A RAS-related protein RAL 95.8 0.0041 1.4E-07 56.1 2.9 22 466-487 6-27 (168)
370 3q85_A GTP-binding protein REM 95.8 0.0045 1.6E-07 56.4 3.2 22 466-487 4-25 (169)
371 2vli_A Antibiotic resistance p 95.8 0.0037 1.3E-07 58.5 2.6 27 462-488 3-29 (183)
372 1nks_A Adenylate kinase; therm 95.8 0.0043 1.5E-07 58.1 3.0 24 466-489 3-26 (194)
373 2kjq_A DNAA-related protein; s 95.8 0.0034 1.1E-07 58.6 2.2 36 527-563 41-78 (149)
374 2ged_A SR-beta, signal recogni 95.8 0.0043 1.5E-07 58.2 2.9 25 464-488 48-72 (193)
375 1knq_A Gluconate kinase; ALFA/ 95.8 0.004 1.4E-07 58.2 2.7 48 526-579 12-60 (175)
376 3lxw_A GTPase IMAP family memb 95.7 0.0045 1.5E-07 62.2 3.2 23 466-488 23-45 (247)
377 1c1y_A RAS-related protein RAP 95.7 0.0044 1.5E-07 56.0 2.9 21 466-486 5-25 (167)
378 2ew1_A RAS-related protein RAB 95.7 0.0079 2.7E-07 58.0 4.8 21 466-486 28-48 (201)
379 1z0j_A RAB-22, RAS-related pro 95.7 0.0045 1.5E-07 56.2 2.9 23 466-488 8-30 (170)
380 3tw8_B RAS-related protein RAB 95.7 0.0049 1.7E-07 56.5 3.2 22 466-487 11-32 (181)
381 1g16_A RAS-related protein SEC 95.7 0.0042 1.4E-07 56.4 2.6 22 466-487 5-26 (170)
382 3jvv_A Twitching mobility prot 95.7 0.0026 9E-08 68.0 1.5 51 526-580 127-178 (356)
383 1z08_A RAS-related protein RAB 95.7 0.0047 1.6E-07 56.2 3.0 22 466-487 8-29 (170)
384 1ek0_A Protein (GTP-binding pr 95.7 0.0046 1.6E-07 56.0 2.9 22 466-487 5-26 (170)
385 3cf0_A Transitional endoplasmi 95.7 0.0027 9.1E-08 65.5 1.4 42 459-502 44-85 (301)
386 1ky3_A GTP-binding protein YPT 95.7 0.0047 1.6E-07 56.7 2.9 22 466-487 10-31 (182)
387 1aky_A Adenylate kinase; ATP:A 95.7 0.0055 1.9E-07 59.7 3.5 27 462-488 2-28 (220)
388 3iby_A Ferrous iron transport 95.7 0.0057 2E-07 62.0 3.7 37 466-502 3-50 (256)
389 2bcg_Y Protein YP2, GTP-bindin 95.7 0.009 3.1E-07 56.8 4.8 21 466-486 10-30 (206)
390 2rcn_A Probable GTPase ENGC; Y 95.7 0.0023 8E-08 68.7 0.8 111 525-649 218-333 (358)
391 1xjc_A MOBB protein homolog; s 95.7 0.0032 1.1E-07 60.8 1.7 35 465-499 5-42 (169)
392 1wms_A RAB-9, RAB9, RAS-relate 95.7 0.005 1.7E-07 56.5 2.9 22 466-487 9-30 (177)
393 3clv_A RAB5 protein, putative; 95.6 0.0051 1.8E-07 57.1 2.9 22 466-487 9-30 (208)
394 3t5d_A Septin-7; GTP-binding p 95.6 0.0048 1.6E-07 62.6 2.9 22 466-487 10-31 (274)
395 1r2q_A RAS-related protein RAB 95.6 0.0052 1.8E-07 55.6 2.9 21 466-486 8-28 (170)
396 3pqc_A Probable GTP-binding pr 95.6 0.0049 1.7E-07 57.4 2.7 23 466-488 25-47 (195)
397 1svi_A GTP-binding protein YSX 95.6 0.0049 1.7E-07 57.8 2.7 24 464-487 23-46 (195)
398 1v5w_A DMC1, meiotic recombina 95.6 0.0075 2.6E-07 63.7 4.4 28 460-487 118-145 (343)
399 3fb4_A Adenylate kinase; psych 95.6 0.0054 1.8E-07 59.3 3.1 23 466-488 2-24 (216)
400 3k53_A Ferrous iron transport 95.6 0.005 1.7E-07 62.3 2.9 24 466-489 5-28 (271)
401 3ake_A Cytidylate kinase; CMP 95.6 0.0052 1.8E-07 58.6 2.9 23 466-488 4-26 (208)
402 4a1f_A DNAB helicase, replicat 95.6 0.011 3.7E-07 63.0 5.5 44 453-496 35-78 (338)
403 3tqc_A Pantothenate kinase; bi 95.6 0.0054 1.8E-07 64.9 3.2 38 523-560 93-135 (321)
404 4dsu_A GTPase KRAS, isoform 2B 95.6 0.0056 1.9E-07 56.7 2.9 22 466-487 6-27 (189)
405 3ney_A 55 kDa erythrocyte memb 95.6 0.0047 1.6E-07 61.0 2.4 22 526-547 23-44 (197)
406 1zd8_A GTP:AMP phosphotransfer 95.6 0.0059 2E-07 59.8 3.2 27 462-488 5-31 (227)
407 3t1o_A Gliding protein MGLA; G 95.5 0.0059 2E-07 56.8 3.0 25 466-490 16-40 (198)
408 2z0h_A DTMP kinase, thymidylat 95.5 0.0061 2.1E-07 57.6 3.1 23 466-488 2-24 (197)
409 2dby_A GTP-binding protein; GD 95.5 0.0047 1.6E-07 66.4 2.6 22 466-487 3-24 (368)
410 2cjw_A GTP-binding protein GEM 95.5 0.0064 2.2E-07 57.9 3.2 21 466-486 8-28 (192)
411 2iyv_A Shikimate kinase, SK; t 95.5 0.0052 1.8E-07 57.9 2.5 25 464-488 2-26 (184)
412 1e69_A Chromosome segregation 95.5 0.0055 1.9E-07 63.9 2.9 23 524-546 26-48 (322)
413 3bc1_A RAS-related protein RAB 95.5 0.0059 2E-07 56.5 2.9 21 466-486 13-33 (195)
414 2cdn_A Adenylate kinase; phosp 95.5 0.0072 2.5E-07 57.9 3.5 25 464-488 20-44 (201)
415 2cxx_A Probable GTP-binding pr 95.5 0.0058 2E-07 56.8 2.8 22 466-487 3-24 (190)
416 1kgd_A CASK, peripheral plasma 95.5 0.0028 9.5E-08 60.3 0.6 29 526-554 9-38 (180)
417 2w0m_A SSO2452; RECA, SSPF, un 95.5 0.0047 1.6E-07 59.4 2.2 54 526-579 27-80 (235)
418 2pt5_A Shikimate kinase, SK; a 95.5 0.0069 2.4E-07 55.9 3.2 23 466-488 2-24 (168)
419 1zuh_A Shikimate kinase; alpha 95.5 0.007 2.4E-07 56.2 3.3 24 464-487 7-30 (168)
420 1e6c_A Shikimate kinase; phosp 95.5 0.0062 2.1E-07 56.4 2.8 24 465-488 3-26 (173)
421 1r8s_A ADP-ribosylation factor 95.5 0.0065 2.2E-07 55.0 2.9 21 466-486 2-22 (164)
422 2hxs_A RAB-26, RAS-related pro 95.5 0.0072 2.5E-07 55.5 3.2 22 466-487 8-29 (178)
423 3dl0_A Adenylate kinase; phosp 95.5 0.0066 2.3E-07 58.7 3.1 23 466-488 2-24 (216)
424 2y8e_A RAB-protein 6, GH09086P 95.4 0.0061 2.1E-07 55.7 2.6 21 466-486 16-36 (179)
425 1upt_A ARL1, ADP-ribosylation 95.4 0.0067 2.3E-07 55.2 2.9 23 464-486 7-29 (171)
426 2pbr_A DTMP kinase, thymidylat 95.4 0.0072 2.5E-07 56.7 3.1 23 466-488 2-24 (195)
427 3llm_A ATP-dependent RNA helic 95.4 0.005 1.7E-07 60.9 2.1 25 461-485 73-97 (235)
428 1ukz_A Uridylate kinase; trans 95.4 0.0069 2.4E-07 57.9 3.0 25 464-488 15-39 (203)
429 1ni3_A YCHF GTPase, YCHF GTP-b 95.4 0.0029 1E-07 68.7 0.4 38 524-561 22-71 (392)
430 1a7j_A Phosphoribulokinase; tr 95.4 0.0048 1.7E-07 63.9 2.0 26 463-488 4-29 (290)
431 1zak_A Adenylate kinase; ATP:A 95.4 0.0064 2.2E-07 59.3 2.7 26 463-488 4-29 (222)
432 3auy_A DNA double-strand break 95.4 0.007 2.4E-07 64.4 3.3 24 628-651 279-309 (371)
433 2g6b_A RAS-related protein RAB 95.4 0.007 2.4E-07 55.7 2.9 21 466-486 12-32 (180)
434 1qf9_A UMP/CMP kinase, protein 95.4 0.0071 2.4E-07 56.6 2.9 25 464-488 6-30 (194)
435 1m7b_A RND3/RHOE small GTP-bin 95.4 0.009 3.1E-07 55.9 3.6 22 466-487 9-30 (184)
436 3t5g_A GTP-binding protein RHE 95.4 0.01 3.6E-07 54.8 4.0 20 466-485 8-27 (181)
437 1z0f_A RAB14, member RAS oncog 95.4 0.0073 2.5E-07 55.2 2.9 22 466-487 17-38 (179)
438 2efe_B Small GTP-binding prote 95.3 0.0076 2.6E-07 55.5 3.0 22 466-487 14-35 (181)
439 1moz_A ARL1, ADP-ribosylation 95.3 0.0057 1.9E-07 56.6 2.1 24 463-486 17-40 (183)
440 2a9k_A RAS-related protein RAL 95.3 0.0075 2.6E-07 55.6 2.9 21 466-486 20-40 (187)
441 3kkq_A RAS-related protein M-R 95.3 0.014 4.9E-07 54.0 4.8 21 466-486 20-40 (183)
442 3con_A GTPase NRAS; structural 95.3 0.0079 2.7E-07 56.2 2.9 22 466-487 23-44 (190)
443 2zr9_A Protein RECA, recombina 95.3 0.0059 2E-07 65.0 2.2 40 460-499 57-97 (349)
444 2xtp_A GTPase IMAP family memb 95.3 0.0081 2.8E-07 59.9 3.1 23 465-487 23-45 (260)
445 1cke_A CK, MSSA, protein (cyti 95.2 0.0033 1.1E-07 61.1 0.0 30 526-555 9-41 (227)
446 4ad8_A DNA repair protein RECN 95.2 0.0041 1.4E-07 69.2 0.8 59 524-582 62-159 (517)
447 4bas_A ADP-ribosylation factor 95.2 0.013 4.3E-07 55.0 4.0 29 465-493 18-52 (199)
448 2bme_A RAB4A, RAS-related prot 95.2 0.0082 2.8E-07 55.7 2.6 22 466-487 12-33 (186)
449 1vg8_A RAS-related protein RAB 95.2 0.0089 3E-07 56.5 2.9 22 466-487 10-31 (207)
450 2bov_A RAla, RAS-related prote 95.2 0.0088 3E-07 56.4 2.9 21 466-486 16-36 (206)
451 2r6a_A DNAB helicase, replicat 95.2 0.0032 1.1E-07 69.0 -0.3 48 452-499 191-239 (454)
452 2px0_A Flagellar biosynthesis 95.2 0.007 2.4E-07 63.0 2.3 35 526-560 109-144 (296)
453 2gf0_A GTP-binding protein DI- 95.1 0.0086 2.9E-07 56.1 2.7 22 465-486 9-30 (199)
454 2gf9_A RAS-related protein RAB 95.1 0.0092 3.1E-07 55.9 2.9 22 466-487 24-45 (189)
455 1wb9_A DNA mismatch repair pro 95.1 0.0046 1.6E-07 72.8 1.0 54 525-592 610-665 (800)
456 3aez_A Pantothenate kinase; tr 95.1 0.0062 2.1E-07 63.9 1.8 27 522-548 90-116 (312)
457 4fcw_A Chaperone protein CLPB; 95.1 0.0069 2.4E-07 61.5 2.1 39 464-502 47-86 (311)
458 2fv8_A H6, RHO-related GTP-bin 95.1 0.0045 1.5E-07 59.3 0.7 24 464-487 25-48 (207)
459 3tlx_A Adenylate kinase 2; str 95.1 0.0099 3.4E-07 59.5 3.2 26 463-488 28-53 (243)
460 1uj2_A Uridine-cytidine kinase 95.1 0.0097 3.3E-07 59.5 3.1 24 465-488 23-46 (252)
461 1mh1_A RAC1; GTP-binding, GTPa 95.1 0.0097 3.3E-07 54.9 2.9 21 466-486 7-27 (186)
462 2v9p_A Replication protein E1; 95.1 0.0064 2.2E-07 63.9 1.8 21 526-546 130-150 (305)
463 3tkl_A RAS-related protein RAB 95.1 0.0096 3.3E-07 55.6 2.9 22 466-487 18-39 (196)
464 2grj_A Dephospho-COA kinase; T 95.1 0.01 3.5E-07 57.9 3.1 24 464-487 12-35 (192)
465 3b1v_A Ferrous iron uptake tra 95.1 0.01 3.5E-07 60.9 3.2 24 465-488 4-27 (272)
466 2g3y_A GTP-binding protein GEM 95.1 0.015 5.1E-07 57.2 4.3 22 466-487 39-60 (211)
467 3a8t_A Adenylate isopentenyltr 95.1 0.011 3.9E-07 63.0 3.7 27 462-488 38-64 (339)
468 2fg5_A RAB-22B, RAS-related pr 95.1 0.0094 3.2E-07 56.3 2.7 21 466-486 25-45 (192)
469 1zbd_A Rabphilin-3A; G protein 95.1 0.011 3.8E-07 55.9 3.2 22 466-487 10-31 (203)
470 3asz_A Uridine kinase; cytidin 95.1 0.0065 2.2E-07 58.5 1.6 96 525-651 9-115 (211)
471 1z06_A RAS-related protein RAB 95.1 0.01 3.5E-07 55.6 2.9 21 466-486 22-42 (189)
472 2il1_A RAB12; G-protein, GDP, 95.0 0.011 3.7E-07 55.9 3.1 22 466-487 28-49 (192)
473 1nrj_B SR-beta, signal recogni 95.0 0.01 3.5E-07 57.0 2.9 24 465-488 13-36 (218)
474 4dhe_A Probable GTP-binding pr 95.0 0.0055 1.9E-07 59.0 0.9 25 464-488 29-53 (223)
475 2qu8_A Putative nucleolar GTP- 95.0 0.011 3.8E-07 57.6 3.2 23 465-487 30-52 (228)
476 3bwd_D RAC-like GTP-binding pr 95.0 0.012 4.3E-07 54.1 3.2 25 463-487 7-31 (182)
477 3oes_A GTPase rhebl1; small GT 95.0 0.01 3.4E-07 56.5 2.6 23 465-487 25-47 (201)
478 3ec2_A DNA replication protein 95.0 0.0077 2.6E-07 56.7 1.8 26 527-552 43-68 (180)
479 2h57_A ADP-ribosylation factor 95.0 0.01 3.5E-07 55.7 2.6 23 466-488 23-45 (190)
480 3a4m_A L-seryl-tRNA(SEC) kinas 94.9 0.012 4.2E-07 59.3 3.3 26 462-487 2-27 (260)
481 1wf3_A GTP-binding protein; GT 94.9 0.012 4E-07 61.2 3.2 22 466-487 9-30 (301)
482 1pui_A ENGB, probable GTP-bind 94.9 0.0028 9.7E-08 60.4 -1.4 30 526-555 30-64 (210)
483 3zvl_A Bifunctional polynucleo 94.9 0.021 7.2E-07 61.9 5.3 39 460-502 254-292 (416)
484 2a5j_A RAS-related protein RAB 94.9 0.012 4E-07 55.4 2.9 22 466-487 23-44 (191)
485 3dz8_A RAS-related protein RAB 94.9 0.011 3.8E-07 55.6 2.6 22 466-487 25-46 (191)
486 2ce7_A Cell division protein F 94.9 0.0069 2.4E-07 67.3 1.3 35 452-488 39-73 (476)
487 1x3s_A RAS-related protein RAB 94.9 0.012 4.2E-07 54.8 2.9 22 466-487 17-38 (195)
488 3cph_A RAS-related protein SEC 94.9 0.012 4.1E-07 55.8 2.9 23 465-487 21-43 (213)
489 1zj6_A ADP-ribosylation factor 94.9 0.013 4.3E-07 54.9 2.9 23 464-486 16-38 (187)
490 1cr0_A DNA primase/helicase; R 94.8 0.0078 2.7E-07 61.4 1.5 111 526-651 39-151 (296)
491 2o52_A RAS-related protein RAB 94.8 0.013 4.4E-07 55.9 3.0 22 466-487 27-48 (200)
492 1jbk_A CLPB protein; beta barr 94.8 0.015 5.1E-07 53.4 3.2 27 462-488 41-67 (195)
493 2h17_A ADP-ribosylation factor 94.8 0.012 3.9E-07 55.0 2.5 21 466-486 23-43 (181)
494 2f6r_A COA synthase, bifunctio 94.8 0.012 4.2E-07 60.3 2.9 23 464-486 75-97 (281)
495 3be4_A Adenylate kinase; malar 94.8 0.013 4.5E-07 57.1 3.0 26 463-488 4-29 (217)
496 3reg_A RHO-like small GTPase; 94.8 0.013 4.5E-07 55.1 2.9 22 466-487 25-46 (194)
497 2atv_A RERG, RAS-like estrogen 94.8 0.013 4.5E-07 55.3 2.9 23 465-487 29-51 (196)
498 1pzn_A RAD51, DNA repair and r 94.8 0.0079 2.7E-07 63.9 1.5 75 526-606 135-216 (349)
499 1jwy_B Dynamin A GTPase domain 94.8 0.013 4.3E-07 60.0 2.9 23 466-488 26-48 (315)
500 3bos_A Putative DNA replicatio 94.8 0.015 5E-07 56.0 3.3 29 463-491 51-79 (242)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=5.2e-77 Score=728.81 Aligned_cols=337 Identities=17% Similarity=0.215 Sum_probs=275.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccc--ch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy845 179 SVYLRSVFQNMWSMLFAFLMICFVFPWFAL--PL---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWF 253 (677)
Q Consensus 179 ~~~~~~~~q~~~~~~f~~~~~~~~~~~f~~--~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~l 253 (677)
.+.-+++..++..++|+|++.. +++|||. ++ +|+|+|.+.+++.+ +..++.+++++++++++++++++++|++
T Consensus 161 ~~~~~r~~~~lR~~~~~~ll~~-~~~~fd~~~~G~l~sr~~~D~~~i~~~~-~~~l~~~~~~~~~~i~~~i~~~~~~~~l 238 (1321)
T 4f4c_A 161 LYVAEQMNNRLRREFVKSILRQ-EISWFDTNHSGTLATKLFDNLERVKEGT-GDKIGMAFQYLSQFITGFIVAFTHSWQL 238 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-CHHHHHHTCCTTHHHHHHHHHHHHHHTS-SHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCC-CHHHHCCCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566667999999986 6799953 34 55566666666644 4567789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 254 ALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMA 333 (677)
Q Consensus 254 al~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 333 (677)
+++++.++|++.++...+.+..++..+..+...++..+.++|.++|+++||+|+.|+.+.++|.+..++..+...+....
T Consensus 239 ~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 318 (1321)
T 4f4c_A 239 TLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLF 318 (1321)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888888888888888888778888888999999999999999999999999999999888877665554443
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q psy845 334 MRWLAVRIDVLAV--IAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLVP 411 (677)
Q Consensus 334 ~~~~~~~l~~l~~--l~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~~~ 411 (677)
.........++.. .+.++++|.+++.+|.+++|.+.+++.+...+..|+..+...+..++.+.+|++|+.++++. ++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~-~~ 397 (1321)
T 4f4c_A 319 LGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDR-KP 397 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-SC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Cc
Confidence 3333333333322 23455667778899999999999999999999999999999999999999999999999943 33
Q ss_pred CCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCC-CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC
Q psy845 412 EGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDN-WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL 490 (677)
Q Consensus 412 e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~-~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p 490 (677)
+.+.+.+ ......+.+|+|+|+||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|
T Consensus 398 ~~~~~~~-------~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~ 470 (1321)
T 4f4c_A 398 VIDSSSK-------AGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV 470 (1321)
T ss_dssp CSSCSSS-------CCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCC
T ss_pred ccccccc-------ccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccccc
Confidence 3221111 011122356899999999999864 45799999999999999999999999999999999999999
Q ss_pred CccEEEECCEecccccHHHhhhhcccccCCccccc
Q psy845 491 SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 525 (677)
Q Consensus 491 ~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~ 525 (677)
++|+|.+||+|+++++.+++|++||||||||.||+
T Consensus 471 ~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~ 505 (1321)
T 4f4c_A 471 LKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFN 505 (1321)
T ss_dssp SEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCS
T ss_pred ccCcccCCCccchhccHHHHhhcccccCCcceeeC
Confidence 99999999999999999999999999999999999
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=5.6e-69 Score=656.48 Aligned_cols=337 Identities=16% Similarity=0.173 Sum_probs=271.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccc-c-h---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy845 179 SVYLRSVFQNMWSMLFAFLMICFVFPWFAL-P-L---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWF 253 (677)
Q Consensus 179 ~~~~~~~~q~~~~~~f~~~~~~~~~~~f~~-~-~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~l 253 (677)
.+...++.+++..++|+|++.. ++.|||. | + .|+|+|.+.+++.+. ..+..++++++++++.++++++.+|++
T Consensus 133 ~~~~~~~~~~lr~~l~~~l~~~-~~~~f~~~~~G~l~sr~~~D~~~i~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l 210 (1284)
T 3g5u_A 133 CLAAGRQIHKIRQKFFHAIMNQ-EIGWFDVHDVGELNTRLTDDVSKINEGIG-DKIGMFFQAMATFFGGFIIGFTRGWKL 210 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-TTHHHHSCCSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-CHHHHccCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666999999996 6699963 4 3 666777777777654 457788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 254 ALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMA 333 (677)
Q Consensus 254 al~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 333 (677)
+++++++.|++.++..++.+..++..+..++..++.+++++|+++|+++||+|++|+++.++|++..++..+...+....
T Consensus 211 ~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 290 (1284)
T 3g5u_A 211 TLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAIT 290 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999899998888888888888888888888899999999999999999999999999999999988877655443333
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q psy845 334 MRWLAVRIDVLAV--IAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLVP 411 (677)
Q Consensus 334 ~~~~~~~l~~l~~--l~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~~~ 411 (677)
.........++.. .+.++++|..++..|.+++|.+.+++.+......++..+...+..++.+..+++|+.++++. ++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~-~~ 369 (1284)
T 3g5u_A 291 ANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDN-KP 369 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CC
Confidence 3222222222222 23456667778899999999888777777777889999999999999999999999999943 33
Q ss_pred CCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCC-CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC
Q psy845 412 EGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDN-WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL 490 (677)
Q Consensus 412 e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~-~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p 490 (677)
+.+...+. .....+.+|+|+++||+|+|+++ ++++|+|+||++++||++|||||||||||||+++|+|+|+|
T Consensus 370 ~~~~~~~~-------~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~ 442 (1284)
T 3g5u_A 370 SIDSFSKS-------GHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP 442 (1284)
T ss_dssp CCSSCCSS-------CCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCC
T ss_pred cCCccccc-------CCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 32211110 00111246789999999999864 34799999999999999999999999999999999999999
Q ss_pred CccEEEECCEecccccHHHhhhhcccccCCccccc
Q psy845 491 SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 525 (677)
Q Consensus 491 ~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~ 525 (677)
++|+|.+||+|+++++.+++|+++|+|||||.||+
T Consensus 443 ~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~ 477 (1284)
T 3g5u_A 443 LDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFA 477 (1284)
T ss_dssp SEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCS
T ss_pred CCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCC
Confidence 99999999999999999999999999999999987
No 3
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.8e-66 Score=587.06 Aligned_cols=435 Identities=21% Similarity=0.270 Sum_probs=355.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc-cc-h---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy845 174 SKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFA-LP-L---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICF 248 (677)
Q Consensus 174 ~~~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~-~~-~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~ 248 (677)
...+..+..+++..++..++|+|++.. +..||+ .+ + .++|+|.+.+++.+. ..+..++...+.+++++++++.
T Consensus 83 ~~~~~~~~~~~~~~~lr~~l~~~ll~~-~~~~~~~~~~G~l~~r~~~D~~~i~~~~~-~~~~~~~~~~~~~i~~~~~l~~ 160 (587)
T 3qf4_A 83 CTVFASYASQNFGADLRRDLFRKVLSF-SISNVNRFHTSSLITRLTNDVTQLQNLVM-MLLRIVVRAPLLFVGGIVMAVS 160 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHSCHHHHHHHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHccCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 333344555666667777999999987 458884 33 3 666666766766554 3556678888888888888899
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q psy845 249 VFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLF 328 (677)
Q Consensus 249 ~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~ 328 (677)
++|++++++++.+++..++..++.++.++..+..++..+++++.++|.++|+++||+|++|+.+.++|++..++..+...
T Consensus 161 ~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~ 240 (587)
T 3qf4_A 161 INVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSII 240 (587)
T ss_dssp HCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 99999888888888888777777777777777777778899999999999999999999999999999998888776655
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy845 329 LCSMAMRWLAVRIDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCS 406 (677)
Q Consensus 329 ~~~~~~~~~~~~l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil 406 (677)
+......+.......+..+ +.++++|.+++.+|.+++|.+.+++.+...+..|+..+...+..++++..|.+|+.+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l 320 (587)
T 3qf4_A 241 SAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVL 320 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333333333332221 33455666788899999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhc
Q psy845 407 KKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 407 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r 486 (677)
+. +++.+.+.. ....++..+.|+++||+|+|+++.+++|+|+||++++||++|||||||||||||+++|+|
T Consensus 321 ~~-~~~~~~~~~--------~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 321 NE-KPAIEEADN--------ALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp HC-CCSCCCCTT--------CBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTT
T ss_pred cC-CCccCCCCC--------ccccCCCCCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 53 333221111 011113457899999999998665679999999999999999999999999999999999
Q ss_pred CCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHH
Q psy845 487 LVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELE 566 (677)
Q Consensus 487 ~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~ 566 (677)
+|+|++|+|.+||+|++++ +.+
T Consensus 392 ~~~~~~G~i~i~g~~i~~~----------------------------------------------------------~~~ 413 (587)
T 3qf4_A 392 LIDPERGRVEVDELDVRTV----------------------------------------------------------KLK 413 (587)
T ss_dssp SSCCSEEEEEESSSBGGGB----------------------------------------------------------CHH
T ss_pred CccCCCcEEEECCEEcccC----------------------------------------------------------CHH
Confidence 9999999999999999988 888
Q ss_pred HHhhhcccccccccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHH
Q psy845 567 TLRSRLSVIPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARA 643 (677)
Q Consensus 567 ~LR~~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARA 643 (677)
++|++++||||||.+|++|++|||.++. +.++++++++++.++++++++++|+|+||.+ +|.+||||||||++||||
T Consensus 414 ~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARa 493 (587)
T 3qf4_A 414 DLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARA 493 (587)
T ss_dssp HHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHH
T ss_pred HHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHH
Confidence 9999999999999999999999999765 5788999999999999999999999999999 799999999999999999
Q ss_pred Hhccchhh-----------------------cccccce------ecccccccEEEEEeCCeeC
Q psy845 644 LLRKTKKK-----------------------KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 644 LLr~p~IL-----------------------~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
+++||+++ ..+++|+ +++++.||||+||++|+++
T Consensus 494 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~ 556 (587)
T 3qf4_A 494 LVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVA 556 (587)
T ss_dssp HHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEE
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEE
Confidence 99999977 1356772 5577889999999999984
No 4
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=2.4e-65 Score=579.33 Aligned_cols=437 Identities=19% Similarity=0.249 Sum_probs=359.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc--ch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy845 170 YHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFAL--PL---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFL 244 (677)
Q Consensus 170 ~~~~~~~~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~~--~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v 244 (677)
.+.+.........+++.+++...+|+|+... +..||+. ++ .++|+|.+.+++.+. ..+..++.+++.++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~-~~~~~~~~~~g~l~~rl~~d~~~i~~~~~-~~~~~~~~~~~~~i~~~~ 158 (582)
T 3b5x_A 81 SGFASSYCLSWVSGNVVMQMRRRLFNHFMHM-PVRFFDQESTGGLLSRITYDSEQVAGATS-RALVSIVREGASIIGLLT 158 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3333333334444555555666999999986 5599964 33 566667777766553 456778889999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHH
Q psy845 245 MICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENS 324 (677)
Q Consensus 245 ~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~ 324 (677)
++++++|++++++++..++..++...+.+..++..+..++..+++.+.+.|.++|+++||+|+.|+.+.++|++..++..
T Consensus 159 ~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~ 238 (582)
T 3b5x_A 159 LMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMR 238 (582)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 99999999998888888888888888888888877777788889999999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 325 TTLFLCSMAMRWLAVRIDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERI 402 (677)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI 402 (677)
+...+......+.....+.+..+ +.++++|.+.+.+|.+++|.+.+++.+...+..|+..+...+..++.+..+++|+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri 318 (582)
T 3b5x_A 239 QQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTL 318 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666555555555544444432 2344556678889999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHH
Q psy845 403 NNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLV 482 (677)
Q Consensus 403 ~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~ 482 (677)
.++++. +++.+.+ . . ..++..+.|+++||+|+|+++++++|+|+||++++||++|||||||||||||++
T Consensus 319 ~~~l~~-~~~~~~~-~--------~-~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~ 387 (582)
T 3b5x_A 319 FGLMDL-ETERDNG-K--------Y-EAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIAN 387 (582)
T ss_pred HHHHcC-CCcCCCC-C--------C-CCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHH
Confidence 999843 3321111 0 0 111234679999999999754356999999999999999999999999999999
Q ss_pred HHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhh
Q psy845 483 ALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 562 (677)
Q Consensus 483 LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~ 562 (677)
+|+|+|+|++|+|.+||+|+++.
T Consensus 388 ~l~g~~~p~~G~i~~~g~~~~~~--------------------------------------------------------- 410 (582)
T 3b5x_A 388 LFTRFYDVDSGSICLDGHDVRDY--------------------------------------------------------- 410 (582)
T ss_pred HHhcCCCCCCCEEEECCEEhhhC---------------------------------------------------------
Confidence 99999999999999999999887
Q ss_pred hhHHHHhhhcccccccccccccchhhccccCC--CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHH
Q psy845 563 VELETLRSRLSVIPQDPVLFNGTIRYNLDPFG--RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLL 638 (677)
Q Consensus 563 ~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~--~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRI 638 (677)
+.+++|++++||||||.+|++|++||+.++. +.++++++++++.++++++++++|+|+||.+ +|.+||||||||+
T Consensus 411 -~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~ 489 (582)
T 3b5x_A 411 -KLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRV 489 (582)
T ss_pred -CHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHH
Confidence 7788999999999999999999999998764 5678999999999999999999999999999 7999999999999
Q ss_pred HHHHHHhccchhh-----------------------cccccce------ecccccccEEEEEeCCeeC
Q psy845 639 CLARALLRKTKKK-----------------------KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 639 aIARALLr~p~IL-----------------------~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
+||||+++||+++ ..+++|+ +++++.||||+||++|+++
T Consensus 490 ~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~ 557 (582)
T 3b5x_A 490 AIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEII 557 (582)
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEE
Confidence 9999999999976 1246772 4567789999999999984
No 5
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=8.6e-66 Score=582.74 Aligned_cols=444 Identities=21% Similarity=0.300 Sum_probs=360.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhcccccccc--ch---hHHhhhHHHHHHHhhhhHHHHHHHH
Q psy845 165 IITTLYHLISKVFRSVYLRSVFQ----NMWSMLFAFLMICFVFPWFAL--PL---LIITTLYHLISKVFRSVYLRSVFQN 235 (677)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~q----~~~~~~f~~~~~~~~~~~f~~--~~---~~~t~~~~~i~~v~~s~~l~~il~~ 235 (677)
++..+.+.++...+.+....+++ ++..++|+|++... ..||+. ++ .++++|.+.+++.+.. .+..++.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~-~~~~~~~~~G~l~~r~~~D~~~i~~~~~~-~~~~~~~~ 145 (578)
T 4a82_A 68 FIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALS-ARFYANNQVGQVISRVINDVEQTKDFILT-GLMNIWLD 145 (578)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-HHHHHTSCHHHHHHHHHHHHHHTHHHHHC-CCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHcCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 33344455555555555555555 45558999999874 599953 34 5556666666665543 34557778
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHH
Q psy845 236 MWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRR 315 (677)
Q Consensus 236 ~~~ll~~~v~l~~~~~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~ 315 (677)
++.+++++++++.++|++++++++..+++..+...+.++.++..+...+..++..+.+.|.++|+++||+|+.|+.+.++
T Consensus 146 ~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~ 225 (578)
T 4a82_A 146 CITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKN 225 (578)
T ss_dssp HHHHHHHHHHHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHH
Confidence 88888888889999999999888888888888888888888888778888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 316 FCEQYDENSTTLFLCSMAMRWLAVRIDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETE 393 (677)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~ 393 (677)
|++..++..+...+..............+..+ +.++++|.+++.+|.+++|.+.+++.+...+..|+..+...+..++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~ 305 (578)
T 4a82_A 226 FDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLT 305 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998887766555444433333333333322 3345566778889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCC
Q psy845 394 LNFLAVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRT 473 (677)
Q Consensus 394 ~~~~s~eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpS 473 (677)
++..|++|+.++++. +++.+.+.. .....+..++|+++||+|+|+++++++|+|+||++++||++||||||
T Consensus 306 ~~~~s~~ri~~~l~~-~~~~~~~~~--------~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~s 376 (578)
T 4a82_A 306 QSFASMDRVFQLIDE-DYDIKNGVG--------AQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMS 376 (578)
T ss_dssp HHHHHHHHHHHHHTC-CCSSCCCTT--------CCCCCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECST
T ss_pred HHHHHHHHHHHHHcC-CCcccCCCC--------ccccCCCCCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCC
Confidence 999999999999943 333221111 01112245789999999999875567999999999999999999999
Q ss_pred CCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccc
Q psy845 474 GAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQI 553 (677)
Q Consensus 474 GSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i 553 (677)
|||||||+++|+|+|+|++|+|.+||+|++++
T Consensus 377 GsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~------------------------------------------------ 408 (578)
T 4a82_A 377 GGGKSTLINLIPRFYDVTSGQILIDGHNIKDF------------------------------------------------ 408 (578)
T ss_dssp TSSHHHHHTTTTTSSCCSEEEEEETTEEGGGS------------------------------------------------
T ss_pred CChHHHHHHHHhcCCCCCCcEEEECCEEhhhC------------------------------------------------
Confidence 99999999999999999999999999999988
Q ss_pred cccccchhhhhHHHHhhhcccccccccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCC
Q psy845 554 KIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQL 630 (677)
Q Consensus 554 ~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~L 630 (677)
+.+++|+++|||||||.+|++|++||+.++. +.++++++++++.++++++++++|+|+||.+ +|.+|
T Consensus 409 ----------~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~L 478 (578)
T 4a82_A 409 ----------LTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKL 478 (578)
T ss_dssp ----------CHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTS
T ss_pred ----------CHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcC
Confidence 7889999999999999999999999998764 5788999999999999999999999999999 79999
Q ss_pred ChHHHHHHHHHHHHhccchhh-----------------------cccccce------ecccccccEEEEEeCCeeC
Q psy845 631 SLGEKQLLCLARALLRKTKKK-----------------------KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 631 SGGQRQRIaIARALLr~p~IL-----------------------~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
|||||||++||||+++||+++ ..+++|+ +++++.||||+||++|+++
T Consensus 479 SgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~ 554 (578)
T 4a82_A 479 SGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIV 554 (578)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEE
Confidence 999999999999999999976 1346672 5678889999999999984
No 6
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=5.2e-65 Score=576.55 Aligned_cols=430 Identities=18% Similarity=0.241 Sum_probs=356.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccccc--ch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy845 177 FRSVYLRSVFQNMWSMLFAFLMICFVFPWFAL--PL---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFP 251 (677)
Q Consensus 177 ~~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~~--~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~ 251 (677)
......+++.+++..++|+|++.. +..||+. ++ .++|+|.+.+++.+. ..+..++.+++.+++.++++++++|
T Consensus 88 ~~~~~~~~~~~~lr~~l~~~l~~~-~~~~~~~~~~g~l~~r~~~d~~~i~~~~~-~~~~~~~~~~~~~i~~~~~l~~~~~ 165 (582)
T 3b60_A 88 CISWVSGKVVMTMRRRLFGHMMGM-PVAFFDKQSTGTLLSRITYDSEQVASSSS-GALITVVREGASIIGLFIMMFYYSW 165 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC-CSTHHHHSCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC-CHHHHCCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 334444555556666999999986 5699953 33 566667776766543 4567788899999999989999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 252 WFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCS 331 (677)
Q Consensus 252 ~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~ 331 (677)
++++++++..++..++...+.++.++..+..++..+++.+.+.|.++|+++||+|+.|+.+.++|++..++..+...+..
T Consensus 166 ~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 245 (582)
T 3b60_A 166 QLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMV 245 (582)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888888888888888888877778888899999999999999999999999999999999988887766666
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy845 332 MAMRWLAVRIDVLAVIA--MAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKL 409 (677)
Q Consensus 332 ~~~~~~~~~l~~l~~l~--~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~ 409 (677)
....+.....+++..+. .++++|.+.+.+|.+++|.+.+++.++..+..|+..+...+.+++.+..+++|+.++++.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~- 324 (582)
T 3b60_A 246 SASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDS- 324 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-
Confidence 55555555555444432 234445556778999999999999999999999999999999999999999999999943
Q ss_pred CCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC
Q psy845 410 VPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE 489 (677)
Q Consensus 410 ~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~ 489 (677)
+++.+.+ . . ..++..+.|+++||+|+|+++++++|+|+||++++||++|||||||||||||+++|+|+++
T Consensus 325 ~~~~~~~-~--------~-~~~~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 325 EQEKDEG-K--------R-VIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp CCSCCCC-C--------B-CCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred CCCccCC-C--------C-CCCCCCCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 3332111 0 0 1112346799999999997543469999999999999999999999999999999999999
Q ss_pred CCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHh
Q psy845 490 LSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR 569 (677)
Q Consensus 490 p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR 569 (677)
|++|+|.+||+|++++ +.+++|
T Consensus 395 p~~G~i~~~g~~~~~~----------------------------------------------------------~~~~~~ 416 (582)
T 3b60_A 395 IDEGHILMDGHDLREY----------------------------------------------------------TLASLR 416 (582)
T ss_dssp CSEEEEEETTEETTTB----------------------------------------------------------CHHHHH
T ss_pred CCCCeEEECCEEcccc----------------------------------------------------------CHHHHH
Confidence 9999999999999887 778899
Q ss_pred hhcccccccccccccchhhccccCC--CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHh
Q psy845 570 SRLSVIPQDPVLFNGTIRYNLDPFG--RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALL 645 (677)
Q Consensus 570 ~~I~~V~Qd~~LFsgTIrENI~~~~--~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALL 645 (677)
++++||||||.+|++|++||+.++. +.++++++++++.++++++++++|+|+||.+ +|.+||||||||++||||++
T Consensus 417 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~ 496 (582)
T 3b60_A 417 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL 496 (582)
T ss_dssp HTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred hhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998764 5778999999999999999999999999999 79999999999999999999
Q ss_pred ccchhh-----------------------cccccce------ecccccccEEEEEeCCeeC
Q psy845 646 RKTKKK-----------------------KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 646 r~p~IL-----------------------~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
+||+++ ..+++|+ +++++.||||+||++|+++
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~ 557 (582)
T 3b60_A 497 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIV 557 (582)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEE
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEE
Confidence 999976 1246772 5667889999999999984
No 7
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.9e-66 Score=589.03 Aligned_cols=429 Identities=22% Similarity=0.315 Sum_probs=356.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccc-cc-h---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy845 178 RSVYLRSVFQNMWSMLFAFLMICFVFPWFA-LP-L---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPW 252 (677)
Q Consensus 178 ~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~-~~-~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~ 252 (677)
.....+++..++..++|+|++.. +..||+ .+ + .++++|.+.+++.+. ..+..++.+++.+++++++++.++|+
T Consensus 101 ~~~~~~~~~~~lr~~l~~~ll~~-~~~~~~~~~~G~l~~r~~~D~~~i~~~~~-~~~~~~~~~~~~~i~~~~~l~~~~~~ 178 (598)
T 3qf4_B 101 MLTLSQDVVFRLRKELFEKLQRV-PVGFFDRTPHGDIISRVINDVDNINNVLG-NSIIQFFSGIVTLAGAVIMMFRVNVI 178 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-CTHHHHHSCHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC-CHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556667999999997 459995 33 3 566667777776554 45567888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 253 FALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSM 332 (677)
Q Consensus 253 lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~~ 332 (677)
++++++++.++..++...+.+..++..+..++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...+...
T Consensus 179 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 258 (598)
T 3qf4_B 179 LSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQI 258 (598)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888888888888888888777788888999999999999999999999999999999998887766555444
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy845 333 AMRWLAVRIDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLV 410 (677)
Q Consensus 333 ~~~~~~~~l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~~ 410 (677)
...+.....+.+..+ +.++++|.+++.+|.+++|.+.+++.+...+..|+..+...+..++.+..|++|+.++++ .+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~-~~ 337 (598)
T 3qf4_B 259 FSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILD-LE 337 (598)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 433333333333332 334556667888999999999999999999999999999999999999999999999994 33
Q ss_pred CCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC
Q psy845 411 PEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL 490 (677)
Q Consensus 411 ~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p 490 (677)
++.+.+. ....++..++|+++||+|+|+++ +++|+|+||++++||++|||||||||||||+++|+|+|+|
T Consensus 338 ~~~~~~~---------~~~~~~~~~~i~~~~v~~~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p 407 (598)
T 3qf4_B 338 EEKDDPD---------AVELREVRGEIEFKNVWFSYDKK-KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV 407 (598)
T ss_dssp CCCCCSS---------CCCCCSCCCCEEEEEEECCSSSS-SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC
T ss_pred CCCCCCC---------CCCCCCCCCeEEEEEEEEECCCC-CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC
Confidence 3322111 01112345789999999999764 4699999999999999999999999999999999999999
Q ss_pred CccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhh
Q psy845 491 SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS 570 (677)
Q Consensus 491 ~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~ 570 (677)
++|+|.+||+|++++ +.+++|+
T Consensus 408 ~~G~i~~~g~~i~~~----------------------------------------------------------~~~~~r~ 429 (598)
T 3qf4_B 408 DRGQILVDGIDIRKI----------------------------------------------------------KRSSLRS 429 (598)
T ss_dssp SEEEEEETTEEGGGS----------------------------------------------------------CHHHHHH
T ss_pred CCeEEEECCEEhhhC----------------------------------------------------------CHHHHHh
Confidence 999999999999988 7889999
Q ss_pred hcccccccccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhcc
Q psy845 571 RLSVIPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRK 647 (677)
Q Consensus 571 ~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~ 647 (677)
+++||||||.+|++|++||+.++. +.++++++++++.++++++++++|+|+||.+ +|.+||||||||+|||||++++
T Consensus 430 ~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~ 509 (598)
T 3qf4_B 430 SIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLAN 509 (598)
T ss_dssp HEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTC
T ss_pred ceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999998764 5788999999999999999999999999999 8999999999999999999999
Q ss_pred chhh-----------------------cccccce------ecccccccEEEEEeCCeeC
Q psy845 648 TKKK-----------------------KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 648 p~IL-----------------------~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
|+++ ..+++|+ +++++.||||+||++|+++
T Consensus 510 p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~ 568 (598)
T 3qf4_B 510 PKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIV 568 (598)
T ss_dssp CSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEE
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEE
Confidence 9976 1256772 5677889999999999984
No 8
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=6.9e-64 Score=568.68 Aligned_cols=430 Identities=19% Similarity=0.218 Sum_probs=351.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccc--ch---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy845 179 SVYLRSVFQNMWSMLFAFLMICFVFPWFAL--PL---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWF 253 (677)
Q Consensus 179 ~~~~~~~~q~~~~~~f~~~~~~~~~~~f~~--~~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~l 253 (677)
....+++..++..++|+|++.. +..||+. ++ .++|+|.+.+++.+ ...+..++.+++.+++.++++++++|++
T Consensus 87 ~~~~~~~~~~lr~~l~~~l~~~-~~~~~~~~~~g~l~~r~~~d~~~i~~~~-~~~~~~~~~~~~~~i~~~~~l~~~~~~l 164 (595)
T 2yl4_A 87 QTSGQRIVNRLRTSLFSSILRQ-EVAFFDKTRTGELINRLSSDTALLGRSV-TENLSDGLRAGAQASVGISMMFFVSPNL 164 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS-CHHHHHHSCHHHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-CHHHHCCCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3344455555666999999987 4599953 34 55566666666544 4466778888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 254 ALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMA 333 (677)
Q Consensus 254 al~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 333 (677)
++++++..++..++...+.+..++..+..++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+....
T Consensus 165 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 244 (595)
T 2yl4_A 165 ATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFA 244 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888887777778888877777777777788999999999999999999999999999999988887766555554
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q psy845 334 MRWLAVRIDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLVP 411 (677)
Q Consensus 334 ~~~~~~~l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~~~ 411 (677)
..+.......+..+ +.++++|.+++.+|.+++|.+.+++.++..+..|+..+...+..++++..+++|+.++++ .++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~-~~~ 323 (595)
T 2yl4_A 245 RAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLE-REP 323 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCC
Confidence 44444444433332 234556677888999999999999999999999999999999999999999999999994 333
Q ss_pred CCCCCCCCccccccccccCCCCCcc-EEEEeeeEEeCCC-CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC
Q psy845 412 EGRGPITSEFGQVKVKLADWPRQGT-IKFKNVSLRYRDN-WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE 489 (677)
Q Consensus 412 e~~~~~~~~~~~~~~~~~~~~~~g~-I~fknVsFsY~~~-~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~ 489 (677)
+.+.+.. .. ...+..++ |+++||+|+|+++ ++++|+|+||++++||++|||||||||||||+++|+|+++
T Consensus 324 ~~~~~~~-------~~-~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 324 KLPFNEG-------VI-LNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp SSCSSCS-------BC-CCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSC
T ss_pred ccCCCCC-------CC-CCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 2211100 01 10123467 9999999999754 3469999999999999999999999999999999999999
Q ss_pred CCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHh
Q psy845 490 LSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR 569 (677)
Q Consensus 490 p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR 569 (677)
|++|+|.+||+|++++ +.+++|
T Consensus 396 p~~G~i~~~g~~i~~~----------------------------------------------------------~~~~~~ 417 (595)
T 2yl4_A 396 PASGTISLDGHDIRQL----------------------------------------------------------NPVWLR 417 (595)
T ss_dssp CSEEEEEETTEETTTB----------------------------------------------------------CHHHHH
T ss_pred CCCcEEEECCEEhhhC----------------------------------------------------------CHHHHH
Confidence 9999999999999888 777899
Q ss_pred hhcccccccccccccchhhccccCCC----CChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHH
Q psy845 570 SRLSVIPQDPVLFNGTIRYNLDPFGR----CHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARA 643 (677)
Q Consensus 570 ~~I~~V~Qd~~LFsgTIrENI~~~~~----~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARA 643 (677)
++++||||||.+|++|++|||.++.. .++++++++++.++++++++++|+|+||.+ +|.+||||||||++||||
T Consensus 418 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAra 497 (595)
T 2yl4_A 418 SKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARA 497 (595)
T ss_dssp HSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHH
T ss_pred hceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHH
Confidence 99999999999999999999987542 678899999999999999999999999999 799999999999999999
Q ss_pred Hhccchhh-----------------------cccccce------ecccccccEEEEEeCCeeC
Q psy845 644 LLRKTKKK-----------------------KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 644 LLr~p~IL-----------------------~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
++++|+++ ..+++|+ +++++.||||+||++|+++
T Consensus 498 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~ 560 (595)
T 2yl4_A 498 LLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKIT 560 (595)
T ss_dssp HHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEE
T ss_pred HHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEE
Confidence 99999976 1246772 4567789999999999984
No 9
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=2.4e-49 Score=417.38 Aligned_cols=221 Identities=31% Similarity=0.458 Sum_probs=187.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEE
Q psy845 389 FVETELNFLAVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIG 468 (677)
Q Consensus 389 ~~~l~~~~~s~eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VA 468 (677)
+.+++.+.++++|+.++++.. ++...... .. ...+..+.|+++||+|+|+++ +++|+|+||+|++||++|
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~-~~~~~~~~-------~~-~~~~~~~~i~~~~vs~~y~~~-~~vL~~isl~i~~Ge~va 84 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEE-TEVKDLPG-------AG-PLRFQKGRIEFENVHFSYADG-RETLQDVSFTVMPGQTLA 84 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHH-HSCCCCTT-------CB-CCCCSSCCEEEEEEEEESSTT-CEEEEEEEEEECTTCEEE
T ss_pred chhHHHHHHHHHHHHHHHhCC-cccccccc-------cc-ccCCCCCeEEEEEEEEEcCCC-CceeeeeeEEEcCCCEEE
Confidence 346778889999999998543 22111110 00 111235789999999999754 469999999999999999
Q ss_pred EEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhh
Q psy845 469 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVEL 548 (677)
Q Consensus 469 IVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~ 548 (677)
||||||||||||+++|+|+|+|++|+|.+||+|++++
T Consensus 85 ivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~------------------------------------------- 121 (306)
T 3nh6_A 85 LVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQV------------------------------------------- 121 (306)
T ss_dssp EESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSB-------------------------------------------
T ss_pred EECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccC-------------------------------------------
Confidence 9999999999999999999999999999999999988
Q ss_pred ccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC-CCChHHHHHHHHHccchhhHhhhhcccCCCC--
Q psy845 549 SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV-- 625 (677)
Q Consensus 549 ~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v-- 625 (677)
+.+++|++||||||+|.+|++||+|||.++. ..++++++++++.+++++++..+|+|++|.+
T Consensus 122 ---------------~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~ 186 (306)
T 3nh6_A 122 ---------------TQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGE 186 (306)
T ss_dssp ---------------CHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEEST
T ss_pred ---------------CHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcC
Confidence 7889999999999999999999999998765 5678999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHhccchhh-----------------------cccccc-e-----ecccccccEEEEEeCCee
Q psy845 626 QGDQLSLGEKQLLCLARALLRKTKKK-----------------------KKSGVN-I-----TRPVTSCDKVLVMDNGQA 676 (677)
Q Consensus 626 ~G~~LSGGQRQRIaIARALLr~p~IL-----------------------~~~~~T-I-----LsTI~~aDrIlVLd~GrI 676 (677)
+|.+||||||||+||||||+++|+++ ..+++| | +++++.||||+||++|+|
T Consensus 187 ~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~aD~i~vl~~G~i 266 (306)
T 3nh6_A 187 RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCI 266 (306)
T ss_dssp TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHTCSEEEEEETTEE
T ss_pred CcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHcCCEEEEEECCEE
Confidence 79999999999999999999999977 124567 2 567788999999999998
Q ss_pred C
Q psy845 677 L 677 (677)
Q Consensus 677 V 677 (677)
+
T Consensus 267 v 267 (306)
T 3nh6_A 267 V 267 (306)
T ss_dssp E
T ss_pred E
Confidence 5
No 10
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.6e-44 Score=442.14 Aligned_cols=434 Identities=20% Similarity=0.263 Sum_probs=338.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccccc---c-h---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy845 178 RSVYLRSVFQNMWSMLFAFLMICFVFPWFAL---P-L---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVF 250 (677)
Q Consensus 178 ~~~~~~~~~q~~~~~~f~~~~~~~~~~~f~~---~-~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~ 250 (677)
..+...++.+++...+|+|++.. +++|||+ | + .|+++|.+.+++.+ +..+..++.+++++++.++++++.+
T Consensus 818 ~~~~~~~~~~~lr~~l~~~il~~-~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l-~~~l~~~~~~~~~~i~~~~~~~~~~ 895 (1321)
T 4f4c_A 818 MGIASESLTRDLRNKLFRNVLSQ-HIGFFDSPQNASGKISTRLATDVPNLRTAI-DFRFSTVITTLVSMVAGIGLAFFYG 895 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTS-CSSSTTSGGGCHHHHHHHHHTHHHHHHTTT-SHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-CchhhccCCCChHHHHhcchhhHHHHHHHH-HHHHHHHHHHhhhHHHHeeeehHHh
Confidence 34445555666777999999985 6799974 4 3 55566666666644 4567789999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q psy845 251 PWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLC 330 (677)
Q Consensus 251 ~~lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~ 330 (677)
|+++++++++++++.+....+.+..++......+..++..+.+.|+++|+++||+|++|+++.++|.+..+...+...+.
T Consensus 896 ~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~ 975 (1321)
T 4f4c_A 896 WQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKE 975 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888877777666655443333333344466778899999999999999999999999999998877665544
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy845 331 SMAMRWLAVRIDVLAVI--AMAIITGLTVAFHGSV--SPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCS 406 (677)
Q Consensus 331 ~~~~~~~~~~l~~l~~l--~~~l~~g~~lv~~G~l--s~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil 406 (677)
.....+.......+..+ +.++++|..++..|.. +.+.+..++.+......++..+.+...+++.+..|++|+.+++
T Consensus 976 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l 1055 (1321)
T 4f4c_A 976 AFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGML 1055 (1321)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 43332222222222211 2334455555666654 4444444344444445677788888899999999999999999
Q ss_pred hhcCCCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCC-CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHh
Q psy845 407 KKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDN-WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALF 485 (677)
Q Consensus 407 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~-~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~ 485 (677)
+. +++.+... ..+..++..|+|+|+||+|+||++ +.+||+|+||+|+|||+||||||||||||||+++|+
T Consensus 1056 ~~-~~~~~~~~--------~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~ 1126 (1321)
T 4f4c_A 1056 RK-ISKIDSLS--------LAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLE 1126 (1321)
T ss_dssp HC-CCSSCTTC--------CCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHT
T ss_pred hC-cccCCCcc--------CCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHh
Confidence 43 33322111 122345677899999999999865 347999999999999999999999999999999999
Q ss_pred cCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhH
Q psy845 486 RLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL 565 (677)
Q Consensus 486 r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~ 565 (677)
|+|+|++|+|.+||+|+++++.+++|+++++|||||+||+|||++|
T Consensus 1127 rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreN---------------------------------- 1172 (1321)
T 4f4c_A 1127 RFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAEN---------------------------------- 1172 (1321)
T ss_dssp TSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHH----------------------------------
T ss_pred cCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHH----------------------------------
Confidence 9999999999999999999999999999999999999999999888
Q ss_pred HHHhhhcccccccccccccchhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHH
Q psy845 566 ETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARA 643 (677)
Q Consensus 566 ~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARA 643 (677)
|+-++++ .+++|+|+++||+++++++||++||+||||.+ +|.+||||||||||||||
T Consensus 1173 --------------------I~~gld~-~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARA 1231 (1321)
T 4f4c_A 1173 --------------------IIYGLDP-SSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARA 1231 (1321)
T ss_dssp --------------------HSSSSCT-TTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHH
T ss_pred --------------------HhccCCC-CCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHH
Confidence 2222332 36799999999999999999999999999999 899999999999999999
Q ss_pred Hhccchhh-----------------------cccccc---e---ecccccccEEEEEeCCeeC
Q psy845 644 LLRKTKKK-----------------------KKSGVN---I---TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 644 LLr~p~IL-----------------------~~~~~T---I---LsTI~~aDrIlVLd~GrIV 677 (677)
++|||+|+ ..+++| | ++|+++||||+|||+|||+
T Consensus 1232 llr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~Iv 1294 (1321)
T 4f4c_A 1232 LVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTII 1294 (1321)
T ss_dssp HHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEE
T ss_pred HHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEE
Confidence 99999987 246788 3 7899999999999999985
No 11
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.8e-41 Score=346.43 Aligned_cols=186 Identities=32% Similarity=0.498 Sum_probs=164.0
Q ss_pred CccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 434 ~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
..+|+++||+++|+++..++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 5 ~~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~-------- 76 (247)
T 2ff7_A 5 HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALA-------- 76 (247)
T ss_dssp CEEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTS--------
T ss_pred cCceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhC--------
Confidence 357999999999953224699999999999999999999999999999999999999999999999998776
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccC
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPF 593 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~ 593 (677)
+...+|++++||||++.+|++|++||+.++
T Consensus 77 --------------------------------------------------~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~ 106 (247)
T 2ff7_A 77 --------------------------------------------------DPNWLRRQVGVVLQDNVLLNRSIIDNISLA 106 (247)
T ss_dssp --------------------------------------------------CHHHHHHHEEEECSSCCCTTSBHHHHHTTT
T ss_pred --------------------------------------------------CHHHHHhcEEEEeCCCccccccHHHHHhcc
Confidence 566788999999999999999999999875
Q ss_pred C-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh-------------------
Q psy845 594 G-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK------------------- 651 (677)
Q Consensus 594 ~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL------------------- 651 (677)
. ..+++++.++++.+++.+++.++|+|+++.+ ++.+||||||||++||||++++|+++
T Consensus 107 ~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~ 186 (247)
T 2ff7_A 107 NPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 186 (247)
T ss_dssp CTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 3 3567788999999999999999999999988 78999999999999999999999976
Q ss_pred ----cccccce------ecccccccEEEEEeCCeeC
Q psy845 652 ----KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
..+++|| ++.++.||||++|++|+++
T Consensus 187 ~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~ 222 (247)
T 2ff7_A 187 NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIV 222 (247)
T ss_dssp HHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEE
T ss_pred HHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEE
Confidence 1246673 3345669999999999974
No 12
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=5.1e-41 Score=341.64 Aligned_cols=182 Identities=31% Similarity=0.524 Sum_probs=159.8
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
|+++||+++|+++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 2 l~~~~l~~~y~~~-~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----------- 69 (243)
T 1mv5_A 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNI----------- 69 (243)
T ss_dssp EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTT-----------
T ss_pred EEEEEEEEEeCCC-CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhC-----------
Confidence 6899999999533 4699999999999999999999999999999999999999999999999998776
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccC-C-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPF-G- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~-~- 594 (677)
+...+|++++||||++.+|++|++||+.++ .
T Consensus 70 -----------------------------------------------~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~ 102 (243)
T 1mv5_A 70 -----------------------------------------------SLENWRSQIGFVSQDSAIMAGTIRENLTYGLEG 102 (243)
T ss_dssp -----------------------------------------------SCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTS
T ss_pred -----------------------------------------------CHHHHHhhEEEEcCCCccccccHHHHHhhhccC
Confidence 334568899999999999999999999875 2
Q ss_pred CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh---------------------
Q psy845 595 RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK--------------------- 651 (677)
Q Consensus 595 ~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL--------------------- 651 (677)
..+++++.++++.+++.+++.++|+|+++.+ ++.+||||||||++||||++++|+++
T Consensus 103 ~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l 182 (243)
T 1mv5_A 103 DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL 182 (243)
T ss_dssp CSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHH
T ss_pred CCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 4567789999999999999999999999988 68999999999999999999999976
Q ss_pred --cccccce---e---cccccccEEEEEeCCeeC
Q psy845 652 --KKSGVNI---T---RPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --~~~~~TI---L---sTI~~aDrIlVLd~GrIV 677 (677)
..+++|| . +.++.||||++|++|+++
T Consensus 183 ~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~ 216 (243)
T 1mv5_A 183 DSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQIT 216 (243)
T ss_dssp HHHHTTSEEEEECCSHHHHHHCSEEEEEETTEEC
T ss_pred HHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEE
Confidence 1246673 2 234569999999999985
No 13
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.7e-40 Score=360.42 Aligned_cols=189 Identities=37% Similarity=0.672 Sum_probs=168.8
Q ss_pred CCCCCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHH
Q psy845 430 DWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET 509 (677)
Q Consensus 430 ~~~~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~ 509 (677)
.|+..+.|+++||+++|+++..++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.+||+|+.++
T Consensus 13 ~~~~~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~---- 87 (390)
T 3gd7_A 13 IWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSI---- 87 (390)
T ss_dssp CSSSSCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSS----
T ss_pred CCCCCCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcC----
Confidence 455667899999999997544579999999999999999999999999999999999998 999999999999887
Q ss_pred hhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhc
Q psy845 510 LRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYN 589 (677)
Q Consensus 510 ~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrEN 589 (677)
+.+.+|++++||+|++.+|++|++||
T Consensus 88 ------------------------------------------------------~~~~~rr~ig~v~Q~~~lf~~tv~en 113 (390)
T 3gd7_A 88 ------------------------------------------------------TLEQWRKAFGVIPQKVFIFSGTFRKN 113 (390)
T ss_dssp ------------------------------------------------------CHHHHHHTEEEESCCCCCCSEEHHHH
T ss_pred ------------------------------------------------------ChHHHhCCEEEEcCCcccCccCHHHH
Confidence 77788999999999999999999999
Q ss_pred cccCCCCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 590 LDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 590 I~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
+.++....+++++++++.+++.++..+.|.+++|.+ +|.+||||||||+||||||+++|+++
T Consensus 114 l~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~ 193 (390)
T 3gd7_A 114 LDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQI 193 (390)
T ss_dssp HCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHH
T ss_pred hhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHH
Confidence 987666778899999999999999999999999988 78999999999999999999999976
Q ss_pred -------cccccce------ecccccccEEEEEeCCeeC
Q psy845 652 -------KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
...++|+ +..+..||||+||++|+|+
T Consensus 194 l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~ 232 (390)
T 3gd7_A 194 IRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVR 232 (390)
T ss_dssp HHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEE
T ss_pred HHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEE
Confidence 1235562 3345669999999999984
No 14
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=6.9e-40 Score=337.06 Aligned_cols=184 Identities=29% Similarity=0.503 Sum_probs=161.3
Q ss_pred ccEEEEeeeEEeCCCC-CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 435 GTIKFKNVSLRYRDNW-PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 435 g~I~fknVsFsY~~~~-~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
+.|+++||+++|+++. .++|+|+||++++||++||+||||||||||+++|+|+++| +|+|.+||.++++.
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~-------- 86 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKY-------- 86 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGB--------
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhc--------
Confidence 4699999999997542 4699999999999999999999999999999999999987 89999999998776
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccC
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPF 593 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~ 593 (677)
+...+|++++||||++.+|++|++||+.++
T Consensus 87 --------------------------------------------------~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~ 116 (260)
T 2ghi_A 87 --------------------------------------------------NRNSIRSIIGIVPQDTILFNETIKYNILYG 116 (260)
T ss_dssp --------------------------------------------------CHHHHHTTEEEECSSCCCCSEEHHHHHHTT
T ss_pred --------------------------------------------------CHHHHhccEEEEcCCCcccccCHHHHHhcc
Confidence 566789999999999999999999999864
Q ss_pred C-CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh-------------------
Q psy845 594 G-RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK------------------- 651 (677)
Q Consensus 594 ~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL------------------- 651 (677)
. ..+++++.++++.+++.+++..+|+|+||.+ ++.+||||||||++||||++++|+++
T Consensus 117 ~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~ 196 (260)
T 2ghi_A 117 KLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQK 196 (260)
T ss_dssp CTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHH
Confidence 3 3456788899999999999999999999987 68899999999999999999999976
Q ss_pred ----cccccce------ecccccccEEEEEeCCeeC
Q psy845 652 ----KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
..+++|| ++.++.||||++|++|+++
T Consensus 197 ~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~ 232 (260)
T 2ghi_A 197 AVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIV 232 (260)
T ss_dssp HHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEE
T ss_pred HHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEE
Confidence 1235663 3345669999999999974
No 15
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.4e-39 Score=336.83 Aligned_cols=186 Identities=25% Similarity=0.415 Sum_probs=161.1
Q ss_pred CccEEEEeeeEEeCC-CCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhh
Q psy845 434 QGTIKFKNVSLRYRD-NWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS 512 (677)
Q Consensus 434 ~g~I~fknVsFsY~~-~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~ 512 (677)
.+.|+++||+++|++ +..++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~------- 86 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQY------- 86 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGB-------
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccC-------
Confidence 356999999999975 224699999999999999999999999999999999999999999999999998776
Q ss_pred hcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcccc
Q psy845 513 RLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDP 592 (677)
Q Consensus 513 ~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~ 592 (677)
+...+|++|+||||++.+|++|++||+.+
T Consensus 87 ---------------------------------------------------~~~~~~~~i~~v~Q~~~l~~~tv~enl~~ 115 (271)
T 2ixe_A 87 ---------------------------------------------------DHHYLHTQVAAVGQEPLLFGRSFRENIAY 115 (271)
T ss_dssp ---------------------------------------------------CHHHHHHHEEEECSSCCCCSSBHHHHHHT
T ss_pred ---------------------------------------------------CHHHHhccEEEEecCCccccccHHHHHhh
Confidence 55678899999999999999999999986
Q ss_pred CC-CCCh-HHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh-----------------
Q psy845 593 FG-RCHD-TELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK----------------- 651 (677)
Q Consensus 593 ~~-~~sd-eeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL----------------- 651 (677)
+. ...+ +++.++++..++.++++.+|+|+++.. .+.+||||||||++|||||+++|+++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i 195 (271)
T 2ixe_A 116 GLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRV 195 (271)
T ss_dssp TCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHH
T ss_pred hcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHH
Confidence 53 2344 677888899999999999999999887 68899999999999999999999976
Q ss_pred -----cc---cccce------ecccccccEEEEEeCCeeC
Q psy845 652 -----KK---SGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----~~---~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
.. .++|| ++.+..||||++|++|+++
T Consensus 196 ~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~ 235 (271)
T 2ixe_A 196 QRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVC 235 (271)
T ss_dssp HHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEE
T ss_pred HHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEE
Confidence 11 26673 2334569999999999974
No 16
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.1e-37 Score=380.95 Aligned_cols=433 Identities=17% Similarity=0.205 Sum_probs=333.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccc---c-h---hHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy845 180 VYLRSVFQNMWSMLFAFLMICFVFPWFAL---P-L---LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPW 252 (677)
Q Consensus 180 ~~~~~~~q~~~~~~f~~~~~~~~~~~f~~---~-~---~~~t~~~~~i~~v~~s~~l~~il~~~~~ll~~~v~l~~~~~~ 252 (677)
+...++..++...+|+|++.. ++.|||. | + .|+++|.+.+++.+ +..++.+++++..+++.+++++.++|.
T Consensus 775 ~~~~~~~~~lr~~l~~~ll~~-~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~-~~~l~~~~~~~~~~~~~~i~~~~~~~~ 852 (1284)
T 3g5u_A 775 KAGEILTKRLRYMVFKSMLRQ-DVSWFDDPKNTTGALTTRLANDAAQVKGAT-GSRLAVIFQNIANLGTGIIISLIYGWQ 852 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-CSHHHHSCSCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHcC-CHHHHcCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 333444455566899999986 6799974 3 3 55566666666654 346678888999999999888889998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy845 253 FALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSM 332 (677)
Q Consensus 253 lal~~l~i~~l~~~i~~~~~~~~~~~~r~~~~~~s~l~s~~~E~l~Gi~tIkaf~~e~~~~~~~~~~~~~~~~~~~~~~~ 332 (677)
++++++.+.|+..+......+..+...+......+.......|+++|+++||+|++|+++.++|.+..+...+.......
T Consensus 853 l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~ 932 (1284)
T 3g5u_A 853 LTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAH 932 (1284)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777777777666655555555544444444556677889999999999999999999999999988876655443333
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy845 333 AMRWLAVRIDVLAVI--AMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLV 410 (677)
Q Consensus 333 ~~~~~~~~l~~l~~l--~~~l~~g~~lv~~G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~~ 410 (677)
...........+..+ +.++++|.+++..|.++.+.+..++.+......++..+.....+++.+..+.+|+.++++. +
T Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~-~ 1011 (1284)
T 3g5u_A 933 VFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEK-T 1011 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHS-C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-C
Confidence 222222222222221 2334455556778888888888777777777777777777777788999999999999953 3
Q ss_pred CCCCCCCCCccccccccccCCCCCccEEEEeeeEEeCCC-CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC
Q psy845 411 PEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDN-WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE 489 (677)
Q Consensus 411 ~e~~~~~~~~~~~~~~~~~~~~~~g~I~fknVsFsY~~~-~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~ 489 (677)
++.+...+. ....++..|.|+++||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|+|+|+
T Consensus 1012 ~~~~~~~~~-------~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~ 1084 (1284)
T 3g5u_A 1012 PEIDSYSTQ-------GLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD 1084 (1284)
T ss_dssp CSSSSCCSS-------CCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC
T ss_pred Ccccccccc-------cccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 332211110 11112346789999999999864 3469999999999999999999999999999999999999
Q ss_pred CCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHh
Q psy845 490 LSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR 569 (677)
Q Consensus 490 p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR 569 (677)
|++|+|.+||+|+++++.+++|+++|+|||||.+|+++|+||-+
T Consensus 1085 p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~------------------------------------ 1128 (1284)
T 3g5u_A 1085 PMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIA------------------------------------ 1128 (1284)
T ss_dssp CSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHT------------------------------------
T ss_pred CCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHh------------------------------------
Confidence 99999999999999999999999999999999999998887721
Q ss_pred hhcccccccccccccchhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhcc
Q psy845 570 SRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRK 647 (677)
Q Consensus 570 ~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~ 647 (677)
+- .+....+++++++++++++++++++++|+||||.+ +|.+||||||||+|||||++++
T Consensus 1129 ----~~---------------~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~ 1189 (1284)
T 3g5u_A 1129 ----YG---------------DNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQ 1189 (1284)
T ss_dssp ----CC---------------CSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHC
T ss_pred ----cc---------------CCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcC
Confidence 10 01124578999999999999999999999999999 8999999999999999999999
Q ss_pred chhh-----------------------cccccce------ecccccccEEEEEeCCeeC
Q psy845 648 TKKK-----------------------KKSGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 648 p~IL-----------------------~~~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
|+++ ..+|+|+ ++++++||||+||++|+|+
T Consensus 1190 p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~ 1248 (1284)
T 3g5u_A 1190 PHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVK 1248 (1284)
T ss_dssp CSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEE
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEE
Confidence 9987 1356772 6788999999999999985
No 17
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=5.2e-37 Score=309.75 Aligned_cols=172 Identities=25% Similarity=0.381 Sum_probs=146.3
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
+.|+++||+++|+++..++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g--------------- 69 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--------------- 69 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS---------------
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC---------------
Confidence 46999999999974445799999999999999999999999999999999999999999999876
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG 594 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~ 594 (677)
+++||||++.+|++|++||+.++.
T Consensus 70 --------------------------------------------------------~i~~v~q~~~~~~~tv~enl~~~~ 93 (229)
T 2pze_A 70 --------------------------------------------------------RISFCSQFSWIMPGTIKENIIFGV 93 (229)
T ss_dssp --------------------------------------------------------CEEEECSSCCCCSBCHHHHHHTTS
T ss_pred --------------------------------------------------------EEEEEecCCcccCCCHHHHhhccC
Confidence 257888888888889999998754
Q ss_pred CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh------------------c--
Q psy845 595 RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK------------------K-- 652 (677)
Q Consensus 595 ~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL------------------~-- 652 (677)
...+.+..++++..++.+++..+|.+.++.+ ++.+||||||||++||||++++|+++ .
T Consensus 94 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l 173 (229)
T 2pze_A 94 SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESC 173 (229)
T ss_dssp CCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHC
T ss_pred CcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHH
Confidence 4445556778888899999999999999877 68899999999999999999999866 0
Q ss_pred ----ccccce---ec---ccccccEEEEEeCCeeC
Q psy845 653 ----KSGVNI---TR---PVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 653 ----~~~~TI---Ls---TI~~aDrIlVLd~GrIV 677 (677)
.+++|| .| .++.||||++|++|+++
T Consensus 174 ~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~ 208 (229)
T 2pze_A 174 VCKLMANKTRILVTSKMEHLKKADKILILHEGSSY 208 (229)
T ss_dssp CCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEE
T ss_pred HHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEE
Confidence 134563 22 34569999999999974
No 18
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=9.7e-37 Score=309.47 Aligned_cols=171 Identities=24% Similarity=0.368 Sum_probs=145.5
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.|+++||+++|+++..++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g---------------- 66 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG---------------- 66 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS----------------
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC----------------
Confidence 3899999999974334699999999999999999999999999999999999999999999886
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGR 595 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~ 595 (677)
+++||||++.+|+.|++||+.++..
T Consensus 67 -------------------------------------------------------~i~~v~Q~~~~~~~tv~enl~~~~~ 91 (237)
T 2cbz_A 67 -------------------------------------------------------SVAYVPQQAWIQNDSLRENILFGCQ 91 (237)
T ss_dssp -------------------------------------------------------CEEEECSSCCCCSEEHHHHHHTTSC
T ss_pred -------------------------------------------------------EEEEEcCCCcCCCcCHHHHhhCccc
Confidence 1577888888889999999987554
Q ss_pred CChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh-------------------cc-
Q psy845 596 CHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK-------------------KK- 653 (677)
Q Consensus 596 ~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL-------------------~~- 653 (677)
.++++..++++.+++.+.+..+|.|++|.+ ++.+||||||||++||||++++|+++ ..
T Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~ 171 (237)
T 2cbz_A 92 LEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVI 171 (237)
T ss_dssp CCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHH
Confidence 455667778888888888888999998877 78999999999999999999999865 11
Q ss_pred ------cccce------ecccccccEEEEEeCCeeC
Q psy845 654 ------SGVNI------TRPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 654 ------~~~TI------LsTI~~aDrIlVLd~GrIV 677 (677)
+++|+ ++.+..||||++|++|+++
T Consensus 172 ~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~ 207 (237)
T 2cbz_A 172 GPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKIS 207 (237)
T ss_dssp STTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEE
T ss_pred HHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEE
Confidence 25563 3345569999999999974
No 19
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1e-36 Score=308.88 Aligned_cols=178 Identities=25% Similarity=0.387 Sum_probs=139.0
Q ss_pred EEEEeeeEEeCCCC--CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 437 IKFKNVSLRYRDNW--PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 437 I~fknVsFsY~~~~--~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
|+++||+++|+++. .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+..
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~------ 75 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDD------ 75 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHH------
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHH------
Confidence 78999999997532 3599999999999999999999999999999999999999999999999999877211
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHH-hhhccccccccccccc-chhhcccc
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL-RSRLSVIPQDPVLFNG-TIRYNLDP 592 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~L-R~~I~~V~Qd~~LFsg-TIrENI~~ 592 (677)
+.... |+++|||+|++.+|.. |++||+.+
T Consensus 76 -------------------------------------------------~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~ 106 (235)
T 3tif_A 76 -------------------------------------------------ELTKIRRDKIGFVFQQFNLIPLLTALENVEL 106 (235)
T ss_dssp -------------------------------------------------HHHHHHHHHEEEECTTCCCCTTSCHHHHHHH
T ss_pred -------------------------------------------------HHHHHhhccEEEEecCCccCCCCcHHHHHHH
Confidence 22223 4579999999999976 99999953
Q ss_pred C------CCCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----------
Q psy845 593 F------GRCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------- 651 (677)
Q Consensus 593 ~------~~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------- 651 (677)
. +..+ .+++.++++..++.+... +. ...+||||||||++||||++++|+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------~~--~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~ 178 (235)
T 3tif_A 107 PLIFKYRGAMSGEERRKRALECLKMAELEERFA------NH--KPNQLSGGQQQRVAIARALANNPPIILADQPTWALDS 178 (235)
T ss_dssp HHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGT------TC--CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCH
T ss_pred HHHhhhccCCCHHHHHHHHHHHHHHCCCChhhh------hC--ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 1 1222 234566777777654321 11 46799999999999999999999976
Q ss_pred -------------ccc-ccce---e---cccccccEEEEEeCCeeC
Q psy845 652 -------------KKS-GVNI---T---RPVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------------~~~-~~TI---L---sTI~~aDrIlVLd~GrIV 677 (677)
..+ ++|| . ...+.||||++|++|+++
T Consensus 179 ~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~ 224 (235)
T 3tif_A 179 KTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVE 224 (235)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEE
Confidence 112 6773 2 234569999999999984
No 20
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.5e-36 Score=315.43 Aligned_cols=176 Identities=26% Similarity=0.441 Sum_probs=142.1
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-|+++||+++|+++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++..-
T Consensus 7 ~l~i~~ls~~y~~~-~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~---------- 75 (275)
T 3gfo_A 7 ILKVEELNYNYSDG-THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYS---------- 75 (275)
T ss_dssp EEEEEEEEEECTTS-CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCS----------
T ss_pred EEEEEEEEEEECCC-CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcc----------
Confidence 48999999999754 3599999999999999999999999999999999999999999999999998421
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhccccC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYNLDPF 593 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrENI~~~ 593 (677)
..+...+|+++|||||+| .+|+.|++||+.++
T Consensus 76 ----------------------------------------------~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~ 109 (275)
T 3gfo_A 76 ----------------------------------------------RKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFG 109 (275)
T ss_dssp ----------------------------------------------HHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHH
T ss_pred ----------------------------------------------cccHHHHhCcEEEEEcCcccccccCcHHHHHHHH
Confidence 005567889999999987 57889999999643
Q ss_pred C---CCCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 594 G---RCHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 594 ~---~~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
. ..+. +++.++++..++.++..+ ...+||||||||++|||||+.+|+++
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~---------~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~ 180 (275)
T 3gfo_A 110 AVNMKLPEDEIRKRVDNALKRTGIEHLKDK---------PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVS 180 (275)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHTTCGGGTTS---------BGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchhhcC---------CcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHH
Confidence 1 2222 346677888887654332 45789999999999999999999976
Q ss_pred ---------c-ccccce---e---cccc-cccEEEEEeCCeeC
Q psy845 652 ---------K-KSGVNI---T---RPVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~-~~~~TI---L---sTI~-~aDrIlVLd~GrIV 677 (677)
. .+|+|| . +.+. -||||++|++|+++
T Consensus 181 ~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~ 223 (275)
T 3gfo_A 181 EIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVI 223 (275)
T ss_dssp HHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEE
T ss_pred HHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 1 236773 2 3343 49999999999984
No 21
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2e-35 Score=300.16 Aligned_cols=176 Identities=23% Similarity=0.383 Sum_probs=134.9
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-++++||+++|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 6 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~---------- 73 (240)
T 1ji0_A 6 VLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNK---------- 73 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTC----------
T ss_pred eEEEEeEEEEECC--eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCC----------
Confidence 4899999999965 3699999999999999999999999999999999999999999999999998765
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHH-Hhhhccccccccccccc-chhhccccC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET-LRSRLSVIPQDPVLFNG-TIRYNLDPF 593 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-LR~~I~~V~Qd~~LFsg-TIrENI~~~ 593 (677)
+..+ .|++++||||++.+|.+ |++||+.++
T Consensus 74 ------------------------------------------------~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~ 105 (240)
T 1ji0_A 74 ------------------------------------------------PAHVINRMGIALVPEGRRIFPELTVYENLMMG 105 (240)
T ss_dssp ------------------------------------------------CHHHHHHTTEEEECSSCCCCTTSBHHHHHHGG
T ss_pred ------------------------------------------------CHHHHHhCCEEEEecCCccCCCCcHHHHHHHh
Confidence 3333 35569999999999876 999999764
Q ss_pred C--CCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh------------------
Q psy845 594 G--RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK------------------ 651 (677)
Q Consensus 594 ~--~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL------------------ 651 (677)
. ..+.++..+.++. .++.++ |++... ...+||||||||++||||++++|+++
T Consensus 106 ~~~~~~~~~~~~~~~~-----~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~ 179 (240)
T 1ji0_A 106 AYNRKDKEGIKRDLEW-----IFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVF 179 (240)
T ss_dssp GTTCCCSSHHHHHHHH-----HHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHH-----HHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHH
Confidence 2 1222232222221 222222 222222 57899999999999999999999976
Q ss_pred ------cccccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 ------KKSGVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------~~~~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
..+++|| .|.. +.||||++|++|+++
T Consensus 180 ~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 218 (240)
T 1ji0_A 180 EVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIV 218 (240)
T ss_dssp HHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 1246673 3332 349999999999974
No 22
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=7.3e-36 Score=321.52 Aligned_cols=179 Identities=28% Similarity=0.369 Sum_probs=144.1
Q ss_pred ccEEEEeeeEEeCCC--CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhh
Q psy845 435 GTIKFKNVSLRYRDN--WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS 512 (677)
Q Consensus 435 g~I~fknVsFsY~~~--~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~ 512 (677)
.-|+++||+++|+++ ..++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.+||+|+.+.+..
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~---- 98 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSES---- 98 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHH----
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHH----
Confidence 459999999999753 23699999999999999999999999999999999999999999999999999887211
Q ss_pred hcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccc
Q psy845 513 RLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLD 591 (677)
Q Consensus 513 ~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~ 591 (677)
....+|++||||+|++.+|. .|++||+.
T Consensus 99 ---------------------------------------------------~~~~~r~~Ig~v~Q~~~l~~~~TV~env~ 127 (366)
T 3tui_C 99 ---------------------------------------------------ELTKARRQIGMIFQHFNLLSSRTVFGNVA 127 (366)
T ss_dssp ---------------------------------------------------HHHHHHTTEEEECSSCCCCTTSCHHHHHH
T ss_pred ---------------------------------------------------HHHHHhCcEEEEeCCCccCCCCCHHHHHH
Confidence 34456889999999999985 59999996
Q ss_pred cCC---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------
Q psy845 592 PFG---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------- 651 (677)
Q Consensus 592 ~~~---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------- 651 (677)
+.. ..+ ++++.++++.+++.+...+ ...+||||||||++|||||+.+|+++
T Consensus 128 ~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~---------~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~ 198 (366)
T 3tui_C 128 LPLELDNTPKDEVKRRVTELLSLVGLGDKHDS---------YPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPAT 198 (366)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTC---------CTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCchHhcC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHH
Confidence 431 222 2346778888887665433 45799999999999999999999976
Q ss_pred -----------c-ccccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 -----------K-KSGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----------~-~~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
. ..|+|| .| .+. -||||+||++|+++
T Consensus 199 ~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv 243 (366)
T 3tui_C 199 TRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELI 243 (366)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 1 126673 33 333 49999999999985
No 23
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=8.7e-36 Score=299.89 Aligned_cols=176 Identities=25% Similarity=0.276 Sum_probs=139.7
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-++++|++++|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+..
T Consensus 4 ~l~~~~l~~~y~~--~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~------- 74 (224)
T 2pcj_A 4 ILRAENIKKVIRG--YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEK------- 74 (224)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHH-------
T ss_pred EEEEEeEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHH-------
Confidence 3899999999965 3699999999999999999999999999999999999999999999999998765110
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHh-hhcccccccccccc-cchhhccccC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR-SRLSVIPQDPVLFN-GTIRYNLDPF 593 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR-~~I~~V~Qd~~LFs-gTIrENI~~~ 593 (677)
+...+| ++++||||++.+|. .|++||+.+.
T Consensus 75 ------------------------------------------------~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~ 106 (224)
T 2pcj_A 75 ------------------------------------------------ELSLLRNRKLGFVFQFHYLIPELTALENVIVP 106 (224)
T ss_dssp ------------------------------------------------HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHH
T ss_pred ------------------------------------------------HHHHHHhCcEEEEecCcccCCCCCHHHHHHhH
Confidence 223444 78999999998885 5999999642
Q ss_pred C---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 594 G---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 594 ~---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
. ..+ ++++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 177 (224)
T 2pcj_A 107 MLKMGKPKKEAKERGEYLLSELGLGDKLSR---------KPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTK 177 (224)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHTTCTTCTTC---------CGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchhhhC---------ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHH
Confidence 1 111 2446677777777654322 45799999999999999999999976
Q ss_pred ---------cccccce---ec---ccccccEEEEEeCCeeC
Q psy845 652 ---------KKSGVNI---TR---PVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~~~~TI---Ls---TI~~aDrIlVLd~GrIV 677 (677)
..+++|| .| .++.||+|++|++|+++
T Consensus 178 ~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~ 218 (224)
T 2pcj_A 178 RVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVV 218 (224)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEE
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEE
Confidence 1236673 22 24569999999999974
No 24
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=2.7e-35 Score=304.21 Aligned_cols=173 Identities=20% Similarity=0.277 Sum_probs=142.9
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-++++|++++|++ .++|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.+||+++.+.
T Consensus 11 ~l~~~~l~~~~~~--~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~---------- 78 (266)
T 4g1u_C 11 LLEASHLHYHVQQ--QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSW---------- 78 (266)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTS----------
T ss_pred eEEEEeEEEEeCC--eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcC----------
Confidence 5899999999975 3699999999999999999999999999999999999999999999999999887
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc-cccchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-FNGTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L-FsgTIrENI~~~~ 594 (677)
+.+++|+.++|++|++.+ |+.|++||+.++.
T Consensus 79 ------------------------------------------------~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 110 (266)
T 4g1u_C 79 ------------------------------------------------QPKALARTRAVMRQYSELAFPFSVSEVIQMGR 110 (266)
T ss_dssp ------------------------------------------------CHHHHHHHEEEECSCCCCCSCCBHHHHHHGGG
T ss_pred ------------------------------------------------CHHHHhheEEEEecCCccCCCCCHHHHHHhhh
Confidence 666778889999999877 5789999996542
Q ss_pred -----CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhc------cchhh------------
Q psy845 595 -----RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLR------KTKKK------------ 651 (677)
Q Consensus 595 -----~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr------~p~IL------------ 651 (677)
+..++++.++++..++.+...+ ...+||||||||++|||||++ +|+++
T Consensus 111 ~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~ 181 (266)
T 4g1u_C 111 APYGGSQDRQALQQVMAQTDCLALAQR---------DYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLY 181 (266)
T ss_dssp TTSCSTTHHHHHHHHHHHTTCSTTTTS---------BGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHH
T ss_pred hhcCcHHHHHHHHHHHHHcCChhHhcC---------CcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHH
Confidence 1234567788888887654332 346899999999999999999 99876
Q ss_pred ------------ccc-ccce---ecc---cc-cccEEEEEeCCeeC
Q psy845 652 ------------KKS-GVNI---TRP---VT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~-~~TI---LsT---I~-~aDrIlVLd~GrIV 677 (677)
..+ ++|| .|. +. .||||++|++|+++
T Consensus 182 ~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~ 227 (266)
T 4g1u_C 182 HQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLV 227 (266)
T ss_dssp HHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEE
Confidence 112 3463 333 22 49999999999984
No 25
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=3.6e-35 Score=301.09 Aligned_cols=174 Identities=25% Similarity=0.304 Sum_probs=138.1
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-++++||+++|++ .++|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.+||.++.+.+
T Consensus 7 ~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~--------- 75 (257)
T 1g6h_A 7 ILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKE--------- 75 (257)
T ss_dssp EEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCC---------
T ss_pred EEEEeeeEEEECC--EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC---------
Confidence 4899999999965 36999999999999999999999999999999999999999999999999986651
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~ 594 (677)
+.+..|++++||||++.+|. .|++||+.++.
T Consensus 76 ------------------------------------------------~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~ 107 (257)
T 1g6h_A 76 ------------------------------------------------PAELYHYGIVRTFQTPQPLKEMTVLENLLIGE 107 (257)
T ss_dssp ------------------------------------------------HHHHHHHTEEECCCCCGGGGGSBHHHHHHGGG
T ss_pred ------------------------------------------------HHHHHhCCEEEEccCCccCCCCcHHHHHHHHH
Confidence 23456778999999998885 69999996532
Q ss_pred C----------------CC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---
Q psy845 595 R----------------CH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--- 651 (677)
Q Consensus 595 ~----------------~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--- 651 (677)
. .+ .+++.++++..++.+...+ ...+||||||||++||||++++|+++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LSgGqkQrv~iAraL~~~p~lllLD 178 (257)
T 1g6h_A 108 ICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDR---------KAGELSGGQMKLVEIGRALMTNPKMIVMD 178 (257)
T ss_dssp TSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTS---------BGGGSCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred hhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCC---------CchhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 1 11 1235566666666543222 46799999999999999999999976
Q ss_pred ---------------------cccccce---ec---cc-ccccEEEEEeCCeeC
Q psy845 652 ---------------------KKSGVNI---TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------------------~~~~~TI---Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+ +.||||++|++|+++
T Consensus 179 EPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (257)
T 1g6h_A 179 EPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII 232 (257)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEE
T ss_pred CCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 1236673 33 23 359999999999974
No 26
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2.3e-35 Score=304.45 Aligned_cols=175 Identities=27% Similarity=0.414 Sum_probs=140.6
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-|+++||+++|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++. .+
T Consensus 24 ~l~i~~l~~~y~~--~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~-~~--------- 91 (263)
T 2olj_A 24 MIDVHQLKKSFGS--LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLK-AK--------- 91 (263)
T ss_dssp SEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESS-ST---------
T ss_pred eEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECC-Cc---------
Confidence 4999999999964 36999999999999999999999999999999999999999999999999875 20
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-chhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TIrENI~~~~ 594 (677)
..+...+|++++||||++.+|.. |++||+.++.
T Consensus 92 ----------------------------------------------~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~ 125 (263)
T 2olj_A 92 ----------------------------------------------DTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAP 125 (263)
T ss_dssp ----------------------------------------------TCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHH
T ss_pred ----------------------------------------------cccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHH
Confidence 00445678899999999999865 9999996521
Q ss_pred ----CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 595 ----RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 595 ----~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
..+ ++++.++++..++.++..+ ...+||||||||++||||++++|+++
T Consensus 126 ~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~---------~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~ 196 (263)
T 2olj_A 126 MKVRKWPREKAEAKAMELLDKVGLKDKAHA---------YPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVG 196 (263)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHTTCGGGTTS---------CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCCchHhcC---------ChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHH
Confidence 222 2346778888887665322 45789999999999999999999976
Q ss_pred ---------cccccce---ecc---cc-cccEEEEEeCCeeC
Q psy845 652 ---------KKSGVNI---TRP---VT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~~~~TI---LsT---I~-~aDrIlVLd~GrIV 677 (677)
..+++|| .|. +. -||||++|++|+++
T Consensus 197 ~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 238 (263)
T 2olj_A 197 EVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYII 238 (263)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 1236673 332 33 49999999999974
No 27
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.3e-35 Score=303.27 Aligned_cols=174 Identities=24% Similarity=0.382 Sum_probs=140.9
Q ss_pred CccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 434 ~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
-+.|+++||+++|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 13 ~~~l~i~~l~~~y~~--~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~-------- 82 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-------- 82 (256)
T ss_dssp -CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC--------
T ss_pred CCeEEEEEEEEEECC--EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcc--------
Confidence 357999999999964 3699999999999999999999999999999999999999999999999987542
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-chhhcccc
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIRYNLDP 592 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TIrENI~~ 592 (677)
...+|++++||||++.+|.+ |++||+.+
T Consensus 83 ---------------------------------------------------~~~~~~~i~~v~q~~~l~~~ltv~enl~~ 111 (256)
T 1vpl_A 83 ---------------------------------------------------PHEVRKLISYLPEEAGAYRNMQGIEYLRF 111 (256)
T ss_dssp ---------------------------------------------------HHHHHTTEEEECTTCCCCTTSBHHHHHHH
T ss_pred ---------------------------------------------------HHHHhhcEEEEcCCCCCCCCCcHHHHHHH
Confidence 23567889999999988865 99999965
Q ss_pred CC---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------------
Q psy845 593 FG---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------------- 651 (677)
Q Consensus 593 ~~---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------------- 651 (677)
+. ..+ ++++.++++..++.++..+ ...+||||||||++||||++++|+++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~---------~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~ 182 (256)
T 1vpl_A 112 VAGFYASSSSEIEEMVERATEIAGLGEKIKD---------RVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNA 182 (256)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHCCGGGGGS---------BGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHH
T ss_pred HHHHcCCChHHHHHHHHHHHHHCCCchHhcC---------ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHH
Confidence 31 122 2456778888888765433 45789999999999999999999976
Q ss_pred ----------cccccce---ec---cccc-ccEEEEEeCCeeC
Q psy845 652 ----------KKSGVNI---TR---PVTS-CDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----------~~~~~TI---Ls---TI~~-aDrIlVLd~GrIV 677 (677)
..+++|| .| .+.. ||||++|++|+++
T Consensus 183 ~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~ 225 (256)
T 1vpl_A 183 REVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIV 225 (256)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEE
T ss_pred HHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEE
Confidence 1236673 22 2344 9999999999974
No 28
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-34 Score=299.17 Aligned_cols=171 Identities=27% Similarity=0.315 Sum_probs=138.9
Q ss_pred EEEEeeeEEeCCCC---CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 437 IKFKNVSLRYRDNW---PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 437 I~fknVsFsY~~~~---~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
++++||+++|+.+. .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~--------- 73 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKG--------- 73 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCH---------
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECch---------
Confidence 78999999997222 369999999999999999999999999999999999999999999999988632
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc--cccccchhhccc
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNGTIRYNLD 591 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~--~LFsgTIrENI~ 591 (677)
. .+|++++||||+| .+++.|++||+.
T Consensus 74 --------------------------------------------------~--~~~~~i~~v~q~~~~~~~~~tv~enl~ 101 (266)
T 2yz2_A 74 --------------------------------------------------Y--EIRRNIGIAFQYPEDQFFAERVFDEVA 101 (266)
T ss_dssp --------------------------------------------------H--HHGGGEEEECSSGGGGCCCSSHHHHHH
T ss_pred --------------------------------------------------H--HhhhhEEEEeccchhhcCCCcHHHHHH
Confidence 1 5677888899986 567889999997
Q ss_pred cCCC------CChHHHHHHHHHccch--hhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------
Q psy845 592 PFGR------CHDTELWDALEKSHLK--SKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------ 651 (677)
Q Consensus 592 ~~~~------~sdeeI~~Al~~a~l~--efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------ 651 (677)
++.. ..++++.++++..++. ++..+. ..+||||||||++|||||+++|+++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---------~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~ 172 (266)
T 2yz2_A 102 FAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRV---------PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDRE 172 (266)
T ss_dssp HTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCC---------GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCC---------hhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHH
Confidence 5321 1235688899999987 665443 3689999999999999999999976
Q ss_pred ------------cccccce---ec---ccc-cccEEEEEeCCeeC
Q psy845 652 ------------KKSGVNI---TR---PVT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ------------~~~~~TI---Ls---TI~-~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+. -||||++|++|+++
T Consensus 173 ~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~ 217 (266)
T 2yz2_A 173 GKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKV 217 (266)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 1236673 22 344 39999999999974
No 29
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=6.1e-35 Score=313.78 Aligned_cols=175 Identities=26% Similarity=0.335 Sum_probs=140.4
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.|+++||+++|++ ..+|+|+||++++||.+||+||||||||||+|+|+|+.+|++|+|.+||.++.+.+
T Consensus 4 ~l~i~~ls~~y~~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~--------- 72 (359)
T 3fvq_A 4 ALHIGHLSKSFQN--TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKN--------- 72 (359)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSS---------
T ss_pred EEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccc---------
Confidence 4899999999965 36999999999999999999999999999999999999999999999999984320
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~ 594 (677)
.+....|+++|||+|++.+|. .|++||+.++.
T Consensus 73 -----------------------------------------------~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l 105 (359)
T 3fvq_A 73 -----------------------------------------------TNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGL 105 (359)
T ss_dssp -----------------------------------------------CBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTS
T ss_pred -----------------------------------------------cccchhhCCEEEEeCCCcCCCCCCHHHHHHHHH
Confidence 012234678999999999985 69999997642
Q ss_pred C---CC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 R---CH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ~---~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
. .+ ++++.++++..++.++..+ ...+||||||||++|||||+++|+++
T Consensus 106 ~~~~~~~~~~~~~v~~~l~~~gL~~~~~r---------~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~ 176 (359)
T 3fvq_A 106 GNGKGRTAQERQRIEAMLELTGISELAGR---------YPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQ 176 (359)
T ss_dssp TTSSCCSHHHHHHHHHHHHHHTCGGGTTS---------CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHH
T ss_pred HHcCCChHHHHHHHHHHHHHcCCchHhcC---------ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 1 11 2457778888888766544 34689999999999999999999976
Q ss_pred ---------cccccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 ---------KKSGVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~~~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
...++|+ .|.. +-||||+||++|+|+
T Consensus 177 l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~ 218 (359)
T 3fvq_A 177 IREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRIL 218 (359)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEE
Confidence 1235663 3332 349999999999984
No 30
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1e-34 Score=298.84 Aligned_cols=176 Identities=24% Similarity=0.323 Sum_probs=141.4
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccc----------c
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS----------V 505 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~----------l 505 (677)
-++++||+++|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.. .
T Consensus 6 ~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 6 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence 4899999999964 369999999999999999999999999999999999999999999999998852 2
Q ss_pred cHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-
Q psy845 506 ELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG- 584 (677)
Q Consensus 506 ~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg- 584 (677)
+ ..+...+|++++||||++.+|..
T Consensus 84 ~-------------------------------------------------------~~~~~~~~~~i~~v~Q~~~l~~~l 108 (262)
T 1b0u_A 84 D-------------------------------------------------------KNQLRLLRTRLTMVFQHFNLWSHM 108 (262)
T ss_dssp C-------------------------------------------------------HHHHHHHHHHEEEECSSCCCCTTS
T ss_pred C-------------------------------------------------------hhhHHHHhcceEEEecCcccCCCC
Confidence 0 00234578899999999998865
Q ss_pred chhhccccCC----CCC----hHHHHHHHHHccchhh-HhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----
Q psy845 585 TIRYNLDPFG----RCH----DTELWDALEKSHLKSK-VVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---- 651 (677)
Q Consensus 585 TIrENI~~~~----~~s----deeI~~Al~~a~l~ef-I~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---- 651 (677)
|++||+.++. ..+ ++++.++++..++.++ ..+ ...+||||||||++|||||+++|+++
T Consensus 109 tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~---------~~~~LSgGq~qRv~lAraL~~~p~lllLDE 179 (262)
T 1b0u_A 109 TVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGK---------YPVHLSGGQQQRVSIARALAMEPDVLLFDE 179 (262)
T ss_dssp CHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTS---------CGGGSCHHHHHHHHHHHHHHTCCSEEEEES
T ss_pred cHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcC---------CcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9999996521 122 2456778888888776 433 35689999999999999999999976
Q ss_pred --------------------cccccce---ecc---cc-cccEEEEEeCCeeC
Q psy845 652 --------------------KKSGVNI---TRP---VT-SCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------------------~~~~~TI---LsT---I~-~aDrIlVLd~GrIV 677 (677)
..+++|| .|. +. -||||++|++|+++
T Consensus 180 Pts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (262)
T 1b0u_A 180 PTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 232 (262)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred CCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 1236673 332 33 49999999999974
No 31
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.2e-34 Score=301.41 Aligned_cols=173 Identities=22% Similarity=0.289 Sum_probs=138.1
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecc--cccHHHhhhh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA--SVELETLRSR 513 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~--~l~~~~~~~~ 513 (677)
-++++||+++|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++. +.
T Consensus 21 ~l~~~~l~~~y~~--~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~-------- 90 (279)
T 2ihy_A 21 LIQLDQIGRMKQG--KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGY-------- 90 (279)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---C--------
T ss_pred eEEEEeEEEEECC--EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccC--------
Confidence 5999999999965 36999999999999999999999999999999999999999999999999886 44
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc-ccc--chhhcc
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-FNG--TIRYNL 590 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L-Fsg--TIrENI 590 (677)
+..++|++++||||++.+ |.. |++||+
T Consensus 91 --------------------------------------------------~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl 120 (279)
T 2ihy_A 91 --------------------------------------------------SAETVRQHIGFVSHSLLEKFQEGERVIDVV 120 (279)
T ss_dssp --------------------------------------------------CHHHHHTTEEEECHHHHTTSCTTSBHHHHH
T ss_pred --------------------------------------------------CHHHHcCcEEEEEcCcccccCCCCCHHHHH
Confidence 455678889999999875 554 999999
Q ss_pred ccCCC--------CC---hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------
Q psy845 591 DPFGR--------CH---DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------- 651 (677)
Q Consensus 591 ~~~~~--------~s---deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------- 651 (677)
.++.. .. .+++.++++..++.++..+ ...+||||||||++||||++++|+++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~ 191 (279)
T 2ihy_A 121 ISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQ---------YIGYLSTGEKQRVMIARALMGQPQVLILDEPAAG 191 (279)
T ss_dssp HTTC---------CCHHHHHHHHHHHHHTTCGGGTTS---------BGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTT
T ss_pred HhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcC---------ChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccc
Confidence 75321 12 2346677777777654322 45789999999999999999999976
Q ss_pred ----------------cccccce-----ec---cc-ccccEEEEEeCCeeC
Q psy845 652 ----------------KKSGVNI-----TR---PV-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----------------~~~~~TI-----Ls---TI-~~aDrIlVLd~GrIV 677 (677)
..+++|| .| .+ +.||||++|++|+++
T Consensus 192 LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~ 242 (279)
T 2ihy_A 192 LDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSI 242 (279)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEE
T ss_pred cCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 1124443 22 23 349999999999974
No 32
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.2e-34 Score=313.53 Aligned_cols=171 Identities=22% Similarity=0.330 Sum_probs=139.2
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.|+++||+++|++ ..+|+|+||++++||.+||+||||||||||+|+|+|+++|++|+|.+||.++.+.
T Consensus 3 ~l~~~~l~~~yg~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~---------- 70 (381)
T 3rlf_A 3 SVQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDT---------- 70 (381)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTC----------
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCC----------
Confidence 4899999999965 3699999999999999999999999999999999999999999999999998776
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~ 594 (677)
+.. +++||||+|++.||. .|++||+.++.
T Consensus 71 ------------------------------------------------~~~--~r~ig~VfQ~~~l~p~ltV~eni~~~~ 100 (381)
T 3rlf_A 71 ------------------------------------------------PPA--ERGVGMVFQSYALYPHLSVAENMSFGL 100 (381)
T ss_dssp ------------------------------------------------CGG--GSCEEEECTTCCCCTTSCHHHHHTHHH
T ss_pred ------------------------------------------------CHH--HCCEEEEecCCcCCCCCCHHHHHHHHH
Confidence 222 367889999988885 59999997531
Q ss_pred ---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 ---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
..+ ++++.++++..++.++..+ ...+||||||||++|||||+++|+++
T Consensus 101 ~~~~~~~~~~~~~v~~~l~~~~L~~~~~r---------~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~ 171 (381)
T 3rlf_A 101 KLAGAKKEVINQRVNQVAEVLQLAHLLDR---------KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQ 171 (381)
T ss_dssp HHTTCCHHHHHHHHHHHHHHTTCGGGTTC---------CGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCchhhcC---------ChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHH
Confidence 222 2456778888888765443 34689999999999999999999976
Q ss_pred --------cc-cccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 --------KK-SGVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~-~~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
.. .|+|+ .|.. +-||||+||++|+++
T Consensus 172 l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~ 213 (381)
T 3rlf_A 172 MRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVA 213 (381)
T ss_dssp HHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 11 25662 3332 349999999999984
No 33
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=3.3e-34 Score=308.18 Aligned_cols=171 Identities=23% Similarity=0.347 Sum_probs=140.2
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.++++|++++|++ ..+|+|+||++++||.+||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~---------- 70 (359)
T 2yyz_A 3 SIRVVNLKKYFGK--VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDI---------- 70 (359)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS----------
T ss_pred EEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCC----------
Confidence 3899999999964 3699999999999999999999999999999999999999999999999998766
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~ 594 (677)
+. .|+++|||+|++.+|. .|++||+.++.
T Consensus 71 ------------------------------------------------~~--~~r~ig~v~Q~~~l~~~ltv~eni~~~~ 100 (359)
T 2yyz_A 71 ------------------------------------------------PP--KYREVGMVFQNYALYPHMTVFENIAFPL 100 (359)
T ss_dssp ------------------------------------------------CG--GGTTEEEECSSCCCCTTSCHHHHHHGGG
T ss_pred ------------------------------------------------Ch--hhCcEEEEecCcccCCCCCHHHHHHHHH
Confidence 22 2567899999988885 59999997642
Q ss_pred C---CC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 R---CH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ~---~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
+ .+ ++++.++++..++.++..+. ..+||||||||++|||||+++|+++
T Consensus 101 ~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~---------~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~ 171 (359)
T 2yyz_A 101 RARRISKDEVEKRVVEIARKLLIDNLLDRK---------PTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMI 171 (359)
T ss_dssp SSSCSHHHHTTHHHHHHHHHTTCGGGTTSC---------GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCchHhcCC---------hhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHH
Confidence 2 11 34678889999887765443 4689999999999999999999976
Q ss_pred --------cc-cccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 --------KK-SGVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~-~~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
.. .+.|+ .|.. .-||||+||++|+++
T Consensus 172 l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~ 213 (359)
T 2yyz_A 172 MRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLV 213 (359)
T ss_dssp HHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 11 25662 3332 349999999999974
No 34
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=4.5e-34 Score=292.57 Aligned_cols=167 Identities=22% Similarity=0.257 Sum_probs=140.7
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++||+++ ++|+|+||++++||++||+||||||||||+++|+|+++|+ |+|.+||.++.+.
T Consensus 5 l~~~~l~~~------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~----------- 66 (249)
T 2qi9_C 5 MQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAW----------- 66 (249)
T ss_dssp EEEEEEEET------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGS-----------
T ss_pred EEEEceEEE------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcC-----------
Confidence 789999986 4999999999999999999999999999999999999999 9999999998776
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFGR 595 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~~ 595 (677)
+..++|++++||||++.+|. .|++||+.++..
T Consensus 67 -----------------------------------------------~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 99 (249)
T 2qi9_C 67 -----------------------------------------------SATKLALHRAYLSQQQTPPFATPVWHYLTLHQH 99 (249)
T ss_dssp -----------------------------------------------CHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCS
T ss_pred -----------------------------------------------CHHHHhceEEEECCCCccCCCCcHHHHHHHhhc
Confidence 56678889999999999886 499999976431
Q ss_pred --CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccch-------hh---------------
Q psy845 596 --CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTK-------KK--------------- 651 (677)
Q Consensus 596 --~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~-------IL--------------- 651 (677)
.+++++.++++..++.++..+ ...+||||||||++||||++++|+ ++
T Consensus 100 ~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~ 170 (249)
T 2qi9_C 100 DKTRTELLNDVAGALALDDKLGR---------STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQS 170 (249)
T ss_dssp STTCHHHHHHHHHHTTCGGGTTS---------BGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHH
T ss_pred cCCcHHHHHHHHHHcCChhHhcC---------ChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHH
Confidence 236678889999988765432 467999999999999999999999 87
Q ss_pred ---------cccccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 ---------KKSGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
..+++|| .|. + +.||||++|++|+++
T Consensus 171 ~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~ 212 (249)
T 2qi9_C 171 ALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKML 212 (249)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 1236673 332 3 359999999999974
No 35
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=3.9e-34 Score=292.32 Aligned_cols=172 Identities=24% Similarity=0.235 Sum_probs=128.8
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcC--CCCCccEEEECCEecccccHHHhhhhc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRL--VELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~--y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
++++||+++|++ .++|+|+||++++||++||+||||||||||+++|+|+ ++|++|+|.+||.++.+.
T Consensus 4 l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~--------- 72 (250)
T 2d2e_A 4 LEIRDLWASIDG--ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILEL--------- 72 (250)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTS---------
T ss_pred EEEEeEEEEECC--EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCC---------
Confidence 789999999964 3699999999999999999999999999999999999 899999999999998776
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHH-hhhccccccccccccc-chhhcccc
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL-RSRLSVIPQDPVLFNG-TIRYNLDP 592 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~L-R~~I~~V~Qd~~LFsg-TIrENI~~ 592 (677)
+..+. |+.++||+|++.+|.+ |++||+.+
T Consensus 73 -------------------------------------------------~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 103 (250)
T 2d2e_A 73 -------------------------------------------------SPDERARKGLFLAFQYPVEVPGVTIANFLRL 103 (250)
T ss_dssp -------------------------------------------------CHHHHHHTTBCCCCCCCC-CCSCBHHHHHHH
T ss_pred -------------------------------------------------CHHHHHhCcEEEeccCCccccCCCHHHHHHH
Confidence 33333 4568899999988864 89999854
Q ss_pred CC----C--CC----hHHHHHHHHHccch-hhHhhhhcccCCCCCCCC-CChHHHHHHHHHHHHhccchhh---------
Q psy845 593 FG----R--CH----DTELWDALEKSHLK-SKVVTMRSKLDSDVQGDQ-LSLGEKQLLCLARALLRKTKKK--------- 651 (677)
Q Consensus 593 ~~----~--~s----deeI~~Al~~a~l~-efI~~LP~GldT~v~G~~-LSGGQRQRIaIARALLr~p~IL--------- 651 (677)
.. . .. ++++.++++..++. +...+ ...+ ||||||||++|||||+++|+++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~---------~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~L 174 (250)
T 2d2e_A 104 ALQAKLGREVGVAEFWTKVKKALELLDWDESYLSR---------YLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGL 174 (250)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGS---------BTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTT
T ss_pred HHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcC---------CcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCC
Confidence 21 1 11 23456667776663 33221 2345 9999999999999999999976
Q ss_pred ---------------cccccce---ec---cccc--ccEEEEEeCCeeC
Q psy845 652 ---------------KKSGVNI---TR---PVTS--CDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------------~~~~~TI---Ls---TI~~--aDrIlVLd~GrIV 677 (677)
..+++|| .| .+.. ||||++|++|+++
T Consensus 175 D~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~ 223 (250)
T 2d2e_A 175 DIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVV 223 (250)
T ss_dssp CHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEE
Confidence 1235663 33 3443 5999999999974
No 36
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=4.2e-34 Score=299.04 Aligned_cols=168 Identities=27% Similarity=0.421 Sum_probs=130.1
Q ss_pred CccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 434 ~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
.+.++++||+++| .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||
T Consensus 38 ~~~l~~~~l~~~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------- 99 (290)
T 2bbs_A 38 DDSLSFSNFSLLG----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------- 99 (290)
T ss_dssp ------------C----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS--------------
T ss_pred CceEEEEEEEEcC----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC--------------
Confidence 3569999999864 3599999999999999999999999999999999999999999998875
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccC
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPF 593 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~ 593 (677)
+++||||++.+|++|++||+. +
T Consensus 100 ---------------------------------------------------------~i~~v~Q~~~l~~~tv~enl~-~ 121 (290)
T 2bbs_A 100 ---------------------------------------------------------RISFCSQNSWIMPGTIKENII-G 121 (290)
T ss_dssp ---------------------------------------------------------CEEEECSSCCCCSSBHHHHHH-T
T ss_pred ---------------------------------------------------------EEEEEeCCCccCcccHHHHhh-C
Confidence 257888888888889999997 4
Q ss_pred CCCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchhh------------------c-
Q psy845 594 GRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKKK------------------K- 652 (677)
Q Consensus 594 ~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~IL------------------~- 652 (677)
....+.+..++++..++.+.+..+|+++++.+ ++.+||||||||++||||++++|+++ .
T Consensus 122 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ 201 (290)
T 2bbs_A 122 VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 201 (290)
T ss_dssp TCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred cccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHH
Confidence 33344556678888899999999999999888 68899999999999999999999866 1
Q ss_pred -----ccccce---ec---ccccccEEEEEeCCeeC
Q psy845 653 -----KSGVNI---TR---PVTSCDKVLVMDNGQAL 677 (677)
Q Consensus 653 -----~~~~TI---Ls---TI~~aDrIlVLd~GrIV 677 (677)
.+++|| .| .++.||||++|++|+++
T Consensus 202 ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~ 237 (290)
T 2bbs_A 202 CVCKLMANKTRILVTSKMEHLKKADKILILHEGSSY 237 (290)
T ss_dssp CCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEE
T ss_pred HHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEE
Confidence 125563 22 34569999999999974
No 37
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=2.5e-34 Score=308.49 Aligned_cols=175 Identities=25% Similarity=0.302 Sum_probs=139.8
Q ss_pred EEEEeeeEEeCCCCCc--cccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 437 IKFKNVSLRYRDNWPL--VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 437 I~fknVsFsY~~~~~~--VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
++++||+++|++ .. +|+|+||++++||.+||+||||||||||+|+|+|+++|++|+|.+||.++.+.+
T Consensus 4 l~i~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-------- 73 (353)
T 1oxx_K 4 IIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNG-------- 73 (353)
T ss_dssp EEEEEEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETT--------
T ss_pred EEEEeEEEEECC--EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccc--------
Confidence 899999999964 35 999999999999999999999999999999999999999999999999986520
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~ 593 (677)
+ .+....|+++|||+|++.+|. .|++||+.++
T Consensus 74 ------------------------------------------~-----~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~ 106 (353)
T 1oxx_K 74 ------------------------------------------K-----LIVPPEDRKIGMVFQTWALYPNLTAFENIAFP 106 (353)
T ss_dssp ------------------------------------------E-----ESSCGGGSCEEEEETTSCCCTTSCHHHHHHGG
T ss_pred ------------------------------------------c-----ccCChhhCCEEEEeCCCccCCCCCHHHHHHHH
Confidence 0 011224678999999999986 5999999764
Q ss_pred CC---CC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 594 GR---CH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 594 ~~---~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
.+ .+ ++++.++++..++.++..+. ..+||||||||++|||||+++|+++
T Consensus 107 ~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~---------~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~ 177 (353)
T 1oxx_K 107 LTNMKMSKEEIRKRVEEVAKILDIHHVLNHF---------PRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRD 177 (353)
T ss_dssp GTTSSCCHHHHHHHHHHHHHHTTCGGGTTSC---------GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchHhcCC---------hhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHH
Confidence 22 22 34577888888887765443 4689999999999999999999976
Q ss_pred ---------cc-cccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 ---------KK-SGVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~-~~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
.. .++|+ .|.. +-||||+||++|+++
T Consensus 178 ~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~ 220 (353)
T 1oxx_K 178 SARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLV 220 (353)
T ss_dssp HHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 01 25662 3332 349999999999974
No 38
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.6e-34 Score=308.17 Aligned_cols=171 Identities=25% Similarity=0.393 Sum_probs=138.9
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.|+++|++++|++ .++|+|+||++++||.+||+||||||||||+|+|+|+++|++|+|.+||.++.+.
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~---------- 70 (362)
T 2it1_A 3 EIKLENIVKKFGN--FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTEL---------- 70 (362)
T ss_dssp CEEEEEEEEESSS--SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS----------
T ss_pred EEEEEeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcC----------
Confidence 3899999999964 3699999999999999999999999999999999999999999999999998766
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~ 594 (677)
+. .++++|||+|++.+|. .|++||+.++.
T Consensus 71 ------------------------------------------------~~--~~r~ig~v~Q~~~l~~~ltv~eni~~~~ 100 (362)
T 2it1_A 71 ------------------------------------------------PP--KDRNVGLVFQNWALYPHMTVYKNIAFPL 100 (362)
T ss_dssp ------------------------------------------------CG--GGTTEEEECTTCCCCTTSCHHHHHHHHH
T ss_pred ------------------------------------------------CH--hHCcEEEEecCcccCCCCCHHHHHHHHH
Confidence 22 2467899999988885 59999997531
Q ss_pred ---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 ---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
..+ ++++.++++..++.++..+ ...+||||||||++|||||+++|+++
T Consensus 101 ~~~~~~~~~~~~~v~~~l~~~~L~~~~~r---------~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~ 171 (362)
T 2it1_A 101 ELRKAPREEIDKKVREVAKMLHIDKLLNR---------YPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE 171 (362)
T ss_dssp HHTTCCHHHHHHHHHHHHHHTTCTTCTTC---------CGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCchHhhC---------ChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHH
Confidence 122 2457778888888766444 34689999999999999999999976
Q ss_pred --------cc-cccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 --------KK-SGVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~-~~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
.. .++|+ .|.. +-||||+||++|+++
T Consensus 172 l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~ 213 (362)
T 2it1_A 172 VRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEIL 213 (362)
T ss_dssp HHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 11 25662 3332 349999999999984
No 39
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=4.3e-34 Score=306.82 Aligned_cols=173 Identities=27% Similarity=0.371 Sum_probs=140.0
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
..|+++|++++|+++ .++|+|+||++++||.+||+||||||||||+|+|+|+++|++|+|.+||.++.+.
T Consensus 13 ~~l~~~~l~~~y~g~-~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~--------- 82 (355)
T 1z47_A 13 MTIEFVGVEKIYPGG-ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDL--------- 82 (355)
T ss_dssp EEEEEEEEEECCTTS-TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTC---------
T ss_pred ceEEEEEEEEEEcCC-CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcC---------
Confidence 469999999999422 3699999999999999999999999999999999999999999999999998665
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~ 593 (677)
+. .|++++||+|++.+|. .|++||+.++
T Consensus 83 -------------------------------------------------~~--~~r~ig~v~Q~~~l~~~ltv~eni~~~ 111 (355)
T 1z47_A 83 -------------------------------------------------PP--QKRNVGLVFQNYALFQHMTVYDNVSFG 111 (355)
T ss_dssp -------------------------------------------------CG--GGSSEEEECGGGCCCTTSCHHHHHHHH
T ss_pred -------------------------------------------------Ch--hhCcEEEEecCcccCCCCCHHHHHHHH
Confidence 22 3578899999988885 5999999753
Q ss_pred C---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------------
Q psy845 594 G---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------------- 651 (677)
Q Consensus 594 ~---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------------- 651 (677)
. ..+ ++++.++++..++.++..+. ..+||||||||++|||||+++|+++
T Consensus 112 l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~---------~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~ 182 (355)
T 1z47_A 112 LREKRVPKDEMDARVRELLRFMRLESYANRF---------PHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRR 182 (355)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHTTCGGGTTSC---------GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCChhHhcCC---------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 1 122 34577888888887765443 4689999999999999999999976
Q ss_pred ---------cc-cccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 ---------KK-SGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ---------~~-~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
.. .++|+ .|. + .-||||+||++|+++
T Consensus 183 ~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~ 225 (355)
T 1z47_A 183 ELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVE 225 (355)
T ss_dssp HHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 11 25663 332 2 349999999999974
No 40
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=9.9e-34 Score=288.41 Aligned_cols=167 Identities=28% Similarity=0.364 Sum_probs=134.7
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++||+++|++ +|+|+||++++ |++||+||||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 2 l~~~~l~~~y~~----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----------- 65 (240)
T 2onk_A 2 FLKVRAEKRLGN----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL----------- 65 (240)
T ss_dssp CEEEEEEEEETT----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS-----------
T ss_pred EEEEEEEEEeCC----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC-----------
Confidence 678999999952 59999999999 99999999999999999999999999999999999987554
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-chhhccccCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIRYNLDPFGR 595 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TIrENI~~~~~ 595 (677)
+ ..|++++||||++.+|.. |++||+.++..
T Consensus 66 -----------------------------------------------~--~~~~~i~~v~q~~~l~~~ltv~enl~~~~~ 96 (240)
T 2onk_A 66 -----------------------------------------------P--PERRGIGFVPQDYALFPHLSVYRNIAYGLR 96 (240)
T ss_dssp -----------------------------------------------C--TTTSCCBCCCSSCCCCTTSCHHHHHHTTCT
T ss_pred -----------------------------------------------c--hhhCcEEEEcCCCccCCCCcHHHHHHHHHH
Confidence 1 236789999999988865 99999976432
Q ss_pred C-----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------------
Q psy845 596 C-----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------- 651 (677)
Q Consensus 596 ~-----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------- 651 (677)
. .++++.++++..++.++..+ ...+||||||||++||||++++|+++
T Consensus 97 ~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~ 167 (240)
T 2onk_A 97 NVERVERDRRVREMAEKLGIAHLLDR---------KPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLME 167 (240)
T ss_dssp TSCHHHHHHHHHHHHHTTTCTTTTTC---------CGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHH
T ss_pred HcCCchHHHHHHHHHHHcCCHHHhcC---------ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 1 13456777887777654332 35689999999999999999999976
Q ss_pred -----cc-cccce---ecc---c-ccccEEEEEeCCeeC
Q psy845 652 -----KK-SGVNI---TRP---V-TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 -----~~-~~~TI---LsT---I-~~aDrIlVLd~GrIV 677 (677)
.. .++|| .|. + +.||||++|++|+++
T Consensus 168 ~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~ 206 (240)
T 2onk_A 168 ELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIV 206 (240)
T ss_dssp HHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 11 26673 333 2 349999999999974
No 41
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=5.7e-34 Score=305.17 Aligned_cols=169 Identities=25% Similarity=0.350 Sum_probs=139.0
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
++++||+++|++ . +|+|+||++++||.+||+||||||||||+|+|+|+++|++|+|.+||+++.+.
T Consensus 2 l~~~~l~~~y~~--~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~----------- 67 (348)
T 3d31_A 2 IEIESLSRKWKN--F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDL----------- 67 (348)
T ss_dssp EEEEEEEEECSS--C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTS-----------
T ss_pred EEEEEEEEEECC--E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCC-----------
Confidence 689999999964 4 99999999999999999999999999999999999999999999999998665
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-chhhccccCC-
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIRYNLDPFG- 594 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TIrENI~~~~- 594 (677)
+. .|+++|||+|++.+|.. |++||+.++.
T Consensus 68 -----------------------------------------------~~--~~r~ig~v~Q~~~l~~~ltv~enl~~~~~ 98 (348)
T 3d31_A 68 -----------------------------------------------SP--EKHDIAFVYQNYSLFPHMNVKKNLEFGMR 98 (348)
T ss_dssp -----------------------------------------------CH--HHHTCEEECTTCCCCTTSCHHHHHHHHHH
T ss_pred -----------------------------------------------ch--hhCcEEEEecCcccCCCCCHHHHHHHHHH
Confidence 22 36789999999988864 9999997531
Q ss_pred ---CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------------------
Q psy845 595 ---RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------------------- 651 (677)
Q Consensus 595 ---~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------------------- 651 (677)
...++++.++++..++.++..+ ...+||||||||++|||||+++|+++
T Consensus 99 ~~~~~~~~~v~~~l~~~~L~~~~~~---------~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~ 169 (348)
T 3d31_A 99 MKKIKDPKRVLDTARDLKIEHLLDR---------NPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREM 169 (348)
T ss_dssp HHCCCCHHHHHHHHHHTTCTTTTTS---------CGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHcCCchHhcC---------ChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHH
Confidence 1123678888999988766444 34689999999999999999999976
Q ss_pred ----cc-cccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 ----KK-SGVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ----~~-~~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
.. .++|+ .|.. +-||||+||++|+++
T Consensus 170 l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~ 207 (348)
T 3d31_A 170 LSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLI 207 (348)
T ss_dssp HHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEE
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 11 25663 3332 349999999999974
No 42
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=6.7e-34 Score=307.11 Aligned_cols=171 Identities=23% Similarity=0.304 Sum_probs=135.0
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.|+++||+++|++ ..+|+|+||++++||.+||+||||||||||+|+|+|+++|++|+|.+||.++.+.
T Consensus 11 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~---------- 78 (372)
T 1v43_A 11 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYL---------- 78 (372)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS----------
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCC----------
Confidence 4999999999964 3699999999999999999999999999999999999999999999999998766
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~ 594 (677)
+. .++++|||+|++.+|. .|++||+.++.
T Consensus 79 ------------------------------------------------~~--~~r~ig~v~Q~~~l~~~ltv~eni~~~~ 108 (372)
T 1v43_A 79 ------------------------------------------------PP--KDRNISMVFQSYAVWPHMTVYENIAFPL 108 (372)
T ss_dssp ------------------------------------------------CG--GGGTEEEEEC------CCCHHHHHHTTC
T ss_pred ------------------------------------------------Ch--hhCcEEEEecCcccCCCCCHHHHHHHHH
Confidence 22 2467899999998885 59999997643
Q ss_pred C---CCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 R---CHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ~---~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
+ .+. +++.++++..++.++..+ ...+||||||||++|||||+++|+++
T Consensus 109 ~~~~~~~~~~~~~v~~~l~~~~L~~~~~r---------~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~ 179 (372)
T 1v43_A 109 KIKKFPKDEIDKRVRWAAELLQIEELLNR---------YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA 179 (372)
T ss_dssp C--CCCHHHHHHHHHHHHHHTTCGGGTTS---------CTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHcCChhHhcC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHH
Confidence 2 222 357778888888766444 34699999999999999999999976
Q ss_pred --------cc-cccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 --------KK-SGVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~-~~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
.. .+.|+ .|.. +-||||+||++|+++
T Consensus 180 l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~ 221 (372)
T 1v43_A 180 MRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLL 221 (372)
T ss_dssp HHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 11 25662 3332 349999999999974
No 43
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=9.8e-34 Score=305.80 Aligned_cols=177 Identities=25% Similarity=0.305 Sum_probs=138.6
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.|+++||+++|++ .++|+|+||++++||.+||+||||||||||+|+|+|+.+|++|+|.+||.++.+.. +++
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~-----~~~- 74 (372)
T 1g29_1 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPE-----KGI- 74 (372)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGG-----GTE-
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECcccc-----ccc-
Confidence 3899999999964 36999999999999999999999999999999999999999999999999986510 000
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~ 594 (677)
+ .+. .|+++|||+|++.+|. .|++||+.++.
T Consensus 75 -------------------------------------------~---~~~--~~r~ig~v~Q~~~l~~~ltv~eni~~~~ 106 (372)
T 1g29_1 75 -------------------------------------------F---VPP--KDRDIAMVFQSYALYPHMTVYDNIAFPL 106 (372)
T ss_dssp -------------------------------------------E---CCG--GGSSEEEECSCCCCCTTSCHHHHHHHHH
T ss_pred -------------------------------------------c---CCH--hHCCEEEEeCCCccCCCCCHHHHHHHHH
Confidence 0 021 2578999999999984 69999997531
Q ss_pred ---CCC----hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------
Q psy845 595 ---RCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK---------------- 651 (677)
Q Consensus 595 ---~~s----deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL---------------- 651 (677)
..+ ++++.++++..++.++..+ ...+||||||||+||||||+++|+++
T Consensus 107 ~~~~~~~~~~~~~v~~~l~~~~L~~~~~r---------~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~ 177 (372)
T 1g29_1 107 KLRKVPRQEIDQRVREVAELLGLTELLNR---------KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVR 177 (372)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHTCGGGTTC---------CGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHCCCchHhcC---------CcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHH
Confidence 222 2456778888888766443 34689999999999999999999976
Q ss_pred --------cc-cccce---eccc----ccccEEEEEeCCeeC
Q psy845 652 --------KK-SGVNI---TRPV----TSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 --------~~-~~~TI---LsTI----~~aDrIlVLd~GrIV 677 (677)
.. .+.|+ .|.. +-||||+||++|+++
T Consensus 178 l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~ 219 (372)
T 1g29_1 178 MRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQ 219 (372)
T ss_dssp HHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEE
Confidence 11 25662 3332 349999999999974
No 44
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=3.4e-33 Score=288.30 Aligned_cols=176 Identities=19% Similarity=0.258 Sum_probs=129.6
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcC--CCCCccEEEECCEecccccHHHhhh
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRL--VELSSGQIKIDDFDIASVELETLRS 512 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~--y~p~~G~I~IdG~dI~~l~~~~~~~ 512 (677)
.-++++||+++|++ .++|+|+||++++||++||+||||||||||+|+|+|+ ++|++|+|.+||.++.+.
T Consensus 19 ~~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~------- 89 (267)
T 2zu0_C 19 HMLSIKDLHVSVED--KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLAL------- 89 (267)
T ss_dssp -CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGS-------
T ss_pred ceEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcC-------
Confidence 35999999999964 3699999999999999999999999999999999999 679999999999998776
Q ss_pred hcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHH-hhhccccccccccccc-chhhcc
Q psy845 513 RLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL-RSRLSVIPQDPVLFNG-TIRYNL 590 (677)
Q Consensus 513 ~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~L-R~~I~~V~Qd~~LFsg-TIrENI 590 (677)
+.+.. |+.++||+|++.+|.+ |++||+
T Consensus 90 ---------------------------------------------------~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~ 118 (267)
T 2zu0_C 90 ---------------------------------------------------SPEDRAGEGIFMAFQYPVEIPGVSNQFFL 118 (267)
T ss_dssp ---------------------------------------------------CHHHHHHHTEEEECSSCCCCTTCBHHHHH
T ss_pred ---------------------------------------------------CHHHHhhCCEEEEccCccccccccHHHHH
Confidence 22222 4457778888777754 777777
Q ss_pred ccC--------C--CCCh----HHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-----
Q psy845 591 DPF--------G--RCHD----TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----- 651 (677)
Q Consensus 591 ~~~--------~--~~sd----eeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----- 651 (677)
... + ..++ +++.++++..++.+.. .+.. -+.+||||||||++|||||+++|+++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~------~~~~-~~~~LSgGq~QRv~iAraL~~~p~lLlLDEP 191 (267)
T 2zu0_C 119 QTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDL------LTRS-VNVGFSGGEKKRNDILQMAVLEPELCILDES 191 (267)
T ss_dssp HHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTT------TTSB-TTTTCCHHHHHHHHHHHHHHHCCSEEEEEST
T ss_pred HHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhH------hcCC-cccCCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 421 0 1122 2355566666553210 1111 12369999999999999999999976
Q ss_pred -------------------cccccce---ec---cccc--ccEEEEEeCCeeC
Q psy845 652 -------------------KKSGVNI---TR---PVTS--CDKVLVMDNGQAL 677 (677)
Q Consensus 652 -------------------~~~~~TI---Ls---TI~~--aDrIlVLd~GrIV 677 (677)
..+++|| .| .+.. ||||++|++|+++
T Consensus 192 ts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~ 244 (267)
T 2zu0_C 192 DSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIV 244 (267)
T ss_dssp TTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEE
Confidence 1235673 22 3443 8999999999974
No 45
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.98 E-value=6.9e-33 Score=277.95 Aligned_cols=141 Identities=21% Similarity=0.392 Sum_probs=118.8
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
..++++||+++|++ ++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.
T Consensus 9 ~~l~~~~ls~~y~~---~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~----------- 74 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT----------- 74 (214)
T ss_dssp CEEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----------
T ss_pred ceEEEEEEEEEeCC---eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----------
Confidence 46999999999964 5999999999999999999999999999999999999999999999998752
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-chhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TIrENI~~~ 593 (677)
..|++++||||++.+|.+ |++||+.++
T Consensus 75 ----------------------------------------------------~~~~~i~~v~q~~~~~~~~tv~enl~~~ 102 (214)
T 1sgw_A 75 ----------------------------------------------------KVKGKIFFLPEEIIVPRKISVEDYLKAV 102 (214)
T ss_dssp ----------------------------------------------------GGGGGEEEECSSCCCCTTSBHHHHHHHH
T ss_pred ----------------------------------------------------hhcCcEEEEeCCCcCCCCCCHHHHHHHH
Confidence 136678888888888865 999999643
Q ss_pred ----C-CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 594 ----G-RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 594 ----~-~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
+ +..++++.++++..++.+. .+ .+.+||||||||++||||++++|+++
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~gl~~~-~~---------~~~~LSgGqkqrv~laraL~~~p~ll 155 (214)
T 1sgw_A 103 ASLYGVKVNKNEIMDALESVEVLDL-KK---------KLGELSQGTIRRVQLASTLLVNAEIY 155 (214)
T ss_dssp HHHTTCCCCHHHHHHHHHHTTCCCT-TS---------BGGGSCHHHHHHHHHHHHTTSCCSEE
T ss_pred HHhcCCchHHHHHHHHHHHcCCCcC-CC---------ChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 1 2235667888888887654 22 46799999999999999999999976
No 46
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.97 E-value=1.6e-32 Score=283.32 Aligned_cols=167 Identities=22% Similarity=0.280 Sum_probs=135.1
Q ss_pred EEEEeeeEEeCCC--CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 437 IKFKNVSLRYRDN--WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 437 I~fknVsFsY~~~--~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
++++|++++|+++ ..++|+|+||+++ ||++||+||||||||||+++|+|++ |++|+|.+||.++.+.
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--------- 70 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--------- 70 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC---------
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch---------
Confidence 6899999999641 1369999999999 9999999999999999999999999 9999999999886431
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcc-cccccccccccchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS-VIPQDPVLFNGTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~-~V~Qd~~LFsgTIrENI~~~ 593 (677)
+. |++++ ||||++.+ +.|++||+.++
T Consensus 71 ---------------------------------------------------~~-~~~i~~~v~Q~~~l-~~tv~enl~~~ 97 (263)
T 2pjz_A 71 ---------------------------------------------------RN-YIRYSTNLPEAYEI-GVTVNDIVYLY 97 (263)
T ss_dssp ---------------------------------------------------SC-CTTEEECCGGGSCT-TSBHHHHHHHH
T ss_pred ---------------------------------------------------HH-hhheEEEeCCCCcc-CCcHHHHHHHh
Confidence 12 67889 99999988 89999999653
Q ss_pred C---CCChHHHHHHHHHccch-hhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------
Q psy845 594 G---RCHDTELWDALEKSHLK-SKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------ 651 (677)
Q Consensus 594 ~---~~sdeeI~~Al~~a~l~-efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------ 651 (677)
. +..++++.++++..++. +...+ ...+||||||||++||||++++|+++
T Consensus 98 ~~~~~~~~~~~~~~l~~~gl~~~~~~~---------~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~ 168 (263)
T 2pjz_A 98 EELKGLDRDLFLEMLKALKLGEEILRR---------KLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVIS 168 (263)
T ss_dssp HHHTCCCHHHHHHHHHHTTCCGGGGGS---------BGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHH
T ss_pred hhhcchHHHHHHHHHHHcCCChhHhcC---------ChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHH
Confidence 2 34466788888888876 54322 46799999999999999999999976
Q ss_pred ----cccccce---ecc---c-cccc-EEEEEeCCeeC
Q psy845 652 ----KKSGVNI---TRP---V-TSCD-KVLVMDNGQAL 677 (677)
Q Consensus 652 ----~~~~~TI---LsT---I-~~aD-rIlVLd~GrIV 677 (677)
.... |+ .|. + +.|| ||++|++|+++
T Consensus 169 ~~L~~~~~-tviivtHd~~~~~~~~d~~i~~l~~G~i~ 205 (263)
T 2pjz_A 169 RYIKEYGK-EGILVTHELDMLNLYKEYKAYFLVGNRLQ 205 (263)
T ss_dssp HHHHHSCS-EEEEEESCGGGGGGCTTSEEEEEETTEEE
T ss_pred HHHHHhcC-cEEEEEcCHHHHHHhcCceEEEEECCEEE
Confidence 1122 62 332 3 3599 99999999974
No 47
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.97 E-value=5.3e-32 Score=277.52 Aligned_cols=159 Identities=22% Similarity=0.317 Sum_probs=126.0
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-++++||+++|+++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|. .
T Consensus 4 ~l~i~~l~~~y~~~-~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~--------~---------- 64 (253)
T 2nq2_C 4 ALSVENLGFYYQAE-NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE--------V---------- 64 (253)
T ss_dssp EEEEEEEEEEETTT-TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE--------E----------
T ss_pred eEEEeeEEEEeCCC-CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE--------E----------
Confidence 38999999999722 3699999999999999999999999999999999999999999997 1
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCC
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFG 594 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~ 594 (677)
|++++||||++.+| +.|++||+.++.
T Consensus 65 -----------------------------------------------------~~~i~~v~q~~~~~~~~tv~enl~~~~ 91 (253)
T 2nq2_C 65 -----------------------------------------------------YQSIGFVPQFFSSPFAYSVLDIVLMGR 91 (253)
T ss_dssp -----------------------------------------------------CSCEEEECSCCCCSSCCBHHHHHHGGG
T ss_pred -----------------------------------------------------eccEEEEcCCCccCCCCCHHHHHHHhh
Confidence 23467777777766 679999986532
Q ss_pred C--------CC---hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------
Q psy845 595 R--------CH---DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------ 651 (677)
Q Consensus 595 ~--------~s---deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------ 651 (677)
. .. ++++.++++..++.++..+ ...+||||||||++||||++++|+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~ 162 (253)
T 2nq2_C 92 STHINTFAKPKSHDYQVAMQALDYLNLTHLAKR---------EFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLA 162 (253)
T ss_dssp GGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTS---------BGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHH
T ss_pred hhhcccccCCCHHHHHHHHHHHHHcCChHHhcC---------ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 1 11 2457778888888765433 45799999999999999999999976
Q ss_pred ------------ccc-ccce---ecc---c-ccccEEEEEeCCe
Q psy845 652 ------------KKS-GVNI---TRP---V-TSCDKVLVMDNGQ 675 (677)
Q Consensus 652 ------------~~~-~~TI---LsT---I-~~aDrIlVLd~Gr 675 (677)
..+ ++|| .|. + +.||||++|++|+
T Consensus 163 ~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~ 206 (253)
T 2nq2_C 163 NQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN 206 (253)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe
Confidence 112 6673 332 3 3599999999997
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.96 E-value=1.9e-30 Score=295.81 Aligned_cols=104 Identities=24% Similarity=0.286 Sum_probs=80.8
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc-cccchhhccccC--CCC-ChHHH
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-FNGTIRYNLDPF--GRC-HDTEL 601 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L-FsgTIrENI~~~--~~~-sdeeI 601 (677)
+.+|.||||||||+++|.|+.+|++|+|.+ +.+++||||++.+ ++.|++||+... ... ..+.+
T Consensus 386 ~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~ 452 (607)
T 3bk7_A 386 GIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYK 452 (607)
T ss_dssp EEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHH
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHH
Confidence 566889999999999999999999999987 2479999999876 578999998532 111 12335
Q ss_pred HHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 602 WDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 602 ~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
.++++..++.+... . ...+||||||||++|||||+++|+++
T Consensus 453 ~~~l~~~~l~~~~~-------~--~~~~LSGGe~QRv~iAraL~~~p~lL 493 (607)
T 3bk7_A 453 TELLKPLGIIDLYD-------R--NVEDLSGGELQRVAIAATLLRDADIY 493 (607)
T ss_dssp HHTHHHHTCTTTTT-------S--BGGGCCHHHHHHHHHHHHHTSCCSEE
T ss_pred HHHHHHcCCchHhc-------C--ChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 55666666543321 1 45799999999999999999999976
No 49
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.96 E-value=2.1e-32 Score=288.31 Aligned_cols=204 Identities=14% Similarity=0.088 Sum_probs=154.4
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccccccccccCCC-CCccEEE
Q psy845 361 GSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLVPEGRGPITSEFGQVKVKLADWP-RQGTIKF 439 (677)
Q Consensus 361 G~ls~g~l~~~l~~~~~l~~~l~~l~~~~~~l~~~~~s~eRI~eil~~~~~e~~~~~~~~~~~~~~~~~~~~-~~g~I~f 439 (677)
+..+-+.+.+++.+..+ ..++..+...+..++++..+.+|+.++++.. ++...+ . ..++ ..+.|++
T Consensus 38 ~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~-~~~~~~-~----------~~~~~~~~~i~~ 104 (305)
T 2v9p_A 38 AAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKAR-CKLATG-E----------GSWKSILTFFNY 104 (305)
T ss_dssp TTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHCCS-S----------CCTHHHHHHHHH
T ss_pred hcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccccCC-C----------CcccccCCeEEE
Confidence 33444556666666555 4788999999999999999999999998532 221111 0 0111 1245899
Q ss_pred EeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccC
Q psy845 440 KNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQ 519 (677)
Q Consensus 440 knVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q 519 (677)
+||+|+|+ .++|+|+||+|++||++|||||||||||||+++|+|++ +|+|.
T Consensus 105 ~~vs~~y~---~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~----------------------- 155 (305)
T 2v9p_A 105 QNIELITF---INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL----------------------- 155 (305)
T ss_dssp TTCCHHHH---HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE-----------------------
T ss_pred EEEEEEcC---hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE-----------------------
Confidence 99999997 36999999999999999999999999999999999999 78772
Q ss_pred CccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhh-ccccCCCCCh
Q psy845 520 DPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRY-NLDPFGRCHD 598 (677)
Q Consensus 520 ~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrE-NI~~~~~~sd 598 (677)
++++|++.+|++|++| ||.+..+.++
T Consensus 156 -----------------------------------------------------~~v~q~~~lf~~ti~~~ni~~~~~~~~ 182 (305)
T 2v9p_A 156 -----------------------------------------------------SFANHKSHFWLASLADTRAALVDDATH 182 (305)
T ss_dssp -----------------------------------------------------CGGGTTSGGGGGGGTTCSCEEEEEECH
T ss_pred -----------------------------------------------------EEecCccccccccHHHHhhccCccccH
Confidence 3467888999999997 9987544443
Q ss_pred HHHHHHHHHccchhhHhh-hhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhccccc---c---e------ecccccc
Q psy845 599 TELWDALEKSHLKSKVVT-MRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKKKSGV---N---I------TRPVTSC 665 (677)
Q Consensus 599 eeI~~Al~~a~l~efI~~-LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~~~~~---T---I------LsTI~~a 665 (677)
+++++++. +|+|+| |.+|||||||| |||++++|+++...+. + + +++++.|
T Consensus 183 ----------~~~~~i~~~L~~gld----g~~LSgGqkQR---ARAll~~p~iLlTs~LD~~~~~~i~~ltH~~~~~~~a 245 (305)
T 2v9p_A 183 ----------ACWRYFDTYLRNALD----GYPVSIDRKHK---AAVQIKAPPLLVTSNIDVQAEDRYLYLHSRVQTFRFE 245 (305)
T ss_dssp ----------HHHHHHHHTTTGGGG----TCCEECCCSSC---CCCEECCCCEEEEESSCSTTCGGGGGGTTTEEEEECC
T ss_pred ----------HHHHHHHHHhHccCC----ccCcCHHHHHH---HHHHhCCCCEEEECCCCHHHHHHHHHHhCCHHHHHhC
Confidence 34567777 899998 88999999999 9999999998842111 1 1 4567789
Q ss_pred cEEEEEeCCeeC
Q psy845 666 DKVLVMDNGQAL 677 (677)
Q Consensus 666 DrIlVLd~GrIV 677 (677)
||| ||++|+++
T Consensus 246 D~i-vl~~G~iv 256 (305)
T 2v9p_A 246 QPC-TDESGEQP 256 (305)
T ss_dssp CCC-CCC---CC
T ss_pred CEE-EEeCCEEE
Confidence 999 99999985
No 50
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.96 E-value=3e-30 Score=290.42 Aligned_cols=104 Identities=26% Similarity=0.317 Sum_probs=79.1
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc-cccchhhccccC--CCC-ChHHH
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-FNGTIRYNLDPF--GRC-HDTEL 601 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L-FsgTIrENI~~~--~~~-sdeeI 601 (677)
+.+|.||||||||+++|.|+.+|++|+|.+ +.+++||||++.. ++.|+.||+... ... ..+++
T Consensus 316 ~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~ 382 (538)
T 1yqt_A 316 GIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYK 382 (538)
T ss_dssp EEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHH
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHH
Confidence 455789999999999999999999999986 2469999999977 578999998532 111 12334
Q ss_pred HHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 602 WDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 602 ~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
.++++..++.+.. +. ...+||||||||++|||||+++|+++
T Consensus 383 ~~~l~~~~l~~~~-------~~--~~~~LSGGe~qrv~lAraL~~~p~lL 423 (538)
T 1yqt_A 383 TELLKPLGIIDLY-------DR--EVNELSGGELQRVAIAATLLRDADIY 423 (538)
T ss_dssp HHTTTTTTCGGGT-------TS--BGGGCCHHHHHHHHHHHHHTSCCSEE
T ss_pred HHHHHHcCChhhh-------cC--ChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 4455555544322 11 45799999999999999999999976
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.1e-27 Score=273.03 Aligned_cols=129 Identities=22% Similarity=0.263 Sum_probs=94.5
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc-cccchhhcccc--CCC-CChHHH
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-FNGTIRYNLDP--FGR-CHDTEL 601 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L-FsgTIrENI~~--~~~-~sdeeI 601 (677)
+.+|.||||||||+++|.|+.+|++|+.. -+..++++||+... |++|++||+.. .+. ...+..
T Consensus 382 ~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~-------------~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~ 448 (608)
T 3j16_B 382 VMMGENGTGKTTLIKLLAGALKPDEGQDI-------------PKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQ 448 (608)
T ss_dssp EEESCTTSSHHHHHHHHHTSSCCSBCCCC-------------CSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHH
T ss_pred EEECCCCCcHHHHHHHHhcCCCCCCCcCc-------------cCCcEEEecccccccCCccHHHHHHHHhhcccccHHHH
Confidence 45689999999999999999999999721 13479999999654 68899999842 112 233445
Q ss_pred HHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------------c---cccc
Q psy845 602 WDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------------K---KSGV 656 (677)
Q Consensus 602 ~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------------~---~~~~ 656 (677)
.++++..++.+.. |. ...+||||||||++|||||.++|+++ . ..++
T Consensus 449 ~~~l~~l~l~~~~-------~~--~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~ 519 (608)
T 3j16_B 449 TDVVKPLRIDDII-------DQ--EVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKK 519 (608)
T ss_dssp HHTHHHHTSTTTS-------SS--BSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCChhhh-------cC--ChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 6677777665432 22 45799999999999999999999976 1 1356
Q ss_pred ce---eccc----ccccEEEEEeC--Cee
Q psy845 657 NI---TRPV----TSCDKVLVMDN--GQA 676 (677)
Q Consensus 657 TI---LsTI----~~aDrIlVLd~--GrI 676 (677)
|| .|.+ .-||||+||++ |++
T Consensus 520 tviivtHdl~~~~~~aDrvivl~~~~g~~ 548 (608)
T 3j16_B 520 TAFIVEHDFIMATYLADKVIVFEGIPSKN 548 (608)
T ss_dssp EEEEECSCHHHHHHHCSEEEECEEETTTE
T ss_pred EEEEEeCCHHHHHHhCCEEEEEeCCCCeE
Confidence 63 3332 24999999996 654
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.91 E-value=1.9e-24 Score=256.56 Aligned_cols=76 Identities=24% Similarity=0.428 Sum_probs=68.5
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
-++++|++|+|+++..++|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|. .+++
T Consensus 671 mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I~ 739 (986)
T 2iw3_A 671 IVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRIA 739 (986)
T ss_dssp EEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCEE
T ss_pred eEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cceE
Confidence 38999999999764356999999999999999999999999999999999999999999999862 2589
Q ss_pred cccCCcc
Q psy845 516 VIPQDPV 522 (677)
Q Consensus 516 ~v~q~~~ 522 (677)
|++|++.
T Consensus 740 yv~Q~~~ 746 (986)
T 2iw3_A 740 YIKQHAF 746 (986)
T ss_dssp EECHHHH
T ss_pred eeccchh
Confidence 9999874
No 53
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.90 E-value=1.8e-24 Score=243.59 Aligned_cols=135 Identities=22% Similarity=0.291 Sum_probs=104.3
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
..++++|++++|++ ..+++.|+++++||++||+||||||||||+++|+|+.+|++|+|.++|.
T Consensus 268 ~~l~~~~l~~~~~~---~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------- 330 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD---FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ-------------- 330 (538)
T ss_dssp EEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC--------------
T ss_pred ceEEEcceEEEECC---EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe--------------
Confidence 35899999999964 4688889999999999999999999999999999999999999987653
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc-cccchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-FNGTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L-FsgTIrENI~~~ 593 (677)
.++++||++.. +..|++||+...
T Consensus 331 --------------------------------------------------------~i~~~~q~~~~~~~~tv~~~l~~~ 354 (538)
T 3ozx_A 331 --------------------------------------------------------ILSYKPQRIFPNYDGTVQQYLENA 354 (538)
T ss_dssp --------------------------------------------------------CEEEECSSCCCCCSSBHHHHHHHH
T ss_pred --------------------------------------------------------eeEeechhcccccCCCHHHHHHHh
Confidence 23445555443 367888887532
Q ss_pred C-C---CChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 594 G-R---CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 594 ~-~---~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
. . ...+...++++..++.+...+ ...+||||||||++|||||+++|+++
T Consensus 355 ~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LSGGq~QRv~iAraL~~~p~lL 407 (538)
T 3ozx_A 355 SKDALSTSSWFFEEVTKRLNLHRLLES---------NVNDLSGGELQKLYIAATLAKEADLY 407 (538)
T ss_dssp CSSTTCTTSHHHHHTTTTTTGGGCTTS---------BGGGCCHHHHHHHHHHHHHHSCCSEE
T ss_pred hhhccchhHHHHHHHHHHcCCHHHhcC---------ChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 1 1 223345666666666543322 45799999999999999999999976
No 54
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.88 E-value=2.1e-23 Score=239.84 Aligned_cols=177 Identities=19% Similarity=0.222 Sum_probs=91.6
Q ss_pred CccccceeeEEeCCcEEEEEcCCCCChHHHH---------------------HHHhcCCCCC-------ccEEEECCEec
Q psy845 451 PLVLANVSFRINHGENIGIVGRTGAGKSSLL---------------------VALFRLVELS-------SGQIKIDDFDI 502 (677)
Q Consensus 451 ~~VLknISl~I~~GE~VAIVGpSGSGKSTLi---------------------~LL~r~y~p~-------~G~I~IdG~dI 502 (677)
..+|+||||+|++||++||+||||||||||+ +++.++..|+ .|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4699999999999999999999999999998 8999999998 45666666654
Q ss_pred ccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccc-
Q psy845 503 ASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL- 581 (677)
Q Consensus 503 ~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L- 581 (677)
... -++++|+++|.+.++. .++.++++++|....
T Consensus 111 ~~~----~~~~ig~v~q~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~ 145 (670)
T 3ux8_A 111 SRN----PRSTVGTVTEIYDYLR-----------------------------------------LLFARIGRLVGGKHIG 145 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------------------------------------------
T ss_pred hcc----chhceeeeechhhhHH-----------------------------------------HHHhhhcccccccccc
Confidence 332 3667888888765443 344556666655433
Q ss_pred --cccchhhccccCCCC--Ch--HHH-----HHHHHHccchhhHhhhhcccCCC---CCCCCCChHHHHHHHHHHHHhcc
Q psy845 582 --FNGTIRYNLDPFGRC--HD--TEL-----WDALEKSHLKSKVVTMRSKLDSD---VQGDQLSLGEKQLLCLARALLRK 647 (677)
Q Consensus 582 --FsgTIrENI~~~~~~--sd--eeI-----~~Al~~a~l~efI~~LP~GldT~---v~G~~LSGGQRQRIaIARALLr~ 647 (677)
...|++||+.++... .+ .+. .++.+.. +.++.+ |++.. -...+||||||||++|||||+.+
T Consensus 146 ~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~ 220 (670)
T 3ux8_A 146 EVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL---GFLQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSR 220 (670)
T ss_dssp -----CC--------------------------CHHHH---HHHHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTC
T ss_pred cccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHH---HHHHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhC
Confidence 356999999754211 11 111 1111111 111111 22211 14679999999999999999999
Q ss_pred ch--hh------------------------cccccce---e---cccccccEEEEE------eCCeeC
Q psy845 648 TK--KK------------------------KKSGVNI---T---RPVTSCDKVLVM------DNGQAL 677 (677)
Q Consensus 648 p~--IL------------------------~~~~~TI---L---sTI~~aDrIlVL------d~GrIV 677 (677)
|+ ++ ..++.|| . ..+..||||++| ++|+++
T Consensus 221 p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~d~ii~l~~g~~~~~G~i~ 288 (670)
T 3ux8_A 221 LTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVV 288 (670)
T ss_dssp CCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHHCSEEEEECSSSGGGCCSEE
T ss_pred CCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEecccccccCCEEE
Confidence 87 65 1235663 2 234569999999 788864
No 55
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.87 E-value=4.1e-23 Score=237.37 Aligned_cols=229 Identities=21% Similarity=0.180 Sum_probs=126.5
Q ss_pred eeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHh---------------------cCCCCCccEEEECC
Q psy845 441 NVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALF---------------------RLVELSSGQIKIDD 499 (677)
Q Consensus 441 nVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~---------------------r~y~p~~G~I~IdG 499 (677)
+..+.+.+....+|+|+||+|++||++||+||||||||||+++++ +-+.+.+|.|.++|
T Consensus 325 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~~ 404 (670)
T 3ux8_A 325 GRWLEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQ 404 (670)
T ss_dssp SCEEEEEEECSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECCS
T ss_pred ccceeecCccccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccCceeEecc
Confidence 344445433346999999999999999999999999999998764 11234457899999
Q ss_pred EecccccHHHhhhhcccccCCccccccccccCCCC----CchhH-HHHHHhhhhccccccccccchh----------hhh
Q psy845 500 FDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAG----KSSLL-VALFRLVELSSGQIKIDDFDIA----------SVE 564 (677)
Q Consensus 500 ~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~----~~~~~-~~~~~~~~~~~g~i~~~~~~~~----------~~~ 564 (677)
.++...+.....+..++++|...+|..+..+...| .-++- ....+......|.++.+-.-.. ...
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~ 484 (670)
T 3ux8_A 405 SPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKR 484 (670)
T ss_dssp SCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCC
T ss_pred ccCCCCCCcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcc
Confidence 98876654444444454444433433211000000 00000 0000000001111111100000 000
Q ss_pred HHHHhhhccccccccccc-ccchhhccccCCCCC-hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHH
Q psy845 565 LETLRSRLSVIPQDPVLF-NGTIRYNLDPFGRCH-DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLAR 642 (677)
Q Consensus 565 ~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~~~s-deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIAR 642 (677)
...-+..+++.+|+...+ +.|++||+.+..... .++..++++..++.+. ..+. ...+||||||||++|||
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~l~~~~l~~~------~~~~--~~~~LSgG~~qrv~iAr 556 (670)
T 3ux8_A 485 YNRETLEVTYKGKNIAEVLDMTVEDALDFFASIPKIKRKLETLYDVGLGYM------KLGQ--PATTLSGGEAQRVKLAA 556 (670)
T ss_dssp BCHHHHTCCBTTBCHHHHHTSBHHHHHHHTTTCHHHHHHHHHHHHTTCTTS------BTTC--CGGGCCHHHHHHHHHHH
T ss_pred cChhhhheeecCCCHHHHhhCCHHHHHHHHHHhhhHHHHHHHHHHcCCchh------hccC--CchhCCHHHHHHHHHHH
Confidence 111222445555555443 579999997654322 2334445555544211 0111 56799999999999999
Q ss_pred HHhccch---hh------------------------cccccce------ecccccccEEEEE------eCCeeC
Q psy845 643 ALLRKTK---KK------------------------KKSGVNI------TRPVTSCDKVLVM------DNGQAL 677 (677)
Q Consensus 643 ALLr~p~---IL------------------------~~~~~TI------LsTI~~aDrIlVL------d~GrIV 677 (677)
||+++|+ ++ ..+|+|| ++.++.||||+|| ++|+|+
T Consensus 557 aL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~ 630 (670)
T 3ux8_A 557 ELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIV 630 (670)
T ss_dssp HHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEE
T ss_pred HHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEE
Confidence 9998873 54 1246673 3345679999999 899985
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.86 E-value=2.7e-21 Score=229.56 Aligned_cols=158 Identities=22% Similarity=0.298 Sum_probs=117.0
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
..+...|++++|++ ..+|+|+||++++||++||+||||||||||+++|+| |+| +|.+...
T Consensus 434 ~~L~~~~ls~~yg~--~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~---------- 493 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA--KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE---------- 493 (986)
T ss_dssp CEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT----------
T ss_pred ceeEEeeEEEEECC--EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc----------
Confidence 36888899999965 369999999999999999999999999999999995 543 4433210
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc-cc-cccchhhcccc
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP-VL-FNGTIRYNLDP 592 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~-~L-FsgTIrENI~~ 592 (677)
+.+++|++|++ .+ .+.|+.||+..
T Consensus 494 ------------------------------------------------------~~~~~~v~q~~~~~~~~ltv~e~l~~ 519 (986)
T 2iw3_A 494 ------------------------------------------------------ECRTVYVEHDIDGTHSDTSVLDFVFE 519 (986)
T ss_dssp ------------------------------------------------------TSCEEETTCCCCCCCTTSBHHHHHHT
T ss_pred ------------------------------------------------------ceeEEEEcccccccccCCcHHHHHHH
Confidence 01256777764 33 35688999853
Q ss_pred C-CCCChHHHHHHHHHccch-hhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------------
Q psy845 593 F-GRCHDTELWDALEKSHLK-SKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------- 651 (677)
Q Consensus 593 ~-~~~sdeeI~~Al~~a~l~-efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------- 651 (677)
. ... ++++.++++..|+. +...+ ...+||||||||++||||++++|+++
T Consensus 520 ~~~~~-~~~v~~~L~~lgL~~~~~~~---------~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~ 589 (986)
T 2iw3_A 520 SGVGT-KEAIKDKLIEFGFTDEMIAM---------PISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVN 589 (986)
T ss_dssp TCSSC-HHHHHHHHHHTTCCHHHHHS---------BGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHH
T ss_pred hhcCH-HHHHHHHHHHcCCChhhhcC---------CcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHH
Confidence 1 112 67788899999884 33322 34689999999999999999999976
Q ss_pred --cccccce---ecc---c-ccccEEEEEeCCee
Q psy845 652 --KKSGVNI---TRP---V-TSCDKVLVMDNGQA 676 (677)
Q Consensus 652 --~~~~~TI---LsT---I-~~aDrIlVLd~GrI 676 (677)
...++|+ .|. + .-||||++|++|++
T Consensus 590 ~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~i 623 (986)
T 2iw3_A 590 YLNTCGITSITISHDSVFLDNVCEYIINYEGLKL 623 (986)
T ss_dssp HHHHSCSEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred HHHhCCCEEEEEECCHHHHHHhCCEEEEEECCee
Confidence 1145663 232 2 24999999999997
No 57
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.85 E-value=9.6e-24 Score=204.74 Aligned_cols=114 Identities=14% Similarity=0.193 Sum_probs=87.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCCCCC---ccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHH
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRLVELS---SGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVA 541 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~y~p~---~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~ 541 (677)
+++||||+||||||||+++|+|+|+|+ .|+|++||.++.+++.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~---------------------------------- 48 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDK---------------------------------- 48 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--------------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCc----------------------------------
Confidence 689999999999999999999999998 8999999999877610
Q ss_pred HHHhhhhccccccccccchhhhhHHHHh-hhcc----cccccccccccchhhccccCCCCChHHHHHHHHHccchhhHhh
Q psy845 542 LFRLVELSSGQIKIDDFDIASVELETLR-SRLS----VIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVT 616 (677)
Q Consensus 542 ~~~~~~~~~g~i~~~~~~~~~~~~~~LR-~~I~----~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~ 616 (677)
...+++| ++++ +++|++.+| +++ .+++. .+++++++.+
T Consensus 49 ---------------------~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--------~~~~~-----~a~l~~~i~~ 91 (171)
T 2f1r_A 49 ---------------------EGKDSWKIYNSGADVVIASPVKLAF---IRR--------VSEEE-----GNDLDWIYER 91 (171)
T ss_dssp -----------------------CHHHHHHHHTCEEEEECSSEEEE---EEE--------CCHHH-----HTCHHHHHHH
T ss_pred ---------------------cchhHHHHHhcCCceEEECCCcEEE---Eec--------CChhh-----hhCHHHHHHh
Confidence 0245677 4788 899999988 332 12222 7899999999
Q ss_pred -hhcccCCCC-CCCCCChHHHHHHHHHHHHhccchhhc
Q psy845 617 -MRSKLDSDV-QGDQLSLGEKQLLCLARALLRKTKKKK 652 (677)
Q Consensus 617 -LP~GldT~v-~G~~LSGGQRQRIaIARALLr~p~IL~ 652 (677)
+| |+||.+ .| |||||||||+||||++++|++..
T Consensus 92 ~l~-g~dt~i~Eg--lSgGq~qri~lARall~~p~i~~ 126 (171)
T 2f1r_A 92 YLS-DYDLVITEG--FSKAGKDRIVVVKKPEEVEHFRQ 126 (171)
T ss_dssp HTT-TCSEEEEES--CGGGCCCEEEECSSGGGGGGGCS
T ss_pred hCC-CCCEEEECC--cCCCCCcEEEEEecccCCCccCc
Confidence 99 999998 44 99999999999999999999853
No 58
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.84 E-value=7.2e-24 Score=234.58 Aligned_cols=131 Identities=15% Similarity=0.013 Sum_probs=91.3
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCcc-E-EEECCEecccccHHHhhhhc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG-Q-IKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G-~-I~IdG~dI~~l~~~~~~~~i 514 (677)
++++||+++|+ |+||++++||+++|+||||||||||+|+|+|++.|++| + |.+|| + .++++
T Consensus 119 i~~~nl~~~y~--------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~~i 181 (460)
T 2npi_A 119 KYIYNLHFMLE--------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQPI 181 (460)
T ss_dssp HHHHHHHHHHH--------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTSCS
T ss_pred hhhhhhhehhh--------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccCCe
Confidence 55666666663 78999999999999999999999999999999999999 9 99987 1 13344
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG 594 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~ 594 (677)
+++||+..+|. ..-..|++||+ ++.
T Consensus 182 ~~vpq~~~l~~------------------------------------------------------~~~~~tv~eni-~~~ 206 (460)
T 2npi_A 182 FTVPGCISATP------------------------------------------------------ISDILDAQLPT-WGQ 206 (460)
T ss_dssp SSCSSCCEEEE------------------------------------------------------CCSCCCTTCTT-CSC
T ss_pred eeeccchhhcc------------------------------------------------------cccccchhhhh-ccc
Confidence 44444443322 00024777777 432
Q ss_pred CC-----ChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHH--Hhccchh
Q psy845 595 RC-----HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARA--LLRKTKK 650 (677)
Q Consensus 595 ~~-----sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARA--LLr~p~I 650 (677)
.. .++++.++++..|+.+. .+..+||||||||+++||| |+++|++
T Consensus 207 ~~~~~~~~~~~~~~ll~~~gl~~~-----------~~~~~LSgGq~qrlalAra~rL~~~p~i 258 (460)
T 2npi_A 207 SLTSGATLLHNKQPMVKNFGLERI-----------NENKDLYLECISQLGQVVGQRLHLDPQV 258 (460)
T ss_dssp BCBSSCCSSCCBCCEECCCCSSSG-----------GGCHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred ccccCcchHHHHHHHHHHhCCCcc-----------cchhhhhHHHHHHHHHHHHHHhccCccc
Confidence 21 11222233334443322 2356899999999999999 9999998
No 59
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.83 E-value=7e-23 Score=204.14 Aligned_cols=155 Identities=12% Similarity=0.069 Sum_probs=103.8
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccH-HHhhhhcccccCCcccccccccc
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL-ETLRSRLSVIPQDPVLFNGIVGR 530 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~-~~~~~~i~~v~q~~~lf~~~~~~ 530 (677)
.-|+|+||++++||++||+||||||||||+++|+|++ | |+|.+ |+++...+. ...++.+++++|++.+|..
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~---- 82 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED---- 82 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH----
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH----
Confidence 3699999999999999999999999999999999999 6 99999 887754322 2246788888888766641
Q ss_pred CCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHHHHccc
Q psy845 531 TGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHL 610 (677)
Q Consensus 531 n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~a~l 610 (677)
.++|+.+++.+++++|. ++ .+++++.++++....
T Consensus 83 -------------------------------------------~~~~~~~l~~~~~~~~~-~g--~~~~~i~~~l~~~~~ 116 (218)
T 1z6g_A 83 -------------------------------------------KLKNEDFLEYDNYANNF-YG--TLKSEYDKAKEQNKI 116 (218)
T ss_dssp -------------------------------------------HHHTTCEEEEEEETTEE-EE--EEHHHHHHHHHTTCE
T ss_pred -------------------------------------------hhhccchhhhhhccccc-CC--CcHHHHHHHHhCCCc
Confidence 13577888888888883 22 234556666665332
Q ss_pred hhhHhhhhcccCCCCCCCCCChHHHHHHHH-----HHHHhccchhhccccc-------c---e---ecc---------cc
Q psy845 611 KSKVVTMRSKLDSDVQGDQLSLGEKQLLCL-----ARALLRKTKKKKKSGV-------N---I---TRP---------VT 663 (677)
Q Consensus 611 ~efI~~LP~GldT~v~G~~LSGGQRQRIaI-----ARALLr~p~IL~~~~~-------T---I---LsT---------I~ 663 (677)
. +-..+||||||||+++ ||+++++|++..+..+ | | +.. +.
T Consensus 117 ~-------------il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~ 183 (218)
T 1z6g_A 117 C-------------LFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLL 183 (218)
T ss_dssp E-------------EEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTS
T ss_pred E-------------EEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhccc
Confidence 1 1125899999999999 8999999987622111 1 2 111 25
Q ss_pred cccEEEEEeC
Q psy845 664 SCDKVLVMDN 673 (677)
Q Consensus 664 ~aDrIlVLd~ 673 (677)
.||+|+|+++
T Consensus 184 ~~d~iiv~~~ 193 (218)
T 1z6g_A 184 NFNLSIINDD 193 (218)
T ss_dssp CCSEEEECSS
T ss_pred CCCEEEECCC
Confidence 7999999886
No 60
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.83 E-value=2e-21 Score=218.88 Aligned_cols=170 Identities=17% Similarity=0.184 Sum_probs=113.3
Q ss_pred eeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEE-----------EECCEecccccHHH
Q psy845 441 NVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI-----------KIDDFDIASVELET 509 (677)
Q Consensus 441 nVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I-----------~IdG~dI~~l~~~~ 509 (677)
++..+|+.+. ..|.++.. .++||.+||+||||||||||+|+|+|++.|++|+| .++|.++..+....
T Consensus 4 ~~~~~~~~~~-f~l~~l~~-~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~ 81 (538)
T 3ozx_A 4 EVIHRYKVNG-FKLFGLPT-PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKEL 81 (538)
T ss_dssp CEEEESSTTS-CEEECCCC-CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHH
T ss_pred CCceecCCCc-eeecCCCC-CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHH
Confidence 4567887652 33443332 45899999999999999999999999999999987 22332221110000
Q ss_pred hhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhc
Q psy845 510 LRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYN 589 (677)
Q Consensus 510 ~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrEN 589 (677)
.. .....+..+.+++|.+.++.+|++++
T Consensus 82 ~~----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~v~~~ 109 (538)
T 3ozx_A 82 YS----------------------------------------------------NELKIVHKIQYVEYASKFLKGTVNEI 109 (538)
T ss_dssp HT----------------------------------------------------TCCCEEEECSCTTGGGTTCCSBHHHH
T ss_pred hh----------------------------------------------------cccchhhccchhhhhhhhccCcHHHH
Confidence 00 00012334667778888888999998
Q ss_pred cccCCCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------
Q psy845 590 LDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------ 651 (677)
Q Consensus 590 I~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------ 651 (677)
+... ...++..++++..++.+.. |. ...+||||||||++|||||+++|+++
T Consensus 110 l~~~--~~~~~~~~~l~~l~l~~~~-------~~--~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~ 178 (538)
T 3ozx_A 110 LTKI--DERGKKDEVKELLNMTNLW-------NK--DANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMA 178 (538)
T ss_dssp HHHH--CCSSCHHHHHHHTTCGGGT-------TS--BGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHH
T ss_pred hhcc--hhHHHHHHHHHHcCCchhh-------cC--ChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHH
Confidence 7521 1233466778888775542 22 34689999999999999999999976
Q ss_pred -----cccccce---eccc----ccccEEEEEeCCe
Q psy845 652 -----KKSGVNI---TRPV----TSCDKVLVMDNGQ 675 (677)
Q Consensus 652 -----~~~~~TI---LsTI----~~aDrIlVLd~Gr 675 (677)
..+++|| .|.+ .-||+|.||++|.
T Consensus 179 ~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 179 KAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 1236663 2322 2399999999764
No 61
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.80 E-value=2.4e-20 Score=200.67 Aligned_cols=115 Identities=17% Similarity=0.144 Sum_probs=66.9
Q ss_pred cccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEE-CCEecccccHHHhhhhcccccCCccccccccccC
Q psy845 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKI-DDFDIASVELETLRSRLSVIPQDPVLFNGIVGRT 531 (677)
Q Consensus 453 VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~I-dG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n 531 (677)
+++|+||++++| +++|+||||||||||+++|.++..+.+++-.+ .|.+ .++|.+. |. ..+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~------------~~~v~~~---~~---~~~ 110 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEK------------ELLVTGF---WG---DGD 110 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCS------------EEEEEEE---C-------
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCC------------eEEEEEE---EE---ecC
Confidence 799999999999 99999999999999999998877654321111 0100 0111100 00 000
Q ss_pred CCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhh-cccccccccccccchhhc
Q psy845 532 GAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR-LSVIPQDPVLFNGTIRYN 589 (677)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~-I~~V~Qd~~LFsgTIrEN 589 (677)
+ |....+. ..+..++.|+++++|.+++..+..++++. +++++|++.++-++-.++
T Consensus 111 ~-~~~~~l~--r~~~~~~~~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~ 166 (415)
T 4aby_A 111 E-SEADSAS--RRLSSAGRGAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQ 166 (415)
T ss_dssp -----CEEE--EEEETTSCEEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHH
T ss_pred C-CceEEEE--EEEecCCceEEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHH
Confidence 0 0000000 00112456677777777776667777666 678888877776554433
No 62
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.78 E-value=8.9e-20 Score=215.95 Aligned_cols=30 Identities=37% Similarity=0.524 Sum_probs=29.0
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHH
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLL 481 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi 481 (677)
..|+|+||+|++||.+||+||||||||||+
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhH
Confidence 589999999999999999999999999997
No 63
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.76 E-value=1.1e-22 Score=218.25 Aligned_cols=147 Identities=16% Similarity=0.079 Sum_probs=110.0
Q ss_pred EEEeeeEE---eCCCCCccc---------cceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccc
Q psy845 438 KFKNVSLR---YRDNWPLVL---------ANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV 505 (677)
Q Consensus 438 ~fknVsFs---Y~~~~~~VL---------knISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l 505 (677)
+|+||+|+ |++.++++| +++|+++++|+.++|+|||||||||++++|+|+++|++|.|.++|. +++
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~--~e~ 214 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV--PEL 214 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS--SCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc--ccc
Confidence 89999999 965333566 9999999999999999999999999999999999999999999874 343
Q ss_pred cHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccc-ccccc---
Q psy845 506 ELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIP-QDPVL--- 581 (677)
Q Consensus 506 ~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~-Qd~~L--- 581 (677)
....+|+.+++++ |++.+
T Consensus 215 ----------------------------------------------------------~~~~~~~~v~~v~~q~~~~~~~ 236 (361)
T 2gza_A 215 ----------------------------------------------------------FLPDHPNHVHLFYPSEAKEEEN 236 (361)
T ss_dssp ----------------------------------------------------------CCTTCSSEEEEECC--------
T ss_pred ----------------------------------------------------------CccccCCEEEEeecCccccccc
Confidence 2223466788888 88776
Q ss_pred cccchhhccccC-CCCChHHHHHHHHHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHH
Q psy845 582 FNGTIRYNLDPF-GRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARAL 644 (677)
Q Consensus 582 FsgTIrENI~~~-~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARAL 644 (677)
+..|+++||+.. ...+|..+..+++.++++++++++|.|++|.+ -+.+-+.+..+|+.....-
T Consensus 237 ~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 237 APVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSCHAGSCELTFERLALMVLQ 302 (361)
T ss_dssp --CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEEECSSHHHHHHHHHHHHTT
T ss_pred cccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHHHHhc
Confidence 788999999643 22344444444555667789999999999977 4556688889999887653
No 64
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.76 E-value=2.1e-19 Score=211.24 Aligned_cols=46 Identities=28% Similarity=0.440 Sum_probs=40.8
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHH-HhcC
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVA-LFRL 487 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~L-L~r~ 487 (677)
..++++|+++ .+|+|+||+|++||++||+|+||||||||++. |+|.
T Consensus 501 ~~L~v~~l~~-------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~ 547 (842)
T 2vf7_A 501 GWLELNGVTR-------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDA 547 (842)
T ss_dssp CEEEEEEEEE-------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHH
T ss_pred ceEEEEeeee-------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHH
Confidence 4599999985 27999999999999999999999999999996 6644
No 65
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.74 E-value=1.2e-18 Score=206.13 Aligned_cols=44 Identities=27% Similarity=0.404 Sum_probs=39.0
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHh
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALF 485 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~ 485 (677)
..++++|++. .+|+|+||+|++||.+||+|+||||||||++.++
T Consensus 628 ~~L~v~~l~~-------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 628 RWLEVVGARE-------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp CEEEEEEECS-------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred eEEEEecCcc-------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3588999862 3799999999999999999999999999999864
No 66
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.72 E-value=9.7e-18 Score=198.91 Aligned_cols=44 Identities=18% Similarity=0.299 Sum_probs=39.1
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHh
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALF 485 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~ 485 (677)
..++++|++. .+|+|+||+|++||++||+|+||||||||+++++
T Consensus 646 ~~L~v~~l~~-------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 646 RQLTVVGARE-------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp SEEEEEEECS-------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred ceEEEecCcc-------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3589999862 3799999999999999999999999999999854
No 67
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.72 E-value=5.9e-20 Score=183.14 Aligned_cols=40 Identities=23% Similarity=0.246 Sum_probs=37.7
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEE
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~ 496 (677)
.+|+|+ ++||++||+||||||||||+++|+|+ +|++|+|.
T Consensus 14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~ 53 (208)
T 3b85_A 14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS 53 (208)
T ss_dssp HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS
T ss_pred HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee
Confidence 589995 89999999999999999999999999 99999983
No 68
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.72 E-value=7.3e-21 Score=200.65 Aligned_cols=154 Identities=18% Similarity=0.154 Sum_probs=109.3
Q ss_pred CccEEEEeeeEEeCCCCCccccceeeE-----------------------EeCCcEEEEEcCCCCChHHHHHHHhcCCCC
Q psy845 434 QGTIKFKNVSLRYRDNWPLVLANVSFR-----------------------INHGENIGIVGRTGAGKSSLLVALFRLVEL 490 (677)
Q Consensus 434 ~g~I~fknVsFsY~~~~~~VLknISl~-----------------------I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p 490 (677)
++.|+++||++.|. ++++++|+. +++|+++||+||||||||||+++|+|+++|
T Consensus 41 ~~~i~~~~v~~~y~----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 41 GEQIDLLEVEEVYL----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp TCCCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCeEEeeehhhhhh----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 45799999999994 578888775 899999999999999999999999999988
Q ss_pred CccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhh
Q psy845 491 SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS 570 (677)
Q Consensus 491 ~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~ 570 (677)
++|+ +
T Consensus 117 ~~G~---------------------------------------------------------------------------~ 121 (312)
T 3aez_A 117 WDHH---------------------------------------------------------------------------P 121 (312)
T ss_dssp STTC---------------------------------------------------------------------------C
T ss_pred cCCC---------------------------------------------------------------------------C
Confidence 7552 2
Q ss_pred hcccccccccccccchhhccccCC--CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccc
Q psy845 571 RLSVIPQDPVLFNGTIRYNLDPFG--RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKT 648 (677)
Q Consensus 571 ~I~~V~Qd~~LFsgTIrENI~~~~--~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p 648 (677)
++++|+||++++..|++||+.... ...+. .+...+.+.++.+.+|.. .....+|||||+||+++|||++.+|
T Consensus 122 ~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~-----~d~~~~~~~L~~l~~~~~-~~~~~~lS~G~~qRv~~a~al~~~p 195 (312)
T 3aez_A 122 RVDLVTTDGFLYPNAELQRRNLMHRKGFPES-----YNRRALMRFVTSVKSGSD-YACAPVYSHLHYDIIPGAEQVVRHP 195 (312)
T ss_dssp CEEEEEGGGGBCCHHHHHHTTCTTCTTSGGG-----BCHHHHHHHHHHHHTTCS-CEEEEEEETTTTEEEEEEEEEECSC
T ss_pred eEEEEecCccCCcccHHHHHHHHHhcCCChH-----HHHHHHHHHHHHhCCCcc-cCCcccCChhhhhhhhhHHHhccCC
Confidence 356777777777778888875421 11111 001112334445554443 1234689999999999999999999
Q ss_pred hhhcccccce-e----ccc-ccccEEEEEe
Q psy845 649 KKKKKSGVNI-T----RPV-TSCDKVLVMD 672 (677)
Q Consensus 649 ~IL~~~~~TI-L----sTI-~~aDrIlVLd 672 (677)
+++...+-+. . ..+ ..+|..++++
T Consensus 196 ~ilIlDep~~~~d~~~~~l~~~~D~~I~V~ 225 (312)
T 3aez_A 196 DILILEGLNVLQTGPTLMVSDLFDFSLYVD 225 (312)
T ss_dssp SEEEEECTTTTCCCSSCCGGGGCSEEEEEE
T ss_pred CEEEECCccccCCcchHHHHHhcCcEEEEE
Confidence 9997766653 2 122 3367666664
No 69
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.71 E-value=2.4e-17 Score=173.32 Aligned_cols=217 Identities=13% Similarity=0.114 Sum_probs=117.8
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccccc-------HH
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE-------LE 508 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~-------~~ 508 (677)
+++++| -.+|+ +++++++++| ..+|+||||||||||+++|..+.....|.- ..+...+++- ..
T Consensus 5 ~L~i~n-fr~~~-------~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s-~r~~~~~~li~~g~~~~~~ 74 (322)
T 1e69_A 5 KLYLKG-FKSFG-------RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKE-LRASEKFDMIFAGSENLPP 74 (322)
T ss_dssp EEEEES-BTTBC-------SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC-----------CCTTBCCCBTTBCC
T ss_pred EEEEeC-ceeec-------CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhh-cccccHHHhhccCccCCCC
Confidence 477777 23453 2468888899 999999999999999999997752222110 0000000000 00
Q ss_pred HhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchh
Q psy845 509 TLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIR 587 (677)
Q Consensus 509 ~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIr 587 (677)
.-.-.+...+++.. ..-.+.+ +++.+++|+++++|.+++..+..++++.+++.||+..++ +|++.
T Consensus 75 ~~~~~v~~~f~~~~-~~~~i~r-------------~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~ 140 (322)
T 1e69_A 75 AGSAYVELVFEENG-EEITVAR-------------ELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQID 140 (322)
T ss_dssp CSEEEEEEEEESSS-CEEEEEE-------------EEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHH
T ss_pred CceEEEEEEEEeCC-eEEEEEE-------------EEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHH
Confidence 00001111111100 0000000 123455678899998887778888888999999998776 89999
Q ss_pred hccccCCC----C------------ChHHHHHHHHHc------------cch-hhHhhhhcccCCCC--------CCCCC
Q psy845 588 YNLDPFGR----C------------HDTELWDALEKS------------HLK-SKVVTMRSKLDSDV--------QGDQL 630 (677)
Q Consensus 588 ENI~~~~~----~------------sdeeI~~Al~~a------------~l~-efI~~LP~GldT~v--------~G~~L 630 (677)
+|+....+ . +.+++.+..+.. .+. +..+.++.|+++.+ ...+|
T Consensus 141 ~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l 220 (322)
T 1e69_A 141 RIVNASPEELRLESSKHPTSLVPRGSYQRVNESFNRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLL 220 (322)
T ss_dssp HHHTC---------------------CHHHHHHHHHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGS
T ss_pred HHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhC
Confidence 98853211 0 011122221110 000 01123455666542 35699
Q ss_pred ChHHHHHHHHHHHHh----ccchhh-----------------------cccccc-e--e---cccccccEE--EEEeCCe
Q psy845 631 SLGEKQLLCLARALL----RKTKKK-----------------------KKSGVN-I--T---RPVTSCDKV--LVMDNGQ 675 (677)
Q Consensus 631 SGGQRQRIaIARALL----r~p~IL-----------------------~~~~~T-I--L---sTI~~aDrI--lVLd~Gr 675 (677)
|||||||++||||+. ++|+++ ..++.| | . ...+.||++ ++|++|+
T Consensus 221 S~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~ 300 (322)
T 1e69_A 221 SGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGV 300 (322)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSC
T ss_pred CHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCE
Confidence 999999999999996 677765 113445 2 2 234569987 8899986
Q ss_pred e
Q psy845 676 A 676 (677)
Q Consensus 676 I 676 (677)
-
T Consensus 301 s 301 (322)
T 1e69_A 301 S 301 (322)
T ss_dssp E
T ss_pred E
Confidence 3
No 70
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.70 E-value=4.9e-18 Score=193.82 Aligned_cols=164 Identities=23% Similarity=0.234 Sum_probs=122.4
Q ss_pred EeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccC
Q psy845 440 KNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQ 519 (677)
Q Consensus 440 knVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q 519 (677)
+|++++|++. ..+|+|+| ++++||++
T Consensus 95 ~~ls~~yg~~-~~~l~~vs-~i~~Ge~~---------------------------------------------------- 120 (607)
T 3bk7_A 95 EDCVHRYGVN-AFVLYRLP-IVKDGMVV---------------------------------------------------- 120 (607)
T ss_dssp GSEEEECSTT-CCEEECCC-CCCTTSEE----------------------------------------------------
T ss_pred CCeEEEECCC-CeeeCCCC-CCCCCCEE----------------------------------------------------
Confidence 8999999654 25899999 99999843
Q ss_pred CccccccccccCCCCCchhHHHHHHhhhhccccc---------cccccchhhhhHH--HHhhhccccccccc----cccc
Q psy845 520 DPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQI---------KIDDFDIASVELE--TLRSRLSVIPQDPV----LFNG 584 (677)
Q Consensus 520 ~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i---------~~~~~~~~~~~~~--~LR~~I~~V~Qd~~----LFsg 584 (677)
+.+|.||||||||+++|.|+.+|++|++ .++|.++.+.... ..+..+++++|+.. ++.+
T Consensus 121 ------~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 194 (607)
T 3bk7_A 121 ------GIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKG 194 (607)
T ss_dssp ------EEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCS
T ss_pred ------EEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccc
Confidence 5689999999999999999999999997 5677776553222 22346778887643 4457
Q ss_pred chhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh-------------
Q psy845 585 TIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------- 651 (677)
Q Consensus 585 TIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------- 651 (677)
|++||+... ...+++.++++..++.+...+ ...+||||||||++|||||+++|+++
T Consensus 195 tv~e~l~~~--~~~~~~~~~L~~lgL~~~~~~---------~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~ 263 (607)
T 3bk7_A 195 KVRELLKKV--DEVGKFEEVVKELELENVLDR---------ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQ 263 (607)
T ss_dssp BHHHHHHHT--CCSSCHHHHHHHTTCTTGGGS---------BGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHH
T ss_pred cHHHHhhhh--HHHHHHHHHHHHcCCCchhCC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH
Confidence 999998632 123457778888887654332 34689999999999999999999976
Q ss_pred -----------cccccce---ecc---cc-cccEEEEEeCC
Q psy845 652 -----------KKSGVNI---TRP---VT-SCDKVLVMDNG 674 (677)
Q Consensus 652 -----------~~~~~TI---LsT---I~-~aDrIlVLd~G 674 (677)
...+.|| .|. +. -||||++|++|
T Consensus 264 ~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 264 RLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 1236663 332 22 38999999975
No 71
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.70 E-value=1.1e-19 Score=200.16 Aligned_cols=168 Identities=10% Similarity=0.135 Sum_probs=118.3
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCE---ecccccHHHhh
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDF---DIASVELETLR 511 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~---dI~~l~~~~~~ 511 (677)
+.++++|+++.|+.+ ..+|+++ |++++||++||+||||||||||+++|+|+++|+.|.|.++|+ +++++..
T Consensus 130 ~~l~~~~v~~~~~tg-~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~---- 203 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG-VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIE---- 203 (438)
T ss_dssp CTTTSCCCCSBCCCS-CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHH----
T ss_pred CceEEeccceecCCC-ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHH----
Confidence 468899999999743 3699999 999999999999999999999999999999999999999998 4433200
Q ss_pred hhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccc--ccccccchhhc
Q psy845 512 SRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQD--PVLFNGTIRYN 589 (677)
Q Consensus 512 ~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd--~~LFsgTIrEN 589 (677)
...+...+++.+++|+|+ +.....|+.+|
T Consensus 204 -------------------------------------------------~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~ 234 (438)
T 2dpy_A 204 -------------------------------------------------NILGPDGRARSVVIAAPADVSPLLRMQGAAY 234 (438)
T ss_dssp -------------------------------------------------TTTHHHHHHTEEEEEECTTSCHHHHHHHHHH
T ss_pred -------------------------------------------------hhccccccCceEEEEECCCCCHHHHHHHHHH
Confidence 000245678889999984 33446788888
Q ss_pred cccCCCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh------------------
Q psy845 590 LDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK------------------ 651 (677)
Q Consensus 590 I~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL------------------ 651 (677)
+... .|.... +..++.++++ ...+||+|| ||++|| +++|++.
T Consensus 235 ~~~~-----ae~~~~-~~~~v~~~ld----------~l~~lS~g~-qrvslA---l~~p~~t~glD~~~~~~l~~ll~r~ 294 (438)
T 2dpy_A 235 ATRI-----AEDFRD-RGQHVLLIMD----------SLTRYAMAQ-REIALA---IGEPPATKGYPPSVFAKLPALVERA 294 (438)
T ss_dssp HHHH-----HHHHHT-TTCEEEEEEE----------CHHHHHHHH-HHHHHH---TTCCCCSSSCCTTHHHHHHHHHTTC
T ss_pred HHHH-----HHHHHh-CCCCHHHHHH----------hHHHHHHHH-HHHHHH---hCCCcccccCCHHHHHHHHHHHHHH
Confidence 7531 111110 0111111111 356899999 999999 8888642
Q ss_pred cc---c-cc-----ce---ecc--cccccEEEEEeCCeeC
Q psy845 652 KK---S-GV-----NI---TRP--VTSCDKVLVMDNGQAL 677 (677)
Q Consensus 652 ~~---~-~~-----TI---LsT--I~~aDrIlVLd~GrIV 677 (677)
.. + |+ |+ .|. ...||++++|++|+|+
T Consensus 295 ~~~~~~~GsiT~~~tVlv~tHdl~~~iad~v~~l~dG~Iv 334 (438)
T 2dpy_A 295 GNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIV 334 (438)
T ss_dssp SCCSTTSCEEEEEEEEECSSSCSCCHHHHHHHHHSSEEEE
T ss_pred HhccCCCCcccceeEEEEeCCCccchhhceEEEEeCcEEE
Confidence 12 1 43 43 222 3448999999999974
No 72
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.69 E-value=5.6e-18 Score=190.73 Aligned_cols=167 Identities=22% Similarity=0.228 Sum_probs=121.0
Q ss_pred EEE-EeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcc
Q psy845 437 IKF-KNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515 (677)
Q Consensus 437 I~f-knVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~ 515 (677)
.++ +||+++|++. ..+|+|+| ++++||++
T Consensus 21 ~~~~~~ls~~yg~~-~~~l~~vs-~i~~Ge~~------------------------------------------------ 50 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN-AFVLYRLP-VVKEGMVV------------------------------------------------ 50 (538)
T ss_dssp ---CCCEEEECSTT-CCEEECCC-CCCTTSEE------------------------------------------------
T ss_pred hhHhcCcEEEECCc-cccccCcC-cCCCCCEE------------------------------------------------
Confidence 345 5999999753 25899999 99999944
Q ss_pred cccCCccccccccccCCCCCchhHHHHHHhhhhccccc---------cccccchhhhhHHH--Hhhhcccccccccc---
Q psy845 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQI---------KIDDFDIASVELET--LRSRLSVIPQDPVL--- 581 (677)
Q Consensus 516 ~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i---------~~~~~~~~~~~~~~--LR~~I~~V~Qd~~L--- 581 (677)
+.+|.||||||||+++|.|+.+|++|++ .++|.++....... .+..+++++|+..+
T Consensus 51 ----------~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~ 120 (538)
T 1yqt_A 51 ----------GIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPK 120 (538)
T ss_dssp ----------EEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGG
T ss_pred ----------EEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcch
Confidence 5689999999999999999999999997 56777766532222 23467888887544
Q ss_pred -cccchhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh---------
Q psy845 582 -FNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK--------- 651 (677)
Q Consensus 582 -FsgTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL--------- 651 (677)
+.+|++||+.... ..+++.++++..++.+... . ...+||||||||++|||||+++|+++
T Consensus 121 ~~~~~v~e~~~~~~--~~~~~~~~l~~lgl~~~~~-------~--~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~L 189 (538)
T 1yqt_A 121 AVKGKVIELLKKAD--ETGKLEEVVKALELENVLE-------R--EIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYL 189 (538)
T ss_dssp GCCSBHHHHHHHHC--SSSCHHHHHHHTTCTTTTT-------S--BGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTC
T ss_pred hhhccHHHHHhhhh--HHHHHHHHHHHcCCChhhh-------C--ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 3468999885311 1345677888887754322 1 35689999999999999999999976
Q ss_pred ---------------cccccce---ecc---cc-cccEEEEEeCC
Q psy845 652 ---------------KKSGVNI---TRP---VT-SCDKVLVMDNG 674 (677)
Q Consensus 652 ---------------~~~~~TI---LsT---I~-~aDrIlVLd~G 674 (677)
...++|| .|. +. -||||++|++|
T Consensus 190 D~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 190 DIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 1235663 232 22 39999999875
No 73
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.69 E-value=7.9e-20 Score=193.98 Aligned_cols=58 Identities=19% Similarity=0.379 Sum_probs=54.1
Q ss_pred EEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEe
Q psy845 439 FKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 501 (677)
Q Consensus 439 fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~d 501 (677)
++|++| | +++++++|+++++|+.++|+|||||||||++++|+|+++|++|.|.++|.+
T Consensus 151 ~~~v~f-y----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~ 208 (330)
T 2pt7_A 151 YNLLDN-K----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE 208 (330)
T ss_dssp TTTSTT-H----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC
T ss_pred cCchhh-H----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee
Confidence 778888 7 259999999999999999999999999999999999999999999999864
No 74
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.67 E-value=3.6e-17 Score=186.73 Aligned_cols=141 Identities=18% Similarity=0.186 Sum_probs=97.7
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccc-----------cccccchhhhhHHHHhhhcccc--ccc----cccccc---c
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQI-----------KIDDFDIASVELETLRSRLSVI--PQD----PVLFNG---T 585 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i-----------~~~~~~~~~~~~~~LR~~I~~V--~Qd----~~LFsg---T 585 (677)
+.+|.||||||||+++|.|+.+|++|+| +++|.+..+.....+++.+..+ +|. +..+.+ +
T Consensus 107 ~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (608)
T 3j16_B 107 GLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQK 186 (608)
T ss_dssp EEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSH
T ss_pred EEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhH
Confidence 5689999999999999999999999998 5666666555444555555432 222 211212 4
Q ss_pred hhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh--------------
Q psy845 586 IRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK-------------- 651 (677)
Q Consensus 586 IrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL-------------- 651 (677)
+.+++....+..++++.++++..++.+...+ ...+||||||||++|||||+++|+++
T Consensus 187 v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~ 257 (608)
T 3j16_B 187 VGELLKLRMEKSPEDVKRYIKILQLENVLKR---------DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQR 257 (608)
T ss_dssp HHHHHHHHCCSCHHHHHHHHHHHTCTGGGGS---------CTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHH
T ss_pred HHHHHhhhhhhHHHHHHHHHHHcCCcchhCC---------ChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHH
Confidence 5555533223345678888888887654332 35799999999999999999999976
Q ss_pred ----------cccccce---ecc---c-ccccEEEEEeCCe
Q psy845 652 ----------KKSGVNI---TRP---V-TSCDKVLVMDNGQ 675 (677)
Q Consensus 652 ----------~~~~~TI---LsT---I-~~aDrIlVLd~Gr 675 (677)
..+++|| .|. + .-||||+||++|.
T Consensus 258 ~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~ 298 (608)
T 3j16_B 258 LNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP 298 (608)
T ss_dssp HHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 1235663 332 2 2399999999865
No 75
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.67 E-value=1.3e-18 Score=185.79 Aligned_cols=141 Identities=13% Similarity=0.106 Sum_probs=100.7
Q ss_pred cccceeeEEeC--CcEEEEEcCCCCChHHHHHHHhcCCCCCc----cEEEEC----CEecccccHHHhhhhcccccCCcc
Q psy845 453 VLANVSFRINH--GENIGIVGRTGAGKSSLLVALFRLVELSS----GQIKID----DFDIASVELETLRSRLSVIPQDPV 522 (677)
Q Consensus 453 VLknISl~I~~--GE~VAIVGpSGSGKSTLi~LL~r~y~p~~----G~I~Id----G~dI~~l~~~~~~~~i~~v~q~~~ 522 (677)
+.+.|++++++ |+++||+||||||||||+++|+|+++|++ |+|.++ |.++ .
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~------------------ 217 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-A------------------ 217 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-S------------------
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-c------------------
Confidence 46789999999 99999999999999999999999999998 666543 2221 1
Q ss_pred ccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCC-CCChHHH
Q psy845 523 LFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG-RCHDTEL 601 (677)
Q Consensus 523 lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~-~~sdeeI 601 (677)
.+.+++ ++|++++|++.+|++|++||+.++. +..+...
T Consensus 218 ----------------------------------------~~~~~~-~~I~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~ 256 (365)
T 1lw7_A 218 ----------------------------------------MQYSDY-PQMALGHQRYIDYAVRHSHKIAFIDTDFITTQA 256 (365)
T ss_dssp ----------------------------------------SCTTTH-HHHHHHHHHHHHHHHHHCSSEEEESSCHHHHHH
T ss_pred ----------------------------------------CChhHH-HHHHHHHHHHHHHHHhccCCEEEEeCCchHHHH
Confidence 123334 5699999999999999999997643 3345556
Q ss_pred HHHHHHccchhhHhhhhcc--cCCCC----------CCCCCChHHHHHHHHHHHH---hc--cchhhcc
Q psy845 602 WDALEKSHLKSKVVTMRSK--LDSDV----------QGDQLSLGEKQLLCLARAL---LR--KTKKKKK 653 (677)
Q Consensus 602 ~~Al~~a~l~efI~~LP~G--ldT~v----------~G~~LSGGQRQRIaIARAL---Lr--~p~IL~~ 653 (677)
+......+...++.+++.+ ++..+ +|.++|+||+||.+++|++ ++ +++++..
T Consensus 257 ~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ilil 325 (365)
T 1lw7_A 257 FCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEI 325 (365)
T ss_dssp HHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEE
T ss_pred HHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEe
Confidence 6666666777788887765 43311 4567999999999999999 66 6666633
No 76
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.65 E-value=3.2e-19 Score=183.50 Aligned_cols=175 Identities=19% Similarity=0.210 Sum_probs=102.4
Q ss_pred EEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCC-ccEEEECCEecccccHHHhhhhccc
Q psy845 438 KFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS-SGQIKIDDFDIASVELETLRSRLSV 516 (677)
Q Consensus 438 ~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~-~G~I~IdG~dI~~l~~~~~~~~i~~ 516 (677)
+++|+++. ++|+|+| +++|+.++|+|||||||||++++|+|+++|+ +|+|.++|.++..+ .+...++
T Consensus 7 ~l~~l~~~------~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~----~~~~~~~ 74 (261)
T 2eyu_A 7 EFKKLGLP------DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYV----FKHKKSI 74 (261)
T ss_dssp CGGGSSCC------THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSC----CCCSSSE
T ss_pred ChHHCCCH------HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceee----cCCccee
Confidence 45566642 4999999 8999999999999999999999999999998 99999999887544 1333455
Q ss_pred ccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCC
Q psy845 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRC 596 (677)
Q Consensus 517 v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~ 596 (677)
++|+. ++ -...++-.+|.+...-+---|.+|-+. +.+..+..+....+...++.-| .
T Consensus 75 v~q~~------~g---l~~~~l~~~la~aL~~~p~illlDEp~----D~~~~~~~l~~~~~g~~vl~t~----------H 131 (261)
T 2eyu_A 75 VNQRE------VG---EDTKSFADALRAALREDPDVIFVGEMR----DLETVETALRAAETGHLVFGTL----------H 131 (261)
T ss_dssp EEEEE------BT---TTBSCHHHHHHHHHHHCCSEEEESCCC----SHHHHHHHHHHHHTTCEEEEEE----------C
T ss_pred eeHHH------hC---CCHHHHHHHHHHHHhhCCCEEEeCCCC----CHHHHHHHHHHHccCCEEEEEe----------C
Confidence 55521 11 001233333333322222234444442 2222222111111111111000 0
Q ss_pred ChHHHHHHHHH-ccch------hhHhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhccchh
Q psy845 597 HDTELWDALEK-SHLK------SKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTKK 650 (677)
Q Consensus 597 sdeeI~~Al~~-a~l~------efI~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~p~I 650 (677)
+.+ ..++++. ..+. ..-..+++++++.+ ++.++|+| ||+++||+++.+|++
T Consensus 132 ~~~-~~~~~dri~~l~~~~~~~~~~~~l~~~l~~vi~qrl~~~~~G--~R~~i~e~l~~~~~i 191 (261)
T 2eyu_A 132 TNT-AIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQRLLPKIGG--GRVLAYGLLIPNTAI 191 (261)
T ss_dssp CSS-HHHHHHHHHHTSCGGGHHHHHHHHHHHEEEEEEEEEECCSSS--SSEEEEEEECCCHHH
T ss_pred cch-HHHHHHHHhhhcCccccchHHHHHHHHhhEEEEEEeEecCCC--CEEEEEEEecCCHHH
Confidence 001 1112221 1111 11235788999988 78899999 999999999999998
No 77
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.65 E-value=1.6e-18 Score=179.13 Aligned_cols=111 Identities=16% Similarity=0.162 Sum_probs=64.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHh
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRL 545 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~ 545 (677)
++|||||||||||||+|+|+|+..|++|+|.++|.++..-
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~---------------------------------------- 43 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT---------------------------------------- 43 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCC----------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc----------------------------------------
Confidence 6899999999999999999999999999999999876332
Q ss_pred hhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCC
Q psy845 546 VELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSD 624 (677)
Q Consensus 546 ~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~ 624 (677)
..++.+++++|++.++. .|+.||+.++.....++.++.++.....++...++
T Consensus 44 ---------------------~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~------ 96 (270)
T 3sop_A 44 ---------------------VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLK------ 96 (270)
T ss_dssp ---------------------CSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHHHHHHHHHHHHHHH------
T ss_pred ---------------------eeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHHHHHHHHHHHhhhH------
Confidence 12467888888887774 59999997654332222222222222233333332
Q ss_pred CCCCCCChHHHHHHHHHHHHhc
Q psy845 625 VQGDQLSLGEKQLLCLARALLR 646 (677)
Q Consensus 625 v~G~~LSGGQRQRIaIARALLr 646 (677)
.+||||||||+++|||+..
T Consensus 97 ---~~LS~G~~qrv~iaRal~~ 115 (270)
T 3sop_A 97 ---EEVNIARKKRIPDTRVHCC 115 (270)
T ss_dssp ---HHSCTTCCSSCCCCSCCEE
T ss_pred ---HhcCcccchhhhhheeeee
Confidence 4799999999999999754
No 78
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.63 E-value=1.7e-17 Score=181.40 Aligned_cols=121 Identities=21% Similarity=0.180 Sum_probs=93.3
Q ss_pred CccccceeeEEeCCc--------------------EEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHh
Q psy845 451 PLVLANVSFRINHGE--------------------NIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL 510 (677)
Q Consensus 451 ~~VLknISl~I~~GE--------------------~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~ 510 (677)
+.+|+|+|+++++|| .+||+||||||||||+|+|+|+++|++|+|.++|.+.+
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 358999999999999 99999999999999999999999999999998886531
Q ss_pred hhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcc
Q psy845 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNL 590 (677)
Q Consensus 511 ~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI 590 (677)
| .++++|++...+.|+.||+
T Consensus 109 ----------------------------------------------------------~--~~~v~q~~~~~~ltv~D~~ 128 (413)
T 1tq4_A 109 ----------------------------------------------------------M--ERHPYKHPNIPNVVFWDLP 128 (413)
T ss_dssp ----------------------------------------------------------C--CCEEEECSSCTTEEEEECC
T ss_pred ----------------------------------------------------------e--eEEeccccccCCeeehHhh
Confidence 1 1567777654467888888
Q ss_pred ccCCCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChH--HHHHHHHHHHHhc----------cchhh
Q psy845 591 DPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLG--EKQLLCLARALLR----------KTKKK 651 (677)
Q Consensus 591 ~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGG--QRQRIaIARALLr----------~p~IL 651 (677)
.++. .++++.+.++..++.+. +..+ . +||| ||||++||||+.+ +|+++
T Consensus 129 g~~~--~~~~~~~~L~~~~L~~~--------~~~~--~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 129 GIGS--TNFPPDTYLEKMKFYEY--------DFFI--I-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSD 188 (413)
T ss_dssp CGGG--SSCCHHHHHHHTTGGGC--------SEEE--E-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHH
T ss_pred cccc--hHHHHHHHHHHcCCCcc--------CCeE--E-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCccc
Confidence 6542 23456777777776432 2211 2 8999 9999999999999 88766
No 79
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.62 E-value=4e-18 Score=183.64 Aligned_cols=133 Identities=17% Similarity=0.115 Sum_probs=98.5
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCC-ccEEEECCEecccccHHHhhhhcccccCCcccccccccc
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS-SGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGR 530 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~-~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~ 530 (677)
++|++++ +++|+.++|+|||||||||++++|+|+++|+ +|+|..+|.++. +
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~------------------------- 177 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y------------------------- 177 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S-------------------------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h-------------------------
Confidence 4678776 7999999999999999999999999999998 899977665442 1
Q ss_pred CCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccc-----cccccccchhhccccCCCC-------Ch
Q psy845 531 TGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQ-----DPVLFNGTIRYNLDPFGRC-------HD 598 (677)
Q Consensus 531 n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Q-----d~~LFsgTIrENI~~~~~~-------sd 598 (677)
.+|+++++|+| ++..|++++++|++...+. ++
T Consensus 178 ------------------------------------~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~illdE~~d~ 221 (372)
T 2ewv_A 178 ------------------------------------VFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFVGEMRDL 221 (372)
T ss_dssp ------------------------------------CCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEEEESCCCSH
T ss_pred ------------------------------------hhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEEEECCCCCH
Confidence 12345556666 6667777777777543332 45
Q ss_pred HHHHHHHHHccchhh-----------------------------HhhhhcccCCCC--CCCCCChHHHHHHHHHHHHhcc
Q psy845 599 TELWDALEKSHLKSK-----------------------------VVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRK 647 (677)
Q Consensus 599 eeI~~Al~~a~l~ef-----------------------------I~~LP~GldT~v--~G~~LSGGQRQRIaIARALLr~ 647 (677)
++++++++.++.... ...+++++++.+ ++.++|+| ||+++||+++.+
T Consensus 222 e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~qrl~~~~~G--~R~~i~e~l~~~ 299 (372)
T 2ewv_A 222 ETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQRLLPKIGG--GRVLAYELLIPN 299 (372)
T ss_dssp HHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEEEEEECSSS--SEEEEEEECCCC
T ss_pred HHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEEEeEecCCC--CEEEEEEEeeCC
Confidence 556666666543211 123578899888 67888999 899999999999
Q ss_pred chh
Q psy845 648 TKK 650 (677)
Q Consensus 648 p~I 650 (677)
|++
T Consensus 300 ~~i 302 (372)
T 2ewv_A 300 TAI 302 (372)
T ss_dssp SHH
T ss_pred HHH
Confidence 998
No 80
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.60 E-value=4.3e-17 Score=174.39 Aligned_cols=67 Identities=15% Similarity=0.138 Sum_probs=60.5
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA 503 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~ 503 (677)
.-++.+|+++.|+.+ ..+|+++ |+|++||++||+||||||||||+++|+|+.+|+.|.|.++|.+.+
T Consensus 44 ~~i~~~~l~~~~~tg-~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ 110 (347)
T 2obl_A 44 DPLLRQVIDQPFILG-VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGR 110 (347)
T ss_dssp CSTTCCCCCSEECCS-CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHH
T ss_pred CCeeecccceecCCC-CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHH
Confidence 457889999999744 3699999 999999999999999999999999999999999999999987643
No 81
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.56 E-value=1.7e-15 Score=144.97 Aligned_cols=30 Identities=23% Similarity=0.438 Sum_probs=28.5
Q ss_pred ceeeEEeCCcEEEEEcCCCCChHHHHHHHh
Q psy845 456 NVSFRINHGENIGIVGRTGAGKSSLLVALF 485 (677)
Q Consensus 456 nISl~I~~GE~VAIVGpSGSGKSTLi~LL~ 485 (677)
|+||++++||.++|+||||||||||++++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHc
Confidence 689999999999999999999999999965
No 82
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.55 E-value=1.8e-17 Score=185.39 Aligned_cols=57 Identities=14% Similarity=0.226 Sum_probs=51.1
Q ss_pred EeCCCCCccccceee-EEeCCcEEEEEcCCCCChHHHHHH--HhcCCCCCccEEEECCEec
Q psy845 445 RYRDNWPLVLANVSF-RINHGENIGIVGRTGAGKSSLLVA--LFRLVELSSGQIKIDDFDI 502 (677)
Q Consensus 445 sY~~~~~~VLknISl-~I~~GE~VAIVGpSGSGKSTLi~L--L~r~y~p~~G~I~IdG~dI 502 (677)
+|+.+ .++|+|+|+ .+++||.++|+||||||||||++. +.|+.+|++|+|+++|.+.
T Consensus 20 ~~~~g-~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~ 79 (525)
T 1tf7_A 20 KMRTM-IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET 79 (525)
T ss_dssp EECCC-CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred cccCC-chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC
Confidence 45544 469999999 999999999999999999999999 7899999999999999873
No 83
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.54 E-value=1.9e-16 Score=155.18 Aligned_cols=127 Identities=16% Similarity=0.120 Sum_probs=87.1
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHH
Q psy845 461 INHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLV 540 (677)
Q Consensus 461 I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~ 540 (677)
+++|++++|+||||||||||+++|+|+++... |.++... |
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~------~~~v~~t-------------------------------t--- 40 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIF------GFSVSHT-------------------------------T--- 40 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTE------EECCCEE-------------------------------C---
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhc------eeeeeee-------------------------------c---
Confidence 36899999999999999999999999986221 1222111 0
Q ss_pred HHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHHHHccchhhHhhhhcc
Q psy845 541 ALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSK 620 (677)
Q Consensus 541 ~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~G 620 (677)
-+|++|+ +||.++...+.+++|+.+ +|++++|++++++|+ ++ .++++++++++..+..-+ +-.|+|
T Consensus 41 -----r~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~~~n~-~g--~~~~~i~~~~~~~~~~~~-~~~~~g 106 (198)
T 1lvg_A 41 -----RNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEFSGNL-YG--TSKEAVRAVQAMNRICVL-DVDLQG 106 (198)
T ss_dssp -----SCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEETTEE-EE--EEHHHHHHHHHTTCEEEE-ECCHHH
T ss_pred -----cCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeeecCcc-CC--CCHHHHHHHHHcCCcEEE-ECCHHH
Confidence 1355666 577888777889999876 799999999999999 43 367889999886543322 224667
Q ss_pred cCCCCCCCCCChHHHHHHHHHH-HHhccchhh
Q psy845 621 LDSDVQGDQLSLGEKQLLCLAR-ALLRKTKKK 651 (677)
Q Consensus 621 ldT~v~G~~LSGGQRQRIaIAR-ALLr~p~IL 651 (677)
+++... . ++ .|| +++++|++.
T Consensus 107 ~~~~~~-~--------~~-~~~~~~l~~p~~~ 128 (198)
T 1lvg_A 107 VRSIKK-T--------DL-CPIYIFVQPPSLD 128 (198)
T ss_dssp HHHHTT-S--------SC-CCEEEEEECSCHH
T ss_pred HHHHHh-c--------CC-CcEEEEEeCCCHH
Confidence 766431 1 12 677 788888755
No 84
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.53 E-value=1.3e-16 Score=167.55 Aligned_cols=129 Identities=13% Similarity=0.056 Sum_probs=88.5
Q ss_pred ccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCC
Q psy845 454 LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGA 533 (677)
Q Consensus 454 LknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~ 533 (677)
++++||++++||.+++||||||||||+++.|+|++.|++|+|.++|.|+.....
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a-------------------------- 143 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAA-------------------------- 143 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHH--------------------------
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhH--------------------------
Confidence 456889999999999999999999999999999999999999999988755410
Q ss_pred CCchhHHHHHHhhhhccccccccccchhhhhHHHH--hhhccccccccc-cc-ccchhhccccCC-CCChHHHHHHHHHc
Q psy845 534 GKSSLLVALFRLVELSSGQIKIDDFDIASVELETL--RSRLSVIPQDPV-LF-NGTIRYNLDPFG-RCHDTELWDALEKS 608 (677)
Q Consensus 534 ~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~L--R~~I~~V~Qd~~-LF-sgTIrENI~~~~-~~sdeeI~~Al~~a 608 (677)
...++.+ |.++++++|++. ++ ..|++||+.... ...+. ..++.+
T Consensus 144 ----------------------------~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~~~~~~~d~---~lldt~ 192 (302)
T 3b9q_A 144 ----------------------------SDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDV---VLCDTS 192 (302)
T ss_dssp ----------------------------HHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHHHHHTTCSE---EEECCC
T ss_pred ----------------------------HHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHHHHHcCCcc---hHHhcC
Confidence 0022333 457889999887 55 568889885321 00010 012222
Q ss_pred cchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccch--hh
Q psy845 609 HLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTK--KK 651 (677)
Q Consensus 609 ~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~--IL 651 (677)
|+.+.... ...+|| |||++||||+..+|+ ++
T Consensus 193 gl~~~~~~---------~~~eLS---kqr~~iaral~~~P~e~lL 225 (302)
T 3b9q_A 193 GRLHTNYS---------LMEELI---ACKKAVGKIVSGAPNEILL 225 (302)
T ss_dssp CCSSCCHH---------HHHHHH---HHHHHHHTTSTTCCSEEEE
T ss_pred CCCcchhH---------HHHHHH---HHHHHHHHhhccCCCeeEE
Confidence 22221111 123578 999999999999998 55
No 85
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.53 E-value=6.4e-15 Score=158.13 Aligned_cols=32 Identities=41% Similarity=0.500 Sum_probs=28.9
Q ss_pred cccceeeEEeCCcEEEEEcCCCCChHHHHHHHh
Q psy845 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALF 485 (677)
Q Consensus 453 VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~ 485 (677)
.++++++++++| ..+|+||||||||||+++|+
T Consensus 13 ~~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 13 GLKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp TEEEEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred CccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 356788999999 78899999999999999998
No 86
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.50 E-value=1.5e-15 Score=147.48 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=27.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccc
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 504 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~ 504 (677)
+++|+||||||||||+++|+|++. |.++|.+..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~ 35 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEE 35 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhh
Confidence 689999999999999999999984 5566655433
No 87
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.49 E-value=6.5e-15 Score=142.29 Aligned_cols=154 Identities=15% Similarity=0.209 Sum_probs=83.1
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCC-----CCCccEEEECC-------Eeccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV-----ELSSGQIKIDD-------FDIAS 504 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y-----~p~~G~I~IdG-------~dI~~ 504 (677)
++++|++|+|+. +++++ |++++|++++++|++|||||||++.|+|.. .|+.|.+...+ ..+.+
T Consensus 4 l~~~~~~~~~~~---~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~D 78 (210)
T 1pui_A 4 LNYQQTHFVMSA---PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVD 78 (210)
T ss_dssp -------CEEEE---SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEE
T ss_pred hhhhhhhheeec---CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEE
Confidence 789999999962 58888 899999999999999999999999999998 78888765422 11111
Q ss_pred ccHHHhhhhcccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc
Q psy845 505 VELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG 584 (677)
Q Consensus 505 l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg 584 (677)
. .|... .+......+.+|+.++.+.|+....++
T Consensus 79 t--------------------------------------------~G~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (210)
T 1pui_A 79 L--------------------------------------------PGYGY---AEVPEEMKRKWQRALGEYLEKRQSLQG 111 (210)
T ss_dssp C--------------------------------------------CCCC---------CCHHHHHHHHHHHHHHCTTEEE
T ss_pred C--------------------------------------------cCCcc---cccCHHHHHHHHHHHHHHHHhhhcccE
Confidence 1 01000 000111234567777777776544443
Q ss_pred -chhhccccCCCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHH-HHHHHHHhccchh
Q psy845 585 -TIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQL-LCLARALLRKTKK 650 (677)
Q Consensus 585 -TIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQR-IaIARALLr~p~I 650 (677)
.+..|+.......++++.+.++..++...+ ..+ +...+|+||||| +..||+++++|+.
T Consensus 112 ~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~------v~n--K~D~~s~~~~~~~~~~~~~~~~~~~~ 171 (210)
T 1pui_A 112 LVVLMDIRHPLKDLDQQMIEWAVDSNIAVLV------LLT--KADKLASGARKAQLNMVREAVLAFNG 171 (210)
T ss_dssp EEEEEETTSCCCHHHHHHHHHHHHTTCCEEE------EEE--CGGGSCHHHHHHHHHHHHHHHGGGCS
T ss_pred EEEEEECCCCCchhHHHHHHHHHHcCCCeEE------EEe--cccCCCchhHHHHHHHHHHHHHhcCC
Confidence 445555422111223344444332221100 011 455789999999 8999999998864
No 88
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.48 E-value=8.2e-16 Score=165.35 Aligned_cols=128 Identities=13% Similarity=0.062 Sum_probs=89.2
Q ss_pred cceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCC
Q psy845 455 ANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAG 534 (677)
Q Consensus 455 knISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~ 534 (677)
+++||++++|+++++||||||||||+++.|+|++.|++|+|.++|.|+.....
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a--------------------------- 200 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAA--------------------------- 200 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHH---------------------------
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccch---------------------------
Confidence 45788999999999999999999999999999999999999999988755310
Q ss_pred CchhHHHHHHhhhhccccccccccchhhhhHHHH--hhhccccccccc-cc-ccchhhccccCC-CCChHHHHHHHHHcc
Q psy845 535 KSSLLVALFRLVELSSGQIKIDDFDIASVELETL--RSRLSVIPQDPV-LF-NGTIRYNLDPFG-RCHDTELWDALEKSH 609 (677)
Q Consensus 535 ~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~L--R~~I~~V~Qd~~-LF-sgTIrENI~~~~-~~sdeeI~~Al~~a~ 609 (677)
...++.+ |.++++++|++. ++ ..|++||+.... +..+. ..++.+|
T Consensus 201 ---------------------------~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~~~~~~d~---~lldt~G 250 (359)
T 2og2_A 201 ---------------------------SDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDV---VLCDTSG 250 (359)
T ss_dssp ---------------------------HHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHHHHHTTCSE---EEEECCC
T ss_pred ---------------------------hHHHHHHHHhcCeEEEEecccccChhhhHHHHHHHHHhCCCHH---HHHHhcC
Confidence 0022233 567889998886 54 568888885321 00010 0122222
Q ss_pred chhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccch--hh
Q psy845 610 LKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTK--KK 651 (677)
Q Consensus 610 l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~--IL 651 (677)
+.+.... ...+|| |||++||||+..+|+ ++
T Consensus 251 l~~~~~~---------~~~eLS---kqr~~iaral~~~P~e~lL 282 (359)
T 2og2_A 251 RLHTNYS---------LMEELI---ACKKAVGKIVSGAPNEILL 282 (359)
T ss_dssp CSSCCHH---------HHHHHH---HHHHHHHHHSTTCCSEEEE
T ss_pred CChhhhh---------HHHHHH---HHHHHHHHHHhcCCCceEE
Confidence 2221111 123578 999999999999998 55
No 89
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.48 E-value=1.8e-16 Score=159.69 Aligned_cols=38 Identities=29% Similarity=0.383 Sum_probs=26.1
Q ss_pred CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 451 PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 451 ~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
.++|+|+||++++|+++||+|||||||||++++|++++
T Consensus 12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46999999999999999999999999999999999976
No 90
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.43 E-value=1.1e-14 Score=139.36 Aligned_cols=43 Identities=23% Similarity=0.276 Sum_probs=38.3
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccc
Q psy845 460 RINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 504 (677)
Q Consensus 460 ~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~ 504 (677)
.+++|+.++|+|||||||||++++|++. |+.|.|.+||.++.+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~ 47 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWG 47 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhh
Confidence 4789999999999999999999999998 789999999877643
No 91
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.42 E-value=1.5e-15 Score=145.30 Aligned_cols=62 Identities=16% Similarity=0.259 Sum_probs=55.1
Q ss_pred EEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecc
Q psy845 439 FKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA 503 (677)
Q Consensus 439 fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~ 503 (677)
-+|++++|++ ..+++++||++++||.++|+||+|||||||+++|+|+. |++|+|.++|.++.
T Consensus 10 ~~~~~~~~g~--~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~ 71 (158)
T 1htw_A 10 DEFSMLRFGK--KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLV 71 (158)
T ss_dssp SHHHHHHHHH--HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCE
T ss_pred CHHHHHHHHH--HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeee
Confidence 3466777854 36999999999999999999999999999999999999 99999999998764
No 92
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.40 E-value=6.2e-14 Score=147.35 Aligned_cols=119 Identities=16% Similarity=0.128 Sum_probs=80.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHH
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVAL 542 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~ 542 (677)
+||+++|||||||||||+++.|+|++.|++|+|.++|.|+.....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a----------------------------------- 145 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAG----------------------------------- 145 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTT-----------------------------------
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhH-----------------------------------
Confidence 699999999999999999999999999999999999998754310
Q ss_pred HHhhhhccccccccccchhhhhHHHH--hhhcccccccccccc-cchhhccccCCCCChHHHHHHHHHccchhhHhhhhc
Q psy845 543 FRLVELSSGQIKIDDFDIASVELETL--RSRLSVIPQDPVLFN-GTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRS 619 (677)
Q Consensus 543 ~~~~~~~~g~i~~~~~~~~~~~~~~L--R~~I~~V~Qd~~LFs-gTIrENI~~~~~~sdeeI~~Al~~a~l~efI~~LP~ 619 (677)
......+ |.++++|+|++.++. .|++||+... +..+.+..+...+.
T Consensus 146 -------------------~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~------------~~~~~d~~llDt~G 194 (304)
T 1rj9_A 146 -------------------GTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM------------KARGYDLLFVDTAG 194 (304)
T ss_dssp -------------------THHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH------------HHHTCSEEEECCCC
T ss_pred -------------------HHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH------------HhCCCCEEEecCCC
Confidence 0022333 457888999887664 4677777421 11111111111111
Q ss_pred ccCCCCCCCCCChHHHHHHHHHHHHhccch
Q psy845 620 KLDSDVQGDQLSLGEKQLLCLARALLRKTK 649 (677)
Q Consensus 620 GldT~v~G~~LSGGQRQRIaIARALLr~p~ 649 (677)
..+. ....++..++||.+||||+..+|+
T Consensus 195 ~~~~--~~~~~~eLs~~r~~iaRal~~~P~ 222 (304)
T 1rj9_A 195 RLHT--KHNLMEELKKVKRAIAKADPEEPK 222 (304)
T ss_dssp CCTT--CHHHHHHHHHHHHHHHHHCTTCCS
T ss_pred CCCc--hHHHHHHHHHHHHHHHHhhcCCCC
Confidence 1111 112346677999999999999998
No 93
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.38 E-value=3.7e-15 Score=158.45 Aligned_cols=87 Identities=20% Similarity=0.209 Sum_probs=74.4
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccH----HHhhh
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL----ETLRS 512 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~----~~~~~ 512 (677)
|+.+|++++|.+ ..+|+++|+++++|++++|+||+|||||||++.|+|++.|++|+|.+.|.|+..... ...++
T Consensus 30 ie~~~~~~~~~~--~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~ 107 (337)
T 2qm8_A 30 AESRRADHRAAV--RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT 107 (337)
T ss_dssp HTCSSHHHHHHH--HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG
T ss_pred HeeCCcccccCh--HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh
Confidence 556677888853 359999999999999999999999999999999999999999999999999865321 24578
Q ss_pred hcccccCCccccc
Q psy845 513 RLSVIPQDPVLFN 525 (677)
Q Consensus 513 ~i~~v~q~~~lf~ 525 (677)
++++++|++.+|.
T Consensus 108 ~i~~v~q~~~~~~ 120 (337)
T 2qm8_A 108 RMARLAIDRNAFI 120 (337)
T ss_dssp GSTTGGGCTTEEE
T ss_pred hheeeccCccccc
Confidence 8999999988875
No 94
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.38 E-value=5.7e-16 Score=169.59 Aligned_cols=63 Identities=19% Similarity=0.220 Sum_probs=51.6
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA 503 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~ 503 (677)
++++|+++.|+. ..+|+++ +. ++|+.++|+|||||||||++++|+|+++|++|+|.++|.++.
T Consensus 144 ~~l~~Lg~~~~~--~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie 206 (418)
T 1p9r_A 144 LDLHSLGMTAHN--HDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIE 206 (418)
T ss_dssp CCGGGSCCCHHH--HHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCC
T ss_pred CCHHHcCCCHHH--HHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccch
Confidence 445566665532 2478887 54 899999999999999999999999999999999999987763
No 95
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.36 E-value=5.3e-15 Score=145.26 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=28.7
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhcCCCCC
Q psy845 461 INHGENIGIVGRTGAGKSSLLVALFRLVELS 491 (677)
Q Consensus 461 I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~ 491 (677)
.++|+++||+||||||||||+++|+|+++|+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~ 49 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ 49 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 4789999999999999999999999999864
No 96
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.35 E-value=7.5e-14 Score=150.09 Aligned_cols=49 Identities=27% Similarity=0.266 Sum_probs=37.2
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC-CCccEEEEC-CEe
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE-LSSGQIKID-DFD 501 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~-p~~G~I~Id-G~d 501 (677)
.-++++++. .+|++++++||||||||||+|+|+|... |..|+|.++ |.+
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g 254 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLG 254 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC---------
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCC
Confidence 357788875 4899999999999999999999999999 999999987 654
No 97
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.32 E-value=6.9e-15 Score=153.57 Aligned_cols=120 Identities=13% Similarity=0.013 Sum_probs=82.0
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHH
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVA 541 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~ 541 (677)
+++++|||+|+|||||||++++|.+++++. | .
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g-----------~------------------------------------ 60 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y-----------G------------------------------------ 60 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H-----------G------------------------------------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C-----------C------------------------------------
Confidence 357899999999999999999999988542 1 0
Q ss_pred HHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCC----CChHHHHHHHHHccchhhHhhh
Q psy845 542 LFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGR----CHDTELWDALEKSHLKSKVVTM 617 (677)
Q Consensus 542 ~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~----~sdeeI~~Al~~a~l~efI~~L 617 (677)
+ ++.+.+|+||+++|++++++|+.+... .+.....++.+...+.+++.++
T Consensus 61 ----------------------~----~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~~~l~~l 114 (290)
T 1odf_A 61 ----------------------G----EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQEVLNTI 114 (290)
T ss_dssp ----------------------G----GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHHHHHHHH
T ss_pred ----------------------C----CceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHHHHHHHh
Confidence 1 334556699999999999998743210 0000011223344567889999
Q ss_pred hcccCCC------C--CCCCCChHHHHHHHHH--HHHhccchhhcccccc
Q psy845 618 RSKLDSD------V--QGDQLSLGEKQLLCLA--RALLRKTKKKKKSGVN 657 (677)
Q Consensus 618 P~GldT~------v--~G~~LSGGQRQRIaIA--RALLr~p~IL~~~~~T 657 (677)
++|++|. + .+.++||||+||+++| |++ +|+++..+|.+
T Consensus 115 ~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~ 162 (290)
T 1odf_A 115 FNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWF 162 (290)
T ss_dssp TC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESS
T ss_pred hccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCcc
Confidence 9998763 2 5789999999999998 666 88888776665
No 98
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.28 E-value=3.3e-12 Score=150.46 Aligned_cols=121 Identities=17% Similarity=0.171 Sum_probs=73.2
Q ss_pred hhccccccccccchhh---hhHHHHhhhcccccccccccccchhhccccCCCCChHHHH-----HHHHHccchhhHhhhh
Q psy845 547 ELSSGQIKIDDFDIAS---VELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELW-----DALEKSHLKSKVVTMR 618 (677)
Q Consensus 547 ~~~~g~i~~~~~~~~~---~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~-----~Al~~a~l~efI~~LP 618 (677)
.+++|+++++|.++.+ ++.+++...+.=++|++.... + +...+.. .+.++. ++.+.. +.+..+
T Consensus 296 ~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~-~--~~~~~~~--~~~~i~~~i~~ei~~rl---~~L~~v- 366 (842)
T 2vf7_A 296 RQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGH-A--ERVKNRP--EQAIALQRMAADLVKRL---DVLLHL- 366 (842)
T ss_dssp CTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCS-T--TSSSSCS--SHHHHHHHHHHHHHHHH---HHHHHT-
T ss_pred CHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcc-c--chhhcch--hhHHHHHHHHHHHHHHH---HHHHhC-
Confidence 3578899999999999 466666666666666555332 1 1221111 111111 111111 123333
Q ss_pred cccCCC-C--CCCCCChHHHHHHHHHHHHhccch--hh------------------------cccccce------ecccc
Q psy845 619 SKLDSD-V--QGDQLSLGEKQLLCLARALLRKTK--KK------------------------KKSGVNI------TRPVT 663 (677)
Q Consensus 619 ~GldT~-v--~G~~LSGGQRQRIaIARALLr~p~--IL------------------------~~~~~TI------LsTI~ 663 (677)
|++.. . ...+||||||||++|||||.++|+ ++ ...|.|| +..++
T Consensus 367 -GL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~ 445 (842)
T 2vf7_A 367 -GLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIR 445 (842)
T ss_dssp -TCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHT
T ss_pred -CCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHH
Confidence 33321 2 467999999999999999999984 44 1235662 34566
Q ss_pred cccEEEEE------eCCeeC
Q psy845 664 SCDKVLVM------DNGQAL 677 (677)
Q Consensus 664 ~aDrIlVL------d~GrIV 677 (677)
.||+|++| ++|+++
T Consensus 446 ~aD~ii~lgpgaG~~~G~iv 465 (842)
T 2vf7_A 446 RADWLVDVGPEAGEKGGEIL 465 (842)
T ss_dssp TCSEEEEECSSSGGGCCSEE
T ss_pred hCCEEEEeCCCcccCCCEEE
Confidence 79999999 688764
No 99
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.27 E-value=6.6e-14 Score=147.25 Aligned_cols=132 Identities=19% Similarity=0.180 Sum_probs=86.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCC--------CCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCC
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLV--------ELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGK 535 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y--------~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~ 535 (677)
=+.++|+|++||||||++|.|+|.+ .|+.|+|.+||.++++.+ +.+.+ -.|||
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~--------------~~~~e---l~~gC-- 64 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRA--------------TQIKT---LTNGC-- 64 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTS--------------CEEEE---ETTSC--
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCC--------------CCEEE---ECCCc--
Confidence 3689999999999999999999998 789999999999886541 00000 01222
Q ss_pred chhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccc---cccccc-cccchhhccccCCCCChHHHHHHH------
Q psy845 536 SSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVI---PQDPVL-FNGTIRYNLDPFGRCHDTELWDAL------ 605 (677)
Q Consensus 536 ~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V---~Qd~~L-FsgTIrENI~~~~~~sdeeI~~Al------ 605 (677)
|-.+ ...++++.++++ +|++.+ |+.++.||...+. .+.+.+.+
T Consensus 65 -----------------icc~-------~~~~~~~~l~~l~~~~q~~~~~~~~~v~E~~~l~~---p~~~~~~~~~~~~~ 117 (318)
T 1nij_A 65 -----------------ICCS-------RSNELEDALLDLLDNLDKGNIQFDRLVIECTGMAD---PGPIIQTFFSHEVL 117 (318)
T ss_dssp -----------------EEEC-------TTSCHHHHHHHHHHHHHHTSCCCSEEEEEEETTCC---HHHHHHHHHHSHHH
T ss_pred -----------------eEEc-------ccHHHHHHHHHHHhHHhcCCCCCCEEEEeCCCCCC---HHHHHHHHhcCccc
Confidence 1110 123567788887 688764 7899999997532 12221111
Q ss_pred -HHc---------cchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 606 -EKS---------HLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 606 -~~a---------~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
+.. ++.++...+ .++|+|||||...+|+++.+++.+
T Consensus 118 ~~~~~l~~~l~~vd~~~~~~~~----------~~ls~g~~Q~~~ad~ill~k~dl~ 163 (318)
T 1nij_A 118 CQRYLLDGVIALVDAVHADEQM----------NQFTIAQSQVGYADRILLTKTDVA 163 (318)
T ss_dssp HHHEEEEEEEEEEETTTHHHHH----------HHCHHHHHHHHTCSEEEEECTTTC
T ss_pred cCeEEECCEEEEEEHHHHHHHH----------hhchHHHHHHHhCCEEEEECcccC
Confidence 111 121222211 268999999999999999887755
No 100
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.26 E-value=5.8e-13 Score=146.14 Aligned_cols=142 Identities=17% Similarity=0.159 Sum_probs=81.5
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcE--EEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhh
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGEN--IGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~--VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~ 513 (677)
.++.++ +++|++. + |+|+|+++++|+. +|||||||||||||+|+|+|+. ++|.++...
T Consensus 16 ~l~~~~-~~~y~~~--~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~-------- 75 (427)
T 2qag_B 16 TVPLAG-HVGFDSL--P-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHT-------- 75 (427)
T ss_dssp -CCCCC-CC-CC----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------C--------
T ss_pred eEEEee-EEEECCe--e-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCC--------
Confidence 455666 7888653 4 9999999999999 9999999999999999999983 344444322
Q ss_pred cccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhcccc
Q psy845 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDP 592 (677)
Q Consensus 514 i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~ 592 (677)
+....++.+++++|++.++ +.|+.||+.+
T Consensus 76 --------------------------------------------------~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~ 105 (427)
T 2qag_B 76 --------------------------------------------------QPGVQLQSNTYDLQESNVRLKLTIVSTVGF 105 (427)
T ss_dssp --------------------------------------------------CSSCEEEEEEEEEEC--CEEEEEEEEEECC
T ss_pred --------------------------------------------------CccceEeeEEEEeecCccccccchhhhhhh
Confidence 1112355788999988877 6799999987
Q ss_pred CCCCChHHHHHH----HHHccchhhHhh-------hhcccCCC----C-----CCCCCChHHHHHHHHHHHHhccchhh
Q psy845 593 FGRCHDTELWDA----LEKSHLKSKVVT-------MRSKLDSD----V-----QGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 593 ~~~~sdeeI~~A----l~~a~l~efI~~-------LP~GldT~----v-----~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
+...+.++-++. ++. ...+++.+ ++..-|++ + .+..|+-.+ +.++|+|-++++++
T Consensus 106 g~~~~~~~~~~~i~~~i~~-q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI 180 (427)
T 2qag_B 106 GDQINKEDSYKPIVEFIDA-QFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNII 180 (427)
T ss_dssp CC-CCHHHHSHHHHHHHHH-HHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEE
T ss_pred hhccccchhhhHHHHHHHH-HHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEE
Confidence 654443221111 111 11122221 12223333 1 245677665 78999998777655
No 101
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.26 E-value=2.2e-12 Score=134.70 Aligned_cols=114 Identities=16% Similarity=0.067 Sum_probs=74.2
Q ss_pred eEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEE---CCEecccccHHHhhhhcccccCCccccccccccCCCCC
Q psy845 459 FRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKI---DDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGK 535 (677)
Q Consensus 459 l~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~I---dG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~ 535 (677)
|++.+|+.++++||||||||||+|+|+|+..|++|+|.+ +|.+++........+++|+++|+|.+..
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~---------- 233 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFAN---------- 233 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTT----------
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCc----------
Confidence 456789999999999999999999999999999999999 9998876431111247899999987643
Q ss_pred chhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccc----cccc-ccchhhccccCC----CCChHHHHHHHH
Q psy845 536 SSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQD----PVLF-NGTIRYNLDPFG----RCHDTELWDALE 606 (677)
Q Consensus 536 ~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd----~~LF-sgTIrENI~~~~----~~sdeeI~~Al~ 606 (677)
++++.|+ ..+| +-|+ ||+.+.. ...+..+.++++
T Consensus 234 ------------------------------------~~~~~~~~~~~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~ 276 (301)
T 1u0l_A 234 ------------------------------------LEINDIEPEELKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVE 276 (301)
T ss_dssp ------------------------------------CCCCSSCHHHHGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHH
T ss_pred ------------------------------------cCCCcCCHHHHHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHH
Confidence 2234444 3344 4577 8887531 223467899999
Q ss_pred Hccch-hhHhhhhc
Q psy845 607 KSHLK-SKVVTMRS 619 (677)
Q Consensus 607 ~a~l~-efI~~LP~ 619 (677)
..++. +...+.|.
T Consensus 277 ~~~L~~~~~~~~~~ 290 (301)
T 1u0l_A 277 NGEIAESRYENYVK 290 (301)
T ss_dssp HTSSCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHH
Confidence 99994 66666654
No 102
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.25 E-value=2.4e-08 Score=113.18 Aligned_cols=35 Identities=37% Similarity=0.662 Sum_probs=32.8
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
-+.+|+||||||||+++|+|+++|++|+|++||.|
T Consensus 372 ~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~ 406 (582)
T 3b5x_A 372 VALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHD 406 (582)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEE
Confidence 35689999999999999999999999999999987
No 103
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.23 E-value=2e-13 Score=149.46 Aligned_cols=128 Identities=16% Similarity=0.124 Sum_probs=72.4
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhc
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i 514 (677)
+.|+++|++++|++. .+++|+||+| +||||||||||||++.|+|...|..| .+|.++...
T Consensus 10 ~~l~~~~l~~~y~~~--~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~--------- 69 (418)
T 2qag_C 10 GYVGFANLPNQVYRK--SVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIK--------- 69 (418)
T ss_dssp -----CCCCCCTTTT--TCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC-------------
T ss_pred CcEEEEecceeECCE--EEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCc---------
Confidence 468999999999753 6999999987 99999999999999999999887666 233322110
Q ss_pred ccccCCccccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccC
Q psy845 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPF 593 (677)
Q Consensus 515 ~~v~q~~~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~ 593 (677)
...-++.+++++|++.++ +.|+.||+.++
T Consensus 70 --------------------------------------------------~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~ 99 (418)
T 2qag_C 70 --------------------------------------------------KTVQVEQSKVLIKEGGVQLLLTIVDTPGFG 99 (418)
T ss_dssp ---------------------------------------------------CCEEEEEECC------CEEEEEEECC---
T ss_pred --------------------------------------------------cceeeeeEEEEEecCCcccceeeeechhhh
Confidence 001134678888887776 67999998654
Q ss_pred CCCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccch
Q psy845 594 GRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTK 649 (677)
Q Consensus 594 ~~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~ 649 (677)
...+.++.++.+ .+++.+ .++.+++||++||||++++|+
T Consensus 100 ~~~~~~~~~~~i-----~~~i~~------------~~~~~l~qr~~IaRal~~d~~ 138 (418)
T 2qag_C 100 DAVDNSNCWQPV-----IDYIDS------------KFEDYLNAESRVNRRQMPDNR 138 (418)
T ss_dssp --------CHHH-----HHHHHH------------HHHHHTTTSCC-CCCCCCCC-
T ss_pred hhccchhhHHHH-----HHHHHH------------HHHHHHHHHHHHHHHhccCCC
Confidence 332222222211 122221 344567789999999999998
No 104
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.23 E-value=4.1e-12 Score=124.18 Aligned_cols=31 Identities=29% Similarity=0.416 Sum_probs=29.0
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcCCCC
Q psy845 460 RINHGENIGIVGRTGAGKSSLLVALFRLVEL 490 (677)
Q Consensus 460 ~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p 490 (677)
-+++||.++|+||||||||||+++|+|.+.|
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~ 51 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQL 51 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 6999999999999999999999999997666
No 105
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.23 E-value=1.2e-13 Score=135.64 Aligned_cols=40 Identities=28% Similarity=0.520 Sum_probs=36.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccc
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV 505 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l 505 (677)
||+++|+|||||||||++++|+|+++ ++| |.+||.+..++
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~ 40 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEV 40 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEE
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchh
Confidence 79999999999999999999999998 999 99998887554
No 106
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.23 E-value=5.9e-12 Score=135.35 Aligned_cols=33 Identities=39% Similarity=0.571 Sum_probs=31.3
Q ss_pred cccceeeEEeCCcEEEEEcCCCCChHHHHHHHhc
Q psy845 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 453 VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r 486 (677)
.++++++++++| .++|+|||||||||+++++.+
T Consensus 16 ~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 16 NLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp TCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 578999999999 999999999999999999986
No 107
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.23 E-value=1.8e-13 Score=143.19 Aligned_cols=55 Identities=25% Similarity=0.307 Sum_probs=22.4
Q ss_pred EeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcC-CCCCccEEEECCEecc
Q psy845 440 KNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRL-VELSSGQIKIDDFDIA 503 (677)
Q Consensus 440 knVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~-y~p~~G~I~IdG~dI~ 503 (677)
+|++++|++. .+++|++|+| ++|||||||||||++.|+|. ..|++| +.++|.++.
T Consensus 2 ~~l~~~~~~~--~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~ 57 (301)
T 2qnr_A 2 SNLPNQVHRK--SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIE 57 (301)
T ss_dssp ------------------CEEE------EEEEETTSSHHHHHHHHHC------------------
T ss_pred CCCcceECCE--EEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccC
Confidence 4788889653 6999999987 99999999999999999998 888999 888887653
No 108
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.22 E-value=1.3e-12 Score=136.75 Aligned_cols=63 Identities=21% Similarity=0.180 Sum_probs=44.8
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEE---CCEecccccHHHhh-hhcccccCCcccc
Q psy845 460 RINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKI---DDFDIASVELETLR-SRLSVIPQDPVLF 524 (677)
Q Consensus 460 ~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~I---dG~dI~~l~~~~~~-~~i~~v~q~~~lf 524 (677)
++.+|++++++||||||||||+|+|+ ..+|++|+|.+ +|.+++... +..+ +++|+++|+|.+.
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~-~~~~~~~~g~v~d~pg~~ 227 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGV-RLIPFGKGSFVGDTPGFS 227 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCE-EEEEETTTEEEESSCCCS
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeE-EEEEcCCCcEEEECcCcC
Confidence 45679999999999999999999999 99999999999 998886542 1222 3577777776553
No 109
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.21 E-value=8.3e-13 Score=129.51 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=26.4
Q ss_pred CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC
Q psy845 451 PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE 489 (677)
Q Consensus 451 ~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~ 489 (677)
.++++| .++++||.+||+||||||||||+++|+|+++
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 468888 7999999999999999999999999999985
No 110
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.20 E-value=4.3e-13 Score=130.74 Aligned_cols=30 Identities=37% Similarity=0.395 Sum_probs=26.4
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhcCCCC
Q psy845 461 INHGENIGIVGRTGAGKSSLLVALFRLVEL 490 (677)
Q Consensus 461 I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p 490 (677)
.++|+++||+|||||||||++++|+|++.|
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~ 32 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE 32 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 578999999999999999999999998754
No 111
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.19 E-value=7.1e-09 Score=117.77 Aligned_cols=35 Identities=34% Similarity=0.744 Sum_probs=33.1
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
-+.+|+||||||||+++|+|+++|++|+|++||.|
T Consensus 372 ~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~ 406 (587)
T 3qf4_A 372 VAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELD 406 (587)
T ss_dssp EEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSB
T ss_pred EEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEE
Confidence 46789999999999999999999999999999987
No 112
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.18 E-value=1e-11 Score=127.92 Aligned_cols=48 Identities=17% Similarity=0.206 Sum_probs=43.6
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCcc-EEEECC
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG-QIKIDD 499 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G-~I~IdG 499 (677)
++|+++++.+++||.++|+||+|||||||++.+++...|++| +|.+.+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 489999999999999999999999999999999999999878 675543
No 113
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.17 E-value=1.2e-08 Score=115.44 Aligned_cols=35 Identities=34% Similarity=0.685 Sum_probs=32.9
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
-+.+|+||||||||+++|+|+++|++|+|++||.|
T Consensus 372 ~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~ 406 (582)
T 3b60_A 372 VALVGRSGSGKSTIASLITRFYDIDEGHILMDGHD 406 (582)
T ss_dssp EEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEE
T ss_pred EEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEE
Confidence 36789999999999999999999999999999987
No 114
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.17 E-value=2e-08 Score=113.97 Aligned_cols=35 Identities=43% Similarity=0.756 Sum_probs=33.0
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
-+.+|+||||||||+++|+|+++|++|+|++||.|
T Consensus 373 ~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~ 407 (595)
T 2yl4_A 373 TALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHD 407 (595)
T ss_dssp EEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEE
T ss_pred EEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEE
Confidence 46789999999999999999999999999999987
No 115
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.17 E-value=2.9e-09 Score=120.64 Aligned_cols=36 Identities=42% Similarity=0.667 Sum_probs=33.5
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccch
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 560 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 560 (677)
-+.+|.||||||||+++|+|+++|++|+|++||.|+
T Consensus 370 ~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~ 405 (578)
T 4a82_A 370 VAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNI 405 (578)
T ss_dssp EEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEG
T ss_pred EEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEh
Confidence 367899999999999999999999999999999873
No 116
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.14 E-value=4.5e-13 Score=138.23 Aligned_cols=124 Identities=14% Similarity=0.074 Sum_probs=85.9
Q ss_pred CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCcccccccccc
Q psy845 451 PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGR 530 (677)
Q Consensus 451 ~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~ 530 (677)
+.+++++++++++| ++|+||+|||||||++++++...+ |.|.++|.++.+.
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~------------------------- 83 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNM------------------------- 83 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSS-------------------------
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhh-------------------------
Confidence 35899999999999 999999999999999999999876 7899998777554
Q ss_pred CCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc-ccc-ccchhhccccCCCC-ChHHHHHHHHH
Q psy845 531 TGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP-VLF-NGTIRYNLDPFGRC-HDTELWDALEK 607 (677)
Q Consensus 531 n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~-~LF-sgTIrENI~~~~~~-sdeeI~~Al~~ 607 (677)
...+.++++++++|++ ..+ .-++.||++..... .+++.
T Consensus 84 ---------------------------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~------ 124 (274)
T 2x8a_A 84 ---------------------------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRET------ 124 (274)
T ss_dssp ---------------------------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-------------
T ss_pred ---------------------------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcc------
Confidence 2223455667777764 232 34677888643211 11110
Q ss_pred ccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 608 SHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 608 a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
....+...++ -.+|||||+||..+|+|+..+|+++
T Consensus 125 ~~~~~~~~~~---------l~~Lsgg~~~~~~i~ia~tn~p~~L 159 (274)
T 2x8a_A 125 GASVRVVNQL---------LTEMDGLEARQQVFIMAATNRPDII 159 (274)
T ss_dssp --CTTHHHHH---------HHHHHTCCSTTCEEEEEEESCGGGS
T ss_pred hHHHHHHHHH---------HHhhhcccccCCEEEEeecCChhhC
Confidence 0011222222 2368999999999999999999876
No 117
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.13 E-value=1.5e-12 Score=136.12 Aligned_cols=83 Identities=17% Similarity=0.210 Sum_probs=70.4
Q ss_pred CccEEEEeeeEEeCCCCCccccceeeEE-------------------eCCcEEEEEcCCCCChHHHHHHHhcCCC--CCc
Q psy845 434 QGTIKFKNVSLRYRDNWPLVLANVSFRI-------------------NHGENIGIVGRTGAGKSSLLVALFRLVE--LSS 492 (677)
Q Consensus 434 ~g~I~fknVsFsY~~~~~~VLknISl~I-------------------~~GE~VAIVGpSGSGKSTLi~LL~r~y~--p~~ 492 (677)
++.|+++||++.|. ++++++|+++ ++|+++||+|||||||||++++|+|++. |++
T Consensus 35 ~~~i~~~~v~~~y~----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~ 110 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEH 110 (308)
T ss_dssp CTTCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTC
T ss_pred ccccchHhHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCC
Confidence 45689999999993 5999999998 8999999999999999999999999998 999
Q ss_pred cEEEE---CCEecccccHHHhhhhcccccCCccccc
Q psy845 493 GQIKI---DDFDIASVELETLRSRLSVIPQDPVLFN 525 (677)
Q Consensus 493 G~I~I---dG~dI~~l~~~~~~~~i~~v~q~~~lf~ 525 (677)
|+|.+ ||.+.. ...++++|++ |+..++.
T Consensus 111 G~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~ 141 (308)
T 1sq5_A 111 RRVELITTDGFLHP----NQVLKERGLM-KKKGFPE 141 (308)
T ss_dssp CCEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGG
T ss_pred CeEEEEecCCccCc----HHHHHhCCEe-ecCCCCC
Confidence 99999 987752 2345678888 7655543
No 118
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.11 E-value=2.8e-12 Score=126.94 Aligned_cols=61 Identities=13% Similarity=0.157 Sum_probs=46.3
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHh--cCCCCCccEEEECCEe
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALF--RLVELSSGQIKIDDFD 501 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~--r~y~p~~G~I~IdG~d 501 (677)
+++++++..|++-+ .++.+ .+++||.++|+||||||||||+++++ +..++.+|.+.+++.+
T Consensus 7 ~~~~~i~tg~~~lD-~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 7 QPVRRVKSGIPGFD-ELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp -CCCEECCSCTTTG-GGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred cccceeecCCHhHH-HHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 45566777665432 24544 79999999999999999999999999 7656777778777654
No 119
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.11 E-value=2.3e-11 Score=136.09 Aligned_cols=53 Identities=17% Similarity=0.020 Sum_probs=40.0
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccE
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~ 494 (677)
++.+++++.|++-+ .+|++ .+++|+.++|+||+|||||||++.+++...|+ |+
T Consensus 258 ~~~~~l~~g~~~ld-~vL~g---~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~ 310 (525)
T 1tf7_A 258 SSNVRVSSGVVRLD-EMCGG---GFFKDSIILATGATGTGKTLLVSRFVENACAN-KE 310 (525)
T ss_dssp CCCCEECCSCHHHH-HHTTS---SEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC
T ss_pred cccceeecChHHHH-HHhCC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC
Confidence 45556666554211 24443 89999999999999999999999999998775 53
No 120
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.10 E-value=1.3e-11 Score=125.24 Aligned_cols=102 Identities=21% Similarity=0.202 Sum_probs=74.1
Q ss_pred cccceeeEEeCCcEEEEEcCCCCChHHHHHHHh---cCCCCCccEEE--------ECCEecccccHHHhhhhcccccCCc
Q psy845 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALF---RLVELSSGQIK--------IDDFDIASVELETLRSRLSVIPQDP 521 (677)
Q Consensus 453 VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~---r~y~p~~G~I~--------IdG~dI~~l~~~~~~~~i~~v~q~~ 521 (677)
++++.+ ++|+++||+|||||||||++++|+ |++.|++|++. .+|.++.+-
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~---------------- 79 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTE---------------- 79 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSS----------------
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccH----------------
Confidence 445543 789999999999999999999999 99999999888 777776332
Q ss_pred cccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccc------cccccccchhhccccCCC
Q psy845 522 VLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQ------DPVLFNGTIRYNLDPFGR 595 (677)
Q Consensus 522 ~lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Q------d~~LFsgTIrENI~~~~~ 595 (677)
....++++++++++| ..++++.++.+|++
T Consensus 80 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~i~---- 114 (252)
T 4e22_A 80 -----------------------------------------EALVPLAAHLDVRFVSQNGQLQVILEGEDVSNEIR---- 114 (252)
T ss_dssp -----------------------------------------TTHHHHHHTCCEEEEEETTEEEEEETTEECTTGGG----
T ss_pred -----------------------------------------HHHHHHHHcCCEEEecCCCCceEEECCeehhHHHH----
Confidence 145567777777774 45677788888875
Q ss_pred CChHHHHHHHHHccchhhHhhhhcc
Q psy845 596 CHDTELWDALEKSHLKSKVVTMRSK 620 (677)
Q Consensus 596 ~sdeeI~~Al~~a~l~efI~~LP~G 620 (677)
.+++.+++..+..++.+.+....
T Consensus 115 --~~~v~~~~s~~~~~~~vr~~l~~ 137 (252)
T 4e22_A 115 --TETVGNTASQAAAFPRVREALLR 137 (252)
T ss_dssp --SHHHHHHHHHHTTSHHHHHHHHH
T ss_pred --HHHHHHHHHHhcccHHHHHHHHH
Confidence 45676777777777666555443
No 121
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.09 E-value=2.5e-12 Score=144.18 Aligned_cols=51 Identities=27% Similarity=0.362 Sum_probs=48.1
Q ss_pred CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEe
Q psy845 451 PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 501 (677)
Q Consensus 451 ~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~d 501 (677)
+.+++++++.+++|+.++|+|||||||||++++|+|+++|++|.|.++|.+
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence 457899999999999999999999999999999999999999999998865
No 122
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.09 E-value=3e-12 Score=146.14 Aligned_cols=66 Identities=20% Similarity=0.291 Sum_probs=40.1
Q ss_pred cEEEEeeeEEeCCCCCccccce----------eeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC-CccEEEECCEeccc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANV----------SFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-SSGQIKIDDFDIAS 504 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknI----------Sl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-~~G~I~IdG~dI~~ 504 (677)
.++++|+++.|++...++|+.+ +++++. +|||||||||||||+++|+|++.| ++|+|.++|.++..
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 5789999999975433455555 366654 999999999999999999999989 89999999999743
No 123
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.07 E-value=3.3e-08 Score=112.50 Aligned_cols=36 Identities=39% Similarity=0.733 Sum_probs=33.5
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccch
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 560 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 560 (677)
-+.+|+||||||||+++|+|+++|++|+|.+||.|+
T Consensus 384 ~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i 419 (598)
T 3qf4_B 384 VALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDI 419 (598)
T ss_dssp EEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEG
T ss_pred EEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEh
Confidence 467899999999999999999999999999999873
No 124
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.06 E-value=6.6e-12 Score=134.74 Aligned_cols=58 Identities=19% Similarity=0.215 Sum_probs=49.3
Q ss_pred EeeeEEeCCCCCccccceee-------EEeCCcEEEEEcCCCCChHHHHHHHhcCCCCC-ccEEEE
Q psy845 440 KNVSLRYRDNWPLVLANVSF-------RINHGENIGIVGRTGAGKSSLLVALFRLVELS-SGQIKI 497 (677)
Q Consensus 440 knVsFsY~~~~~~VLknISl-------~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~-~G~I~I 497 (677)
.+++++|.+...+.|+++++ ..++|+.++|+|||||||||++++++|+++|+ +|.|..
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t 157 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILT 157 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEE
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEE
Confidence 57888886665678888887 78899999999999999999999999999997 566644
No 125
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.05 E-value=2.7e-12 Score=126.04 Aligned_cols=105 Identities=25% Similarity=0.239 Sum_probs=70.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCC---CCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhH
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLV---ELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLL 539 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y---~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~ 539 (677)
.+.++||+||+||||||+.++|.+.+ .++.|++..+ ...
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~---------------~~~----------------------- 45 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRV---------------LAL----------------------- 45 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHH---------------HHH-----------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeeh---------------hhH-----------------------
Confidence 36789999999999999999999876 4555544330 000
Q ss_pred HHHHHhhhhccccccccccchh-hhhHHHHhhhcccccccc------cccccchhhccccCCCCChHHHHHHHHHccchh
Q psy845 540 VALFRLVELSSGQIKIDDFDIA-SVELETLRSRLSVIPQDP------VLFNGTIRYNLDPFGRCHDTELWDALEKSHLKS 612 (677)
Q Consensus 540 ~~~~~~~~~~~g~i~~~~~~~~-~~~~~~LR~~I~~V~Qd~------~LFsgTIrENI~~~~~~sdeeI~~Al~~a~l~e 612 (677)
...+ +|.++. .....++++++++++|++ .++..++.+|+ .++++.+++..+..++
T Consensus 46 ------~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~------~~~~~~~~~~~~~~~~ 107 (227)
T 1cke_A 46 ------AALH------HHVDVASEDALVPLASHLDVRFVSTNGNLEVILEGEDVSGEI------RTQEVANAASQVAAFP 107 (227)
T ss_dssp ------HHHH------HTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETTEECHHHH------TSHHHHHHHHHHTTCH
T ss_pred ------HHHH------cCCCccCHHHHHHHHHhCceeeeccCCCceEEECCeeCchhh------CCHHHHHHHHHhcCCH
Confidence 0000 111111 126778899999999886 44555666665 3678899999999999
Q ss_pred hHhhhhcccCC
Q psy845 613 KVVTMRSKLDS 623 (677)
Q Consensus 613 fI~~LP~GldT 623 (677)
.+.+...+.++
T Consensus 108 ~v~~~~~~~~~ 118 (227)
T 1cke_A 108 RVREALLRRQR 118 (227)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98887665543
No 126
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.05 E-value=3.5e-11 Score=134.23 Aligned_cols=51 Identities=20% Similarity=0.139 Sum_probs=47.0
Q ss_pred ccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccc
Q psy845 454 LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 504 (677)
Q Consensus 454 LknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~ 504 (677)
-+++||++++|++++|||+|||||||+++.|+|++.|++|+|.++|.|...
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR 333 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccc
Confidence 468999999999999999999999999999999999999999998877643
No 127
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.01 E-value=5.6e-11 Score=114.63 Aligned_cols=64 Identities=25% Similarity=0.235 Sum_probs=45.7
Q ss_pred eeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccc
Q psy845 458 SFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 525 (677)
Q Consensus 458 Sl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~ 525 (677)
|+++++|+.++|+|||||||||++++|+|++ | .+.++|.++...+....++.+++++|++.+|.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL-A---EIKISISHTTRPKRPGDQEGVDYFFIDETRFQ 64 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS-S---SEEECCCEECSCCCTTCCBTTTBEECCHHHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC-C---CeEEeceeccCCCchhHhcCceEEeccHHHHH
Confidence 5778899999999999999999999999997 3 58888877766533333455666666555444
No 128
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.96 E-value=1.9e-10 Score=128.16 Aligned_cols=64 Identities=17% Similarity=0.197 Sum_probs=55.3
Q ss_pred EEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccccc
Q psy845 438 KFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE 506 (677)
Q Consensus 438 ~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~ 506 (677)
++++++... ..+|+|+||++++ |++||+||||||||||+++|+|+++|++|+|.++|.++.+.+
T Consensus 8 ~l~~l~~~~----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~ 71 (483)
T 3euj_A 8 KFRSLTLIN----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGST 71 (483)
T ss_dssp EEEEEEEEE----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCC
T ss_pred ceeEEEEec----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCc
Confidence 345555432 1489999999999 999999999999999999999999999999999999987543
No 129
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.96 E-value=8.7e-11 Score=117.70 Aligned_cols=62 Identities=19% Similarity=0.141 Sum_probs=48.0
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcCCCC--CccEEEECCEecccccHHHhhhhcccccCCccccc
Q psy845 460 RINHGENIGIVGRTGAGKSSLLVALFRLVEL--SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 525 (677)
Q Consensus 460 ~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p--~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~ 525 (677)
..++|+.++|+||||||||||+++|+|.++| ..|+|.+++.+.+.- .++.++|+||++.+|+
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~----e~~gi~y~fq~~~~f~ 75 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPG----EVHGEHYFFVNHDEFK 75 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTT----CCBTTTBEECCHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcc----cccCceEEECCHHHHH
Confidence 4688999999999999999999999999986 789999888765431 2456677777666655
No 130
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.95 E-value=1.5e-10 Score=123.51 Aligned_cols=49 Identities=27% Similarity=0.310 Sum_probs=41.5
Q ss_pred cccce-eeEEeCCcEEEEEcCCCCChHHHHHHHhcCC--CCCc----cE-EEECCEe
Q psy845 453 VLANV-SFRINHGENIGIVGRTGAGKSSLLVALFRLV--ELSS----GQ-IKIDDFD 501 (677)
Q Consensus 453 VLknI-Sl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y--~p~~----G~-I~IdG~d 501 (677)
.|+++ +..+++|+.++|+||+|||||||++.+++.+ +|++ |+ |++|+.+
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 45555 6799999999999999999999999999998 6666 56 7877754
No 131
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.95 E-value=1.6e-10 Score=128.96 Aligned_cols=80 Identities=23% Similarity=0.348 Sum_probs=58.0
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcC----------------------C-C---
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRL----------------------V-E--- 489 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~----------------------y-~--- 489 (677)
.++++|+. .++++++++.+| ..+|+|+||||||||+.+|..+ + +
T Consensus 42 ~L~i~nf~---------~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~llg~r~~~~~i~~g~~~a~v~~~f~~~~~ 111 (517)
T 4ad8_A 42 RLEIRNLA---------TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDE 111 (517)
T ss_dssp EEEEESBT---------TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHTCSCCCGGGBCTTCSEEEEEEEC-----
T ss_pred eeeccccc---------ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHhcCCcHHHHhcCCCCcEEEEEEEEecCC
Confidence 46777642 567889999999 9999999999999999999544 4 2
Q ss_pred ------------CCccEEEECCEecccccHHHh-hhhcccccCCccccc
Q psy845 490 ------------LSSGQIKIDDFDIASVELETL-RSRLSVIPQDPVLFN 525 (677)
Q Consensus 490 ------------p~~G~I~IdG~dI~~l~~~~~-~~~i~~v~q~~~lf~ 525 (677)
..++++++||.+++.-...++ ..-+.+++|+..+..
T Consensus 112 ~~~~~i~r~~~~~g~~~~~ing~~v~~~~l~~~~~~li~i~~q~~~~~l 160 (517)
T 4ad8_A 112 SEADSASRRLSSAGRGAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSL 160 (517)
T ss_dssp ---CEEEEEEETTSCCEEESSSSBCCHHHHHHHHTTTEEEESGGGGGTT
T ss_pred CCeEEEEEEEecCCCcEEEECCEECCHHHHHHHhhhheEEeCCchHHhc
Confidence 235689999998865434444 344567787755433
No 132
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.92 E-value=4.6e-11 Score=125.94 Aligned_cols=66 Identities=20% Similarity=0.235 Sum_probs=38.3
Q ss_pred eEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEE---CCEecccccHHHhhhhcccccCCccccc
Q psy845 459 FRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKI---DDFDIASVELETLRSRLSVIPQDPVLFN 525 (677)
Q Consensus 459 l~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~I---dG~dI~~l~~~~~~~~i~~v~q~~~lf~ 525 (677)
+++.+|++++|+||||||||||+|.|+|...|..|+|.+ +|.+.+... +..+..+|+++|+|.+..
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~ 236 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSS 236 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSS
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccc
Confidence 567799999999999999999999999999999999999 888775431 222223778888876643
No 133
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.89 E-value=4.2e-10 Score=135.27 Aligned_cols=53 Identities=13% Similarity=0.255 Sum_probs=41.7
Q ss_pred ccEEEEe-----eeEEeCCCCCccccceeeEEeC-------CcEEEEEcCCCCChHHHHHHHhcCCC
Q psy845 435 GTIKFKN-----VSLRYRDNWPLVLANVSFRINH-------GENIGIVGRTGAGKSSLLVALFRLVE 489 (677)
Q Consensus 435 g~I~fkn-----VsFsY~~~~~~VLknISl~I~~-------GE~VAIVGpSGSGKSTLi~LL~r~y~ 489 (677)
+.|+++| |+++|+++ ..|++|+||++++ |+.++|+|||||||||++|.+ |+..
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~-~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGD-DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CCEEEEEECCCC------CC-CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred ceEEEEeccccEEEEEecCC-ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH
Confidence 4699999 99999543 4699999999987 999999999999999999999 8763
No 134
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.87 E-value=2.5e-09 Score=116.46 Aligned_cols=49 Identities=22% Similarity=0.403 Sum_probs=38.9
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCc
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS 492 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~ 492 (677)
.++++|+ .+|++. . ++++.+|+.++|+|||||||||+++++.++..|.+
T Consensus 6 ~l~~~~~-~~~~~~-----~--~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~ 54 (430)
T 1w1w_A 6 GLELSNF-KSYRGV-----T--KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRS 54 (430)
T ss_dssp EEEEESC-SSCCSE-----E--EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred EEEEeCE-EEECCc-----e--eEEecCCCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence 5888998 678531 1 35567899999999999999999999999887765
No 135
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.87 E-value=6.8e-10 Score=110.23 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=23.4
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHh-cCCCC
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALF-RLVEL 490 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~-r~y~p 490 (677)
...+++||++++|+.+||+|||||||||++++|+ |++++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 4678999999999999999999999999999999 99854
No 136
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.87 E-value=6.1e-10 Score=118.28 Aligned_cols=46 Identities=20% Similarity=0.202 Sum_probs=42.6
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccc
Q psy845 460 RINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV 505 (677)
Q Consensus 460 ~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l 505 (677)
+.++|+.+++||||||||||+++.|+|++.|++|+|.++|.|+...
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~ 170 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRA 170 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSST
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeeccccc
Confidence 3478999999999999999999999999999999999999998654
No 137
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.86 E-value=9.8e-10 Score=128.54 Aligned_cols=56 Identities=20% Similarity=0.179 Sum_probs=45.4
Q ss_pred CccEEEEeeeEEeCC---CCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCC-CCccE
Q psy845 434 QGTIKFKNVSLRYRD---NWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE-LSSGQ 494 (677)
Q Consensus 434 ~g~I~fknVsFsY~~---~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~-p~~G~ 494 (677)
.+.+++++. ++|- +++.|++|+||+ |+.++|+|||||||||++|+++|+.. ++.|+
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~ 607 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGS 607 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTC
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCc
Confidence 456888887 4543 335799999999 99999999999999999999999763 45554
No 138
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.84 E-value=6.6e-10 Score=107.03 Aligned_cols=129 Identities=20% Similarity=0.181 Sum_probs=59.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHHHHH
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALF 543 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~~~~ 543 (677)
|+.++|+|||||||||++++|+|++++..|....+..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~t------------------------------------------- 37 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTT------------------------------------------- 37 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEEC-------------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccc-------------------------------------------
Confidence 6789999999999999999999999755443221100
Q ss_pred HhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHHHHcc---c------hhhH
Q psy845 544 RLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSH---L------KSKV 614 (677)
Q Consensus 544 ~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~a~---l------~efI 614 (677)
-+|.+|++ +|.++...+.+..++.+ .|+.+++.+++..|+ ++ .+.+++.++++... + ...+
T Consensus 38 --r~~~~ge~--~g~~~~~~~~~~~~~~~---~~~~~~e~~~~~~~~-yg--~~~~~i~~~l~~g~~~il~~~~~g~~~l 107 (186)
T 3a00_A 38 --RTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSGNY-YG--STVASVKQVSKSGKTCILDIDMQGVKSV 107 (186)
T ss_dssp --SCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETTEE-EE--EEHHHHHHHHHTTCEEEEECCHHHHHHH
T ss_pred --cCCCCCcc--CCeeeeecCHHHHHHHH---hhcceeeEEEEecee-cc--CcHHHHHHHHHcCCeEEEEEcHHHHHHH
Confidence 12445553 66666555666555543 367777777777776 22 12344544444311 1 0011
Q ss_pred hh--------------hhcccCCCC--CCCCCChHHHHHHHHHHHHh
Q psy845 615 VT--------------MRSKLDSDV--QGDQLSLGEKQLLCLARALL 645 (677)
Q Consensus 615 ~~--------------LP~GldT~v--~G~~LSGGQRQRIaIARALL 645 (677)
.+ -++.+..++ +|..-....+||++-|++-+
T Consensus 108 ~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~~~~~ 154 (186)
T 3a00_A 108 KAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAEL 154 (186)
T ss_dssp HTCGGGCCEEEEEECSCC-----------------------------
T ss_pred HHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 11 113344444 56666667778888887654
No 139
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.84 E-value=7.9e-10 Score=106.11 Aligned_cols=92 Identities=11% Similarity=0.049 Sum_probs=64.1
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCCCC-CccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHH
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLVEL-SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLV 540 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~ 540 (677)
.+|+.++|+||||||||||+++|++.+++ ..|.|.....
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr---------------------------------------- 42 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTR---------------------------------------- 42 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECS----------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCC----------------------------------------
Confidence 36999999999999999999999999864 4565543221
Q ss_pred HHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHHHH
Q psy845 541 ALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEK 607 (677)
Q Consensus 541 ~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~ 607 (677)
+|.+|+ .||.++.-.+.+++++. +.|+.+++.+++.+|. ++ .+.+++.++++.
T Consensus 43 ------~~~~ge--~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~n~-yg--~~~~~i~~~l~~ 95 (180)
T 1kgd_A 43 ------PPKKDE--ENGKNYYFVSHDQMMQD---ISNNEYLEYGSHEDAM-YG--TKLETIRKIHEQ 95 (180)
T ss_dssp ------CC---C--CBTTTBEECCHHHHHHH---HHTTCEEEEEEETTEE-EE--EEHHHHHHHHHT
T ss_pred ------CCCccc--cCCCeeEEeCHHHHHHH---HHcCCceEEEEEcCcc-cc--ccHHHHHHHHHC
Confidence 233343 46666666677777764 6799999999999994 32 234556655553
No 140
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.82 E-value=1.5e-11 Score=125.61 Aligned_cols=61 Identities=23% Similarity=0.321 Sum_probs=51.1
Q ss_pred EEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccc
Q psy845 438 KFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 504 (677)
Q Consensus 438 ~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~ 504 (677)
+++++...|.+ +.+++++++++++| ++|+||+|||||||++++++... .|.|.++|.++.+
T Consensus 51 ~l~~l~~~~~~--~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~ 111 (278)
T 1iy2_A 51 ELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVE 111 (278)
T ss_dssp HHHHHHHHHHC--HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHH
T ss_pred HHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHH
Confidence 45677777754 35899999999999 99999999999999999999875 7888888766544
No 141
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.82 E-value=7.9e-09 Score=101.74 Aligned_cols=42 Identities=19% Similarity=0.251 Sum_probs=36.1
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhc--CCCC-----CccEEEECCEe
Q psy845 460 RINHGENIGIVGRTGAGKSSLLVALFR--LVEL-----SSGQIKIDDFD 501 (677)
Q Consensus 460 ~I~~GE~VAIVGpSGSGKSTLi~LL~r--~y~p-----~~G~I~IdG~d 501 (677)
-+++|+.++|+||+||||||+++.+++ ..+| .+|.+++++.+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 489999999999999999999999999 5655 56788887755
No 142
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.82 E-value=1.3e-09 Score=108.18 Aligned_cols=96 Identities=11% Similarity=0.112 Sum_probs=66.3
Q ss_pred eeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC-CccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCc
Q psy845 458 SFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKS 536 (677)
Q Consensus 458 Sl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~ 536 (677)
|+...+|+.++|+||||||||||++.|++.++. ..+.+... .
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~T-----T-------------------------------- 55 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYT-----T-------------------------------- 55 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEE-----C--------------------------------
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeeccc-----c--------------------------------
Confidence 344558999999999999999999999998752 11111110 0
Q ss_pred hhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHHHH
Q psy845 537 SLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEK 607 (677)
Q Consensus 537 ~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al~~ 607 (677)
-+|.+|+ +||.++.-.+.++.++.+ .|+.+++.+++.+|. ++. +.+++.+++++
T Consensus 56 ---------R~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~~~~~~n~-YGt--~~~~v~~~l~~ 109 (197)
T 3ney_A 56 ---------RPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEFGSYQGNM-FGT--KFETVHQIHKQ 109 (197)
T ss_dssp ---------SCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEEEEETTEE-EEE--EHHHHHHHHHT
T ss_pred ---------cCCcCCe--eccccceeccHHHhhhhh---hhhhhhhhhhhhcee-ccc--chhhHHHHHhc
Confidence 1345565 677777777888888875 699999999999995 442 34555555554
No 143
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.81 E-value=3.2e-12 Score=134.82 Aligned_cols=60 Identities=17% Similarity=0.301 Sum_probs=46.4
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCC-------cEEEEEcCCCCChHHHHHHHhcCC----CCCccEEEEC
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHG-------ENIGIVGRTGAGKSSLLVALFRLV----ELSSGQIKID 498 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~G-------E~VAIVGpSGSGKSTLi~LL~r~y----~p~~G~I~Id 498 (677)
++.++++..|++ +.+++++++.+++| +.++++||+|+|||||++++++.. .|.+|++..+
T Consensus 19 lr~~~l~~~~g~--~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~ 89 (334)
T 1in4_A 19 LRPKSLDEFIGQ--ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK 89 (334)
T ss_dssp TSCSSGGGCCSC--HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS
T ss_pred cCCccHHHccCc--HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC
Confidence 444566666754 35999999999887 899999999999999999999987 4444544433
No 144
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.78 E-value=1.1e-09 Score=119.86 Aligned_cols=36 Identities=33% Similarity=0.432 Sum_probs=33.7
Q ss_pred cccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 453 VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
--+++|+++++|+.++|||++|||||||++.|++..
T Consensus 146 ~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 146 EKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp CEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred eEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 357999999999999999999999999999999974
No 145
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.78 E-value=2e-11 Score=122.65 Aligned_cols=62 Identities=23% Similarity=0.301 Sum_probs=51.8
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 504 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~ 504 (677)
.+++++...|.+ +.+++++++++++| ++|+||+|+|||||++++++... .|.+.++|.++.+
T Consensus 26 ~~l~~l~~~~~~--~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~ 87 (254)
T 1ixz_A 26 EELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVE 87 (254)
T ss_dssp HHHHHHHHHHHC--HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHH
T ss_pred HHHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHH
Confidence 456778777754 35899999999999 99999999999999999999875 7888888766543
No 146
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.74 E-value=1.7e-10 Score=116.60 Aligned_cols=75 Identities=16% Similarity=0.204 Sum_probs=52.4
Q ss_pred cEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccH--------
Q psy845 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL-------- 507 (677)
Q Consensus 436 ~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~-------- 507 (677)
.++++|++..|.. ++++++ +.++|+||||||||||+++|+|+..|++|+|.++|.++...++
T Consensus 9 ~l~l~~~~~~~~~---------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (227)
T 1qhl_A 9 SLTLINWNGFFAR---------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLH 78 (227)
T ss_dssp EEEEEEETTEEEE---------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CG
T ss_pred EEEEEeeecccCC---------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchh
Confidence 5889998766531 455566 8999999999999999999999999999999999999844322
Q ss_pred HHhhhhcccccCC
Q psy845 508 ETLRSRLSVIPQD 520 (677)
Q Consensus 508 ~~~~~~i~~v~q~ 520 (677)
...++++++++|+
T Consensus 79 ~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 79 GKLKAGVCYSMLD 91 (227)
T ss_dssp GGBCSSEEEEEEE
T ss_pred hHhhcCcEEEEEe
Confidence 2346789999975
No 147
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.72 E-value=3.6e-09 Score=101.84 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=30.0
Q ss_pred eEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCcc
Q psy845 459 FRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493 (677)
Q Consensus 459 l~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G 493 (677)
+++++|+.++|+|||||||||++++|++.+.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999977655
No 148
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.68 E-value=9.4e-09 Score=99.86 Aligned_cols=51 Identities=16% Similarity=0.131 Sum_probs=44.7
Q ss_pred ccccceee-EEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEec
Q psy845 452 LVLANVSF-RINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 502 (677)
Q Consensus 452 ~VLknISl-~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI 502 (677)
+.|+++.. .+++|+.++|+||+|||||||++.+++...+++|++.+.+.+.
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE 61 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 47888887 8999999999999999999999999998888888888765443
No 149
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=98.68 E-value=5.4e-08 Score=102.89 Aligned_cols=32 Identities=38% Similarity=0.434 Sum_probs=23.9
Q ss_pred eeEEeCCcEEEEEcCCCCChHHHHHHH-hcCCCC
Q psy845 458 SFRINHGENIGIVGRTGAGKSSLLVAL-FRLVEL 490 (677)
Q Consensus 458 Sl~I~~GE~VAIVGpSGSGKSTLi~LL-~r~y~p 490 (677)
.++..+| ..+|+|||||||||++.++ .++|.+
T Consensus 18 ~i~f~~~-~~~i~G~NGsGKS~lleAi~~~l~~~ 50 (339)
T 3qkt_A 18 VVEFKEG-INLIIGQNGSGKSSLLDAILVGLYWP 50 (339)
T ss_dssp EEECCSE-EEEEECCTTSSHHHHHHHHHHHHHCS
T ss_pred EEcCCCC-eEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4445555 8899999999999999976 344433
No 150
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.66 E-value=1.6e-08 Score=120.48 Aligned_cols=50 Identities=20% Similarity=0.206 Sum_probs=41.1
Q ss_pred ccEEEEeeeEEeCC---CCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHH
Q psy845 435 GTIKFKNVSLRYRD---NWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVAL 484 (677)
Q Consensus 435 g~I~fknVsFsY~~---~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL 484 (677)
+.+++++..--+-+ +.+.|++|+||++++|+.++|+|||||||||++|.+
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHH
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHH
Confidence 45888876543322 234799999999999999999999999999999999
No 151
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.59 E-value=4.6e-09 Score=107.43 Aligned_cols=53 Identities=15% Similarity=0.312 Sum_probs=35.7
Q ss_pred ccEEEEee-eEEeCCCCCccccceeeEEeC---CcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 435 GTIKFKNV-SLRYRDNWPLVLANVSFRINH---GENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 435 g~I~fknV-sFsY~~~~~~VLknISl~I~~---GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
..++++|+ +++|+++ .++|+|+||++++ |++++|+|++||||||+.++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~~-~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEE-QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCc-chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 35899999 9999333 4699999999999 9999999999999999999999854
No 152
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.55 E-value=2.7e-08 Score=118.37 Aligned_cols=52 Identities=19% Similarity=0.302 Sum_probs=40.7
Q ss_pred CCCCCChHHHHHHHHHHHHhccch--hh------------------------cccccce------ecccccccEEEEE--
Q psy845 626 QGDQLSLGEKQLLCLARALLRKTK--KK------------------------KKSGVNI------TRPVTSCDKVLVM-- 671 (677)
Q Consensus 626 ~G~~LSGGQRQRIaIARALLr~p~--IL------------------------~~~~~TI------LsTI~~aDrIlVL-- 671 (677)
...+||||||||++|||||.++|+ ++ ...|.|| +..++.||+|++|
T Consensus 461 ~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~aD~ii~lgp 540 (916)
T 3pih_A 461 SATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRNADHIIDIGP 540 (916)
T ss_dssp BGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHTCSEEEEEES
T ss_pred CcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEcC
Confidence 467999999999999999999876 44 1235673 3345679999999
Q ss_pred ----eCCeeC
Q psy845 672 ----DNGQAL 677 (677)
Q Consensus 672 ----d~GrIV 677 (677)
++|+++
T Consensus 541 gag~~~G~iv 550 (916)
T 3pih_A 541 GGGTNGGRVV 550 (916)
T ss_dssp SSGGGCSEEE
T ss_pred CcccCCCEEE
Confidence 888874
No 153
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.53 E-value=3.5e-09 Score=102.98 Aligned_cols=73 Identities=23% Similarity=0.288 Sum_probs=52.7
Q ss_pred eeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEE--EECCEecccccHHHhhhhccccc
Q psy845 441 NVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI--KIDDFDIASVELETLRSRLSVIP 518 (677)
Q Consensus 441 nVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I--~IdG~dI~~l~~~~~~~~i~~v~ 518 (677)
|++.++.+ ..+.+..++..++|+.++|+|||||||||++++|++.+. ..|.+ .+||.+++.- +++.+++.+
T Consensus 4 ~~~~~~~~--~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~~~----~~~~~~~~~ 76 (200)
T 3uie_A 4 NIKWHECS--VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVRHG----LNRDLSFKA 76 (200)
T ss_dssp ------CC--CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHTTT----TTTTCCSSH
T ss_pred CCcccccc--cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhhhH----hhcccCcCh
Confidence 44444332 346788888899999999999999999999999999987 78988 9998877542 334455554
Q ss_pred CC
Q psy845 519 QD 520 (677)
Q Consensus 519 q~ 520 (677)
++
T Consensus 77 ~~ 78 (200)
T 3uie_A 77 ED 78 (200)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 154
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.50 E-value=2.8e-08 Score=104.58 Aligned_cols=47 Identities=17% Similarity=0.147 Sum_probs=41.2
Q ss_pred eeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecc
Q psy845 457 VSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA 503 (677)
Q Consensus 457 ISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~ 503 (677)
++++.++|+.++++||+||||||+++.|++.+.+++|+|.+.+.|..
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~ 143 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF 143 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence 35556789999999999999999999999999999899998877653
No 155
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.46 E-value=2.2e-07 Score=101.18 Aligned_cols=42 Identities=24% Similarity=0.294 Sum_probs=34.1
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHH--HhcCCCCCcc-----EEEECCEe
Q psy845 460 RINHGENIGIVGRTGAGKSSLLVA--LFRLVELSSG-----QIKIDDFD 501 (677)
Q Consensus 460 ~I~~GE~VAIVGpSGSGKSTLi~L--L~r~y~p~~G-----~I~IdG~d 501 (677)
-+++|+.++|+||||||||||++. +.+..+++.| .+++|+.+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 589999999999999999999994 4566666444 77777755
No 156
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.45 E-value=6.6e-08 Score=98.82 Aligned_cols=33 Identities=30% Similarity=0.345 Sum_probs=28.8
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEE
Q psy845 461 INHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495 (677)
Q Consensus 461 I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I 495 (677)
+++|+.++|+||+|||||||++.+++... .|++
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~ 59 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPD 59 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCC
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCC
Confidence 78999999999999999999999998553 4554
No 157
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.44 E-value=4.5e-08 Score=95.08 Aligned_cols=63 Identities=11% Similarity=0.077 Sum_probs=47.7
Q ss_pred eeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCccccc
Q psy845 458 SFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 525 (677)
Q Consensus 458 Sl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~ 525 (677)
.++.++|+.++|+||+||||||++++|++.+ |.+.+||.++..- ....+...|+++|++..+.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~~~~ 85 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDEDRWP 85 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCccccc
Confidence 3566889999999999999999999999977 9999999887542 2233456899999876554
No 158
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.43 E-value=9.1e-08 Score=93.88 Aligned_cols=78 Identities=21% Similarity=0.186 Sum_probs=54.8
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCCCC-CccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCCchhHH
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLVEL-SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLV 540 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y~p-~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~~~~~~ 540 (677)
++|+.++|+|||||||||+++.|++.++| ..+.+.....
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr---------------------------------------- 45 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTR---------------------------------------- 45 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESS----------------------------------------
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccc----------------------------------------
Confidence 58999999999999999999999999986 3333322111
Q ss_pred HHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcc
Q psy845 541 ALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNL 590 (677)
Q Consensus 541 ~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI 590 (677)
+|..|+ .+|.++.-.+.+..++.+ .|+.+++.+++.+|.
T Consensus 46 ------~~~~~e--~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~~~ 84 (208)
T 3tau_A 46 ------LPREGE--QDGVDYYFRSREVFEQAI---KDGKMLEYAEYVGNY 84 (208)
T ss_dssp ------CCCTTC--CBTTTBEECCHHHHHHHH---HTTCEEEEEEETTEE
T ss_pred ------cCcCcc--cCCceeEEecHHHHHHHH---hcCcEEEEEEEcccc
Confidence 122332 455555555677776654 688888888877774
No 159
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.39 E-value=4.1e-08 Score=93.90 Aligned_cols=49 Identities=20% Similarity=0.055 Sum_probs=38.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCc
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP 521 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~ 521 (677)
|+.++|+|||||||||+++.|++ |.+|++.+||.++.+. ...++++|..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~ 50 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWE 50 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCcc
Confidence 78999999999999999999997 7789999998665432 2345565543
No 160
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.36 E-value=8.2e-08 Score=110.69 Aligned_cols=99 Identities=21% Similarity=0.129 Sum_probs=69.6
Q ss_pred eeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCC--CccEEEECCEecccccHHHhhhhcccccCCccccccccccCCCCC
Q psy845 458 SFRINHGENIGIVGRTGAGKSSLLVALFRLVEL--SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGK 535 (677)
Q Consensus 458 Sl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p--~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf~~~~~~n~~~~ 535 (677)
|+++++|++++|+|++|+|||||++.|++...+ ..|+| .+|.++.+.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~------------------------------ 51 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDY------------------------------ 51 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCC------------------------------
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccC------------------------------
Confidence 457789999999999999999999999987655 67777 667666665
Q ss_pred chhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccc--cCCCCChHHHHHHHHHccchhh
Q psy845 536 SSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLD--PFGRCHDTELWDALEKSHLKSK 613 (677)
Q Consensus 536 ~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~--~~~~~sdeeI~~Al~~a~l~ef 613 (677)
...+.++.+++.+|.+.++..+++.||. ++..--..+...+++.++..-+
T Consensus 52 ----------------------------~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~il 103 (665)
T 2dy1_A 52 ----------------------------TPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALV 103 (665)
T ss_dssp ----------------------------SHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEE
T ss_pred ----------------------------CHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchHHHHHHHHhhcCcEEE
Confidence 5556677777778877777777788873 3322122556667776665544
Q ss_pred Hh
Q psy845 614 VV 615 (677)
Q Consensus 614 I~ 615 (677)
+.
T Consensus 104 Vv 105 (665)
T 2dy1_A 104 AV 105 (665)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 161
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.36 E-value=1e-07 Score=90.39 Aligned_cols=66 Identities=18% Similarity=0.197 Sum_probs=46.1
Q ss_pred cceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccccc---HH----HhhhhcccccCCcc
Q psy845 455 ANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE---LE----TLRSRLSVIPQDPV 522 (677)
Q Consensus 455 knISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~---~~----~~~~~i~~v~q~~~ 522 (677)
+++++++.+| ..+|+|||||||||++++|.++..+..|+..-.+. .+++- .. ..+..|.+++|++.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~v~~~f~~~~ 90 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASR-ISDLIFAGSKNEPPAKYAEVAIYFNNED 90 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSS-GGGGBCCCC----CCSCEEEEEEEECTT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCccccccccc-chheeecccccCCCCceEEEEEEEeCCC
Confidence 5788999999 99999999999999999999988777765332221 11110 00 13456788888753
No 162
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.35 E-value=2.1e-07 Score=110.76 Aligned_cols=52 Identities=21% Similarity=0.132 Sum_probs=41.6
Q ss_pred ccEEEEeeeEEe-----CCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhc
Q psy845 435 GTIKFKNVSLRY-----RDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 435 g~I~fknVsFsY-----~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r 486 (677)
+.+++++..--. +++.+.|++|+||++++|+.++|+|||||||||++|++.+
T Consensus 639 ~~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 639 RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CEEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CcEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 467777753222 1123579999999999999999999999999999999865
No 163
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.34 E-value=1.6e-07 Score=91.02 Aligned_cols=39 Identities=33% Similarity=0.313 Sum_probs=24.8
Q ss_pred CCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 450 WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 450 ~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
..+.++|+||++++|+.++|+|++||||||+.+.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 457899999999999999999999999999999999765
No 164
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.32 E-value=3.1e-08 Score=99.28 Aligned_cols=39 Identities=26% Similarity=0.346 Sum_probs=34.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHh---cCCCCCccEEEECCEe
Q psy845 463 HGENIGIVGRTGAGKSSLLVALF---RLVELSSGQIKIDDFD 501 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~---r~y~p~~G~I~IdG~d 501 (677)
++++++|+||+||||||++++|+ |+..|+.|+|..+|.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~ 67 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIK 67 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHh
Confidence 47999999999999999999999 9999999988776644
No 165
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.30 E-value=1.1e-07 Score=92.34 Aligned_cols=30 Identities=33% Similarity=0.370 Sum_probs=27.7
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcCCC
Q psy845 460 RINHGENIGIVGRTGAGKSSLLVALFRLVE 489 (677)
Q Consensus 460 ~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~ 489 (677)
++++|++++|+|++||||||+++.|.+.++
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 577899999999999999999999999874
No 166
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.26 E-value=1.5e-07 Score=99.55 Aligned_cols=53 Identities=19% Similarity=0.190 Sum_probs=46.8
Q ss_pred cccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccc
Q psy845 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV 505 (677)
Q Consensus 453 VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l 505 (677)
+++++||++++|+.++++|++|+||||++..|++.+.+.+|+|.+.+.|....
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~ 146 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRA 146 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCH
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch
Confidence 45778888999999999999999999999999999999999999988887553
No 167
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.24 E-value=1.2e-07 Score=94.37 Aligned_cols=64 Identities=16% Similarity=0.082 Sum_probs=49.9
Q ss_pred eeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccc------cHHH----hhhhcccccCCccccc
Q psy845 458 SFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV------ELET----LRSRLSVIPQDPVLFN 525 (677)
Q Consensus 458 Sl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l------~~~~----~~~~i~~v~q~~~lf~ 525 (677)
+.+.++|+.++|+|++||||||++++|.+. +|+|.++|.|.... ...+ .++++++++|++.++.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 335578999999999999999999999997 78999999886432 1111 2467899999876654
No 168
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.23 E-value=1.8e-07 Score=101.64 Aligned_cols=54 Identities=24% Similarity=0.326 Sum_probs=50.0
Q ss_pred CccEEEEeeeEEeCCCCCcccc--------------ceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 434 QGTIKFKNVSLRYRDNWPLVLA--------------NVSFRINHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 434 ~g~I~fknVsFsY~~~~~~VLk--------------nISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
++.++|+||+|.||++ +.+|+ |+++.+.+||+++|+||+|+|||||++.|+|..
T Consensus 131 ~~ri~Fe~ltp~yP~e-r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 131 RNKILFENLTPLHANS-RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTSCCTTTSCEESCCS-BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCC-ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 5789999999999876 46899 999999999999999999999999999999975
No 169
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.23 E-value=9.7e-08 Score=108.01 Aligned_cols=45 Identities=29% Similarity=0.279 Sum_probs=40.0
Q ss_pred eEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCcc-EEE-ECCEecc
Q psy845 459 FRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG-QIK-IDDFDIA 503 (677)
Q Consensus 459 l~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G-~I~-IdG~dI~ 503 (677)
..+++|+.++|+|+|||||||++++|++.+.|++| ++. +||.+++
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~ 410 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVR 410 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHH
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHH
Confidence 36789999999999999999999999999999987 784 8987653
No 170
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.23 E-value=3.6e-07 Score=88.45 Aligned_cols=46 Identities=15% Similarity=0.051 Sum_probs=36.4
Q ss_pred cccceee-EEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCE
Q psy845 453 VLANVSF-RINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDF 500 (677)
Q Consensus 453 VLknISl-~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~ 500 (677)
.|+++.. .+++|+.++|+||+||||||+++.+++ .+..+.+++++.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~ 54 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTE 54 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESS
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECC
Confidence 5666654 689999999999999999999999999 444455565543
No 171
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.15 E-value=7.2e-07 Score=106.24 Aligned_cols=52 Identities=19% Similarity=0.267 Sum_probs=40.3
Q ss_pred CCCCCChHHHHHHHHHHHHhccc--hhh------------------------cccccce------ecccccccEEEEE--
Q psy845 626 QGDQLSLGEKQLLCLARALLRKT--KKK------------------------KKSGVNI------TRPVTSCDKVLVM-- 671 (677)
Q Consensus 626 ~G~~LSGGQRQRIaIARALLr~p--~IL------------------------~~~~~TI------LsTI~~aDrIlVL-- 671 (677)
...+||||||||++||+||..+| +++ ...|.|| +..++.||||++|
T Consensus 501 ~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lgp 580 (972)
T 2r6f_A 501 SAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGP 580 (972)
T ss_dssp BGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEEECS
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEeCC
Confidence 56799999999999999999985 444 1245662 3456779999999
Q ss_pred ----eCCeeC
Q psy845 672 ----DNGQAL 677 (677)
Q Consensus 672 ----d~GrIV 677 (677)
++|+++
T Consensus 581 gaG~~gG~iv 590 (972)
T 2r6f_A 581 GAGIHGGEVV 590 (972)
T ss_dssp SSGGGCCSEE
T ss_pred CccCCCCEEE
Confidence 688874
No 172
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.14 E-value=3e-07 Score=92.76 Aligned_cols=47 Identities=26% Similarity=0.420 Sum_probs=42.7
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhh
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 571 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~ 571 (677)
-+.+|.||||||||+++|.|+.+|++|+|+++|.++...+..++++.
T Consensus 34 ~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 34 VSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 46789999999999999999999999999999999999888776554
No 173
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.12 E-value=3.5e-07 Score=91.55 Aligned_cols=45 Identities=27% Similarity=0.401 Sum_probs=39.5
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHh
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR 569 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR 569 (677)
.+.+|.||||||||+++|.|+.+|++|+|.++|.++...+..+.+
T Consensus 33 ~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 77 (224)
T 2pcj_A 33 VSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELS 77 (224)
T ss_dssp EEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHH
Confidence 367899999999999999999999999999999998776665543
No 174
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.11 E-value=6.2e-07 Score=91.95 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=31.8
Q ss_pred cccccCCCCCchhHHHHHHhhhhc-cccccccccch
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELS-SGQIKIDDFDI 560 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~-~g~i~~~~~~~ 560 (677)
+.+|.||||||||+++|+|+++|+ +|+|.++|.++
T Consensus 29 ~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i 64 (261)
T 2eyu_A 29 LVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI 64 (261)
T ss_dssp EEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSC
T ss_pred EEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcc
Confidence 457999999999999999999999 99999998764
No 175
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.10 E-value=4.1e-07 Score=92.86 Aligned_cols=36 Identities=28% Similarity=0.554 Sum_probs=33.3
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccch
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 560 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 560 (677)
.+.+|.||||||||+++|.|+.+|++|+|.++|.++
T Consensus 36 ~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~ 71 (257)
T 1g6h_A 36 TLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI 71 (257)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC
Confidence 367899999999999999999999999999999874
No 176
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.09 E-value=5.2e-07 Score=97.60 Aligned_cols=43 Identities=23% Similarity=0.283 Sum_probs=38.6
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEE
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKI 497 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~I 497 (677)
.+++++|+++++|+.++|+||+||||||++++|++. .+|++..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~ 199 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALN 199 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEEC
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEE
Confidence 589999999999999999999999999999999985 4676544
No 177
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.09 E-value=5.1e-07 Score=91.61 Aligned_cols=36 Identities=31% Similarity=0.577 Sum_probs=33.2
Q ss_pred cccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 524 f~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+-+.+|.||||||||+++|.|+.+|++|+|.++|.+
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 61 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGAD 61 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE
Confidence 346789999999999999999999999999999976
No 178
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.08 E-value=4.6e-07 Score=93.88 Aligned_cols=36 Identities=36% Similarity=0.565 Sum_probs=33.8
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccch
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 560 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 560 (677)
-+.+|.||||||||+++|.|+.+|++|+|+++|.++
T Consensus 37 ~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i 72 (275)
T 3gfo_A 37 TAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPI 72 (275)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEEC
Confidence 467899999999999999999999999999999885
No 179
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.08 E-value=5e-07 Score=92.99 Aligned_cols=35 Identities=34% Similarity=0.455 Sum_probs=32.9
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
-+.+|.||||||||+++|.|+.+|++|+|.++|.+
T Consensus 40 ~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~ 74 (266)
T 4g1u_C 40 VAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQN 74 (266)
T ss_dssp EEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEE
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 36789999999999999999999999999999987
No 180
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.08 E-value=4.9e-07 Score=91.95 Aligned_cols=35 Identities=46% Similarity=0.673 Sum_probs=32.7
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
-+.+|.||||||||+++|.|+++|++|+|.++|.+
T Consensus 38 ~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~ 72 (247)
T 2ff7_A 38 IGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHD 72 (247)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 35789999999999999999999999999999976
No 181
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.07 E-value=6.1e-07 Score=90.80 Aligned_cols=35 Identities=31% Similarity=0.523 Sum_probs=32.8
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
-+.+|.||||||||+++|.|+++|++|+|.++|.+
T Consensus 31 ~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 65 (243)
T 1mv5_A 31 IAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQP 65 (243)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEE
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 36789999999999999999999999999999976
No 182
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.06 E-value=5.3e-07 Score=91.12 Aligned_cols=35 Identities=34% Similarity=0.542 Sum_probs=32.7
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
.+.+|.||||||||+++|.|+++|++|+|.++|.+
T Consensus 35 ~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 69 (240)
T 1ji0_A 35 VTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQD 69 (240)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE
Confidence 36789999999999999999999999999999976
No 183
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.06 E-value=5.3e-07 Score=92.49 Aligned_cols=37 Identities=32% Similarity=0.498 Sum_probs=34.6
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccchh
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA 561 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ 561 (677)
-+.+|.||||||||+++|.|+.+|++|+|.++|.++.
T Consensus 35 ~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~ 71 (262)
T 1b0u_A 35 ISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNIN 71 (262)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECC
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcc
Confidence 3678999999999999999999999999999999875
No 184
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.06 E-value=5.7e-07 Score=92.54 Aligned_cols=34 Identities=35% Similarity=0.630 Sum_probs=32.3
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|.||||||||+++|.|+++|++|+|.++|.+
T Consensus 54 ~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~ 87 (263)
T 2olj_A 54 VVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGIN 87 (263)
T ss_dssp EEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred EEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEE
Confidence 5789999999999999999999999999999976
No 185
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.05 E-value=3.6e-07 Score=95.26 Aligned_cols=62 Identities=11% Similarity=0.058 Sum_probs=54.1
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 504 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~ 504 (677)
+..+|+++.|++. . +++|++ +|++++++|++|+||||++..|++.+.+.+|+|.+.|.|.+.
T Consensus 77 ~~~~~l~~~~~~~--~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~ 138 (295)
T 1ls1_A 77 TVYEALKEALGGE--A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (295)
T ss_dssp HHHHHHHHHTTSS--C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred HHHHHHHHHHCCC--C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc
Confidence 5567788888543 1 788888 999999999999999999999999999999999999988865
No 186
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.05 E-value=2.6e-07 Score=103.31 Aligned_cols=62 Identities=23% Similarity=0.324 Sum_probs=50.4
Q ss_pred EEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccc
Q psy845 438 KFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV 505 (677)
Q Consensus 438 ~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l 505 (677)
+++++...|.+ +.+++++++++++| +.|+||+|+|||||++++++... .|.+.++|.++.+.
T Consensus 42 ~l~~lv~~l~~--~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 42 ELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEM 103 (499)
T ss_dssp HHHHHHHHHHC--GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSS
T ss_pred HHHHHHHHhhc--hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHh
Confidence 45566555643 35899999999999 99999999999999999999864 78888888776543
No 187
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.04 E-value=6.8e-07 Score=92.16 Aligned_cols=35 Identities=29% Similarity=0.497 Sum_probs=32.7
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
-+.+|.||||||||+++|.|+++|++|+|.+||.+
T Consensus 48 ~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~ 82 (271)
T 2ixe_A 48 TALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEP 82 (271)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEE
Confidence 36789999999999999999999999999999976
No 188
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.03 E-value=4.4e-07 Score=89.93 Aligned_cols=56 Identities=18% Similarity=0.237 Sum_probs=46.1
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccchhhhh-HHHHhhhccccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE-LETLRSRLSVIPQDPVLFNG 584 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~-~~~LR~~I~~V~Qd~~LFsg 584 (677)
-+.+|.||||||||+++|.|++ | |+|.+ |.+++..+ ....|+.++|++|++.+|..
T Consensus 26 ~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (218)
T 1z6g_A 26 LVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED 82 (218)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence 4678999999999999999999 5 99999 77775542 23467899999999988854
No 189
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.01 E-value=7.7e-07 Score=92.27 Aligned_cols=35 Identities=29% Similarity=0.281 Sum_probs=32.9
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccch
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 560 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 560 (677)
+.+|.||||||||+++|.|+.+|++|+|.++|.++
T Consensus 51 ~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~ 85 (279)
T 2ihy_A 51 ILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMP 85 (279)
T ss_dssp EEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCC
T ss_pred EEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEc
Confidence 57899999999999999999999999999999874
No 190
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.01 E-value=1.4e-06 Score=81.92 Aligned_cols=46 Identities=37% Similarity=0.423 Sum_probs=39.7
Q ss_pred cccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCcc--EEEECCEeccc
Q psy845 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG--QIKIDDFDIAS 504 (677)
Q Consensus 453 VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G--~I~IdG~dI~~ 504 (677)
+|+++ +|+.++|+||+|||||||++++++.+.+ +| .+++++.++.+
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~ 77 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPL 77 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCC
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhH
Confidence 56666 8999999999999999999999999987 58 88888876543
No 191
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.01 E-value=5.6e-07 Score=94.72 Aligned_cols=36 Identities=53% Similarity=0.827 Sum_probs=33.5
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccch
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 560 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 560 (677)
-+.+|.||||||||+++|+|+++|++|+|.+||.|+
T Consensus 83 vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i 118 (306)
T 3nh6_A 83 LALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDI 118 (306)
T ss_dssp EEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEET
T ss_pred EEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEc
Confidence 467899999999999999999999999999999873
No 192
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.99 E-value=9.3e-07 Score=90.54 Aligned_cols=34 Identities=32% Similarity=0.551 Sum_probs=32.2
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|.||||||||+++|.|+.+|++|+|.++|.+
T Consensus 45 ~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~ 78 (256)
T 1vpl_A 45 GLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKN 78 (256)
T ss_dssp EEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE
Confidence 5689999999999999999999999999999876
No 193
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.98 E-value=1.1e-06 Score=85.64 Aligned_cols=45 Identities=20% Similarity=0.158 Sum_probs=39.5
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccc
Q psy845 461 INHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV 505 (677)
Q Consensus 461 I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l 505 (677)
.++|+.++|+|++||||||+++.|.+.+++.+|++.+.|.|....
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~ 63 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIV 63 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccC
Confidence 567999999999999999999999999998999998877665444
No 194
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.96 E-value=8.9e-07 Score=89.41 Aligned_cols=55 Identities=18% Similarity=0.214 Sum_probs=37.4
Q ss_pred cccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHH--------HHhhhccccccc
Q psy845 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELE--------TLRSRLSVIPQD 578 (677)
Q Consensus 524 f~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~--------~LR~~I~~V~Qd 578 (677)
+.+.+|.||||||||+++|.++..|++|+|.++|.++...+.. ..|.++++|+|+
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 3467899999999999999999999999999999998554332 247789999986
No 195
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.96 E-value=1.2e-06 Score=94.85 Aligned_cols=37 Identities=35% Similarity=0.539 Sum_probs=34.0
Q ss_pred cccccccCCCCCchhHHHHHHhhhhccccccccccch
Q psy845 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 560 (677)
Q Consensus 524 f~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 560 (677)
+-+.+|.||||||||+++|.|+.+|++|+|++||.++
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~ 67 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRM 67 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred EEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEEC
Confidence 3467899999999999999999999999999999874
No 196
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.95 E-value=1.2e-06 Score=90.03 Aligned_cols=35 Identities=37% Similarity=0.488 Sum_probs=32.3
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
-+.+|.||||||||+++|.|+.+|++|+|.++|.+
T Consensus 36 ~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~ 70 (266)
T 2yz2_A 36 LLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGER 70 (266)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEE
Confidence 36789999999999999999999999999998864
No 197
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.95 E-value=1.2e-06 Score=94.25 Aligned_cols=37 Identities=32% Similarity=0.480 Sum_probs=34.2
Q ss_pred cccccccCCCCCchhHHHHHHhhhhccccccccccch
Q psy845 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 560 (677)
Q Consensus 524 f~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 560 (677)
+-+.+|.||||||||+++|.|+.+|++|+|++||.|+
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i 68 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTI 68 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEE
T ss_pred EEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence 3467899999999999999999999999999999985
No 198
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.95 E-value=1.2e-06 Score=89.10 Aligned_cols=35 Identities=31% Similarity=0.433 Sum_probs=32.4
Q ss_pred ccccccCCCCCchhHHHHHHh--hhhccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRL--VELSSGQIKIDDFD 559 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~--~~~~~g~i~~~~~~ 559 (677)
-+.+|.||||||||+++|.|+ ++|++|+|.++|.+
T Consensus 32 ~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~ 68 (250)
T 2d2e_A 32 HALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGEN 68 (250)
T ss_dssp EEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEE
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEE
Confidence 367899999999999999999 89999999999976
No 199
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.95 E-value=1.3e-06 Score=94.13 Aligned_cols=47 Identities=26% Similarity=0.486 Sum_probs=43.7
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhh
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 571 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~ 571 (677)
-+.+|.||||||||+++|.|+.+|++|+|.+||.|+...+.+++++.
T Consensus 57 ~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~ 103 (366)
T 3tui_C 57 YGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103 (366)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHH
T ss_pred EEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 46789999999999999999999999999999999999999887765
No 200
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.92 E-value=2.5e-06 Score=80.34 Aligned_cols=55 Identities=13% Similarity=0.085 Sum_probs=42.2
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhh-hhcccccCCcc
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR-SRLSVIPQDPV 522 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~-~~i~~v~q~~~ 522 (677)
.+|+.++|+|++||||||+++.|++.+ |.+.+|+.++..- ..++ ...|..+|+..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~~--~~~~~~~~g~~~~~~~ 61 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHPR--RNIEKMASGEPLNDDD 61 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCCH--HHHHHHHTTCCCCHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccch--HHHHHhhcCcCCCccc
Confidence 469999999999999999999999865 8899998776542 2222 25677777643
No 201
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.91 E-value=5.6e-06 Score=79.27 Aligned_cols=38 Identities=29% Similarity=0.426 Sum_probs=34.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCC-----------CccEEEECCEecc
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVEL-----------SSGQIKIDDFDIA 503 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~p-----------~~G~I~IdG~dI~ 503 (677)
+++++|++|||||||++.+++...+ +.|+|.++|.+++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~ 79 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 79 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEE
Confidence 7999999999999999999998765 5799999998764
No 202
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.91 E-value=1.7e-06 Score=92.90 Aligned_cols=36 Identities=25% Similarity=0.486 Sum_probs=33.2
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccch
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 560 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 560 (677)
.+.+|.||||||||+++|.|+.+|++|+|.+||.++
T Consensus 44 ~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i 79 (355)
T 1z47_A 44 VGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRV 79 (355)
T ss_dssp EEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEEC
Confidence 357899999999999999999999999999999863
No 203
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.91 E-value=1.5e-06 Score=93.71 Aligned_cols=38 Identities=37% Similarity=0.427 Sum_probs=35.0
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccchhh
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 562 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~ 562 (677)
.+.+|.||||||||+++|.|+.+|++|+|.+||.+++.
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~ 69 (372)
T 1g29_1 32 MILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVAD 69 (372)
T ss_dssp EEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEE
T ss_pred EEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECcc
Confidence 46789999999999999999999999999999998753
No 204
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.91 E-value=1.6e-06 Score=86.64 Aligned_cols=33 Identities=24% Similarity=0.397 Sum_probs=30.5
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 557 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~ 557 (677)
.+.+|.||||||||+++|.|+.+|++|+|.++|
T Consensus 38 ~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g 70 (214)
T 1sgw_A 38 VNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNG 70 (214)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCeEEEECC
Confidence 357899999999999999999999999999976
No 205
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.91 E-value=1.7e-06 Score=92.97 Aligned_cols=36 Identities=31% Similarity=0.543 Sum_probs=33.3
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccch
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 560 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 560 (677)
.+.+|.||||||||+++|.|+.+|++|+|.+||.++
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i 67 (359)
T 2yyz_A 32 VALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLV 67 (359)
T ss_dssp EEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred EEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEEC
Confidence 367899999999999999999999999999999873
No 206
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.90 E-value=3.3e-06 Score=80.41 Aligned_cols=62 Identities=16% Similarity=0.179 Sum_probs=51.9
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDP 592 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~ 592 (677)
-+.+|+||||||||+++|.|+. |++|+|.++|.++.+.. ..+ .+++|++.+|.-|+.||+..
T Consensus 36 v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~--~~~---~~~~q~~~l~~ltv~e~l~~ 97 (158)
T 1htw_A 36 VYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEY--NIA---GKMIYHFDLYRLADPEELEF 97 (158)
T ss_dssp EEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEE--EET---TEEEEEEECTTCSCTTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeec--cCC---CcceeccccccCCcHHHHHH
Confidence 3568999999999999999999 99999999999986431 112 27999999998899999953
No 207
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.90 E-value=1.7e-06 Score=88.88 Aligned_cols=34 Identities=32% Similarity=0.537 Sum_probs=31.6
Q ss_pred cccccCCCCCchhHHHHHHh--hhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRL--VELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~--~~~~~g~i~~~~~~ 559 (677)
+.+|.||||||||+++|.|+ ++|++|+|.++|.+
T Consensus 50 ~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~ 85 (267)
T 2zu0_C 50 AIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKD 85 (267)
T ss_dssp EEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEE
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEE
Confidence 56899999999999999999 68999999999976
No 208
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.89 E-value=1.9e-06 Score=92.66 Aligned_cols=36 Identities=33% Similarity=0.607 Sum_probs=33.3
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccch
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 560 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 560 (677)
.+.+|.||||||||+++|.|+.+|++|+|.+||.++
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i 67 (362)
T 2it1_A 32 MALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDV 67 (362)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred EEEECCCCchHHHHHHHHhcCCCCCceEEEECCEEC
Confidence 367899999999999999999999999999999873
No 209
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.88 E-value=2e-06 Score=87.77 Aligned_cols=33 Identities=33% Similarity=0.496 Sum_probs=31.2
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|.||||||||+++|.|+.+|+ |+|.++|.+
T Consensus 30 ~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~ 62 (249)
T 2qi9_C 30 HLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQP 62 (249)
T ss_dssp EEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEE
T ss_pred EEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEE
Confidence 678999999999999999999999 999999876
No 210
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.88 E-value=2.1e-06 Score=92.74 Aligned_cols=36 Identities=31% Similarity=0.468 Sum_probs=33.2
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccch
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 560 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 560 (677)
-+.+|.||||||||+++|.|+.+|++|+|++||.++
T Consensus 40 ~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i 75 (372)
T 1v43_A 40 LVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDV 75 (372)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred EEEECCCCChHHHHHHHHHcCCCCCceEEEECCEEC
Confidence 357899999999999999999999999999999873
No 211
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.86 E-value=1.6e-06 Score=92.81 Aligned_cols=35 Identities=37% Similarity=0.436 Sum_probs=32.9
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
.+.+|.||||||||+++|.|+.+|++|+|.+||.+
T Consensus 29 ~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~ 63 (348)
T 3d31_A 29 FVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKD 63 (348)
T ss_dssp EEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEE
T ss_pred EEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEE
Confidence 46789999999999999999999999999999986
No 212
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.86 E-value=2e-05 Score=84.66 Aligned_cols=39 Identities=38% Similarity=0.471 Sum_probs=32.0
Q ss_pred CcE-EEEEcCCCCChHHHHHHHhcCCC-----------CCccEEEECCEec
Q psy845 464 GEN-IGIVGRTGAGKSSLLVALFRLVE-----------LSSGQIKIDDFDI 502 (677)
Q Consensus 464 GE~-VAIVGpSGSGKSTLi~LL~r~y~-----------p~~G~I~IdG~dI 502 (677)
|-+ ++|||++|||||||+|.|+|... |..|++.++|.++
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v 228 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI 228 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE
Confidence 444 99999999999999999999765 6778999998765
No 213
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.84 E-value=1.5e-06 Score=90.61 Aligned_cols=58 Identities=21% Similarity=0.169 Sum_probs=38.1
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccc---cccchhhhhHHHHhhhcccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKI---DDFDIASVELETLRSRLSVIPQDPVLFN 583 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~---~~~~~~~~~~~~LR~~I~~V~Qd~~LFs 583 (677)
+.+|.||||||||+++|.|+.+|++|+|.+ +|.+++......-++++++|+|+|-+..
T Consensus 173 ~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~ 233 (301)
T 1u0l_A 173 TMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFAN 233 (301)
T ss_dssp EEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTT
T ss_pred EEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCc
Confidence 678999999999999999999999999999 8988876542111247999999997653
No 214
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=97.83 E-value=1.5e-05 Score=75.33 Aligned_cols=26 Identities=31% Similarity=0.088 Sum_probs=22.8
Q ss_pred CCCCCChHHHHHHHHH------HHHhccchhh
Q psy845 626 QGDQLSLGEKQLLCLA------RALLRKTKKK 651 (677)
Q Consensus 626 ~G~~LSGGQRQRIaIA------RALLr~p~IL 651 (677)
...+||||||||++|| ||++++|+++
T Consensus 54 ~~~~LSgGe~qrv~lA~~Lalaral~~~p~ll 85 (148)
T 1f2t_B 54 PLTFLSGGERIALGLAFRLAMSLYLAGEISLL 85 (148)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEE
T ss_pred ChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEE
Confidence 4679999999999876 9999999866
No 215
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.83 E-value=1.6e-06 Score=92.99 Aligned_cols=38 Identities=37% Similarity=0.530 Sum_probs=34.9
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccchhh
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 562 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~ 562 (677)
.+.+|.||||||||+++|.|+.+|++|+|.++|.+++.
T Consensus 34 ~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~ 71 (353)
T 1oxx_K 34 FGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVAS 71 (353)
T ss_dssp EEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEE
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcc
Confidence 36789999999999999999999999999999998753
No 216
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.82 E-value=5.3e-06 Score=79.89 Aligned_cols=59 Identities=22% Similarity=0.284 Sum_probs=42.3
Q ss_pred eEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhc--------CCCCCccEEEECCEecc
Q psy845 443 SLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFR--------LVELSSGQIKIDDFDIA 503 (677)
Q Consensus 443 sFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r--------~y~p~~G~I~IdG~dI~ 503 (677)
+++|++-. .+++++|++.+++ +++++|++|+|||||++.+.+ -..++.+.+.++|.++.
T Consensus 6 ~~~~~~~~-~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~ 72 (198)
T 1f6b_A 6 DWIYSGFS-SVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFT 72 (198)
T ss_dssp -------C-HHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEE
T ss_pred HHHHHHHH-HHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEE
Confidence 46677653 5899999998887 699999999999999999987 23345678888886554
No 217
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.82 E-value=5.2e-06 Score=86.54 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=36.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhc-CCCCCccEEEECCEecccccHHHhhhhcccccCCcccc
Q psy845 464 GENIGIVGRTGAGKSSLLVALFR-LVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF 524 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r-~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~lf 524 (677)
+..+.|+||+|+||||+++.++| ++.|+.|++.++|.+...-. .-+.++++++|++++.
T Consensus 36 ~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 95 (354)
T 1sxj_E 36 LPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS--NRKLELNVVSSPYHLE 95 (354)
T ss_dssp CCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc--cccceeeeecccceEE
Confidence 34499999999999999999999 89999999999998875432 2378899999988753
No 218
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.81 E-value=2.2e-06 Score=90.86 Aligned_cols=55 Identities=20% Similarity=0.254 Sum_probs=43.8
Q ss_pred eeEEeCCCCCccccceeeEEeCCc------EEEEEcCCCCChHHHHHHHhcCCC--CCccEEEEC
Q psy845 442 VSLRYRDNWPLVLANVSFRINHGE------NIGIVGRTGAGKSSLLVALFRLVE--LSSGQIKID 498 (677)
Q Consensus 442 VsFsY~~~~~~VLknISl~I~~GE------~VAIVGpSGSGKSTLi~LL~r~y~--p~~G~I~Id 498 (677)
+++.|.+ .+.|++++.++.+++ .+||+|||||||||++++|.++++ |++|++.+-
T Consensus 66 l~~~~~~--~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i 128 (321)
T 3tqc_A 66 LSFYVTA--RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVI 128 (321)
T ss_dssp HHHHHHH--HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEE
T ss_pred HHHhhcc--hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEE
Confidence 3444543 257888888888887 899999999999999999999987 567775543
No 219
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.80 E-value=9.3e-06 Score=77.82 Aligned_cols=37 Identities=30% Similarity=0.495 Sum_probs=31.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC-----CC------CccEEEECCEec
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV-----EL------SSGQIKIDDFDI 502 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y-----~p------~~G~I~IdG~dI 502 (677)
+++++|++|||||||++.++|.. .| ..|+|.++|.++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 54 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 54 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence 79999999999999999999973 23 367899999765
No 220
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.79 E-value=1.1e-05 Score=88.13 Aligned_cols=58 Identities=28% Similarity=0.389 Sum_probs=35.8
Q ss_pred cccccCCCCCchhHHHHHHhh------------hhccccccccccchhhhhHHHHhhhcccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLV------------ELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 583 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~------------~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs 583 (677)
+.+|+||||||||+++|+|.. ++.+|++.++|.++.-.+....|+..++.+|+...|.
T Consensus 184 aivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~ 253 (439)
T 1mky_A 184 AIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYS 253 (439)
T ss_dssp EEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSC
T ss_pred EEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHH
Confidence 467999999999999999984 3778999999987765555555666666666655553
No 221
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.78 E-value=3.5e-06 Score=86.26 Aligned_cols=34 Identities=38% Similarity=0.674 Sum_probs=31.2
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
.+.+|.||||||||+++|.|+++| +|+|.+||.+
T Consensus 49 ~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~ 82 (260)
T 2ghi_A 49 CALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKN 82 (260)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEE
T ss_pred EEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEE
Confidence 367899999999999999999997 8999999976
No 222
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.78 E-value=1.5e-05 Score=95.35 Aligned_cols=40 Identities=28% Similarity=0.346 Sum_probs=33.8
Q ss_pred ccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHH
Q psy845 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLL 481 (677)
Q Consensus 435 g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi 481 (677)
..|++++.. +.=|||||++|++++.|.|.|.||||||||+
T Consensus 24 ~~I~i~gar-------~hNLkni~v~iP~~~lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 24 DRLIVKGAR-------EHNLRSVDLDLPRDALIVFTGLSGSGKSSLA 63 (993)
T ss_dssp CEEEEEEEC-------SSSCCSEEEEEESSSEEEEEESTTSSHHHHH
T ss_pred CcEEEeccc-------ccccCceeeeccCCCEEEEECCCCCcHHHHH
Confidence 347766642 2459999999999999999999999999996
No 223
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.78 E-value=2.6e-06 Score=80.88 Aligned_cols=36 Identities=31% Similarity=0.563 Sum_probs=33.0
Q ss_pred eeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCcc
Q psy845 458 SFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493 (677)
Q Consensus 458 Sl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G 493 (677)
|+++++|+.++|+||+|+|||||++.+++...|++|
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g 67 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG 67 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence 567788999999999999999999999999987777
No 224
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.76 E-value=1.2e-05 Score=87.53 Aligned_cols=43 Identities=23% Similarity=0.415 Sum_probs=38.6
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhc------------CCCCCccEEEECCEec
Q psy845 460 RINHGENIGIVGRTGAGKSSLLVALFR------------LVELSSGQIKIDDFDI 502 (677)
Q Consensus 460 ~I~~GE~VAIVGpSGSGKSTLi~LL~r------------~y~p~~G~I~IdG~dI 502 (677)
++++|+++||||++|||||||+|.|+| ..+|+.|.+.++|..+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~ 70 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERF 70 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcch
Confidence 467899999999999999999999999 6789999999988543
No 225
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.75 E-value=5.8e-06 Score=85.16 Aligned_cols=34 Identities=26% Similarity=0.328 Sum_probs=20.9
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
+.+|+||||||||+++|+|+.+|++|++.++|.+
T Consensus 6 ~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~ 39 (270)
T 3sop_A 6 MVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEK 39 (270)
T ss_dssp EEEESSSSSHHHHHHHHHHHHC------------
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCCccccCCcc
Confidence 5689999999999999999999999999998865
No 226
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.75 E-value=4.2e-06 Score=86.06 Aligned_cols=34 Identities=38% Similarity=0.546 Sum_probs=31.4
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 559 (677)
-+.+|.||||||||+++|.|+. |++|+|.++|.+
T Consensus 33 ~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~ 66 (263)
T 2pjz_A 33 VIILGPNGSGKTTLLRAISGLL-PYSGNIFINGME 66 (263)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEE
T ss_pred EEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEE
Confidence 3568999999999999999999 999999999876
No 227
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.72 E-value=6.6e-06 Score=93.59 Aligned_cols=66 Identities=18% Similarity=0.221 Sum_probs=55.9
Q ss_pred CccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCc-cEEEECCEecccccHHHhhhhcccccCCc
Q psy845 451 PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS-GQIKIDDFDIASVELETLRSRLSVIPQDP 521 (677)
Q Consensus 451 ~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~-G~I~IdG~dI~~l~~~~~~~~i~~v~q~~ 521 (677)
..+++++++.+++|+.+.|+||+|+||||+++.+++..++.. |.+.+++.+.... ...++++|+..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~ 113 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQ 113 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecch
Confidence 368999999999999999999999999999999999999988 7899988776543 45566666554
No 228
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.70 E-value=5.8e-06 Score=78.32 Aligned_cols=42 Identities=26% Similarity=0.374 Sum_probs=34.9
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCCCCCcc--EEEECCEeccc
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLVELSSG--QIKIDDFDIAS 504 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G--~I~IdG~dI~~ 504 (677)
++|+.++++|++||||||+.++|.+.+.+ .| .+.+||.++++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~~ 46 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIRQ 46 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHHH
Confidence 47999999999999999999999998766 56 67777766544
No 229
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.69 E-value=8.7e-06 Score=82.54 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+-.++|+||+||||||+.+.|++.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998543
No 230
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.69 E-value=4.8e-06 Score=88.18 Aligned_cols=52 Identities=23% Similarity=0.279 Sum_probs=46.7
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecc
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA 503 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~ 503 (677)
.++++++++.++|++++++|++|+||||+++.|++.+.+.+|++.+-+.|..
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 5889999999999999999999999999999999999888888887666654
No 231
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.69 E-value=1.6e-05 Score=93.52 Aligned_cols=50 Identities=16% Similarity=0.168 Sum_probs=40.8
Q ss_pred ccEEEEeeeEEeCC-----CCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcC
Q psy845 435 GTIKFKNVSLRYRD-----NWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 435 g~I~fknVsFsY~~-----~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+.+++++.. .|- +++.|++|+||+ ++|+.++|+|||||||||++|+++|+
T Consensus 576 ~~i~i~~~r--HP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 576 PGIRITEGR--HPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEEEC--CTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEecc--ccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 357776652 221 234699999999 99999999999999999999999995
No 232
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.62 E-value=1.4e-05 Score=89.15 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=37.2
Q ss_pred cccccccCCCCCchhHHHHHHhhhhccccccccccchhhhh
Q psy845 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE 564 (677)
Q Consensus 524 f~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~ 564 (677)
..+.+|.||||||||+++|.|+.+|++|+|.++|.++...+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~ 71 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGST 71 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCC
T ss_pred eEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCc
Confidence 44678999999999999999999999999999999987654
No 233
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.60 E-value=3.8e-05 Score=73.25 Aligned_cols=50 Identities=28% Similarity=0.420 Sum_probs=31.1
Q ss_pred cccceeeEEeCCcEEEEEcCCCCChHHHHHHHhc----C----CCCCccEEEECCEecc
Q psy845 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFR----L----VELSSGQIKIDDFDIA 503 (677)
Q Consensus 453 VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r----~----y~p~~G~I~IdG~dI~ 503 (677)
+++++|++.++. +++++|++|+|||||++.+.+ - ..++.+++.++|..+.
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~ 70 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFT 70 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEE
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEE
Confidence 789999998877 899999999999999999997 2 3344567778876554
No 234
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.59 E-value=7.4e-06 Score=80.04 Aligned_cols=45 Identities=27% Similarity=0.343 Sum_probs=39.7
Q ss_pred eEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCcc--EEEECCEecc
Q psy845 459 FRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG--QIKIDDFDIA 503 (677)
Q Consensus 459 l~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G--~I~IdG~dI~ 503 (677)
..+++|+.++++|++||||||+.+.|.+.++|+.| .+.+||.+++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 45678999999999999999999999999988889 8999876554
No 235
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.58 E-value=1.4e-05 Score=77.75 Aligned_cols=29 Identities=17% Similarity=0.348 Sum_probs=26.2
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhcCCC
Q psy845 461 INHGENIGIVGRTGAGKSSLLVALFRLVE 489 (677)
Q Consensus 461 I~~GE~VAIVGpSGSGKSTLi~LL~r~y~ 489 (677)
..+|..++++|||||||||+.+.|...++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46799999999999999999999998764
No 236
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.57 E-value=1.2e-05 Score=87.46 Aligned_cols=35 Identities=49% Similarity=0.875 Sum_probs=32.1
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccch
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 560 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 560 (677)
-+.+|.||||||||+++|.|+.+ ++|+|++||.|+
T Consensus 50 ~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i 84 (390)
T 3gd7_A 50 VGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSW 84 (390)
T ss_dssp EEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBT
T ss_pred EEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEEC
Confidence 46789999999999999999998 999999999873
No 237
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.57 E-value=9.9e-06 Score=81.72 Aligned_cols=28 Identities=43% Similarity=0.660 Sum_probs=26.1
Q ss_pred ccccccCCCCCchhHHHHHHhhhhcccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQ 552 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~ 552 (677)
.+.+|.||||||||+++|.|+++|++|+
T Consensus 34 ~~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 61 (237)
T 2cbz_A 34 VAVVGQVGCGKSSLLSALLAEMDKVEGH 61 (237)
T ss_dssp EEEECSTTSSHHHHHHHHTTCSEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 3678999999999999999999999996
No 238
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.56 E-value=2.7e-05 Score=72.79 Aligned_cols=33 Identities=33% Similarity=0.384 Sum_probs=28.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECC
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 499 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG 499 (677)
.|+.++|+||+||||||+.++|++.+.+ ..+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4789999999999999999999997754 55654
No 239
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.55 E-value=1.1e-05 Score=80.82 Aligned_cols=28 Identities=43% Similarity=0.657 Sum_probs=26.1
Q ss_pred ccccccCCCCCchhHHHHHHhhhhcccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQ 552 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~ 552 (677)
-+.+|.||||||||+++|.|+++|++|+
T Consensus 37 ~~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 64 (229)
T 2pze_A 37 LAVAGSTGAGKTSLLMMIMGELEPSEGK 64 (229)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCCCcCCccE
Confidence 3678999999999999999999999996
No 240
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.55 E-value=5.3e-05 Score=71.22 Aligned_cols=41 Identities=41% Similarity=0.516 Sum_probs=31.6
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCCCC------------CccEEEECCEec
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLVEL------------SSGQIKIDDFDI 502 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y~p------------~~G~I~IdG~dI 502 (677)
++|.++++||++|+|||||++.+++...+ ..+.+.++|.++
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 54 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPL 54 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEE
Confidence 47899999999999999999999986421 246777777654
No 241
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.55 E-value=2.5e-05 Score=77.53 Aligned_cols=124 Identities=18% Similarity=0.108 Sum_probs=65.4
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhcc-ccCCCCChHHHHHH
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNL-DPFGRCHDTELWDA 604 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI-~~~~~~sdeeI~~A 604 (677)
+.+|.||||||||+++|.|+ +|++|+|.. .++. .+....|++++||||++ +||+ .+.... .+.+...
T Consensus 26 ~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~-~~~~~~~~~ig~v~q~~-------~enl~~~~~~~-~~~~~~~ 93 (208)
T 3b85_A 26 FGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILT-RPAVEAGEKLGFLPGTL-------NEKIDPYLRPL-HDALRDM 93 (208)
T ss_dssp EEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEE-ECSCCTTCCCCSSCC-------------CTTTHHH-HHHHTTT
T ss_pred EEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEec-CCchhhhcceEEecCCH-------HHHHHHHHHHH-HHHHHHh
Confidence 56899999999999999999 999999953 3332 22235688999999998 7777 332100 0000000
Q ss_pred HHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhhc------------------c-cccce--ecccc
Q psy845 605 LEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKK------------------K-SGVNI--TRPVT 663 (677)
Q Consensus 605 l~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL~------------------~-~~~TI--LsTI~ 663 (677)
.+...+.+.++ . ++ |||||++||||++++|+++. . +++|| .|...
T Consensus 94 ~~~~~~~~~l~----------~--gl--Gq~qrv~lAraL~~~p~lllLDEPts~~~~~l~~~l~~l~~g~tiivtHd~~ 159 (208)
T 3b85_A 94 VEPEVIPKLME----------A--GI--VEVAPLAYMRGRTLNDAFVILDEAQNTTPAQMKMFLTRLGFGSKMVVTGDIT 159 (208)
T ss_dssp SCTTHHHHHHH----------T--TS--EEEEEGGGGTTCCBCSEEEEECSGGGCCHHHHHHHHTTBCTTCEEEEEEC--
T ss_pred ccHHHHHHHHH----------h--CC--chHHHHHHHHHHhcCCCEEEEeCCccccHHHHHHHHHHhcCCCEEEEECCHH
Confidence 00001111111 1 11 99999999999999999761 1 24443 44455
Q ss_pred cccEEEEEeCCe
Q psy845 664 SCDKVLVMDNGQ 675 (677)
Q Consensus 664 ~aDrIlVLd~Gr 675 (677)
.+|++...+||.
T Consensus 160 ~~~~~~~~~~G~ 171 (208)
T 3b85_A 160 QVDLPGGQKSGL 171 (208)
T ss_dssp ----------CC
T ss_pred HHhCcCCCCCcH
Confidence 577777777774
No 242
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.54 E-value=1.1e-05 Score=86.78 Aligned_cols=42 Identities=21% Similarity=0.285 Sum_probs=35.6
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEE-EECCEe
Q psy845 460 RINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI-KIDDFD 501 (677)
Q Consensus 460 ~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I-~IdG~d 501 (677)
-+++|+.+.|.||+|||||||+..+++...+.+|.+ ++|+.+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 388999999999999999999999999887777754 666543
No 243
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.53 E-value=1.5e-05 Score=89.80 Aligned_cols=79 Identities=18% Similarity=0.243 Sum_probs=50.7
Q ss_pred EEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhccccc
Q psy845 439 FKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIP 518 (677)
Q Consensus 439 fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~ 518 (677)
.+++..+|.+ ..+++++++++ +|+.+.++||+|+||||+++++++...+..|+|..+|..-..-.....++.+|.++
T Consensus 86 ~~~vk~~i~~--~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~ 162 (543)
T 3m6a_A 86 LEKVKERILE--YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMP 162 (543)
T ss_dssp CHHHHHHHHH--HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-------------------
T ss_pred HHHHHHHHHH--HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCc
Confidence 4566666643 25788999988 89999999999999999999999999999999998885432211222345566665
Q ss_pred CC
Q psy845 519 QD 520 (677)
Q Consensus 519 q~ 520 (677)
+.
T Consensus 163 ~~ 164 (543)
T 3m6a_A 163 GR 164 (543)
T ss_dssp -C
T ss_pred hH
Confidence 54
No 244
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.53 E-value=4.1e-05 Score=83.56 Aligned_cols=58 Identities=28% Similarity=0.373 Sum_probs=37.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCC------------CCCccEEEECCEecccccHHHhhhhcccccCCcc
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRLV------------ELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV 522 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~y------------~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~~ 522 (677)
-++||||++|+|||||+|.|+|.. +|.+|++.++|.++.-++..-.++..++.+|+..
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e 250 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVE 250 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------C
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHH
Confidence 489999999999999999999985 3788999999997755543334444444444433
No 245
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.53 E-value=1.7e-05 Score=84.36 Aligned_cols=43 Identities=21% Similarity=0.337 Sum_probs=37.3
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccc
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 504 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~ 504 (677)
++|.+++|+|++|||||||+|.|.|...+++|+|.+.+.|...
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 4578999999999999999999999998999999988877654
No 246
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.52 E-value=1.9e-05 Score=74.70 Aligned_cols=88 Identities=17% Similarity=0.172 Sum_probs=53.4
Q ss_pred cccccccCCCCCchhHHHHHHhhhhcccccccccc--ch-hhhh---HHHHhhhccccccccc----------ccccchh
Q psy845 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDF--DI-ASVE---LETLRSRLSVIPQDPV----------LFNGTIR 587 (677)
Q Consensus 524 f~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~--~~-~~~~---~~~LR~~I~~V~Qd~~----------LFsgTIr 587 (677)
++..+|+||||||||+.+|..+..++.|...-.+. +. ..-. ...-+..+.++.|++. ....++.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~i~r~~~ 107 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPIDEDEVVIRRRVY 107 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSSSSEEEEEEEEC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccCCcEEEEEEEEE
Confidence 56788999999999999999998888875443331 11 1100 0023567888888853 2222222
Q ss_pred hc----ccc-CCCCChHHHHHHHHHccch
Q psy845 588 YN----LDP-FGRCHDTELWDALEKSHLK 611 (677)
Q Consensus 588 EN----I~~-~~~~sdeeI~~Al~~a~l~ 611 (677)
++ ... +...+.+++.+.++..++.
T Consensus 108 ~~~~~~~~i~g~~~~~~~~~~~l~~~~l~ 136 (182)
T 3kta_A 108 PDGRSSYWLNGRRATRSEILDILTAAMIS 136 (182)
T ss_dssp TTSCEEEEETTEEECHHHHHHHHHHTTCC
T ss_pred eCCcEEEEECCeEcCHHHHHHHHHHcCCC
Confidence 11 111 1234667788888877765
No 247
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.50 E-value=1.7e-05 Score=84.19 Aligned_cols=45 Identities=24% Similarity=0.339 Sum_probs=34.8
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhc--CCCCCccEEEECC
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFR--LVELSSGQIKIDD 499 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r--~y~p~~G~I~IdG 499 (677)
.+|++++++++ .|++||++|||||||++.|.| +.++.+|.+.-.+
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p 71 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRP 71 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcc
Confidence 48999999998 999999999999999999999 7777777664333
No 248
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.46 E-value=4.2e-05 Score=76.60 Aligned_cols=36 Identities=14% Similarity=0.281 Sum_probs=31.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECC
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 499 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG 499 (677)
+|..++|.|++||||||+++.|...+.+ .+++....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~ 60 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTR 60 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEEC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeec
Confidence 7999999999999999999999999988 67775543
No 249
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.44 E-value=2.6e-05 Score=81.40 Aligned_cols=43 Identities=30% Similarity=0.356 Sum_probs=37.6
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCCCCCcc-EEEECCEeccc
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLVELSSG-QIKIDDFDIAS 504 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G-~I~IdG~dI~~ 504 (677)
++|++++++||+||||||+++.|++.+.+++| +|.+-+.|...
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r 146 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR 146 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCccc
Confidence 47999999999999999999999999998888 78876666643
No 250
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.44 E-value=2.9e-05 Score=84.89 Aligned_cols=34 Identities=29% Similarity=0.355 Sum_probs=30.4
Q ss_pred cccccccCCCCCchhHHHHHHhhhhccccccccc
Q psy845 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 557 (677)
Q Consensus 524 f~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~ 557 (677)
+-+.+|+||||||||+++|+|+.+|++|+|.++|
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g 104 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGV 104 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEEECC
Confidence 4577899999999999999999999999877743
No 251
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.41 E-value=1.8e-05 Score=86.85 Aligned_cols=63 Identities=11% Similarity=0.035 Sum_probs=52.2
Q ss_pred EEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccc
Q psy845 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV 505 (677)
Q Consensus 437 I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l 505 (677)
+..++++..|++.. +++|++ +|+.++++|++||||||++..|++.+.+.+|+|.+.+.|...-
T Consensus 77 ~v~~~L~~~~~~~~----~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~ 139 (425)
T 2ffh_A 77 TVYEALKEALGGEA----RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRP 139 (425)
T ss_dssp HHHHHHHHHTTSSC----CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCH
T ss_pred HHHHHHHHHhCCCc----ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCc
Confidence 34456677775431 678888 8999999999999999999999999999999999988887653
No 252
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.38 E-value=2.4e-05 Score=81.56 Aligned_cols=28 Identities=43% Similarity=0.657 Sum_probs=26.1
Q ss_pred ccccccCCCCCchhHHHHHHhhhhcccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQ 552 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~ 552 (677)
-+.+|.||||||||+++|.|+++|++|+
T Consensus 67 ~~i~G~NGsGKSTLlk~l~Gl~~p~~G~ 94 (290)
T 2bbs_A 67 LAVAGSTGAGKTSLLMMIMGELEPSEGK 94 (290)
T ss_dssp EEEEESTTSSHHHHHHHHTTSSCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCCCcE
Confidence 3678999999999999999999999996
No 253
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.35 E-value=5e-05 Score=74.23 Aligned_cols=99 Identities=23% Similarity=0.211 Sum_probs=72.7
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHH
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDAL 605 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al 605 (677)
+.+|.||||||||+++|.++++ ++| +.+||++..+.+ .+++++++++|+. +++ ++|+.......+
T Consensus 5 ~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~~~~~~------- 69 (189)
T 2i3b_A 5 FLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRVGLEPP------- 69 (189)
T ss_dssp EEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEECCCCCC-------
T ss_pred EEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhcccccCC-------
Confidence 4579999999999999999999 999 999999986554 5799999999997 554 466642110000
Q ss_pred HHccchhhHhhhhcccCCCC--CCCCCChHHHHHH-HHHH---HHhccchhh
Q psy845 606 EKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLL-CLAR---ALLRKTKKK 651 (677)
Q Consensus 606 ~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRI-aIAR---ALLr~p~IL 651 (677)
+...+..+ .|..+|+|||+++ +++| |+.++|+++
T Consensus 70 ------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvl 109 (189)
T 2i3b_A 70 ------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVC 109 (189)
T ss_dssp ------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCE
T ss_pred ------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEE
Confidence 00011233 4678999999998 5566 688888876
No 254
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.31 E-value=2.6e-05 Score=74.29 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
.++|+|++||||||+.+.|++-+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999844
No 255
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.29 E-value=3e-05 Score=74.72 Aligned_cols=38 Identities=18% Similarity=0.358 Sum_probs=28.3
Q ss_pred cccccCCCCCchhHHHHHHhhhhc---cccccccccchhhh
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELS---SGQIKIDDFDIASV 563 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~---~g~i~~~~~~~~~~ 563 (677)
+.+|.||||||||++.|+|+++|+ +|+|++||.++.+.
T Consensus 6 ~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~ 46 (171)
T 2f1r_A 6 SIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEI 46 (171)
T ss_dssp EEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--------
T ss_pred EEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccC
Confidence 457999999999999999999999 99999998876543
No 256
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.26 E-value=4.9e-05 Score=80.42 Aligned_cols=94 Identities=16% Similarity=0.238 Sum_probs=68.7
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHH
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDAL 605 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al 605 (677)
+.+|.||||||||+++|+|+++|++|.|.++|.+-. ....+|+++++++
T Consensus 175 ~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~--~~~~~~~~i~~~~----------------------------- 223 (330)
T 2pt7_A 175 IVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEI--VFKHHKNYTQLFF----------------------------- 223 (330)
T ss_dssp EEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCC--CCSSCSSEEEEEC-----------------------------
T ss_pred EEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecc--ccccchhEEEEEe-----------------------------
Confidence 567999999999999999999999999999987621 1111222222221
Q ss_pred HHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh----------------ccccc-c-e-----eccc
Q psy845 606 EKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK----------------KKSGV-N-I-----TRPV 662 (677)
Q Consensus 606 ~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL----------------~~~~~-T-I-----LsTI 662 (677)
| |||+||++||||+.++|+++ ..+++ | + .++.
T Consensus 224 ---------------------g----gg~~~r~~la~aL~~~p~ilildE~~~~e~~~~l~~~~~g~~tvi~t~H~~~~~ 278 (330)
T 2pt7_A 224 ---------------------G----GNITSADCLKSCLRMRPDRIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGSSE 278 (330)
T ss_dssp ---------------------B----TTBCHHHHHHHHTTSCCSEEEECCCCSTHHHHHHHHHHTTCCCEEEEEECSSHH
T ss_pred ---------------------C----CChhHHHHHHHHhhhCCCEEEEcCCChHHHHHHHHHHhcCCCEEEEEEcccHHH
Confidence 1 89999999999999999965 12333 4 2 3345
Q ss_pred ccccEEEEEeCCe
Q psy845 663 TSCDKVLVMDNGQ 675 (677)
Q Consensus 663 ~~aDrIlVLd~Gr 675 (677)
+.||||++|++|+
T Consensus 279 ~~~dri~~l~~g~ 291 (330)
T 2pt7_A 279 EAFIRLANMSSSN 291 (330)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHhhhheehhcCC
Confidence 5689999998875
No 257
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.25 E-value=3.9e-05 Score=75.23 Aligned_cols=67 Identities=10% Similarity=0.085 Sum_probs=42.5
Q ss_pred cccce-eeEEeCCcEEEEEcCCCCChHHHHH-HHhcCCCCCccEEEECCEecccccHHHhhhhcccccCC
Q psy845 453 VLANV-SFRINHGENIGIVGRTGAGKSSLLV-ALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQD 520 (677)
Q Consensus 453 VLknI-Sl~I~~GE~VAIVGpSGSGKSTLi~-LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~ 520 (677)
.|+++ +--+++|+.++|.||+||||||++. ++....+...+.+++++.+-.+ ...+..+++|+.+|+
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~-~~~~~~~~~g~~~~~ 79 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPV-QVRQNMAQFGWDVKP 79 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHH-HHHHHHHTTTCCCHH
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHH-HHHHHHHHcCCCHHH
Confidence 45555 5568999999999999999999954 5455544444566666543211 112223456666654
No 258
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.25 E-value=4.6e-05 Score=77.69 Aligned_cols=28 Identities=32% Similarity=0.547 Sum_probs=25.9
Q ss_pred ccccccCCCCCchhHHHHHHhhhhcccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQ 552 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~ 552 (677)
-+.+|.||||||||+++|.|+.+|++|+
T Consensus 34 ~~l~G~nGsGKSTLl~~l~Gl~~p~~G~ 61 (253)
T 2nq2_C 34 LAVLGQNGCGKSTLLDLLLGIHRPIQGK 61 (253)
T ss_dssp EEEECCSSSSHHHHHHHHTTSSCCSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 3678999999999999999999999995
No 259
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.24 E-value=3.9e-05 Score=81.99 Aligned_cols=56 Identities=27% Similarity=0.393 Sum_probs=36.9
Q ss_pred CCccEEEEeeeEEeCCCCCccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEE
Q psy845 433 RQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496 (677)
Q Consensus 433 ~~g~I~fknVsFsY~~~~~~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~ 496 (677)
..+.+.++|++..|... .++++++++| ++||++|+|||||++.|++...+..|.+.
T Consensus 14 ~~~~v~~~~l~~~~~~k--~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~ 69 (361)
T 2qag_A 14 TPGYVGFANLPNQVHRK--SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIP 69 (361)
T ss_dssp -------CCHHHHHHTH--HHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-------
T ss_pred CCceEEeccchHHhCCe--eecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCccc
Confidence 34679999999988653 5899999965 99999999999999999987665555543
No 260
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=97.23 E-value=0.00018 Score=69.50 Aligned_cols=26 Identities=27% Similarity=0.158 Sum_probs=21.2
Q ss_pred CCCCCChHHHHHHHHHHHHhc----cchhh
Q psy845 626 QGDQLSLGEKQLLCLARALLR----KTKKK 651 (677)
Q Consensus 626 ~G~~LSGGQRQRIaIARALLr----~p~IL 651 (677)
...+||||||||++||||+.. +|+++
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~l 90 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFY 90 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEE
Confidence 457899999999999999974 45654
No 261
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.19 E-value=5e-05 Score=72.31 Aligned_cols=42 Identities=21% Similarity=0.307 Sum_probs=34.6
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEE-EECCEec
Q psy845 461 INHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI-KIDDFDI 502 (677)
Q Consensus 461 I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I-~IdG~dI 502 (677)
.++|..+.++|++||||||+.+.|++.+.+.+|.+ .+|+.++
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 45799999999999999999999999888777765 4565444
No 262
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.18 E-value=2.3e-05 Score=82.04 Aligned_cols=69 Identities=19% Similarity=0.269 Sum_probs=49.7
Q ss_pred CccccceeeEEeCCcE--EEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccc-ccHHHhhhhcccccC
Q psy845 451 PLVLANVSFRINHGEN--IGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS-VELETLRSRLSVIPQ 519 (677)
Q Consensus 451 ~~VLknISl~I~~GE~--VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~-l~~~~~~~~i~~v~q 519 (677)
+.++++++..+++|+. +.+.||+|+||||+++.+++...+.+|+..+.+.+..+ ...+.+|+.+...+|
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~ 102 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFAS 102 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHh
Confidence 3589999999999988 99999999999999999999887776654443333322 123445555544443
No 263
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.18 E-value=0.00011 Score=70.25 Aligned_cols=56 Identities=23% Similarity=0.083 Sum_probs=36.5
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG 584 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg 584 (677)
+.+|.||||||||+++|+++++++.|....+.-+.. ...-.+.+.|.+|++..|..
T Consensus 5 ~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~---~~ge~~g~~~~~~~~~~~~~ 60 (186)
T 3a00_A 5 VISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP---RAGEVNGKDYNFVSVDEFKS 60 (186)
T ss_dssp EEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCC---CTTCCBTTTBEECCHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHhhCCccceEEeeccccCC---CCCccCCeeeeecCHHHHHH
Confidence 457999999999999999999877775433222211 11112456677777666643
No 264
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.18 E-value=0.00032 Score=64.99 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCC
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
-+++++|++|+|||||++.+++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999853
No 265
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.18 E-value=9.9e-05 Score=77.23 Aligned_cols=45 Identities=22% Similarity=0.230 Sum_probs=38.2
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhh-HHHHhh
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE-LETLRS 570 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~-~~~LR~ 570 (677)
+.+|.||||||||++.|.++++|++|++.++|.|..... .++++.
T Consensus 104 ~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~ 149 (302)
T 3b9q_A 104 MIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEI 149 (302)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHH
Confidence 568999999999999999999999999999999977653 344443
No 266
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.18 E-value=5.5e-05 Score=78.98 Aligned_cols=61 Identities=16% Similarity=0.113 Sum_probs=49.4
Q ss_pred EEeeeEEeCCCCCccccc-eeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccc
Q psy845 439 FKNVSLRYRDNWPLVLAN-VSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 504 (677)
Q Consensus 439 fknVsFsY~~~~~~VLkn-ISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~ 504 (677)
.+++...|++.. ++ +|++.+ |++++++|++|+||||++..|++.+.+.+|++.+.+.|...
T Consensus 77 ~~~l~~~~~~~~----~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 77 YDELSNLFGGDK----EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp HHHHHHHTTCSC----CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred HHHHHHHhcccc----ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 445555665431 45 788776 99999999999999999999999999888999998888654
No 267
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.18 E-value=0.00012 Score=71.26 Aligned_cols=22 Identities=45% Similarity=0.637 Sum_probs=20.4
Q ss_pred cccccCCCCCchhHHHHHHhhh
Q psy845 526 GIVGRTGAGKSSLLVALFRLVE 547 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~ 547 (677)
+.+|.||||||||+++|+|+++
T Consensus 8 ~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 8 VLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp EEECCTTSSHHHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHhhCc
Confidence 5689999999999999999997
No 268
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.17 E-value=9.2e-05 Score=79.04 Aligned_cols=135 Identities=13% Similarity=0.092 Sum_probs=81.9
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccC---CCCChHHHH
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPF---GRCHDTELW 602 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~---~~~sdeeI~ 602 (677)
+.+|.||||||||+++|.|+.+||.|.+.+.|++.. +.++.+++ .++. . .+..+... .....+++.
T Consensus 75 gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~-----ev~~~i~~-~~~~-~----~~~~v~~~~~~~~~~~~r~~ 143 (347)
T 2obl_A 75 GIFAGSGVGKSTLLGMICNGASADIIVLALIGERGR-----EVNEFLAL-LPQS-T----LSKCVLVVTTSDRPALERMK 143 (347)
T ss_dssp EEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHH-----HHHHHHTT-SCHH-H----HTTEEEEEECTTSCHHHHHH
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHH-----HHHHHHHh-hhhh-h----hhceEEEEECCCCCHHHHHH
Confidence 568999999999999999999999999999998743 23333333 1111 0 11111100 011123444
Q ss_pred HHHHHccchhhHhhhhcccCCCC---CCCCCChHHHHHHHHHHHHhccchhh------------------c--cccc---
Q psy845 603 DALEKSHLKSKVVTMRSKLDSDV---QGDQLSLGEKQLLCLARALLRKTKKK------------------K--KSGV--- 656 (677)
Q Consensus 603 ~Al~~a~l~efI~~LP~GldT~v---~G~~LSGGQRQRIaIARALLr~p~IL------------------~--~~~~--- 656 (677)
.+.....+.++... .|.|..+ ...+||+|| ||+++| +.+|+.- . ..|.
T Consensus 144 ~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~t~Gldp~~~~~l~~ller~~~~~~GsiT~ 217 (347)
T 2obl_A 144 AAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITA 217 (347)
T ss_dssp HHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCCBTTBCHHHHHHHHHHHTTCEECSSSEEEE
T ss_pred HHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCcccCCCHHHHHHHHHHHHHHhCCCCCCeee
Confidence 44444444444332 2333322 567899999 999999 6777742 1 1244
Q ss_pred --ce---eccc--ccccEEEEEeCCeeC
Q psy845 657 --NI---TRPV--TSCDKVLVMDNGQAL 677 (677)
Q Consensus 657 --TI---LsTI--~~aDrIlVLd~GrIV 677 (677)
|| .|.+ .-||++.+|.+|+|+
T Consensus 218 ~~tVl~~thdl~~~i~d~v~~i~dG~Iv 245 (347)
T 2obl_A 218 IYTVLLESDNVNDPIGDEVRSILDGHIV 245 (347)
T ss_dssp EEEEECCSSCCCCHHHHHHHHHCSEEEE
T ss_pred EEEEEEeCCCCCChhhhheEEeeCcEEE
Confidence 43 2222 238999999999984
No 269
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.17 E-value=9.8e-05 Score=71.42 Aligned_cols=55 Identities=15% Similarity=0.112 Sum_probs=41.9
Q ss_pred ccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc
Q psy845 523 LFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF 582 (677)
Q Consensus 523 lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF 582 (677)
-.-+.+|.||||||||+++|.+.. |.+.+|+.++.... ..-+...++++|++..+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~~-~~~~~~~g~~~~~~~~~ 84 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSPE-NIATMQRGIPLTDEDRW 84 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCHH-HHHHHHTTCCCCHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccHH-HHHHHhcCCCCCCcccc
Confidence 344677999999999999999987 89999988876432 22334678999987554
No 270
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.16 E-value=0.00016 Score=69.01 Aligned_cols=32 Identities=31% Similarity=0.339 Sum_probs=26.7
Q ss_pred ceeeEEeCCcEEEEEcCCCCChHHHHHHHhcC
Q psy845 456 NVSFRINHGENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 456 nISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
++|++.++|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999885
No 271
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.15 E-value=0.00024 Score=66.49 Aligned_cols=38 Identities=26% Similarity=0.418 Sum_probs=29.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC-----------CCCCccEEEECCEec
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRL-----------VELSSGQIKIDDFDI 502 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~-----------y~p~~G~I~IdG~dI 502 (677)
-+++++|++|+|||||++.+++- .++..|.+.++|..+
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 56 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKF 56 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEE
Confidence 37999999999999999999983 334556677776554
No 272
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.14 E-value=8.6e-05 Score=79.36 Aligned_cols=32 Identities=34% Similarity=0.624 Sum_probs=29.8
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 557 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~ 557 (677)
+.+|.||||||||+++|+|+++|++|.|.++|
T Consensus 179 ~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~ 210 (361)
T 2gza_A 179 VVAGETGSGKTTLMKALMQEIPFDQRLITIED 210 (361)
T ss_dssp EEEESSSSCHHHHHHHHHTTSCTTSCEEEEES
T ss_pred EEECCCCCCHHHHHHHHHhcCCCCceEEEECC
Confidence 56799999999999999999999999999875
No 273
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.12 E-value=0.00017 Score=75.58 Aligned_cols=39 Identities=21% Similarity=0.183 Sum_probs=35.4
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccchhhh
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV 563 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~ 563 (677)
-+.+|.||||||||++.|.++++|++|++.++|.|....
T Consensus 105 i~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~ 143 (304)
T 1rj9_A 105 VLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRA 143 (304)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSST
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCCh
Confidence 356799999999999999999999999999999997654
No 274
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.07 E-value=0.00013 Score=73.47 Aligned_cols=43 Identities=21% Similarity=0.221 Sum_probs=36.1
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccc
Q psy845 460 RINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 504 (677)
Q Consensus 460 ~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~ 504 (677)
..++|..+.++|++||||||+.+.|.+.+. .|.+.+||.++++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r~ 70 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFRS 70 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGGT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHHH
Confidence 566788999999999999999999998764 3678888877654
No 275
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.05 E-value=0.00018 Score=76.32 Aligned_cols=66 Identities=20% Similarity=0.184 Sum_probs=55.3
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhh----hHHHHhhhcc--ccccccccc-ccchhhccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV----ELETLRSRLS--VIPQDPVLF-NGTIRYNLD 591 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~----~~~~LR~~I~--~V~Qd~~LF-sgTIrENI~ 591 (677)
+.+|.||||||||+++|.++++|+.|++.++|.|.... ..+.++++++ +++|+..++ ..|++||+.
T Consensus 133 ~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 133 MFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 56899999999999999999999999999999998654 3445566666 899998887 468888884
No 276
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.01 E-value=0.00024 Score=68.56 Aligned_cols=29 Identities=28% Similarity=0.516 Sum_probs=24.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCccEEEECC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 499 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG 499 (677)
.++|+|++||||||+.+.|+++ |...+|+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~ 32 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDA 32 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccch
Confidence 6999999999999999999983 6556654
No 277
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.01 E-value=0.00013 Score=83.16 Aligned_cols=67 Identities=18% Similarity=0.229 Sum_probs=49.5
Q ss_pred ccccccCCCCCchhHHHHHHhhhh-ccccccccccchhhh---hHHHHhhhcccccccccccc-cchhhccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVEL-SSGQIKIDDFDIASV---ELETLRSRLSVIPQDPVLFN-GTIRYNLD 591 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~-~~g~i~~~~~~~~~~---~~~~LR~~I~~V~Qd~~LFs-gTIrENI~ 591 (677)
-+.+|+||||||||+++|.|+..| ++|.+.++|.++... +.+.+|+++++++|++.+++ .|++||+.
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~ 119 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEIN 119 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHH
Confidence 477899999999999999999988 899999999996432 24578999999999998874 68999985
No 278
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.00 E-value=0.0003 Score=76.62 Aligned_cols=42 Identities=26% Similarity=0.434 Sum_probs=35.3
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcC-----------CCCCccEEEECCEe
Q psy845 460 RINHGENIGIVGRTGAGKSSLLVALFRL-----------VELSSGQIKIDDFD 501 (677)
Q Consensus 460 ~I~~GE~VAIVGpSGSGKSTLi~LL~r~-----------y~p~~G~I~IdG~d 501 (677)
.++.|.+++|||++|+|||||++.|.+- .+|+.|.+.++|..
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r 70 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDER 70 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCcc
Confidence 4567899999999999999999999998 78889999887743
No 279
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.98 E-value=0.00015 Score=79.74 Aligned_cols=35 Identities=23% Similarity=0.216 Sum_probs=33.0
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccch
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 560 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 560 (677)
+.+|.||||||||+++|.|+.+|++|.+.++|++.
T Consensus 161 ~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~ 195 (438)
T 2dpy_A 161 GLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERG 195 (438)
T ss_dssp EEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCH
T ss_pred EEECCCCCCHHHHHHHHhcccCCCeEEEEEeceec
Confidence 78899999999999999999999999999999853
No 280
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.97 E-value=0.00039 Score=65.06 Aligned_cols=27 Identities=41% Similarity=0.596 Sum_probs=22.6
Q ss_pred eeEEeCCcEEEEEcCCCCChHHHHHHHh
Q psy845 458 SFRINHGENIGIVGRTGAGKSSLLVALF 485 (677)
Q Consensus 458 Sl~I~~GE~VAIVGpSGSGKSTLi~LL~ 485 (677)
+++..+| ..+|+|||||||||++.+|.
T Consensus 18 ~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 18 VVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred EEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4445555 88999999999999999987
No 281
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.97 E-value=0.00043 Score=69.15 Aligned_cols=48 Identities=23% Similarity=0.331 Sum_probs=33.1
Q ss_pred cccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccc
Q psy845 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 504 (677)
Q Consensus 453 VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~ 504 (677)
.+++++.+.++| +.|+||+|+||||+++.+++..... -+.+++.++.+
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~~~ 83 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDFVE 83 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSSTT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHHHH
Confidence 455555555555 9999999999999999999976422 47778776644
No 282
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.97 E-value=0.00016 Score=69.59 Aligned_cols=35 Identities=29% Similarity=0.319 Sum_probs=28.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEec
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 502 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI 502 (677)
...++|+|++||||||+.+.|++.+ |...+|+.++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 5689999999999999999998865 5566766554
No 283
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.96 E-value=0.00019 Score=74.72 Aligned_cols=53 Identities=23% Similarity=0.327 Sum_probs=32.2
Q ss_pred ccccCCCCCchhHHHHHH-hhhhccccccccccchhhhhHHHHhhhcccccccccc
Q psy845 527 IVGRTGAGKSSLLVALFR-LVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL 581 (677)
Q Consensus 527 ~~~~n~~~~~~~~~~~~~-~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~L 581 (677)
..|.||+|||||+++|.+ ++.|++|+++++|.+...-. .-+..+++++|++++
T Consensus 41 l~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~--~~~~~~~~~~~~~~~ 94 (354)
T 1sxj_E 41 LYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS--NRKLELNVVSSPYHL 94 (354)
T ss_dssp EECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEE
T ss_pred EECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc--cccceeeeecccceE
Confidence 358999999999999999 99999999999998865432 237889999998876
No 284
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.00016 Score=79.99 Aligned_cols=50 Identities=22% Similarity=0.119 Sum_probs=45.1
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccc-c-ccccccchhhhhHHHHhhhcccccccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSG-Q-IKIDDFDIASVELETLRSRLSVIPQDPVLFN 583 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g-~-i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs 583 (677)
-+.+|.||||||||+++|.|+++|++| + |++||. .|+.+++|||++.+|.
T Consensus 141 v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~---------~~~~i~~vpq~~~l~~ 192 (460)
T 2npi_A 141 VVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD---------PQQPIFTVPGCISATP 192 (460)
T ss_dssp EEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC---------TTSCSSSCSSCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC---------ccCCeeeeccchhhcc
Confidence 467899999999999999999999999 9 999981 4889999999998864
No 285
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.93 E-value=0.00023 Score=76.44 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=37.4
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhh-HHHHh
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE-LETLR 569 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~-~~~LR 569 (677)
+.+|.||||||||++.|.++++|++|++.++|.|..... .++++
T Consensus 161 ~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~ 205 (359)
T 2og2_A 161 MIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLE 205 (359)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHH
T ss_pred EEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHH
Confidence 568999999999999999999999999999999976553 34443
No 286
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.91 E-value=0.00022 Score=74.67 Aligned_cols=37 Identities=32% Similarity=0.440 Sum_probs=33.3
Q ss_pred cccccCCCCCchhHHHHHHhh--------hhccccccccccchhh
Q psy845 526 GIVGRTGAGKSSLLVALFRLV--------ELSSGQIKIDDFDIAS 562 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~--------~~~~g~i~~~~~~~~~ 562 (677)
..+|-||||||||++.|+++. .||.|+|.+||.+++.
T Consensus 8 ~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~ 52 (318)
T 1nij_A 8 LLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGD 52 (318)
T ss_dssp EEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECT
T ss_pred EEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhC
Confidence 456999999999999999998 8999999999998764
No 287
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.89 E-value=0.00046 Score=65.10 Aligned_cols=27 Identities=37% Similarity=0.575 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCc
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVELSS 492 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~p~~ 492 (677)
+++++|++|+|||||++.+++...+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~~ 30 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSDL 30 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCccC
Confidence 799999999999999999999754433
No 288
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.87 E-value=0.00021 Score=67.65 Aligned_cols=113 Identities=17% Similarity=0.052 Sum_probs=74.0
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHH
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDAL 605 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al 605 (677)
+.+|.||||||||+++|.+. |+.|.+.+|+.++..... -++.+++++|++. .+.|+.+|+.... + ...
T Consensus 13 ~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~~-----~--~~~ 80 (191)
T 1zp6_A 13 LLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADVA-----G--RYA 80 (191)
T ss_dssp EEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHHH-----H--HHH
T ss_pred EEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHHH-----H--HHh
Confidence 45799999999999999998 889999999888754421 1456789999876 5678888874210 0 011
Q ss_pred HHccchhhHhhhhc--ccC---C-CCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 606 EKSHLKSKVVTMRS--KLD---S-DVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 606 ~~a~l~efI~~LP~--Gld---T-~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
..+-...++.... +++ . ......+|+||+||+++||++.++|+++
T Consensus 81 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l 131 (191)
T 1zp6_A 81 -KEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL 131 (191)
T ss_dssp -HTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC
T ss_pred -ccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc
Confidence 1111111111000 000 0 1123579999999999999999998865
No 289
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.86 E-value=0.00028 Score=77.17 Aligned_cols=113 Identities=21% Similarity=0.182 Sum_probs=76.8
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhh----hHHHHhhhccc---------cccccccc--c-----cc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV----ELETLRSRLSV---------IPQDPVLF--N-----GT 585 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~----~~~~LR~~I~~---------V~Qd~~LF--s-----gT 585 (677)
+.+|.||||||||+++|+++.+|++|+|.+++.++... +..++++++++ +.|+|.+. . .|
T Consensus 171 ~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et 250 (418)
T 1p9r_A 171 LVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLET 250 (418)
T ss_dssp EEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHH
T ss_pred EEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcCCHHH
Confidence 45799999999999999999999999999988766321 12234556655 44888763 1 36
Q ss_pred hhhccccC--C--------CCChHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHHhccchhh
Q psy845 586 IRYNLDPF--G--------RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTKKK 651 (677)
Q Consensus 586 IrENI~~~--~--------~~sdeeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARALLr~p~IL 651 (677)
+++|+... + ..+..+..+.++..++.++. ...+|||||+|| ||||+..+|++.
T Consensus 251 ~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~-----------~~~~LSgg~~QR--LaraL~~~p~~~ 313 (418)
T 1p9r_A 251 AQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL-----------ISSSLLGVLAQR--LVRTLCPDCKEP 313 (418)
T ss_dssp HHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH-----------HHHHEEEEEEEE--EEEEECTTTCEE
T ss_pred HHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH-----------HHHHHHHHHHHH--hhhhhcCCCCcc
Confidence 77776421 0 01123333445555554331 345899999999 999999999865
No 290
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.84 E-value=0.00039 Score=78.07 Aligned_cols=50 Identities=18% Similarity=0.207 Sum_probs=42.6
Q ss_pred ceeeEEeCCcEEEEEcCCCCChHHHHHHHhc--CCCCCccEEEECCEecccc
Q psy845 456 NVSFRINHGENIGIVGRTGAGKSSLLVALFR--LVELSSGQIKIDDFDIASV 505 (677)
Q Consensus 456 nISl~I~~GE~VAIVGpSGSGKSTLi~LL~r--~y~p~~G~I~IdG~dI~~l 505 (677)
.+++++.+|.++.|+|+|||||||+++.|.. ++.++.|++.+.+.|.+..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~ 210 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKML 210 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSS
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchh
Confidence 4678888999999999999999999999876 6777778888888887654
No 291
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.83 E-value=0.00015 Score=72.00 Aligned_cols=57 Identities=18% Similarity=0.128 Sum_probs=44.0
Q ss_pred ccccccccCCCCCchhHHHHHHhhhhccccccccccchhhh------hHHH----Hhhhcccccccccccc
Q psy845 523 LFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV------ELET----LRSRLSVIPQDPVLFN 583 (677)
Q Consensus 523 lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~------~~~~----LR~~I~~V~Qd~~LFs 583 (677)
.+-+..|.||||||||+++|.++ .|++.+++++.... ...+ .++.+++++|++.++.
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 34466799999999999999998 78899999886532 2221 2578999999987764
No 292
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.79 E-value=0.00044 Score=67.79 Aligned_cols=64 Identities=14% Similarity=0.055 Sum_probs=46.8
Q ss_pred cccccCCCCCchhHHHHH--HhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhcc
Q psy845 526 GIVGRTGAGKSSLLVALF--RLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNL 590 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~--~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI 590 (677)
+.+|.||||||||+++|+ ++.++++|.+++++.+... .....++++++++|+...+ ..++.++.
T Consensus 34 ~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 100 (251)
T 2ehv_A 34 LLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMASFGWDFEKYEKEGKIAIVDGV 100 (251)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHHTTTCCHHHHHHTTSEEEEC--
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHHHcCCChHHHhhcCCEEEEEcc
Confidence 567999999999999999 7768888888888877543 3334557899999987554 23455544
No 293
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.79 E-value=0.00018 Score=76.38 Aligned_cols=31 Identities=29% Similarity=0.372 Sum_probs=27.5
Q ss_pred cccccCCCCCchhHHHHHHhhhhcc----cccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSS----GQIKID 556 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~----g~i~~~ 556 (677)
+.+|.||||||||+++|.|+++|++ |+++++
T Consensus 174 ~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~ 208 (365)
T 1lw7_A 174 AILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVF 208 (365)
T ss_dssp EEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHH
Confidence 6789999999999999999999999 765553
No 294
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.75 E-value=0.0012 Score=62.55 Aligned_cols=37 Identities=30% Similarity=0.481 Sum_probs=29.2
Q ss_pred EEEEEcCCCCChHHHHHHHh-cC----CCCCcc----EEEECCEec
Q psy845 466 NIGIVGRTGAGKSSLLVALF-RL----VELSSG----QIKIDDFDI 502 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~-r~----y~p~~G----~I~IdG~dI 502 (677)
+++++|++|+|||||++.++ +- +.|+.| .+.++|..+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 67 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSY 67 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEE
Confidence 79999999999999996554 43 677777 677777554
No 295
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.75 E-value=0.00039 Score=73.67 Aligned_cols=61 Identities=25% Similarity=0.293 Sum_probs=53.2
Q ss_pred ccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhH----HHHhhhcccccccccccc
Q psy845 523 LFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL----ETLRSRLSVIPQDPVLFN 583 (677)
Q Consensus 523 lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~----~~LR~~I~~V~Qd~~LFs 583 (677)
-+-+.+|.||||||||+++|.|+..|++|++.+.+.|...... ...|+++++++|++.+|.
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 120 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFI 120 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCccccc
Confidence 3457789999999999999999999999999999999876542 356889999999999985
No 296
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.74 E-value=0.00048 Score=66.50 Aligned_cols=38 Identities=26% Similarity=0.338 Sum_probs=30.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCCCCC---ccEEEECCEe
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLVELS---SGQIKIDDFD 501 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y~p~---~G~I~IdG~d 501 (677)
-..++|+|+|||||||+++.|.+...+. -|.|..++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 3589999999999999999999876543 3777877654
No 297
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.73 E-value=0.00021 Score=84.08 Aligned_cols=62 Identities=18% Similarity=0.132 Sum_probs=46.2
Q ss_pred eeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEecccccHHHhhhhcccccCCc
Q psy845 458 SFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP 521 (677)
Q Consensus 458 Sl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~l~~~~~~~~i~~v~q~~ 521 (677)
++.+++|+.+.|+||+||||||+++++++..++. -+.++|.++......+..++++.++|++
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~--~i~v~~~~l~~~~~g~~~~~l~~vf~~a 293 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKLAGESESNLRKAFEEA 293 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE--EEEEEHHHHSSSSTTHHHHHHHHHHHHH
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc--EEEEEchHhhhhhhhhHHHHHHHHHHHH
Confidence 3478999999999999999999999999987543 4778877765543344445555555553
No 298
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.70 E-value=0.00054 Score=73.22 Aligned_cols=36 Identities=25% Similarity=0.253 Sum_probs=31.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEEC
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKID 498 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~Id 498 (677)
.+..++|+|||||||||+++.++..+.+.++.|.+-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 577899999999999999999998877888888774
No 299
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.69 E-value=0.00045 Score=66.55 Aligned_cols=93 Identities=15% Similarity=0.068 Sum_probs=64.9
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHHH
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDAL 605 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~Al 605 (677)
+.+|.||||||||+++|.|+++ +.++|.+..+......++++++++|++ +..+|+. ....
T Consensus 4 ~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~--~~~~-------- 63 (178)
T 1ye8_A 4 IITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF--SSKF-------- 63 (178)
T ss_dssp EEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEE--EETT--------
T ss_pred EEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH--Hhhc--------
Confidence 4579999999999999999995 778887765443335688999999997 4455652 1100
Q ss_pred HHccchhhHhhhhcccCCCC--CCCCCChHHHHHHHHHHH-----Hhccchhh
Q psy845 606 EKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARA-----LLRKTKKK 651 (677)
Q Consensus 606 ~~a~l~efI~~LP~GldT~v--~G~~LSGGQRQRIaIARA-----LLr~p~IL 651 (677)
+ ++ +..+ .+.+||||||||++|||| ++++|+++
T Consensus 64 -------~----~~--~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~ll 103 (178)
T 1ye8_A 64 -------F----TS--KKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVI 103 (178)
T ss_dssp -------C----CC--SSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred -------C----Cc--cccccccccCcCHHHHHHHHHHhhccccccccCCCEE
Confidence 0 00 0112 467899999999999996 99999877
No 300
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.69 E-value=0.00039 Score=67.33 Aligned_cols=65 Identities=23% Similarity=0.237 Sum_probs=48.5
Q ss_pred cccccCCCCCchhHHHHHHhhhh-------ccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCC
Q psy845 526 GIVGRTGAGKSSLLVALFRLVEL-------SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRC 596 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~-------~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~ 596 (677)
+.+|.||||||||+++|.++..+ +.|.+++++++... ++++++++|+..++..|+.||+.+....
T Consensus 29 ~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 100 (231)
T 4a74_A 29 EVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR------PERIREIAQNRGLDPDEVLKHIYVARAF 100 (231)
T ss_dssp EEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC------HHHHHHHHHHTTSCHHHHHHTEEEEECC
T ss_pred EEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC------HHHHHHHHHHcCCCHHHHhhcEEEEecC
Confidence 56799999999999999997665 34478888776311 2456777788777777999999764433
No 301
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.69 E-value=0.00066 Score=64.61 Aligned_cols=33 Identities=33% Similarity=0.342 Sum_probs=27.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEe
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 501 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~d 501 (677)
..+|+|+|++||||||+.+.|++. |-..+|..+
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~ 40 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDA 40 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccH
Confidence 457999999999999999999995 666666544
No 302
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.69 E-value=0.00063 Score=65.30 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
+++|+|++||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
No 303
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.66 E-value=0.00049 Score=76.95 Aligned_cols=66 Identities=23% Similarity=0.250 Sum_probs=55.1
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhh----hHHH--Hhhhccccccccccc-ccchhhccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV----ELET--LRSRLSVIPQDPVLF-NGTIRYNLD 591 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~----~~~~--LR~~I~~V~Qd~~LF-sgTIrENI~ 591 (677)
+.+|.||||||||++.|.|+++++.|+|.++|.|.... .+.. .|+++++++|++.++ ..|+++|+.
T Consensus 297 ~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~ 369 (503)
T 2yhs_A 297 LMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQ 369 (503)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHH
T ss_pred EEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHH
Confidence 57899999999999999999999999999988886543 1233 478899999998765 568899885
No 304
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.65 E-value=0.00074 Score=63.61 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=23.0
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcC
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
.+|..++++|++||||||+.+.|+.-
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999853
No 305
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.63 E-value=0.00041 Score=77.75 Aligned_cols=113 Identities=14% Similarity=0.124 Sum_probs=71.4
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc--cchhhccc------c----C
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN--GTIRYNLD------P----F 593 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs--gTIrENI~------~----~ 593 (677)
+.+|.||||||||+++|+++.+|++|.+.++|.+--..+. ++.++++.|+.. .. .|.++++. | .
T Consensus 264 ~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~-~~~~~~~~~~l~~~LR~~PD~iiv 339 (511)
T 2oap_1 264 IVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGM-GEGEIDMYDLLRAALRQRPDYIIV 339 (511)
T ss_dssp EEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCS-SSCCBCHHHHHHTTGGGCCSEEEE
T ss_pred EEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeeccc-ccCCcCHHHHHHHhhccCCCeEEe
Confidence 6679999999999999999999999999999987222221 345666666654 22 24555442 1 1
Q ss_pred CCCChHHHHHHHHHccc-------------hhhHhhhh---cccC--------CCC-CCCCCChHHHHHHHHHH
Q psy845 594 GRCHDTELWDALEKSHL-------------KSKVVTMR---SKLD--------SDV-QGDQLSLGEKQLLCLAR 642 (677)
Q Consensus 594 ~~~sdeeI~~Al~~a~l-------------~efI~~LP---~Gld--------T~v-~G~~LSGGQRQRIaIAR 642 (677)
++..++|...+++.++. .+.+.++. .|.. ..+ ....+|||||||.++|.
T Consensus 340 gEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~~R~~~ai 413 (511)
T 2oap_1 340 GEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTRLRRTKEV 413 (511)
T ss_dssp SCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCEEEEEEEE
T ss_pred CCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCceEEEEEE
Confidence 45666777666665431 12233322 2222 111 34468999999988763
No 306
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.62 E-value=0.00045 Score=71.97 Aligned_cols=105 Identities=14% Similarity=0.098 Sum_probs=73.0
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccc---cccchhhhhHHHHh-hhcccccccccc------cccchhhcc--ccC
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKI---DDFDIASVELETLR-SRLSVIPQDPVL------FNGTIRYNL--DPF 593 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~---~~~~~~~~~~~~LR-~~I~~V~Qd~~L------FsgTIrENI--~~~ 593 (677)
+.+|.||||||||+++|. +.+|++|+|.. +|.+.+..+. ..+ +.+|+|+|+|-+ .+.|+ ||+ .+.
T Consensus 169 ~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~l~~~f~ 245 (302)
T 2yv5_A 169 ILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP-REVRNYFR 245 (302)
T ss_dssp EEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG-GGGGGGCG
T ss_pred EEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH-HHHHHHHH
Confidence 678999999999999999 99999999999 8888765432 222 379999999955 35678 887 221
Q ss_pred ---------CC-----CChHHHHHHHHHccchh-hHhhhhcccCCCCCCCCCChHHHHHHHHHH
Q psy845 594 ---------GR-----CHDTELWDALEKSHLKS-KVVTMRSKLDSDVQGDQLSLGEKQLLCLAR 642 (677)
Q Consensus 594 ---------~~-----~sdeeI~~Al~~a~l~e-fI~~LP~GldT~v~G~~LSGGQRQRIaIAR 642 (677)
.. ..++.+.++++..++.+ ...+. ...|||.+++++.|||
T Consensus 246 ~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~---------~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 246 EFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSY---------LKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHH---------HHHTTCCCTTHHHHSS
T ss_pred HHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHH---------HHHHHHHHHHHHHHhc
Confidence 11 12356888899988875 44433 2468888888899987
No 307
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.62 E-value=0.00056 Score=67.41 Aligned_cols=61 Identities=15% Similarity=0.182 Sum_probs=37.7
Q ss_pred ccccccCCCCCchhHHHHH-Hhh------------hhccccccccccchhhhhHHHHhhhcccccccccccccchhhcc
Q psy845 525 NGIVGRTGAGKSSLLVALF-RLV------------ELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNL 590 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~-~~~------------~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI 590 (677)
-+.+|.||||||||+++|. +++ +|++|++ +|.++...+.+..++. ..++.+++.+++.+|+
T Consensus 30 i~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 103 (231)
T 3lnc_A 30 LVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EGKDYYFVDREEFLRL---CSNGEIIEHAEVFGNF 103 (231)
T ss_dssp EEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BTTTBEECCHHHHHHH---HHTTCEEEEEEETTEE
T ss_pred EEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CCCeEEEecHHHhhhh---hhcCceehhhhhcccc
Confidence 3678999999999999999 999 7888875 6666655555555443 3456666666666665
No 308
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.61 E-value=0.00096 Score=62.39 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCCC
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLVE 489 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y~ 489 (677)
|..+.++|++||||||+.+.|+.-++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 67899999999999999999998653
No 309
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.60 E-value=0.00038 Score=67.26 Aligned_cols=35 Identities=29% Similarity=0.502 Sum_probs=30.4
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccc--cccccchh
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQI--KIDDFDIA 561 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i--~~~~~~~~ 561 (677)
..+|.||||||||+++|.+... +.|.+ ++|+.++.
T Consensus 29 ~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 29 WVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp EEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 4579999999999999999998 88998 89876654
No 310
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.58 E-value=0.00059 Score=71.05 Aligned_cols=64 Identities=14% Similarity=0.180 Sum_probs=51.6
Q ss_pred ccccccccCCCCCchhHHHHHHhhh--hccccccc---cccchhhhhHHHHhhhccccccccccc-ccchhhccc
Q psy845 523 LFNGIVGRTGAGKSSLLVALFRLVE--LSSGQIKI---DDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLD 591 (677)
Q Consensus 523 lf~~~~~~n~~~~~~~~~~~~~~~~--~~~g~i~~---~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~ 591 (677)
..-|.+|.||||||||+++|.++.+ |++|++.+ ||.+.. ...|+.++++ |+.-++ ..|+.+|+.
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~~ 150 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLVK 150 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHHH
Confidence 3457789999999999999999999 99999999 988753 2346789999 766554 557888874
No 311
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.56 E-value=0.0011 Score=62.36 Aligned_cols=39 Identities=26% Similarity=0.428 Sum_probs=29.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC----CCCCcc----EEEECCEec
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRL----VELSSG----QIKIDDFDI 502 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~----y~p~~G----~I~IdG~dI 502 (677)
.=+++++|++|+|||||++.+.+- +.|+.| ++.+++..+
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l 62 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKL 62 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEE
Confidence 348999999999999999999976 355666 455554443
No 312
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.56 E-value=0.00016 Score=68.99 Aligned_cols=37 Identities=30% Similarity=0.383 Sum_probs=31.8
Q ss_pred ccccccCCCCCchhHHHHHHhhhh-----------ccccccccccchh
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVEL-----------SSGQIKIDDFDIA 561 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~-----------~~g~i~~~~~~~~ 561 (677)
-+.+|+||||||||++++.+...+ ++|++.++|.++.
T Consensus 32 v~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~ 79 (191)
T 1oix_A 32 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 79 (191)
T ss_dssp EEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEE
T ss_pred EEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEE
Confidence 367899999999999999998765 6889999987764
No 313
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.55 E-value=0.00056 Score=73.46 Aligned_cols=33 Identities=24% Similarity=0.355 Sum_probs=28.9
Q ss_pred ccccccCCCCCchhHHHHHHhhhhc-cccccccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELS-SGQIKIDD 557 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~-~g~i~~~~ 557 (677)
-+.+|.||||||||+++|+|+++|+ +|+|.+.+
T Consensus 139 i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e 172 (372)
T 2ewv_A 139 ILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 172 (372)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEec
Confidence 3567999999999999999999998 89886644
No 314
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.51 E-value=0.0011 Score=61.22 Aligned_cols=23 Identities=22% Similarity=0.096 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
.++|.|++||||||+.+.|...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 315
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.51 E-value=0.0003 Score=67.76 Aligned_cols=30 Identities=30% Similarity=0.378 Sum_probs=25.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCccEE
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVELSSGQI 495 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I 495 (677)
.++|+|++||||||+++.|.+.+++...++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v 31 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV 31 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 689999999999999999999886544444
No 316
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.51 E-value=0.00065 Score=67.73 Aligned_cols=78 Identities=18% Similarity=0.132 Sum_probs=59.6
Q ss_pred cccccCCCCCchhHHHHHHhhhh--ccccccccccchhhhhHHHHhhhccccccccccccc-ch----hhccccCCC---
Q psy845 526 GIVGRTGAGKSSLLVALFRLVEL--SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TI----RYNLDPFGR--- 595 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~--~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TI----rENI~~~~~--- 595 (677)
+.+|.||||||||+++|+++.+| .+|.+.+.+.+... ..++.++|++|++.+|.. +. .||+.+++.
T Consensus 20 ~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~yg 95 (219)
T 1s96_A 20 IVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYG 95 (219)
T ss_dssp EEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred EEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHHHHHHhccCC
Confidence 56799999999999999999996 78999888765432 346789999999999965 55 688865442
Q ss_pred CChHHHHHHHHH
Q psy845 596 CHDTELWDALEK 607 (677)
Q Consensus 596 ~sdeeI~~Al~~ 607 (677)
.+.+++.++++.
T Consensus 96 ~~~~~v~~~l~~ 107 (219)
T 1s96_A 96 TSREAIEQVLAT 107 (219)
T ss_dssp EEHHHHHHHHTT
T ss_pred CCHHHHHHHHhc
Confidence 234566666654
No 317
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.48 E-value=0.0015 Score=64.60 Aligned_cols=28 Identities=39% Similarity=0.512 Sum_probs=24.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCcc
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVELSSG 493 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~p~~G 493 (677)
+|+++|++|+|||||++.|+|-..+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 7999999999999999999997666555
No 318
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.47 E-value=0.00046 Score=74.18 Aligned_cols=37 Identities=30% Similarity=0.453 Sum_probs=34.1
Q ss_pred ccccceeeEEeCCcE--EEEEcCCCCChHHHHHHHhcCC
Q psy845 452 LVLANVSFRINHGEN--IGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 452 ~VLknISl~I~~GE~--VAIVGpSGSGKSTLi~LL~r~y 488 (677)
.+++++++.+++|++ ++|+|++||||||+.++|++..
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478999999999999 9999999999999999999864
No 319
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.47 E-value=0.0013 Score=62.08 Aligned_cols=26 Identities=38% Similarity=0.479 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
++..+.++|++||||||+.+.|+.-+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 47789999999999999999998644
No 320
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.45 E-value=0.00085 Score=69.68 Aligned_cols=25 Identities=44% Similarity=0.507 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcC
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
++.++||||++|+|||||++.|+|.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3448999999999999999999986
No 321
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.43 E-value=0.0015 Score=61.23 Aligned_cols=26 Identities=12% Similarity=0.207 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+|..+.|.|++||||||+.+.|..-+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998754
No 322
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.37 E-value=0.0018 Score=61.81 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=24.9
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
++|..++|.|++||||||+.+.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999999877
No 323
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.34 E-value=0.0016 Score=64.49 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=23.7
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhcC
Q psy845 461 INHGENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 461 I~~GE~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
-++|++++|+|++||||||+.+.|++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999999863
No 324
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.34 E-value=0.0017 Score=59.34 Aligned_cols=19 Identities=42% Similarity=0.496 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChHHHHHHH
Q psy845 466 NIGIVGRTGAGKSSLLVAL 484 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL 484 (677)
.++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 325
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.34 E-value=0.00042 Score=74.12 Aligned_cols=28 Identities=39% Similarity=0.453 Sum_probs=25.0
Q ss_pred cccccccCCCCCchhHHHHHHhhhhccc
Q psy845 524 FNGIVGRTGAGKSSLLVALFRLVELSSG 551 (677)
Q Consensus 524 f~~~~~~n~~~~~~~~~~~~~~~~~~~g 551 (677)
+++.+|+||||||||+++|.++..+.++
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~l~~~~~~ 89 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGLLLGGRAN 89 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHHHTTCCCC
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 7788999999999999999999987644
No 326
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.33 E-value=0.001 Score=64.58 Aligned_cols=62 Identities=15% Similarity=0.078 Sum_probs=44.0
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccc-cchhhccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLD 591 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~ 591 (677)
+.+|.||||||||+++|.|+.+ ++.+++......+....|+.++|++|++.+|. .|+++|+.
T Consensus 24 ~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~ 86 (207)
T 1znw_A 24 VLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELL 86 (207)
T ss_dssp EEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred EEECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCce
Confidence 5689999999999999999996 34444322111111234788999999998884 46777763
No 327
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.32 E-value=0.002 Score=63.11 Aligned_cols=27 Identities=41% Similarity=0.596 Sum_probs=22.2
Q ss_pred eeEEeCCcEEEEEcCCCCChHHHHHHHh
Q psy845 458 SFRINHGENIGIVGRTGAGKSSLLVALF 485 (677)
Q Consensus 458 Sl~I~~GE~VAIVGpSGSGKSTLi~LL~ 485 (677)
+++..+| ..+|+|||||||||++.+|.
T Consensus 18 ~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 18 VVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred EEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 4445554 89999999999999999875
No 328
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.30 E-value=0.00087 Score=63.66 Aligned_cols=57 Identities=19% Similarity=0.008 Sum_probs=42.2
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLD 591 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~ 591 (677)
+.+|.||||||||+++|.+ +++|++.+|+.++... ...++++|+...+ ..++++|+.
T Consensus 6 ~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~ 63 (189)
T 2bdt_A 6 IITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNIT 63 (189)
T ss_dssp EEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHH
Confidence 3579999999999999976 7889999988765432 2467888876443 457777763
No 329
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.29 E-value=0.0048 Score=56.69 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.3
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhc
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r 486 (677)
++.-+|+++|++|+|||||++.+.+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3466899999999999999999986
No 330
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.29 E-value=0.00052 Score=65.54 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=23.2
Q ss_pred cccccCCCCCchhHHHHHHhhhhccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSG 551 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g 551 (677)
+.+|.||||||||+++|.++.+|+.|
T Consensus 10 ~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 10 VLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp EEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred EEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 56799999999999999999977766
No 331
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.29 E-value=0.0026 Score=68.46 Aligned_cols=37 Identities=38% Similarity=0.554 Sum_probs=32.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhc-----------CCCCCccEEEECCE
Q psy845 464 GENIGIVGRTGAGKSSLLVALFR-----------LVELSSGQIKIDDF 500 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r-----------~y~p~~G~I~IdG~ 500 (677)
|.+++|||++|+|||||++.|.+ -.+|+.|.+.++|.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~ 49 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDP 49 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCc
Confidence 56899999999999999999998 45788898888763
No 332
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.26 E-value=0.0022 Score=62.35 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhc
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r 486 (677)
++-.++|+|++||||||+.+.|.+
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999998
No 333
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.25 E-value=0.0018 Score=61.13 Aligned_cols=27 Identities=26% Similarity=0.265 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
++|..+.++|++||||||+.+.|..-+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998744
No 334
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.23 E-value=0.0006 Score=68.77 Aligned_cols=29 Identities=41% Similarity=0.480 Sum_probs=26.4
Q ss_pred cccccCCCCCchhHHHHH---Hhhhhcccccc
Q psy845 526 GIVGRTGAGKSSLLVALF---RLVELSSGQIK 554 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~---~~~~~~~g~i~ 554 (677)
+.+|.|||||||++++|. |++.||+|+++
T Consensus 31 ~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 31 TVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp EEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 567899999999999999 99999999765
No 335
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.18 E-value=0.0015 Score=61.42 Aligned_cols=27 Identities=30% Similarity=0.242 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
.++..+.|+|++||||||+.+.|+.-+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999998543
No 336
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.17 E-value=0.0026 Score=60.90 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
++++||++|+|||||++.+.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 8999999999999999999753
No 337
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.16 E-value=0.0043 Score=56.93 Aligned_cols=22 Identities=32% Similarity=0.593 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7999999999999999999865
No 338
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.16 E-value=0.0021 Score=60.73 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=24.0
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
++|..++|+|++||||||+.+.|+.-+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998644
No 339
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.16 E-value=0.0025 Score=65.86 Aligned_cols=38 Identities=29% Similarity=0.392 Sum_probs=30.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEec
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 502 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI 502 (677)
+|..+.++|||||||||+.+.|+.-++ .|.+.+++-.+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~D~~ 69 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDNDTF 69 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECTHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEechHh
Confidence 467899999999999999999987542 46778876333
No 340
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.12 E-value=0.00099 Score=63.57 Aligned_cols=35 Identities=34% Similarity=0.548 Sum_probs=28.9
Q ss_pred cccccCCCCCchhHHHHHHhh-----------hhccccccccccch
Q psy845 526 GIVGRTGAGKSSLLVALFRLV-----------ELSSGQIKIDDFDI 560 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~-----------~~~~g~i~~~~~~~ 560 (677)
+.+|+||||||||+++|.+.. +++.|++.++|.++
T Consensus 9 ~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 54 (199)
T 2f9l_A 9 VLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 54 (199)
T ss_dssp EEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred EEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence 568999999999999999983 33567888988765
No 341
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.12 E-value=0.0044 Score=55.84 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+++++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998753
No 342
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.12 E-value=0.0026 Score=61.58 Aligned_cols=43 Identities=26% Similarity=0.227 Sum_probs=35.3
Q ss_pred ccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhH
Q psy845 523 LFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL 565 (677)
Q Consensus 523 lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~ 565 (677)
..-+.+|.||||||||+++|.++.++..|++.+.|.|....+.
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~ 65 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVER 65 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCH
Confidence 3446789999999999999999999999998887777655443
No 343
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.11 E-value=0.00064 Score=67.76 Aligned_cols=63 Identities=19% Similarity=0.259 Sum_probs=49.2
Q ss_pred ccccccCCCCCchhHHHHH---HhhhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccc
Q psy845 525 NGIVGRTGAGKSSLLVALF---RLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLD 591 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~---~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~ 591 (677)
-+.+|.||||||||+++|. |+..|+.|++..++.+.. ..++..++.++|++.++ +.++.+|+.
T Consensus 30 i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~ 96 (246)
T 2bbw_A 30 AVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMM 96 (246)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3567999999999999999 999999999998876532 23456677778877665 457888874
No 344
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.11 E-value=0.0026 Score=60.94 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=24.1
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
++|..++|.|++||||||+.+.|..-+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998643
No 345
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.10 E-value=0.004 Score=56.51 Aligned_cols=21 Identities=33% Similarity=0.710 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
+++++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 799999999999999999987
No 346
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.08 E-value=0.0028 Score=60.80 Aligned_cols=28 Identities=29% Similarity=0.285 Sum_probs=24.3
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 461 INHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 461 I~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
.++|..++|.|++||||||+.+.|..-+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999999998643
No 347
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.07 E-value=0.0029 Score=60.35 Aligned_cols=28 Identities=39% Similarity=0.458 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCCCC
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLVEL 490 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y~p 490 (677)
+|..|+|.|++||||||+.+.|..-+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4778999999999999999999986654
No 348
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.06 E-value=0.0016 Score=62.18 Aligned_cols=62 Identities=23% Similarity=0.188 Sum_probs=50.5
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc-chhhcc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIRYNL 590 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg-TIrENI 590 (677)
-+.+|.||||||||+++|.++++ .+.+++.+....+....++.++|++|++.+|.. +..+|+
T Consensus 10 i~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 10 FIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred EEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 35689999999999999999974 677888777776666668899999999998854 556665
No 349
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.97 E-value=0.0042 Score=65.66 Aligned_cols=34 Identities=29% Similarity=0.431 Sum_probs=30.4
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhc
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r 486 (677)
.++++..+.+ .|+-++|.|+||+||||++..|.+
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 4678877777 799999999999999999999987
No 350
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.96 E-value=0.0028 Score=59.52 Aligned_cols=23 Identities=43% Similarity=0.551 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
++.|+|++||||||+.+.|++-+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 69999999999999999998754
No 351
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.96 E-value=0.0059 Score=63.84 Aligned_cols=41 Identities=27% Similarity=0.212 Sum_probs=31.4
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcCC-CC------CccEEEECCE
Q psy845 460 RINHGENIGIVGRTGAGKSSLLVALFRLV-EL------SSGQIKIDDF 500 (677)
Q Consensus 460 ~I~~GE~VAIVGpSGSGKSTLi~LL~r~y-~p------~~G~I~IdG~ 500 (677)
-+++|+.+.|.||+||||||++..++.-. .| ..+.++++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e 150 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTE 150 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 58999999999999999999998887643 33 2345666554
No 352
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.93 E-value=0.0025 Score=60.33 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=24.6
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 461 INHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 461 I~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
.+++..|+|+|++||||||+.+.|...+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567899999999999999999998754
No 353
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.93 E-value=0.0066 Score=57.00 Aligned_cols=21 Identities=33% Similarity=0.711 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
+++++|++|+|||||++.+.+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 799999999999999999987
No 354
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.92 E-value=0.0034 Score=56.88 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7999999999999999999863
No 355
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.92 E-value=0.0034 Score=58.28 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=24.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCCCCCccEEEEC
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRLVELSSGQIKID 498 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~Id 498 (677)
..+.++|++||||||+.+.|... ..|-..++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~---~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK---NPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---STTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhh---cCCcEEec
Confidence 46899999999999999999971 22555555
No 356
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.92 E-value=0.0033 Score=61.43 Aligned_cols=22 Identities=50% Similarity=0.667 Sum_probs=19.3
Q ss_pred EEEEcCCCCChHHHHHHHhcCC
Q psy845 467 IGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 467 VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+.|+||||||||||++.|+.-+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999987543
No 357
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.92 E-value=0.0034 Score=57.05 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+++++|++|+|||||++.+.+-.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 79999999999999999998754
No 358
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.91 E-value=0.0018 Score=71.19 Aligned_cols=42 Identities=19% Similarity=0.142 Sum_probs=36.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEeccc
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 504 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI~~ 504 (677)
++..++++||+||||||++..|++.+.+.+++|.+-+.|...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r 137 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR 137 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 578999999999999999999999999988899886666543
No 359
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.90 E-value=0.0038 Score=58.58 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
++..|+|.|++||||||+.+.|+.-+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999997643
No 360
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.88 E-value=0.0026 Score=61.75 Aligned_cols=107 Identities=12% Similarity=0.164 Sum_probs=72.7
Q ss_pred ccccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHH
Q psy845 523 LFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELW 602 (677)
Q Consensus 523 lf~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~ 602 (677)
-.-+.+|.||||||||+++|.++++|+ | ...++|+||.+.++.+..+|+..... ..+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~---~~~~ 80 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPR---KGAP 80 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGG---TTSG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhccccc---CCCC
Confidence 345678999999999999999999986 4 24667777777777777666531110 0001
Q ss_pred HHHHHccchhhHhhhhcc--cCCCC--CCCCCChHHHHHHHHH-HHHhccchhh
Q psy845 603 DALEKSHLKSKVVTMRSK--LDSDV--QGDQLSLGEKQLLCLA-RALLRKTKKK 651 (677)
Q Consensus 603 ~Al~~a~l~efI~~LP~G--ldT~v--~G~~LSGGQRQRIaIA-RALLr~p~IL 651 (677)
.+.+...+.+++..++.| +++.+ +|.++|+||+||+++| |+++.+++.+
T Consensus 81 ~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~ 134 (208)
T 3c8u_A 81 ETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYL 134 (208)
T ss_dssp GGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESST
T ss_pred chhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCcee
Confidence 112222334556666666 44444 7889999999999998 9888777654
No 361
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.88 E-value=0.0037 Score=56.31 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
+++++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 799999999999999999875
No 362
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.87 E-value=0.0033 Score=63.55 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
.++|+||+||||||+.+.|++-+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998743
No 363
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.85 E-value=0.0043 Score=56.75 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+++++|++|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 79999999999999999998754
No 364
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.82 E-value=0.0037 Score=56.09 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999764
No 365
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.82 E-value=0.0018 Score=67.26 Aligned_cols=104 Identities=14% Similarity=0.039 Sum_probs=48.4
Q ss_pred cccccCCCCCchhHHHHHHh-hhhccccccccccchhhhhHHHHhhhccccccccccc-ccchhhccccCCCCChHH-HH
Q psy845 526 GIVGRTGAGKSSLLVALFRL-VELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFGRCHDTE-LW 602 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~-~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~~~~~sdee-I~ 602 (677)
+.+|+||||||||+++|++. ..|++| +.++|.++... . . ++.+++++|++.++ ..|+.||..++.....++ ..
T Consensus 22 ~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t-~-~-~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~ 97 (301)
T 2qnr_A 22 MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERT-V-Q-IEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 97 (301)
T ss_dssp EEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEEEEEEEC-----------CT
T ss_pred EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCc-c-e-EeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHH
Confidence 67899999999999999998 899999 88888877542 1 1 46789999987654 678999986532221111 11
Q ss_pred HHHHHccchhhHhhhhcccCCCCCCCCCChHHHHHHHHHHHH
Q psy845 603 DALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARAL 644 (677)
Q Consensus 603 ~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQRQRIaIARAL 644 (677)
+..+ ++.. ..+. .-.++|||||||+++|||+
T Consensus 98 ~l~~------~l~~---~~~~--~~~~~sgg~rqrv~~ara~ 128 (301)
T 2qnr_A 98 TIIS------YIDE---QFER--YLHDESGLNRRHIIDNRVH 128 (301)
T ss_dssp THHH------HHHH---HHHH--HHHHHTSSCCTTCCCCCCC
T ss_pred HHHH------HHHH---HHHH--HHHHhCHHhhhhhhhhhhh
Confidence 1111 1111 1111 1247899999999999975
No 366
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.81 E-value=0.009 Score=55.63 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=22.1
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcC
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
++.=+++++|++|+|||||++.+.+-
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34558999999999999999999863
No 367
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.80 E-value=0.00085 Score=70.59 Aligned_cols=87 Identities=22% Similarity=0.240 Sum_probs=48.9
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccc---cccchhhhhHHHHhhhcccccccccccc-----cchhhccc-cCC-
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKI---DDFDIASVELETLRSRLSVIPQDPVLFN-----GTIRYNLD-PFG- 594 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~---~~~~~~~~~~~~LR~~I~~V~Qd~~LFs-----gTIrENI~-~~~- 594 (677)
.+.+|.||||||||+++|.|+.+|+.|+|.. +|.+.+... +..+..+++++|.|-+.. .|+ ||+. .+.
T Consensus 176 ~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e~l~~~f~~ 253 (307)
T 1t9h_A 176 TVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-EELGYTFPD 253 (307)
T ss_dssp EEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-HHHGGGSHH
T ss_pred EEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-HHHHHHHHH
Confidence 3778999999999999999999999999998 777765432 112223899999997764 467 8883 111
Q ss_pred ----------------CCChHHHHHHHHHccchhh
Q psy845 595 ----------------RCHDTELWDALEKSHLKSK 613 (677)
Q Consensus 595 ----------------~~sdeeI~~Al~~a~l~ef 613 (677)
+..+..+.++++..++.+.
T Consensus 254 ~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~ 288 (307)
T 1t9h_A 254 IREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQY 288 (307)
T ss_dssp HHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHH
T ss_pred HHHHhhhccccCCCCccCHHHHHHHHHHhCCChHH
Confidence 1123457888888888653
No 368
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.80 E-value=0.0063 Score=64.83 Aligned_cols=30 Identities=37% Similarity=0.743 Sum_probs=25.1
Q ss_pred cceeeEEeCCcEEEEEcCCCCChHHHHHHHh
Q psy845 455 ANVSFRINHGENIGIVGRTGAGKSSLLVALF 485 (677)
Q Consensus 455 knISl~I~~GE~VAIVGpSGSGKSTLi~LL~ 485 (677)
++..++..+| ...|+|||||||||++.+|.
T Consensus 17 ~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 17 VNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 5556666665 89999999999999999986
No 369
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.80 E-value=0.0041 Score=56.05 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7999999999999999999753
No 370
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.80 E-value=0.0045 Score=56.36 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999764
No 371
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.78 E-value=0.0037 Score=58.46 Aligned_cols=27 Identities=26% Similarity=0.231 Sum_probs=18.6
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
.++..+.|.|++||||||+.+.|..-+
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 357789999999999999999998544
No 372
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.77 E-value=0.0043 Score=58.10 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVE 489 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~ 489 (677)
.+.|.|++||||||+.+.|..-+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988654
No 373
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.76 E-value=0.0034 Score=58.63 Aligned_cols=36 Identities=33% Similarity=0.378 Sum_probs=29.4
Q ss_pred ccccCCCCCchhHHHHHHhhhhccc--cccccccchhhh
Q psy845 527 IVGRTGAGKSSLLVALFRLVELSSG--QIKIDDFDIASV 563 (677)
Q Consensus 527 ~~~~n~~~~~~~~~~~~~~~~~~~g--~i~~~~~~~~~~ 563 (677)
.+|.||||||||++++.+.+++ +| .+++++.+....
T Consensus 41 l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~ 78 (149)
T 2kjq_A 41 VWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT 78 (149)
T ss_dssp EESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC
T ss_pred EECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH
Confidence 4689999999999999999987 57 777777665443
No 374
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.75 E-value=0.0043 Score=58.18 Aligned_cols=25 Identities=36% Similarity=0.363 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
.=+++++|++|+|||||++.+++-.
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3489999999999999999999854
No 375
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.75 E-value=0.004 Score=58.18 Aligned_cols=48 Identities=15% Similarity=0.148 Sum_probs=34.8
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhh-hcccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS-RLSVIPQDP 579 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~-~I~~V~Qd~ 579 (677)
+.+|.|||||||++++|.+.. |.+.+|+-++... ..+++ ..+...|++
T Consensus 12 ~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~~--~~~~~~~~g~~~~~~ 60 (175)
T 1knq_A 12 VLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHPR--RNIEKMASGEPLNDD 60 (175)
T ss_dssp EEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCCH--HHHHHHHTTCCCCHH
T ss_pred EEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccch--HHHHHhhcCcCCCcc
Confidence 457999999999999999875 7888887766532 22333 467777764
No 376
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.75 E-value=0.0045 Score=62.15 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+|++||++|+|||||++.|+|--
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999999753
No 377
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.74 E-value=0.0044 Score=56.05 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
+++++|++|+|||||++.+.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 699999999999999999985
No 378
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.74 E-value=0.0079 Score=58.02 Aligned_cols=21 Identities=29% Similarity=0.596 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
+++++|++|+|||||++.+.+
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 799999999999999998874
No 379
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.74 E-value=0.0045 Score=56.15 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+++++|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 79999999999999999998754
No 380
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.73 E-value=0.0049 Score=56.50 Aligned_cols=22 Identities=41% Similarity=0.616 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999999864
No 381
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.73 E-value=0.0042 Score=56.40 Aligned_cols=22 Identities=41% Similarity=0.640 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 382
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.73 E-value=0.0026 Score=68.04 Aligned_cols=51 Identities=25% Similarity=0.321 Sum_probs=33.5
Q ss_pred cccccCCCCCchhHHHHHHhhhhcc-ccccccccchhhhhHHHHhhhccccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSS-GQIKIDDFDIASVELETLRSRLSVIPQDPV 580 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~-g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~ 580 (677)
+.+|.||||||||+++|+++++|++ |.|...+..+ +. ..++..++++|...
T Consensus 127 ~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~---~~~~~~~~v~q~~~ 178 (356)
T 3jvv_A 127 LVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EF---VHESKKCLVNQREV 178 (356)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CS---CCCCSSSEEEEEEB
T ss_pred EEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hh---hhhccccceeeeee
Confidence 4579999999999999999999985 5554332221 11 12334556666543
No 383
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.73 E-value=0.0047 Score=56.18 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7999999999999999999854
No 384
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.72 E-value=0.0046 Score=55.98 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999998753
No 385
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.71 E-value=0.0027 Score=65.53 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=34.9
Q ss_pred eEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEec
Q psy845 459 FRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 502 (677)
Q Consensus 459 l~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI 502 (677)
+.+++++.+.|.||+|+||||+++.+++... .+-+.+++.++
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~~~l 85 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPEL 85 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECHHHH
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEhHHH
Confidence 4568899999999999999999999999763 56777776554
No 386
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.70 E-value=0.0047 Score=56.67 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7999999999999999988764
No 387
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.70 E-value=0.0055 Score=59.70 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=23.6
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
++|-.+.++|+.||||||+.+.|+.-+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998754
No 388
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.67 E-value=0.0057 Score=62.00 Aligned_cols=37 Identities=22% Similarity=0.374 Sum_probs=28.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCC-----------CCccEEEECCEec
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVE-----------LSSGQIKIDDFDI 502 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~-----------p~~G~I~IdG~dI 502 (677)
+++++|++|||||||++.|.|-.. ...|.+.++|.++
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~ 50 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLI 50 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEE
Confidence 799999999999999999998632 2345666666543
No 389
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.67 E-value=0.009 Score=56.80 Aligned_cols=21 Identities=33% Similarity=0.642 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
+++++|++|+|||||++.+.+
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 799999999999999999975
No 390
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.67 E-value=0.0023 Score=68.67 Aligned_cols=111 Identities=18% Similarity=0.139 Sum_probs=71.2
Q ss_pred ccccccCCCCCchhHHHHHHhhh-hcccccccc-ccchhhhhHHHHhhhcccccccccccc-cchhhccccCCCCChHHH
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVE-LSSGQIKID-DFDIASVELETLRSRLSVIPQDPVLFN-GTIRYNLDPFGRCHDTEL 601 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~-~~~g~i~~~-~~~~~~~~~~~LR~~I~~V~Qd~~LFs-gTIrENI~~~~~~sdeeI 601 (677)
.+.+|.||||||||+++|+|+.+ |+.|+|..+ |.+. ....++.+++++|++.+++ -|++|+-.. ..+.+++
T Consensus 218 ~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~----~tt~~~~i~~v~q~~~l~dtpgv~e~~l~--~l~~~e~ 291 (358)
T 2rcn_A 218 SIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQ----HTTTAARLYHFPHGGDVIDSPGVREFGLW--HLEPEQI 291 (358)
T ss_dssp EEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHHTCCCC--CCCHHHH
T ss_pred EEEECCCCccHHHHHHHHhccccccccCCccccCCCCc----cceEEEEEEEECCCCEecCcccHHHhhhc--CCCHHHH
Confidence 37789999999999999999999 999999886 6543 1345778999999999885 489997432 2344444
Q ss_pred HHHHHHccchhhHhhhhcccCC--CCCCCCCChHHHHHHHHHHHHhccch
Q psy845 602 WDALEKSHLKSKVVTMRSKLDS--DVQGDQLSLGEKQLLCLARALLRKTK 649 (677)
Q Consensus 602 ~~Al~~a~l~efI~~LP~GldT--~v~G~~LSGGQRQRIaIARALLr~p~ 649 (677)
.+ ...++.+.+ |+.. ...-.++| ||+||+++|++++....
T Consensus 292 ~~-----~~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gli~~~R 333 (358)
T 2rcn_A 292 TQ-----GFVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGAIAETR 333 (358)
T ss_dssp HH-----TSGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTSSCHHH
T ss_pred HH-----HHHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcCCCHHH
Confidence 32 122333222 2211 11456899 99999999999986554
No 391
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.67 E-value=0.0032 Score=60.77 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=26.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCCCCCc---cEEEECC
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRLVELSS---GQIKIDD 499 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~y~p~~---G~I~IdG 499 (677)
..++|+|++||||||+++.|.+.+.... |.|..|.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~ 42 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 42 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCC
Confidence 4799999999999999999998765432 4455443
No 392
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.67 E-value=0.005 Score=56.54 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7999999999999999999853
No 393
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.64 E-value=0.0051 Score=57.14 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+++-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7999999999999999999875
No 394
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.63 E-value=0.0048 Score=62.65 Aligned_cols=22 Identities=41% Similarity=0.711 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
++++||++|+|||||+|.|++-
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999998764
No 395
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.63 E-value=0.0052 Score=55.62 Aligned_cols=21 Identities=29% Similarity=0.635 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
+++++|++|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 799999999999999999985
No 396
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.63 E-value=0.0049 Score=57.37 Aligned_cols=23 Identities=52% Similarity=0.754 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+++++|++|+|||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 89999999999999999998753
No 397
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.63 E-value=0.0049 Score=57.77 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
--+++++|++|+|||||++.+.+-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 398
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.62 E-value=0.0075 Score=63.73 Aligned_cols=28 Identities=21% Similarity=0.140 Sum_probs=25.6
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcC
Q psy845 460 RINHGENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 460 ~I~~GE~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
-+++|+.+.|.||+||||||++..++.-
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999999988874
No 399
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.62 E-value=0.0054 Score=59.26 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+++|.|++||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999996644
No 400
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.61 E-value=0.005 Score=62.31 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVE 489 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~ 489 (677)
+++++|++|||||||++.|+|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 799999999999999999999743
No 401
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.60 E-value=0.0052 Score=58.57 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
.++|.|++||||||+.+.|++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998854
No 402
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.60 E-value=0.011 Score=63.03 Aligned_cols=44 Identities=23% Similarity=0.246 Sum_probs=32.5
Q ss_pred cccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEE
Q psy845 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496 (677)
Q Consensus 453 VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~ 496 (677)
-|+.+.--+++|+.+.|.|++|+||||++.-++.-....++.+.
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl 78 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVA 78 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 45554445899999999999999999998888765433334443
No 403
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.59 E-value=0.0054 Score=64.86 Aligned_cols=38 Identities=29% Similarity=0.334 Sum_probs=29.6
Q ss_pred ccccccccCCCCCchhHHHHHHhhh--hcccc---ccccccch
Q psy845 523 LFNGIVGRTGAGKSSLLVALFRLVE--LSSGQ---IKIDDFDI 560 (677)
Q Consensus 523 lf~~~~~~n~~~~~~~~~~~~~~~~--~~~g~---i~~~~~~~ 560 (677)
+.-|.+|.||||||||+++|.++.+ |++|+ +-+||+..
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~ 135 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLY 135 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccccc
Confidence 3457789999999999999999998 56676 55555543
No 404
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.57 E-value=0.0056 Score=56.67 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7999999999999999999853
No 405
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.56 E-value=0.0047 Score=60.97 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.7
Q ss_pred cccccCCCCCchhHHHHHHhhh
Q psy845 526 GIVGRTGAGKSSLLVALFRLVE 547 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~ 547 (677)
..+|.||||||||+++|++.++
T Consensus 23 vl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 23 VLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp EEECCTTSSHHHHHHHHHHHCT
T ss_pred EEECcCCCCHHHHHHHHHhhCC
Confidence 4579999999999999999876
No 406
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.56 E-value=0.0059 Score=59.85 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=22.7
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
.++..+.|+|++||||||+.+.|+.-+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998644
No 407
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.55 E-value=0.0059 Score=56.80 Aligned_cols=25 Identities=24% Similarity=0.204 Sum_probs=22.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLVEL 490 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y~p 490 (677)
+++++|++|+|||||++.+.+-+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 7999999999999999999987643
No 408
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.54 E-value=0.0061 Score=57.58 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
.++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998765
No 409
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.54 E-value=0.0047 Score=66.42 Aligned_cols=22 Identities=50% Similarity=0.709 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
++||||++|+|||||++.|++.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 410
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.53 E-value=0.0064 Score=57.94 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
++++||++|+|||||++.+.+
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 799999999999999999985
No 411
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.52 E-value=0.0052 Score=57.86 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+.+|+|+|++||||||+.+.|..-+
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3469999999999999999998743
No 412
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.52 E-value=0.0055 Score=63.94 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=21.0
Q ss_pred cccccccCCCCCchhHHHHHHhh
Q psy845 524 FNGIVGRTGAGKSSLLVALFRLV 546 (677)
Q Consensus 524 f~~~~~~n~~~~~~~~~~~~~~~ 546 (677)
++..+|+||||||||+.+|..+.
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHHTS
T ss_pred cEEEECCCCCcHHHHHHHHHHHh
Confidence 67889999999999999999775
No 413
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.52 E-value=0.0059 Score=56.54 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
+++++|++|+|||||++.+.+
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 799999999999999999985
No 414
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.51 E-value=0.0072 Score=57.91 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+..++|+|++||||||+.+.|..-+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998754
No 415
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.51 E-value=0.0058 Score=56.77 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 6899999999999999999875
No 416
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.50 E-value=0.0028 Score=60.27 Aligned_cols=29 Identities=17% Similarity=0.179 Sum_probs=23.8
Q ss_pred cccccCCCCCchhHHHHHHhhhh-cccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVEL-SSGQIK 554 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~-~~g~i~ 554 (677)
+.+|.||||||||+++|.+++++ ..|.|.
T Consensus 9 ~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~ 38 (180)
T 1kgd_A 9 VLLGAHGVGRRHIKNTLITKHPDRFAYPIP 38 (180)
T ss_dssp EEECCTTSSHHHHHHHHHHHCTTTEECCCC
T ss_pred EEECCCCCCHHHHHHHHHhhCCccEEEeee
Confidence 45799999999999999999874 556544
No 417
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.50 E-value=0.0047 Score=59.37 Aligned_cols=54 Identities=7% Similarity=0.023 Sum_probs=39.3
Q ss_pred cccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhcccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP 579 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~ 579 (677)
+.+|+||||||||++.|.+...+++|.+.+.+.+............+++.+|+.
T Consensus 27 ~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (235)
T 2w0m_A 27 ALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEY 80 (235)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGG
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHH
Confidence 456999999999999999999999998877666554333333333566666654
No 418
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.49 E-value=0.0069 Score=55.92 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+++|.|++||||||+.+.|..-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998743
No 419
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.49 E-value=0.007 Score=56.21 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
-+.++|.|+.||||||+.+.|+.-
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999864
No 420
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.48 E-value=0.0062 Score=56.42 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCC
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
..++|.|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998743
No 421
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.46 E-value=0.0065 Score=55.02 Aligned_cols=21 Identities=38% Similarity=0.472 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
+++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999975
No 422
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.46 E-value=0.0072 Score=55.49 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 7999999999999999999863
No 423
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.46 E-value=0.0066 Score=58.74 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+++|.|++||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997644
No 424
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.44 E-value=0.0061 Score=55.75 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
+++++|++|+|||||++.+++
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 799999999999999999985
No 425
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.43 E-value=0.0067 Score=55.20 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHhc
Q psy845 464 GENIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r 486 (677)
.=+++++|++|+|||||++.+.+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 44899999999999999999975
No 426
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.43 E-value=0.0072 Score=56.72 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
.++|.|++||||||+.+.|..-+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
No 427
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.42 E-value=0.005 Score=60.92 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=21.6
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHh
Q psy845 461 INHGENIGIVGRTGAGKSSLLVALF 485 (677)
Q Consensus 461 I~~GE~VAIVGpSGSGKSTLi~LL~ 485 (677)
+.+|+.+.++|||||||||++.+.+
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHH
Confidence 4569999999999999999877664
No 428
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.42 E-value=0.0069 Score=57.92 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
...|+|.|++||||||+.+.|+.-+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998654
No 429
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=95.41 E-value=0.0029 Score=68.69 Aligned_cols=38 Identities=24% Similarity=0.429 Sum_probs=32.9
Q ss_pred cccccccCCCCCchhHHHHHH------------hhhhccccccccccchh
Q psy845 524 FNGIVGRTGAGKSSLLVALFR------------LVELSSGQIKIDDFDIA 561 (677)
Q Consensus 524 f~~~~~~n~~~~~~~~~~~~~------------~~~~~~g~i~~~~~~~~ 561 (677)
--|.+|.||||||||+++|.+ ..+|+.|.+.++|.++.
T Consensus 22 ~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~ 71 (392)
T 1ni3_A 22 KTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFD 71 (392)
T ss_dssp EEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchh
Confidence 347899999999999999999 67899999999886543
No 430
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.40 E-value=0.0048 Score=63.88 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=19.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
++-.|||.|||||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998754
No 431
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.40 E-value=0.0064 Score=59.33 Aligned_cols=26 Identities=15% Similarity=0.114 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
++..+.|+|++||||||+.+.|+.-+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998754
No 432
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.39 E-value=0.007 Score=64.44 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=20.9
Q ss_pred CCCChHHHHHH------HHHHHHhcc-chhh
Q psy845 628 DQLSLGEKQLL------CLARALLRK-TKKK 651 (677)
Q Consensus 628 ~~LSGGQRQRI------aIARALLr~-p~IL 651 (677)
.+|||||+||+ ++|||+.++ |+++
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~l 309 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECI 309 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeE
Confidence 58999999987 678999999 8866
No 433
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.39 E-value=0.007 Score=55.67 Aligned_cols=21 Identities=38% Similarity=0.662 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
+++++|++|+|||||++.+.+
T Consensus 12 ~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 799999999999999999975
No 434
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.37 E-value=0.0071 Score=56.58 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+..++|+|++||||||+.+.|...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998644
No 435
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.36 E-value=0.009 Score=55.87 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999999864
No 436
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.36 E-value=0.01 Score=54.78 Aligned_cols=20 Identities=40% Similarity=0.635 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q psy845 466 NIGIVGRTGAGKSSLLVALF 485 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~ 485 (677)
+++++|++|+|||||++.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 79999999999999999998
No 437
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.35 E-value=0.0073 Score=55.23 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7999999999999999999864
No 438
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.35 E-value=0.0076 Score=55.49 Aligned_cols=22 Identities=36% Similarity=0.640 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7999999999999999999864
No 439
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.33 E-value=0.0057 Score=56.58 Aligned_cols=24 Identities=38% Similarity=0.459 Sum_probs=21.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhc
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r 486 (677)
+.-+++++|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999999984
No 440
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.33 E-value=0.0075 Score=55.57 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
+|+++|++|+|||||++.+++
T Consensus 20 ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 799999999999999999985
No 441
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.32 E-value=0.014 Score=53.97 Aligned_cols=21 Identities=38% Similarity=0.760 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
+++++|++|+|||||++.+.+
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 789999999999999999985
No 442
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.28 E-value=0.0079 Score=56.22 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+|+++|++|+|||||++.+++-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7999999999999999999754
No 443
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.26 E-value=0.0059 Score=65.05 Aligned_cols=40 Identities=23% Similarity=0.337 Sum_probs=30.9
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccE-EEECC
Q psy845 460 RINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ-IKIDD 499 (677)
Q Consensus 460 ~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~-I~IdG 499 (677)
-+++|+.+.|.||+|||||||+..++.-....+|. ++++.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~ 97 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA 97 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 47899999999999999999988777654444454 45554
No 444
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.26 E-value=0.0081 Score=59.94 Aligned_cols=23 Identities=39% Similarity=0.522 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
-+|+|+|++|+|||||++.|++-
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999874
No 445
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.21 E-value=0.0033 Score=61.05 Aligned_cols=30 Identities=40% Similarity=0.472 Sum_probs=25.2
Q ss_pred cccccCCCCCchhHHHHHHhh---hhccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLV---ELSSGQIKI 555 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~---~~~~g~i~~ 555 (677)
+.+|.+||||||++++|.+.+ .+|.|+++.
T Consensus 9 ~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 9 TIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp EEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 467999999999999999887 788886443
No 446
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=95.20 E-value=0.0041 Score=69.21 Aligned_cols=59 Identities=29% Similarity=0.352 Sum_probs=44.6
Q ss_pred cccccccCCCCCchhHHHHHHh----------------------h-h---------------hccccccccccchhhhhH
Q psy845 524 FNGIVGRTGAGKSSLLVALFRL----------------------V-E---------------LSSGQIKIDDFDIASVEL 565 (677)
Q Consensus 524 f~~~~~~n~~~~~~~~~~~~~~----------------------~-~---------------~~~g~i~~~~~~~~~~~~ 565 (677)
++..+|+||||||||+.+|..+ + . .+.+.++++|..++..++
T Consensus 62 ~n~i~G~NGaGKS~lleAl~~llg~r~~~~~i~~g~~~a~v~~~f~~~~~~~~~~i~r~~~~~g~~~~~ing~~v~~~~l 141 (517)
T 4ad8_A 62 FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGAARLSGEVVSVREL 141 (517)
T ss_dssp EEEEEESHHHHHHHHTHHHHHHTCSCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCCEEESSSSBCCHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhcCCcHHHHhcCCCCcEEEEEEEEecCCCCeEEEEEEEecCCCcEEEECCEECCHHHH
Confidence 6678899999999999999666 4 2 335689999999887666
Q ss_pred HHHhh-hccccccccccc
Q psy845 566 ETLRS-RLSVIPQDPVLF 582 (677)
Q Consensus 566 ~~LR~-~I~~V~Qd~~LF 582 (677)
.++-. .+.+++|+..+.
T Consensus 142 ~~~~~~li~i~~q~~~~~ 159 (517)
T 4ad8_A 142 QEWAQGRLTIHWQHSAVS 159 (517)
T ss_dssp HHHHTTTEEEESGGGGGT
T ss_pred HHHhhhheEEeCCchHHh
Confidence 66544 457788886554
No 447
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.19 E-value=0.013 Score=54.96 Aligned_cols=29 Identities=14% Similarity=0.308 Sum_probs=24.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhc------CCCCCcc
Q psy845 465 ENIGIVGRTGAGKSSLLVALFR------LVELSSG 493 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r------~y~p~~G 493 (677)
-+|+++|++|+|||||++.+++ -|.|+-|
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~ 52 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG 52 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCcccccccccc
Confidence 3899999999999999999987 3455555
No 448
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.18 E-value=0.0082 Score=55.65 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7999999999999999999753
No 449
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.17 E-value=0.0089 Score=56.51 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7999999999999999999864
No 450
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.17 E-value=0.0088 Score=56.39 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
+|+++|++|+|||||++.+.+
T Consensus 16 ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999999975
No 451
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.16 E-value=0.0032 Score=69.00 Aligned_cols=48 Identities=15% Similarity=0.225 Sum_probs=39.9
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCcc-EEEECC
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG-QIKIDD 499 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G-~I~IdG 499 (677)
+.|+++..-+++|+.+.|.||+|+||||++..+++-..+.+| .+.+-+
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 367888877999999999999999999999999987766555 566544
No 452
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.15 E-value=0.007 Score=62.98 Aligned_cols=35 Identities=31% Similarity=0.389 Sum_probs=27.9
Q ss_pred cccccCCCCCchhHHHHHHhhhhccc-cccccccch
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSG-QIKIDDFDI 560 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g-~i~~~~~~~ 560 (677)
+.+|.|||||||++..|.+.+++++| .+.+-+.|.
T Consensus 109 ~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 109 VLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 35689999999999999999999999 444444443
No 453
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.14 E-value=0.0086 Score=56.13 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhc
Q psy845 465 ENIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r 486 (677)
=+++++|++|+|||||++.+.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 3799999999999999999986
No 454
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.14 E-value=0.0092 Score=55.95 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7999999999999999999864
No 455
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.13 E-value=0.0046 Score=72.84 Aligned_cols=54 Identities=17% Similarity=0.174 Sum_probs=31.4
Q ss_pred ccccccCCCCCchhHHHHHHhhhh-ccccccccccchhhhhHHHHhhhccccccccccc-ccchhhcccc
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVEL-SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDP 592 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~-~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LF-sgTIrENI~~ 592 (677)
-+.+|.||||||||++++.++..+ +.|. .+ +. -+..++++.| +| .-++.||+..
T Consensus 610 ~~ItGpNGsGKSTlLr~iagl~~~~q~G~-~v--------pa--~~~~i~~~~~---i~~~~~~~d~l~~ 665 (800)
T 1wb9_A 610 LIITGPNMGGKSTYMRQTALIALMAYIGS-YV--------PA--QKVEIGPIDR---IFTRVGAADDLAS 665 (800)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHHTTTC-CB--------SS--SEEEECCCCE---EEEEEC-------
T ss_pred EEEECCCCCChHHHHHHHHHHHHHHhcCc-cc--------ch--hcccceeHHH---HHhhCCHHHHHHh
Confidence 356799999999999999998654 3342 11 10 1346788877 45 4477888854
No 456
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.13 E-value=0.0062 Score=63.89 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=23.4
Q ss_pred cccccccccCCCCCchhHHHHHHhhhh
Q psy845 522 VLFNGIVGRTGAGKSSLLVALFRLVEL 548 (677)
Q Consensus 522 ~lf~~~~~~n~~~~~~~~~~~~~~~~~ 548 (677)
...-|.+|.||||||||+++|.|+.+|
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCchHHHHHHHHHhhccc
Confidence 344577899999999999999999877
No 457
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.13 E-value=0.0069 Score=61.52 Aligned_cols=39 Identities=26% Similarity=0.255 Sum_probs=31.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCCCCCccE-EEECCEec
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLVELSSGQ-IKIDDFDI 502 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~-I~IdG~dI 502 (677)
...+.++||+|+||||+++.+++...+.+|. +.+|..+.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 86 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGC
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccc
Confidence 3589999999999999999999998777774 45554333
No 458
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.12 E-value=0.0045 Score=59.30 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
--+|+++|++|+|||||++.+.+-
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 348999999999999999999873
No 459
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.11 E-value=0.0099 Score=59.47 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
++-+++|.||+||||||+.+.|+.-+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56689999999999999999998644
No 460
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.10 E-value=0.0097 Score=59.54 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCC
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
-+|+|.|++||||||+.+.|...+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999998743
No 461
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.10 E-value=0.0097 Score=54.90 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
+++++|++|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 799999999999999998874
No 462
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.10 E-value=0.0064 Score=63.88 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=19.7
Q ss_pred cccccCCCCCchhHHHHHHhh
Q psy845 526 GIVGRTGAGKSSLLVALFRLV 546 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~ 546 (677)
+.+|.||||||||+++|+|++
T Consensus 130 aIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 130 AFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp EEECSSSSSHHHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHhhhc
Confidence 568999999999999999998
No 463
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.10 E-value=0.0096 Score=55.65 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999999874
No 464
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.09 E-value=0.01 Score=57.92 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcC
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
...+||+|++||||||+.+.|...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999875
No 465
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.09 E-value=0.01 Score=60.91 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCC
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
-+++++|++|+|||||++.|+|-.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 379999999999999999999953
No 466
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.08 E-value=0.015 Score=57.15 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+|++||++|+|||||++.+.+-
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7999999999999999999864
No 467
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.08 E-value=0.011 Score=62.95 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=24.2
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+++..+.|+||||||||||...|+.-+
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHC
Confidence 356789999999999999999999866
No 468
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.06 E-value=0.0094 Score=56.26 Aligned_cols=21 Identities=33% Similarity=0.695 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
+|+++|++|+|||||++.+.+
T Consensus 25 ki~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 799999999999999999975
No 469
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.06 E-value=0.011 Score=55.93 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999999864
No 470
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.06 E-value=0.0065 Score=58.49 Aligned_cols=96 Identities=17% Similarity=0.080 Sum_probs=70.0
Q ss_pred ccccccCCCCCchhHHHHHHhhhhccccccccccchhhhhHHHHhhhccccccccccccc---chhhccc--cC--CCCC
Q psy845 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG---TIRYNLD--PF--GRCH 597 (677)
Q Consensus 525 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsg---TIrENI~--~~--~~~s 597 (677)
-+.+|.||||||||+++|.++++| ++++++||+++++. |+++|.. +. +...
T Consensus 9 i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (211)
T 3asz_A 9 IGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFD 66 (211)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCCChhhhh
Confidence 467899999999999999999875 58999999999854 5666653 21 1233
Q ss_pred hHHHHHHHHHccchhhHhhhhcccCCCCCCCCCChHH----HHHHHHHHHHhccchhh
Q psy845 598 DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGE----KQLLCLARALLRKTKKK 651 (677)
Q Consensus 598 deeI~~Al~~a~l~efI~~LP~GldT~v~G~~LSGGQ----RQRIaIARALLr~p~IL 651 (677)
.+++.++++..++.+.+.. .+.++|+|| +||+++||+++.+|+++
T Consensus 67 ~~~~~~~l~~~~~~~~~~~---------~~~~~s~g~~~~~~~~~~~~~~li~~~~ll 115 (211)
T 3asz_A 67 LALYLEHAQALLRGLPVEM---------PVYDFRAYTRSPRRTPVRPAPVVILEGILV 115 (211)
T ss_dssp HHHHHHHHHHHHTTCCEEE---------CCEETTTTEECSSCEEECCCSEEEEESTTT
T ss_pred HHHHHHHHHHHHcCCCcCC---------CcccCcccCCCCCeEEeCCCcEEEEeehhh
Confidence 4567777777766554432 345677775 57999999998887644
No 471
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.05 E-value=0.01 Score=55.62 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
+|+++|++|+|||||++.+.+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 799999999999999999974
No 472
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.04 E-value=0.011 Score=55.92 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+|+++|++|+|||||++.+.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999999864
No 473
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.03 E-value=0.01 Score=56.96 Aligned_cols=24 Identities=38% Similarity=0.391 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCC
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
-+++++|++|+|||||++.+.+-.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999998754
No 474
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.01 E-value=0.0055 Score=58.95 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 464 GENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
.-+|+++|++|+|||||++.|++-.
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3489999999999999999999864
No 475
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.01 E-value=0.011 Score=57.59 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
-+|+++|++|+|||||++.+++-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 38999999999999999999874
No 476
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.98 E-value=0.012 Score=54.07 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcC
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+.=+++++|++|+|||||++.+.+-
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999853
No 477
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.98 E-value=0.01 Score=56.49 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
=+++++|++|+|||||++.+.+-
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 38999999999999999999874
No 478
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.97 E-value=0.0077 Score=56.71 Aligned_cols=26 Identities=35% Similarity=0.539 Sum_probs=23.7
Q ss_pred ccccCCCCCchhHHHHHHhhhhcccc
Q psy845 527 IVGRTGAGKSSLLVALFRLVELSSGQ 552 (677)
Q Consensus 527 ~~~~n~~~~~~~~~~~~~~~~~~~g~ 552 (677)
..|.||+|||||++++.+...|++|.
T Consensus 43 l~G~~G~GKTtL~~~i~~~~~~~~g~ 68 (180)
T 3ec2_A 43 FVGSPGVGKTHLAVATLKAIYEKKGI 68 (180)
T ss_dssp ECCSSSSSHHHHHHHHHHHHHHHSCC
T ss_pred EECCCCCCHHHHHHHHHHHHHHHcCC
Confidence 46899999999999999999999884
No 479
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.96 E-value=0.01 Score=55.68 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+|+++|++|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999998753
No 480
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.92 E-value=0.012 Score=59.29 Aligned_cols=26 Identities=27% Similarity=0.301 Sum_probs=22.7
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcC
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++..|.++|++||||||+.+.|...
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999875
No 481
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.91 E-value=0.012 Score=61.21 Aligned_cols=22 Identities=41% Similarity=0.661 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++|||++|+|||||++.|+|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999984
No 482
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.90 E-value=0.0028 Score=60.40 Aligned_cols=30 Identities=33% Similarity=0.481 Sum_probs=19.6
Q ss_pred cccccCCCCCchhHHHHHHhh-----hhccccccc
Q psy845 526 GIVGRTGAGKSSLLVALFRLV-----ELSSGQIKI 555 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~-----~~~~g~i~~ 555 (677)
+.+|+||||||||+++|.|.. .|+.|..+.
T Consensus 30 ~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~ 64 (210)
T 1pui_A 30 AFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL 64 (210)
T ss_dssp EEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred EEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence 568999999999999999988 788886554
No 483
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.90 E-value=0.021 Score=61.92 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=30.1
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcCCCCCccEEEECCEec
Q psy845 460 RINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 502 (677)
Q Consensus 460 ~I~~GE~VAIVGpSGSGKSTLi~LL~r~y~p~~G~I~IdG~dI 502 (677)
.-++++.+.++|++||||||+.+.|+.-+ |-..+|.-++
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~----~~~~i~~D~~ 292 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSA----GYVHVNRDTL 292 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGGG----TCEECCGGGS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHhc----CcEEEccchH
Confidence 34567899999999999999999998743 5556665444
No 484
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.89 E-value=0.012 Score=55.39 Aligned_cols=22 Identities=41% Similarity=0.566 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7999999999999999999853
No 485
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.87 E-value=0.011 Score=55.57 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+|+++|++|+|||||++.+.+-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 7999999999999999999864
No 486
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.86 E-value=0.0069 Score=67.32 Aligned_cols=35 Identities=29% Similarity=0.381 Sum_probs=31.0
Q ss_pred ccccceeeEEeCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 452 ~VLknISl~I~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
..++++++++++| +.|+||+|+||||+++.+++-.
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 4788888888888 8999999999999999999854
No 487
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.86 E-value=0.012 Score=54.76 Aligned_cols=22 Identities=45% Similarity=0.631 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7999999999999999999763
No 488
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.86 E-value=0.012 Score=55.85 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
=+|+++|++|+|||||++.+++-
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 48999999999999999999843
No 489
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.85 E-value=0.013 Score=54.88 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhc
Q psy845 464 GENIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r 486 (677)
.=+++++|++|+|||||++.+.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 44899999999999999999984
No 490
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.83 E-value=0.0078 Score=61.40 Aligned_cols=111 Identities=10% Similarity=-0.031 Sum_probs=65.3
Q ss_pred cccccCCCCCchhHHHHHHhhhhccc-cccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCChHHHHHH
Q psy845 526 GIVGRTGAGKSSLLVALFRLVELSSG-QIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDA 604 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~~~~~g-~i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sdeeI~~A 604 (677)
+.+|+||||||||++.|.+..+|++| .+.+.+.+ ++.+++++++..+.|+..+ +..+|+..+ ..++++..++
T Consensus 39 ~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~~l~~~-~~~~~~~~~~ 111 (296)
T 1cr0_A 39 MVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSDSLKRE-IIENGKFDQW 111 (296)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCHHHHHH-HHHHTHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhccccccC-CCCHHHHHHH
Confidence 45799999999999999999999988 66443332 2455677776666655432 223344311 1222333332
Q ss_pred HHHccchhhHhhhhcccCCCCCCCCCChHH-HHHHHHHHHHhccchhh
Q psy845 605 LEKSHLKSKVVTMRSKLDSDVQGDQLSLGE-KQLLCLARALLRKTKKK 651 (677)
Q Consensus 605 l~~a~l~efI~~LP~GldT~v~G~~LSGGQ-RQRIaIARALLr~p~IL 651 (677)
.+.. +...+-+++. ...++|.+| +||+. |+|+..+|+++
T Consensus 112 ~~~~-----l~~~~l~i~~--~~~~~~~~~l~~~~~-a~~~~~~p~ll 151 (296)
T 1cr0_A 112 FDEL-----FGNDTFHLYD--SFAEAETDRLLAKLA-YMRSGLGCDVI 151 (296)
T ss_dssp HHHH-----HSSSCEEEEC--CCCSCCHHHHHHHHH-HHHHTTCCSEE
T ss_pred HHHH-----hccCCEEEEC--CCCCCCHHHHHHHHH-HHHHhcCCCEE
Confidence 2221 1111111111 124688998 77777 99998888754
No 491
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.82 E-value=0.013 Score=55.89 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 7999999999999999999853
No 492
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.79 E-value=0.015 Score=53.37 Aligned_cols=27 Identities=22% Similarity=0.459 Sum_probs=23.4
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 462 NHGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 462 ~~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+.+..+.|+||+|+||||+++.+++.+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999998764
No 493
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.79 E-value=0.012 Score=54.97 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q psy845 466 NIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r 486 (677)
+++++|++|+|||||++.+.+
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 799999999999999999986
No 494
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.79 E-value=0.012 Score=60.29 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhc
Q psy845 464 GENIGIVGRTGAGKSSLLVALFR 486 (677)
Q Consensus 464 GE~VAIVGpSGSGKSTLi~LL~r 486 (677)
...|+|+|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999985
No 495
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.79 E-value=0.013 Score=57.13 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCC
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
+|-.+.+.|+.||||||+.+.|+.-+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998755
No 496
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.78 E-value=0.013 Score=55.12 Aligned_cols=22 Identities=36% Similarity=0.529 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
+++++|++|+|||||++.+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7999999999999999999874
No 497
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.78 E-value=0.013 Score=55.27 Aligned_cols=23 Identities=39% Similarity=0.700 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhcC
Q psy845 465 ENIGIVGRTGAGKSSLLVALFRL 487 (677)
Q Consensus 465 E~VAIVGpSGSGKSTLi~LL~r~ 487 (677)
=+++++|++|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999753
No 498
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.77 E-value=0.0079 Score=63.88 Aligned_cols=75 Identities=20% Similarity=0.182 Sum_probs=58.2
Q ss_pred cccccCCCCCchhHHHHHHhh--hhcc----cc-ccccccchhhhhHHHHhhhcccccccccccccchhhccccCCCCCh
Q psy845 526 GIVGRTGAGKSSLLVALFRLV--ELSS----GQ-IKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHD 598 (677)
Q Consensus 526 ~~~~~n~~~~~~~~~~~~~~~--~~~~----g~-i~~~~~~~~~~~~~~LR~~I~~V~Qd~~LFsgTIrENI~~~~~~sd 598 (677)
+.+|+||||||||+..+.+.+ +|++ |. +++|+++.. .++++++++|++.++..++.||+.+....+.
T Consensus 135 ~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 135 EVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp EEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred EEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 357999999999999999999 7887 57 999998852 3578899999999998899999976443333
Q ss_pred HHHHHHHH
Q psy845 599 TELWDALE 606 (677)
Q Consensus 599 eeI~~Al~ 606 (677)
++..+.++
T Consensus 209 ~~~~~~l~ 216 (349)
T 1pzn_A 209 NHQMLLVQ 216 (349)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 499
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.77 E-value=0.013 Score=59.99 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q psy845 466 NIGIVGRTGAGKSSLLVALFRLV 488 (677)
Q Consensus 466 ~VAIVGpSGSGKSTLi~LL~r~y 488 (677)
.+++||++|||||||++.|+|-.
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 79999999999999999999865
No 500
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.77 E-value=0.015 Score=56.01 Aligned_cols=29 Identities=17% Similarity=0.137 Sum_probs=25.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcCCCCC
Q psy845 463 HGENIGIVGRTGAGKSSLLVALFRLVELS 491 (677)
Q Consensus 463 ~GE~VAIVGpSGSGKSTLi~LL~r~y~p~ 491 (677)
++..+.|.||+|+||||+++.+++.....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 68899999999999999999998866433
Done!