RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy845
(677 letters)
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 235 bits (603), Expect = 2e-73
Identities = 112/273 (41%), Positives = 139/273 (50%), Gaps = 91/273 (33%)
Query: 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
G I+FKNVSLRYR N P VL N+SF I GE +GIVGRTG+GKSSLL+ALFRLVELSSG
Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 495 IKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIK 554
I ID DI+ + L LRSR+S+IPQDPVLF+G
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQDPVLFSG---------------------------- 92
Query: 555 IDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKV 614
T+RS NLDPFG D ELW ALE+ LK V
Sbjct: 93 ------------TIRS------------------NLDPFGEYSDEELWQALERVGLKEFV 122
Query: 615 VTMRSKLDSDVQ--GDQLSLGEKQLLCLARALLRKTK----------------------- 649
++ LD+ V+ G+ LS+G++QLLCLARALLRK+K
Sbjct: 123 ESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTI 182
Query: 650 --KKKKSGVNIT-----RPVTSCDKVLVMDNGQ 675
K V +T + D++LV+D G+
Sbjct: 183 REAFKDCTV-LTIAHRLDTIIDSDRILVLDKGR 214
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 241 bits (617), Expect = 9e-68
Identities = 141/422 (33%), Positives = 224/422 (53%), Gaps = 76/422 (18%)
Query: 235 NMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVS 294
++++++ A ++I P A+ + + LY + + + + R+LKR+E+VSRSP++S+ +
Sbjct: 1089 SLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFN 1148
Query: 295 STVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIAMAIITG 354
T+ G+ +I F +++ F+ + + DEN + +A RWLAVR++ + +
Sbjct: 1149 ETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAAL 1208
Query: 355 LTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSK--KLVP- 411
V S+S L GL+++Y+ VT L + VR+ E E N +AVER+ S+ K P
Sbjct: 1209 FAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPW 1268
Query: 412 --EGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGI 469
+ P + WP +G ++F+N LRYR++ LVL +++ I+ GE +GI
Sbjct: 1269 QIQETAPPSG-----------WPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGI 1317
Query: 470 VGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVG 529
VGRTGAGKSSL + LFR+ E + G+I ID +IA + L LR ++++IPQDPVLF+G
Sbjct: 1318 VGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSG--- 1374
Query: 530 RTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYN 589
+LR L
Sbjct: 1375 -------------------------------------SLRMNL----------------- 1380
Query: 590 LDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQ--GDQLSLGEKQLLCLARALLRK 647
DPF + D E+W ALE +HLK+ V + KLD + G+ LS+G++QL+CLARALLRK
Sbjct: 1381 -DPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRK 1439
Query: 648 TK 649
TK
Sbjct: 1440 TK 1441
Score = 36.1 bits (83), Expect = 0.075
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
+I N + + + P L ++F I G + +VG+ G GKSSLL AL ++ G +
Sbjct: 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 695
Query: 496 KI 497
+
Sbjct: 696 HM 697
Score = 34.9 bits (80), Expect = 0.19
Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 19/153 (12%)
Query: 495 IKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIK 554
+ F A TL IP+ ++ +VG+ G GKSSLL AL ++ G +
Sbjct: 639 VHNATFTWARDLPPTLNGITFSIPEGALV--AVVGQVGCGKSSLLSALLAEMDKVEGHV- 695
Query: 555 IDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDA-LEKSHLKSK 613
++ ++ +PQ + N ++R N+ FG+ + + + LE L
Sbjct: 696 ------------HMKGSVAYVPQQAWIQNDSLRENI-LFGKALNEKYYQQVLEACALLPD 742
Query: 614 VVTMRSKLDSDV--QGDQLSLGEKQLLCLARAL 644
+ + S +++ +G LS G+KQ + LARA+
Sbjct: 743 LEILPSGDRTEIGEKGVNLSGGQKQRVSLARAV 775
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 231 bits (592), Expect = 2e-64
Identities = 147/440 (33%), Positives = 219/440 (49%), Gaps = 94/440 (21%)
Query: 231 SVFQNM-----WSMLFAFLMICFVFP---WFALPLLIITTLYHLISKVFRIAVRELKRME 282
+VF NM + +L F++I V W +PLL+ L++ ++ RE+KR++
Sbjct: 1028 AVFVNMFLGQIFQLLSTFVLIGIVSTISLWAIMPLLV---LFYGAYLYYQSTAREVKRLD 1084
Query: 283 NVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSM-AMRWLAVRI 341
+++RSP+++ ++GL I + K D + + +N+ L +M + RWLA+R+
Sbjct: 1085 SITRSPVYAQFGEALNGLSTIRAY-KAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRL 1143
Query: 342 DVLAVIAMAIITGLTVAFHGSVSPALA-----GLALTYASHVTGLLQFTVRVFVETELNF 396
+ L + + + V +G A GL L+YA ++T LL +R+ E +
Sbjct: 1144 ETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSL 1203
Query: 397 LAVERINN-----CSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWP 451
AVER+ LV E P WP G+IKF++V LRYR P
Sbjct: 1204 NAVERVGTYIDLPSEAPLVIENNRPPPG-----------WPSSGSIKFEDVVLRYRPELP 1252
Query: 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR 511
VL HG LS F+I+
Sbjct: 1253 PVL--------HG-------------------------LS--------FEIS-------- 1263
Query: 512 SRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 571
P + V GIVGRTGAGKSS+L ALFR+VEL G+I ID DI+ L LR
Sbjct: 1264 ------PSEKV---GIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKV 1314
Query: 572 LSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQ--GDQ 629
L +IPQ PVLF+GT+R+NLDPF +D +LW++LE++HLK + LD++V G+
Sbjct: 1315 LGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGEN 1374
Query: 630 LSLGEKQLLCLARALLRKTK 649
S+G++QLL LARALLR++K
Sbjct: 1375 FSVGQRQLLSLARALLRRSK 1394
Score = 40.1 bits (94), Expect = 0.005
Identities = 38/129 (29%), Positives = 56/129 (43%), Gaps = 32/129 (24%)
Query: 527 IVGRTGAGKSSLLVA-LFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
IVG TG GK+SL+ A L L S + +R ++ +PQ +FN T
Sbjct: 648 IVGSTGEGKTSLISAMLGELPPRSDASV-------------VIRGTVAYVPQVSWIFNAT 694
Query: 586 IRYNLDPFGRCHDTE-LWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGE---------K 635
+R N+ FG D E A++ V ++ LD GD +GE K
Sbjct: 695 VRDNI-LFGSPFDPERYERAID-------VTALQHDLDLLPGGDLTEIGERGVNISGGQK 746
Query: 636 QLLCLARAL 644
Q + +ARA+
Sbjct: 747 QRVSMARAV 755
Score = 35.9 bits (83), Expect = 0.094
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 14/76 (18%)
Query: 454 LANVSFRINHGENIGIVGRTGAGKSSLLVA-LFRLVELSSGQIKIDDFDIASVELETLRS 512
L+N++ + G + IVG TG GK+SL+ A L L S + +R
Sbjct: 633 LSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASV-------------VIRG 679
Query: 513 RLSVIPQDPVLFNGIV 528
++ +PQ +FN V
Sbjct: 680 TVAYVPQVSWIFNATV 695
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 190 bits (485), Expect = 1e-50
Identities = 138/507 (27%), Positives = 221/507 (43%), Gaps = 127/507 (25%)
Query: 231 SVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIF 290
+ Q ++S+ + L+ P+ + L+ LY+ + + + A RE++R+++V++SP+F
Sbjct: 1078 YLLQCLFSICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVF 1137
Query: 291 SNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRID-----VLA 345
+ + + G I + K ++ + D + +L ++A RWL VR++ V+
Sbjct: 1138 TLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVT 1197
Query: 346 VIAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVER---- 401
VIA+ + G T+ S L L+LT A T L + VR E + +VER
Sbjct: 1198 VIALIGVIG-TMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYY 1256
Query: 402 INNCSKKLVPEGR-----------------GPITSEFGQVKVKLADWPRQGTIKFKNVSL 444
+ + +PE G + E + G++ F+ V +
Sbjct: 1257 TDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQM 1316
Query: 445 RYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 504
RYR+ PLVL VS F IA
Sbjct: 1317 RYREGLPLVLRGVS-----------------------------------------FRIA- 1334
Query: 505 VELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE 564
P++ V GIVGRTG+GKS+LL+ R+VE+ G+I+++ +I +
Sbjct: 1335 -------------PREKV---GIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYG 1378
Query: 565 LETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSD 624
L LR + S+IPQDPVLF+GT+R N+DPF E+W ALE L+ +V + +DS
Sbjct: 1379 LRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSR 1438
Query: 625 VQ--GDQLSLGEKQLLCLARALLRKTKKKKKSG--------VNIT--------------- 659
V G S+G++QL+C+ARALL KK SG NI
Sbjct: 1439 VLEGGSNYSVGQRQLMCMARALL-----KKGSGFILMDEATANIDPALDRQIQATVMSAF 1493
Query: 660 ------------RPVTSCDKVLVMDNG 674
V DK++VMD+G
Sbjct: 1494 SAYTVITIAHRLHTVAQYDKIIVMDHG 1520
Score = 47.9 bits (114), Expect = 2e-05
Identities = 40/142 (28%), Positives = 71/142 (50%), Gaps = 25/142 (17%)
Query: 505 VELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE 564
V + R +L+V+ +G TG+GKS+LL +L E+S G++ +
Sbjct: 679 VSVSVPRGKLTVV----------LGATGSGKSTLLQSLLSQFEISEGRVWAE-------- 720
Query: 565 LETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSD 624
RS ++ +PQ + N T+R N+ F L DA+ S L++ + + L+++
Sbjct: 721 ----RS-IAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETE 775
Query: 625 V--QGDQLSLGEKQLLCLARAL 644
+ +G LS G+K + LARA+
Sbjct: 776 IGEKGVNLSGGQKARVSLARAV 797
Score = 35.1 bits (81), Expect = 0.17
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
+L +VS + G+ ++G TG+GKS+LL +L E+S G++
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV 717
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 171 bits (435), Expect = 2e-49
Identities = 91/274 (33%), Positives = 125/274 (45%), Gaps = 103/274 (37%)
Query: 431 WPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL 490
WP G I+ +N+S+RY + P VL NVSF++ GE IGIVGRTGAGKS+L++ALFR +E
Sbjct: 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA 60
Query: 491 SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSS 550
G+I+ID DI+++ LE LRS L++IPQDP LF+G
Sbjct: 61 EEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSG------------------------ 96
Query: 551 GQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHL 610
T+RS NLDPF D E++ AL S
Sbjct: 97 ----------------TIRS------------------NLDPFDEYSDEEIYGALRVSE- 121
Query: 611 KSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTK--------------------- 649
G LS G++QLLCLARALL++ +
Sbjct: 122 ---------------GGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQK 166
Query: 650 --KKKKSGVNIT------RPVTSCDKVLVMDNGQ 675
+++ + I R + DK+LVMD G+
Sbjct: 167 TIREEFTNSTILTIAHRLRTIIDYDKILVMDAGE 200
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 168 bits (426), Expect = 3e-43
Identities = 108/315 (34%), Positives = 171/315 (54%), Gaps = 30/315 (9%)
Query: 229 LRSVFQN-MWSMLFAFLMICFVFP---WFALPLLIITTLYHLISKVFRIAVRELKRMENV 284
L ++F N +W +L F +I V W +PLLI L++ ++ RE++R+++V
Sbjct: 1027 LMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLI---LFYAAYLYYQSTSREVRRLDSV 1083
Query: 285 SRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAM-RWLAVRIDV 343
+RSPI++ ++GL I + K D + + + +N+ L + + RWL +R++
Sbjct: 1084 TRSPIYAQFGEALNGLSSIRAY-KAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLET 1142
Query: 344 LAVIAMAIITGLTVAFHGSVS-----PALAGLALTYASHVTGLLQFTVRVFVETELNFLA 398
L + + + V +G+ + GL L+Y ++T LL +R + E + +
Sbjct: 1143 LGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNS 1202
Query: 399 VERINN-----CSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLV 453
VER+ N + E P++ WP +G+IKF++V LRYR P V
Sbjct: 1203 VERVGNYIDLPSEATAIIENNRPVSG-----------WPSRGSIKFEDVHLRYRPGLPPV 1251
Query: 454 LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513
L +SF ++ E +G+VGRTGAGKSS+L ALFR+VEL G+I IDD D+A L LR
Sbjct: 1252 LHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRV 1311
Query: 514 LSVIPQDPVLFNGIV 528
LS+IPQ PVLF+G V
Sbjct: 1312 LSIIPQSPVLFSGTV 1326
Score = 148 bits (375), Expect = 5e-37
Identities = 90/221 (40%), Positives = 127/221 (57%), Gaps = 37/221 (16%)
Query: 491 SSGQIKIDDFDIA-SVELETLRSRLS--VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVE 547
S G IK +D + L + LS V P + V G+VGRTGAGKSS+L ALFR+VE
Sbjct: 1231 SRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKV---GVVGRTGAGKSSMLNALFRIVE 1287
Query: 548 LSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEK 607
L G+I IDD D+A L LR LS+IPQ PVLF+GT+R+N+DPF +D +LW+ALE+
Sbjct: 1288 LEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALER 1347
Query: 608 SHLKSKVVTMRSKLDSDVQ--GDQLSLGEKQLLCLARALLRKTK----KKKKSGVNIT-- 659
+H+K + LD++V G+ S+G++QLL LARALLR++K + + V++
Sbjct: 1348 AHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTD 1407
Query: 660 -----------------------RPVTSCDKVLVMDNGQAL 677
+ CDK+LV+ +GQ L
Sbjct: 1408 SLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVL 1448
Score = 42.7 bits (100), Expect = 7e-04
Identities = 39/121 (32%), Positives = 66/121 (54%), Gaps = 16/121 (13%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
IVG TG GK+SL+ A+ L ELS + +SV +R ++ +PQ +FN T+
Sbjct: 648 IVGGTGEGKTSLISAM--LGELSHAET-------SSV---VIRGSVAYVPQVSWIFNATV 695
Query: 587 RYNLDPFGRCHDTE-LWDALEKSHLKSKVVTM--RSKLDSDVQGDQLSLGEKQLLCLARA 643
R N+ FG ++E W A++ + L+ + + R + +G +S G+KQ + +ARA
Sbjct: 696 RENI-LFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARA 754
Query: 644 L 644
+
Sbjct: 755 V 755
Score = 34.6 bits (79), Expect = 0.22
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 12/75 (16%)
Query: 454 LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513
L++++ I G + IVG TG GK+SL+ A+ L ELS + +SV +R
Sbjct: 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAM--LGELSHAE-------TSSV---VIRGS 680
Query: 514 LSVIPQDPVLFNGIV 528
++ +PQ +FN V
Sbjct: 681 VAYVPQVSWIFNATV 695
>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the
sulfonylurea receptor SUR. The SUR domain 2. The
sulfonylurea receptor SUR is an ATP binding cassette
(ABC) protein of the ABCC/MRP family. Unlike other ABC
proteins, it has no intrinsic transport function,
neither active nor passive, but associates with the
potassium channel proteins Kir6.1 or Kir6.2 to form the
ATP-sensitive potassium (K(ATP)) channel. Within the
channel complex, SUR serves as a regulatory subunit that
fine-tunes the gating of Kir6.x in response to
alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 257
Score = 145 bits (366), Expect = 3e-39
Identities = 67/125 (53%), Positives = 93/125 (74%), Gaps = 2/125 (1%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
GI GRTG+GKSSL +A FR+V++ G+I ID DI+ + L TLRSRLS+I QDP+LF+G+
Sbjct: 51 GICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGS 110
Query: 586 IRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQ--GDQLSLGEKQLLCLARA 643
IR+NLDP +C D LW+ALE + LK+ V ++ LD+ V G+ S+G++QL CLARA
Sbjct: 111 IRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARA 170
Query: 644 LLRKT 648
+RK+
Sbjct: 171 FVRKS 175
Score = 103 bits (259), Expect = 9e-25
Identities = 47/94 (50%), Positives = 66/94 (70%)
Query: 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
G IK ++ +RY +N VL +V I G+ +GI GRTG+GKSSL +A FR+V++ G+
Sbjct: 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK 77
Query: 495 IKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV 528
I ID DI+ + L TLRSRLS+I QDP+LF+G +
Sbjct: 78 IVIDGIDISKLPLHTLRSRLSIILQDPILFSGSI 111
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 142 bits (359), Expect = 8e-36
Identities = 106/556 (19%), Positives = 203/556 (36%), Gaps = 115/556 (20%)
Query: 135 LRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLF 194
LR + + + L ++ + L LL+ + +I + + + +L
Sbjct: 4 LRRLLKYLKYKLLLLAILLLLL-SALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLA 62
Query: 195 AFLMICFVFPWFALPLLIITTLYHLISKVFRSVY-------------------------L 229
+ + L + L +F + +
Sbjct: 63 LLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAV 122
Query: 230 RSVFQNMWSMLF--------AFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRM 281
++ + ++F + +++ + AL LL+I L L+ + R+L R
Sbjct: 123 SNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRR 182
Query: 282 ENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRI 341
+ + + + ++SG+ +I F E ++RF E +E S LA +
Sbjct: 183 VREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLM 242
Query: 342 DVLAVIAMAII--TGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAV 399
+L+ + ++ G + GS++ + Y + + V + A
Sbjct: 243 LLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAA 302
Query: 400 ERINNC--SKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANV 457
ER+ + V + P+ G+I+F+N V
Sbjct: 303 ERLFELLDEEPEVEDPPDPL-------------KDTIGSIEFEN---------------V 334
Query: 458 SFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVI 517
SF + + + D + E +
Sbjct: 335 SFSYPGKKPV-----------------------------LKDISFSIEPGEKV------- 358
Query: 518 PQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQ 577
IVG +G+GKS+L+ L RL + +SG+I ID DI + L++LR R+ ++ Q
Sbjct: 359 --------AIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQ 410
Query: 578 DPVLFNGTIRYNLDPFGRCHDT--ELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLG 633
DP+LF+GTIR N+ GR T E+ +AL+ ++ + + D+ V +G LS G
Sbjct: 411 DPLLFSGTIRENIA-LGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGG 469
Query: 634 EKQLLCLARALLRKTK 649
++Q L +ARALLR
Sbjct: 470 QRQRLAIARALLRNPP 485
Score = 30.1 bits (68), Expect = 4.5
Identities = 17/171 (9%), Positives = 45/171 (26%), Gaps = 29/171 (16%)
Query: 5 FLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVIQNMWSMLFAFLMICFVFPWFAL 64
L I + L LL+ + +I + + + + +L + +
Sbjct: 17 LLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRALQSYLG 76
Query: 65 PLLIITTLYHLISKVFRSV-----------------------------YLRSTDEVFQNM 95
L + L +F + + + +
Sbjct: 77 SRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTS 136
Query: 96 WSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSML 146
+L L++ F W +L++ + + R + + + L
Sbjct: 137 ILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREAL 187
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or lesions
in the genetic loci have been linked to the aetiology of
asthma, bronchiectasis, chronic obstructive pulmonary
disease etc. Disease-causing mutations have been studied
by 36Cl efflux assays in vitro cell cultures and
electrophysiology, all of which point to the impairment
of chloride channel stability and not the biosynthetic
processing per se [Transport and binding proteins,
Anions].
Length = 1490
Score = 138 bits (348), Expect = 2e-33
Identities = 108/407 (26%), Positives = 183/407 (44%), Gaps = 75/407 (18%)
Query: 254 ALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFV 313
A+P+ +I + ++ F ++LK++E+ +RSPIFS++ +++ GL I F ++ F
Sbjct: 1031 AIPVAVI---FIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFE 1087
Query: 314 RRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIAMAIITGLTVAFHGSVSPALAGLALT 373
F + + ++ FL +RW +RID++ V +T + + + G+ LT
Sbjct: 1088 TLFHKALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGTNQ-DGEGEVGIILT 1146
Query: 374 YASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLVPEGRGPI--TSEFGQVKVKLAD- 430
A ++ LQ+ V ++ + +V R+ L E P ++ V + +
Sbjct: 1147 LAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFID-LPQEEPRPSGGGGKYQLSTVLVIEN 1205
Query: 431 ------WPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVAL 484
WP G + + ++ +Y + VL ++SF + G+ +G++GRTG+GKS+LL AL
Sbjct: 1206 PHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSAL 1265
Query: 485 FRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFR 544
RL+ + G+I+ID SV L+T R VIPQ +F+G
Sbjct: 1266 LRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG------------------ 1306
Query: 545 LVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDA 604
T R L DP + + D E+W
Sbjct: 1307 ----------------------TFRKNL-----DP-------------YEQWSDEEIWKV 1326
Query: 605 LEKSHLKSKVVTMRSKLDSDVQ--GDQLSLGEKQLLCLARALLRKTK 649
E+ LKS + KLD + G LS G KQL+CLAR++L K K
Sbjct: 1327 AEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAK 1373
Score = 44.5 bits (105), Expect = 2e-04
Identities = 20/44 (45%), Positives = 31/44 (70%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
VL N+SF++ G+ + + G TG+GKSSLL+ + +E S G+IK
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIK 484
Score = 43.4 bits (102), Expect = 5e-04
Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 17/123 (13%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
+ G TG+GKSSLL+ + +E S G+IK R+S PQ + GTI
Sbjct: 457 VAGSTGSGKSSLLMMIMGELEPSEGKIKHS-------------GRISFSPQTSWIMPGTI 503
Query: 587 RYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGD---QLSLGEKQLLCLARA 643
+ N+ FG +D + ++ K+ + + + + D V G+ LS G++ + LARA
Sbjct: 504 KDNI-IFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARA 562
Query: 644 LLR 646
+ +
Sbjct: 563 VYK 565
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 118 bits (298), Expect = 9e-31
Identities = 43/90 (47%), Positives = 60/90 (66%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+FKNVS Y VL +VS I GE + IVG +G+GKS+LL L RL + +SG+I
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFNG 526
ID D+ ++LE+LR ++ +PQDP LF+G
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSG 90
Score = 111 bits (280), Expect = 2e-28
Identities = 51/181 (28%), Positives = 79/181 (43%), Gaps = 68/181 (37%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 583
IVG +G+GKS+LL L RL + +SG+I ID D+ ++LE+LR ++ +PQDP LF+
Sbjct: 30 KVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS 89
Query: 584 GTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARA 643
GTIR N+ LS G++Q + +ARA
Sbjct: 90 GTIRENI---------------------------------------LSGGQRQRIAIARA 110
Query: 644 LLRKTK--------------------------KKKKSGVNIT-RP--VTSCDKVLVMDNG 674
LLR K K+ + I R + D+++V+D+G
Sbjct: 111 LLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDG 170
Query: 675 Q 675
+
Sbjct: 171 R 171
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 118 bits (297), Expect = 6e-30
Identities = 61/182 (33%), Positives = 99/182 (54%), Gaps = 34/182 (18%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
IVG +G+GKS++L LFR ++SSG I ID DI V L++LR + V+PQD VLFN TI
Sbjct: 32 IVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTI 91
Query: 587 RYNLDPFGR--CHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLAR 642
YN+ +GR D E+ +A + + + K++ D+ V +G +LS GEKQ + +AR
Sbjct: 92 GYNIR-YGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIAR 150
Query: 643 ALLRK----------------TKK----------KKKSGVNIT---RPVTSCDKVLVMDN 673
A+L+ T++ K ++ + I + + DK++V+ +
Sbjct: 151 AILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKD 210
Query: 674 GQ 675
G+
Sbjct: 211 GR 212
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 123 bits (312), Expect = 2e-29
Identities = 94/445 (21%), Positives = 171/445 (38%), Gaps = 70/445 (15%)
Query: 112 FALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYH 171
A LL + L + V + + S L + L++ L+
Sbjct: 161 LASLLLQLLAL--ATPLFSQIVIDKVLPDASRSTLTVLAIG-----------LLLAALFE 207
Query: 172 LISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLII--TTLYHLISKVF----- 224
+ ++ R+ + + L L F LPL ++ +IS+V
Sbjct: 208 ALLRLLRTYLIAH----LGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVRELEQI 263
Query: 225 RSVYLRSVFQNMWSMLFAFLMICFVF---PWFALPLLIITTLYHLISKVFRIAVRELKRM 281
R S+ + +LFA + + +F L +L L LI+ +F+ +R R
Sbjct: 264 REFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRK 323
Query: 282 ENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLF------------- 328
+ S + T+ G+ + E F ++ + + F
Sbjct: 324 LIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIK 383
Query: 329 -----LCSMAMRWLAVRIDVLAVIAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQ 383
L S+ + W + V+ + G VAF+ A + +
Sbjct: 384 SLLQQLSSVLILWFGAIL----VLEGELTLGQLVAFN------------MLAGYFISPIT 427
Query: 384 FTVRVFVETELNFLAVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVS 443
+++ + + +A+ER+ + E K + QG I+F+NVS
Sbjct: 428 RLSQLWTDFQQAKVALERLGDILD---------TPPEQEGDKTLIHLPKLQGEIEFENVS 478
Query: 444 LRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA 503
RY + P VL ++S I GE + IVGR+G+GKS+LL L L + G+I +D D+
Sbjct: 479 FRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLN 538
Query: 504 SVELETLRSRLSVIPQDPVLFNGIV 528
++L +LR ++ + QDP LF+G +
Sbjct: 539 DIDLASLRRQVGYVLQDPFLFSGSI 563
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 109 bits (275), Expect = 4e-27
Identities = 60/181 (33%), Positives = 91/181 (50%), Gaps = 34/181 (18%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
IVG TGAGK++L+ L R + GQI ID DI + ++LRS + V+ QD LF+GTI
Sbjct: 34 IVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTI 93
Query: 587 RYNLDPFGR--CHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLAR 642
N+ GR D E+ +A +++ ++ + + D+ + G LS GE+QLL +AR
Sbjct: 94 MENIR-LGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIAR 152
Query: 643 ALLR---------------------------KTKKKKKSGVNITRPVT--SCDKVLVMDN 673
A+LR K K + S + R T + DK+LV+D+
Sbjct: 153 AMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDD 212
Query: 674 G 674
G
Sbjct: 213 G 213
Score = 108 bits (273), Expect = 8e-27
Identities = 40/92 (43%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Query: 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
G I+F+NV+ Y + P VL +++F I GE + IVG TGAGK++L+ L R + GQ
Sbjct: 1 GEIEFENVNFSYDEKKP-VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQ 59
Query: 495 IKIDDFDIASVELETLRSRLSVIPQDPVLFNG 526
I ID DI + ++LRS + V+ QD LF+G
Sbjct: 60 ILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG 91
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 106 bits (266), Expect = 1e-25
Identities = 57/126 (45%), Positives = 77/126 (61%), Gaps = 3/126 (2%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
G++GRTG+GKS+LL A RL+ + G I+ID SV L+ R VIPQ +F+GT
Sbjct: 34 GLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGT 92
Query: 586 IRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQ--GDQLSLGEKQLLCLARA 643
R NLDP+G+ D E+W E+ LKS + +LD + G LS G KQL+CLAR+
Sbjct: 93 FRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARS 152
Query: 644 LLRKTK 649
+L K K
Sbjct: 153 VLSKAK 158
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 101 bits (254), Expect = 3e-24
Identities = 40/103 (38%), Positives = 62/103 (60%), Gaps = 6/103 (5%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++FKNV+ RY + P VL ++S I GE + +VG +G+GKS+L+ + R ++ SG+I
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFNGIV------GRTGA 533
ID D+ L +LR ++ ++ QD LFN V GR GA
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGA 103
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 96.9 bits (242), Expect = 8e-23
Identities = 38/92 (41%), Positives = 53/92 (57%)
Query: 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
G I+F+NVS Y + L NVS I GE + I+GR G+GKS+LL L L + +SG
Sbjct: 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 495 IKIDDFDIASVELETLRSRLSVIPQDPVLFNG 526
+ +D DI ++ LR + +PQD LF G
Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYG 92
Score = 91.1 bits (227), Expect = 9e-21
Identities = 45/127 (35%), Positives = 67/127 (52%), Gaps = 7/127 (5%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
I+GR G+GKS+LL L L + +SG + +D DI ++ LR + +PQD LF GT
Sbjct: 34 AIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGT 93
Query: 586 IRYNL---DPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCL 640
+R N+ P D + A E + + V + LD + +G LS G++Q + L
Sbjct: 94 LRDNITLGAPLAD--DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVAL 151
Query: 641 ARALLRK 647
ARALL
Sbjct: 152 ARALLND 158
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 101 bits (254), Expect = 3e-22
Identities = 43/116 (37%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 433 RQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS 492
QG I+F+NVS Y L NVS I GE + I+GR G+GKS+LL L L + +
Sbjct: 460 LQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTE 519
Query: 493 GQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG------IVGRTGAGKSSLLVAL 542
G + +D DI ++ LR + +PQDP LF G +G A +L A
Sbjct: 520 GSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAA 575
Score = 92.6 bits (231), Expect = 2e-19
Identities = 47/126 (37%), Positives = 69/126 (54%), Gaps = 5/126 (3%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
I+GR G+GKS+LL L L + + G + +D DI ++ LR + +PQDP LF GT
Sbjct: 495 AIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGT 554
Query: 586 IRYNLDPFGRCH--DTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLA 641
+R N+ G + D E+ A E + + V LD + +G LS G++Q + LA
Sbjct: 555 LRDNIA-LGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALA 613
Query: 642 RALLRK 647
RALLR
Sbjct: 614 RALLRD 619
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 93.4 bits (233), Expect = 2e-21
Identities = 48/127 (37%), Positives = 82/127 (64%), Gaps = 5/127 (3%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
+VG +G GKS+++ L R + +SG+I +D DI + L LRS++ ++ Q+PVLF+GTI
Sbjct: 34 LVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTI 93
Query: 587 RYNLDPFGR--CHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLAR 642
N+ +G+ D E+ +A +K+++ ++++ D+ V +G QLS G+KQ + +AR
Sbjct: 94 AENIR-YGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIAR 152
Query: 643 ALLRKTK 649
ALLR K
Sbjct: 153 ALLRNPK 159
Score = 84.5 bits (210), Expect = 2e-18
Identities = 38/92 (41%), Positives = 60/92 (65%), Gaps = 3/92 (3%)
Query: 437 IKFKNVSLRY--RDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
I+FKNVS RY R + P +L +S I G+ + +VG +G GKS+++ L R + +SG+
Sbjct: 1 IEFKNVSFRYPSRPDVP-ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE 59
Query: 495 IKIDDFDIASVELETLRSRLSVIPQDPVLFNG 526
I +D DI + L LRS++ ++ Q+PVLF+G
Sbjct: 60 ILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDG 91
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 93.3 bits (232), Expect = 2e-21
Identities = 36/92 (39%), Positives = 59/92 (64%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I F++V RY+ + P++L N+S RI GE +GIVGR+G+GKS+L + R +G++
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFNGIV 528
+D D+A + LR ++ V+ Q+ VLFN +
Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNRSI 92
Score = 77.5 bits (191), Expect = 5e-16
Identities = 46/152 (30%), Positives = 73/152 (48%), Gaps = 25/152 (16%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
GIVGR+G+GKS+L + R +G++ +D D+A + LR ++ V+ Q+ VLFN +
Sbjct: 32 GIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRS 91
Query: 586 IRYNL---DPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCL 640
IR N+ DP L +H + + D+ V QG LS G++Q + +
Sbjct: 92 IRDNIALADPGMSMERVIEAAKLAGAH--DFISELPEGYDTIVGEQGAGLSGGQRQRIAI 149
Query: 641 ARALLRKTKKKKKSGVNITRPVTSCDKVLVMD 672
ARAL I P ++L+ D
Sbjct: 150 ARAL-------------IHNP-----RILIFD 163
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 94.7 bits (236), Expect = 2e-20
Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 20/161 (12%)
Query: 501 DIASVELETLRSRLSVIPQDPVLFNG------------IVGRTGAGKSSLLVALFRLVEL 548
++EL L + P P + +G I+G +G+GKS+LL L L++
Sbjct: 331 GKPTLELRDLSAGY---PGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDP 387
Query: 549 SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGR--CHDTELWDALE 606
G++ +D ++S++ + +R R+SV QD LF+ T+R NL R D ELW ALE
Sbjct: 388 LQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLR-LARPDATDEELWAALE 446
Query: 607 KSHLKSKVVTMRSKLDSDVQGD--QLSLGEKQLLCLARALL 645
+ L + + LD+ + +LS GE+Q L LARALL
Sbjct: 447 RVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALL 487
Score = 82.0 bits (203), Expect = 3e-16
Identities = 70/341 (20%), Positives = 130/341 (38%), Gaps = 42/341 (12%)
Query: 227 VYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLIS-----KVFRIAVRELKRM 281
+Y+R + +++ + + ++P +I L++ V A R ++
Sbjct: 126 LYVRVIVPAGVALVVGAAAVAAIA-VLSVPAALILAAGLLLAGFVAPLVSLRAARAAEQA 184
Query: 282 ENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVR- 340
R + + ++ + G + + + E + T A A+
Sbjct: 185 LARLRGELAAQLTDALDGAAELVASGALPAALAQVEEA--DRELTRAERRAA-AATALGA 241
Query: 341 -IDVLA---VIAMAIITGLTVAFHGSVSPA------LAGLALTYA-SHVTGLLQFTVRVF 389
+ +LA + A+ G G ++P L LA A + + Q RV
Sbjct: 242 ALTLLAAGLAVLGALWAGGPAVADGRLAPVTLAVLVLLPLAAFEAFAALPAAAQQLTRVR 301
Query: 390 VETELNFLAVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDN 449
A ERI +++ P T++ +++S Y
Sbjct: 302 A-------AAERIV----EVLDAAGPVAEGSAPAAGAVGLGKP---TLELRDLSAGYPGA 347
Query: 450 WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET 509
P VL VS + GE + I+G +G+GKS+LL L L++ G++ +D ++S++ +
Sbjct: 348 -PPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDE 406
Query: 510 LRSRLSVIPQDPVLF------NGIVGRTGAGKSSLLVALFR 544
+R R+SV QD LF N + R A L AL R
Sbjct: 407 VRRRVSVCAQDAHLFDTTVRENLRLARPDATDEELWAALER 447
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 90.5 bits (225), Expect = 6e-19
Identities = 55/181 (30%), Positives = 91/181 (50%), Gaps = 32/181 (17%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
I+GR+G+GKS+LL L + G I ++ +IAS++ + LR +SV+ Q LF+GT+
Sbjct: 369 ILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTL 428
Query: 587 RYNLD-PFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQ--GDQLSLGEKQLLCLARA 643
R NL D ELW AL++ L+ + + L++ + G +LS GE++ L LARA
Sbjct: 429 RDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARA 488
Query: 644 LLRKT--------------------------KKKKKSGVNIT---RPVTSCDKVLVMDNG 674
LL + K+ + +T R + D+++V+DNG
Sbjct: 489 LLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNG 548
Query: 675 Q 675
+
Sbjct: 549 K 549
Score = 87.8 bits (218), Expect = 4e-18
Identities = 67/317 (21%), Positives = 124/317 (39%), Gaps = 36/317 (11%)
Query: 226 SVYLRSVFQNMWSMLFAFLMICFVFPWFALPL-------LIITTLYHLISKVFRIAVREL 278
++YLR + + L ++ +F++PL L++ L +I +F A R+
Sbjct: 130 NLYLRVIAPAV-VALVLIAVVTIGLSFFSIPLALLLGLILLLLLL--IIPTLFYRAGRKF 186
Query: 279 KRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLA 338
R+ + S + V G + +F E + + +
Sbjct: 187 GAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYR----TALEATEASWLKAQRKQARFT 242
Query: 339 VRIDVLA-VIAMAIITGLTVAF-----HGSVSPALAGLALTYASHVTGLLQFT---VRVF 389
D + +IA ++ GL + G+++ A LAL L F F
Sbjct: 243 GLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVI--FAALEAFEPLAPGAF 300
Query: 390 VETELNFLAVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDN 449
+ R+N+ + + + +T Q ++ +NVS Y
Sbjct: 301 QHLGQVIASARRLND-----ILDQKPEVTFPDEQTATT------GQALELRNVSFTYPGQ 349
Query: 450 WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET 509
L N + + GE + I+GR+G+GKS+LL L + G I ++ +IAS++ +
Sbjct: 350 QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQA 409
Query: 510 LRSRLSVIPQDPVLFNG 526
LR +SV+ Q LF+G
Sbjct: 410 LRETISVLTQRVHLFSG 426
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 90.5 bits (225), Expect = 6e-19
Identities = 71/287 (24%), Positives = 133/287 (46%), Gaps = 38/287 (13%)
Query: 258 LIITTLYHLISKVFRIAVRELKRMENVSRSPIFSN------VSSTVSGLHIIHVFHKEQD 311
LI+ + ++S + R + L+R +S+ S T+ G ++ +F +
Sbjct: 158 LIVVVMLPVLSILMRRVSKRLRR---ISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAY 214
Query: 312 FVRRFCEQYDENSTTLFLCSMAMR----WLAVRIDVLAVIAMAIITGLTVAFHGSVSPAL 367
RRF D S +M M + ++A +A+A++ L +A + + +L
Sbjct: 215 ETRRF----DAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVV--LFIALFQAQAGSL 268
Query: 368 AGLALTYASHVTGLLQFTVRVFVETELN------FLAVERINNCSKKLVPEGRGPITSEF 421
A + + +T ++ + T +N A E + + L+ P +
Sbjct: 269 T--AGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESL--FT--LLDS---PPEKDT 319
Query: 422 GQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLL 481
G ++ A +G ++F+NV+ RY L ++S I GE + +VGR+G+GKS+L+
Sbjct: 320 GTRAIERA----RGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLV 375
Query: 482 VALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV 528
+ R E SGQI +D D+A L +LR +++++ QD VLFN +
Sbjct: 376 NLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTI 422
Score = 82.8 bits (205), Expect = 2e-16
Identities = 53/153 (34%), Positives = 82/153 (53%), Gaps = 8/153 (5%)
Query: 499 DFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDF 558
F + L S VI + +VGR+G+GKS+L+ + R E SGQI +D
Sbjct: 337 TFRYPGRDRPALDSISLVIEPGETV--ALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGH 394
Query: 559 DIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHD---TELWDALEKSHLKSKVV 615
D+A L +LR +++++ QD VLFN TI N+ +GR E+ AL ++ + V
Sbjct: 395 DLADYTLASLRRQVALVSQDVVLFNDTIANNI-AYGRTEQADRAEIERALAAAYAQDFVD 453
Query: 616 TMRSKLDSDV--QGDQLSLGEKQLLCLARALLR 646
+ LD+ + G LS G++Q L +ARALL+
Sbjct: 454 KLPLGLDTPIGENGVLLSGGQRQRLAIARALLK 486
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 90.0 bits (224), Expect = 8e-19
Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 5/124 (4%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
IVG TGAGKS+L+ L R+ + SG+I ID DI +V +LR ++V+ QD LFN +I
Sbjct: 366 IVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSI 425
Query: 587 RYNLDPFGR--CHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLAR 642
N+ GR D E+ A E++ + D+ V +G QLS GE+Q L +AR
Sbjct: 426 EDNIR-VGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIAR 484
Query: 643 ALLR 646
ALL+
Sbjct: 485 ALLK 488
Score = 87.7 bits (218), Expect = 4e-18
Identities = 46/117 (39%), Positives = 65/117 (55%), Gaps = 7/117 (5%)
Query: 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493
+G ++F +VS Y DN + +VSF G+ + IVG TGAGKS+L+ L R+ + SG
Sbjct: 332 KGAVEFDDVSFSY-DNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSG 390
Query: 494 QIKIDDFDIASVELETLRSRLSVIPQDPVLFN-GI-----VGRTGAGKSSLLVALFR 544
+I ID DI +V +LR ++V+ QD LFN I VGR A + A R
Sbjct: 391 RILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAER 447
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 83.9 bits (208), Expect = 1e-18
Identities = 46/143 (32%), Positives = 75/143 (52%), Gaps = 6/143 (4%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+ NVS Y + VL N+S + GE I ++GR+G+GKS+LL L ++ G+I
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFNGI----VGRTGAGKSSLLVALFRLVELSSGQ 552
+D ++ +E + L S +SV+ Q P LF+ +GR +G +AL R++ L
Sbjct: 61 LDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRLALARIL-LQDAP 118
Query: 553 IKIDDFDIASVELETLRSRLSVI 575
I + D ++ T R LS+I
Sbjct: 119 IVLLDEPTVGLDPITERQLLSLI 141
Score = 73.9 bits (182), Expect = 3e-15
Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 66/178 (37%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
++GR+G+GKS+LL L ++ G+I +D ++ +E + L S +SV+ Q P LF+ T+
Sbjct: 33 LLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLE-KALSSLISVLNQRPYLFDTTL 91
Query: 587 RYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLR 646
R NL G + S GE+Q L LAR LL+
Sbjct: 92 RNNL------------------------------------GRRFSGGERQRLALARILLQ 115
Query: 647 ----------------KTKK----------KKKSGVNIT---RPVTSCDKVLVMDNGQ 675
T++ K K+ + IT + DK+L ++NG+
Sbjct: 116 DAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGK 173
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 89.2 bits (222), Expect = 1e-18
Identities = 45/126 (35%), Positives = 69/126 (54%), Gaps = 6/126 (4%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
+VG +GAGKS+LL L + + G+I+++ D+ + E R ++S + Q+P LF GT
Sbjct: 351 ALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGT 410
Query: 586 IRYNLDPFGRCHDT--ELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLA 641
IR N+ R + E+ AL+++ L V LD+ + G LS G+ Q L LA
Sbjct: 411 IRENI-LLARPDASDEEIIAALDQAGLLE-FVPKPDGLDTVIGEGGAGLSGGQAQRLALA 468
Query: 642 RALLRK 647
RALL
Sbjct: 469 RALLSP 474
Score = 82.7 bits (205), Expect = 2e-16
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Query: 422 GQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLL 481
G + I +N+S RY D P L++++ I G+ +VG +GAGKS+LL
Sbjct: 306 GSGEKAEVANEPPIEISLENLSFRYPDGKP-ALSDLNLTIKAGQLTALVGASGAGKSTLL 364
Query: 482 VALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG 526
L + + G+I+++ D+ + E R ++S + Q+P LF G
Sbjct: 365 NLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG 409
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 89.0 bits (221), Expect = 2e-18
Identities = 63/239 (26%), Positives = 107/239 (44%), Gaps = 20/239 (8%)
Query: 296 TVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIAMAIIT-- 353
+V+G+ I E F R+ Q F + I+++ + AI+
Sbjct: 323 SVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWF 382
Query: 354 GLTVAFHGSVSP-ALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERIN---NCSKKL 409
G + G++SP L + A VT + +++ + + +A+ER+ N +
Sbjct: 383 GAHLVIGGALSPGQLVAFNM-LAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEP 441
Query: 410 VPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGI 469
G A +G I F+N+ RY + P VL+N++ I GE IGI
Sbjct: 442 RSAGL-------------AALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGI 488
Query: 470 VGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV 528
VG +G+GKS+L L RL GQ+ +D D+A + LR ++ V+ Q+ VLF+ +
Sbjct: 489 VGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSI 547
Score = 62.5 bits (152), Expect = 4e-10
Identities = 43/131 (32%), Positives = 70/131 (53%), Gaps = 15/131 (11%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 583
F GIVG +G+GKS+L L RL GQ+ +D D+A + LR ++ V+ Q+ VLF+
Sbjct: 485 FIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFS 544
Query: 584 GTIRYNLD------PFGRC-HDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGE 634
+IR N+ PF H +L A + + + +++V +G LS G+
Sbjct: 545 RSIRDNIALCNPGAPFEHVIHAAKLAGAHD------FISELPQGYNTEVGEKGANLSGGQ 598
Query: 635 KQLLCLARALL 645
+Q + +ARAL+
Sbjct: 599 RQRIAIARALV 609
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 84.1 bits (208), Expect = 3e-18
Identities = 56/219 (25%), Positives = 96/219 (43%), Gaps = 64/219 (29%)
Query: 434 QGTIKFKNVSLRYRDNWP--LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS 491
+G +KF+NV+ Y P LVL +VSF L
Sbjct: 9 KGIVKFQNVTFAYP-TRPDTLVLQDVSF-----------------------------TLH 38
Query: 492 SGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSG 551
G++ +VG +G+GKS+++ L + G
Sbjct: 39 PGEV-----------------------------TALVGPSGSGKSTVVALLENFYQPQGG 69
Query: 552 QIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLD-PFGRCHDTELWDALEKSHL 610
Q+ +D I+ E + L S++S++ Q+PVLF +++ N+ C + +A +K+H
Sbjct: 70 QVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHA 129
Query: 611 KSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRK 647
S + + S D++V +G QLS G+KQ + +ARAL+R
Sbjct: 130 HSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 82.6 bits (205), Expect = 1e-17
Identities = 44/120 (36%), Positives = 63/120 (52%), Gaps = 13/120 (10%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+ +N+S Y + L +VS IN GE + ++G +GAGKS+LL L LVE +SG +
Sbjct: 1 IEVENLSKTYPNGKK-ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL 59
Query: 497 IDDFDIASV---ELETLRSRLSVIPQDP-------VLFNGIVGRTGAGKSSLLVALFRLV 546
ID DI + L LR ++ +I Q VL N + GR G+ S +LF L
Sbjct: 60 IDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGR--LGRRSTWRSLFGLF 117
Score = 59.9 bits (146), Expect = 5e-10
Identities = 46/145 (31%), Positives = 65/145 (44%), Gaps = 28/145 (19%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELETLRSRLSVIPQDP- 579
F ++G +GAGKS+LL L LVE +SG + ID DI + L LR ++ +I Q
Sbjct: 29 FVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFN 88
Query: 580 ------VLFN---------GTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSD 624
VL N T R F + ALE+ L K
Sbjct: 89 LIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR------- 141
Query: 625 VQGDQLSLGEKQLLCLARALLRKTK 649
DQLS G++Q + +ARAL+++ K
Sbjct: 142 --ADQLSGGQQQRVAIARALMQQPK 164
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 80.0 bits (198), Expect = 1e-17
Identities = 35/82 (42%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 438 KFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKI 497
+ +N+S RY L NVS + GE + +VG G+GKS+LL A+ L++ +SG+I I
Sbjct: 1 EIENLSFRYGGR--TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILI 58
Query: 498 DDFDIASVELETLRSRLSVIPQ 519
D DIA + LE LR R+ +PQ
Sbjct: 59 DGKDIAKLPLEELRRRIGYVPQ 80
Score = 65.3 bits (160), Expect = 2e-12
Identities = 35/126 (27%), Positives = 49/126 (38%), Gaps = 52/126 (41%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 583
+VG G+GKS+LL A+ L++ +SG+I ID DIA + LE LR R+ +P
Sbjct: 27 IVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVP------- 79
Query: 584 GTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARA 643
QLS G++Q + LARA
Sbjct: 80 ---------------------------------------------QLSGGQRQRVALARA 94
Query: 644 LLRKTK 649
LL
Sbjct: 95 LLLNPD 100
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 85.9 bits (213), Expect = 1e-17
Identities = 50/126 (39%), Positives = 76/126 (60%), Gaps = 5/126 (3%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
IVG +GAGKS++L LFR +++SG I ID DI V ++LR + ++PQD VLFN T
Sbjct: 293 AIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDT 352
Query: 586 IRYNLDPFGR--CHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLA 641
I YN+ +GR E+ A E + + + ++ D+ V +G +LS GEKQ + +A
Sbjct: 353 IAYNIK-YGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIA 411
Query: 642 RALLRK 647
R +L+
Sbjct: 412 RTILKN 417
Score = 79.3 bits (196), Expect = 2e-15
Identities = 42/93 (45%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 433 RQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS 492
R G + F NVS Y P +L +SF I G+ + IVG +GAGKS++L LFR +++S
Sbjct: 259 RLGAVAFINVSFAYDPRRP-ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNS 317
Query: 493 GQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 525
G I ID DI V ++LR + ++PQD VLFN
Sbjct: 318 GSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFN 350
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 82.3 bits (204), Expect = 2e-17
Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 11/106 (10%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+ KN+S Y L +V+ IN GE + I+G +GAGKS+LL +L LV+ +SG+I
Sbjct: 4 IEVKNLSKTYPGGHQ-ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEIL 62
Query: 497 IDDFDIA---SVELETLRSRLSVIPQDP-------VLFNGIVGRTG 532
+ I EL LR + +I Q VL N ++GR G
Sbjct: 63 FNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLG 108
Score = 56.1 bits (136), Expect = 1e-08
Identities = 42/150 (28%), Positives = 62/150 (41%), Gaps = 38/150 (25%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA---SVELETLRSRLSVIPQDPV 580
I+G +GAGKS+LL +L LV+ +SG+I + I EL LR + +I Q
Sbjct: 32 MVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFN 91
Query: 581 LFNGTIRYNLDPF-----GRCHDTELW----------------DALEKSHLKSKVVTMRS 619
L L GR T W DALE+ + K
Sbjct: 92 LVP-----RLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ--- 143
Query: 620 KLDSDVQGDQLSLGEKQLLCLARALLRKTK 649
+ LS G++Q + +ARAL+++ K
Sbjct: 144 ------RASTLSGGQQQRVAIARALVQQPK 167
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 79.6 bits (197), Expect = 3e-17
Identities = 35/90 (38%), Positives = 56/90 (62%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ +NVS RY P VL NVSF I GE++ I+G +G+GKS+L + L+ +SG+++
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFNG 526
+D DI+ + L + +PQD LF+G
Sbjct: 61 LDGADISQWDPNELGDHVGYLPQDDELFSG 90
Score = 70.3 bits (173), Expect = 4e-14
Identities = 46/209 (22%), Positives = 77/209 (36%), Gaps = 83/209 (39%)
Query: 512 SRLSVIPQD---PVLFN-----------GIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 557
+S PVL N I+G +G+GKS+L + L+ +SG++++D
Sbjct: 4 ENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDG 63
Query: 558 FDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTM 617
DI+ + L + +PQD LF+G+I N+
Sbjct: 64 ADISQWDPNELGDHVGYLPQDDELFSGSIAENI--------------------------- 96
Query: 618 RSKLDSDVQGDQLSLGEKQLLCLARAL---------------------------LRKTKK 650
LS G++Q L LARAL + K
Sbjct: 97 ------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKA 144
Query: 651 KKKSGVNIT-RP--VTSCDKVLVMDNGQA 676
+ + I RP + S D++LV+++G+
Sbjct: 145 AGATRIVIAHRPETLASADRILVLEDGRV 173
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 79.4 bits (197), Expect = 4e-17
Identities = 32/80 (40%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 440 KNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 499
+N+S+ Y VL ++S I GE +GI+G GAGKS+LL L L++ SSG+I +D
Sbjct: 3 ENLSVGYGGRT--VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDG 60
Query: 500 FDIASVELETLRSRLSVIPQ 519
D+AS+ + L +++ +PQ
Sbjct: 61 KDLASLSPKELARKIAYVPQ 80
Score = 65.5 bits (161), Expect = 3e-12
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 41/129 (31%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 583
GI+G GAGKS+LL L L++ SSG+I +D D+AS+ + L +++ +PQ
Sbjct: 27 IVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ------ 80
Query: 584 GTIRYNLDPFGRCHDTELWDALEK---SHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCL 640
ALE +HL + +LS GE+Q + L
Sbjct: 81 --------------------ALELLGLAHLADRPFN------------ELSGGERQRVLL 108
Query: 641 ARALLRKTK 649
ARAL ++
Sbjct: 109 ARALAQEPP 117
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 84.4 bits (209), Expect = 5e-17
Identities = 77/310 (24%), Positives = 129/310 (41%), Gaps = 23/310 (7%)
Query: 226 SVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVS 285
S+ LR N + +M+ P +L+ L L +F VR+L R
Sbjct: 137 SMALR----NALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDR 192
Query: 286 RSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLA 345
+ S T+ + + F E RF ++ +R A+ ++
Sbjct: 193 IADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEA---ARQRIRTRALLTAIVI 249
Query: 346 VIAMAIITGLTVA-----FHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVE 400
V+ I G+ G +S G + YA V G + V+ E + A E
Sbjct: 250 VLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAE 309
Query: 401 RINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRY--RDNWPLVLANVS 458
R+ + P+ + P K P +G I+F+ V+ Y R + P L ++
Sbjct: 310 RLIELLQA-EPDIKAPAHP-------KTLPVPLRGEIEFEQVNFAYPARPDQP-ALDGLN 360
Query: 459 FRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIP 518
+ GE + +VG +GAGKS+L L R + SG+I +D D+ ++ LR+R++++P
Sbjct: 361 LTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVP 420
Query: 519 QDPVLFNGIV 528
QDPVLF V
Sbjct: 421 QDPVLFAASV 430
Score = 79.0 bits (195), Expect = 2e-15
Identities = 50/182 (27%), Positives = 88/182 (48%), Gaps = 34/182 (18%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
+VG +GAGKS+L L R + SG+I +D D+ ++ LR+R++++PQDPVLF ++
Sbjct: 371 LVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASV 430
Query: 587 RYNLDPFGRCH--DTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLAR 642
N+ +GR D E+ A +H + + D+ + +G LS G++Q + +AR
Sbjct: 431 MENIR-YGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIAR 489
Query: 643 ALLRKTK---------------------------KKKKSGVNITRPVT--SCDKVLVMDN 673
A+L+ K + + + R T D+++VMD
Sbjct: 490 AILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQ 549
Query: 674 GQ 675
G+
Sbjct: 550 GR 551
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 79.9 bits (198), Expect = 7e-17
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 437 IKFKNVSLRYRDN--WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
++ KN+S+ + L +VSF I GE +G+VG +G+GKS+L A+ L++ +SG
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 495 IKIDDFDIASV---ELETLRSRLSVIPQDP 521
I D D+ + + R + ++ QDP
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDP 91
Score = 61.0 bits (149), Expect = 2e-10
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELETLRSRLSVIPQDPVL- 581
G+VG +G+GKS+L A+ L++ +SG I D D+ + + R + ++ QDP+
Sbjct: 35 GLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSS 94
Query: 582 FNG--TIRYNL-DPFGRCH--DTELWDALEKSHLKSKVVTMRSKLDSDVQG---DQLSLG 633
N TI + +P R H ++ E L V L +V +LS G
Sbjct: 95 LNPRMTIGEQIAEPL-RIHGKLSKKEARKEAVLLLLVGV----GLPEEVLNRYPHELSGG 149
Query: 634 EKQLLCLARALLRK 647
++Q + +ARAL
Sbjct: 150 QRQRVAIARALALN 163
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 84.2 bits (209), Expect = 7e-17
Identities = 82/334 (24%), Positives = 139/334 (41%), Gaps = 40/334 (11%)
Query: 220 ISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPW----FALPLLIITTLYHLISKVFRIAV 275
I ++ L ++ ++++L LM F + W A+ L ++ L+ + + V
Sbjct: 245 IRRILSGSTLTTLLSGIFALLNLGLM--FYYSWKLALVAVALALVAIAVTLVLGLLQ--V 300
Query: 276 RELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMR 335
R+ +R+ +S I ++G+ + V E R+ + +
Sbjct: 301 RKERRLLELS-GKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIEN 359
Query: 336 WLAVRIDVLAVIAMAIITGLTVAFHGSVSPALAG-LALTYASHVTGLLQFTVRVFVETEL 394
L V VL V+ A + ++ G +L LA A G V T +
Sbjct: 360 LLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAF---GSFSGAVTQLSNTLI 416
Query: 395 NFLAV----ERINNCSKKLVPEGRGPI---TSEFGQVKV---KLADWPRQGTIKFKNVSL 444
+ LAV ER PI E + K KL G I+ V+
Sbjct: 417 SILAVIPLWERAK------------PILEALPEVDEAKTDPGKL-----SGAIEVDRVTF 459
Query: 445 RYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 504
RYR + PL+L +VS +I GE + IVG +G+GKS+LL L SG + D D+A
Sbjct: 460 RYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAG 519
Query: 505 VELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSL 538
++++ +R +L V+ Q+ L +G + AG + L
Sbjct: 520 LDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPL 553
Score = 53.0 bits (128), Expect = 4e-07
Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 29/180 (16%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 583
F IVG +G+GKS+LL L SG + D D+A ++++ +R +L V+ Q+ L +
Sbjct: 481 FVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMS 540
Query: 584 GTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQ--GDQLSLGEKQLLCLA 641
G+I N+ E W+A + L + M + + + G LS G++Q L +A
Sbjct: 541 GSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIA 600
Query: 642 RALLRKTK-------------------KKKKSGVNITRPVTS--------CDKVLVMDNG 674
RAL+RK + + + +TR V + D++ V+D G
Sbjct: 601 RALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRNADRIYVLDAG 660
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 79.5 bits (197), Expect = 2e-16
Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ +N+S Y +L ++SF I GE GI+G G+GKS+LL L L++ SG++
Sbjct: 3 LEVENLSFGYGGK--PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL 60
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFNGI 527
+D DIAS+ + L +L+ +PQ P G+
Sbjct: 61 LDGKDIASLSPKELAKKLAYVPQSPSAPFGL 91
Score = 73.4 bits (181), Expect = 2e-14
Identities = 43/131 (32%), Positives = 68/131 (51%), Gaps = 7/131 (5%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 583
GI+G G+GKS+LL L L++ SG++ +D DIAS+ + L +L+ +PQ P
Sbjct: 30 ITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPF 89
Query: 584 GTIRYNLDPFGRCHDTELWDALEKSHLKS-----KVVTMRSKLDSDVQGDQLSLGEKQLL 638
G Y L GR L+ K + +++ + D V D+LS GE+Q +
Sbjct: 90 GLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV--DELSGGERQRV 147
Query: 639 CLARALLRKTK 649
+ARAL ++T
Sbjct: 148 LIARALAQETP 158
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 82.6 bits (205), Expect = 2e-16
Identities = 34/95 (35%), Positives = 49/95 (51%)
Query: 432 PRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS 491
Q ++ NVS Y D VL +S +I GE + ++GRTG GKS+LL L R +
Sbjct: 334 ADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ 393
Query: 492 SGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG 526
G+I ++ IA LR +SV+ Q LF+
Sbjct: 394 QGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA 428
Score = 81.0 bits (201), Expect = 6e-16
Identities = 45/125 (36%), Positives = 67/125 (53%), Gaps = 8/125 (6%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
++GRTG GKS+LL L R + G+I ++ IA LR +SV+ Q LF+ T+
Sbjct: 371 LLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATL 430
Query: 587 RYNL---DPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQ--GDQLSLGEKQLLCLA 641
R NL P D L + L++ L K++ L++ + G QLS GE++ L +A
Sbjct: 431 RDNLLLAAP--NASDEALIEVLQQVGL-EKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIA 487
Query: 642 RALLR 646
RALL
Sbjct: 488 RALLH 492
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 82.3 bits (204), Expect = 2e-16
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Query: 429 ADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV 488
+++F VS+ Y P L VSF + GE + +VG +GAGKS+LL L V
Sbjct: 314 VTAAPAPSLEFSGVSVAYPGRRP-ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV 372
Query: 489 ELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV 528
+ + G I ++ +A + ++ R +++ +PQ P LF G +
Sbjct: 373 DPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTI 412
Score = 80.8 bits (200), Expect = 6e-16
Identities = 46/125 (36%), Positives = 70/125 (56%), Gaps = 5/125 (4%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
+VG +GAGKS+LL L V+ + G I ++ +A + ++ R +++ +PQ P LF GT
Sbjct: 352 ALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGT 411
Query: 586 IRYNLDPFGR--CHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLA 641
I N+ R D E+ +ALE++ L V + LD+ + G LS G+ Q L LA
Sbjct: 412 IAENIR-LARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALA 470
Query: 642 RALLR 646
RA LR
Sbjct: 471 RAFLR 475
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 82.2 bits (204), Expect = 2e-16
Identities = 55/185 (29%), Positives = 92/185 (49%), Gaps = 41/185 (22%)
Query: 527 IVGRTGAGKSSLLVALFRLVELS-SGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
+VG +GAGK+SLL AL L L G +KI+ ++ ++ E+ R LS + Q+P L +GT
Sbjct: 381 LVGPSGAGKTSLLNAL--LGFLPYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGT 438
Query: 586 IRYNL---DPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQ---LSLGEKQLLC 639
+R N+ +P D +L ALE + + + + LD+ + GDQ LS+G+ Q L
Sbjct: 439 LRDNVLLGNP--DASDEQLQQALENAWVSEFLPLLPQGLDTPI-GDQAAGLSVGQAQRLA 495
Query: 640 LARALLRKTK--------------------------KKKKSGVNITR---PVTSCDKVLV 670
LARALL+ + ++++ + +T + D++ V
Sbjct: 496 LARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWV 555
Query: 671 MDNGQ 675
M +GQ
Sbjct: 556 MQDGQ 560
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 78.1 bits (193), Expect = 3e-16
Identities = 61/217 (28%), Positives = 93/217 (42%), Gaps = 57/217 (26%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ +N+S Y + L N++ IN GE + I+G +GAGKS+LL + RLVE SSG I
Sbjct: 2 LEVENLSKVYPNG-KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL 60
Query: 497 IDDFDIASV---ELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQI 553
++ DI + +L LR R+ +I Q +N ++ R
Sbjct: 61 LEGTDITKLRGKKLRKLRRRIGMIFQH---YN-LIERL---------------------- 94
Query: 554 KIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTEL-WDALEKSHLKS 612
+V L RL + T R L F D E ALE+ L
Sbjct: 95 --------TVLENVLHGRLG--------YKPTWRSLLGRFSE-EDKERALSALERVGLAD 137
Query: 613 KVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTK 649
K + + DQLS G++Q + +ARAL ++
Sbjct: 138 K---------AYQRADQLSGGQQQRVAIARALAQQPD 165
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional.
Length = 1466
Score = 82.4 bits (203), Expect = 4e-16
Identities = 65/227 (28%), Positives = 119/227 (52%), Gaps = 22/227 (9%)
Query: 434 QGTIKFKNVSLRY--RDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS 491
+G I+ +V+ RY R N P + +++F + + IVG TG+GKS+++ L R +L
Sbjct: 1163 KGKIEIMDVNFRYISRPNVP-IYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLK 1221
Query: 492 SGQIKIDDF----DIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVE 547
+ + D+ + + +V ++ F+ + G+G+ S +F+
Sbjct: 1222 NDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFS-LTKEGGSGEDS---TVFK--- 1274
Query: 548 LSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWD---A 604
+SG+I +D DI L+ LR+ S++ Q+P+LFN +I N+ FG+ D D A
Sbjct: 1275 -NSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIK-FGK-EDATREDVKRA 1331
Query: 605 LEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTK 649
+ + + + ++ +K D++V G LS G+KQ + +ARALLR+ K
Sbjct: 1332 CKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPK 1378
Score = 68.1 bits (166), Expect = 1e-11
Identities = 59/228 (25%), Positives = 104/228 (45%), Gaps = 26/228 (11%)
Query: 437 IKFKNVSLRYRDNWPL-VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
I+FKNV Y + + +++F + G+ VG +G GKS++L + RL + + G I
Sbjct: 383 IQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDI 442
Query: 496 KIDD-FDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELS--SGQ 552
I+D ++ + L+ RS++ V+ QDP+LF+ + K+++ +L+ L +L S
Sbjct: 443 IINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSI------KNNIKYSLYSLKDLEALSNY 496
Query: 553 IKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCH---------DTELWD 603
D D E R S + N D D+E+ D
Sbjct: 497 YNEDGND----SQENKNKRNSCRAKCAGDLNDMSN-TTDSNELIEMRKNYQTIKDSEVVD 551
Query: 604 ALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTK 649
+K + V + K ++ V +LS G+KQ + +ARA++R K
Sbjct: 552 VSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPK 599
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 80.5 bits (199), Expect = 9e-16
Identities = 52/160 (32%), Positives = 87/160 (54%), Gaps = 7/160 (4%)
Query: 490 LSSGQIKIDDFDIASVELETLRSRLSV-IPQDPVLFNGIVGRTGAGKSSLLVALFRLVEL 548
L SG+I ID+ A + + +++ +P F +VG TG+GKS+L L L
Sbjct: 336 LQSGRIDIDNVSFAYRDDNLVLQNINLSVP--SRGFVALVGHTGSGKSTLASLLMGYYPL 393
Query: 549 SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGR-CHDTELWDALEK 607
+ G+I++D ++S+ LR ++++ QDPV+ T N+ GR + ++W ALE
Sbjct: 394 TEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANV-TLGRDISEEQVWQALET 452
Query: 608 SHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALL 645
L ++ L + + QG+ LS+G+KQLL LAR L+
Sbjct: 453 VQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLV 492
Score = 57.0 bits (138), Expect = 2e-08
Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 12/107 (11%)
Query: 428 LADWPRQ-----------GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAG 476
L D PRQ G I NVS YRD+ VL N++ + + +VG TG+G
Sbjct: 321 LMDGPRQQYGNDDRPLQSGRIDIDNVSFAYRDDNL-VLQNINLSVPSRGFVALVGHTGSG 379
Query: 477 KSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL 523
KS+L L L+ G+I++D ++S+ LR ++++ QDPV+
Sbjct: 380 KSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVV 426
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 76.0 bits (188), Expect = 1e-15
Identities = 57/277 (20%), Positives = 101/277 (36%), Gaps = 105/277 (37%)
Query: 438 KFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKI 497
+ KN+S Y D L ++S I GE + IVG G+GKS+L
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTL----------------- 43
Query: 498 DDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 557
LR L NG++G T SG++ +D
Sbjct: 44 ------------LR-----------LLNGLLGPT------------------SGEVLVDG 62
Query: 558 FDIASVELETLRSRLSVIPQDP--VLFNGTIR----YNLDPFGRCHDTELWDALEKSHLK 611
D+ + L+ LR ++ ++ Q+P F T+ + L+ G + + E+
Sbjct: 63 KDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEE----EIEERVEEA 118
Query: 612 SKVVTMRSKLDSDVQGDQLSLGEKQLLCLA---------------------------RAL 644
++V + D LS G+KQ + +A L
Sbjct: 119 LELVGLEGLRDRSPF--TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLEL 176
Query: 645 LRKTKKKKKSGVNIT------RPVTSCDKVLVMDNGQ 675
L+K K + K+ + +T + D+V+V+++G+
Sbjct: 177 LKKLKAEGKTIIIVTHDLDLLLEL--ADRVIVLEDGK 211
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 74.0 bits (183), Expect = 2e-15
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+ +N+S RY L ++S + GE G++G GAGK++L+ + L++ SG+IK
Sbjct: 1 IEVRNLSKRYGKKT--ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK 58
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLF 524
+ DI E E ++ R+ +P++P L+
Sbjct: 59 VLGKDIKK-EPEEVKRRIGYLPEEPSLY 85
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 76.2 bits (188), Expect = 3e-15
Identities = 72/283 (25%), Positives = 107/283 (37%), Gaps = 107/283 (37%)
Query: 433 RQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSS---LLVALFRLVE 489
+ IK +NVS Y ++ L NVSF IN GE + I+G G+GKS+ +L L +
Sbjct: 4 KSVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--- 60
Query: 490 LSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELS 549
SG+IKID I+ L+ +R ++ +I Q+P N +G T VE
Sbjct: 61 PQSGEIKIDGITISKENLKEIRKKIGIIFQNPD--NQFIGAT--------------VE-- 102
Query: 550 SGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG---RCHD-TELWDAL 605
D DIA FG + ++ D +
Sbjct: 103 ------D--DIA-------------------------------FGLENKKVPPKKMKDII 123
Query: 606 EKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARAL--------------------- 644
+ +K V M LD + Q LS G+KQ + +A L
Sbjct: 124 DDL---AKKVGMEDYLDKEPQ--NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGK 178
Query: 645 ---------LRKTKKKKKSGVNITR---PVTSCDKVLVMDNGQ 675
LR K +KK+ ++IT DKV+V G+
Sbjct: 179 REIKKIMVDLR--KTRKKTLISITHDMDEAILADKVIVFSEGK 219
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 76.2 bits (188), Expect = 3e-15
Identities = 50/186 (26%), Positives = 86/186 (46%), Gaps = 42/186 (22%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG- 584
G++G GAGK++LL L L++ +SG+I + +D+ E +R R+ +PQ+P L+
Sbjct: 35 GLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVK-EPAKVRRRIGYVPQEPSLYPEL 93
Query: 585 TIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARAL 644
T+R NL+ F R + +A E+ ++ + K + V LS G KQ L +A AL
Sbjct: 94 TVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKV--RTLSGGMKQRLSIALAL 151
Query: 645 LRK-------------------------TKKKKKSGVNITRPVTS----------CDKVL 669
L + K+ GV I + S CD+V+
Sbjct: 152 LHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTI---LLSTHILEEAEELCDRVI 208
Query: 670 VMDNGQ 675
++++G+
Sbjct: 209 ILNDGK 214
Score = 74.3 bits (183), Expect = 2e-14
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
I+ +N++ +Y + L VSF + GE G++G GAGK++LL L L++ +SG+I
Sbjct: 4 VIEVRNLTKKYGGDKT-ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 496 KIDDFDIASVELETLRSRLSVIPQDPVLF 524
+ +D+ E +R R+ +PQ+P L+
Sbjct: 63 LVLGYDVVK-EPAKVRRRIGYVPQEPSLY 90
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 76.5 bits (189), Expect = 5e-15
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 437 IKFKNVSLRYRDN---WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493
I+ +NVS + L +VS I GE GI+G +GAGKS+LL + L +SG
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 494 QIKIDDFDIASV---ELETLRSRLSVIPQDPVLFN 525
+ +D D+ ++ EL LR ++ +I Q L +
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLS 96
Score = 58.4 bits (142), Expect = 4e-09
Identities = 43/130 (33%), Positives = 67/130 (51%), Gaps = 20/130 (15%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELETLRSRLSVIPQDPVLF 582
GI+G +GAGKS+LL + L +SG + +D D+ ++ EL LR ++ +I Q L
Sbjct: 36 GIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLL 95
Query: 583 NG-TIRYNLD-PFGRCHDTELWDALEKSHLKSKV------VTMRSKLDSDVQGDQLSLGE 634
+ T+ N+ P EL + K+ +K +V V + K D QLS G+
Sbjct: 96 SSRTVFENVAFPL------ELA-GVPKAEIKQRVAELLELVGLSDKADR--YPAQLSGGQ 146
Query: 635 KQLLCLARAL 644
KQ + +ARAL
Sbjct: 147 KQRVAIARAL 156
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 77.2 bits (190), Expect = 1e-14
Identities = 48/124 (38%), Positives = 77/124 (62%), Gaps = 5/124 (4%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
IVG TGAGK++L+ L R+ + + GQI ID DI +V E+LR ++ + QD LFN +I
Sbjct: 366 IVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSI 425
Query: 587 RYNLDPFGR--CHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLAR 642
R N+ GR D E+++A + + ++ + D+ V +G++LS GE+Q L +AR
Sbjct: 426 RENIR-LGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIAR 484
Query: 643 ALLR 646
A+L+
Sbjct: 485 AILK 488
Score = 73.4 bits (180), Expect = 2e-13
Identities = 39/113 (34%), Positives = 64/113 (56%), Gaps = 7/113 (6%)
Query: 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
G ++F++++ + ++ V +VSF G+ + IVG TGAGK++L+ L R+ + + GQ
Sbjct: 333 GAVEFRHITFEFANSSQGVF-DVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQ 391
Query: 495 IKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV------GRTGAGKSSLLVA 541
I ID DI +V E+LR ++ + QD LFN + GR GA + A
Sbjct: 392 ILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEA 444
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 70.0 bits (172), Expect = 2e-14
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 12/118 (10%)
Query: 536 SSLLVALFRLVELSSGQIKIDDFDIASVE-LETLRSRLSVIPQDPVLF-NGTIRYNLDPF 593
S+LL + L++ +SG I +D D + + LR R+ V+ QDP LF T+R NL
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 594 GRCHDT--ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTK 649
R + +ALE+ L + LS G+KQ + +ARALL+K K
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREP--------VGTLSGGQKQRVAIARALLKKPK 110
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 72.6 bits (179), Expect = 2e-14
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+F+NVS Y L +VSF I GE + + G +GAGKS+LL ++ + G+I
Sbjct: 2 IRFENVSKAYP-GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKIL 60
Query: 497 IDDFDIASV---ELETLRSRLSVIPQD 520
++ D++ + E+ LR ++ V+ QD
Sbjct: 61 VNGHDLSRLKGREIPFLRRQIGVVFQD 87
Score = 56.1 bits (136), Expect = 9e-09
Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 20/129 (15%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELETLRSRLSVIPQD-PVLF 582
+ G +GAGKS+LL ++ + G+I ++ D++ + E+ LR ++ V+ QD +L
Sbjct: 33 LTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLP 92
Query: 583 NGTIRYN----LDPFGRCHDT---ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEK 635
+ T+ N L G+ + + L+ LK K QLS GE+
Sbjct: 93 DRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKA---------RALPSQLSGGEQ 143
Query: 636 QLLCLARAL 644
Q + +ARA+
Sbjct: 144 QRVAIARAI 152
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 70.3 bits (173), Expect = 5e-14
Identities = 37/91 (40%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ KNVS RY VL +VS I GE + ++G +G+GKS+LL + L E SG I
Sbjct: 1 LELKNVSKRYGQK--TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL 58
Query: 497 IDDFDIASVELET--LRSRLSVIPQDPVLFN 525
ID D+ +E E LR R+ ++ QD LF
Sbjct: 59 IDGEDLTDLEDELPPLRRRIGMVFQDFALFP 89
Score = 54.1 bits (131), Expect = 2e-08
Identities = 43/185 (23%), Positives = 71/185 (38%), Gaps = 71/185 (38%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET--LRSRLSVIPQDPVLFN 583
++G +G+GKS+LL + L E SG I ID D+ +E E LR R+ ++ QD LF
Sbjct: 30 ALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFP 89
Query: 584 G-TIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLAR 642
T+ N + + LS G++Q + LAR
Sbjct: 90 HLTVLEN-------------------------IALG-----------LSGGQQQRVALAR 113
Query: 643 AL-----------------------LRKTKKKKKSGVNITRPVTS---------CDKVLV 670
AL +R K ++ + IT + + D+V+V
Sbjct: 114 ALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVV 173
Query: 671 MDNGQ 675
+ +G+
Sbjct: 174 LRDGK 178
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 71.4 bits (175), Expect = 6e-14
Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+FK VS Y +L ++S + G IVG +GAGKS+L+ + RL++ + G I
Sbjct: 4 IEFKEVS--YSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSIL 61
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFNGIV 528
ID DI ++++ LR ++ ++ Q P LF G V
Sbjct: 62 IDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTV 93
Score = 65.6 bits (160), Expect = 7e-12
Identities = 40/127 (31%), Positives = 65/127 (51%), Gaps = 23/127 (18%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
IVG +GAGKS+L+ + RL++ + G I ID DI ++++ LR ++ ++ Q P LF GT+
Sbjct: 34 IVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTV 93
Query: 587 RYNLDPFG------RCHDTELW---DALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQL 637
+ N++ +G + D E + L K + V LS GE Q
Sbjct: 94 KDNIE-YGPMLKGEKNVDVEYYLSIVGLNKEYATRDV-------------KNLSGGEAQR 139
Query: 638 LCLARAL 644
+ +AR L
Sbjct: 140 VSIARTL 146
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 68.7 bits (169), Expect = 5e-13
Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 16/139 (11%)
Query: 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIAS--VELETLR 569
IP+ + ++G +G GKS+LL L RL +L G++ +D DI V++ LR
Sbjct: 23 IPKGEIT--ALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELR 80
Query: 570 SRLSVIPQDPVLFNGTIRYNLDPFG----RCHDTELWDALEKSHLKSKVVTMRSKLDSDV 625
R+ ++ Q P F G+I N+ +G E D + L+ + ++ +
Sbjct: 81 RRVGMVFQKPNPFPGSIYDNVA-YGLRLHGIKLKEELDERVEEALRK--AALWDEVKDRL 137
Query: 626 QGDQLSLGEKQLLCLARAL 644
LS G++Q LCLARAL
Sbjct: 138 HALGLSGGQQQRLCLARAL 156
Score = 56.0 bits (136), Expect = 9e-09
Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 9/99 (9%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----S 491
I+ +++++ Y D L ++S I GE ++G +G GKS+LL L RL +L
Sbjct: 1 IELRDLNVYYGDKH--ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD 58
Query: 492 SGQIKIDDFDIAS--VELETLRSRLSVIPQDPVLFNGIV 528
G++ +D DI V++ LR R+ ++ Q P F G +
Sbjct: 59 EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSI 97
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 71.6 bits (176), Expect = 6e-13
Identities = 31/92 (33%), Positives = 58/92 (63%)
Query: 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493
+G I+F+NV+ Y L N++F+I G+ + +VGR+G+GKS++ L R ++ G
Sbjct: 339 KGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEG 398
Query: 494 QIKIDDFDIASVELETLRSRLSVIPQDPVLFN 525
+I +D D+ L +LR++++++ Q+ LFN
Sbjct: 399 EILLDGHDLRDYTLASLRNQVALVSQNVHLFN 430
Score = 63.1 bits (154), Expect = 2e-10
Identities = 39/127 (30%), Positives = 73/127 (57%), Gaps = 10/127 (7%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
+VGR+G+GKS++ L R ++ G+I +D D+ L +LR++++++ Q+ LFN TI
Sbjct: 374 LVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTI 433
Query: 587 RYNL-----DPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLC 639
N+ + + R ++ +A ++ + M + LD+ + G LS G++Q +
Sbjct: 434 ANNIAYARTEQYSR---EQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIA 490
Query: 640 LARALLR 646
+ARALLR
Sbjct: 491 IARALLR 497
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 71.7 bits (176), Expect = 6e-13
Identities = 42/127 (33%), Positives = 73/127 (57%), Gaps = 4/127 (3%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
IVG +G+GKS+L L + SG+I ++ F + ++ TLR ++ +PQ+P +F+G+I
Sbjct: 505 IVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSI 564
Query: 587 RYNLDPFGRCHDT--ELWDALEKSHLKSKVVTMRSKLDSD--VQGDQLSLGEKQLLCLAR 642
NL + + + E+W A E + +K + M ++ +G +S G+KQ + LAR
Sbjct: 565 LENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALAR 624
Query: 643 ALLRKTK 649
ALL +K
Sbjct: 625 ALLTDSK 631
Score = 64.8 bits (158), Expect = 9e-11
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 417 ITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAG 476
+ SEF K + G I +VS Y +L+++S I IVG +G+G
Sbjct: 454 VDSEFINKKKRTELNNLNGDIVINDVSYSYGYGSN-ILSDISLTIKMNSKTTIVGMSGSG 512
Query: 477 KSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV 528
KS+L L + SG+I ++ F + ++ TLR ++ +PQ+P +F+G +
Sbjct: 513 KSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSI 564
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 69.2 bits (170), Expect = 8e-13
Identities = 31/88 (35%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+F+NVS RY + + +V+ I GE + ++G +G+GK++ L + RL+E +SG+I
Sbjct: 2 IEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEIL 59
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLF 524
ID DI+ ++ LR ++ + Q LF
Sbjct: 60 IDGEDISDLDPVELRRKIGYVIQQIGLF 87
Score = 53.1 bits (128), Expect = 2e-07
Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 13/125 (10%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGT 585
++G +G+GK++ L + RL+E +SG+I ID DI+ ++ LR ++ + Q LF + T
Sbjct: 32 LIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLT 91
Query: 586 IRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQG------DQLSLGEKQLLC 639
+ N+ WD K +K + + + D +LS G++Q +
Sbjct: 92 VAENI---ATVPKLLGWD---KERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVG 145
Query: 640 LARAL 644
+ARAL
Sbjct: 146 VARAL 150
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 67.9 bits (167), Expect = 1e-12
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
I+ KN+S + D VL +S + GE + I+G +G+GKS+LL L L E SG I
Sbjct: 2 MIEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI 59
Query: 496 KIDDFDI-ASVELETLRSRLSVIPQDPVLF 524
+D D+ ++ LR ++ ++ Q LF
Sbjct: 60 TVDGEDVGDKKDILKLRRKVGMVFQQFNLF 89
Score = 47.1 bits (113), Expect = 9e-06
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI-ASVELETLRSRLSVIPQDPVLF 582
I+G +G+GKS+LL L L E SG I +D D+ ++ LR ++ ++ Q LF
Sbjct: 33 IIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLF 89
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 67.5 bits (166), Expect = 1e-12
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ +N++ Y+ + ++S + GE G++G GAGK++ L L + +SG
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFNGIVGR 530
I+ + I + + + R L PQ LF+ + R
Sbjct: 61 INGYSIRT-DRKAARQSLGYCPQFDALFDELTVR 93
Score = 59.1 bits (144), Expect = 8e-10
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG- 584
G++G GAGK++ L L + +SG I+ + I + + + R L PQ LF+
Sbjct: 32 GLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRT-DRKAARQSLGYCPQFDALFDEL 90
Query: 585 TIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARAL 644
T+R +L + R + E+ L +V+ + K + + LS G K+ L LA AL
Sbjct: 91 TVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRAR--TLSGGMKRKLSLAIAL 148
Query: 645 L 645
+
Sbjct: 149 I 149
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 66.6 bits (163), Expect = 4e-12
Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+F+NV+ RY V N++ I GE + ++G +G+GK++ + + RL+E +SG+I
Sbjct: 1 IEFENVTKRYGGGKKAV-NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF 59
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLF 524
ID DI + LR ++ + Q LF
Sbjct: 60 IDGEDIREQDPVELRRKIGYVIQQIGLF 87
Score = 45.4 bits (108), Expect = 3e-05
Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 19/127 (14%)
Query: 528 VGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTI 586
+G +G+GK++ + + RL+E +SG+I ID DI + LR ++ + Q LF + T+
Sbjct: 33 IGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTV 92
Query: 587 RYNLDPFGRCHDTELWDALEK---SHLKSKVVTMRSKLDSDVQG------DQLSLGEKQL 637
N L L K ++ + + + + D +LS G++Q
Sbjct: 93 EEN---------IALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQR 143
Query: 638 LCLARAL 644
+ +ARAL
Sbjct: 144 VGVARAL 150
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 68.4 bits (168), Expect = 5e-12
Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 11/117 (9%)
Query: 416 PITSEFGQVKVKLADWPRQGTIKFKNVSLRYR-------DNWPLVLA--NVSFRINHGEN 466
+ E + + + +N+S RY V A +VSF + GE
Sbjct: 260 RLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGET 319
Query: 467 IGIVGRTGAGKSSLLVALFRLVELSSGQIKID--DFDIASVELETLRSRLSVIPQDP 521
+G+VG +G+GKS+L L L+ SSG I D D D+ EL LR R+ ++ QDP
Sbjct: 320 LGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDP 376
Score = 66.1 bits (162), Expect = 3e-11
Identities = 31/100 (31%), Positives = 59/100 (59%), Gaps = 11/100 (11%)
Query: 437 IKFKNVSLRY--RDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE----L 490
++ +N+++ + + +VSF + GE +GIVG +G+GKS+L +AL L+ +
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 491 SSGQIKIDDFDIASV---ELETLR-SRLSVIPQDPV-LFN 525
+SG++ +D D+ + E+ LR R+++I QDP+ N
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLN 105
Score = 59.1 bits (144), Expect = 4e-09
Identities = 43/164 (26%), Positives = 65/164 (39%), Gaps = 47/164 (28%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKID--DFDIASVELETLRSRLSVIPQDPVLF- 582
G+VG +G+GKS+L L L+ SSG I D D D+ EL LR R+ ++ QDP
Sbjct: 321 GLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSL 380
Query: 583 --NGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDS------------DVQGD 628
T+ L + L S R+++ D
Sbjct: 381 NPRMTVGDILA-----------EPLRIHGGGSGAE-RRARVAELLELVGLPPEFLDRYPH 428
Query: 629 QLSLGEKQLLCLARALLRKTKKKKKSGVNITRPVTSCDKVLVMD 672
+LS G++Q + +ARAL P K+L++D
Sbjct: 429 ELSGGQRQRVAIARAL-------------ALEP-----KLLILD 454
Score = 51.4 bits (124), Expect = 1e-06
Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 12/134 (8%)
Query: 526 GIVGRTGAGKSSLLVALFRLVE----LSSGQIKIDDFDIASV---ELETLR-SRLSVIPQ 577
GIVG +G+GKS+L +AL L+ ++SG++ +D D+ + E+ LR R+++I Q
Sbjct: 39 GIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQ 98
Query: 578 DPV-LFNG--TIRYNLDPFGRCHDTELWDALEKSHLKS-KVVTMRSKLDSDVQGDQLSLG 633
DP+ N TI + R H K ++ + V + D QLS G
Sbjct: 99 DPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGG 158
Query: 634 EKQLLCLARALLRK 647
+Q + +A AL K
Sbjct: 159 MRQRVMIAMALALK 172
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 66.0 bits (162), Expect = 5e-12
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+ + ++ + VL V + GE + I+G +G+GKS+LL + L+ SG++
Sbjct: 1 IELRGLTKSFGGR--TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVL 58
Query: 497 IDDFDIASV---ELETLRSRLSVIPQDPVLFN 525
ID DI+ + EL LR R+ ++ Q LF+
Sbjct: 59 IDGEDISGLSEAELYRLRRRMGMLFQSGALFD 90
Score = 43.6 bits (104), Expect = 1e-04
Identities = 43/128 (33%), Positives = 65/128 (50%), Gaps = 15/128 (11%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELETLRSRLSVIPQDPVLF 582
I+G +G+GKS+LL + L+ SG++ ID DI+ + EL LR R+ ++ Q LF
Sbjct: 30 AIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALF 89
Query: 583 NG-TIRYN----LDPFGRCHDTELWD-ALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQ 636
+ T+ N L R + E+ + LEK V +R D +LS G K+
Sbjct: 90 DSLTVFENVAFPLREHTRLSEEEIREIVLEKLEA----VGLRGAEDLYP--AELSGGMKK 143
Query: 637 LLCLARAL 644
+ LARAL
Sbjct: 144 RVALARAL 151
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 68.2 bits (167), Expect = 6e-12
Identities = 32/85 (37%), Positives = 50/85 (58%)
Query: 445 RYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS 504
Y L NV+F + G+ +GI G TG+GKS+LL + R ++S G I+ D +
Sbjct: 322 TYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTK 381
Query: 505 VELETLRSRLSVIPQDPVLFNGIVG 529
++L++ RSRL+V+ Q P LF+ V
Sbjct: 382 LQLDSWRSRLAVVSQTPFLFSDTVA 406
Score = 67.0 bits (164), Expect = 2e-11
Identities = 44/124 (35%), Positives = 72/124 (58%), Gaps = 5/124 (4%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
GI G TG+GKS+LL + R ++S G I+ D + ++L++ RSRL+V+ Q P LF+ T
Sbjct: 345 GICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDT 404
Query: 586 IRYNLDPFGRCHDT--ELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLA 641
+ N+ GR T E+ + + ++ + D++V +G LS G+KQ + +A
Sbjct: 405 VANNI-ALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIA 463
Query: 642 RALL 645
RALL
Sbjct: 464 RALL 467
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 65.3 bits (160), Expect = 7e-12
Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 16/107 (14%)
Query: 437 IKFKNVSLRYRDNWPLV--LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL---- 490
I+ KNVS + D V L +VS + GE GI+GR+GAGKS+L+ R +
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLI----RCINGLERP 57
Query: 491 SSGQIKIDDFDIASV---ELETLRSRLSVIPQDPVLFNGIVGRTGAG 534
+SG + +D D+ + EL R R+ +I Q FN + RT
Sbjct: 58 TSGSVLVDGTDLTLLSGKELRKARRRIGMIFQH---FNLLSSRTVFE 101
Score = 57.6 bits (140), Expect = 3e-09
Identities = 48/204 (23%), Positives = 82/204 (40%), Gaps = 74/204 (36%)
Query: 526 GIVGRTGAGKSSLLVALFRLVEL----SSGQIKIDDFDIASV---ELETLRSRLSVIPQD 578
GI+GR+GAGKS+L+ R + +SG + +D D+ + EL R R+ +I Q
Sbjct: 35 GIIGRSGAGKSTLI----RCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQH 90
Query: 579 PVLFN-----GTIRYNLDPFGRCHDTELWDALEKSHLKSKV------VTMRSKLDSDVQG 627
L + + L E+ + K+ ++ +V V + K D+
Sbjct: 91 FNLLSSRTVFENVALPL---------EIA-GVPKAEIEERVLELLELVGLEDKADA--YP 138
Query: 628 DQLSLGEKQLLCLARAL---------------------------LRKTKKKKKSGVNITR 660
QLS G+KQ + +ARAL LR ++ + +T
Sbjct: 139 AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRE----LGLTI 194
Query: 661 PVTS---------CDKVLVMDNGQ 675
+ + CD+V VM+ G+
Sbjct: 195 VLITHEMEVVKRICDRVAVMEKGE 218
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 68.2 bits (167), Expect = 7e-12
Identities = 39/125 (31%), Positives = 75/125 (60%), Gaps = 5/125 (4%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
+VG +G+GKS++ L L + + GQ+ +D + + L +++++ Q+PVLF+G++
Sbjct: 512 LVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSV 571
Query: 587 RYNLDPFG--RCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLAR 642
R N+ +G D E+ A + ++ ++ + D++V +G QLS G+KQ + +AR
Sbjct: 572 RENI-AYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIAR 630
Query: 643 ALLRK 647
AL+RK
Sbjct: 631 ALVRK 635
Score = 61.3 bits (149), Expect = 1e-09
Identities = 34/103 (33%), Positives = 62/103 (60%), Gaps = 3/103 (2%)
Query: 428 LADWPRQGTIKFKNVSLRY--RDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALF 485
LA +G I+F++VS Y R + P VL ++F ++ GE + +VG +G+GKS++ L
Sbjct: 470 LAPLNLEGLIEFQDVSFSYPNRPDVP-VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQ 528
Query: 486 RLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV 528
L + + GQ+ +D + + L +++++ Q+PVLF+G V
Sbjct: 529 NLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSV 571
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 66.2 bits (162), Expect = 8e-12
Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 5/91 (5%)
Query: 436 TIKFKNVSLRYRDNWPL---VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS 492
+IK +N++ Y + P L NV+ I GE +G++G TG+GKS+L+ L L++ +S
Sbjct: 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTS 61
Query: 493 GQIKIDDFDIA--SVELETLRSRLSVIPQDP 521
G+I ID DI V+L +R ++ ++ Q P
Sbjct: 62 GKIIIDGVDITDKKVKLSDIRKKVGLVFQYP 92
Score = 50.8 bits (122), Expect = 9e-07
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA--SVELETLRSRLSVIPQDP-- 579
F G++G TG+GKS+L+ L L++ +SG+I ID DI V+L +R ++ ++ Q P
Sbjct: 35 FVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEY 94
Query: 580 VLFNGTI 586
LF TI
Sbjct: 95 QLFEETI 101
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 64.5 bits (158), Expect = 1e-11
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+ KN+ + D VL + + GE + I+G +G+GKS+LL + L E SG I
Sbjct: 1 IEIKNLHKSFGDF--HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTII 58
Query: 497 IDDFDI--ASVELETLRSRLSVIPQDPVLF 524
ID + + LR ++ ++ Q LF
Sbjct: 59 IDGLKLTDDKKNINELRQKVGMVFQQFNLF 88
Score = 48.7 bits (117), Expect = 2e-06
Identities = 39/133 (29%), Positives = 58/133 (43%), Gaps = 28/133 (21%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI--ASVELETLRSRLSVIPQDPVLFNG 584
I+G +G+GKS+LL + L E SG I ID + + LR ++ ++ Q
Sbjct: 31 IIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQ------ 84
Query: 585 TIRYNLDPFGRCHDTELWD---ALEKSHLKSK---VVTMRSKLD-------SDVQGDQLS 631
+NL P H T L + A K SK L+ +D QLS
Sbjct: 85 ---FNLFP----HLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLS 137
Query: 632 LGEKQLLCLARAL 644
G++Q + +ARAL
Sbjct: 138 GGQQQRVAIARAL 150
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 64.6 bits (158), Expect = 1e-11
Identities = 30/86 (34%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+ +N+S RY L +VS I GE + ++G G+GKS+LL L L++ +SG++
Sbjct: 4 IEAENLSFRY-PGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVL 62
Query: 497 IDDFDIASVE-LETLRSRLSVIPQDP 521
+D D +S + L LR ++ ++ Q+P
Sbjct: 63 VDGLDTSSEKSLLELRQKVGLVFQNP 88
Score = 57.7 bits (140), Expect = 3e-09
Identities = 43/189 (22%), Positives = 81/189 (42%), Gaps = 41/189 (21%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE-LETLRSRLSVIPQDPV-- 580
++G G+GKS+LL L L++ +SG++ +D D +S + L LR ++ ++ Q+P
Sbjct: 32 RVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQ 91
Query: 581 LFNGTIRYNLD--PFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLL 638
LF T+ + E + E+ ++V + LD LS G+KQ +
Sbjct: 92 LFGPTVEDEVAFGLENLGLPRE--EIEERVAEALELVGLEELLDRPPF--NLSGGQKQRV 147
Query: 639 CLARAL---------------------------LRKTKKKKKSG-VNITRPV----TSCD 666
+A L L+K K++ + +T + D
Sbjct: 148 AIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYAD 207
Query: 667 KVLVMDNGQ 675
+V+V+D+G+
Sbjct: 208 RVVVLDDGK 216
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 63.8 bits (156), Expect = 2e-11
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+F NVS Y L +VS I GE + + G +GAGK++LL L+ + S GQ++
Sbjct: 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60
Query: 497 IDDFDIASV---ELETLRSRLSVIPQD 520
I D+ + +L LR R+ V+ QD
Sbjct: 61 IAGEDVNRLRGRQLPLLRRRIGVVFQD 87
Score = 53.8 bits (130), Expect = 4e-08
Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 20/132 (15%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELETLRSRLSVIPQD-PVLF 582
+ G +GAGK++LL L+ + S GQ++I D+ + +L LR R+ V+ QD +L
Sbjct: 33 LTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLP 92
Query: 583 NGTIRYN----LDPFGRCHDT---ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEK 635
+ T+ N L+ G+ + AL + L+ K D +QLS GE+
Sbjct: 93 DRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKA---------DAFPEQLSGGEQ 143
Query: 636 QLLCLARALLRK 647
Q + +ARA++
Sbjct: 144 QRVAIARAIVNS 155
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 64.9 bits (159), Expect = 2e-11
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 11/93 (11%)
Query: 440 KNVSLRYRDNWPLVLA--NVSFRINHGENIGIVGRTGAGKSSLLVALFRLV-----ELSS 492
KN+S+ + + +V A VSF + GE +GIVG +G+GKS L A+ L+ +
Sbjct: 5 KNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVG 64
Query: 493 GQIKIDDFDIASV---ELETLR-SRLSVIPQDP 521
G+I D D+ S+ EL +R +++I QDP
Sbjct: 65 GEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP 97
Score = 47.2 bits (113), Expect = 1e-05
Identities = 44/205 (21%), Positives = 76/205 (37%), Gaps = 63/205 (30%)
Query: 526 GIVGRTGAGKSSLLVALFRLV-----ELSSGQIKIDDFDIASV---ELETLR-SRLSVIP 576
GIVG +G+GKS L A+ L+ + G+I D D+ S+ EL +R +++I
Sbjct: 35 GIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIF 94
Query: 577 QDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKL----------DSDVQ 626
QDP +L+P D + + L + + D + +
Sbjct: 95 QDP-------MTSLNPVMTIGDQ-IAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERR 146
Query: 627 GD----QLSLGEKQ-------LLCLAR--------------------ALLRKTKKKKKSG 655
+LS G +Q L + LL++ +++K +
Sbjct: 147 LKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTA 206
Query: 656 -VNIT---RPVTS-CDKVLVMDNGQ 675
+ IT V D+V VM G+
Sbjct: 207 LILITHDLGVVAEIADRVAVMYAGR 231
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 62.9 bits (154), Expect = 3e-11
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ K +S Y L ++S + GE + ++G +G GK++LL + L SG+I
Sbjct: 1 LELKGLSKTYGSV--RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL 58
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLF 524
ID D+ V E R + ++ QD LF
Sbjct: 59 IDGRDVTGVPPE--RRNIGMVFQDYALF 84
Score = 54.8 bits (133), Expect = 2e-08
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 17/131 (12%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF- 582
F ++G +G GK++LL + L SG+I ID D+ V E R + ++ QD LF
Sbjct: 28 FLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPE--RRNIGMVFQDYALFP 85
Query: 583 ------NGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQ 636
N I + L G + + ++V + L+ +LS G++Q
Sbjct: 86 HLTVAEN--IAFGLKLRGVPKA----EIRARVRELLELVGLEGLLNRYP--HELSGGQQQ 137
Query: 637 LLCLARALLRK 647
+ LARAL R+
Sbjct: 138 RVALARALARE 148
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 63.0 bits (154), Expect = 4e-11
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ +N++ RY L VS + G G++G GAGK++L+ L L SSG I+
Sbjct: 1 LQLENLTKRYGKKR--ALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSSGTIR 57
Query: 497 IDDFDIASVELETLRSRLSVIPQDP 521
ID D+ + + LR R+ +PQ+
Sbjct: 58 IDGQDV-LKQPQKLRRRIGYLPQEF 81
Score = 55.7 bits (135), Expect = 1e-08
Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 12/127 (9%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NG 584
G++G GAGK++L+ L L SSG I+ID D+ + + LR R+ +PQ+ ++ N
Sbjct: 29 GLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDV-LKQPQKLRRRIGYLPQEFGVYPNF 87
Query: 585 TIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLD-SDVQGD---QLSLGEKQLLCL 640
T+R LD + +K++V + ++ D LS G ++ + +
Sbjct: 88 TVREFLDYIAWLKG------IPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGI 141
Query: 641 ARALLRK 647
A+AL+
Sbjct: 142 AQALVGD 148
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 62.8 bits (153), Expect = 4e-11
Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+F NV+ Y + L ++ I+ GE + +VG +GAGKS+LL +++ +SG I+
Sbjct: 1 IEFINVTKTYPNGTA-ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR 59
Query: 497 IDDFDIASV---ELETLRSRLSVIPQD 520
++ D++ + + LR ++ V+ QD
Sbjct: 60 VNGQDVSDLRGRAIPYLRRKIGVVFQD 86
Score = 52.0 bits (125), Expect = 2e-07
Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 22/141 (15%)
Query: 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELETLRSRLS 573
I +F +VG +GAGKS+LL +++ +SG I+++ D++ + + LR ++
Sbjct: 24 ISAGEFVF--LVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIG 81
Query: 574 VIPQD-PVLFNGTIRYNLDPFGRC--HDTELW-----DALEKSHLKSKVVTMRSKLDSDV 625
V+ QD +L + + N+ ALE L K + +
Sbjct: 82 VVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPA------ 135
Query: 626 QGDQLSLGEKQLLCLARALLR 646
+LS GE+Q + +ARA++
Sbjct: 136 ---ELSGGEQQRVAIARAIVN 153
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 64.8 bits (159), Expect = 4e-11
Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 13/124 (10%)
Query: 437 IKFKNVSLRYRDNWPLVLA--NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
I+ KN+S + + A NVS I GE G++G +GAGKS+L+ + L +SG+
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 495 IKIDDFDIASV---ELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVAL-FRLVELSS 550
+ +D D+ ++ EL R ++ +I Q FN + RT VAL L
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQH---FNLLSSRTVFDN----VALPLELAGTPK 114
Query: 551 GQIK 554
+IK
Sbjct: 115 AEIK 118
Score = 42.1 bits (100), Expect = 6e-04
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELETLRSRLSVIPQ 577
G++G +GAGKS+L+ + L +SG++ +D D+ ++ EL R ++ +I Q
Sbjct: 35 GVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQ 89
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 63.4 bits (155), Expect = 4e-11
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 436 TIKFKNVSLRYRD--NWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493
+ +N+S+ Y L NVS I GE +GIVG +G+GKS+L L L + SSG
Sbjct: 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSG 62
Query: 494 QIKIDDFDIASVELETLRSR-LSVIPQDP 521
I +D +A + R + ++ QDP
Sbjct: 63 SILLDGKPLAPKKRAKAFYRPVQMVFQDP 91
Score = 58.0 bits (141), Expect = 3e-09
Identities = 48/192 (25%), Positives = 76/192 (39%), Gaps = 51/192 (26%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR-LSVIPQDPVL-FN 583
GIVG +G+GKS+L L L + SSG I +D +A + R + ++ QDP N
Sbjct: 37 GIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLN 96
Query: 584 ------GTIRYNLDPFGRCHDTEL--WDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEK 635
+ L P G ++ + L++ L + R +LS G++
Sbjct: 97 PRRTVGRILSEPLRPHGL-SKSQQRIAELLDQVGLPPSFLDRRP--------HELSGGQR 147
Query: 636 QLLCLARALLRKTK-----------------------KKKKSGVNITRPVTS-------- 664
Q + +ARAL+ + K + K +T S
Sbjct: 148 QRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEH 207
Query: 665 -CDKVLVMDNGQ 675
CD++ VMDNGQ
Sbjct: 208 MCDRIAVMDNGQ 219
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 64.6 bits (158), Expect = 7e-11
Identities = 58/214 (27%), Positives = 80/214 (37%), Gaps = 47/214 (21%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
I +N+SL Y D +L NVS +N GE IG+VGR GAGKS+LL L +E SG++
Sbjct: 3 MITLENLSLAYGDR--PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60
Query: 496 KIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGR--TGAGKSSLLVALFRLVELSSGQI 553
+ R+ + Q+P L G L L L E + +
Sbjct: 61 TRP----KGL-------RVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYA--L 107
Query: 554 KIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSK 613
D D ELE L L D +A + L
Sbjct: 108 LADPDDELLAELEALLEEL-------------------------DGWTLEARAEEALLGL 142
Query: 614 VVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRK 647
+ S LS G ++ + LARALL +
Sbjct: 143 GFPDEDRPVSS-----LSGGWRRRVALARALLEE 171
Score = 53.4 bits (129), Expect = 3e-07
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++F+NVS Y L+L ++SFRI+ G+ I IVG GAGKS+LL L + SG +K
Sbjct: 322 LEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVK 380
Query: 497 I 497
+
Sbjct: 381 V 381
Score = 32.6 bits (75), Expect = 0.67
Identities = 40/164 (24%), Positives = 61/164 (37%), Gaps = 37/164 (22%)
Query: 494 QIKIDDFDIASVELETLRSRLS--VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSG 551
++ ++ L LS + D + IVG GAGKS+LL L + SG
Sbjct: 321 VLEFENVSKGYDGGRLLLKDLSFRIDRGDRI---AIVGPNGAGKSTLLKLLAGELGPLSG 377
Query: 552 QIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLK 611
+K+ ET+ ++ Q R LDP D + + L +
Sbjct: 378 TVKVG---------ETV--KIGYFDQH--------RDELDP-----DKTVLEELSEGFPD 413
Query: 612 SKVVTMRSKL--------DSDVQGDQLSLGEKQLLCLARALLRK 647
+R+ L D + LS GEK L LA+ LL+
Sbjct: 414 GDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQP 457
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 62.7 bits (153), Expect = 8e-11
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I +NVS Y +VL +VS I G I+G GAGKS+LL + RL++ SG+I
Sbjct: 2 ITIENVSKSYGTK--VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEIT 59
Query: 497 IDDFDIASVELETLRSRLSVIPQD 520
ID ++ S + L +LS++ Q+
Sbjct: 60 IDGLELTSTPSKELAKKLSILKQE 83
Score = 50.4 bits (121), Expect = 1e-06
Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-FNGT 585
I+G GAGKS+LL + RL++ SG+I ID ++ S + L +LS++ Q+ + T
Sbjct: 32 IIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLT 91
Query: 586 IRYNLDPFGR 595
+R +L FGR
Sbjct: 92 VR-DLVGFGR 100
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 61.3 bits (150), Expect = 1e-10
Identities = 49/196 (25%), Positives = 79/196 (40%), Gaps = 68/196 (34%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 583
IVG G+GKSSLL AL +E SG + ++ ++ + Q+P + N
Sbjct: 33 LVAIVGPVGSGKSSLLSALLGELEKLSGSV-------------SVPGSIAYVSQEPWIQN 79
Query: 584 GTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQ----GDQ---------L 630
GTIR N+ FG+ D E ++ KV+ L+ D++ GD L
Sbjct: 80 GTIRENI-LFGKPFDEERYE---------KVIK-ACALEPDLEILPDGDLTEIGEKGINL 128
Query: 631 SLGEKQLLCLARALLRKTK----------------------------KKKKSGVNITRPV 662
S G+KQ + LARA+ K+ + +T +
Sbjct: 129 SGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQL 188
Query: 663 ---TSCDKVLVMDNGQ 675
D+++V+DNG+
Sbjct: 189 QLLPHADQIVVLDNGR 204
Score = 58.6 bits (143), Expect = 9e-10
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 16/93 (17%)
Query: 437 IKFKNVSLRYRDN---WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493
I ++ S + L +++ + GE + IVG G+GKSSLL AL +E SG
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 494 QIKIDDFDIASVELETLRSRLSVIPQDPVLFNG 526
+ ++ ++ + Q+P + NG
Sbjct: 61 SV-------------SVPGSIAYVSQEPWIQNG 80
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 62.2 bits (152), Expect = 1e-10
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+ +N+++ Y + VL ++S + GE ++G GAGKS+LL A+ L++ SSG+IK
Sbjct: 5 IEVENLTVSYGNRP--VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIK 62
Query: 497 IDDFDIASVELETLRSRLSVIPQ 519
I + R R+ +PQ
Sbjct: 63 IFGKPVRKRR---KRLRIGYVPQ 82
Score = 47.6 bits (114), Expect = 7e-06
Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 24/137 (17%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQ------ 577
++G GAGKS+LL A+ L++ SSG+IKI + R R+ +PQ
Sbjct: 32 ITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRR---KRLRIGYVPQKSSVDR 88
Query: 578 -------DPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQL 630
D VL + F R + + + ++++ L+ V M D + +L
Sbjct: 89 SFPITVKDVVLLGRYGKKGW--FRR-LNKKDKEKVDEA-LER--VGMEDLRDRQIG--EL 140
Query: 631 SLGEKQLLCLARALLRK 647
S G+KQ + LARAL +
Sbjct: 141 SGGQKQRVLLARALAQN 157
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 61.3 bits (150), Expect = 1e-10
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 437 IKFKNVSLRYRDNWP--LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
++ +NVS Y L ++S + GE + +VG +G GKS+LL + L +SG+
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 495 IKIDDFDIASVELETLRSRLSVIPQDPVLF 524
+ +D + + Q L
Sbjct: 61 VLVDGEPVTGP-----GPDRGYVFQQDALL 85
Score = 39.0 bits (92), Expect = 0.003
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF 582
+VG +G GKS+LL + L +SG++ +D + + Q L
Sbjct: 35 LVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGP-----GPDRGYVFQQDALL 85
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 59.4 bits (145), Expect = 2e-10
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+ +N+S Y L+L ++S IN G+ IG+VGR GAGKS+LL + +E G +
Sbjct: 1 IELENLSKTYGGK--LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVT 58
Query: 497 IDD 499
Sbjct: 59 WGS 61
Score = 31.3 bits (72), Expect = 0.69
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 557
G+VGR GAGKS+LL + +E G +
Sbjct: 30 GLVGRNGAGKSTLLKLIAGELEPDEGIVTWGS 61
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 63.8 bits (156), Expect = 2e-10
Identities = 51/183 (27%), Positives = 86/183 (46%), Gaps = 33/183 (18%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
GI+G +G+GKS+L L + +SG +++D D+ + E L + +PQD LF+GT
Sbjct: 366 GIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGT 425
Query: 586 IRYNLDPFGRCHDTE-LWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLAR 642
I N+ FG D E + +A + + ++ + D+ + G LS G++Q + LAR
Sbjct: 426 IAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALAR 485
Query: 643 AL---------------------------LRKTKKKKKSGVNIT-RP--VTSCDKVLVMD 672
AL + K + + V I RP + S DK+LV+
Sbjct: 486 ALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQ 545
Query: 673 NGQ 675
+G+
Sbjct: 546 DGR 548
Score = 53.8 bits (130), Expect = 2e-07
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS 512
+L +SF + GE +GI+G +G+GKS+L L + +SG +++D D+ + E L
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGR 410
Query: 513 RLSVIPQDPVLFNGIV 528
+ +PQD LF+G +
Sbjct: 411 HIGYLPQDVELFDGTI 426
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 62.3 bits (152), Expect = 2e-10
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ +NVS + D + ++S I GE + ++G +G GK++LL + + SSG+I
Sbjct: 6 LEIRNVSKSFGDF--TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEIL 63
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLF 524
+D DI V E + + ++ Q LF
Sbjct: 64 LDGEDITDVPPE--KRPIGMVFQSYALF 89
Score = 46.5 bits (111), Expect = 2e-05
Identities = 37/126 (29%), Positives = 67/126 (53%), Gaps = 12/126 (9%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGT 585
++G +G GK++LL + + SSG+I +D DI V E + + ++ Q LF + T
Sbjct: 36 LLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPIGMVFQSYALFPHMT 93
Query: 586 IRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLD----SDVQGDQLSLGEKQLLCLA 641
+ N+ FG + L+K+ +K++V + +D + QLS G++Q + LA
Sbjct: 94 VEENV-AFGLKVRKK----LKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALA 148
Query: 642 RALLRK 647
RAL+ +
Sbjct: 149 RALVPE 154
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 60.5 bits (147), Expect = 4e-10
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I FKNVS +Y+ + L +VSF I G+ IVG G+GKS++ + + ++ SG+I
Sbjct: 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF 67
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRT 531
++ I E LR + ++ Q+P N VG
Sbjct: 68 YNNQAITDDNFEKLRKHIGIVFQNPD--NQFVGSI 100
Score = 34.7 bits (80), Expect = 0.12
Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 18/127 (14%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV-LFNGT 585
IVG G+GKS++ + + ++ SG+I ++ I E LR + ++ Q+P F G+
Sbjct: 40 IVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGS 99
Query: 586 I-----RYNLDPFGRCHD---TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQL 637
I + L+ +D + +AL++ V M + D + LS G+KQ
Sbjct: 100 IVKYDVAFGLENHAVPYDEMHRRVSEALKQ-------VDMLERADYEPNA--LSGGQKQR 150
Query: 638 LCLARAL 644
+ +A L
Sbjct: 151 VAIAGVL 157
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 62.0 bits (151), Expect = 5e-10
Identities = 49/183 (26%), Positives = 87/183 (47%), Gaps = 33/183 (18%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
I+G +G+GKS+L + + +SG +++D D+ + ET + +PQD LF GT
Sbjct: 348 AIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGT 407
Query: 586 IRYNLDPFGRCHDTE-LWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLAR 642
+ N+ FG D E + +A + + + ++ + D+ + G LS G++Q + LAR
Sbjct: 408 VAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALAR 467
Query: 643 AL---------------------------LRKTKKKKKSGVNIT-RP-VTSC-DKVLVMD 672
AL ++ K + + V IT RP + C DK+LV+
Sbjct: 468 ALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQ 527
Query: 673 NGQ 675
+G+
Sbjct: 528 DGR 530
Score = 59.3 bits (144), Expect = 3e-09
Identities = 28/96 (29%), Positives = 50/96 (52%)
Query: 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493
+G + +NV++ L +SF + GE + I+G +G+GKS+L + + +SG
Sbjct: 314 EGHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSG 373
Query: 494 QIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVG 529
+++D D+ + ET + +PQD LF G V
Sbjct: 374 SVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVA 409
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 61.1 bits (149), Expect = 5e-10
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
++ KNV + VL +V+ I GE + ++G +G GKS+LL + L E +SG+I
Sbjct: 3 ELELKNVRKSFGSF--EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI 60
Query: 496 KIDDFDIASVELETLRSRLSVIPQDPVLF 524
ID D+ +L + ++++ Q+ L+
Sbjct: 61 LIDGRDVT--DLPPEKRGIAMVFQNYALY 87
Score = 50.3 bits (121), Expect = 2e-06
Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 21/133 (15%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF- 582
F ++G +G GKS+LL + L E +SG+I ID D+ +L + ++++ Q+ L+
Sbjct: 31 FVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVT--DLPPEKRGIAMVFQNYALYP 88
Query: 583 NGTIRYNLDPFG--------RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGE 634
+ T+ N+ FG D + + + L L+ + QLS G+
Sbjct: 89 HMTVYENIA-FGLKLRGVPKAEIDKRVKEVAKLLGL-------EHLLNR--KPLQLSGGQ 138
Query: 635 KQLLCLARALLRK 647
+Q + LARAL+RK
Sbjct: 139 RQRVALARALVRK 151
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 59.2 bits (144), Expect = 5e-10
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 440 KNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 499
+N+S Y+ +L ++S + GE I + G+ GAGK++L L L++ SSG I ++
Sbjct: 3 ENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG 61
Query: 500 FDIASVELETLRSRLSVIPQDP 521
I + E R + + QD
Sbjct: 62 KPIKAKE---RRKSIGYVMQDV 80
Score = 45.7 bits (109), Expect = 2e-05
Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 17/129 (13%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
+ G+ GAGK++L L L++ SSG I ++ I + E R + + QD
Sbjct: 30 ALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKE---RRKSIGYVMQDV------ 80
Query: 586 IRYNLDPFGRCHDTELWDALEKSHLK-SKVVTMRSKLDSDVQGDQ----LSLGEKQLLCL 640
Y L F EL L++ + T+ LD ++ LS G+KQ L +
Sbjct: 81 -DYQL--FTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAI 137
Query: 641 ARALLRKTK 649
A ALL
Sbjct: 138 AAALLSGKD 146
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 59.5 bits (145), Expect = 7e-10
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 20/82 (24%)
Query: 437 IKFKNVSLRYRDN--------------------WPLVLANVSFRINHGENIGIVGRTGAG 476
I+ +NVS Y L +VSF + GE IG++GR GAG
Sbjct: 1 IELENVSKSYPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAG 60
Query: 477 KSSLLVALFRLVELSSGQIKID 498
KS+LL L + SG + +
Sbjct: 61 KSTLLRLLAGIYPPDSGTVTVR 82
Score = 41.0 bits (97), Expect = 0.001
Identities = 40/174 (22%), Positives = 76/174 (43%), Gaps = 30/174 (17%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET-LRSRLSVIPQDPVLFNG 584
G++GR GAGKS+LL L + SG + + + + L L+ + + NG
Sbjct: 52 GLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGR--ENIYLNG 109
Query: 585 TIRYNLDP------FGRCHD-TELWDALEKSHLKSKVVTMRSKL----DSDVQGDQLSLG 633
+ L + +EL D ++ +K+ M+++L + ++ D L +
Sbjct: 110 RL-LGLSRKEIDEKIDEIIEFSELGDFIDL-PVKTYSSGMKARLAFAIATALEPDILLID 167
Query: 634 EK--------QLLCLARALLRKTKKKKKSGVNITRPVTS----CDKVLVMDNGQ 675
E Q C R LR+ K+ K+ + ++ +S CD+ LV++ G+
Sbjct: 168 EVLAVGDAAFQEKCQRR--LRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGK 219
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 59.5 bits (145), Expect = 8e-10
Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ + VS + VL +++ + GE + I+G +G GKS+LL + L + +SG++
Sbjct: 4 LEIEGVSKSFGGV--EVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVL 61
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLF 524
+D + + + Q+ L
Sbjct: 62 LDGRPVTGP-----GPDIGYVFQEDALL 84
Score = 44.5 bits (106), Expect = 8e-05
Identities = 37/157 (23%), Positives = 60/157 (38%), Gaps = 46/157 (29%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-T 585
I+G +G GKS+LL + L + +SG++ +D + + + Q+ L T
Sbjct: 34 ILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIGYVFQEDALLPWLT 88
Query: 586 IRYN----LDPFGRCHDTELWDA---LEKSHLKSKVVTMRSKLDSDVQG---DQLSLGEK 635
+ N L+ G+ A LE L + QLS G +
Sbjct: 89 VLDNVALGLELRGKSKAEARERAKELLELVGLA------------GFEDKYPHQLSGGMR 136
Query: 636 QLLCLARALLRKTKKKKKSGVNITRPVTSCDKVLVMD 672
Q + +ARAL TRP K+L++D
Sbjct: 137 QRVAIARAL-------------ATRP-----KLLLLD 155
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 58.3 bits (142), Expect = 1e-09
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
Query: 438 KFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKI 497
+ +++++ Y + VL +VSF + GE + IVG GAGKS+LL A+ L++ +SG I++
Sbjct: 1 EVEDLTVSYGGH--PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV 58
Query: 498 DDFDIASVELETLRSRLSVIPQ 519
+ R R+ +PQ
Sbjct: 59 FGKPLEKE-----RKRIGYVPQ 75
Score = 45.2 bits (108), Expect = 3e-05
Identities = 41/138 (29%), Positives = 59/138 (42%), Gaps = 28/138 (20%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQ------ 577
F IVG GAGKS+LL A+ L++ +SG I++ + R R+ +PQ
Sbjct: 27 FLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKE-----RKRIGYVPQRRSIDR 81
Query: 578 -------DPVLFNGTIRYNLDPFGRCHDTELWD-ALEKSHLKSKVVTMRSKLDSDVQGDQ 629
D VL L D D ALE+ V + D Q +
Sbjct: 82 DFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALER-------VGLSELADR--QIGE 132
Query: 630 LSLGEKQLLCLARALLRK 647
LS G++Q + LARAL++
Sbjct: 133 LSGGQQQRVLLARALVQD 150
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 58.7 bits (142), Expect = 1e-09
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 444 LRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA 503
+ Y +L N+S + GE I I G +G GKS+LL + L+ +SG + + D++
Sbjct: 9 VGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVS 68
Query: 504 SVELETLRSRLSVIPQDPVLFNGIV 528
+++ E R ++S Q P LF V
Sbjct: 69 TLKPEAYRQQVSYCAQTPALFGDTV 93
Score = 54.5 bits (131), Expect = 3e-08
Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 3/125 (2%)
Query: 520 DPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP 579
F I G +G GKS+LL + L+ +SG + + D+++++ E R ++S Q P
Sbjct: 27 RAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTP 86
Query: 580 VLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLC 639
LF T+ NL + + A L + S L ++ +LS GEKQ +
Sbjct: 87 ALFGDTVEDNLIFPWQIRNRRPDRAAALDLLA-RFALPDSILTKNIT--ELSGGEKQRIA 143
Query: 640 LARAL 644
L R L
Sbjct: 144 LIRNL 148
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 60.8 bits (148), Expect = 1e-09
Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 456 NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELETLRS 512
+S + G+ +G+VG +G+GKS+L +AL RL+ S G+I+ D DI + E+ LR
Sbjct: 305 GISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP-SQGEIRFDGQDIDGLSRKEMRPLRR 363
Query: 513 RLSVIPQDP 521
R+ V+ QDP
Sbjct: 364 RMQVVFQDP 372
Score = 50.4 bits (121), Expect = 3e-06
Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 4/57 (7%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELETLRSRLSVIPQDP 579
G+VG +G+GKS+L +AL RL+ S G+I+ D DI + E+ LR R+ V+ QDP
Sbjct: 317 GLVGESGSGKSTLGLALLRLIP-SQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDP 372
Score = 46.9 bits (112), Expect = 3e-05
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Query: 437 IKFKNVSLRYR--DNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRL-----VE 489
+ +N+S+ + + +SF I GE + +VG +G+GKS +++ L
Sbjct: 7 LSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAA 66
Query: 490 LSSGQIKIDDFDIASVELETLR----SRLSVIPQDP 521
SG I D D+ + LR +++ +I Q+P
Sbjct: 67 HPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEP 102
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 58.6 bits (143), Expect = 2e-09
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 440 KNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 499
+N+S+R +L +VS + GE + I+G GAGKS+LL AL + SG+++++
Sbjct: 6 RNLSVRLGGR--TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNG 63
Query: 500 FDIASVELETLRSRLSVIPQDPVL 523
+A L R +V+PQ L
Sbjct: 64 RPLADWSPAELARRRAVLPQHSSL 87
Score = 49.4 bits (119), Expect = 2e-06
Identities = 41/130 (31%), Positives = 57/130 (43%), Gaps = 23/130 (17%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-FNG 584
I+G GAGKS+LL AL + SG+++++ +A L R +V+PQ L F
Sbjct: 32 AILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPF 91
Query: 585 T----IRYNLDPFGRC--HDTELWD-ALEK---SHLKSKVVTMRSKLDSDVQGDQLSLGE 634
T + P G D L AL + +HL D QLS GE
Sbjct: 92 TVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLA----------GRDYP--QLSGGE 139
Query: 635 KQLLCLARAL 644
+Q + LAR L
Sbjct: 140 QQRVQLARVL 149
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 57.5 bits (140), Expect = 3e-09
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 437 IKFKNVSLRYRDNWP--LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
I+ KN+S Y L VS I GE + IVG +G+GKS+LL L L +SG+
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 495 IKIDDFDIAS---VELETLRSR-LSVIPQD 520
+++D DI+ EL R R + + Q
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQS 90
Score = 39.0 bits (92), Expect = 0.004
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS---VELETLRSR-LSVIPQDPVLF 582
IVG +G+GKS+LL L L +SG++++D DI+ EL R R + + Q L
Sbjct: 35 IVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLL 94
Query: 583 NG-TIRYN----LDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQL 637
T N L G + E++ + V + +L+ +LS G++Q
Sbjct: 95 PDLTALENVELPLLLAGV----PKKERRERAEELLERVGLGDRLNHYPS--ELSGGQQQR 148
Query: 638 LCLARAL 644
+ +ARAL
Sbjct: 149 VAIARAL 155
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 57.1 bits (139), Expect = 4e-09
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS 512
+L VS + GE + ++GR GAGK++LL + L+ SG I+ D DI + R+
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHE-RA 73
Query: 513 RLSV--IPQDPVLF 524
R + +P+ +F
Sbjct: 74 RAGIGYVPEGRRIF 87
Score = 56.3 bits (137), Expect = 7e-09
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 15/131 (11%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV--IPQDPVLF- 582
++GR GAGK++LL + L+ SG I+ D DI + R+R + +P+ +F
Sbjct: 30 ALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHE-RARAGIGYVPEGRRIFP 88
Query: 583 NGTIRYNLD--PFGRCHDTELWDALEKSHLKSKVVTMRSKLD--SDVQGDQLSLGEKQLL 638
T+ NL + R LE +V + +L LS GE+Q+L
Sbjct: 89 ELTVEENLLLGAYARRRAKRKAR-LE------RVYELFPRLKERRKQLAGTLSGGEQQML 141
Query: 639 CLARALLRKTK 649
+ARAL+ + K
Sbjct: 142 AIARALMSRPK 152
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 57.6 bits (140), Expect = 4e-09
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+ + V+ + D ++L V + GE + I+G +G+GKS+LL + L+ G+I
Sbjct: 9 IEVRGVTKSFGDR--VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEIL 66
Query: 497 IDDFDIASV---ELETLRSRLSVIPQDPVLF 524
ID DI + EL +R R+ V+ Q LF
Sbjct: 67 IDGEDIPQLSEEELYEIRKRMGVLFQQGALF 97
Score = 40.3 bits (95), Expect = 0.002
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELETLRSRLSVIPQDPVLF 582
I+G +G+GKS+LL + L+ G+I ID DI + EL +R R+ V+ Q LF
Sbjct: 38 AILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALF 97
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 57.0 bits (138), Expect = 6e-09
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 4/125 (3%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIP-QDPVLFNG 584
G++G GAGK++LL + L+ SG++ ID D + +R ++ V+ + +
Sbjct: 32 GLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIGVLFGERGLYARL 90
Query: 585 TIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARAL 644
T R NL F R + + + SK + + LD V S G KQ + +ARAL
Sbjct: 91 TARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGE--FSTGMKQKVAIARAL 148
Query: 645 LRKTK 649
+
Sbjct: 149 VHDPS 153
Score = 50.9 bits (122), Expect = 7e-07
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 7/101 (6%)
Query: 454 LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513
+ +VSF GE G++G GAGK++LL + L+ SG++ ID D + +R +
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRK 76
Query: 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIK 554
+ V+ + G+ R A ++ A RL LS +IK
Sbjct: 77 IGVLFGE----RGLYARLTARENLKYFA--RLNGLSRKEIK 111
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 56.8 bits (138), Expect = 6e-09
Identities = 30/96 (31%), Positives = 54/96 (56%), Gaps = 5/96 (5%)
Query: 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493
T+ +N++ Y+ V+ +VS +N GE +G++G GAGK++ + LV SG
Sbjct: 2 MSTLVAENLAKSYKKR--KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSG 59
Query: 494 QIKIDDFDIASVELETLRSRLSV--IPQDPVLFNGI 527
+I +DD DI + + R+RL + +PQ+ +F +
Sbjct: 60 KILLDDEDITKLPMH-KRARLGIGYLPQEASIFRKL 94
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 57.5 bits (139), Expect = 6e-09
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 7/93 (7%)
Query: 436 TIKFKNVSLRYRDNWPLV---LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS 492
+IKF+NV Y P+ L N+SF + G + +VG TG+GKS+L+ L++ SS
Sbjct: 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSS 61
Query: 493 GQIKIDDFDI----ASVELETLRSRLSVIPQDP 521
G I I + I + L+ LR ++S++ Q P
Sbjct: 62 GTITIAGYHITPETGNKNLKKLRKKVSLVFQFP 94
Score = 39.0 bits (91), Expect = 0.006
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI----ASVELETLRSRLSVIPQDP 579
F +VG TG+GKS+L+ L++ SSG I I + I + L+ LR ++S++ Q P
Sbjct: 35 FVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFP 94
Query: 580 --VLFNGTI 586
LF T+
Sbjct: 95 EAQLFENTV 103
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 56.7 bits (138), Expect = 7e-09
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL-R 511
L VS + GE + ++GR GAGK++LL + LV SG+I D DI + R
Sbjct: 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERAR 77
Query: 512 SRLSVIPQ 519
++ +P+
Sbjct: 78 LGIAYVPE 85
Score = 55.9 bits (136), Expect = 1e-08
Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 18/132 (13%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL-RSRLSVIPQDPVLF-NG 584
++GR GAGK++LL + LV SG+I D DI + R ++ +P+ +F
Sbjct: 34 LLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRL 93
Query: 585 TIRYNLD--PFGRCHDTELWDALEKSH-----LKSKVVTMRSKLDSDVQGDQLSLGEKQL 637
T+ NL + R LE+ + LK R++ LS GE+Q+
Sbjct: 94 TVEENLLLGAYARRDKEAQERDLEEVYELFPRLK----ERRNQR-----AGTLSGGEQQM 144
Query: 638 LCLARALLRKTK 649
L +ARAL+ + K
Sbjct: 145 LAIARALMSRPK 156
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 56.6 bits (137), Expect = 1e-08
Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 437 IKFKNVSLRYRDN----WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS 492
IK KNVS +Y N L L +V+ + GE + I+GR G+GKS++ + L+ S
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 493 GQIKIDDFDIASVE-LETLRSRLSVIPQDP 521
G++ +D D + E L +R++ ++ Q+P
Sbjct: 65 GKVYVDGLDTSDEENLWDIRNKAGMVFQNP 94
Score = 35.8 bits (83), Expect = 0.048
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE-LETLRSRLSVIPQDP 579
F I+GR G+GKS++ + L+ S G++ +D D + E L +R++ ++ Q+P
Sbjct: 38 FLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNP 94
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 56.1 bits (136), Expect = 1e-08
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 437 IKFKNVSLRYR-DNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
+ K ++ R L ++SF I GE +GI+G GAGKS+LL + + + +SG++
Sbjct: 25 KRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV 84
Query: 496 KID 498
K+
Sbjct: 85 KVT 87
Score = 36.1 bits (84), Expect = 0.045
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKID 556
GI+G GAGKS+LL + + + +SG++K+
Sbjct: 57 GIIGHNGAGKSTLLKLIAGIYKPTSGKVKVT 87
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 55.5 bits (134), Expect = 1e-08
Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 10/124 (8%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG- 584
G++G GAGK++ L L L+E +G +D FD+ E R RL + L++
Sbjct: 35 GLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEA-RRRLGFVSDSTGLYDRL 93
Query: 585 TIRYNLDPFGRCHD---TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLA 641
T R NL+ F + EL LE+ + + M LD V G S G +Q + +A
Sbjct: 94 TARENLEYFAGLYGLKGDELTARLEEL---ADRLGMEELLDRRVGG--FSTGMRQKVAIA 148
Query: 642 RALL 645
RAL+
Sbjct: 149 RALV 152
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 54.7 bits (132), Expect = 2e-08
Identities = 28/83 (33%), Positives = 44/83 (53%)
Query: 446 YRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV 505
Y +L N+SF + GE I G +G GKS+LL + L+ +SG + + DI+++
Sbjct: 15 YLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTL 74
Query: 506 ELETLRSRLSVIPQDPVLFNGIV 528
+ E R ++S Q P LF V
Sbjct: 75 KPEIYRQQVSYCAQTPTLFGDTV 97
Score = 49.3 bits (118), Expect = 2e-06
Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 13/126 (10%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 583
F I G +G GKS+LL + L+ +SG + + DI++++ E R ++S Q P LF
Sbjct: 35 FKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFG 94
Query: 584 GTIRYNLD-PFGRCHDT----ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLL 638
T+ NL P+ + D LE+ L ++T +LS GEKQ +
Sbjct: 95 DTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNI--------AELSGGEKQRI 146
Query: 639 CLARAL 644
L R L
Sbjct: 147 SLIRNL 152
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 56.4 bits (136), Expect = 2e-08
Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 21/137 (15%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-F 582
G+VG GAGK++LL A+ + ++G + + D+ ++ R++ +PQD L F
Sbjct: 31 LVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSF 90
Query: 583 NGTIRY-----------NLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLS 631
+R D + + A+E++ + D V LS
Sbjct: 91 EFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFA-------DRPV--TSLS 141
Query: 632 LGEKQLLCLARALLRKT 648
GE+Q + LARAL + T
Sbjct: 142 GGERQRVLLARALAQAT 158
Score = 56.0 bits (135), Expect = 3e-08
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 9/103 (8%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
I ++S+ + D VL V + G +G+VG GAGK++LL A+ + ++G +
Sbjct: 3 MIDVSDLSVEFGDT--TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTV 60
Query: 496 KIDDFDIASVELETLRSRLSVIPQDPVL---FNG--IV--GRT 531
+ D+ ++ R++ +PQD L F+ +V GRT
Sbjct: 61 LVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRT 103
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 54.7 bits (132), Expect = 3e-08
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 432 PRQGTIKFKNVSLRYRDN-WPL-VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE 489
P + I+ ++S L +L V + GE + IVG +G+GKS+LL L L +
Sbjct: 2 PAENIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD 61
Query: 490 LSSGQIKIDDFDIASVELETLRSRL 514
SSG++++ + ++ E R+ L
Sbjct: 62 PSSGEVRLLGQPLHKLD-EDARAAL 85
Score = 38.9 bits (91), Expect = 0.004
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 19/130 (14%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELE---TLRSR--------LSV 574
IVG +G+GKS+LL L L + SSG++++ + ++ + LR+R +
Sbjct: 40 AIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHL 99
Query: 575 IPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGE 634
IP L N + L G D+ + + V + +L QLS GE
Sbjct: 100 IPNLTALENVALPLELR--GESSA----DSRAGAKALLEAVGLGKRLTH--YPAQLSGGE 151
Query: 635 KQLLCLARAL 644
+Q + LARA
Sbjct: 152 QQRVALARAF 161
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 55.4 bits (134), Expect = 3e-08
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+ +++S RY D L +VSF + GE + IVG G+GKS+L L L+ +G I
Sbjct: 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTIT 65
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRT 531
+ ++ + +R ++ ++ Q+P N VG T
Sbjct: 66 VGGMVLSEETVWDVRRQVGMVFQNPD--NQFVGAT 98
Score = 31.5 bits (72), Expect = 1.3
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP 579
IVG G+GKS+L L L+ +G I + ++ + +R ++ ++ Q+P
Sbjct: 38 IVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNP 90
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 54.1 bits (131), Expect = 3e-08
Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+K +++ Y VL ++S + GE G +G GAGK++ + + L++ SG+I
Sbjct: 1 LKTNDLTKTYGKK--RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT 58
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFNGIVGR 530
D + R+ + + P + + R
Sbjct: 59 FDGKSY--QKNIEALRRIGALIEAPGFYPNLTAR 90
Score = 49.9 bits (120), Expect = 7e-07
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 13/123 (10%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NG 584
G +G GAGK++ + + L++ SG+I D + R+ + + P + N
Sbjct: 30 GFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSY--QKNIEALRRIGALIEAPGFYPNL 87
Query: 585 TIRYNLDPFGRCHDTELWDALEKSHLKS--KVVTMRSKLDSDVQGDQLSLGEKQLLCLAR 642
T R NL R + K + VV ++ V+G SLG KQ L +A
Sbjct: 88 TARENLRLLARLLG------IRKKRIDEVLDVVGLKDSAKKKVKG--FSLGMKQRLGIAL 139
Query: 643 ALL 645
ALL
Sbjct: 140 ALL 142
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 54.9 bits (132), Expect = 4e-08
Identities = 39/130 (30%), Positives = 68/130 (52%), Gaps = 14/130 (10%)
Query: 527 IVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDI--ASVELETLRSRLSVIPQDP 579
I+G +G GKS+ + L R+VEL ++G+I D +I S +E LR+ + ++ Q P
Sbjct: 55 IIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKP 114
Query: 580 VLFNGTIRYNLDPFGRCH---DTELWDALEKSHLKSKVV--TMRSKLDSDVQGDQLSLGE 634
F +I N+ + H D + D + + L+ + ++ +L + G LS G+
Sbjct: 115 NPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYG--LSGGQ 172
Query: 635 KQLLCLARAL 644
+Q LC+AR L
Sbjct: 173 QQRLCIARCL 182
Score = 46.8 bits (111), Expect = 2e-05
Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 9/105 (8%)
Query: 427 KLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFR 486
K+ P++ +N++L Y ++ L N++ I+ E I+G +G GKS+ + L R
Sbjct: 15 KIETAPKKVVFDTQNLNLWYGEDH--ALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNR 72
Query: 487 LVEL-----SSGQIKIDDFDI--ASVELETLRSRLSVIPQDPVLF 524
+VEL ++G+I D +I S +E LR+ + ++ Q P F
Sbjct: 73 MVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPF 117
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 54.5 bits (132), Expect = 4e-08
Identities = 46/143 (32%), Positives = 76/143 (53%), Gaps = 23/143 (16%)
Query: 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSS-----GQIKIDDFDI--ASVELETLR 569
IP++ V ++G +G GKS+LL L R+ +L G++ +D +I V++ LR
Sbjct: 30 IPKNKV--TALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELR 87
Query: 570 SRLSVIPQDPVLFNGTIRYNLDPFG-RCH---DTELWD----ALEKSHLKSKVVTMRSKL 621
R+ ++ Q P F +I N+ +G R H D EL + +L+K+ L +V + +L
Sbjct: 88 RRVGMVFQKPNPFPMSIYDNV-AYGLRLHGIKDKELDEIVESSLKKAALWDEV---KDRL 143
Query: 622 DSDVQGDQLSLGEKQLLCLARAL 644
LS G++Q LC+ARAL
Sbjct: 144 HKS--ALGLSGGQQQRLCIARAL 164
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 54.1 bits (131), Expect = 4e-08
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 437 IKFKNVSLRYRDNWPL--VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
I+ KNVS Y L +V+ I GE + IVG +G+GKS+LL L L + +SG+
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 495 IKIDDFDIASV---ELETLR-SRLSVIPQD 520
+ I+ D+ + EL LR ++ + Q+
Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQN 91
Score = 48.7 bits (117), Expect = 3e-06
Identities = 34/127 (26%), Positives = 65/127 (51%), Gaps = 6/127 (4%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELETLR-SRLSVIPQD- 578
F IVG +G+GKS+LL L L + +SG++ I+ D+ + EL LR ++ + Q+
Sbjct: 33 FVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNF 92
Query: 579 PVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLL 638
+L + T+ N++ + +V+ + +L + +LS G++Q +
Sbjct: 93 NLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL-KKKPSELSGGQQQRV 151
Query: 639 CLARALL 645
+ARAL+
Sbjct: 152 AIARALI 158
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 54.6 bits (131), Expect = 5e-08
Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 4/96 (4%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+ +NVS Y D P L N++ I GE IGI+G+ G+GKS+L + L L+ G++
Sbjct: 2 IRLENVSYSYPDGTP-ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60
Query: 497 IDDFDIASV-ELETLRSRLSVIPQDPVLFNGIVGRT 531
+ D +L+ +R + ++ Q+P VGRT
Sbjct: 61 VSGIDTGDFSKLQGIRKLVGIVFQNPE--TQFVGRT 94
Score = 33.8 bits (77), Expect = 0.25
Identities = 44/188 (23%), Positives = 81/188 (43%), Gaps = 41/188 (21%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV-ELETLRSRLSVIPQDP-VL 581
+ GI+G+ G+GKS+L + L L+ G++ + D +L+ +R + ++ Q+P
Sbjct: 30 YIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQ 89
Query: 582 FNG-TIRYNL--DPFGRC-HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQL 637
F G T+ +L P C E+ ++++ + + R + LS G+ Q
Sbjct: 90 FVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHR-----SPKTLSGGQGQC 144
Query: 638 LCLA------------------------RALLRKTKK---KKKSGVNIT---RPVTSCDK 667
+ LA A+L + KK K K+ V IT + D+
Sbjct: 145 VALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADR 204
Query: 668 VLVMDNGQ 675
++VMD G+
Sbjct: 205 IIVMDRGK 212
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 54.2 bits (131), Expect = 6e-08
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
T++ +N+++ Y +L ++S + G+ ++G G GKS+LL RL+ SG +
Sbjct: 2 TLRTENLTVGYGTK--RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTV 59
Query: 496 KIDDFDIASVELETLRSRLSVIPQDPVLFNGI 527
+ D I+ + L RL+++PQ + GI
Sbjct: 60 FLGDKPISMLSSRQLARRLALLPQHHLTPEGI 91
Score = 45.4 bits (108), Expect = 4e-05
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 13/130 (10%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
++G G GKS+LL RL+ SG + + D I+ + L RL+++PQ + G
Sbjct: 33 LIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGIT 92
Query: 587 RYNLDPFGRCHDTELWDAL--------EKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLL 638
L +GR LW L ++ ++++ + + +D LS G++Q
Sbjct: 93 VRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTD-----LSGGQRQRA 147
Query: 639 CLARALLRKT 648
LA L + T
Sbjct: 148 FLAMVLAQDT 157
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 53.9 bits (129), Expect = 6e-08
Identities = 52/177 (29%), Positives = 84/177 (47%), Gaps = 21/177 (11%)
Query: 490 LSSGQIKIDDFDIASVEL-----ETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFR 544
+ +G+ D F+I+ + L L+ IP + + GI+G +G+GKS+LL L R
Sbjct: 1 MEAGKSAEDVFNISRLYLYINDKAILKDITIKIPNNSIF--GIMGPSGSGKSTLLKVLNR 58
Query: 545 LVELSSGQIKID------DFDIASVELETLRSRLSVIPQDPVLFN-----GTIRYNLDPF 593
L+E+ +IK+D DI ++ LR + ++ Q P F I Y L
Sbjct: 59 LIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSH 118
Query: 594 GRCHDTELWDALEKSHLKSKV-VTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTK 649
G E+ +E+ K + + +L+S QLS G++Q L +ARAL K K
Sbjct: 119 GIKEKREIKKIVEECLRKVGLWKEVYDRLNS--PASQLSGGQQQRLTIARALALKPK 173
Score = 45.8 bits (108), Expect = 3e-05
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKID------DFDIASVE 506
+L +++ +I + GI+G +G+GKS+LL L RL+E+ +IK+D DI ++
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 507 LETLRSRLSVIPQDPVLF 524
LR + ++ Q P F
Sbjct: 85 AIKLRKEVGMVFQQPNPF 102
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 55.1 bits (133), Expect = 6e-08
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 454 LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR 511
+ + S + GE I+G +G+GKS+L+ L RL+E + G+I +D DIA + LR
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELR 101
Score = 45.8 bits (109), Expect = 5e-05
Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 23/131 (17%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR----SRLSVI------- 575
I+G +G+GKS+L+ L RL+E + G+I +D DIA + LR ++S++
Sbjct: 59 IMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALL 118
Query: 576 PQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLD--SDVQGDQLSLG 633
P VL N + + L+ G + ++ L+ +D ++LS G
Sbjct: 119 PHRTVLEN--VAFGLEVQGV--------PKAEREERALEALELVGLEGYADKYPNELSGG 168
Query: 634 EKQLLCLARAL 644
+Q + LARAL
Sbjct: 169 MQQRVGLARAL 179
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 55.3 bits (134), Expect = 7e-08
Identities = 40/125 (32%), Positives = 68/125 (54%), Gaps = 7/125 (5%)
Query: 527 IVGRTGAGKSSL--LVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG 584
+VG +G+GKS++ LVA L + SG+I D + E L + ++++ QD LF G
Sbjct: 510 LVGGSGSGKSTIAKLVA--GLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEG 567
Query: 585 TIRYNLDPFGRC-HDTELWDALEKSHLKSKVVTMRSKLDSDVQ--GDQLSLGEKQLLCLA 641
T+R NL + D +L A + + + + + D+++ G LS G++Q L +A
Sbjct: 568 TVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIA 627
Query: 642 RALLR 646
RAL+R
Sbjct: 628 RALVR 632
Score = 51.9 bits (125), Expect = 9e-07
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 434 QGTIKFKNVSLRY-RDNWPLVLANVSFRINHGENIGIVGRTGAGKSSL--LVALFRLVEL 490
G ++ +N++ Y PL+ N S + G+ + +VG +G+GKS++ LVA L +
Sbjct: 475 SGYVELRNITFGYSPLEPPLI-ENFSLTLQPGQRVALVGGSGSGKSTIAKLVA--GLYQP 531
Query: 491 SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV 528
SG+I D + E L + ++++ QD LF G V
Sbjct: 532 WSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTV 569
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 53.8 bits (130), Expect = 7e-08
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 456 NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 502
VSF I GE +G+VG +G GKS+L + L E +SG+I + DI
Sbjct: 31 GVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDI 77
Score = 36.0 bits (84), Expect = 0.040
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 560
G+VG +G GKS+L + L E +SG+I + DI
Sbjct: 43 GLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDI 77
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 53.2 bits (128), Expect = 1e-07
Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 18/165 (10%)
Query: 493 GQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVEL---- 548
G+I + D D+ + + L+ I ++ V ++G +G GKS+ L L R+ +L
Sbjct: 2 GKISVKDLDLFYGDFQALKKINLDIEENQVT--ALIGPSGCGKSTFLRTLNRMNDLIPSV 59
Query: 549 -SSGQIKIDDFDI--ASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCH----DTEL 601
G++ +D DI + +++ LR R+ ++ Q P F +I N+ R H +L
Sbjct: 60 KIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKL 119
Query: 602 WDALEKSHLKSKVV--TMRSKLDSDVQGDQLSLGEKQLLCLARAL 644
+ +EKS LK + ++ +L G LS G++Q LC+ARAL
Sbjct: 120 DEIVEKS-LKGAALWDEVKDRLKKSALG--LSGGQQQRLCIARAL 161
Score = 42.4 bits (100), Expect = 4e-04
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL---- 490
G I K++ L Y D L ++ I + ++G +G GKS+ L L R+ +L
Sbjct: 2 GKISVKDLDLFYGDFQ--ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSV 59
Query: 491 -SSGQIKIDDFDI--ASVELETLRSRLSVIPQDPVLF 524
G++ +D DI + +++ LR R+ ++ Q P F
Sbjct: 60 KIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPF 96
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 52.2 bits (126), Expect = 1e-07
Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 21/132 (15%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE----LETLRSRLSVIPQDPVLF 582
I+G +G+GKS+LL + L + SGQ+ ++ + + + R +L + Q+ L
Sbjct: 29 IIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASKFRREKLGYLFQNFALI 88
Query: 583 -NGTIRYNLD-PF------GRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGE 634
N T+ NLD + + +ALEK V + KL + +LS GE
Sbjct: 89 ENETVEENLDLGLKYKKLSKKEKREKKKEALEK-------VGLNLKLKQKIY--ELSGGE 139
Query: 635 KQLLCLARALLR 646
+Q + LARA+L+
Sbjct: 140 QQRVALARAILK 151
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 52.0 bits (125), Expect = 2e-07
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+ +N+ +Y D + VSFR+ GE G++G GAGK++ + L L++ +SG+
Sbjct: 1 IEVENLVKKYGDF--EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRAT 58
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFNGIVGR 530
+ D+ E +R R+ ++ QD + + + G
Sbjct: 59 VAGHDVVR-EPREVRRRIGIVFQDLSVDDELTGW 91
Score = 38.9 bits (91), Expect = 0.004
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG- 584
G++G GAGK++ + L L++ +SG+ + D+ E +R R+ ++ QD + +
Sbjct: 30 GLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRRIGIVFQDLSVDDEL 88
Query: 585 TIRYNLDPFGR 595
T NL R
Sbjct: 89 TGWENLYIHAR 99
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 52.3 bits (126), Expect = 2e-07
Identities = 26/63 (41%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 454 LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELETL 510
+ +VS + GE I+G +G+GKS+LL + RL+E +SG++ ID DIA++ EL L
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELREL 99
Query: 511 RSR 513
R +
Sbjct: 100 RRK 102
Score = 51.5 bits (124), Expect = 5e-07
Identities = 41/129 (31%), Positives = 64/129 (49%), Gaps = 19/129 (14%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELETLRSR--------LSVI 575
I+G +G+GKS+LL + RL+E +SG++ ID DIA++ EL LR + +++
Sbjct: 55 IMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALL 114
Query: 576 PQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEK 635
P VL N + + L+ G A E L + + D+LS G +
Sbjct: 115 PHRTVLEN--VAFGLEVQGVPRAEREERAAEALEL------VGLEGWEHKYPDELSGGMQ 166
Query: 636 QLLCLARAL 644
Q + LARAL
Sbjct: 167 QRVGLARAL 175
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 52.4 bits (126), Expect = 2e-07
Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 437 IKFKNVSLRYRDNWP-LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
I+ KN++ +Y+++ L +VSF + GE + I+G G+GKS+ + + L+E SGQI
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 496 KIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRT 531
ID + + +R ++ ++ Q+P N VG T
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPD--NQFVGAT 98
Score = 30.1 bits (68), Expect = 4.0
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP 579
I+G G+GKS+ + + L+E SGQI ID + + +R ++ ++ Q+P
Sbjct: 38 IIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNP 90
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 51.9 bits (125), Expect = 2e-07
Identities = 42/131 (32%), Positives = 67/131 (51%), Gaps = 14/131 (10%)
Query: 526 GIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIAS--VELETLRSRLSVIPQD 578
++G +G GKS+LL +L R+ +L G++ D DI +++ LR R+ ++ Q
Sbjct: 31 ALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQK 90
Query: 579 PVLFNGTIRYNLDPFG-RCHDT----ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLG 633
P F +I N+ +G R H EL + +E+S LK + K LS G
Sbjct: 91 PNPFPMSIYDNI-AYGPRLHGIKDKKELDEIVEES-LKKAALWDEVKDRLHDSALGLSGG 148
Query: 634 EKQLLCLARAL 644
++Q LC+ARAL
Sbjct: 149 QQQRLCIARAL 159
Score = 46.9 bits (112), Expect = 1e-05
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 9/96 (9%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----S 491
I+ +N++L Y + L N++ I + ++G +G GKS+LL +L R+ +L
Sbjct: 2 IEIENLNLFYGEK--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRI 59
Query: 492 SGQIKIDDFDIAS--VELETLRSRLSVIPQDPVLFN 525
G++ D DI +++ LR R+ ++ Q P F
Sbjct: 60 EGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP 95
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 50.5 bits (122), Expect = 3e-07
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ + ++ R+ L VS + GE ++G GAGKS+L+ L L + SG+I
Sbjct: 1 LELRGITKRFGGV--KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL 58
Query: 497 ID--DFDIASVELETLRSRLSVIPQDPV 522
+D + AS + R+ ++++ Q V
Sbjct: 59 VDGKEVSFASP-RDARRAGIAMVYQLSV 85
Score = 35.1 bits (82), Expect = 0.040
Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 55/126 (43%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKID--DFDIASVELETLRSRLSVIPQDPVLFN 583
++G GAGKS+L+ L L + SG+I +D + AS + R+ ++++ Q
Sbjct: 30 ALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASP-RDARRAGIAMVYQ------ 82
Query: 584 GTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARA 643
LS+GE+Q++ +ARA
Sbjct: 83 ----------------------------------------------LSVGERQMVEIARA 96
Query: 644 LLRKTK 649
L R +
Sbjct: 97 LARNAR 102
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 52.4 bits (126), Expect = 3e-07
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 457 VSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516
V+F++ GE G +G GAGK++ + L L+ +SG ++ +D+ E +R + +
Sbjct: 12 VNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGI 70
Query: 517 IPQDPVLFNGIVGR 530
+PQ + + GR
Sbjct: 71 VPQYASVDEDLTGR 84
Score = 47.0 bits (112), Expect = 2e-05
Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 4/121 (3%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG- 584
G +G GAGK++ + L L+ +SG ++ +D+ E +R + ++PQ +
Sbjct: 23 GFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDL 81
Query: 585 TIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARAL 644
T R NL+ GR + +A E++ ++ + D V S G ++ L +A +L
Sbjct: 82 TGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVG--TYSGGMRRRLDIAASL 139
Query: 645 L 645
+
Sbjct: 140 I 140
>gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region.
This family represents a unit of six transmembrane
helices. Many members of the ABC transporter family
(pfam00005) have two such regions.
Length = 274
Score = 52.3 bits (126), Expect = 3e-07
Identities = 29/156 (18%), Positives = 67/156 (42%), Gaps = 2/156 (1%)
Query: 229 LRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSP 288
L FQ++ +++ F+++ + L LL I L L+S V +R+L R E + +
Sbjct: 119 LGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAK 178
Query: 289 IFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIA 348
S ++SG+ + F +E+ + R+ + ++ ++ +++ ++
Sbjct: 179 AGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLS 238
Query: 349 MAIIT--GLTVAFHGSVSPALAGLALTYASHVTGLL 382
A+ G + G +S L+ ++G L
Sbjct: 239 YALALWFGAYLVISGGLSVGTVFAFLSLGLQLSGPL 274
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 51.2 bits (123), Expect = 3e-07
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 437 IKFKNVSLRYRDNWPL--VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
+K +N+ RY++ VL VS I GE + IVG +G+GKS+LL L L +SG+
Sbjct: 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGE 61
Query: 495 IKIDDFDIASV---ELETLRSR 513
+ + ++ + E LR++
Sbjct: 62 VLFNGQSLSKLSSNERAKLRNK 83
Score = 34.6 bits (80), Expect = 0.100
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 21/136 (15%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELETLRSR-LSVI------ 575
IVG +G+GKS+LL L L +SG++ + ++ + E LR++ L I
Sbjct: 35 AIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHL 94
Query: 576 -PQDPVLFNGTIRYNLDPFGRCHDTEL-WDALEKSHLKSKVVTMRSKLDSDVQGDQLSLG 633
P L N + + E ++ LEK L+ ++ S +LS G
Sbjct: 95 LPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPS---------ELSGG 145
Query: 634 EKQLLCLARALLRKTK 649
E+Q + +ARAL+ +
Sbjct: 146 ERQRVAIARALVNQPS 161
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 52.1 bits (125), Expect = 4e-07
Identities = 47/171 (27%), Positives = 75/171 (43%), Gaps = 36/171 (21%)
Query: 498 DDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSS-----GQ 552
DD + V ++ IP+ V ++G +G GKS+ L L R+ + G
Sbjct: 57 DDHALKGVSMD--------IPEKSV--TALIGPSGCGKSTFLRCLNRMNDRIKAARIDGS 106
Query: 553 IKIDDFDI--ASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCH------------- 597
+++D DI V L LR R+ ++ Q P F +IR N+ R H
Sbjct: 107 VELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLG 166
Query: 598 --DTELWDALEKSHLKSKVV--TMRSKLDSDVQGDQLSLGEKQLLCLARAL 644
D + D L + L+ + + +LD + G LS G++Q LC+AR L
Sbjct: 167 RDDKDAEDELVERSLRQAALWDEVNDRLDDNALG--LSGGQQQRLCIARCL 215
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 51.2 bits (123), Expect = 4e-07
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+FKNVS + VL N+ I+ GE + I+G +G+GKS+LL + +L E++SG +
Sbjct: 2 IEFKNVSKHFGPT--QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLI 59
Query: 497 IDDFDI 502
+D +
Sbjct: 60 VDGLKV 65
Score = 31.6 bits (72), Expect = 1.0
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 560
I+G +G+GKS+LL + +L E++SG + +D +
Sbjct: 32 IIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKV 65
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 51.5 bits (123), Expect = 4e-07
Identities = 50/167 (29%), Positives = 87/167 (52%), Gaps = 24/167 (14%)
Query: 494 QIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELS---- 549
+I+I D ++ ++E L IP + + ++G +G+GKS+LL RL+EL
Sbjct: 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTI--TALMGPSGSGKSTLLRVFNRLIELYPEAR 60
Query: 550 -SGQIKIDDFDIASVELETLRSRLSVIPQDP-------VLFNGTIRYNLDPFGRCHDTEL 601
SG++ +D DI +++ LR R+ ++ Q P + N + L+ + EL
Sbjct: 61 VSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVK-SKKEL 119
Query: 602 WD----ALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARAL 644
+ ALEK+ L +V + +LD+ +LS G++Q LC+ARAL
Sbjct: 120 QERVRWALEKAQLWDEV---KDRLDA--PAGKLSGGQQQRLCIARAL 161
Score = 42.6 bits (100), Expect = 4e-04
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS-----SGQIKIDDFDIASVEL 507
VL V+ I ++G +G+GKS+LL RL+EL SG++ +D DI +++
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77
Query: 508 ETLRSRLSVIPQDP 521
LR R+ ++ Q P
Sbjct: 78 IELRRRVQMVFQIP 91
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 51.3 bits (123), Expect = 4e-07
Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 16/131 (12%)
Query: 527 IVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIASVELE--TLRSRLSVIPQDP 579
++G +G GKS+ L L R+ +L G+I +D +I ++ LR R+ ++ Q P
Sbjct: 37 LIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKP 96
Query: 580 VLFNGTI----RYNLDPFGRCHDTELWDALEKSHLKSKVV--TMRSKLDSDVQGDQLSLG 633
F +I Y L G L + +E+S L+ + ++ +L G LS G
Sbjct: 97 NPFPKSIFENVAYGLRVNGVKDKAYLAERVERS-LRHAALWDEVKDRLHESALG--LSGG 153
Query: 634 EKQLLCLARAL 644
++Q LC+ARAL
Sbjct: 154 QQQRLCIARAL 164
Score = 39.8 bits (93), Expect = 0.003
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 440 KNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----SSGQ 494
+ +S Y D L ++S + ++G +G GKS+ L L R+ +L G+
Sbjct: 10 RGLSFFYGDF--QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGE 67
Query: 495 IKIDDFDIASVELE--TLRSRLSVIPQDPVLF 524
I +D +I ++ LR R+ ++ Q P F
Sbjct: 68 ILLDGENIYDPHVDVVELRRRVGMVFQKPNPF 99
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 51.6 bits (124), Expect = 5e-07
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 7/92 (7%)
Query: 437 IKFKNVSLRYRDNWP---LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493
I F+ V RY+ P L +V+ I G + I+G TG+GKS+LL L L++ +SG
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62
Query: 494 QIKIDDFDIAS----VELETLRSRLSVIPQDP 521
+ I + I + +L+ LR ++ ++ Q P
Sbjct: 63 TVTIGERVITAGKKNKKLKPLRKKVGIVFQFP 94
Score = 38.8 bits (91), Expect = 0.006
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS----VELETLRSRLSVIPQDP--V 580
I+G TG+GKS+LL L L++ +SG + I + I + +L+ LR ++ ++ Q P
Sbjct: 38 IIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQ 97
Query: 581 LFNGTI 586
LF T+
Sbjct: 98 LFEETV 103
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 51.0 bits (122), Expect = 5e-07
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
T+ KN++ Y+ V+ +VS +N GE +G++G GAGK++ + +V +G I
Sbjct: 3 TLTAKNLAKAYKGR--RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNI 60
Query: 496 KIDDFDIASVEL-ETLRSRLSVIPQDPVLF 524
IDD DI+ + L R + +PQ+ +F
Sbjct: 61 IIDDEDISLLPLHARARRGIGYLPQEASIF 90
Score = 42.2 bits (99), Expect = 4e-04
Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 30/160 (18%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL-ETLRSRLSVIPQDPVLFNG 584
G++G GAGK++ + +V +G I IDD DI+ + L R + +PQ+ +F
Sbjct: 33 GLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRR 92
Query: 585 -----------TIRYNLDPFGRC-HDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSL 632
IR +L R EL + HL+ D G LS
Sbjct: 93 LSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLR------------DSMGQSLSG 140
Query: 633 GEKQLLCLARALLRKTKKKKKSGVNITRPVTSCDKVLVMD 672
GE++ + +ARAL K + + P D + V+D
Sbjct: 141 GERRRVEIARALAANPKF-----ILLDEPFAGVDPISVID 175
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 50.4 bits (121), Expect = 5e-07
Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 12/122 (9%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
+ G G GK++LL L L+ SG+++ + +A E R+ L + + +
Sbjct: 31 VTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSA 90
Query: 587 RYNLD---PFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARA 643
NL + DAL L D+ QLS G+++ L LAR
Sbjct: 91 LENLHFWAAIHGGAQRTIEDALAAVGLTGF---------EDLPAAQLSAGQQRRLALARL 141
Query: 644 LL 645
L
Sbjct: 142 WL 143
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 51.6 bits (124), Expect = 5e-07
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 457 VSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKI---DDFDIASVELETLRSR 513
V+ R+ GE +G+VG +G GKS+ A+ LV+ + G++ D + E +RS
Sbjct: 40 VTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSD 99
Query: 514 LSVIPQDP 521
+ +I QDP
Sbjct: 100 IQMIFQDP 107
Score = 40.5 bits (95), Expect = 0.002
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKI---DDFDIASVELETLRSRLSVIPQDP 579
G+VG +G GKS+ A+ LV+ + G++ D + E +RS + +I QDP
Sbjct: 51 GVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDP 107
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 52.4 bits (126), Expect = 6e-07
Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELET 509
V+ N+SF + GE +G+VG +G+GKS+ +AL RL+ S G+I D + ++ +L
Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLP 359
Query: 510 LRSRLSVIPQDP 521
+R R+ V+ QDP
Sbjct: 360 VRHRIQVVFQDP 371
Score = 39.7 bits (93), Expect = 0.005
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 9/95 (9%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRL-----VEL 490
I+ +V+ R + V+ +VS +I GE + +VG +G+GKS +++ RL V
Sbjct: 7 AIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVY 66
Query: 491 SSGQIKIDDFDIASVELETLR----SRLSVIPQDP 521
SG I+ + +TLR +++++I Q+P
Sbjct: 67 PSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101
Score = 38.5 bits (90), Expect = 0.011
Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 4/57 (7%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELETLRSRLSVIPQDP 579
G+VG +G+GKS+ +AL RL+ S G+I D + ++ +L +R R+ V+ QDP
Sbjct: 316 GLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDP 371
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 50.8 bits (122), Expect = 6e-07
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS 512
+L VS + GE + I+G GAGKS+LL AL + SG++ ++ + S E L
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 513 RLSVIPQDPVL 523
+V+PQ+ L
Sbjct: 76 HRAVLPQNSSL 86
Score = 44.7 bits (106), Expect = 7e-05
Identities = 37/133 (27%), Positives = 54/133 (40%), Gaps = 25/133 (18%)
Query: 525 NGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-FN 583
I+G GAGKS+LL AL + SG++ ++ + S E L +V+PQ+ L F
Sbjct: 30 LAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFP 89
Query: 584 GT----IRYNLDPFGRCHDTE-----LWDALEK---SHLKSKVVTMRSKLDSDVQGDQLS 631
T ++ P + E AL S L + LS
Sbjct: 90 FTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRT------------LS 137
Query: 632 LGEKQLLCLARAL 644
GE+Q + LAR L
Sbjct: 138 GGEQQRVQLARVL 150
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 49.9 bits (120), Expect = 6e-07
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 11/96 (11%)
Query: 436 TIKFKNVSLRYRDNWPL-----VLANVSFRINHGENIGIVGRTGAGKSSLLVAL--FRLV 488
T+ F+N+++ + P +L NVS + GE I+G +GAGKS+LL AL R
Sbjct: 3 TLSFRNLTV-TVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTG 61
Query: 489 ELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF 524
SG++ I+ ++ + R + +PQD +L
Sbjct: 62 LGVSGEVLINGR---PLDKRSFRKIIGYVPQDDILH 94
Score = 41.0 bits (97), Expect = 7e-04
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 524 FNGIVGRTGAGKSSLLVAL--FRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL 581
I+G +GAGKS+LL AL R SG++ I+ ++ + R + +PQD +L
Sbjct: 37 LTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGR---PLDKRSFRKIIGYVPQDDIL 93
Query: 582 F-NGTIRYNLD 591
T+R L
Sbjct: 94 HPTLTVRETLM 104
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 50.7 bits (121), Expect = 7e-07
Identities = 44/163 (26%), Positives = 83/163 (50%), Gaps = 16/163 (9%)
Query: 494 QIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSS--- 550
+I++++ + + L++ IP++ V ++G +G GKS+ + L R+ +L
Sbjct: 3 RIEVENLNTYFDDAHILKNVNLDIPKNSV--TALIGPSGCGKSTFIRTLNRMNDLIPGFR 60
Query: 551 --GQIKIDDFDI--ASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALE 606
G I +D DI +V++ LR ++ ++ Q P F +I N+ R H + D +E
Sbjct: 61 HEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIE 120
Query: 607 K---SHLKSKVV--TMRSKLDSDVQGDQLSLGEKQLLCLARAL 644
+ LK+ + ++ KLD G LS G++Q LC+AR +
Sbjct: 121 ERVEESLKAAALWDEVKDKLDKSALG--LSGGQQQRLCIARTI 161
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 51.4 bits (123), Expect = 9e-07
Identities = 45/128 (35%), Positives = 65/128 (50%), Gaps = 17/128 (13%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS---VEL-ETLRSRLSVIPQDPVLF 582
I+G +G+GKS+ + L RL+E ++GQI ID +I VEL E R ++ ++ Q LF
Sbjct: 24 IMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83
Query: 583 -NGTIRYNLDPFGRCHDTEL--WDA---LEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQ 636
+ TI N G EL W EK+ K+V + D+LS G +Q
Sbjct: 84 PHMTILQNTS-LG----PELLGWPEQERKEKALELLKLVGLEEYEHR--YPDELSGGMQQ 136
Query: 637 LLCLARAL 644
+ LARAL
Sbjct: 137 RVGLARAL 144
Score = 51.0 bits (122), Expect = 1e-06
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 456 NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS---VEL-ETLR 511
+ I GE I+G +G+GKS+ + L RL+E ++GQI ID +I VEL E R
Sbjct: 11 DADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRR 70
Query: 512 SRLSVIPQDPVLF 524
++ ++ Q LF
Sbjct: 71 KKIGMVFQQFALF 83
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 51.3 bits (123), Expect = 1e-06
Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 17/139 (12%)
Query: 432 PRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS 491
P T++ +NV Y+DN + ++ I GE + ++G G+GKS+L + L L +
Sbjct: 318 PDWKTLELRNVRFAYQDN-AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQ 376
Query: 492 SGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTG----------------AGK 535
SG+I +D +++ +LE R S + D LF+ ++G G A K
Sbjct: 377 SGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHK 436
Query: 536 SSLLVALFRLVELSSGQIK 554
+SL F ++LS+GQ K
Sbjct: 437 TSLNDGRFSNLKLSTGQKK 455
Score = 42.1 bits (99), Expect = 9e-04
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 10/129 (7%)
Query: 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIP 576
I + ++F ++G G+GKS+L + L L + SG+I +D +++ +LE R S +
Sbjct: 346 IKRGELVF--LIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVF 403
Query: 577 QDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQ 636
D LF+ + + E W L++ L K D +LS G+K+
Sbjct: 404 SDYHLFDQLL--GPEGKASPQLIEKW--LQRLELAHKTSLN----DGRFSNLKLSTGQKK 455
Query: 637 LLCLARALL 645
L L ALL
Sbjct: 456 RLALLLALL 464
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 50.0 bits (120), Expect = 1e-06
Identities = 24/69 (34%), Positives = 39/69 (56%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS 512
L +S I G+ + ++G GAGKS+LL A+ ++ +SGQI ID D+ + +
Sbjct: 21 ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN 80
Query: 513 RLSVIPQDP 521
L+ + QDP
Sbjct: 81 LLARVFQDP 89
Score = 41.5 bits (98), Expect = 7e-04
Identities = 39/146 (26%), Positives = 59/146 (40%), Gaps = 31/146 (21%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-- 581
F ++G GAGKS+LL A+ ++ +SGQI ID D+ + + L+ + QDP+
Sbjct: 34 FVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGT 93
Query: 582 -FNGTIRYNLDPFGRCHDTELWD----------ALEKSHLKSKVVTMRS-------KLDS 623
TI NL L + AL + S + +L
Sbjct: 94 APELTIEENL---------ALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSD 144
Query: 624 DVQGDQLSLGEKQLLCLARALLRKTK 649
+ LS G++Q L L A L K
Sbjct: 145 RI--GLLSGGQRQALSLLMATLHPPK 168
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 49.8 bits (120), Expect = 1e-06
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 441 NVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDF 500
N+S RY V+ VS + GE +G++G GAGK++ + LV+ SG+I +D
Sbjct: 5 NLSKRYGKRK--VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQ 62
Query: 501 DIASVELETLRSRLSVI--PQDPVLF 524
DI + + R+RL + PQ+ +F
Sbjct: 63 DITKLPMHK-RARLGIGYLPQEASIF 87
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 48.7 bits (117), Expect = 1e-06
Identities = 46/157 (29%), Positives = 62/157 (39%), Gaps = 48/157 (30%)
Query: 495 IKIDDFDIASVELETLRSRLS--VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQ 552
I++++ +A+ + L LS + P D +L I G +G GKSSL AL L SG+
Sbjct: 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLL---ITGPSGTGKSSLFRALAGLWPWGSGR 57
Query: 553 IKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKS 612
I + L +PQ P L GT+R L + WD
Sbjct: 58 IGM-----------PEGEDLLFLPQRPYLPLGTLREQL-----IY---PWD--------- 89
Query: 613 KVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTK 649
D LS GE+Q L AR LL K K
Sbjct: 90 ---------------DVLSGGEQQRLAFARLLLHKPK 111
Score = 47.9 bits (115), Expect = 2e-06
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+ +N+SL D L+ ++SF I G+ + I G +G GKSSL AL L SG+I
Sbjct: 1 IELENLSLATPDGRVLL-KDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIG 59
Query: 497 I 497
+
Sbjct: 60 M 60
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 50.2 bits (120), Expect = 1e-06
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 436 TIKFKNVSLRYRDNWPL---VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS 492
TI+F NVS Y+ P + +V+ G+ IVG+TG+GKS+L+ + L++ ++
Sbjct: 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTT 61
Query: 493 GQIKIDDFDIAS----VELETLRSRLSVIPQDP 521
G + +DD I + +R R+ ++ Q P
Sbjct: 62 GTVTVDDITITHKTKDKYIRPVRKRIGMVFQFP 94
Score = 37.1 bits (86), Expect = 0.022
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS----VELETLRSRLSVIPQDP--V 580
IVG+TG+GKS+L+ + L++ ++G + +DD I + +R R+ ++ Q P
Sbjct: 38 IVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQ 97
Query: 581 LFNGTI 586
LF T+
Sbjct: 98 LFEDTV 103
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 49.6 bits (118), Expect = 2e-06
Identities = 44/169 (26%), Positives = 84/169 (49%), Gaps = 11/169 (6%)
Query: 490 LSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELS 549
++ QIK+++ ++ E + L++ IP++ V ++G +G GKS+ + L R+ +L
Sbjct: 8 VAQPQIKVENLNLWYGEKQALKNVSMQIPKNSV--TALIGPSGCGKSTFIRCLNRMNDLI 65
Query: 550 S-----GQIKIDDFDI--ASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCH--DTE 600
G++ I+ DI V++ LR + ++ Q P F +I N+ R H + +
Sbjct: 66 KNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKK 125
Query: 601 LWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTK 649
D + ++ L+S + + LS G++Q LC+AR L K K
Sbjct: 126 DLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPK 174
Score = 40.4 bits (94), Expect = 0.002
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS- 492
Q IK +N++L Y + L NVS +I ++G +G GKS+ + L R+ +L
Sbjct: 10 QPQIKVENLNLWYGEKQ--ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKN 67
Query: 493 ----GQIKIDDFDI--ASVELETLRSRLSVIPQDPVLF 524
G++ I+ DI V++ LR + ++ Q P F
Sbjct: 68 CRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPF 105
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 49.6 bits (119), Expect = 2e-06
Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 24/144 (16%)
Query: 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDI--ASVELETLR 569
I ++ V +G +G GKS+LL R+ EL + G+I +D +I ++ LR
Sbjct: 36 IAKNQV--TAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLR 93
Query: 570 SRLSVIPQDPVLFNGTIRYNLDPFG-RCH--------DTELWDALEKSHLKSKVVTMRSK 620
+++ ++ Q P F +I N+ FG R D + AL K+ L ++V + K
Sbjct: 94 AKVGMVFQKPTPFPMSIYDNI-AFGVRLFEKLSRAEMDERVEWALTKAALWNEV---KDK 149
Query: 621 LDSDVQGDQLSLGEKQLLCLARAL 644
L G LS G++Q LC+AR +
Sbjct: 150 LHQ--SGYSLSGGQQQRLCIARGI 171
Score = 37.3 bits (87), Expect = 0.016
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 454 LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDI--ASVE 506
L N++ I + +G +G GKS+LL R+ EL + G+I +D +I +
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88
Query: 507 LETLRSRLSVIPQDPVLF 524
+ LR+++ ++ Q P F
Sbjct: 89 IALLRAKVGMVFQKPTPF 106
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 50.7 bits (122), Expect = 2e-06
Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 8/125 (6%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
T++ +NV+ Y+DN + ++ I GE + ++G G+GKS+L + L L + SG+I
Sbjct: 322 TLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380
Query: 496 KIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVA--LFRL-----VEL 548
+D + + + E R S + D LF+ ++G G + LV L RL +EL
Sbjct: 381 LLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLEL 440
Query: 549 SSGQI 553
G+I
Sbjct: 441 EDGRI 445
Score = 37.6 bits (88), Expect = 0.023
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 9/122 (7%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
++G G+GKS+L + L L + SG+I +D + + + E R S + D LF+
Sbjct: 354 LIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQL- 412
Query: 587 RYNLDPFGRCHDTELWDA-LEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALL 645
L P G+ + L + LE+ + K+ D + +LS G+K+ L L AL
Sbjct: 413 ---LGPEGKPANPALVEKWLERLKMAHKL----ELEDGRISNLKLSKGQKKRLALLLALA 465
Query: 646 RK 647
+
Sbjct: 466 EE 467
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 49.2 bits (118), Expect = 2e-06
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-F 582
F ++G GAGKS+L L RL GQI + D+ L RL V+ Q P L
Sbjct: 29 FVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALA-RLGVVFQQPTLDL 87
Query: 583 NGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLAR 642
+ ++R NL H +A + + + + D V+ +L+ G ++ + +AR
Sbjct: 88 DLSVRQNLRYHAALHGLSRAEARARIAELLARLGLAERADDKVR--ELNGGHRRRVEIAR 145
Query: 643 ALL 645
ALL
Sbjct: 146 ALL 148
Score = 48.8 bits (117), Expect = 2e-06
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS 512
L +VSF + G + ++G GAGKS+L L RL GQI + D+ L
Sbjct: 16 ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALA- 74
Query: 513 RLSVIPQDPVL 523
RL V+ Q P L
Sbjct: 75 RLGVVFQQPTL 85
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 49.5 bits (118), Expect = 2e-06
Identities = 44/163 (26%), Positives = 84/163 (51%), Gaps = 17/163 (10%)
Query: 494 QIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELS---- 549
+ I++ D+ E + L+S IP V ++G +G GKS+LL L R+ +L
Sbjct: 3 KFNIENLDLFYGENQALKSINLPIPARQV--TALIGPSGCGKSTLLRCLNRMNDLIEGVK 60
Query: 550 -SGQIKIDDFDI-ASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGR----CHDTELWD 603
+G++ +D DI ++++ LR ++ ++ Q P F +I N+ +G D ++ D
Sbjct: 61 ITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENV-AYGLRAQGIKDKKVLD 119
Query: 604 ALEKSHLKSKVV--TMRSKLDSDVQGDQLSLGEKQLLCLARAL 644
+ + L+ + ++ +L S G LS G++Q LC+AR +
Sbjct: 120 EVVERSLRGAALWDEVKDRLKSHAFG--LSGGQQQRLCIARTI 160
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 48.8 bits (117), Expect = 2e-06
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ +NV+ R+ L ++SF + GE G++G GAGK++ + + ++ SG++
Sbjct: 1 LEVENVTKRFGRV--TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVL 58
Query: 497 IDD 499
D
Sbjct: 59 FDG 61
Score = 38.0 bits (89), Expect = 0.007
Identities = 24/123 (19%), Positives = 56/123 (45%), Gaps = 11/123 (8%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDD--FDIASVELETLRSRLSVIPQDPVLF- 582
G++G GAGK++ + + ++ SG++ D DIA+ R+R+ +P++ L+
Sbjct: 30 GLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAA------RNRIGYLPEERGLYP 83
Query: 583 NGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLAR 642
+ L + + +A + + + + + V ++LS G +Q +
Sbjct: 84 KMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRV--EELSKGNQQKVQFIA 141
Query: 643 ALL 645
A++
Sbjct: 142 AVI 144
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 48.9 bits (116), Expect = 2e-06
Identities = 44/142 (30%), Positives = 63/142 (44%), Gaps = 34/142 (23%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDD--FDIASVELETLRSRLSV--IPQDPVLF 582
IVG+ G GKSSLL+A+ ++ G++ + S E R+R SV Q P L
Sbjct: 32 IVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL 91
Query: 583 NGTIRYNL---DPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQ----GDQ------ 629
N T+ N+ PF + + K VT L D+ GDQ
Sbjct: 92 NATVEENITFGSPFNK--------------QRYKAVTDACSLQPDIDLLPFGDQTEIGER 137
Query: 630 ---LSLGEKQLLCLARALLRKT 648
LS G++Q +C+ARAL + T
Sbjct: 138 GINLSGGQRQRICVARALYQNT 159
Score = 41.5 bits (97), Expect = 5e-04
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 454 LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD--FDIASVELETLR 511
L+N++ RI G+ IVG+ G GKSSLL+A+ ++ G++ + S E R
Sbjct: 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76
Query: 512 SRLSV--IPQDPVLFNGIV 528
+R SV Q P L N V
Sbjct: 77 NRYSVAYAAQKPWLLNATV 95
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 50.6 bits (122), Expect = 2e-06
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ + +S + L VS + GE ++G GAGKS+L+ L + SG+I
Sbjct: 9 LELRGISKSFGGVK--ALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEIL 66
Query: 497 IDD--FDIASVELETLRSRLSVIPQDPVLF 524
ID +S + L + ++ + Q+ L
Sbjct: 67 IDGKPVAFSSP-RDALAAGIATVHQELSLV 95
Score = 46.4 bits (111), Expect = 4e-05
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 431 WPRQGTIKFKNVSLRYRD-NWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE 489
+P L R+ + + +VSF + GE +GI G GAG++ L ALF
Sbjct: 251 FPEPPEEGIGEPVLEVRNLSGGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP 310
Query: 490 LSSGQIKIDDFDIA 503
SSG+I +D +
Sbjct: 311 ASSGEILLDGKPVR 324
Score = 42.5 bits (101), Expect = 6e-04
Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 22/137 (16%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDD--FDIASVELETLRSRLSVIPQDPVLF- 582
++G GAGKS+L+ L + SG+I ID +S + L + ++ + Q+ L
Sbjct: 38 ALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSP-RDALAAGIATVHQELSLVP 96
Query: 583 NGTI-------RYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQ---GDQLSL 632
N ++ R FG A+ + +++ + R LD D GD LS+
Sbjct: 97 NLSVAENIFLGREPTRRFGLID----RKAMRR---RARELLARLGLDIDPDTLVGD-LSI 148
Query: 633 GEKQLLCLARALLRKTK 649
++Q++ +ARAL +
Sbjct: 149 AQRQMVEIARALSFDAR 165
Score = 38.3 bits (90), Expect = 0.013
Identities = 33/139 (23%), Positives = 55/139 (39%), Gaps = 21/139 (15%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI------ASVEL------ETLRSRLS 573
GI G GAG++ L ALF SSG+I +D + +++ E R
Sbjct: 289 GIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPE-DRKSEG 347
Query: 574 VIPQDPVLFNGTIRYNLDPFGRCH---DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQL 630
++ + N T+ +L F R + E+ + ++ T + + L
Sbjct: 348 LVLDMSIAENITL-ASLRRFSRRGLIDRRKERALAERYIRRLRIKTPS--PEQPIGT--L 402
Query: 631 SLGEKQLLCLARALLRKTK 649
S G +Q + LAR L K
Sbjct: 403 SGGNQQKVVLARWLATDPK 421
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 49.7 bits (118), Expect = 2e-06
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 7/92 (7%)
Query: 437 IKFKNVSLRYRDNWPLV---LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493
IKF+ V+ Y+ N P L ++ + G ++G TG+GKS+LL L L++ + G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 494 QIKIDDFDIASV----ELETLRSRLSVIPQDP 521
++ + D ++S E++ +R ++ V+ Q P
Sbjct: 62 KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFP 93
Score = 37.8 bits (87), Expect = 0.012
Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV----ELETLRSRLSVIPQDP 579
+ ++G TG+GKS+LL L L++ + G++ + D ++S E++ +R ++ V+ Q P
Sbjct: 34 YTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFP 93
Query: 580 --VLFNGTI 586
LF T+
Sbjct: 94 ESQLFEETV 102
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 49.2 bits (117), Expect = 2e-06
Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 18/132 (13%)
Query: 527 IVGRTGAGKSSLLVALFRL--------VELSSGQIKIDDFDI--ASVELETLRSRLSVIP 576
I+G +G GK++LL ++ R+ VE G+I DI +++ R ++ ++
Sbjct: 34 IIGPSGCGKTTLLRSINRMNDHIPGFRVE---GKIYFKGQDIYDPQLDVTEYRKKVGMVF 90
Query: 577 QDPVLFNGTIRYNLDPFG-RCH---DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSL 632
Q P F +I N+ FG R H D + + LK + K + + G +LS
Sbjct: 91 QKPTPFPMSIYDNV-AFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSG 149
Query: 633 GEKQLLCLARAL 644
G++Q LC+ARAL
Sbjct: 150 GQQQRLCIARAL 161
Score = 43.0 bits (101), Expect = 2e-04
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRL--------V 488
I+ +N S Y + + NV+ +I + I+G +G GK++LL ++ R+ V
Sbjct: 4 IEIENFSAYYGEK--KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRV 61
Query: 489 ELSSGQIKIDDFDI--ASVELETLRSRLSVIPQDPVLF 524
E G+I DI +++ R ++ ++ Q P F
Sbjct: 62 E---GKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPF 96
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 50.2 bits (120), Expect = 2e-06
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 440 KNVSLRYRDNWPLVLA--NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKI 497
+N+++ + + A N+SF + GE + IVG +G+GKS +AL RL+E + G ++
Sbjct: 16 ENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQC 75
Query: 498 D 498
D
Sbjct: 76 D 76
Score = 49.9 bits (119), Expect = 4e-06
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 7/71 (9%)
Query: 456 NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI-----KIDDFDIASVELETL 510
VSF + GE + +VG +G+GKS+ AL RLVE G+I +ID ++ +L+ L
Sbjct: 342 KVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRID--TLSPGKLQAL 399
Query: 511 RSRLSVIPQDP 521
R + I QDP
Sbjct: 400 RRDIQFIFQDP 410
Score = 39.5 bits (92), Expect = 0.007
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 7/58 (12%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQI-----KIDDFDIASVELETLRSRLSVIPQDP 579
+VG +G+GKS+ AL RLVE G+I +ID ++ +L+ LR + I QDP
Sbjct: 355 LVGESGSGKSTTGRALLRLVESQGGEIIFNGQRID--TLSPGKLQALRRDIQFIFQDP 410
Score = 34.4 bits (79), Expect = 0.21
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKID 556
IVG +G+GKS +AL RL+E + G ++ D
Sbjct: 47 IVGESGSGKSVTALALMRLLEQAGGLVQCD 76
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 48.9 bits (116), Expect = 3e-06
Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 12/130 (9%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSS-----GQIKIDDFDIASVELE--TLRSRLSVIPQD 578
I+G +G GKS+LL AL R+ ++ S G + +D+ +I S L+ LR R+ ++ Q
Sbjct: 34 AIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQ 93
Query: 579 PVLFNGTIRYNL--DP--FGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGE 634
P F +I N+ P G + L + +EKS L+ + K + G LS G+
Sbjct: 94 PNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKS-LRQAALWDEVKDNLHKSGLALSGGQ 152
Query: 635 KQLLCLARAL 644
+Q LC+AR L
Sbjct: 153 QQRLCIARVL 162
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 48.0 bits (115), Expect = 3e-06
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ +NV+ R+ + L +++ I GE + ++G +G GK++ L + L E +SG+I
Sbjct: 1 VELENVTKRFGNV--TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIY 58
Query: 497 IDDFDIASVE 506
I D+ +
Sbjct: 59 IGGRDVTDLP 68
Score = 36.1 bits (84), Expect = 0.034
Identities = 31/125 (24%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGT 585
++G +G GK++ L + L E +SG+I I D+ + + ++++ Q+ L+ + T
Sbjct: 31 LLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAMVFQNYALYPHMT 88
Query: 586 IRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARAL 644
+ N+ FG + + E+ ++++ + LD QLS G++Q + L RA+
Sbjct: 89 VYDNI-AFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP--KQLSGGQRQRVALGRAI 145
Query: 645 LRKTK 649
+R+ K
Sbjct: 146 VREPK 150
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 47.8 bits (114), Expect = 5e-06
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 23/118 (19%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKI----DDFDIASV--- 505
VL NVS +N GE + + G +GAGKS+LL +L+ SG+I + D+A
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 506 ELETLRSR--------LSVIPQ--------DPVLFNGIVGRTGAGKSSLLVALFRLVE 547
E+ +R + L VIP+ +P+L G+ ++ L+A + E
Sbjct: 83 EVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPE 140
Score = 32.7 bits (75), Expect = 0.44
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKI 555
+ G +GAGKS+LL +L+ SG+I +
Sbjct: 38 ALSGPSGAGKSTLLKSLYANYLPDSGRILV 67
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 48.1 bits (114), Expect = 5e-06
Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 17/136 (12%)
Query: 526 GIVGRTGAGKSSLLVALFRL---VELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF 582
++G +G GKS+ L R+ + G ++I+ D+ + ++ LR + ++ Q P +F
Sbjct: 32 ALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVF 91
Query: 583 NGTIRYNLDPFGRCH---------DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLG 633
+I N+ + H + + D L+K L +V + KL + LS G
Sbjct: 92 VKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEV---KDKLKQNALA--LSGG 146
Query: 634 EKQLLCLARALLRKTK 649
++Q LC+ARAL K K
Sbjct: 147 QQQRLCIARALAIKPK 162
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 47.0 bits (113), Expect = 5e-06
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 450 WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI-ASVELE 508
+ +VSF + GE +GI G G G++ L ALF L +SG+I +D + +
Sbjct: 12 VKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRD 71
Query: 509 TLRSRLSVIPQD 520
+R+ ++ +P+D
Sbjct: 72 AIRAGIAYVPED 83
Score = 33.6 bits (78), Expect = 0.19
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI-ASVELETLRSRLSVIPQD 578
GI G G G++ L ALF L +SG+I +D + + +R+ ++ +P+D
Sbjct: 30 GIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPED 83
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 48.1 bits (114), Expect = 5e-06
Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 18/138 (13%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKID-DFDI-------ASVELETLRSRLSVIPQ 577
I+G +G GKS+ + L R+ EL G +K++ D + + LR ++ ++ Q
Sbjct: 37 AIIGPSGCGKSTFIKTLNRISELE-GPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQ 95
Query: 578 DPVLFNGTI----RYNLDPFGRCHDTELWDALEKSHLKSKVV--TMRSKLDSDVQGDQLS 631
P F +I Y + + +L D + +S LK + ++ KL+ G LS
Sbjct: 96 RPNPFPMSIYENVAYGVRISAKLPQADL-DEIVESALKGAALWQEVKDKLNKSALG--LS 152
Query: 632 LGEKQLLCLARALLRKTK 649
G++Q LC+ARAL K K
Sbjct: 153 GGQQQRLCIARALAIKPK 170
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 47.2 bits (113), Expect = 6e-06
Identities = 17/51 (33%), Positives = 32/51 (62%)
Query: 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 502
++ + +SF + GE + + G G+GK++LL + L+ ++G IK+D DI
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDI 66
Score = 34.5 bits (80), Expect = 0.11
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 560
+ G G+GK++LL + L+ ++G IK+D DI
Sbjct: 33 LTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDI 66
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 48.1 bits (114), Expect = 6e-06
Identities = 44/167 (26%), Positives = 87/167 (52%), Gaps = 23/167 (13%)
Query: 494 QIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELS---- 549
++K++ ++ + ++ P++ V I+G +G GKS++L ++ R+ +L
Sbjct: 4 KVKLEQLNVHFGKNHAVKDVSMDFPENSV--TAIIGPSGCGKSTVLRSINRMHDLVPSAR 61
Query: 550 -SGQIKIDDFDI--ASVELETLRSRLSVIPQDPVLF-------NGTIRYNLDPFGRCHDT 599
+G+I +DD DI V+ ++R R+ ++ Q P F N Y L+ GR + +
Sbjct: 62 VTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN--GRVNRS 119
Query: 600 ELWDALEKSHLKSKVV--TMRSKLDSDVQGDQLSLGEKQLLCLARAL 644
E D + +S LK + ++ +L S+ +LS G++Q LC+AR +
Sbjct: 120 EA-DEIVESSLKRVALWDEVKDRLKSNAM--ELSGGQQQRLCIARTI 163
Score = 38.1 bits (88), Expect = 0.010
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 18/87 (20%)
Query: 456 NVSFRINHG---------EN--IGIVGRTGAGKSSLLVALFRLVELS-----SGQIKIDD 499
NV F NH EN I+G +G GKS++L ++ R+ +L +G+I +DD
Sbjct: 11 NVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDD 70
Query: 500 FDI--ASVELETLRSRLSVIPQDPVLF 524
DI V+ ++R R+ ++ Q P F
Sbjct: 71 TDIYDRGVDPVSIRRRVGMVFQKPNPF 97
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 47.3 bits (113), Expect = 6e-06
Identities = 43/138 (31%), Positives = 62/138 (44%), Gaps = 27/138 (19%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD---FDIA-SVELETLRSRLSVIPQDP 579
GI G +GAGKS+LL + L + G I ++ FD + L + ++ ++ Q
Sbjct: 25 VTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQY 84
Query: 580 VLF-NGTIRYNLDPFG--RCHD-------TELWDALEKSHLKSKVVTMRSKLDSDVQGDQ 629
LF + +R NL FG R + EL D L HL ++ Q
Sbjct: 85 ALFPHLNVRENLA-FGLKRKRNREDRISVDELLDLLGLDHLLNRYP------------AQ 131
Query: 630 LSLGEKQLLCLARALLRK 647
LS GEKQ + LARAL +
Sbjct: 132 LSGGEKQRVALARALAAQ 149
Score = 36.1 bits (84), Expect = 0.029
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 456 NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD---FDIA-SVELETLR 511
+ F +N E GI G +GAGKS+LL + L + G I ++ FD + L +
Sbjct: 16 KIDFDLN-EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ 74
Query: 512 SRLSVIPQDPVLF 524
++ ++ Q LF
Sbjct: 75 RKIGLVFQQYALF 87
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 48.2 bits (115), Expect = 7e-06
Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ +++ Y D L ++F+ GE + ++G GAGKS+L + +++ +SG++
Sbjct: 2 LETRDLKYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVL 60
Query: 497 ID----DFDIASVELETLRSRLSVIPQDP 521
I +D S L +R + ++ Q+P
Sbjct: 61 IKGEPIKYDKKS--LLEVRKTVGIVFQNP 87
Score = 29.7 bits (67), Expect = 4.5
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKID----DFDIASVELETLRSRLSVIPQDP 579
++G GAGKS+L + +++ +SG++ I +D S L +R + ++ Q+P
Sbjct: 33 LLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKS--LLEVRKTVGIVFQNP 87
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 48.7 bits (116), Expect = 8e-06
Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 26/154 (16%)
Query: 442 VSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFR--------LVELSSG 493
+ VL N++ I G+ + +VG++GAGK++LL + SG
Sbjct: 388 GVRQRVIERY-VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSG 446
Query: 494 QIKIDDFDIASV---ELE------TLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFR 544
++++ ++++ E E T+ L D I+ R G + L F
Sbjct: 447 KVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFS 506
Query: 545 LVELSSGQIKIDDFDIASVELETLRSRLSVIPQD 578
ELS+GQ + +A + L R +V+ D
Sbjct: 507 --ELSTGQKE--RAKLAKL----LAERPNVLLID 532
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 47.5 bits (113), Expect = 8e-06
Identities = 23/65 (35%), Positives = 38/65 (58%)
Query: 457 VSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516
VSF + G+ + I+G G+GKS+L L ++E +SG+I I+D + + R+ +
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRM 91
Query: 517 IPQDP 521
I QDP
Sbjct: 92 IFQDP 96
Score = 42.9 bits (101), Expect = 3e-04
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 11/127 (8%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP-VLFN- 583
I+G G+GKS+L L ++E +SG+I I+D + + R+ +I QDP N
Sbjct: 43 AIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNP 102
Query: 584 ----GTIRYNLD-PFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLL 638
G I LD P D E ++ ++V + ++ L+ G+KQ +
Sbjct: 103 RLRIGQI---LDFPLRLNTDLEPEQRRKQIFETLRMVGLLPD-HANYYPHMLAPGQKQRV 158
Query: 639 CLARALL 645
LARAL+
Sbjct: 159 ALARALI 165
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 48.1 bits (114), Expect = 9e-06
Identities = 58/201 (28%), Positives = 91/201 (45%), Gaps = 25/201 (12%)
Query: 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELE 508
L + + S I GE I+G +G+GKS+++ L RL+E + GQ+ ID DIA + EL
Sbjct: 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELR 101
Query: 509 TLRSR--------LSVIPQDPVLFNGIVGRTGAG------KSSLLVALFRLVELSSGQIK 554
+R + +++P VL N G AG + L AL R V L +
Sbjct: 102 EVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDAL-RQVGLENYAHS 160
Query: 555 IDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSK- 613
D + +R I D +L + LDP R TE+ D L K K +
Sbjct: 161 YPDELSGGMRQRVGLARALAINPDILLMDEAFS-ALDPLIR---TEMQDELVKLQAKHQR 216
Query: 614 -VVTMRSKLDSDVQ-GDQLSL 632
+V + LD ++ GD++++
Sbjct: 217 TIVFISHDLDEAMRIGDRIAI 237
Score = 45.4 bits (107), Expect = 7e-05
Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 11/125 (8%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---EL-ETLRSRLSVIPQDPVLF 582
I+G +G+GKS+++ L RL+E + GQ+ ID DIA + EL E R +++++ Q L
Sbjct: 59 IMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALM 118
Query: 583 NGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRS-KLDSDVQG--DQLSLGEKQLLC 639
+ FG EL + + + +R L++ D+LS G +Q +
Sbjct: 119 PHMTVLDNTAFG----MELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVG 174
Query: 640 LARAL 644
LARAL
Sbjct: 175 LARAL 179
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 46.9 bits (112), Expect = 1e-05
Identities = 19/69 (27%), Positives = 34/69 (49%)
Query: 444 LRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA 503
L + +++SF +N GE + I G GAGK++LL L L+ +G++ I
Sbjct: 8 LSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQ 67
Query: 504 SVELETLRS 512
+V ++
Sbjct: 68 NVRESYHQA 76
Score = 42.7 bits (101), Expect = 2e-04
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 13/123 (10%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
I G GAGK++LL L L+ +G++ I +V ++ L + Q + T
Sbjct: 33 ITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTA 92
Query: 587 RYNL---DPFGRCHDTE-LWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLAR 642
NL F + +W+AL + V + D V QLS G+++ + LAR
Sbjct: 93 LENLHFWQRFHGSGNAATIWEALAQ-------VGLAGLEDLPVG--QLSAGQQRRVALAR 143
Query: 643 ALL 645
L
Sbjct: 144 LWL 146
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 46.9 bits (112), Expect = 1e-05
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+K +N+S +++ L NVS + G+ I+G TG+GKS LL + ++ SG+I
Sbjct: 1 LKVENLSKDWKE---FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKIL 57
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLF 524
++ DI ++ E + +S +PQ+ LF
Sbjct: 58 LNGKDITNLPPE--KRDISYVPQNYALF 83
Score = 46.6 bits (111), Expect = 1e-05
Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 23/167 (13%)
Query: 488 VELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVE 547
+++ + +F + +V LE R VI +G TG+GKS LL + ++
Sbjct: 1 LKVENLSKDWKEFKLKNVSLEVERGDYFVI----------LGPTGSGKSVLLETIAGFIK 50
Query: 548 LSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGTIRYNLDPFGRCHDTELWDALE 606
SG+I ++ DI ++ E + +S +PQ+ LF + T+ N+ +G +
Sbjct: 51 PDSGKILLNGKDITNLPPE--KRDISYVPQNYALFPHMTVYKNIA-YGLKKRKV-----D 102
Query: 607 KSHLKSKVVTMRSKLDSDVQGDQ----LSLGEKQLLCLARALLRKTK 649
K ++ KV+ + L D ++ LS GE+Q + +ARAL+ K
Sbjct: 103 KKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPK 149
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 47.4 bits (112), Expect = 1e-05
Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 10/127 (7%)
Query: 528 VGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIASVELETL--RSRLSVIPQDPV 580
+G +G GKS+ L L +L +L G+I + S ++ +L R+R+ ++ Q P
Sbjct: 114 IGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPT 173
Query: 581 LFNGTIRYNLDPFGR---CHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQL 637
F +I N+ R +D ++ + + + LKS + K D D G+ LS G++Q
Sbjct: 174 PFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQR 233
Query: 638 LCLARAL 644
LC+ARA+
Sbjct: 234 LCIARAI 240
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 47.0 bits (112), Expect = 1e-05
Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+ +++ RY+D L +S I G ++G GAGKS+LL+ L + G++K
Sbjct: 5 IEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63
Query: 497 IDDFDIASVELETLRSRLSVIPQDP 521
+ ++ + + +RS++ ++ QDP
Sbjct: 64 VMGREVNAENEKWVRSKVGLVFQDP 88
Score = 34.7 bits (80), Expect = 0.11
Identities = 18/62 (29%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNG 584
++G GAGKS+LL+ L + G++K+ ++ + + +RS++ ++ QDP +F+
Sbjct: 36 LLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSS 95
Query: 585 TI 586
T+
Sbjct: 96 TV 97
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 46.9 bits (112), Expect = 1e-05
Identities = 20/45 (44%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLL 481
I+ KNVS+R +L ++S+++N GE+ IVG GAGK++LL
Sbjct: 32 IELKNVSVRRNGKK--ILGDLSWQVNPGEHWAIVGPNGAGKTTLL 74
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 46.9 bits (111), Expect = 1e-05
Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 12/137 (8%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVE-----LSSGQIKIDDFDI--ASVELETLRSRLSVIP 576
++G +G GKS+ L L R+ + +G+IK + +I + ++L LR + ++
Sbjct: 32 LTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVF 91
Query: 577 QDPVLFN----GTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSL 632
Q P F + Y L G D EL D + LK + +K + D S
Sbjct: 92 QQPTPFPFSVYDNVAYGLKIAG-VKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSG 150
Query: 633 GEKQLLCLARALLRKTK 649
G++Q +C+ARAL + K
Sbjct: 151 GQQQRICIARALAVRPK 167
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 47.6 bits (113), Expect = 1e-05
Identities = 48/184 (26%), Positives = 81/184 (44%), Gaps = 11/184 (5%)
Query: 435 GTIKFKNVSLRYRD---NWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS 491
+I+ K+V + + + L + RI G+ + IVG G GKS+L L
Sbjct: 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ 395
Query: 492 SGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELS-S 550
G+I +D +++ + R S I D LF+ ++G +SL A L L +
Sbjct: 396 EGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIA 455
Query: 551 GQIKIDDFDIA-SVELET-LRSRLSVI----PQDPVLFNGTIRYNLDP-FGRCHDTELWD 603
++KI+D + + L T + RL++I P+L + DP F R EL
Sbjct: 456 DKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLP 515
Query: 604 ALEK 607
L++
Sbjct: 516 DLKR 519
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 45.9 bits (109), Expect = 2e-05
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 451 PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKID--DFDIASVELE 508
P VL ++F GE + ++G GAGKS+LL+ L L+ SG + ID D + L
Sbjct: 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLL 64
Query: 509 TLRSRLSVIPQDP 521
R R+ ++ QDP
Sbjct: 65 ERRQRVGLVFQDP 77
Score = 36.6 bits (85), Expect = 0.020
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKID--DFDIASVELETLRSRLSV 574
+ VL ++G GAGKS+LL+ L L+ SG + ID D + L R R+ +
Sbjct: 15 AERGEVL--ALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGL 72
Query: 575 IPQDP 579
+ QDP
Sbjct: 73 VFQDP 77
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 46.8 bits (111), Expect = 2e-05
Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
VL N++ +I GE + I G TG+GK+SLL+ + +E S G+IK
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIK 95
Score = 42.2 bits (99), Expect = 5e-04
Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 17/123 (13%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
I G TG+GK+SLL+ + +E S G+IK R+S Q + GTI
Sbjct: 68 ITGSTGSGKTSLLMLILGELEPSEGKIKHS-------------GRISFSSQFSWIMPGTI 114
Query: 587 RYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGD---QLSLGEKQLLCLARA 643
+ N+ FG +D + ++ K+ + +T + D+ V G+ LS G++ + LARA
Sbjct: 115 KENI-IFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARA 173
Query: 644 LLR 646
+ +
Sbjct: 174 VYK 176
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 46.8 bits (111), Expect = 2e-05
Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 18/128 (14%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQ-DPVLFNG 584
G++G GAGKS++ L ++ G+I + + S R + V+PQ D +
Sbjct: 34 GLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPS-RARLARVAIGVVPQFDNLDPEF 92
Query: 585 TIRYNLDPFGR---CHDTELWDA----LEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQL 637
T+R NL FGR E+ LE + L+SK +DV+ LS G K+
Sbjct: 93 TVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK---------ADVRVALLSGGMKRR 143
Query: 638 LCLARALL 645
L LARAL+
Sbjct: 144 LTLARALI 151
Score = 42.2 bits (99), Expect = 5e-04
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I VS Y D +V+ ++SF I GE G++G GAGKS++ L ++ G+I
Sbjct: 5 IDLVGVSKSYGDK--VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKIT 62
Query: 497 IDDFDIASVELETLRSRLSVIPQ 519
+ + S R + V+PQ
Sbjct: 63 VLGEPVPS-RARLARVAIGVVPQ 84
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 47.3 bits (113), Expect = 2e-05
Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 13/85 (15%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I L + D PL L N I E + +VGR GAGKS+L+ L V L G+I
Sbjct: 4 ISIHGAWLSFSDA-PL-LDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRII 61
Query: 497 IDDFDIASVELETLRSRLSVIPQDP 521
E + + +RL QDP
Sbjct: 62 Y--------EQDLIVARL---QQDP 75
Score = 38.0 bits (89), Expect = 0.015
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 422 GQVKVKLADWPRQGTIKF--KNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSS 479
G K+++ + R G I F +NV+ + ++ + S ++ G+ I ++G G GK++
Sbjct: 303 GTAKMQVEEASRSGKIVFEMENVNYQIDGK--QLVKDFSAQVQRGDKIALIGPNGCGKTT 360
Query: 480 LLVALFRLVELSSGQIK 496
LL + ++ SG+I
Sbjct: 361 LLKLMLGQLQADSGRIH 377
Score = 37.2 bits (87), Expect = 0.030
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 11/53 (20%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP 579
+VGR GAGKS+L+ L V L G+I E + + +RL QDP
Sbjct: 34 LVGRNGAGKSTLMKILNGEVLLDDGRIIY--------EQDLIVARL---QQDP 75
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 46.6 bits (111), Expect = 2e-05
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
++ + V+ + D + N+SF + GE G++G GAGK++ + L+E + G+I
Sbjct: 2 ALEIEGVTKSFGDK--KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEI 59
Query: 496 KIDDFDIA 503
+ ++
Sbjct: 60 TWNGGPLS 67
Score = 35.4 bits (82), Expect = 0.077
Identities = 36/187 (19%), Positives = 73/187 (39%), Gaps = 46/187 (24%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NG 584
G++G GAGK++ + L+E + G+I + ++ + +++R+ +P++ L+
Sbjct: 32 GLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLS----QEIKNRIGYLPEERGLYPKM 87
Query: 585 TIRYNLDPFGRCHDTELWDA-------LEKSHLKSKVVTMRSKLDSDVQGDQ-----LS- 631
T+ L + LE+ + K K+ +G+Q +S
Sbjct: 88 TVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGK---KTKKIKELSKGNQQKIQFISA 144
Query: 632 -LGEKQLLCL-----------ARALLRKTKKKKKSGVNITRPVTS----------CDKVL 669
+ E +LL L L + K+ G I + S CD++L
Sbjct: 145 VIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATI---IFSSHRMEHVEELCDRLL 201
Query: 670 VMDNGQA 676
++ GQ
Sbjct: 202 MLKKGQT 208
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 46.9 bits (112), Expect = 2e-05
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ + +S + V++N+ IN+GE + ++G +G GK+++L + SG+I
Sbjct: 15 VELRGISKSFDGK--EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIM 72
Query: 497 IDDFDIASVELE 508
+D DI V E
Sbjct: 73 LDGQDITHVPAE 84
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 46.7 bits (111), Expect = 2e-05
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I F+NV RY D LV+ +SF + GE G++G GAGK++ L L L +G I
Sbjct: 8 IDFRNVEKRYGDK--LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSIS 65
Query: 497 IDDFDIASVELETLRSRLSVIPQ----DP 521
+ + S R R+ V+PQ DP
Sbjct: 66 LCGEPVPS-RARHARQRVGVVPQFDNLDP 93
Score = 43.3 bits (102), Expect = 3e-04
Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 18/128 (14%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQ----DPVL 581
G++G GAGK++ L L L +G I + + S R R+ V+PQ DP
Sbjct: 37 GLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPS-RARHARQRVGVVPQFDNLDP-- 93
Query: 582 FNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMR--SKLDS--DVQGDQLSLGEKQL 637
+ T+R NL FGR + L + ++ V + +KL++ D + +LS G K+
Sbjct: 94 -DFTVRENLLVFGR------YFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRR 146
Query: 638 LCLARALL 645
L LARAL+
Sbjct: 147 LTLARALV 154
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 45.7 bits (109), Expect = 2e-05
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+ +NVS Y + L VS I GE ++G +G GK++LL + +SG+I
Sbjct: 1 IELENVSKFYGGF--VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEIL 58
Query: 497 IDDFDIASV 505
+D DI ++
Sbjct: 59 LDGKDITNL 67
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 45.6 bits (109), Expect = 2e-05
Identities = 36/141 (25%), Positives = 57/141 (40%), Gaps = 24/141 (17%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVAL--FRLVELSSGQIKIDDFDIASVELETL 510
+L V+ I GE ++G G+GKS+L + E++ G+I DI + E
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPE-E 73
Query: 511 RSRLSVI--PQDPVLFNGI----------VGRTGAGK--SSLLVALF---RLV---ELSS 550
R+RL + Q P G+ G +G K + +L L L E S
Sbjct: 74 RARLGIFLAFQYPPEIPGVKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDS 133
Query: 551 GQIKIDDFDIASVELETLRSR 571
G + ID + + + LR
Sbjct: 134 G-LDIDALRLVAEVINKLREE 153
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 47.1 bits (112), Expect = 2e-05
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 4/61 (6%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRL--VELSSGQ 494
I+ KN++ ++ VL N+SF I GE +GI+GR+GAGKS L+ L + E +SG+
Sbjct: 1 IEVKNLTKKFDGK--EVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGR 58
Query: 495 I 495
I
Sbjct: 59 I 59
Score = 42.1 bits (99), Expect = 8e-04
Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 437 IKFKNVSLRYRD-NWPLVLA--NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493
IK +NVS RY + +V A NVS + GE GIVG +GAGK++L + ++E +SG
Sbjct: 280 IKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSG 339
Query: 494 QI 495
++
Sbjct: 340 EV 341
Score = 31.3 bits (71), Expect = 2.1
Identities = 57/249 (22%), Positives = 104/249 (41%), Gaps = 56/249 (22%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFR---INHGENIGIVGRTGAGKSSLLVALF-------- 485
+K +S+ +WP V+ ++S + + +GE G +VA+F
Sbjct: 215 VKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEE------GTPDEVVAVFMEGVSEVE 268
Query: 486 --RLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN-------GIVGRTGAGKS 536
VE+ IK+ + + ++ R V D V GIVG +GAGK+
Sbjct: 269 KECEVEVGEPIIKVRNVSKRYISVD----RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKT 324
Query: 537 SLLVALFRLVELSSGQIKI---DDF-DI----------ASVELETLRSRLSVIPQDPVLF 582
+L + ++E +SG++ + D++ D+ A + L + P VL
Sbjct: 325 TLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLD 384
Query: 583 NGTIRYNLD-PFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV---QGDQLSLGEKQLL 638
N T L+ P EL A K+ + K+V + ++ D+LS GE+ +
Sbjct: 385 NLTEAIGLELPD------EL--ARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRV 436
Query: 639 CLARALLRK 647
LA+ L+++
Sbjct: 437 ALAQVLIKE 445
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 46.3 bits (110), Expect = 3e-05
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 437 IKFKNVSLRYRDNWPL---VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493
I +NVS Y+ P L +V+ I G +G TG+GKS+++ L L + G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 494 QIKIDDFDIASV----ELETLRSRLSVIPQDP 521
+++DD I S +++ +R ++ ++ Q P
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFP 94
Score = 33.2 bits (76), Expect = 0.38
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV----ELETLRSRLSVIPQDP 579
+ +G TG+GKS+++ L L + G +++DD I S +++ +R ++ ++ Q P
Sbjct: 35 YTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFP 94
Query: 580 --VLFNGTI 586
LF T+
Sbjct: 95 ESQLFEETV 103
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 45.6 bits (108), Expect = 4e-05
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 440 KNVS--LRYRDNW-----PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS 492
+N+S RYR W + +SF + G+ + I+G G+GKS+L L ++E +S
Sbjct: 8 RNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTS 67
Query: 493 GQIKIDDFDIASVELETLRSRLSVIPQDP 521
G++ IDD + + R+ +I QDP
Sbjct: 68 GELLIDDHPLHFGDYSYRSQRIRMIFQDP 96
Score = 37.8 bits (88), Expect = 0.012
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 19/134 (14%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV------ 580
I+G G+GKS+L L ++E +SG++ IDD + + R+ +I QDP
Sbjct: 44 IIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPR 103
Query: 581 -----LFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEK 635
+ + +R N D + ++ + L + L + + L+ G+K
Sbjct: 104 QRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHM--------LAPGQK 155
Query: 636 QLLCLARALLRKTK 649
Q L LARAL+ + K
Sbjct: 156 QRLGLARALILRPK 169
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 45.8 bits (109), Expect = 4e-05
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 437 IKFKNVSLRYRDNWPL---VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493
IK KN+ + P L NVS IN GE I I+G+TG+GK++ + L L+ +G
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 494 QI 495
I
Sbjct: 63 TI 64
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 45.2 bits (107), Expect = 4e-05
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 441 NVSLRYRDNWPL--VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
N+ RY++ VL NVSF I GE + IVG +G+GKS+LL L L +SG +
Sbjct: 10 NLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDV 66
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 46.0 bits (109), Expect = 5e-05
Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 16/132 (12%)
Query: 456 NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS-SGQIKID--DFDIASVELETLRS 512
+VSF + GE +G+ G GAG++ L+ ALF G + I+ DI + + +R+
Sbjct: 278 DVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNP-AQAIRA 336
Query: 513 RLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS-- 570
++++P+D +GIV G GK+ L L +++ID A+ EL+ + S
Sbjct: 337 GIAMVPEDRKR-HGIVPILGVGKNITLSVLKSF----CFKMRID----AAAELQIIGSAI 387
Query: 571 -RLSVIPQDPVL 581
RL V P L
Sbjct: 388 QRLKVKTASPFL 399
Score = 33.3 bits (76), Expect = 0.44
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 454 LANVSFRINHGENIGIVGRTGAGKSSLLVAL 484
L + + GE +G+ G GAGKS+L+ L
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKIL 47
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 44.8 bits (106), Expect = 6e-05
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Query: 437 IKFKNVSLRYRDN-------WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE 489
++ ++V+ YR VL NVS I GE +G++GR+G GKS+L L L +
Sbjct: 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK 62
Query: 490 LSSGQIKIDDFDIASVELET---LRSRLSVIPQD 520
+ G + D+ ++ + R + ++ QD
Sbjct: 63 PAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQD 96
Score = 39.0 bits (91), Expect = 0.004
Identities = 49/189 (25%), Positives = 79/189 (41%), Gaps = 40/189 (21%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET---LRSRLSVIPQD-PVL 581
G++GR+G GKS+L L L + + G + D+ ++ + R + ++ QD P
Sbjct: 41 GLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSA 100
Query: 582 FNG--TIRYNL-DPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLL 638
N T+R + +P + + + +V +RS+ D+D QLS G+ Q +
Sbjct: 101 VNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSE-DADKLPRQLSGGQLQRI 159
Query: 639 CLARALLRK-------------------------TKKKKKSGVN---IT---RPVTS-CD 666
+ARAL K K ++ G IT R V S C
Sbjct: 160 NIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQ 219
Query: 667 KVLVMDNGQ 675
+V VMD GQ
Sbjct: 220 RVAVMDKGQ 228
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 45.8 bits (109), Expect = 6e-05
Identities = 51/161 (31%), Positives = 70/161 (43%), Gaps = 24/161 (14%)
Query: 495 IKIDDFDIASVELETLRSRLSVI--PQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQ 552
I +++ + + + +TL S L+ P + +L I G +GAGK+SLL AL L SG+
Sbjct: 393 ITLENLSLRTPDGQTLLSELNFEVRPGERLL---ITGESGAGKTSLLRALAGLWPWGSGR 449
Query: 553 IKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIR----YNLDPFGRCHDTELWDALEKS 608
I + S L +PQ P L GT+R Y D EL L K
Sbjct: 450 ISMPA-----------DSALLFLPQRPYLPQGTLREALCYPNAA-PDFSDAELVAVLHKV 497
Query: 609 HLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTK 649
L + + D LS GE+Q L AR LL K K
Sbjct: 498 GLGDLAERLDEEDRWD---RVLSGGEQQRLAFARLLLHKPK 535
Score = 44.6 bits (106), Expect = 1e-04
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVAL 484
I +N+SLR D L L+ ++F + GE + I G +GAGK+SLL AL
Sbjct: 390 DHGITLENLSLRTPDGQTL-LSELNFEVRPGERLLITGESGAGKTSLLRAL 439
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 44.8 bits (106), Expect = 6e-05
Identities = 46/152 (30%), Positives = 76/152 (50%), Gaps = 28/152 (18%)
Query: 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELS-----SGQIKIDDFDIASVELETL--R 569
IPQ+ V ++G +G GKS+LL RL+EL+ G++++ +I S +++ + R
Sbjct: 27 IPQNGVF--ALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVR 84
Query: 570 SRLSVIPQDPVLF-------NGTIRYNLDPFGRCHDTEL-----WDALEKSHLKSKVVTM 617
+ ++ Q P F N I L+ + EL W AL+K+ L +V
Sbjct: 85 REVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKK-ELDERVEW-ALKKAALWDEV--- 139
Query: 618 RSKLDSDVQGDQLSLGEKQLLCLARALLRKTK 649
+ +L+ D LS G++Q L +ARAL K K
Sbjct: 140 KDRLN-DYPS-NLSGGQRQRLVIARALAMKPK 169
Score = 36.7 bits (85), Expect = 0.025
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS----- 491
I+ N+ + Y N V+ V +I ++G +G GKS+LL RL+EL+
Sbjct: 5 IETVNLRVYYGSN--HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARV 62
Query: 492 SGQIKIDDFDIASVELETLRSRLSV 516
G++++ +I S +++ + R V
Sbjct: 63 EGEVRLFGRNIYSPDVDPIEVRREV 87
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 44.7 bits (106), Expect = 7e-05
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 24/133 (18%)
Query: 439 FKNVSLRYRDNWPL-VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKI 497
K +L + L VL NVS +N GE + + G +G+GKS+LL +L+ GQI +
Sbjct: 11 SKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILV 70
Query: 498 ----DDFDIASVE----LETLRSR-------LSVIPQ--------DPVLFNGIVGRTGAG 534
+ D+ + E LE R+ L VIP+ +P+L G+
Sbjct: 71 RHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARA 130
Query: 535 KSSLLVALFRLVE 547
K++ L+ L E
Sbjct: 131 KAADLLTRLNLPE 143
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 44.8 bits (106), Expect = 7e-05
Identities = 44/163 (26%), Positives = 79/163 (48%), Gaps = 20/163 (12%)
Query: 495 IKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVEL-----S 549
I+ D ++ + + L IP++ V ++G +G GKS+ L + R+ +L
Sbjct: 40 IEARDLNVFYGDEQALDDVSMDIPENQV--TAMIGPSGCGKSTFLRCINRMNDLIDAARV 97
Query: 550 SGQIKIDDFDI--ASVELETLRSRLSVIPQDPVLFNGTIR----YNLDPFGR--CHDTEL 601
G++ ++ A V+ LR R+ ++ Q P F +I Y L G D +
Sbjct: 98 EGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERV 157
Query: 602 WDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARAL 644
++L ++ L +V + +LDS G LS G++Q LC+ARA+
Sbjct: 158 EESLRRAALWDEV---KDQLDS--SGLDLSGGQQQRLCIARAI 195
>gnl|CDD|225105 COG2194, COG2194, Predicted membrane-associated, metal-dependent
hydrolase [General function prediction only].
Length = 555
Score = 45.5 bits (108), Expect = 7e-05
Identities = 36/173 (20%), Positives = 69/173 (39%), Gaps = 19/173 (10%)
Query: 90 EVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAF 149
++ + S+L A+ + + F L + +I +L S F + F
Sbjct: 9 KLTKLSLSLLLAWYFLLLLNFAFFLQVFLINSLDLSFSFSFLLALV---------FAFLL 59
Query: 150 LMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLF--------AFLMICF 201
L++ FP PL + +L + F Y + +NM +F L + +
Sbjct: 60 LLLLLSFPRLLKPLAGVLSLVSAAASYFAYFYGIIIDKNMLLNVFETNTAESSELLTL-Y 118
Query: 202 VFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMIC-FVFPWF 253
W L L+ L L+ + V+LR ++ + S+L + L+I F P++
Sbjct: 119 FLLWLVLVGLLPALLIVLVIIRYYRVWLRRLWARLVSILLSLLVILAFAAPFY 171
Score = 38.9 bits (91), Expect = 0.008
Identities = 42/222 (18%), Positives = 74/222 (33%), Gaps = 31/222 (13%)
Query: 1 MLFAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVIQNMWSMLFAFLMICFVFP 60
+L A+ + + F L + +I +L S F + F L++ FP
Sbjct: 17 LLLAWYFLLLLNFAFFLQVFLINSLDLSFSFSFLLALV---------FAFLLLLLLLSFP 67
Query: 61 WFALPLLIITTLYHLISKVFRSVYLRSTDEVFQNMWSMLF--------AFLMICFVFPWF 112
PL + +L +S + +NM +F L + + W
Sbjct: 68 RLLKPLAGVLSL---VSAAASYFAYFYGIIIDKNMLLNVFETNTAESSELLTL-YFLLWL 123
Query: 113 ALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMIC-FVFPWFALPLLIITTLYH 171
L L+ L L+ + V+LR ++ + S+L + L+I F P++
Sbjct: 124 VLVGLLPALLIVLVIIRYYRVWLRRLWARLVSILLSLLVILAFAAPFY-------KNYAS 176
Query: 172 LISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLII 213
+ S+ R N F PLL I
Sbjct: 177 IFRNNGDSLAKRYRPANYL--YALFGYYQGQVIKSLFPLLQI 216
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 44.6 bits (105), Expect = 7e-05
Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 10/131 (7%)
Query: 527 IVGRTGAGKSSLLVALFRLVELS-----SGQIKIDDFDI--ASVELETLRSRLSVIPQDP 579
++G +G GKS+ L L R+ +L G++ +D +I V++ LR R+ ++ Q P
Sbjct: 35 LIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKP 94
Query: 580 VLFNGTIRYNLDPFGRCH---DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQ 636
F +I N+ R H D + D + + LK + K D +LS G++Q
Sbjct: 95 NPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQ 154
Query: 637 LLCLARALLRK 647
LC+AR + K
Sbjct: 155 RLCIARTIAVK 165
Score = 36.9 bits (85), Expect = 0.026
Identities = 25/95 (26%), Positives = 49/95 (51%), Gaps = 9/95 (9%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----S 491
++ KN++L Y + L +++ I + ++G +G GKS+ L L R+ +L
Sbjct: 5 MESKNLNLWYGEKQ--ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKI 62
Query: 492 SGQIKIDDFDI--ASVELETLRSRLSVIPQDPVLF 524
G++ +D +I V++ LR R+ ++ Q P F
Sbjct: 63 EGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPF 97
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 44.4 bits (106), Expect = 8e-05
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 502
+L VS + GE ++GR G GK++LL L L+ + SG I++D DI
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDI 64
Score = 43.7 bits (104), Expect = 1e-04
Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 50/161 (31%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE-LETLRSRLSVIPQD----PVL 581
++GR G GK++LL L L+ + SG I++D DI + E R+ ++ +PQ P L
Sbjct: 31 VLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRL 90
Query: 582 FNGTIRYNL----DPFGRCHDT------ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLS 631
T+ NL R EL+ L++ M + +G LS
Sbjct: 91 ---TVEENLLTGLAALPRRSRKIPDEIYELFPVLKE---------MLGR-----RGGDLS 133
Query: 632 LGEKQLLCLARALLRKTKKKKKSGVNITRPVTSCDKVLVMD 672
G++Q L +ARAL +TRP K+L++D
Sbjct: 134 GGQQQQLAIARAL-------------VTRP-----KLLLLD 156
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 45.2 bits (108), Expect = 9e-05
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 6/64 (9%)
Query: 437 IKFKNVSLRYRDNWPLVLAN--VSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
++ + ++ R+ P V+AN VS + GE ++G GAGKS+L+ LF L + SG+
Sbjct: 5 LEMRGITKRF----PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGE 60
Query: 495 IKID 498
I++D
Sbjct: 61 IRVD 64
Score = 40.6 bits (96), Expect = 0.002
Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 15/106 (14%)
Query: 438 KFKNVSLRYRDNWPLV-LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+ +++S++ D + + +VSF + GE +GI G G G+S L+ A+ L + +SG+I
Sbjct: 259 EVEDLSVK--DRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRIL 316
Query: 497 IDDFDIASVE--LETLRSRLSVIPQD----------PVLFNGIVGR 530
++ D+ E R L+ +P+D + N ++GR
Sbjct: 317 LNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGR 362
Score = 37.9 bits (89), Expect = 0.017
Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 11/128 (8%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA-SVELETLRSRLSVIPQDPVLFNG 584
++G GAGKS+L+ LF L + SG+I++D ++ + +R + ++ Q +L
Sbjct: 34 ALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPT 93
Query: 585 -TIRYNL-----DPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLL 638
T+ N+ G D A + S+ + D+ V LS+GE+Q +
Sbjct: 94 LTVAENIILGLEPSKGGLIDRR--QARARIKELSERYGLPVDPDAKVA--DLSVGEQQRV 149
Query: 639 CLARALLR 646
+ +AL R
Sbjct: 150 EILKALYR 157
Score = 33.7 bits (78), Expect = 0.31
Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 16/136 (11%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE--LETLRSRLSVIPQD----- 578
GI G G G+S L+ A+ L + +SG+I ++ D+ E R L+ +P+D
Sbjct: 288 GIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHG 347
Query: 579 -----PVLFNGTI-RYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDS-DVQGDQLS 631
+ N + R++ PF R A+ K + + + S D LS
Sbjct: 348 LVLDLSLAENLVLGRHDKKPFSR-GGFLDRRAIRK-FARELIEEFDVRAPSPDAPARSLS 405
Query: 632 LGEKQLLCLARALLRK 647
G +Q L LAR L R+
Sbjct: 406 GGNQQKLILARELARR 421
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 44.2 bits (104), Expect = 9e-05
Identities = 38/134 (28%), Positives = 68/134 (50%), Gaps = 17/134 (12%)
Query: 525 NGIVGRTGAGKSSLLVALFRLVELS-----SGQIKIDDFDI--ASVELETLRSRLSVIPQ 577
N ++G +G GK++ L A+ R+ +L+ +G+I +D DI V+ +R R+ ++ Q
Sbjct: 33 NALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQ 92
Query: 578 DPVLFNGTIRYN-----LDPFGRCHDTELWDALEKSHLKSKVV--TMRSKLDSDVQGDQL 630
P F ++ L G L + E+S L+ + ++ +L + G L
Sbjct: 93 KPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERS-LRGAALWDEVKDRLKTPATG--L 149
Query: 631 SLGEKQLLCLARAL 644
S G++Q LC+ARAL
Sbjct: 150 SGGQQQRLCIARAL 163
Score = 36.1 bits (83), Expect = 0.040
Identities = 25/92 (27%), Positives = 49/92 (53%), Gaps = 9/92 (9%)
Query: 440 KNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS-----SGQ 494
++V++ Y D + NV+ + G ++G +G GK++ L A+ R+ +L+ +G+
Sbjct: 8 QDVNIYYGDKQ--AVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGR 65
Query: 495 IKIDDFDI--ASVELETLRSRLSVIPQDPVLF 524
I +D DI V+ +R R+ ++ Q P F
Sbjct: 66 ILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPF 97
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 43.7 bits (103), Expect = 1e-04
Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 7/93 (7%)
Query: 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLL--VALFRLVELS- 491
G + KNVSLR + +LANV+F I GE + ++G +G GKS+LL + + S
Sbjct: 1 GMLCLKNVSLRLPGS--CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSC 58
Query: 492 SGQIKIDDFDIASVELETLRSRLSVIPQDPVLF 524
+G++ +++ + L + ++ ++ QD +LF
Sbjct: 59 TGELWLNEQRLDM--LPAAQRQIGILFQDALLF 89
Score = 36.3 bits (84), Expect = 0.032
Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 21/133 (15%)
Query: 527 IVGRTGAGKSSLL--VALFRLVELS-SGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 583
++G +G GKS+LL + + S +G++ +++ + L + ++ ++ QD +LF
Sbjct: 33 LMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM--LPAAQRQIGILFQDALLFP 90
Query: 584 -----GTIRYNLDPF--GRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQ 636
+ + L G ALE+S L D LS G++
Sbjct: 91 HLSVGQNLLFALPATLKGNARRNAANAALERSGLDGA-------FHQD--PATLSGGQRA 141
Query: 637 LLCLARALLRKTK 649
+ L RALL + K
Sbjct: 142 RVALLRALLAQPK 154
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 44.9 bits (107), Expect = 1e-04
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 13/82 (15%)
Query: 432 PRQG--TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV- 488
PR G I+ +N+S + D L++ ++SF++ G +G++G GAGKS+ LFR++
Sbjct: 316 PRLGDKVIEAENLSKGFGDK--LLIDDLSFKLPPGGIVGVIGPNGAGKST----LFRMIT 369
Query: 489 ---ELSSGQIKI-DDFDIASVE 506
+ SG IKI + +A V+
Sbjct: 370 GQEQPDSGTIKIGETVKLAYVD 391
Score = 33.7 bits (78), Expect = 0.31
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLL 481
+L ++S G IG++G GAGKS+LL
Sbjct: 20 ILKDISLSFFPGAKIGVLGLNGAGKSTLL 48
Score = 29.1 bits (66), Expect = 7.9
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 9/44 (20%)
Query: 526 GIVGRTGAGKSSLLVALFRLV----ELSSGQIKI-DDFDIASVE 564
G++G GAGKS+ LFR++ + SG IKI + +A V+
Sbjct: 352 GVIGPNGAGKST----LFRMITGQEQPDSGTIKIGETVKLAYVD 391
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 43.9 bits (104), Expect = 1e-04
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 9/95 (9%)
Query: 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL--- 490
Q ++ +N++L Y D L ++S RI +G +G GKS+LL R+ +L
Sbjct: 23 QTALEVRNLNLFYGDKQ--ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDN 80
Query: 491 --SSGQIKIDDFDI--ASVELETLRSRLSVIPQDP 521
G+I++D +I V++ LR R+ ++ Q P
Sbjct: 81 CRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRP 115
Score = 39.6 bits (93), Expect = 0.004
Identities = 42/141 (29%), Positives = 73/141 (51%), Gaps = 18/141 (12%)
Query: 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDI--ASVELETLR 569
IP++ V +G +G GKS+LL R+ +L G+I++D +I V++ LR
Sbjct: 48 IPKNRV--TAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELR 105
Query: 570 SRLSVIPQDPVLFNGTIR----YNLDPFGRCHDTELWDALEKSHLKSKVV--TMRSKLDS 623
R+ ++ Q P F +I Y L G + L +A+E+S L+ + ++ +L
Sbjct: 106 RRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERS-LRGAALWDEVKDRLHE 164
Query: 624 DVQGDQLSLGEKQLLCLARAL 644
+ G LS G++Q L +ARA+
Sbjct: 165 NAFG--LSGGQQQRLVIARAI 183
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 43.7 bits (103), Expect = 1e-04
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+ F VS Y L VS IN GE + ++G GAGK++LL L +SG+I
Sbjct: 6 LSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIV 63
Query: 497 IDDFDIASVEL-ETLRSRLSVIPQDPVLF 524
D DI + + +R ++++P+ +F
Sbjct: 64 FDGKDITDWQTAKIMREAVAIVPEGRRVF 92
Score = 32.9 bits (75), Expect = 0.38
Identities = 31/127 (24%), Positives = 66/127 (51%), Gaps = 9/127 (7%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL-ETLRSRLSVIPQDPVLFNG- 584
++G GAGK++LL L +SG+I D DI + + +R ++++P+ +F+
Sbjct: 36 LIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRM 95
Query: 585 TIRYNLDPFGRCHDTELW-DALEKSH-LKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLAR 642
T+ NL G + + + + ++ + L ++ R + + +S GE+Q+L + R
Sbjct: 96 TVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQ-----RAGTMSGGEQQMLAIGR 150
Query: 643 ALLRKTK 649
AL+ + +
Sbjct: 151 ALMSQPR 157
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 44.3 bits (105), Expect = 1e-04
Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 25/135 (18%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS----VELETLRSRLSVIPQDPVL 581
I GR+G+GK++L+ + L G+I ++ + + L + R+ + Q+ L
Sbjct: 27 AIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARL 86
Query: 582 F-NGTIRYNLD--------PFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSL 632
F + ++R NL R + + L HL ++ +LS
Sbjct: 87 FPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLP------------GRLSG 134
Query: 633 GEKQLLCLARALLRK 647
GEKQ + + RALL
Sbjct: 135 GEKQRVAIGRALLSS 149
Score = 37.8 bits (88), Expect = 0.016
Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 457 VSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS----VELETLRS 512
F + I GR+G+GK++L+ + L G+I ++ + + L +
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75
Query: 513 RLSVIPQDPVLF 524
R+ + Q+ LF
Sbjct: 76 RIGYVFQEARLF 87
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 43.2 bits (102), Expect = 2e-04
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ KN+S R+ + N+S + G++G GAGKS+LL + ++ +SG+I
Sbjct: 1 LETKNLSKRFGKQ--TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEII 58
Query: 497 ID 498
D
Sbjct: 59 FD 60
Score = 42.0 bits (99), Expect = 5e-04
Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 9/124 (7%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
G++G GAGKS+LL + ++ +SG+I D +L + S+I P+ N T
Sbjct: 30 GLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIG---SLIESPPLYENLT 86
Query: 586 IRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALL 645
R NL + H T L L S + + + + Q SLG KQ L +A ALL
Sbjct: 87 ARENL----KVHTTLL--GLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALL 140
Query: 646 RKTK 649
K
Sbjct: 141 NHPK 144
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 44.1 bits (104), Expect = 2e-04
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I VS Y D V+ +SF + GE G++G GAGKS++ + + +G+I
Sbjct: 42 IDLAGVSKSYGDK--AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKIT 99
Query: 497 IDDFDIASVELETLRSRLSVIPQ 519
+ + + R+R+ V+PQ
Sbjct: 100 VLGVPVPA-RARLARARIGVVPQ 121
Score = 43.3 bits (102), Expect = 2e-04
Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 18/128 (14%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQ-DPVLFNG 584
G++G GAGKS++ + + +G+I + + + R+R+ V+PQ D +
Sbjct: 71 GLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPA-RARLARARIGVVPQFDNLDLEF 129
Query: 585 TIRYNLDPFGR-----CHDTE--LWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQL 637
T+R NL FGR + E + LE + L+SK D + LS G K+
Sbjct: 130 TVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA---------DARVSDLSGGMKRR 180
Query: 638 LCLARALL 645
L LARAL+
Sbjct: 181 LTLARALI 188
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 43.5 bits (102), Expect = 2e-04
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 454 LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR 513
L VSF I GE + I+G+ G+GKS+ + L E G++KID + + + LR +
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82
Query: 514 LSVIPQDPVLFNGIVGRT 531
+ ++ Q+P N VG T
Sbjct: 83 IGMVFQNPD--NQFVGAT 98
Score = 31.2 bits (70), Expect = 1.5
Identities = 16/53 (30%), Positives = 31/53 (58%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP 579
I+G+ G+GKS+ + L E G++KID + + + LR ++ ++ Q+P
Sbjct: 38 IIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNP 90
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 43.4 bits (103), Expect = 2e-04
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 454 LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL--- 510
+VSF + GE +GIVG +G+GK++LL AL + +G++ D +L L
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81
Query: 511 ------RSRLSVIPQDP 521
R+ + Q P
Sbjct: 82 ERRRLLRTEWGFVHQHP 98
Score = 33.0 bits (76), Expect = 0.35
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL---------RSRLSVIP 576
GIVG +G+GK++LL AL + +G++ D +L L R+ +
Sbjct: 36 GIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVH 95
Query: 577 QDP 579
Q P
Sbjct: 96 QHP 98
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 43.3 bits (102), Expect = 2e-04
Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 16/140 (11%)
Query: 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSS-----GQIKIDDFDIASVELET--LR 569
IP++ V ++G +G GKS+LL R+ +L G I + +I + LR
Sbjct: 29 IPKNRV--TALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALR 86
Query: 570 SRLSVIPQDPVLFNGTIRYNLDPFGRCH---DTELWDALEKSHLKSKVV--TMRSKLDSD 624
++ ++ Q P F +I N+ R H + + D + + LK + ++ +L
Sbjct: 87 RKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDS 146
Query: 625 VQGDQLSLGEKQLLCLARAL 644
LS G++Q LC+AR L
Sbjct: 147 ALS--LSGGQQQRLCIARTL 164
Score = 36.0 bits (83), Expect = 0.042
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS---- 492
+ KN++L Y + L +++ I ++G +G GKS+LL R+ +L
Sbjct: 7 LSTKNLNLWYGEKHALY--DITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRI 64
Query: 493 -GQIKIDDFDIASVELET--LRSRLSVIPQDPVLF 524
G I + +I + LR ++ ++ Q P F
Sbjct: 65 TGDILYNGENIMDSGADVVALRRKIGMVFQRPNPF 99
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 43.7 bits (104), Expect = 2e-04
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV----ELS 491
+K + V Y D V+ + + GE I +VG +G GKS+LL R+V ++
Sbjct: 3 GLKLQAVRKSY-DGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLL----RMVAGLERIT 57
Query: 492 SGQIKIDD 499
SG+I I
Sbjct: 58 SGEIWIGG 65
Score = 32.9 bits (76), Expect = 0.47
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 8/35 (22%)
Query: 527 IVGRTGAGKSSLLVALFRLV----ELSSGQIKIDD 557
+VG +G GKS+LL R+V ++SG+I I
Sbjct: 35 LVGPSGCGKSTLL----RMVAGLERITSGEIWIGG 65
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 43.2 bits (102), Expect = 2e-04
Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 432 PRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSS---LLVALFRLV 488
+ ++FK+VS Y D+ L ++SF I G ++G G+GKS+ L+ L
Sbjct: 1 MKDNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPD 60
Query: 489 ELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRT 531
+ + +I +D + + + +R ++ ++ Q+P N VG T
Sbjct: 61 DNPNSKITVDGITLTAKTVWDIREKVGIVFQNPD--NQFVGAT 101
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 43.5 bits (103), Expect = 2e-04
Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 21/130 (16%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE----LETLRSRLSVIPQDPVLF 582
+ G +G+GK+SL+ + L G+I+++ + E L + R+ + QD LF
Sbjct: 29 LFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLF 88
Query: 583 -----NGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQL 637
G +RY + R +L L HL + LS GEKQ
Sbjct: 89 PHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHL---LDRYPGT---------LSGGEKQR 136
Query: 638 LCLARALLRK 647
+ + RALL
Sbjct: 137 VAIGRALLTA 146
Score = 30.0 bits (68), Expect = 4.0
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 469 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE----LETLRSRLSVIPQDPVLF 524
+ G +G+GK+SL+ + L G+I+++ + E L + R+ + QD LF
Sbjct: 29 LFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLF 88
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 43.2 bits (102), Expect = 2e-04
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 15/140 (10%)
Query: 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDI--ASVELETLR 569
IP+ V +G +G GKS+ L L R+ + +G+I +D DI +++ LR
Sbjct: 42 IPEKTV--TAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELR 99
Query: 570 SRLSVIPQDPVLFNGTIRYNLDPFGRCH-----DTELWDALEKSHLKSKVVTMRSKLDSD 624
+R+ ++ Q P F +I N+ R H EL + +E S L+ + K
Sbjct: 100 ARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETS-LRKAGLWEEVKDRLH 158
Query: 625 VQGDQLSLGEKQLLCLARAL 644
G LS G++Q LC+ARA+
Sbjct: 159 EPGTGLSGGQQQRLCIARAI 178
Score = 35.5 bits (82), Expect = 0.061
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----S 491
++ ++VS+ Y + L +V I +G +G GKS+ L L R+ +
Sbjct: 20 MRARDVSVFYGEKQ--ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRV 77
Query: 492 SGQIKIDDFDI--ASVELETLRSRLSVIPQDP 521
+G+I +D DI +++ LR+R+ ++ Q P
Sbjct: 78 TGKITLDGEDIYDPRLDVVELRARVGMVFQKP 109
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 44.0 bits (105), Expect = 2e-04
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 13/82 (15%)
Query: 432 PRQGT--IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV- 488
PR G I+ +N+S + D L++ ++SF + G +GI+G GAGKS+ LF+++
Sbjct: 318 PRLGDKVIEAENLSKSFGDR--LLIDDLSFSLPPGGIVGIIGPNGAGKST----LFKMIT 371
Query: 489 ---ELSSGQIKI-DDFDIASVE 506
+ SG IKI + +A V+
Sbjct: 372 GQEQPDSGTIKIGETVKLAYVD 393
Score = 34.7 bits (81), Expect = 0.16
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLL 481
+L ++S G IG++G GAGKS+LL
Sbjct: 22 ILKDISLSFFPGAKIGVLGLNGAGKSTLL 50
Score = 30.1 bits (69), Expect = 4.4
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 9/44 (20%)
Query: 526 GIVGRTGAGKSSLLVALFRLV----ELSSGQIKI-DDFDIASVE 564
GI+G GAGKS+ LF+++ + SG IKI + +A V+
Sbjct: 354 GIIGPNGAGKST----LFKMITGQEQPDSGTIKIGETVKLAYVD 393
Score = 28.9 bits (66), Expect = 9.6
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 526 GIVGRTGAGKSSLL 539
G++G GAGKS+LL
Sbjct: 37 GVLGLNGAGKSTLL 50
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 43.3 bits (102), Expect = 2e-04
Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 14/130 (10%)
Query: 527 IVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIAS--VELETLRSRLSVIPQDP 579
I+G +G GKS+ L A+ R+ +L ++G + D DI + LR ++ ++ Q P
Sbjct: 70 IIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKP 129
Query: 580 VLFNGTIRYNLDPFGRCH----DTELWDALEKSHLKSKVV-TMRSKLDSDVQGDQLSLGE 634
F +I N+ R H +L + +EKS K+ + + +LD + G LS G+
Sbjct: 130 NPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALG--LSGGQ 187
Query: 635 KQLLCLARAL 644
+Q LC+AR L
Sbjct: 188 QQRLCVARTL 197
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 42.9 bits (101), Expect = 2e-04
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 456 NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL----- 510
+VSF + GE +GIVG +G+GKS+LL L + G A +EL L
Sbjct: 21 DVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80
Query: 511 ----RSRLSVIPQDP 521
R+ + Q+P
Sbjct: 81 RRLMRTEWGFVHQNP 95
Score = 34.4 bits (79), Expect = 0.15
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL---------RSRLSVIP 576
GIVG +G+GKS+LL L + G A +EL L R+ +
Sbjct: 33 GIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVH 92
Query: 577 QDP 579
Q+P
Sbjct: 93 QNP 95
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 42.8 bits (101), Expect = 3e-04
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
I+ KN+ ++ VL + + GE + I+G +G+GK++LL + L + +G I
Sbjct: 3 AIEVKNLVKKFHGQ--TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTI 60
Query: 496 KIDDFDI 502
++ D I
Sbjct: 61 RVGDITI 67
Score = 32.0 bits (73), Expect = 0.71
Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 22/133 (16%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI-ASVELETLRSRLSVIPQD-PVLFNG 584
I+G +G+GK++LL + L + +G I++ D I + L + + + Q +F
Sbjct: 34 IIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQN 93
Query: 585 TIRYNLDPFGRCHDTELWDALE-----KSHLKSKVVTMRSKLDSDV--QGDQ------LS 631
+NL P H T L + +E K K + +L + V G + LS
Sbjct: 94 ---FNLFP----HRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLS 146
Query: 632 LGEKQLLCLARAL 644
G++Q + +ARAL
Sbjct: 147 GGQQQRVAIARAL 159
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 42.8 bits (101), Expect = 3e-04
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 456 NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL----R 511
+VSF + GE +GIVG +G+GK++LL + + +G + D +L T+ R
Sbjct: 24 DVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83
Query: 512 SRL-----SVIPQDP 521
RL + Q+P
Sbjct: 84 RRLLRTEWGFVHQNP 98
Score = 32.0 bits (73), Expect = 0.75
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL----RSRL-----SVIP 576
GIVG +G+GK++LL + + +G + D +L T+ R RL +
Sbjct: 36 GIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVH 95
Query: 577 QDP 579
Q+P
Sbjct: 96 QNP 98
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 42.8 bits (101), Expect = 3e-04
Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 12/132 (9%)
Query: 527 IVGRTGAGKSSLLVALFRL---VELS--SGQIKIDDFDIAS--VELETLRSRLSVIPQDP 579
++G +G+GKS+ L +L R+ ++++ +GQI DI + + +R + ++ Q P
Sbjct: 51 LIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRP 110
Query: 580 VLFNGTIRYN----LDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEK 635
F +I N L+ G L + +E S LK + + K D LS G++
Sbjct: 111 NPFAKSIYENITFALERAGVKDKKVLDEIVETS-LKQAALWDQVKDDLHKSALTLSGGQQ 169
Query: 636 QLLCLARALLRK 647
Q LC+ARA+ K
Sbjct: 170 QRLCIARAIAVK 181
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 42.6 bits (100), Expect = 3e-04
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 13/80 (16%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV------- 505
VL VS + N G+ I I+G +G+GKS+ L + L + S G I ++ I V
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79
Query: 506 ------ELETLRSRLSVIPQ 519
+L LR+RL+++ Q
Sbjct: 80 KVADKNQLRLLRTRLTMVFQ 99
Score = 34.9 bits (80), Expect = 0.095
Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 40/145 (27%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV-------------ELETLRSRLS 573
I+G +G+GKS+ L + L + S G I ++ I V +L LR+RL+
Sbjct: 36 IIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLT 95
Query: 574 VIPQDPVLFNGTIRYNLDPFGRCHDTELWDALE---------KSHLKSKVVTMRSK--LD 622
++ Q +NL H T L + +E K + + V +K +D
Sbjct: 96 MVFQ---------HFNL----WSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGID 142
Query: 623 SDVQGD---QLSLGEKQLLCLARAL 644
QG LS G++Q + +ARAL
Sbjct: 143 ERAQGKYPVHLSGGQQQRVSIARAL 167
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 43.6 bits (103), Expect = 3e-04
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 12/76 (15%)
Query: 502 IASVELETLRS--RLSVIPQDPVLFNGIVGRTGAGKSSLL----VALFRLVELSSGQIKI 555
I + L+ RS + + IVG GAGKSS+L AL+ +
Sbjct: 3 ILRLRLKNFRSFKDIDIEKLFDSGIFLIVGPNGAGKSSILDAITFALYGKTPRLGAF-SL 61
Query: 556 DDF-----DIASVELE 566
DD ASVELE
Sbjct: 62 DDLIRAGEKSASVELE 77
Score = 43.2 bits (102), Expect = 4e-04
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 11/65 (16%)
Query: 454 LANVSFRINHGENI-GIVGRTGAGKSSLL----VALFRLVELSSGQIKIDDF-----DIA 503
++ I IVG GAGKSS+L AL+ +DD A
Sbjct: 14 FKDIDIEKLFDSGIFLIVGPNGAGKSSILDAITFALYGKTPRLGAF-SLDDLIRAGEKSA 72
Query: 504 SVELE 508
SVELE
Sbjct: 73 SVELE 77
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 43.2 bits (102), Expect = 4e-04
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 455 ANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD----FDIASVELETL 510
N S I GE ++G +G+GKS+LL A+ L +S G + + D D+A+ + TL
Sbjct: 41 HNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATL 100
Query: 511 R 511
R
Sbjct: 101 R 101
Score = 32.8 bits (75), Expect = 0.59
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDD----FDIASVELETLR 569
++G +G+GKS+LL A+ L +S G + + D D+A+ + TLR
Sbjct: 55 LMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLR 101
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 42.3 bits (99), Expect = 4e-04
Identities = 44/166 (26%), Positives = 78/166 (46%), Gaps = 22/166 (13%)
Query: 495 IKID--DFDIASVELETLRS-RLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVEL--- 548
+KID D + + L+ + + + V F +G +G GKS+ L R+ +L
Sbjct: 2 VKIDARDVNFWYGDFHALKGISMEIEEKSVVAF---IGPSGCGKSTFLRLFNRMNDLIPA 58
Query: 549 --SSGQIKIDDFDI--ASVELETLRSRLSVIPQDPVLFNGTI----RYNLDPFGRCHDTE 600
G+I+ID +I V+++ LR + ++ Q P F +I Y L G +
Sbjct: 59 TRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAF 118
Query: 601 LWDALEKSHLKSKVV--TMRSKLDSDVQGDQLSLGEKQLLCLARAL 644
+ +E++ LK + ++ KL LS G++Q LC+ARA+
Sbjct: 119 IRQRVEET-LKGAALWDEVKDKLKESAFA--LSGGQQQRLCIARAM 161
Score = 40.0 bits (93), Expect = 0.002
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----S 491
I ++V+ Y D L +S I + +G +G GKS+ L R+ +L
Sbjct: 4 IDARDVNFWYGDFH--ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRL 61
Query: 492 SGQIKIDDFDI--ASVELETLRSRLSVIPQDPVLF 524
G+I+ID +I V+++ LR + ++ Q P F
Sbjct: 62 EGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPF 96
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 43.2 bits (102), Expect = 4e-04
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL 510
VL +S I GE + IVG +G+GKS+L+ L L + +SG ++ D+A+++ + L
Sbjct: 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADAL 80
Score = 37.0 bits (86), Expect = 0.034
Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 21/131 (16%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL----RSRLSVIPQDPVLF 582
IVG +G+GKS+L+ L L + +SG ++ D+A+++ + L R I Q
Sbjct: 39 IVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQ----- 93
Query: 583 NGTIRYNLDP-FGRCHDTEL---WDALEKSHLKSKVVTMRSKLD----SDVQGDQLSLGE 634
RY+L + E+ + LE+ + + +L + Q QLS G+
Sbjct: 94 ----RYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQ 149
Query: 635 KQLLCLARALL 645
+Q + +ARAL+
Sbjct: 150 QQRVSIARALM 160
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 42.5 bits (100), Expect = 5e-04
Identities = 37/128 (28%), Positives = 65/128 (50%), Gaps = 13/128 (10%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGT 585
++G +G GK++LL L + SG I +D D+ +V LR ++++ Q LF + T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPH-LRH-INMVFQSYALFPHMT 58
Query: 586 IRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGD----QLSLGEKQLLCLA 641
+ N+ FG + ++ +K +V+ + + D QLS G++Q + LA
Sbjct: 59 VEENV-AFGL-----KMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALA 112
Query: 642 RALLRKTK 649
RAL+ K K
Sbjct: 113 RALVFKPK 120
Score = 34.0 bits (78), Expect = 0.25
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 469 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF 524
++G +G GK++LL L + SG I +D D+ +V LR ++++ Q LF
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPH-LRH-INMVFQSYALF 54
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 41.9 bits (98), Expect = 5e-04
Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 26/137 (18%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKID-------------DFDIASVELETLRSRL 572
++G +G GKS+ L L R+ +L G IKI+ +FDI LE LR ++
Sbjct: 37 ALIGPSGCGKSTFLRTLNRMNDLVEG-IKIEGNVIYEGKNIYSNNFDI----LE-LRRKI 90
Query: 573 SVIPQDPVLFNGTIRYNLDPFGRCHDT----ELWDALEKSHLKSKVVT-MRSKLDSDVQG 627
++ Q P F +I N+ + H T +L + +E+S KS + ++ KL+++
Sbjct: 91 GMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNAL- 149
Query: 628 DQLSLGEKQLLCLARAL 644
LS G++Q LC+AR L
Sbjct: 150 -SLSGGQQQRLCIARTL 165
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 42.1 bits (99), Expect = 5e-04
Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 12/159 (7%)
Query: 495 IKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELS----- 549
I + + I+ E +++ IP+ V ++G +G GKS++L +L R+ +L
Sbjct: 14 ISLQNVTISYGTFEAVKNVFCDIPRGKV--TALIGPSGCGKSTVLRSLNRMNDLIEGCSL 71
Query: 550 SGQIKIDDFDI--ASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFG-RCHD-TELWDAL 605
G++ D D+ V+ +R R+ ++ Q P F +I N+ FG R + T D L
Sbjct: 72 KGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENI-AFGARINGYTGDMDEL 130
Query: 606 EKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARAL 644
+ L+ V K + G LS G++Q LC+AR +
Sbjct: 131 VERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTI 169
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 41.4 bits (97), Expect = 6e-04
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+ V Y + GE + I+G +GAGKS+LL + +E +SG IK
Sbjct: 1 LALDKVRYEYEHLP----MEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIK 56
Query: 497 IDDFD 501
++D
Sbjct: 57 VNDQS 61
Score = 39.1 bits (91), Expect = 0.004
Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 5/121 (4%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG-T 585
I+G +GAGKS+LL + +E +SG IK++D L + +S++ Q+ LF T
Sbjct: 29 IMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTG--LAPYQRPVSMLFQENNLFAHLT 86
Query: 586 IRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALL 645
+R N+ G +L +A ++ + + D +QLS G++Q + LAR L+
Sbjct: 87 VRQNIG-LGLHPGLKL-NAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLV 144
Query: 646 R 646
R
Sbjct: 145 R 145
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 41.3 bits (97), Expect = 6e-04
Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 13/125 (10%)
Query: 527 IVGRTGAGKSSL--LVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-N 583
IVG +G+GKS+L L+A F + SG++ I+ D+ + +S++ Q+ LF +
Sbjct: 29 IVGPSGSGKSTLLNLIAGFETPQ--SGRVLINGVDVTA--APPADRPVSMLFQENNLFAH 84
Query: 584 GTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQ--GDQLSLGEKQLLCLA 641
T+ N+ G +L + +V R L + +LS GE+Q + LA
Sbjct: 85 LTVEQNVG-LGLSPGLKL---TAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALA 140
Query: 642 RALLR 646
R L+R
Sbjct: 141 RVLVR 145
Score = 35.2 bits (81), Expect = 0.066
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 464 GENIGIVGRTGAGKSSL--LVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP 521
GE IVG +G+GKS+L L+A F + SG++ I+ D+ + +S++ Q+
Sbjct: 24 GEITAIVGPSGSGKSTLLNLIAGFETPQ--SGRVLINGVDVTA--APPADRPVSMLFQEN 79
Query: 522 VLF 524
LF
Sbjct: 80 NLF 82
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 41.4 bits (98), Expect = 7e-04
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV 505
+ +VS + GE +G++G GAGK++L + + SSG + DI +
Sbjct: 19 AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGL 71
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 41.6 bits (98), Expect = 7e-04
Identities = 29/105 (27%), Positives = 55/105 (52%), Gaps = 18/105 (17%)
Query: 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493
+ ++ +++ RY ++ VL VS + N G+ I I+G +G+GKS+ L + L + S+G
Sbjct: 4 ENALEVEDLHKRYGEHE--VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAG 61
Query: 494 QIKIDDFDIASV-------------ELETLRSRLSVIPQDPVLFN 525
I+++ +I +L+ LR+RL ++ Q FN
Sbjct: 62 SIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQH---FN 103
Score = 31.2 bits (71), Expect = 1.6
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 29/139 (20%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV-------------ELETLRSRLS 573
I+G +G+GKS+ L + L + S+G I+++ +I +L+ LR+RL
Sbjct: 37 IIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLG 96
Query: 574 VIPQD-------PVLFNGTIRYNLDPFGRCHDTELWDALEKS-HLKSKVVTMRSKLDSDV 625
++ Q VL N I + G +A+E++ +KV D
Sbjct: 97 MVFQHFNLWSHMTVLEN-VIEAPVHVLGVSKA----EAIERAEKYLAKVGIAEKA---DA 148
Query: 626 QGDQLSLGEKQLLCLARAL 644
LS G++Q + +ARAL
Sbjct: 149 YPAHLSGGQQQRVAIARAL 167
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 41.5 bits (98), Expect = 7e-04
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALF--RLVELSSGQIKIDDFDIASVELETL 510
+L V+ + GE I+G G+GKS+L + E++SG I D+ +E +
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDE- 73
Query: 511 RSRLSVI--PQDPVLFNGI 527
R+R + Q P G+
Sbjct: 74 RARAGLFLAFQYPEEIPGV 92
Score = 33.0 bits (76), Expect = 0.40
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 527 IVGRTGAGKSSLLVALF--RLVELSSGQIKIDDFDIASVELETLRSRLSVI--PQDPV 580
I+G G+GKS+L + E++SG I D+ +E + R+R + Q P
Sbjct: 31 IMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDE-RARAGLFLAFQYPE 87
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 41.0 bits (96), Expect = 8e-04
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 444 LRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKID 498
L + N V + F ++ GE + + G GAGK++LL L L+ + SGQI+ID
Sbjct: 17 LAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQID 71
Score = 31.7 bits (72), Expect = 0.86
Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 19/123 (15%)
Query: 529 GRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRY 588
G GAGK++LL L L+ + SGQI+ID + + L +P ++
Sbjct: 44 GDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLP--------GLKA 95
Query: 589 NLDPFGRCHDTELWDALEKSHLKS------KVVTMRSKLDSDVQGDQLSLGEKQLLCLAR 642
+L H L K +V + D+ V+ QLS G+K+ L LAR
Sbjct: 96 DLSTLENLH---FLCGLHGRRAKQMPGSALAIVGLAGYEDTLVR--QLSAGQKKRLALAR 150
Query: 643 ALL 645
L
Sbjct: 151 LWL 153
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 41.4 bits (97), Expect = 8e-04
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+K + ++ Y D L ++ I GE I+G GAGKS+L L +++ SSG+I
Sbjct: 6 LKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRIL 64
Query: 497 IDD--FDIASVELETLRSRLSVIPQDP 521
D D + L LR + ++ QDP
Sbjct: 65 FDGKPIDYSRKGLMKLRESVGMVFQDP 91
Score = 34.1 bits (78), Expect = 0.19
Identities = 44/202 (21%), Positives = 83/202 (41%), Gaps = 48/202 (23%)
Query: 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD--FDIASVELETLRSRLS 573
I + V I+G GAGKS+L L +++ SSG+I D D + L LR +
Sbjct: 28 NIKKGEV--TAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVG 85
Query: 574 VIPQDP--VLFNGTIRYNLDPFGRCH----DTELWDALEKSHLKSKVVTMRSKLDSDVQG 627
++ QDP LF+ ++ Y FG + + E+ ++ + ++ + ++ K
Sbjct: 86 MVFQDPDNQLFSASV-YQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDK-----PT 139
Query: 628 DQLSLGEKQLLCLARALLRKTK-----------------------KKKKSGVNITRPVTS 664
LS G+K+ + +A L+ + K + + + +T + +
Sbjct: 140 HCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIAT 199
Query: 665 ---------CDKVLVMDNGQAL 677
CD V VM G+ +
Sbjct: 200 HDIDIVPLYCDNVFVMKEGRVI 221
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 41.8 bits (98), Expect = 9e-04
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 454 LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELETL 510
L NVS + G+ G++G +GAGKS+L+ + L +SG + +D D+ ++ EL
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVAL 542
R ++ +I Q FN + RT G +L + L
Sbjct: 81 RRQIGMIFQH---FNLLSSRTVFGNVALPLEL 109
Score = 39.9 bits (93), Expect = 0.003
Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 22/161 (13%)
Query: 500 FDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559
F + ++ L + +P + G++G +GAGKS+L+ + L +SG + +D D
Sbjct: 11 FHQGTKTIQALNNVSLHVPAGQIY--GVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQD 68
Query: 560 IASV---ELETLRSRLSVIPQD-PVLFNGTIRYNLD-PFGRCHDTELWDALEKSHLKSKV 614
+ ++ EL R ++ +I Q +L + T+ N+ P EL D K +K KV
Sbjct: 69 LTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPL------EL-DNTPKDEIKRKV 121
Query: 615 ------VTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTK 649
V + K DS LS G+KQ + +ARAL K
Sbjct: 122 TELLALVGLGDKHDS--YPSNLSGGQKQRVAIARALASNPK 160
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 40.9 bits (97), Expect = 9e-04
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 10/104 (9%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS 512
L +VSF + GE G++G GAGK++L + + +SG + D DI + +
Sbjct: 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLP-PHEIA 73
Query: 513 RL---------SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVE 547
RL + P+ VL N +V S LL+A R E
Sbjct: 74 RLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREE 117
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 41.9 bits (99), Expect = 0.001
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
Query: 456 NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515
+VSF + GE +G+ G GAG++ L+ L+ + +SG + +D ++ +
Sbjct: 270 DVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRS--------- 320
Query: 516 VIPQDPVLFNGIV 528
PQD L NGIV
Sbjct: 321 --PQDG-LANGIV 330
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 41.0 bits (96), Expect = 0.001
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 15/109 (13%)
Query: 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493
Q I +V++ +R N L + SF + G +VG G+GKS+L AL V L+SG
Sbjct: 4 QAGIVVNDVTVTWR-NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASG 62
Query: 494 QIKIDDFDIASVELETLRSRL-SVIPQD-------PVLFNGIV--GRTG 532
+I I + + L+ L + +PQ PVL +V GR G
Sbjct: 63 KISI----LGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYG 107
Score = 32.2 bits (73), Expect = 0.82
Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 28/133 (21%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL-SVIPQD------- 578
+VG G+GKS+L AL V L+SG+I I + + L+ L + +PQ
Sbjct: 38 LVGVNGSGKSTLFKALMGFVRLASGKISI----LGQPTRQALQKNLVAYVPQSEEVDWSF 93
Query: 579 PVLFNGTI---RYNLDPFGR---CHDTELWD-ALEKSHLKSKVVTMRSKLDSDVQGDQLS 631
PVL + RY + R D ++ AL + + V R + Q +LS
Sbjct: 94 PVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDM----VEFRHR-----QIGELS 144
Query: 632 LGEKQLLCLARAL 644
G+K+ + LARA+
Sbjct: 145 GGQKKRVFLARAI 157
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 41.2 bits (96), Expect = 0.001
Identities = 45/148 (30%), Positives = 68/148 (45%), Gaps = 38/148 (25%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSS-----GQIKIDDFDIAS--VELETLRSRLSVIPQD 578
I+G +G GKS+ L L R+ EL S G+++ + +I V L LR ++S++
Sbjct: 37 AIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPK 96
Query: 579 PVLFNGTIRYN---------------LDPF--GRCHDTELWDALEKSHLKSKVVTMRSKL 621
P LF ++ N +D D +LWD +K K+ +S L
Sbjct: 97 PNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWD-----EIKHKI--HKSAL 149
Query: 622 DSDVQGDQLSLGEKQLLCLARALLRKTK 649
D LS G++Q LC+ARAL K K
Sbjct: 150 D-------LSGGQQQRLCIARALAVKPK 170
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 40.8 bits (96), Expect = 0.001
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS 512
L +SF I GE +G +G GAGK++ L L L++ +SG++++ + +
Sbjct: 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGL-VPWKRRKKFLR 94
Query: 513 RLSVI 517
R+ V+
Sbjct: 95 RIGVV 99
Score = 36.9 bits (86), Expect = 0.022
Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 29/138 (21%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVI---------- 575
G +G GAGK++ L L L++ +SG++++ + + R+ V+
Sbjct: 51 GFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGL-VPWKRRKKFLRRIGVVFGQKTQLWWD 109
Query: 576 --PQDPVLFNGTIRYNLDP--FGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLS 631
D I Y+L P F + D EL + L+ L LD+ V+ QLS
Sbjct: 110 LPVIDSFYLLAAI-YDLPPARFKKRLD-ELSELLDLEEL----------LDTPVR--QLS 155
Query: 632 LGEKQLLCLARALLRKTK 649
LG++ +A ALL + +
Sbjct: 156 LGQRMRAEIAAALLHEPE 173
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 41.6 bits (98), Expect = 0.001
Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 30/145 (20%)
Query: 520 DPVLFNGIV----GRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS-- 573
D L G V G GAGKS+L+ + +V SG ++I +RL+
Sbjct: 31 DFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGG---------NPCARLTPA 81
Query: 574 --------VIPQDPVLF-NGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSD 624
++PQ+P+LF N +++ N+ FG +K + + +LD D
Sbjct: 82 KAHQLGIYLVPQEPLLFPNLSVKENI-LFGLPKR-----QASMQKMKQLLAALGCQLDLD 135
Query: 625 VQGDQLSLGEKQLLCLARALLRKTK 649
L + ++Q++ + R L+R ++
Sbjct: 136 SSAGSLEVADRQIVEILRGLMRDSR 160
Score = 37.7 bits (88), Expect = 0.021
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 455 ANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE-LETLRSR 513
N+S + GE +G+ G GAG++ L L+ L G+I ++ +I ++ + L
Sbjct: 280 RNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339
Query: 514 LSVIPQD 520
L +P+D
Sbjct: 340 LVYLPED 346
Score = 35.0 bits (81), Expect = 0.15
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 19/82 (23%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS 512
VL + F ++ GE ++G GAGKS+L+ + +V SG ++I +
Sbjct: 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGG---------NPCA 76
Query: 513 RLS----------VIPQDPVLF 524
RL+ ++PQ+P+LF
Sbjct: 77 RLTPAKAHQLGIYLVPQEPLLF 98
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 40.4 bits (95), Expect = 0.001
Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 17/157 (10%)
Query: 495 IKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSL--LVALFRLVELSSGQ 552
+ +DD S +R L+V + V I+G +GAGKS+L L+A F +SG+
Sbjct: 2 LALDDVRF-SYGHLPMRFDLTVPAGEIV---AILGPSGAGKSTLLNLIAGF--ETPASGE 55
Query: 553 IKIDDFDIASVELETLRSRLSVIPQDPVLFNG-TIRYNLDPFGRCHDTELWDALEKSHLK 611
I I+ D + +S++ Q+ LF T+ N+ G +L +A ++ K
Sbjct: 56 ILINGVDHTA--SPPAERPVSMLFQENNLFAHLTVAQNIG-LGLSPGLKL-NAEQR--EK 109
Query: 612 SKVVTMRSKLDS--DVQGDQLSLGEKQLLCLARALLR 646
+ + L +LS G++Q + LAR L+R
Sbjct: 110 VEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVR 146
Score = 35.4 bits (82), Expect = 0.059
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSL--LVALFRLVELSSGQ 494
+ +V Y + P+ + GE + I+G +GAGKS+L L+A F +SG+
Sbjct: 2 LALDDVRFSY-GHLPMRF---DLTVPAGEIVAILGPSGAGKSTLLNLIAGF--ETPASGE 55
Query: 495 IKIDDFDIA 503
I I+ D
Sbjct: 56 ILINGVDHT 64
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 40.7 bits (95), Expect = 0.001
Identities = 37/133 (27%), Positives = 68/133 (51%), Gaps = 14/133 (10%)
Query: 527 IVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDI--ASVELETLRSRLSVIPQDP 579
++G +G GKS+ L ++ R+ +L S G+I + +I +++ + LR + ++ Q P
Sbjct: 52 LIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKP 111
Query: 580 VLFNGTIRYN----LDPFGRCHDTELWDALEKSHLKSKVV-TMRSKLDSDVQGDQLSLGE 634
F +I N L G + L + +E+S K+ + ++ +L S LS G+
Sbjct: 112 NPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSAL--SLSGGQ 169
Query: 635 KQLLCLARALLRK 647
+Q LC+AR L K
Sbjct: 170 QQRLCIARTLAMK 182
Score = 34.2 bits (78), Expect = 0.19
Identities = 22/100 (22%), Positives = 51/100 (51%), Gaps = 9/100 (9%)
Query: 432 PRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL- 490
++ ++ K++S+ Y + + ++S I ++G +G GKS+ L ++ R+ +L
Sbjct: 17 AKEHILEVKDLSIYYGEK--RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLI 74
Query: 491 ----SSGQIKIDDFDI--ASVELETLRSRLSVIPQDPVLF 524
S G+I + +I +++ + LR + ++ Q P F
Sbjct: 75 PSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPF 114
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 40.4 bits (95), Expect = 0.001
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
+I+ +NVS R+ ++ L +VS I GE + ++G +G+GK++LL + L SG I
Sbjct: 2 SIEVRNVSKRF-GDFV-ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTI 59
Query: 496 KIDDFDIASV 505
D V
Sbjct: 60 LFGGEDATDV 69
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 40.4 bits (95), Expect = 0.001
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 434 QGT-IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS 492
QGT + VS RY + VL + I G+ + +VGR+G GKS+LL L L S+
Sbjct: 9 QGTPLLLNAVSKRYGER--TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSA 66
Query: 493 GQI 495
G++
Sbjct: 67 GEL 69
Score = 31.2 bits (71), Expect = 1.4
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQI 553
F +VGR+G GKS+LL L L S+G++
Sbjct: 40 FVAVVGRSGCGKSTLLRLLAGLETPSAGEL 69
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 40.6 bits (95), Expect = 0.002
Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 19/127 (14%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG- 584
++G +G+GKS+LL + L + SG+I+++ D V ++ + Q LF
Sbjct: 30 ALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHAR--DRKIGFVFQHYALFKHL 87
Query: 585 TIRYNLDPFG---RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGD----QLSLGEKQL 637
T+R N+ FG R H +K++V + + + GD QLS G++Q
Sbjct: 88 TVRDNI-AFGLEIRKHPKAK--------IKARVEELLELVQLEGLGDRYPNQLSGGQRQR 138
Query: 638 LCLARAL 644
+ LARAL
Sbjct: 139 VALARAL 145
Score = 38.6 bits (90), Expect = 0.005
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+ N+S R+ L +V+ + G + ++G +G+GKS+LL + L + SG+I+
Sbjct: 1 IEIANISKRFGSF--QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIR 58
Query: 497 IDDFDIASVELE 508
++ D V
Sbjct: 59 LNGQDATRVHAR 70
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 41.1 bits (97), Expect = 0.002
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 434 QGTIKFKNVSLRYRDNWPLV--LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS 491
+ F + + P V L ++SF G+ ++G GAGKS+LL L +
Sbjct: 2 SPYLSFDGIGKTF----PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD 57
Query: 492 SGQIKID 498
+G I ID
Sbjct: 58 AGSILID 64
Score = 38.4 bits (90), Expect = 0.013
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 457 VSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKID 498
+SF + GE +G+ G GAG+S L+ L+ ++GQ+ +D
Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLD 313
Score = 29.5 bits (67), Expect = 7.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKID 556
G+ G GAG+S L+ L+ ++GQ+ +D
Sbjct: 283 GLFGLVGAGRSELMKLLYGATRRTAGQVYLD 313
Score = 29.1 bits (66), Expect = 9.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKID 556
++G GAGKS+LL L + +G I ID
Sbjct: 34 ALMGENGAGKSTLLKILSGNYQPDAGSILID 64
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 40.4 bits (94), Expect = 0.002
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 10/141 (7%)
Query: 513 RLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELS-----SGQIKIDDFDI--ASVEL 565
R S +P G +G +G GKS++L +L R+ +L G + D+ V+
Sbjct: 25 RDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84
Query: 566 ETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSH--LKSKVVTMRSKLDS 623
+R + ++ Q P F+ +I N+ FG + D ++ L+ + K
Sbjct: 85 VVVRRYIGMVFQQPNPFSMSIFDNV-AFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKL 143
Query: 624 DVQGDQLSLGEKQLLCLARAL 644
V G LS G++Q LC+ARA+
Sbjct: 144 KVSGLSLSGGQQQRLCIARAI 164
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 39.9 bits (94), Expect = 0.002
Identities = 31/121 (25%), Positives = 62/121 (51%), Gaps = 12/121 (9%)
Query: 439 FKNVSLRYR--DNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE---LSSG 493
+ +V L+ + + + +L +VS + G+ + I+G +G+GK++LL A+ VE +SG
Sbjct: 6 WWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSG 65
Query: 494 QIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQI 553
QI + + + + ++ + QD +L G+ R ++ A+ RL SS I
Sbjct: 66 QILFNG---QPRKPDQFQKCVAYVRQDDILLPGLTVR----ETLTYTAILRLPRKSSDAI 118
Query: 554 K 554
+
Sbjct: 119 R 119
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 40.7 bits (96), Expect = 0.002
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 454 LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS---VELETL 510
L VSF + G+ + +VG +G GKS+L L + + G++ D+ + L
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLL 90
Query: 511 RSRLSVIPQDP 521
R ++ ++ Q+P
Sbjct: 91 RQKIQIVFQNP 101
Score = 31.1 bits (71), Expect = 1.6
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS---VELETLRSRLSVIPQDP 579
+VG +G GKS+L L + + G++ D+ + LR ++ ++ Q+P
Sbjct: 46 VVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNP 101
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 40.9 bits (96), Expect = 0.002
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 454 LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI--------ASV 505
L +V+ + GE ++G GAGKS+L+ L + E + G I I++ + A +
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80
Query: 506 ELETLRSRLSVIPQDPVLFNGIVGR 530
+ + LSVI + VL N +GR
Sbjct: 81 GIGIIYQELSVIDELTVLENLYIGR 105
Score = 38.6 bits (90), Expect = 0.009
Identities = 23/102 (22%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 417 ITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAG 476
+ + F +K +++ + + +NV+ R R + ++SF + GE +G G G+G
Sbjct: 246 LQNRFNAMKENVSNLAHETVFEVRNVTSRDRKK----VRDISFSVCRGEILGFAGLVGSG 301
Query: 477 KSSLLVALFRLVELSSGQIKIDDFDIA-SVELETLRSRLSVI 517
++ L+ LF + + + G+I+++ DI+ L+ ++ ++ I
Sbjct: 302 RTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYI 343
Score = 35.5 bits (82), Expect = 0.10
Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 21/133 (15%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI--------ASVELETLRSRLSVIPQD 578
++G GAGKS+L+ L + E + G I I++ + A + + + LSVI +
Sbjct: 36 LLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDEL 95
Query: 579 PVLFNGTIRYNLDPFGRCHDTELW--DALEKSHLKSKVVTMRSKL----DSDVQGDQLSL 632
VL N I GR ++ + ++ ++ + M ++ D D + LS+
Sbjct: 96 TVLENLYI-------GRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSI 148
Query: 633 GEKQLLCLARALL 645
KQ+L +A+ L+
Sbjct: 149 SHKQMLEIAKTLM 161
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 39.9 bits (94), Expect = 0.002
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 440 KNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 499
+V++ R L +S + GE + +VG GAGKS+LL + L+ SG I+
Sbjct: 4 NDVAVSTR------LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAG 56
Query: 500 FDIASVELETL-RSRLSVIPQDPVLFN 525
+ + L R R + Q F
Sbjct: 57 QPLEAWSAAELARHRAYLSQQQTPPFA 83
Score = 29.9 bits (68), Expect = 4.0
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 9/122 (7%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL-RSRLSVIPQDPVLFNGT 585
+VG GAGKS+LL + L+ SG I+ + + L R R + Q F
Sbjct: 27 LVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMP 85
Query: 586 IRYNLDPFG--RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARA 643
+ L + + AL + ++ + + KL V QLS GE Q + LA
Sbjct: 86 VFQYLTLHQPDKTRTEAVASALNEV---AEALGLDDKLGRSVN--QLSGGEWQRVRLAAV 140
Query: 644 LL 645
+L
Sbjct: 141 VL 142
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 39.7 bits (93), Expect = 0.002
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+ +NVS+ + VL++VS + G+ + ++G GAGKS+L+ + LV G IK
Sbjct: 5 VSLENVSVSFGQR--RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK 62
Score = 34.3 bits (79), Expect = 0.14
Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 33/129 (25%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQ----DPVLF 582
++G GAGKS+L+ + LV G IK + + R+ +PQ D L
Sbjct: 35 LLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIGYVPQKLYLDTTLP 83
Query: 583 NGTIRY-NLDPFGRCHDTELWDALEK---SHLKSKVVTMRSKLDSDVQGDQLSLGEKQLL 638
R+ L P ++ AL++ HL +D+ +Q +LS GE Q +
Sbjct: 84 LTVNRFLRLRP--GTKKEDILPALKRVQAGHL----------IDAPMQ--KLSGGETQRV 129
Query: 639 CLARALLRK 647
LARALL +
Sbjct: 130 LLARALLNR 138
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 39.8 bits (93), Expect = 0.003
Identities = 20/63 (31%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Query: 437 IKFKNVSLRYRDNWPL-VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
++F +V+ R+ L VL ++F + GE + ++G +G+GKS++L L L + GQI
Sbjct: 1 VRFSDVTKRFG---ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQI 57
Query: 496 KID 498
+++
Sbjct: 58 QVE 60
Score = 29.0 bits (65), Expect = 7.1
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKID 556
++G +G+GKS++L L L + GQI+++
Sbjct: 31 LIGPSGSGKSTILRILMTLEPIDEGQIQVE 60
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 40.5 bits (95), Expect = 0.003
Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 27/172 (15%)
Query: 362 SVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLVPEGRGPITSEF 421
+ AL L L +T L FT RV T L L + + + + K E
Sbjct: 378 KAADALGRLMLAG-RDMTRLAGFTARVD--TLLQVL--DDVKSGNFKRPRVEEIESGREG 432
Query: 422 GQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLAN-------VSFRINHGENIGIVGRTG 474
G+ + P +G +++++ +++ +N PLV N +SF + G N+ I G G
Sbjct: 433 GRNSNLV---PGRGIVEYQDNGIKF-ENIPLVTPNGDVLIESLSFEVPSGNNLLICGPNG 488
Query: 475 AGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG 526
GKSSL L L + G++ + +L +PQ P + G
Sbjct: 489 CGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLG 529
Score = 35.9 bits (83), Expect = 0.084
Identities = 53/190 (27%), Positives = 80/190 (42%), Gaps = 27/190 (14%)
Query: 471 GRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV-IPQDPVLFNGIVG 529
GR G G++S LV +VE IK ++ + + + L LS +P L I G
Sbjct: 429 GREG-GRNSNLVPGRGIVEYQDNGIKFENIPLVTPNGDVLIESLSFEVPSGNNLL--ICG 485
Query: 530 RTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIR-- 587
G GKSSL L L + G++ + +L +PQ P + GT+R
Sbjct: 486 PNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQ 534
Query: 588 --Y---NLDPFGR-CHDTELWDALEKSHLKSKVVTMRSKLDSDVQG--DQLSLGEKQLLC 639
Y + D R D +L L+ L + ++ + VQ D LS GEKQ +
Sbjct: 535 IIYPDSSEDMKRRGLSDKDLEQILDNVQL-THILEREGGWSA-VQDWMDVLSGGEKQRIA 592
Query: 640 LARALLRKTK 649
+AR K +
Sbjct: 593 MARLFYHKPQ 602
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 39.8 bits (93), Expect = 0.003
Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 16/131 (12%)
Query: 527 IVGRTGAGKSSLLVALFRLVELS-----SGQIKIDDFDIASVELET--LRSRLSVIPQDP 579
++G +G+GKS+LL ++ R+ +L+ +G I + +I S +T LR + ++ Q P
Sbjct: 36 LIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQP 95
Query: 580 VLFNGTIR----YNLDPFGRCHDTELWDALEKSHLKSKVV--TMRSKLDSDVQGDQLSLG 633
F +I Y L G D ++ D + LK + ++ +L G LS G
Sbjct: 96 NPFPMSIYENVVYGLRLKG-IKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALG--LSGG 152
Query: 634 EKQLLCLARAL 644
++Q +C+AR L
Sbjct: 153 QQQRVCIARVL 163
Score = 34.0 bits (78), Expect = 0.18
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 9/95 (9%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS----- 491
++ ++S+ Y N L +VS E ++G +G+GKS+LL ++ R+ +L+
Sbjct: 6 LQVSDLSVYY--NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTI 63
Query: 492 SGQIKIDDFDIASVELET--LRSRLSVIPQDPVLF 524
+G I + +I S +T LR + ++ Q P F
Sbjct: 64 TGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPF 98
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 39.5 bits (92), Expect = 0.003
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+F++VS Y L V+F + GE + G +GAGKS+LL + + S+G+I
Sbjct: 2 IRFEHVSKAYLGGRQ-ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIW 60
Query: 497 IDDFDIA---SVELETLRSRLSVIPQD 520
DI + E+ LR ++ +I QD
Sbjct: 61 FSGHDITRLKNREVPFLRRQIGMIFQD 87
Score = 32.2 bits (73), Expect = 0.66
Identities = 40/132 (30%), Positives = 63/132 (47%), Gaps = 20/132 (15%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA---SVELETLRSRLSVIPQD-PVLF 582
+ G +GAGKS+LL + + S+G+I DI + E+ LR ++ +I QD +L
Sbjct: 33 LTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLM 92
Query: 583 NGTIRYNLD-PF---GRCHDT---ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEK 635
+ T+ N+ P G D + AL+K L K QLS GE+
Sbjct: 93 DRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPI---------QLSGGEQ 143
Query: 636 QLLCLARALLRK 647
Q + +ARA++ K
Sbjct: 144 QRVGIARAVVNK 155
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 40.3 bits (94), Expect = 0.003
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 18/63 (28%)
Query: 436 TIKFKNVSLRYR-DNWPL-----------------VLANVSFRINHGENIGIVGRTGAGK 477
+KF++V+ +Y+ N P L N+SF + GE +GI+G G+GK
Sbjct: 4 KVKFEHVTKKYKMYNKPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGK 63
Query: 478 SSL 480
S+L
Sbjct: 64 STL 66
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 40.2 bits (94), Expect = 0.003
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 456 NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV 505
+VS I GE ++G +G GKS+LL L + ++GQI +D D++ V
Sbjct: 37 DVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHV 86
Score = 39.0 bits (91), Expect = 0.006
Identities = 37/128 (28%), Positives = 67/128 (52%), Gaps = 13/128 (10%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NGT 585
++G +G GKS+LL L + ++GQI +D D++ V + ++++ Q LF + T
Sbjct: 50 LLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHV--PPYQRPINMMFQSYALFPHMT 107
Query: 586 IRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLD----SDVQGDQLSLGEKQLLCLA 641
+ N+ FG D L K+ + S+V M + + + QLS G++Q + LA
Sbjct: 108 VEQNI-AFGLKQDK-----LPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALA 161
Query: 642 RALLRKTK 649
R+L ++ K
Sbjct: 162 RSLAKRPK 169
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 39.4 bits (92), Expect = 0.003
Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 17/132 (12%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSS-----GQIKIDDFDIASVELET--LRSRLSVIPQDP 579
+G +G GKS+ L R+ + G++ ID D+ SV+ LR+++ ++ Q P
Sbjct: 36 FIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKP 95
Query: 580 VLFNGTIRYNLDPFGRCH-----DTELWDALEKSHLKSKVVTMRSKLDSDVQGD--QLSL 632
F +I N+ + H +L + +EKS V + +L ++ +LS
Sbjct: 96 NPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTS---VGLWEELGDRLKDSAFELSG 152
Query: 633 GEKQLLCLARAL 644
G++Q LC+ARA+
Sbjct: 153 GQQQRLCIARAI 164
Score = 36.0 bits (83), Expect = 0.047
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 440 KNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS-----GQ 494
KN++L Y +L +++ I E +G +G GKS+ L R+ + G+
Sbjct: 9 KNLNLWYGSKQ--ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGE 66
Query: 495 IKIDDFDIASVELET--LRSRLSVIPQDPVLF 524
+ ID D+ SV+ LR+++ ++ Q P F
Sbjct: 67 LDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPF 98
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 40.4 bits (95), Expect = 0.003
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 432 PRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLL 481
+ I N + Y D +L N+S+++N GE+ IVG GAGKS+LL
Sbjct: 256 ANEPRIVLNNGVVSYNDR--PILHNLSWQVNPGEHWQIVGPNGAGKSTLL 303
Score = 31.5 bits (72), Expect = 1.4
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 458 SFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD-IASVELETLRSRLS 515
S +N G++ VG G+GKS+L AL + L SG+ + F I + E L+ +S
Sbjct: 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGE-RQSQFSHITRLSFEQLQKLVS 80
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 40.0 bits (94), Expect = 0.003
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+ NV R+ L ++S I GE + ++G +GAGKS+LL + L +G+I+
Sbjct: 3 IRINNVKKRFGAF--GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIR 60
Query: 497 IDDFDIASVELETLRSR-LSVIPQDPVLF 524
++ + V +R R + + Q LF
Sbjct: 61 LNGRVLFDVSNLAVRDRKVGFVFQHYALF 89
Score = 34.6 bits (80), Expect = 0.16
Identities = 35/130 (26%), Positives = 65/130 (50%), Gaps = 20/130 (15%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR-LSVIPQDPVLF-N 583
++G +GAGKS+LL + L +G+I+++ + V +R R + + Q LF +
Sbjct: 32 ALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPH 91
Query: 584 GTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGD--------QLSLGE 634
T+ N+ FG + + ++ ++++V +L VQ + QLS G+
Sbjct: 92 MTVADNI-AFGLKVR----KERPSEAEIRARV----EELLRLVQLEGLADRYPAQLSGGQ 142
Query: 635 KQLLCLARAL 644
+Q + LARAL
Sbjct: 143 RQRVALARAL 152
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 40.4 bits (95), Expect = 0.003
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 502 IASVELETLRS-RLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQ----IKID 556
I ++++ RS + SV+ D + N I+G+ G+GKSS+L A+ + G +K D
Sbjct: 3 IEELKIKNFRSHKSSVVEFDDGI-NLIIGQNGSGKSSILEAILVGLYWGHGSKPKGLKKD 61
Query: 557 DF 558
DF
Sbjct: 62 DF 63
Score = 35.4 bits (82), Expect = 0.12
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 469 IVGRTGAGKSSLLVALFRLVELSSGQ----IKIDDF 500
I+G+ G+GKSS+L A+ + G +K DDF
Sbjct: 28 IIGQNGSGKSSILEAILVGLYWGHGSKPKGLKKDDF 63
>gnl|CDD|206743 cd11383, YfjP, YfjP GTPase. The Era (E. coli Ras-like
protein)-like YfjP subfamily includes several
uncharacterized bacterial GTPases that are similar to
Era. They generally show sequence conservation in the
region between the Walker A and B motifs (G1 and G3 box
motifs), to the exclusion of other GTPases. Era is
characterized by a distinct derivative of the KH domain
(the pseudo-KH domain) which is located C-terminal to
the GTPase domain.
Length = 140
Score = 38.1 bits (89), Expect = 0.003
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 468 GIVGRTGAGKSSLLVALFRL 487
G++G+TGAGKSSL ALF
Sbjct: 1 GLMGKTGAGKSSLCNALFGT 20
Score = 38.1 bits (89), Expect = 0.003
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 526 GIVGRTGAGKSSLLVALFRL 545
G++G+TGAGKSSL ALF
Sbjct: 1 GLMGKTGAGKSSLCNALFGT 20
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 38.9 bits (91), Expect = 0.005
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 439 FKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
+ + L + VL NVS + GE + ++GR+G GKS+L L L S G +
Sbjct: 13 YAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNV 69
Score = 32.0 bits (73), Expect = 0.94
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 10/127 (7%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELE---TLRSRLSVIPQDPV-L 581
++GR+G GKS+L L L S G + +A + R + ++ QD +
Sbjct: 42 ALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISA 101
Query: 582 FN--GTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQG--DQLSLGEKQL 637
N T+R + R H L D E+ S+++ DS + QLS G+ Q
Sbjct: 102 VNPRKTVREIIREPLR-HLLSL-DKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQR 159
Query: 638 LCLARAL 644
+CLARAL
Sbjct: 160 VCLARAL 166
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 38.9 bits (91), Expect = 0.005
Identities = 19/71 (26%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 456 NVSFRINHGENIGIVGRTGAGKSSLLVALFRL----VELSSGQIKIDDFDIASVELETLR 511
+++ + GE + +VG +G+GKS +A+ L + +SG+I +D + + ++R
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL---SIR 60
Query: 512 SR-LSVIPQDP 521
R ++ I Q+P
Sbjct: 61 GRHIATIMQNP 71
Score = 30.8 bits (70), Expect = 1.7
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Query: 526 GIVGRTGAGKSSLLVALFRL----VELSSGQIKIDDFDIASVELETLRSR-LSVIPQDP 579
+VG +G+GKS +A+ L + +SG+I +D + + ++R R ++ I Q+P
Sbjct: 16 ALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL---SIRGRHIATIMQNP 71
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 38.8 bits (91), Expect = 0.005
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-SSGQ 494
+I+ ++ Y + L +++ GE + ++G +GAGKSSLL L L+E+ SG
Sbjct: 2 SIQLNGINCFYGAHQ--ALFDITLDCPQGETLVLLGPSGAGKSSLLRVL-NLLEMPRSGT 58
Query: 495 IKI--DDFDIAS 504
+ I + FD +
Sbjct: 59 LNIAGNHFDFSK 70
Score = 31.9 bits (73), Expect = 0.97
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 34/141 (24%)
Query: 527 IVGRTGAGKSSLLVALFRLVEL-SSGQIKI--DDFDIASV----ELETLRSRLSVIPQDP 579
++G +GAGKSSLL L L+E+ SG + I + FD + + LR + ++ Q
Sbjct: 33 LLGPSGAGKSSLLRVL-NLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQ-- 89
Query: 580 VLFNGTIRYNLDPFGRCHDT---ELWDA------LEKSHLKSKVVTMRSKLDSDVQGD-- 628
+YNL P H T L +A L K ++ + +L D
Sbjct: 90 -------QYNLWP----HLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRF 138
Query: 629 --QLSLGEKQLLCLARALLRK 647
LS G++Q + +ARAL+ +
Sbjct: 139 PLHLSGGQQQRVAIARALMME 159
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 38.6 bits (90), Expect = 0.006
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 441 NVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDF 500
++SL Y L +VS I GE + ++G +G GK++LL + V S G I+++
Sbjct: 8 HLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGR 67
Query: 501 DIASVELETLRSRLSVIPQDPVLF 524
I E + V+ Q+ L
Sbjct: 68 RI-----EGPGAERGVVFQNEALL 86
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 38.2 bits (89), Expect = 0.006
Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 10/120 (8%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
+ G G+GK++LL L L +G++ ++ + R L + + ++
Sbjct: 31 VTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSV 90
Query: 587 RYNLDPFGRCHDTE-LWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALL 645
NL + H E + +AL + L D QLS G+++ + LAR LL
Sbjct: 91 LENLRFWHADHSDEQVEEALARVGLNGF---------EDRPVAQLSAGQQRRVALARLLL 141
Score = 37.5 bits (87), Expect = 0.012
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 447 RDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
RD + + +SF + GE + + G G+GK++LL L L +G++
Sbjct: 10 RD-GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRV 57
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 38.8 bits (90), Expect = 0.006
Identities = 42/147 (28%), Positives = 69/147 (46%), Gaps = 26/147 (17%)
Query: 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSG----------QIKIDDFDIASVELE 566
IP ++ +G +G GKS+LL R+ +L G I D I SV+L
Sbjct: 43 IPAKKII--AFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKL- 99
Query: 567 TLRSRLSVIPQDPVLFNGTIRYNLDPFGRCH------DTELWDALEKSHLKSKVVTMRSK 620
R ++ ++ Q P F +I N+ R + D + D+L ++ + +V + K
Sbjct: 100 --RRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEV---KDK 154
Query: 621 LDSDVQGDQLSLGEKQLLCLARALLRK 647
L +G LS G++Q LC+ARA+ K
Sbjct: 155 LKE--KGTALSGGQQQRLCIARAIAMK 179
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 38.5 bits (90), Expect = 0.006
Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 16/143 (11%)
Query: 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELS-----SGQIKIDDFDI--ASVELE 566
L++ P+ F +G +G GKS++L L R+ E+ G++ +D D+ V+
Sbjct: 25 LNIEPRSVTAF---IGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81
Query: 567 TLRSRLSVIPQDPVLF-NGTIRYN----LDPFGRCHDTELWDALEKSHLKSKVVTMRSKL 621
+R + ++ Q P F +IR N L G + +L + +EKS L+ + K
Sbjct: 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKS-LRGANLWNEVKD 140
Query: 622 DSDVQGDQLSLGEKQLLCLARAL 644
D G LS G++Q LC+ARA+
Sbjct: 141 RLDKPGGGLSGGQQQRLCIARAI 163
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 38.3 bits (89), Expect = 0.006
Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 27/120 (22%)
Query: 459 FRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIP 518
+ GE +G++G GAGK++LL A+ L+ + G +K +A + +P
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVK-----VAGASPGKGWRHIGYVP 55
Query: 519 QD-------PVLFNGIV--GRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR 569
Q P+ V GRTG + R + + DF L +
Sbjct: 56 QRHEFAWDFPISVAHTVMSGRTG------HIGWLR-------RPCVADFAAVRDALRRVG 102
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 38.6 bits (90), Expect = 0.008
Identities = 19/74 (25%), Positives = 42/74 (56%), Gaps = 8/74 (10%)
Query: 456 NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE----LSSGQIKIDDFDIASVELETLR 511
+S+ + GE +GIVG +G+GKS +A+ L++ + + +++ + D+ + + R
Sbjct: 25 RISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERR 84
Query: 512 ----SRLSVIPQDP 521
+ +++I QDP
Sbjct: 85 NLVGAEVAMIFQDP 98
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 38.3 bits (89), Expect = 0.008
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ +V+ R L +S + GE + +VG GAGKS+LL + + SG I+
Sbjct: 4 MQLNDVAESTR------LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQ 56
Query: 497 IDDFDIASVELETL 510
+ + L
Sbjct: 57 FAGQPLEAWSATEL 70
Score = 29.4 bits (66), Expect = 5.1
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL 568
+VG GAGKS+LL + + SG I+ + + L
Sbjct: 30 LVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATEL 70
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 38.5 bits (90), Expect = 0.009
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 502
L ++S + GE + ++G +G GK++LL + L ++G I DI
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDI 68
Score = 35.8 bits (83), Expect = 0.057
Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 35/134 (26%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS-------VIPQDP 579
++G +G GK++LL + L ++G I DI +RL ++ Q
Sbjct: 35 LLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDI---------TRLPPQKRDYGIVFQSY 85
Query: 580 VLF-NGT----IRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGD----QL 630
LF N T I Y L G + ++ + +V + + QL
Sbjct: 86 ALFPNLTVADNIAYGLKNRG----------MGRAEVAERVAELLDLVGLPGSERKYPGQL 135
Query: 631 SLGEKQLLCLARAL 644
S G++Q + LARAL
Sbjct: 136 SGGQQQRVALARAL 149
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 38.8 bits (91), Expect = 0.009
Identities = 43/132 (32%), Positives = 64/132 (48%), Gaps = 16/132 (12%)
Query: 456 NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE-LSSGQIKID--DFDIASVELETLRS 512
+VSF + GE +GI G GAG++ L+ LF G+I ID I + + +
Sbjct: 280 DVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNP-QQAIAQ 338
Query: 513 RLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR--- 569
++++P+D GIV G GK+ L AL R +G +IDD + EL+T+
Sbjct: 339 GIAMVPEDRKRD-GIVPVMGVGKNITLAALDRF----TGGSRIDD----AAELKTILESI 389
Query: 570 SRLSVIPQDPVL 581
RL V P L
Sbjct: 390 QRLKVKTASPEL 401
Score = 34.1 bits (79), Expect = 0.23
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 454 LANVSFRINHGENIGIVGRTGAGKSSLL 481
L NVS ++ GE + + G GAGKS+L+
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLM 48
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 38.5 bits (90), Expect = 0.009
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+ +NV+ Y D ++ +++ I+ GE + VG +G GKS+LL + L +++SG +
Sbjct: 4 VTLRNVTKAYGDV--VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLF 61
Query: 497 IDD 499
I +
Sbjct: 62 IGE 64
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 38.6 bits (90), Expect = 0.010
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 443 SLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVAL 484
SL+ R ++L N + IN G+ +G+VG+ G GKS+LL L
Sbjct: 6 SLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALL 47
Score = 37.8 bits (88), Expect = 0.017
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 10/82 (12%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ-- 494
+K + VS Y D ++L ++ + G IG++GR GAGKS+L+ L + SG+
Sbjct: 313 LKMEKVSAGYGDR--IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIG 370
Query: 495 ----IKIDDFDIASVELETLRS 512
IK+ F A +LE LR+
Sbjct: 371 LAKGIKLGYF--AQHQLEFLRA 390
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 37.5 bits (88), Expect = 0.011
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 447 RDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
RD ++ + +SF +N GE + I G GAGK+SLL L L +G++
Sbjct: 11 RD-ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEV 58
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 38.4 bits (89), Expect = 0.011
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLL--VALFRLVELSS 492
G I+ ++ + Y N VL ++S I GE + ++G++G GK++LL +A F +
Sbjct: 4 GGIRIDHLRVAYGAN--TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLT 61
Query: 493 GQIKIDDFDIASVELETLRSRLSVIPQDPVLF 524
G+I I D D+ + L+++ Q+ LF
Sbjct: 62 GRIAIADRDLT--HAPPHKRGLALLFQNYALF 91
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 38.2 bits (89), Expect = 0.012
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 459 FRINHGENIGIVGRTGAGKSSLLVALFRLVE---LSSGQIKIDDFDIASV---ELETLRS 512
F + GE +GIVG +G+GKS AL L+ G + +I ++ EL LR+
Sbjct: 37 FSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRA 96
Query: 513 -RLSVIPQDP 521
++S+I QDP
Sbjct: 97 EQISMIFQDP 106
Score = 30.1 bits (68), Expect = 3.7
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 526 GIVGRTGAGKSSLLVALFRLVE---LSSGQIKIDDFDIASV---ELETLRS-RLSVIPQD 578
GIVG +G+GKS AL L+ G + +I ++ EL LR+ ++S+I QD
Sbjct: 46 GIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQD 105
Query: 579 P 579
P
Sbjct: 106 P 106
>gnl|CDD|226124 COG3596, COG3596, Predicted GTPase [General function prediction
only].
Length = 296
Score = 37.8 bits (88), Expect = 0.014
Identities = 13/20 (65%), Positives = 17/20 (85%)
Query: 466 NIGIVGRTGAGKSSLLVALF 485
N+ ++G TGAGKSSL+ ALF
Sbjct: 41 NVLLMGATGAGKSSLINALF 60
Score = 35.2 bits (81), Expect = 0.086
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Query: 512 SRLSVIPQDPVLFNG-IVGRTGAGKSSLLVALF 543
L + ++PV N ++G TGAGKSSL+ ALF
Sbjct: 30 RMLQLTEKEPV--NVLLMGATGAGKSSLINALF 60
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 36.2 bits (83), Expect = 0.015
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 463 HGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV 522
GE I IVG G+GK++L AL R + G + D LE + +L +I
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYID---GEDILEEVLDQLLLIIVGGK 57
Query: 523 LFNGIVGR 530
+G
Sbjct: 58 KASGSGEL 65
Score = 30.8 bits (69), Expect = 1.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 557
IVG G+GK++L AL R + G + D
Sbjct: 6 LIVGPPGSGKTTLARALARELGPPGGGVIYID 37
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 37.4 bits (87), Expect = 0.017
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS 512
L VSF G +G +G GAGKS+ + + + SG +++ D+ E R+
Sbjct: 17 ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRN 76
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 36.9 bits (86), Expect = 0.017
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 436 TIKFKNVSLRYRDNWP--LVLANVSFRINHGENIGIVGRTGAGKSSLLVAL 484
T+ ++N+S +L + S + GE + ++GR G+G S+LL AL
Sbjct: 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKAL 53
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 37.4 bits (87), Expect = 0.020
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 456 NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 501
++SF I GE +G +G GAGKS+ L L L+ +SG+++++ D
Sbjct: 42 DISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKD 87
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 37.1 bits (86), Expect = 0.022
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+ +++ Y + L N++F I ++G GAGKS+L +++ +SG +
Sbjct: 4 IETRDLCYSYSGSKE-ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVL 62
Query: 497 IDDFDIASVELETLRSRLSVIPQDP 521
I I + +R + ++ Q+P
Sbjct: 63 IRGEPITKENIREVRKFVGLVFQNP 87
Score = 29.0 bits (65), Expect = 7.7
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP--VLFNG 584
++G GAGKS+L +++ +SG + I I + +R + ++ Q+P +F+
Sbjct: 35 VIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP 94
Query: 585 TIRYNLDPFGRCH---DTE 600
T+ ++ FG + D E
Sbjct: 95 TVEQDI-AFGPINLGLDEE 112
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 37.1 bits (86), Expect = 0.023
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 12/77 (15%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS----------SGQIKIDDFDI 502
+L ++S RI G ++GR GAGKS+LL AL +L+ +G + ++ +
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAG--DLTGGGAPRGARVTGDVTLNGEPL 73
Query: 503 ASVELETLRSRLSVIPQ 519
A+++ L +V+PQ
Sbjct: 74 AAIDAPRLARLRAVLPQ 90
>gnl|CDD|237727 PRK14489, PRK14489, putative bifunctional molybdopterin-guanine
dinucleotide biosynthesis protein MobA/MobB;
Provisional.
Length = 366
Score = 37.0 bits (86), Expect = 0.024
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 14/91 (15%)
Query: 412 EGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGEN----- 466
EG + F + +V+ D Q F NV N P L + +
Sbjct: 155 EGERRLFDFFQRQRVRYVDLSTQKDA-FFNV------NTPEDLEQLRAIPDGTTTGAPPL 207
Query: 467 IGIVGRTGAGKSSLLVALFRLVELSSGQIKI 497
+G+VG +G GK++LL L EL + +I
Sbjct: 208 LGVVGYSGTGKTTLLEKLIP--ELIARGYRI 236
Score = 30.1 bits (68), Expect = 3.9
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 506 ELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKI 555
+LE LR+ G+VG +G GK++LL L EL + +I
Sbjct: 189 DLEQLRAIPDGTTTGAPPLLGVVGYSGTGKTTLLEKLIP--ELIARGYRI 236
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 36.9 bits (85), Expect = 0.024
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 3/128 (2%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 583
F I+G G GKS+LL L RL+ + G + +D I + + R+ ++ Q+
Sbjct: 35 FTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPG 94
Query: 584 GTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQG---DQLSLGEKQLLCL 640
L GR L+ K ++ M++ + + D LS G++Q +
Sbjct: 95 DITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWI 154
Query: 641 ARALLRKT 648
A L ++T
Sbjct: 155 AMVLAQET 162
Score = 34.6 bits (79), Expect = 0.13
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS 512
V N++ I G I+G G GKS+LL L RL+ + G + +D I + +
Sbjct: 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81
Query: 513 RLSVIPQD 520
R+ ++ Q+
Sbjct: 82 RIGLLAQN 89
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 36.8 bits (86), Expect = 0.025
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVAL--FRLVELSSG 493
++ K++ + +L V+ + GE I+G G+GKS+L + E++ G
Sbjct: 3 MLEIKDLHVEVEGKKE-ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEG 61
Query: 494 QIKIDDFDIASVELETLRSRLSVIP--QDPVLFNGI 527
+I D DI + + R+R + Q PV G+
Sbjct: 62 EILFDGEDILELSPDE-RARAGIFLAFQYPVEIPGV 96
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 36.9 bits (85), Expect = 0.027
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Query: 435 GTIKFKNVSLRYRDNWPL---VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS 491
I NVS Y P L N S + ++G TG+GKS+++ L+
Sbjct: 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE 64
Query: 492 SGQIKIDDFDIAS-----VELETLRSRLSVIPQDP 521
+GQ + D+ I + E++ LR + ++ Q P
Sbjct: 65 TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFP 99
Score = 31.5 bits (71), Expect = 1.2
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS-----VELETLRSRLSVIPQDP-- 579
++G TG+GKS+++ L+ +GQ + D+ I + E++ LR + ++ Q P
Sbjct: 42 VIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEY 101
Query: 580 VLFNGTIRYNLDPFGRCH 597
LF TI ++ FG +
Sbjct: 102 QLFQETIEKDI-AFGPVN 118
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 37.2 bits (87), Expect = 0.028
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 448 DNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
DN PL N++ + GE + I+G G GK++LL L +E SG +K
Sbjct: 330 DNGPL-FKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVK 377
Score = 30.2 bits (69), Expect = 3.9
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 456 NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKID 498
N+S + G G++G G GKS+ + L +E S+G + +D
Sbjct: 19 NISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLD 61
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 36.7 bits (85), Expect = 0.030
Identities = 38/143 (26%), Positives = 71/143 (49%), Gaps = 24/143 (16%)
Query: 517 IPQDPVLFNGIVGRTGAGKSSLLVALFRLVEL-----SSGQI-----KIDDFDIASVELE 566
IP++ + +G +G GKS++L RL +L G++ + D+ VE+
Sbjct: 33 IPKNQI--TAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEV- 89
Query: 567 TLRSRLSVIPQDPVLFNGTIRYNLDPFG---RCHDTELWDALEKSHLKSKVV--TMRSKL 621
R R+ ++ Q P F +I N+ +G + ++ + +E+S L+ + ++ KL
Sbjct: 90 --RRRIGMVFQKPNPFPKSIYDNI-AYGARINGYKGDMDELVERS-LRQAALWDEVKDKL 145
Query: 622 DSDVQGDQLSLGEKQLLCLARAL 644
G LS G++Q LC+ARA+
Sbjct: 146 KQS--GLSLSGGQQQRLCIARAI 166
Score = 31.7 bits (72), Expect = 1.1
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----S 491
++ +N+++ Y L + NV I + +G +G GKS++L RL +L
Sbjct: 11 LRTENLNVYYGSF--LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRV 68
Query: 492 SGQI-----KIDDFDIASVELETLRSRLSVIPQDPVLF 524
G++ + D+ VE +R R+ ++ Q P F
Sbjct: 69 EGKVTFHGKNLYAPDVDPVE---VRRRIGMVFQKPNPF 103
>gnl|CDD|221957 pfam13175, AAA_15, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the AAA
superfamily.
Length = 320
Score = 36.6 bits (85), Expect = 0.032
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 459 FRINHGENIG-IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL 510
I+ E I I+G G+GK+++L AL L E I I D A ++ E L
Sbjct: 16 EEISLNEGINVIIGENGSGKTTILEALDNLKEKKKIYISISDN-KADIDKENL 67
Score = 34.3 bits (79), Expect = 0.18
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL 568
I+G G+GK+++L AL L E I I D A ++ E L
Sbjct: 27 IIGENGSGKTTILEALDNLKEKKKIYISISDN-KADIDKENL 67
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 36.4 bits (84), Expect = 0.034
Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 32/140 (22%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKI--DDFDIASVELET----LRSRLSVIPQDPV 580
++G +GAGKSSLL L L SG + I + FD + + LR + ++ Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQ--- 89
Query: 581 LFNGTIRYNLDPFGRCHDTELWDALE---------KSHLKSKVVTMRSKLDSDVQGD--- 628
+YNL P H T + +E K ++ + +L D
Sbjct: 90 ------QYNLWP----HLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP 139
Query: 629 -QLSLGEKQLLCLARALLRK 647
LS G++Q + +ARAL+ +
Sbjct: 140 LHLSGGQQQRVAIARALMME 159
Score = 33.7 bits (77), Expect = 0.21
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
+I+ ++ Y + L +++ GE + ++G +GAGKSSLL L L SG +
Sbjct: 2 SIQLNGINCFYGAHQ--ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 496 KI--DDFDIASVELE 508
I + FD + +
Sbjct: 60 NIAGNHFDFSKTPSD 74
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 36.1 bits (84), Expect = 0.034
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+K +++ Y + P+ + GE + I+G +GAGKS+LL + + +SG +
Sbjct: 2 LKLTDITWLY-HHLPM---RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLT 57
Query: 497 IDDFD 501
++ D
Sbjct: 58 LNGQD 62
Score = 29.6 bits (67), Expect = 5.0
Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 17/128 (13%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR--LSVIPQDPVLFNG 584
I+G +GAGKS+LL + + +SG + ++ D + T SR +S++ Q+ LF+
Sbjct: 30 ILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTT----TPPSRRPVSMLFQENNLFSH 85
Query: 585 -TIRYN----LDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLC 639
T+ N L+P G + + L + + + ++L QLS G++Q +
Sbjct: 86 LTVAQNIGLGLNP-GLKLNAAQREKLHAIARQMGIEDLLARLPG-----QLSGGQRQRVA 139
Query: 640 LARALLRK 647
LAR L+R+
Sbjct: 140 LARCLVRE 147
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 36.6 bits (85), Expect = 0.036
Identities = 16/53 (30%), Positives = 32/53 (60%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV 505
VL ++S I G+ + ++G +G+GK++LL + L +SG I+ D++ +
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRL 69
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 36.6 bits (85), Expect = 0.044
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 456 NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKI 497
+VSF ++ GE +GI G GA ++ ++ LF + E S+G I +
Sbjct: 266 DVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITL 307
Score = 32.0 bits (73), Expect = 1.1
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Query: 454 LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKID----DFDIASVELET 509
L NV+ ++ ++G GAGKS+LL LF + + SG I DF + LE
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALEN 73
Query: 510 ----LRSRLSVIPQDPVLFNGIVGR 530
+ L+++ Q V+ N +GR
Sbjct: 74 GISMVHQELNLVLQRSVMDNMWLGR 98
Score = 29.3 bits (66), Expect = 6.7
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQI 553
++G GAGKS+LL LF + + SG I
Sbjct: 29 LMGENGAGKSTLLKCLFGIYQKDSGSI 55
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 36.1 bits (83), Expect = 0.045
Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 22/136 (16%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELS-----SGQIKI--DDFDIASVELETL--RSRLSVIP 576
++G +G GKS+ L R+ +L G+I + D+ +I S E++ + R R+S++
Sbjct: 46 ALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVF 105
Query: 577 QDPVLFNGTIRYNLDPFGRCH--------DTELWDALEKSHLKSKVVTMRSKLDSDVQGD 628
Q P F +I N+ R + + +AL + L +V L ++ G
Sbjct: 106 QKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSG- 164
Query: 629 QLSLGEKQLLCLARAL 644
G++Q LC+ARAL
Sbjct: 165 ----GQQQRLCIARAL 176
Score = 29.6 bits (66), Expect = 5.6
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----SSGQIKI--DDFDIAS 504
L N++ ++ + ++G +G GKS+ L R+ +L G+I + D+ +I S
Sbjct: 30 QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89
Query: 505 VELETL--RSRLSVIPQDPVLF 524
E++ + R R+S++ Q P F
Sbjct: 90 PEVDPIEVRMRISMVFQKPNPF 111
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 36.0 bits (84), Expect = 0.048
Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 21/128 (16%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDD---FDIAS-VELETLRSRLSVIPQDPVLF 582
I GR+GAGK+SL+ A+ L G+I ++ FD + L + R+ + QD LF
Sbjct: 29 IFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLF 88
Query: 583 -----NGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQL 637
G +RY + ++ L L R LS GEKQ
Sbjct: 89 PHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLD-----RYPGS-------LSGGEKQR 136
Query: 638 LCLARALL 645
+ + RALL
Sbjct: 137 VAIGRALL 144
Score = 31.8 bits (73), Expect = 1.3
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 469 IVGRTGAGKSSLLVALFRLVELSSGQIKIDD---FDIAS-VELETLRSRLSVIPQDPVLF 524
I GR+GAGK+SL+ A+ L G+I ++ FD + L + R+ + QD LF
Sbjct: 29 IFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLF 88
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 35.7 bits (82), Expect = 0.059
Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 12/129 (9%)
Query: 527 IVGRTGAGKSSLLVALFRLVELS-----SGQIKIDDFDI--ASVELETLRSRLSVIPQDP 579
I+G +G GKS+ + L ++++ +G++ + +I V+L LR + ++ Q
Sbjct: 43 IIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKG 102
Query: 580 VLFNGTIRYNLDPFGRCHDT----ELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEK 635
F +I N+ R H T +L + +EKS LK + K Q LS G++
Sbjct: 103 NPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKS-LKDVALWDEVKDRLHTQALSLSGGQQ 161
Query: 636 QLLCLARAL 644
Q LC+ARAL
Sbjct: 162 QRLCIARAL 170
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 35.9 bits (83), Expect = 0.063
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 440 KNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 499
KN++ R+ N V+ N++ I G + ++G +G GK+++L + L + + GQI ID
Sbjct: 10 KNITKRFGSN--TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDG 67
Query: 500 FDI 502
D+
Sbjct: 68 EDV 70
Score = 29.7 bits (67), Expect = 4.8
Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 27/135 (20%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS----RLSVIPQDPVLF 582
++G +G GK+++L + L + + GQI ID D+ T RS + ++ Q LF
Sbjct: 37 LLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDV------THRSIQQRDICMVFQSYALF 90
Query: 583 -----NGTIRYNLDPFGRCHD---TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGE 634
+ Y L G + + +ALE +V + D V DQ+S G+
Sbjct: 91 PHMSLGENVGYGLKMLGVPKEERKQRVKEALE-------LVDLAGFEDRYV--DQISGGQ 141
Query: 635 KQLLCLARALLRKTK 649
+Q + LARAL+ K K
Sbjct: 142 QQRVALARALILKPK 156
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 917
Score = 36.2 bits (84), Expect = 0.068
Identities = 36/216 (16%), Positives = 73/216 (33%), Gaps = 40/216 (18%)
Query: 2 LFAFLMICFVFPWF---ALPLLIITTLYHLISKVFRSVY----------LRSVIQNMWSM 48
L + F + L LL I L + + V R + +++
Sbjct: 717 LTLLIYSLFNLFFLPLTPLQLLWINLLTDSLPALALGVEDPESDVMKRPPRGPEEGLFNR 776
Query: 49 -LFAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSTDEVFQNMWSMLFAFLMICF 107
+F ++ L I+T L +L+ + ++ L + Q F ++
Sbjct: 777 KIFWRFILIIGLLSAIL--FILTFLLYLLGFIANTLGLDLFQALLQTTA-----FTVLVL 829
Query: 108 VFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIIT 167
+ L + + F S L S ++L ++ L+I
Sbjct: 830 IQLLLT---LAVRSRGRP----FLSSLLFSNKYLWLALLVIIILQ-----------LLII 871
Query: 168 TLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVF 203
L L K+F+ L S+F+ + ++ A L++ V
Sbjct: 872 FLPPLNLKIFQPTPL-SLFEWLIAIAVALLLLYIVV 906
>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the AAA
superfamily.
Length = 154
Score = 34.5 bits (79), Expect = 0.068
Identities = 29/134 (21%), Positives = 56/134 (41%), Gaps = 11/134 (8%)
Query: 460 RINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIP- 518
R ++ + G +G GK+SLL L + +++G+ + + + LR L +
Sbjct: 20 RSGGPPSVLLTGPSGTGKTSLLRELLEGLLVAAGKCDQAERNPPYAFSQALRELLRQLLR 79
Query: 519 ----QDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIK-----IDDFDIASVE-LETL 568
+ +L ++ GA L L L+E + + +DD A E L+ L
Sbjct: 80 ELAAELLLLREALLAALGAELIEGLQDLVELLERLLARARPLVLVLDDLQWADEESLDLL 139
Query: 569 RSRLSVIPQDPVLF 582
+ L + + P+L
Sbjct: 140 AALLRRLERLPLLV 153
Score = 34.1 bits (78), Expect = 0.10
Identities = 17/72 (23%), Positives = 30/72 (41%)
Query: 506 ELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL 565
ELE L L + G +G GK+SLL L + +++G+ + +
Sbjct: 8 ELERLLDALRRARSGGPPSVLLTGPSGTGKTSLLRELLEGLLVAAGKCDQAERNPPYAFS 67
Query: 566 ETLRSRLSVIPQ 577
+ LR L + +
Sbjct: 68 QALRELLRQLLR 79
>gnl|CDD|219819 pfam08395, 7tm_7, 7tm Chemosensory receptor. This family includes
a number of gustatory and odorant receptors mainly from
insect species such as A. gambiae and D. melanogaster.
They are classified as G-protein-coupled receptors
(GPCRs), or seven-transmembrane receptors. They show
high sequence divergence, consistent with an ancient
origin for the family.
Length = 370
Score = 35.8 bits (83), Expect = 0.070
Identities = 32/220 (14%), Positives = 77/220 (35%), Gaps = 11/220 (5%)
Query: 72 LYHLISKVFRSVYLRSTDEVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFR 131
S++ + W L++ + L +L + + ++ R
Sbjct: 3 PLLYYSQLLGLFPFEFDRRRGRLRWRRRLYLLLLLIILFLLVLLVLFLISFIRILYFFRR 62
Query: 132 SVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWS 191
S L V+ + +++ + F L L + + ++ R + +N
Sbjct: 63 SALLEVVYNIQLVLGLLTVLVILLSLLFQRRRLAR--LLNELLRLDRRLLRLGSRRNFRR 120
Query: 192 MLFAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFP 251
L++ L+I+ L L+ + S Y V + L +L++ +
Sbjct: 121 FNRLLLLLLV--------LIILLLLVSLLGYLLLSQYFLLVLLLLL-YLLPYLVLNLLIL 171
Query: 252 WFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFS 291
+ L +L+I L L+++ + +REL+ + +
Sbjct: 172 QYFLLVLLIYRLLRLLNRQLKQLLRELRGLRESGQLRECC 211
>gnl|CDD|219856 pfam08477, Miro, Miro-like protein. Mitochondrial Rho proteins
(Miro-1, and Miro-2), are atypical Rho GTPases. They
have a unique domain organisation, with tandem
GTP-binding domains and two EF hand domains (pfam00036),
that may bind calcium. They are also larger than
classical small GTPases. It has been proposed that they
are involved in mitochondrial homeostasis and apoptosis.
Length = 116
Score = 33.9 bits (78), Expect = 0.070
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 466 NIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP 521
+ ++G G+GKSSLL L E ++I +A LE + D
Sbjct: 1 KVVVIGDKGSGKSSLLSQLVGG-EFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDF 55
Score = 31.6 bits (72), Expect = 0.35
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP 579
++G G+GKSSLL L E ++I +A LE + D
Sbjct: 3 VVIGDKGSGKSSLLSQLVGG-EFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDF 55
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 35.2 bits (81), Expect = 0.079
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 15/128 (11%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR-----LSVIPQD-P 579
G++G G+GKS+LL L + +G + D+A V+L L R ++++ QD
Sbjct: 31 GLLGPNGSGKSTLLRLLAGALRPDAGTV-----DLAGVDLHGLSRRARARRVALVEQDSD 85
Query: 580 VLFNGTIRYNLDPFGRCHDTELW--DALEKSHLKSKVVTMRSKLD-SDVQGDQLSLGEKQ 636
T+R ++ GR LW D+ + + + + +D LS GE+Q
Sbjct: 86 TAVPLTVR-DVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQ 144
Query: 637 LLCLARAL 644
+ +ARAL
Sbjct: 145 RVHVARAL 152
Score = 31.3 bits (71), Expect = 1.5
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Query: 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR 511
L++ V G G++G G+GKS+LL L + +G + D+A V+L L
Sbjct: 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTV-----DLAGVDLHGLS 69
Query: 512 SR-----LSVIPQD 520
R ++++ QD
Sbjct: 70 RRARARRVALVEQD 83
>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase. The full-length
GTPase protein is required for the complete activity of
the protein of interacting with the 50S ribosome and
binding of both adenine and guanine nucleotides, with a
preference for guanine nucleotide.
Length = 117
Score = 33.4 bits (77), Expect = 0.086
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 466 NIGIVGRTGAGKSSLLVALFR 486
+ +VGR GKS+L+ AL
Sbjct: 1 RVALVGRPNVGKSTLINALTG 21
Score = 31.5 bits (72), Expect = 0.49
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 526 GIVGRTGAGKSSLLVALFR 544
+VGR GKS+L+ AL
Sbjct: 3 ALVGRPNVGKSTLINALTG 21
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 35.7 bits (82), Expect = 0.095
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 502 IASVELETLRS--RLSVIPQDPVLFNGIVGRTGAGKSSLLVA-LFRLVELSSGQIK 554
+ +E+E +S + ++P P F IVG G+GKS++L A LF L E S+ ++
Sbjct: 2 LKRIEIEGFKSYAKTVILPFSP-GFTAIVGPNGSGKSNILDAILFVLGERSAKSLR 56
>gnl|CDD|218643 pfam05571, DUF766, Protein of unknown function (DUF766). This
family consists of several eukaryotic proteins of
unknown function.
Length = 296
Score = 34.8 bits (80), Expect = 0.13
Identities = 22/97 (22%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 85 LRSTDEVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWS 144
+ T E +++++F F + C V + P+L+ LY +S + +Y F + +
Sbjct: 137 VYCTQEAVYPLYTIVFVFYLFCLVLMFLLRPILVCKILY--VSGNMKPIYAALYFFPILT 194
Query: 145 MLFAFL--MICFVFPWFALPLLIITTLYHLISKVFRS 179
++ A L +I + FP+ +L + ++ +HL K+ +
Sbjct: 195 VIHAVLGGLIYYSFPYISLVISLVANAFHLSLKLDQP 231
Score = 30.1 bits (68), Expect = 3.7
Identities = 20/84 (23%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 189 MWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFL--MI 246
+++++F F + C V + P+L+ LY +S + +Y F + +++ A L +I
Sbjct: 147 LYTIVFVFYLFCLVLMFLLRPILVCKILY--VSGNMKPIYAALYFFPILTVIHAVLGGLI 204
Query: 247 CFVFPWFALPLLIITTLYHLISKV 270
+ FP+ +L + ++ +HL K+
Sbjct: 205 YYSFPYISLVISLVANAFHLSLKL 228
>gnl|CDD|131576 TIGR02524, dot_icm_DotB, Dot/Icm secretion system ATPase DotB.
Members of this protein family are the DotB component of
Dot/Icm secretion systems, as found in obligate
intracellular pathogens Legionella pneumophila and
Coxiella burnetii. While this system resembles type IV
secretion systems and has been called a form of type IV,
the liturature now seems to favor calling this the
Dot/Icm system. This family is most closely related to
TraJ proteins of plasmid transfer, rather than to
proteins of other type IV secretion systems.
Length = 358
Score = 34.6 bits (79), Expect = 0.14
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 15/109 (13%)
Query: 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFR-LVELSSGQIKIDDFD--IASV--ELETLR 569
++ PQ+ ++F I G TG+GKS+LL A+ R L E KI ++ I V E+ET+
Sbjct: 129 AIAPQEGIVF--ITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETIS 186
Query: 570 SRL--SVIPQDPVLFNGTIRYNL--DP----FGRCHDTELWDALEKSHL 610
+ + S IP+ F +R L P G D E A ++ L
Sbjct: 187 ASVCQSEIPRHLNNFAAGVRNALRRKPHAILVGEARDAETISAALEAAL 235
Score = 29.2 bits (65), Expect = 6.9
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 469 IVGRTGAGKSSLLVALFR-LVELSSGQIKI 497
I G TG+GKS+LL A+ R L E KI
Sbjct: 139 ITGATGSGKSTLLAAIIRELAEAPDSHRKI 168
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 34.1 bits (78), Expect = 0.14
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 8/45 (17%)
Query: 524 FNGIVGRTGAGKSSLL----VALF----RLVELSSGQIKIDDFDI 560
I G G+GK+++L AL+ RL + I D +I
Sbjct: 21 LTLIYGPNGSGKTTILDAIRWALYGKTSRLKKSKGRGIVKGDIEI 65
Score = 33.7 bits (77), Expect = 0.22
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 9/55 (16%)
Query: 456 NVSFRINHGENIGIVGRTGAGKSSLL----VALF----RLVELSSGQIKIDDFDI 502
++ + G + I G G+GK+++L AL+ RL + I D +I
Sbjct: 12 DLEIDFSKGLTL-IYGPNGSGKTTILDAIRWALYGKTSRLKKSKGRGIVKGDIEI 65
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 34.6 bits (80), Expect = 0.14
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA 503
L + NV+ + E + ++G GAGK+++ L + + G I + I
Sbjct: 19 LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIE 70
>gnl|CDD|220495 pfam09971, DUF2206, Predicted membrane protein (DUF2206). This
domain, found in various hypothetical archaeal proteins,
has no known function.
Length = 367
Score = 34.7 bits (80), Expect = 0.14
Identities = 42/234 (17%), Positives = 76/234 (32%), Gaps = 34/234 (14%)
Query: 46 WSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSTDEVFQNMWSMLFAFLMI 105
+L MI + + L I L IS +F + + ++ S+ + I
Sbjct: 3 KKILLILFMIGLIVSHYGTAYLTIFLL--AISPLFLVLIKLLYVKDNRDKLSLSLVLIFI 60
Query: 106 CFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQ--NMWSMLFAFLMICFVFP------ 157
W+A + +L+ + + + N + L+
Sbjct: 61 VVALSWYAY--VSGGSLFKSFVSIGYKILSSIFTESLNPTNSQGLELLTTSSSFLHLLAK 118
Query: 158 ---WFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFAL------ 208
F L++I LY L + R + + A L+ V P+FA
Sbjct: 119 LINLFIQGLIVIGLLYVLYKLIRRRSKKSLEYLAFSFLFLAILVASIVLPFFASVMNVTR 178
Query: 209 ----------PLLII--TTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVF 250
P II TL I KVF ++ + + + FL++ F+F
Sbjct: 179 LYHITLVFLAPFFIIGFITLIENIVKVFNRIH-TIPLKKSYKIFSIFLVVYFLF 231
Score = 30.4 bits (69), Expect = 2.8
Identities = 42/231 (18%), Positives = 75/231 (32%), Gaps = 34/231 (14%)
Query: 2 LFAFLMICFVFPWFALPLLIITTLY--HLISKVFRSVYLRSVIQNMWSMLFAFLMICFVF 59
L MI + + L I L L + + +Y++ + S+ + I
Sbjct: 6 LLILFMIGLIVSHYGTAYLTIFLLAISPLFLVLIKLLYVKDNRDKL-SLSLVLIFIVVAL 64
Query: 60 PWFALPLLIITTLYHLISKVFRSVYLRSTDEVFQNMWSMLFAFLMICFVFP--------- 110
W+A + +L+ + + S N + L+
Sbjct: 65 SWYAY--VSGGSLFKSFVSIGYKIL-SSIFTESLNPTNSQGLELLTTSSSFLHLLAKLIN 121
Query: 111 WFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFAL--------- 161
F L++I LY L + R + + A L+ V P+FA
Sbjct: 122 LFIQGLIVIGLLYVLYKLIRRRSKKSLEYLAFSFLFLAILVASIVLPFFASVMNVTRLYH 181
Query: 162 -------PLLII--TTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVF 203
P II TL I KVF ++ + + + FL++ F+F
Sbjct: 182 ITLVFLAPFFIIGFITLIENIVKVFNRIH-TIPLKKSYKIFSIFLVVYFLF 231
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 34.4 bits (79), Expect = 0.15
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
T +NVS R +L +S G+ G++G G+GKS+LL L R S G+I
Sbjct: 11 TFALRNVSFRVPGR--TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEI 68
Query: 496 KIDDFDIASVELETLRSRLSVIPQ 519
+D + S + +++ +PQ
Sbjct: 69 LLDAQPLESWSSKAFARKVAYLPQ 92
Score = 32.8 bits (75), Expect = 0.41
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQ 577
G++G G+GKS+LL L R S G+I +D + S + +++ +PQ
Sbjct: 41 GLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQ 92
>gnl|CDD|234395 TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster maturation GTPase
HydF. This model describes the family of the [Fe]
hydrogenase maturation protein HypF as characterized in
Chlamydomonas reinhardtii and found, in an operon with
radical SAM proteins HydE and HydG, in numerous
bacteria. It has GTPase activity, can bind an 4Fe-4S
cluster, and is essential for hydrogenase activity
[Protein fate, Protein modification and repair].
Length = 391
Score = 34.4 bits (80), Expect = 0.16
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 467 IGIVGRTGAGKSSLLVALFR 486
IGI GR AGKSSL+ AL
Sbjct: 9 IGIFGRRNAGKSSLINALTG 28
Score = 31.7 bits (73), Expect = 1.4
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 526 GIVGRTGAGKSSLLVALFR 544
GI GR AGKSSL+ AL
Sbjct: 10 GIFGRRNAGKSSLINALTG 28
>gnl|CDD|206646 cd00880, Era_like, E. coli Ras-like protein (Era)-like GTPase. The
Era (E. coli Ras-like protein)-like family includes
several distinct subfamilies (TrmE/ThdF, FeoB, YihA
(EngB), Era, and EngA/YfgK) that generally show sequence
conservation in the region between the Walker A and B
motifs (G1 and G3 box motifs), to the exclusion of other
GTPases. TrmE is ubiquitous in bacteria and is a
widespread mitochondrial protein in eukaryotes, but is
absent from archaea. The yeast member of TrmE family,
MSS1, is involved in mitochondrial translation;
bacterial members are often present in
translation-related operons. FeoB represents an unusual
adaptation of GTPases for high-affinity iron (II)
transport. YihA (EngB) family of GTPases is typified by
the E. coli YihA, which is an essential protein involved
in cell division control. Era is characterized by a
distinct derivative of the KH domain (the pseudo-KH
domain) which is located C-terminal to the GTPase
domain. EngA and its orthologs are composed of two
GTPase domains and, since the sequences of the two
domains are more similar to each other than to other
GTPases, it is likely that an ancient gene duplication,
rather than a fusion of evolutionarily distinct GTPases,
gave rise to this family.
Length = 161
Score = 33.4 bits (77), Expect = 0.17
Identities = 11/19 (57%), Positives = 11/19 (57%)
Query: 468 GIVGRTGAGKSSLLVALFR 486
I GR GKSSLL AL
Sbjct: 1 AIFGRPNVGKSSLLNALLG 19
Score = 33.4 bits (77), Expect = 0.17
Identities = 11/19 (57%), Positives = 11/19 (57%)
Query: 526 GIVGRTGAGKSSLLVALFR 544
I GR GKSSLL AL
Sbjct: 1 AIFGRPNVGKSSLLNALLG 19
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 34.2 bits (79), Expect = 0.18
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSL--LVALFRLVELSSGQIKIDDFDIASVELETL 510
+L ++ IN GE I+G G+GKS+L ++A ++ G I I +E E
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPE-E 80
Query: 511 RSRLSVIP--QDPVLFNGI 527
R+ L + Q P+ G+
Sbjct: 81 RAHLGIFLAFQYPIEIPGV 99
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 34.2 bits (78), Expect = 0.19
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 12/134 (8%)
Query: 527 IVGRTGAGKSSLLVALFRLVEL-----SSGQIKIDDFDIASVELET--LRSRLSVIPQDP 579
++G +G GKS+ L L R+ +L +G + + +I + + LR ++ ++ Q P
Sbjct: 36 LIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQP 95
Query: 580 VLFNGTIR----YNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEK 635
F +I Y L G D + D ++ LK + K LS G++
Sbjct: 96 NPFPFSIYENVIYGLRLAG-VKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQ 154
Query: 636 QLLCLARALLRKTK 649
Q +C+AR L K
Sbjct: 155 QRVCIARVLAVKPD 168
Score = 33.8 bits (77), Expect = 0.20
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVEL-----S 491
I +V L Y L ++ F N E ++G +G GKS+ L L R+ +L
Sbjct: 6 ITSSDVHLFYGKFEALKGIDLDF--NQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTI 63
Query: 492 SGQIKIDDFDIASVELET--LRSRLSVIPQDPVLF 524
+G + + +I + + LR ++ ++ Q P F
Sbjct: 64 TGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPF 98
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 34.5 bits (79), Expect = 0.20
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 430 DWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE 489
D P I F + S Y PL+ N++F I+ I +VG G GKS++L + ++
Sbjct: 502 DRPGPPIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ 560
Query: 490 LSSGQI 495
SSG +
Sbjct: 561 PSSGTV 566
Score = 31.0 bits (70), Expect = 2.9
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 441 NVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLL 481
++S+ RD ++ + S + G + G+VGR G GK++ L
Sbjct: 184 SISVGGRD----LIVDASVTLAFGRHYGLVGRNGTGKTTFL 220
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 33.6 bits (77), Expect = 0.21
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 454 LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKID 498
L V+ I GE I ++G +G GKS+LL + L + +SG + ++
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILE 45
>gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD. SbcCD
and other Mre11/Rad50 (MR) complexes are implicated in
the metabolism of DNA ends. They cleave ends sealed by
hairpin structures and are thought to play a role in
removing protein bound to DNA termini.
Length = 213
Score = 33.8 bits (78), Expect = 0.21
Identities = 17/77 (22%), Positives = 25/77 (32%), Gaps = 15/77 (19%)
Query: 446 YRDNWPLVLANVSFRINHGENI-GIVGRTGAGKSSLL----VALFRLVELSSGQIKIDDF 500
+R+ + F + I G TGAGKS++L AL+ Q +
Sbjct: 14 FREEQV-----IDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSV 68
Query: 501 -----DIASVELETLRS 512
D A V
Sbjct: 69 FAPGEDTAEVSFTFQLG 85
Score = 31.1 bits (71), Expect = 1.2
Identities = 15/54 (27%), Positives = 19/54 (35%), Gaps = 9/54 (16%)
Query: 526 GIVGRTGAGKSSLL----VALFRLVELSSGQIKIDDF-----DIASVELETLRS 570
I G TGAGKS++L AL+ Q + D A V
Sbjct: 32 LICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLG 85
>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only].
Length = 454
Score = 34.1 bits (79), Expect = 0.23
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 460 RINHGENIGIVGRTGAGKSSLLVAL 484
+ G + I+GR GKSSLL AL
Sbjct: 213 ILREGLKVVIIGRPNVGKSSLLNAL 237
Score = 31.8 bits (73), Expect = 1.2
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 17/63 (26%)
Query: 497 ID--DFDIASVELETLRSRLSVIPQD-----------PVLFNG----IVGRTGAGKSSLL 539
ID + DI + LE +R +L + + +L G I+GR GKSSLL
Sbjct: 175 IDFPEEDIEELVLEKIREKLEELIAELDELLATAKQGKILREGLKVVIIGRPNVGKSSLL 234
Query: 540 VAL 542
AL
Sbjct: 235 NAL 237
>gnl|CDD|224031 COG1106, COG1106, Predicted ATPases [General function prediction
only].
Length = 371
Score = 34.0 bits (78), Expect = 0.25
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSG 551
N I G GAGKS+LL AL+ L L S
Sbjct: 24 INIIYGANGAGKSNLLEALYFLKGLISP 51
Score = 31.7 bits (72), Expect = 1.4
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 469 IVGRTGAGKSSLLVALFRLVELSSG 493
I G GAGKS+LL AL+ L L S
Sbjct: 27 IYGANGAGKSNLLEALYFLKGLISP 51
>gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell
wall biogenesis [Cell envelope biogenesis, outer
membrane].
Length = 439
Score = 34.1 bits (78), Expect = 0.26
Identities = 28/161 (17%), Positives = 59/161 (36%), Gaps = 14/161 (8%)
Query: 120 TTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRS 179
L H F + L L++ +F +P L++ L L++ +
Sbjct: 287 VLLLHPYLPALFRPLSGYRFILLLFSLLLPLLLTLLFLLSIIPSLLLILLSGLLALLL-- 344
Query: 180 VYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSM 239
+L AFL+I + P AL L+ ++ + +K R + V+ + +
Sbjct: 345 ---------ANVILAAFLLILLIPPLLALFALLQLGVFLVTTKGLRLIAKLVVYLLVILI 395
Query: 240 LFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKR 280
+F L+I +P + L + + + + L+
Sbjct: 396 IFLPLVI---WPLILILNLTLLKTVSWRTLNLVVEWKTLRG 433
Score = 29.1 bits (65), Expect = 7.5
Identities = 26/156 (16%), Positives = 54/156 (34%), Gaps = 17/156 (10%)
Query: 23 TTLYHLISKVFRSVYLRSVIQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRS 82
L H + L L++ +F +P L++ L L++ +
Sbjct: 287 VLLLHPYLPALFRPLSGYRFILLLFSLLLPLLLTLLFLLSIIPSLLLILLSGLLALLL-- 344
Query: 83 VYLRSTDEVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNM 142
+L AFL+I + P AL L+ ++ + +K R + V+ +
Sbjct: 345 ------------ANVILAAFLLILLIPPLLALFALLQLGVFLVTTKGLRLIAKLVVYLLV 392
Query: 143 WSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFR 178
++F L+I +P + L + +
Sbjct: 393 ILIIFLPLVI---WPLILILNLTLLKTVSWRTLNLV 425
>gnl|CDD|178608 PLN03046, PLN03046, D-glycerate 3-kinase; Provisional.
Length = 460
Score = 34.1 bits (78), Expect = 0.26
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 467 IGIVGRTGAGKSSLLVAL---FRLVELSSGQIKIDDFDIASVELETLRSR 513
IG G GK++L+ AL FR+ S + IDDF + + LR R
Sbjct: 215 IGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLTAEGQAELRER 264
Score = 33.7 bits (77), Expect = 0.36
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 521 PVLFNGIVGRTGAGKSSLLVAL---FRLVELSSGQIKIDDFDIASVELETLRSR 571
P L G G GK++L+ AL FR+ S + IDDF + + LR R
Sbjct: 211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLTAEGQAELRER 264
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 33.5 bits (77), Expect = 0.27
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 451 PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRL----VELSSGQIKIDDFDIASVE 506
PLV VS + G + +VG +G+GKS A + V ++G++ +D +A
Sbjct: 17 PLV-HGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVA--- 72
Query: 507 LETLRSRL-SVIPQDP 521
LR R + I Q+P
Sbjct: 73 PCALRGRKIATIMQNP 88
>gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed.
Length = 449
Score = 33.9 bits (79), Expect = 0.29
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 460 RINHGENIGIVGRTGAGKSSLLVAL 484
+ G + I GR GKSSLL AL
Sbjct: 211 ILREGLKVVIAGRPNVGKSSLLNAL 235
Score = 31.6 bits (73), Expect = 1.6
Identities = 11/16 (68%), Positives = 11/16 (68%)
Query: 527 IVGRTGAGKSSLLVAL 542
I GR GKSSLL AL
Sbjct: 220 IAGRPNVGKSSLLNAL 235
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 33.1 bits (76), Expect = 0.30
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELET 509
VL +++ IN GE + + G +G+GK++LL + L + G +K+ ++ EL
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 510 LRSRLSVIPQ 519
LR + I Q
Sbjct: 80 LRRNIGYIFQ 89
Score = 29.2 bits (66), Expect = 6.0
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 10/136 (7%)
Query: 514 LSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELETLRS 570
L + P + V+ + G +G+GK++LL + L + G +K+ ++ EL LR
Sbjct: 26 LEINPGEIVI---LTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRR 82
Query: 571 RLSVIPQDPVLFNG-TIRYNLDPFGRCHDTELW-DALEKSHLKSKVVTMRSKLDSDVQGD 628
+ I Q L T R N+ + +A E++ + V + LD
Sbjct: 83 NIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDY--YPH 140
Query: 629 QLSLGEKQLLCLARAL 644
LS G+KQ + +ARAL
Sbjct: 141 NLSGGQKQRVAIARAL 156
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 33.1 bits (76), Expect = 0.35
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKID 498
L +++ + GE + ++G +G GK++LL + V G I +D
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLD 61
>gnl|CDD|222058 pfam13345, DUF4098, Domain of unknown function (DUF4098). This
domain is a C-terminal repeat found in many bacterial
species.
Length = 76
Score = 30.7 bits (70), Expect = 0.41
Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 20/80 (25%)
Query: 488 VELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVE 547
VE SSG I + +++++T +++ G+ V
Sbjct: 9 VETSSGDISLSGITGENLDVKTGSGDITL-------------ENVTGEDV-------SVS 48
Query: 548 LSSGQIKIDDFDIASVELET 567
SG I + + SV +T
Sbjct: 49 TGSGDITLTGTEAGSVSAKT 68
>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase. TrmE (MnmE,
ThdF, MSS1) is a 3-domain protein found in bacteria and
eukaryotes. It controls modification of the uridine at
the wobble position (U34) of tRNAs that read codons
ending with A or G in the mixed codon family boxes. TrmE
contains a GTPase domain that forms a canonical Ras-like
fold. It functions a molecular switch GTPase, and
apparently uses a conformational change associated with
GTP hydrolysis to promote the tRNA modification
reaction, in which the conserved cysteine in the
C-terminal domain is thought to function as a catalytic
residue. In bacteria that are able to survive in
extremely low pH conditions, TrmE regulates
glutamate-dependent acid resistance.
Length = 159
Score = 32.1 bits (74), Expect = 0.44
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 469 IVGRTGAGKSSLLVALFR 486
I G+ GKSSLL AL
Sbjct: 8 IAGKPNVGKSSLLNALAG 25
Score = 32.1 bits (74), Expect = 0.44
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 527 IVGRTGAGKSSLLVALFR 544
I G+ GKSSLL AL
Sbjct: 8 IAGKPNVGKSSLLNALAG 25
>gnl|CDD|224337 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and
secretion].
Length = 407
Score = 33.1 bits (76), Expect = 0.48
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 14/104 (13%)
Query: 475 AGKSSLLVALFRLVELSSGQIKIDDFDIASVEL-----ETLRSRLSVIPQDPVLFNG--- 526
+S + L + + +++I D S E E LR L + ++ ++
Sbjct: 147 EIQSPTRLNLINELLRAGLELEILDMKDESYEDLRYFSEKLRKLLLSLIENLIVEQKRVI 206
Query: 527 -IVGRTGAGKSSLLVAL-FRLVELSS----GQIKIDDFDIASVE 564
+VG TG GK++ L L R V L I D + I +VE
Sbjct: 207 ALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVE 250
Score = 29.6 bits (67), Expect = 6.4
Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 18/103 (17%)
Query: 422 GQVKVKLADWPRQGTIKFKNVSLRYRDN-----------WPLVLANV--SFRINHGENIG 468
Q +L + L +D +L ++ + + I
Sbjct: 148 IQSPTRLNLINELLRAGLELEILDMKDESYEDLRYFSEKLRKLLLSLIENLIVEQKRVIA 207
Query: 469 IVGRTGAGKSSLLVAL-FRLVELSS----GQIKIDDFDIASVE 506
+VG TG GK++ L L R V L I D + I +VE
Sbjct: 208 LVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVE 250
>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 32.9 bits (75), Expect = 0.50
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 10/94 (10%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+ + + W + VS +N GE G+VG +G+GKS + A+ + + + ++
Sbjct: 6 IRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNK-DNWRVT 64
Query: 497 IDDFDIASVELETLRSR---------LSVIPQDP 521
D ++L L R +S+I Q+P
Sbjct: 65 ADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP 98
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 33.4 bits (76), Expect = 0.52
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 456 NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515
N++F N + +G GAGK++ L L L+ +SG + + DI + L+ +R L
Sbjct: 950 NITFYEN--QITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLG 1006
Query: 516 VIPQDPVLFN 525
+ PQ +LF+
Sbjct: 1007 MCPQHNILFH 1016
Score = 33.1 bits (75), Expect = 0.65
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 528 VGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 583
+G GAGK++ L L L+ +SG + + DI + L+ +R L + PQ +LF+
Sbjct: 962 LGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLGMCPQHNILFH 1016
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 32.8 bits (74), Expect = 0.53
Identities = 40/143 (27%), Positives = 59/143 (41%), Gaps = 41/143 (28%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDD--------FDIASVELETLRSRLSVIPQD 578
++G TG+GK++ L L R+ + SG D F+ V LE R R+ ++ Q
Sbjct: 52 LMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDV-LE-FRRRVGMLFQR 109
Query: 579 PVLFNGTIRYNLDPFGRCH-----------------DTELWDALEKSHLKSKVVTMRSKL 621
P F +I N+ R H + LWDA++ S
Sbjct: 110 PNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPF------- 162
Query: 622 DSDVQGDQLSLGEKQLLCLARAL 644
+LS G++QLLCLAR L
Sbjct: 163 -------RLSGGQQQLLCLARTL 178
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 33.1 bits (76), Expect = 0.56
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 21/56 (37%)
Query: 438 KFKNVSLR----YRDNWPLVLANVSFR----INHGENIGIVGRTGAGKSSLLVALF 485
+F V L Y D A++ + HG N G+GKSSLL A F
Sbjct: 2 RFDRVRLENFKCYAD------ADLRLEDGVTVIHGVN-------GSGKSSLLEACF 44
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 32.4 bits (74), Expect = 0.57
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKI 497
+L V + GE I ++G +G+GKS+LL L L + SSG++ +
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSL 69
>gnl|CDD|225892 COG3356, COG3356, Predicted membrane protein [Function unknown].
Length = 578
Score = 32.8 bits (75), Expect = 0.70
Identities = 37/222 (16%), Positives = 69/222 (31%), Gaps = 43/222 (19%)
Query: 60 PWFALPLLIITTLYHLISKVFRSVYLRSTDEVFQNMWSMLFAFLMICFVFPWFALPLLII 119
P + I L+ + + + + V ++ LFA L+ +
Sbjct: 18 PKSVASIYFIAFLFGVAALLHYILGG-ILPAVLLLGFTYLFAILLDLIL----------- 65
Query: 120 TTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRS 179
+ RS F + F L+I F L LL I + +
Sbjct: 66 -----VKILGINFKLKRSSF-----LAFVSLVIWSTFLVLLLVLLAIRPVDVSLILAVAL 115
Query: 180 VYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSM 239
V + F FL I V ++P ++ ++ ++ S + F +S+
Sbjct: 116 V-----------LSFRFL-IVLVSYKNSVPSSVLPSMNYVYS---PLIVYLKGFVAQYSL 160
Query: 240 LFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRM 281
+ F+ L LL+ + LY + F V
Sbjct: 161 IVPFI------ISSLLILLLASLLYGRVLYSFVKVVNRPGVR 196
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 32.0 bits (72), Expect = 0.75
Identities = 17/66 (25%), Positives = 27/66 (40%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 583
N I+G G+GKS+LL AL L+ L S + +D ++L + I
Sbjct: 1 LNVIIGPNGSGKSNLLKALALLLLLLSLGLTLDRGLNVGIKLLPFLLDENEIEIPLEFEI 60
Query: 584 GTIRYN 589
+
Sbjct: 61 EEFLID 66
Score = 30.1 bits (67), Expect = 3.1
Identities = 34/204 (16%), Positives = 57/204 (27%), Gaps = 25/204 (12%)
Query: 468 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGI 527
I+G G+GKS+LL AL L+ L S + +D ++L + I
Sbjct: 3 VIIGPNGSGKSNLLKALALLLLLLSLGLTLDRGLNVGIKLLPFLLDENEIEIPLEFEIEE 62
Query: 528 VGRTG--------------------AGKSSLLVALFRLVELSSGQIKIDDFDIASVELET 567
G + + R S + + E
Sbjct: 63 FLIDGIRYRYGFELDKEDILEELLYEYRKGEELLFERERSKESFEKSPEKKRELRGLREV 122
Query: 568 LRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDS---- 623
L + +L + I ++ L + +V
Sbjct: 123 LLLLNLSLSSFLLLASLEILLSILLPFSFILGNLRNLRNIELKLLDLVKRLFLESDLLRL 182
Query: 624 -DVQGDQLSLGEKQLLCLARALLR 646
+ +S G K+LL L ALL
Sbjct: 183 LKLLIKGISDGTKRLLALLLALLS 206
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 31.8 bits (72), Expect = 0.76
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 441 NVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
+ Y D +L +SF + G + + G GAGK++LL + L+ G+I
Sbjct: 6 ELDFDYHDQ--PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEI 58
>gnl|CDD|224116 COG1195, RecF, Recombinational DNA repair ATPase (RecF pathway)
[DNA replication, recombination, and repair].
Length = 363
Score = 32.2 bits (74), Expect = 0.77
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
Query: 437 IKFKNVSLR-YRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRL 487
+ ++ LR +R N+ A + ++ G N+ +VG G GK++LL A++ L
Sbjct: 1 MYLLSLLLRNFR-NY----AELDLDLSPGVNV-LVGENGQGKTNLLEAIYLL 46
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 32.8 bits (75), Expect = 0.77
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 15/57 (26%)
Query: 524 FNGIVGRTGAGKSSLLVAL-FRLVELSSGQI---KIDDF-----------DIASVEL 565
F IVG G+GKS+++ A+ F L E S+ + K+ D + A VEL
Sbjct: 26 FTAIVGPNGSGKSNIVDAIRFVLGEQSAKNLRASKMSDLIFAGSGNRKPANYAEVEL 82
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 32.0 bits (73), Expect = 0.77
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 452 LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELE 508
+ N+S + G+ I+G +G GK++LL + + G+I D +I ++ L
Sbjct: 21 CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLY 80
Query: 509 TLRSRLSVIPQDPVLF 524
T+R R+S++ Q LF
Sbjct: 81 TVRKRMSMLFQSGALF 96
>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General
function prediction only].
Length = 219
Score = 31.9 bits (72), Expect = 0.78
Identities = 34/208 (16%), Positives = 59/208 (28%), Gaps = 40/208 (19%)
Query: 467 IGIVGRTGAGKSSLLVALF------------------RLVELSSGQIKIDDFDIASVELE 508
I ++G G GK++LL L + +E IK+ +D A E
Sbjct: 8 IVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTA--GQE 65
Query: 509 TLRSRLSVIPQDPVLFNGIVG--------RTGAGKSSLLVALFRL------VELSSGQIK 554
RS + NGI+ + L L L + L +I
Sbjct: 66 EYRSLRPEYYRGA---NGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKID 122
Query: 555 IDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPF---GRCHDTELWDALEKSHLK 611
+ D +S E+ +R V+ N + + L K L+
Sbjct: 123 LFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLR 182
Query: 612 SKVVTMRSKLDSDVQGDQLSLGEKQLLC 639
+ + + + L
Sbjct: 183 KLLEEIEKLVLKNELRQLDRLNNPIEQA 210
>gnl|CDD|131577 TIGR02525, plasmid_TraJ, plasmid transfer ATPase TraJ. Members of
this protein family are predicted ATPases associated
with plasmid transfer loci in bacteria. This family is
most similar to the DotB ATPase of a type-IV
secretion-like system of obligate intracellular
pathogens Legionella pneumophila and Coxiella burnetii
(TIGR02524) [Mobile and extrachromosomal element
functions, Plasmid functions].
Length = 372
Score = 32.5 bits (74), Expect = 0.79
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 15/51 (29%)
Query: 509 TLRSRLSVIPQ------DPVLFNG---------IVGRTGAGKSSLLVALFR 544
TLR S IP +P LFN I G TG+GKS+L ++++
Sbjct: 121 TLRVIPSDIPDLKQMGIEPDLFNSLLPAAGLGLICGETGSGKSTLAASIYQ 171
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 31.4 bits (71), Expect = 0.87
Identities = 30/120 (25%), Positives = 47/120 (39%), Gaps = 15/120 (12%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+ + RY + LV V + GE IGIVG G GK++ V++ +GQ+
Sbjct: 1 QLYPDCVKRYGVFFLLVELGV---VKEGEVIGIVGPNGTGKTT-------AVKILAGQLI 50
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKID 556
+ + E PQ L G + R + L A F L + S + I+
Sbjct: 51 PNGDND-----EWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIE 105
>gnl|CDD|213206 cd03239, ABC_SMC_head, The SMC head domain belongs to the
ATP-binding cassette superfamily. The structural
maintenance of chromosomes (SMC) proteins are essential
for successful chromosome transmission during
replication and segregation of the genome in all
organisms. SMCs are generally present as single proteins
in bacteria, and as at least six distinct proteins in
eukaryotes. The proteins range in size from
approximately 110 to 170 kDa, and each has five distinct
domains: amino- and carboxy-terminal globular domains,
which contain sequences characteristic of ATPases, two
coiled-coil regions separating the terminal domains ,
and a central flexible hinge. SMC proteins function
together with other proteins in a range of chromosomal
transactions, including chromosome condensation,
sister-chromatid cohesion, recombination, DNA repair,
and epigenetic silencing of gene expression.
Length = 178
Score = 31.1 bits (71), Expect = 1.0
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 14/92 (15%)
Query: 502 IASVELETLRS-RLSVIPQDPVLFNGIVGRTGAGKSSLLVAL-----FRLVELSSGQIKI 555
I + L+ +S R + FN IVG G+GKS+++ A+ + +L G +
Sbjct: 1 IKQITLKNFKSYRDETVVGGSNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLF 60
Query: 556 D-------DFDIASVELETLRSRLSVIPQDPV 580
+ ASVE+ T ++ Q V
Sbjct: 61 LAGGGVKAGINSASVEI-TFDKSYFLVLQGKV 91
>gnl|CDD|206733 cd04170, EF-G_bact, Elongation factor G (EF-G) family.
Translocation is mediated by EF-G (also called
translocase). The structure of EF-G closely resembles
that of the complex between EF-Tu and tRNA. This is an
example of molecular mimicry; a protein domain evolved
so that it mimics the shape of a tRNA molecule. EF-G in
the GTP form binds to the ribosome, primarily through
the interaction of its EF-Tu-like domain with the 50S
subunit. The binding of EF-G to the ribosome in this
manner stimulates the GTPase activity of EF-G. On GTP
hydrolysis, EF-G undergoes a conformational change that
forces its arm deeper into the A site on the 30S
subunit. To accommodate this domain, the peptidyl-tRNA
in the A site moves to the P site, carrying the mRNA and
the deacylated tRNA with it. The ribosome may be
prepared for these rearrangements by the initial binding
of EF-G as well. The dissociation of EF-G leaves the
ribosome ready to accept the next aminoacyl-tRNA into
the A site. This group contains only bacterial members.
Length = 268
Score = 31.8 bits (73), Expect = 1.0
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 466 NIGIVGRTGAGKSSLLVAL 484
NI +VG +G+GK++L AL
Sbjct: 1 NIALVGHSGSGKTTLAEAL 19
>gnl|CDD|224397 COG1480, COG1480, Predicted membrane-associated HD superfamily
hydrolase [General function prediction only].
Length = 700
Score = 32.4 bits (74), Expect = 1.1
Identities = 34/204 (16%), Positives = 62/204 (30%), Gaps = 38/204 (18%)
Query: 72 LYHLIS-KVFRSVYLRSTDEVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVF 130
L L+S V L + ++F L+ PL + +L L
Sbjct: 264 LLGLLSLSVNILPLLGL-------LILVIFLILLFALYERRTKSPLKLRNSLLLLYL--- 313
Query: 131 RSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMW 190
S+ + ++ F + + P P+L+I ++ I+
Sbjct: 314 -SLAILTLSLLRIVGYFNYSASGLLVPPALGPMLLILLVFLRIA---------------- 356
Query: 191 SMLFAFLMICF-VFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFV 249
+F+ MI + F L L+S F ++ L +L + L + +
Sbjct: 357 --IFSSSMIAIALLYLFGGSYNSEIALIALLS-SFSALVLLRKMSRRSDILKSGLFLALM 413
Query: 250 ------FPWFALPLLIITTLYHLI 267
FA L L I
Sbjct: 414 NMLLLLSLIFAFTLSWYDALQDAI 437
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 31.8 bits (73), Expect = 1.1
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 15/83 (18%)
Query: 454 LANVSFRINHGENIGIVGRTGAGKSSLLV-ALFRLVE--LSSGQIKIDDFDIASVELETL 510
L N+ I G + G +G+GKSSL+ L+ + L + + + D +E L
Sbjct: 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHD----RIEGL 66
Query: 511 R--SRLSVIPQDPVLFNGIVGRT 531
++ VI Q P +GRT
Sbjct: 67 EHIDKVIVIDQSP------IGRT 83
>gnl|CDD|232980 TIGR00450, mnmE_trmE_thdF, tRNA modification GTPase TrmE. TrmE,
also called MnmE and previously designated ThdF
(thiophene and furan oxidation protein), is a GTPase
involved in tRNA modification to create
5-methylaminomethyl-2-thiouridine in the wobble position
of some tRNAs. This protein and GidA form an
alpha2/beta2 heterotetramer [Protein synthesis, tRNA and
rRNA base modification].
Length = 442
Score = 32.1 bits (73), Expect = 1.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 460 RINHGENIGIVGRTGAGKSSLLVALFR 486
+++ G + IVG GKSSLL AL +
Sbjct: 199 KLDDGFKLAIVGSPNVGKSSLLNALLK 225
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 31.6 bits (72), Expect = 1.1
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 461 INHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA 503
I+ E IGI+G G GK++ + L +++ G I+I+ ++
Sbjct: 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVS 64
>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl
glycosylphosphotransferase. Members of this family are
generally found near other genes involved in the
biosynthesis of a variety of exopolysaccharides. These
proteins consist of two fused domains, an N-terminal
hydrophobic domain of generally low conservation and a
highly conserved C-terminal sugar transferase domain
(pfam02397). Characterized and partially characterized
members of this subfamily include Salmonella WbaP
(originally RfbP) , E. coli WcaJ , Methylobacillus EpsB,
Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B
Streptococcus CpsE (originally CpsD), and Streptococcus
suis Cps2E. Each of these is believed to act in
transferring the sugar from, for instance, UDP-glucose
or UDP-galactose, to a lipid carrier such as
undecaprenyl phosphate as the first (priming) step in
the synthesis of an oligosaccharide "block". This
function is encoded in the C-terminal domain. The
liposaccharide is believed to be subsequently
transferred through a "flippase" function from the
cytoplasmic to the periplasmic face of the inner
membrane by the N-terminal domain. Certain closely
related transferase enzymes such as Sinorhizobium ExoY
and Lactococcus EpsD lack the N-terminal domain and are
not found by this model.
Length = 445
Score = 31.8 bits (73), Expect = 1.2
Identities = 14/86 (16%), Positives = 30/86 (34%), Gaps = 8/86 (9%)
Query: 82 SVYLRSTDEVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQN 141
+ + +S+L +++ F+ + A L Y L V
Sbjct: 15 FLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGL------YRSWRGRSLLEELARVLLA 68
Query: 142 MWSMLFAFLM-ICFVFPWFALPLLII 166
W ++F L+ + F+ F L++
Sbjct: 69 -WLLVFLLLLALAFLLKGFDFSRLVL 93
Score = 29.9 bits (68), Expect = 4.6
Identities = 21/106 (19%), Positives = 35/106 (33%), Gaps = 17/106 (16%)
Query: 109 FPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITT 168
AL LL+ L S Y S+L +++ F+ + A L
Sbjct: 4 LLALALSLLLAFLLRGGGLLPPPSFY---------SLLLLLILLLFLILFAASGL----- 49
Query: 169 LYHLISKVFRSVYLRSVFQNMWSMLFAFLM-ICFVFPWFALPLLII 213
Y L V W ++F L+ + F+ F L++
Sbjct: 50 -YRSWRGRSLLEELARVLLA-WLLVFLLLLALAFLLKGFDFSRLVL 93
Score = 29.9 bits (68), Expect = 4.6
Identities = 21/106 (19%), Positives = 35/106 (33%), Gaps = 17/106 (16%)
Query: 156 FPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITT 215
AL LL+ L S Y S+L +++ F+ + A L
Sbjct: 4 LLALALSLLLAFLLRGGGLLPPPSFY---------SLLLLLILLLFLILFAASGL----- 49
Query: 216 LYHLISKVFRSVYLRSVFQNMWSMLFAFLM-ICFVFPWFALPLLII 260
Y L V W ++F L+ + F+ F L++
Sbjct: 50 -YRSWRGRSLLEELARVLLA-WLLVFLLLLALAFLLKGFDFSRLVL 93
>gnl|CDD|226123 COG3595, COG3595, Uncharacterized conserved protein [Function
unknown].
Length = 318
Score = 31.7 bits (72), Expect = 1.2
Identities = 25/112 (22%), Positives = 39/112 (34%), Gaps = 32/112 (28%)
Query: 488 VELSSGQIKIDDFDIA---------SVELETLRSRLSV---------IPQ---DPV---L 523
+E SG I+I+D I + L L SV P + +
Sbjct: 129 IESVSGVIRIEDTKINDLFVKTTSGDISLNNLEIEKSVTIKTGSGDINPVRIYESLSVKT 188
Query: 524 FNGIVG--------RTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELET 567
NG V +G S + A +E +G IK+ + +V+L T
Sbjct: 189 ENGEVKSGDLTIKTISGDVSVSGVNAKKLKIETVNGSIKLTNSSNENVDLTT 240
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 32.2 bits (73), Expect = 1.2
Identities = 27/105 (25%), Positives = 54/105 (51%), Gaps = 10/105 (9%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS--GQIKIDDFDIASVELETL 510
+L V+ + GE + ++G +G+GKS+LL AL ++ ++ G I ++ + L
Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK---QIL 139
Query: 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKI 555
+ R + QD +L+ + R ++ + +L RL + + Q KI
Sbjct: 140 K-RTGFVTQDDILYPHLTVR----ETLVFCSLLRLPKSLTKQEKI 179
>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of
small guanosine triphosphatases (GTPases). Ras-like
GTPase superfamily. The Ras-like superfamily of small
GTPases consists of several families with an extremely
high degree of structural and functional similarity. The
Ras superfamily is divided into at least four families
in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families.
This superfamily also includes proteins like the GTP
translation factors, Era-like GTPases, and G-alpha chain
of the heterotrimeric G proteins. Members of the Ras
superfamily regulate a wide variety of cellular
functions: the Ras family regulates gene expression, the
Rho family regulates cytoskeletal reorganization and
gene expression, the Rab and Sar1/Arf families regulate
vesicle trafficking, and the Ran family regulates
nucleocytoplasmic transport and microtubule
organization. The GTP translation factor family
regulates initiation, elongation, termination, and
release in translation, and the Era-like GTPase family
regulates cell division, sporulation, and DNA
replication. Members of the Ras superfamily are
identified by the GTP binding site, which is made up of
five characteristic sequence motifs, and the switch I
and switch II regions.
Length = 161
Score = 30.9 bits (70), Expect = 1.3
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 468 GIVGRTGAGKSSLLVALF 485
+VGR G GKSSLL AL
Sbjct: 1 VVVGRGGVGKSSLLNALL 18
Score = 30.9 bits (70), Expect = 1.3
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 526 GIVGRTGAGKSSLLVALF 543
+VGR G GKSSLL AL
Sbjct: 1 VVVGRGGVGKSSLLNALL 18
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 31.2 bits (71), Expect = 1.4
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 454 LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 499
L ++SF ++ GE ++G GAGK++L+ + G++ D
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDG 66
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 31.5 bits (71), Expect = 1.4
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 444 LRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI--KIDDFD 501
RY+D VL ++ + G+VG G GKS+L + L L+ G + + D
Sbjct: 9 FRYQDE--PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLD 66
Query: 502 IASVELETLRSRLSVIPQDP 521
+ L LR +++ + QDP
Sbjct: 67 YSKRGLLALRQQVATVFQDP 86
Score = 30.0 bits (67), Expect = 3.8
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQI--KIDDFDIASVELETLRSRLSVIPQDP 579
G+VG G GKS+L + L L+ G + + D + L LR +++ + QDP
Sbjct: 31 GLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDP 86
>gnl|CDD|215728 pfam00115, COX1, Cytochrome C and Quinol oxidase polypeptide I.
Length = 441
Score = 31.4 bits (72), Expect = 1.5
Identities = 41/188 (21%), Positives = 73/188 (38%), Gaps = 34/188 (18%)
Query: 21 IITTLYHLISKVFRSVYLRSVIQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVF 80
I T+ + + L + +WS+L ++I F FP A+ LL++ + + F
Sbjct: 148 FIVTILKRRAP---GMTLSRMPLFVWSLLATAILILFAFPVLAVALLMLLLDRNFGTSFF 204
Query: 81 RSVYLRSTDEVFQNMWSMLFAFLMICFVFPWF-ALPLLIITTLYHLISKVFRSVYLRSVF 139
+ ++ LF F F P L L + +++ K + +F
Sbjct: 205 DPL-----------LYQHLFWF----FGHPEVYILILPAFGIVSYILPKFSG----KPLF 245
Query: 140 QNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMI 199
W M+ AF I L + +H+ + V+ R+ F +++SML A
Sbjct: 246 GYKW-MVLAFWAIAL--------LSFLVWGHHMFTSGL-PVWWRAFF-SVFSMLIAIPTG 294
Query: 200 CFVFPWFA 207
VF W A
Sbjct: 295 LKVFNWLA 302
>gnl|CDD|223703 COG0630, VirB11, Type IV secretory pathway, VirB11 components, and
related ATPases involved in archaeal flagella
biosynthesis [Cell motility and secretion /
Intracellular trafficking and secretion].
Length = 312
Score = 31.2 bits (71), Expect = 1.6
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 451 PLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE 506
P A + I ++I I G T +GK++LL AL + + I ++E
Sbjct: 130 PEQAAYLWLAIEARKSIIICGGTASGKTTLLNALLDFI--------PPEERIVTIE 177
>gnl|CDD|112322 pfam03498, CDtoxinA, Cytolethal distending toxin A/C family.
Length = 149
Score = 30.5 bits (69), Expect = 1.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 418 TSEFGQVKVKLADWPRQGTIKFKNVS 443
++EFG ++ K+ D GT++FKN
Sbjct: 35 SNEFGLLRDKIMDGKNGGTVQFKNPD 60
>gnl|CDD|220533 pfam10034, Dpy19, Q-cell neuroblast polarisation. Dyp-19, formerly
known as DUF2211, is a transmembrane domain family that
is required to orient the neuroblast cells, QR and QL
accurately on the anterior-posterior axis: QL and QR are
born in the same anterior-posterior position, but
polarise and migrate left-right asymmetrically, QL
migrating towards the posterior and QR migrating towards
the anterior. It is also required, with unc-40, to
express mab-5 correctly in the Q cell descendants. The
Dpy-19 protein derives from the C. elegans DUMPY mutant.
Length = 637
Score = 31.5 bits (72), Expect = 1.7
Identities = 51/249 (20%), Positives = 92/249 (36%), Gaps = 44/249 (17%)
Query: 10 FVFPWFALPLLIITTLYHLISKVFRSVYLRSVIQNMWSMLFAFLM-ICFVFPW----FAL 64
F +P+ L +L++T LR ML F + F+ PW F L
Sbjct: 164 FAYPFLVLQMLLLT------------YILRRRKNQRACMLLLFASSVFFMLPWQFSQFVL 211
Query: 65 PLLIIT-----TLYHLISKVFRSVYLRSTDEVFQNMWSMLFAFLMICFVFPWFALPLLII 119
I++ +L L S R + L + + M +++ + + +L+I
Sbjct: 212 LTQILSLFALYSLGFLPSDKVRKILLIHMISLLLSFVLMFGNSMLLLSLLLSSLVAILLI 271
Query: 120 TTLY-HLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYH----LIS 174
L ++ + L+ V Q S+ F L + AL LL+ L I
Sbjct: 272 IALRKNVPCGLLLPRLLKWVLQ---SLKFLVLTL-------ALKLLLKKILGEKDDAHIF 321
Query: 175 KVFRSVYLRSVFQNMWSMLFAFLMIC---FVFPWFALPLLIITTLYHLISKVFRSVYLRS 231
+ +S + +++ ++L+ C F F L + TL I + + L S
Sbjct: 322 DLLKSKFGLQSYRDFDTLLYT----CAPEFDFLTKETFLRLTKTLLLPIYILVLVIILIS 377
Query: 232 VFQNMWSML 240
Q++W L
Sbjct: 378 ALQDVWRNL 386
>gnl|CDD|232857 TIGR00176, mobB, molybdopterin-guanine dinucleotide biosynthesis
protein MobB. This molybdenum cofactor biosynthesis
enzyme is similar to the urease accessory protein UreG
and to the hydrogenase accessory protein HypB, both GTP
hydrolases involved in loading nickel into the
metallocenters of their respective target enzymes
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Molybdopterin].
Length = 155
Score = 30.4 bits (69), Expect = 1.8
Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 21/107 (19%)
Query: 467 IGIVGRTGAGKSSLLVALFRLVE---LSSGQIKID--DFDIASVELETLRSRLS----VI 517
+ IVG +GK++L+ L + ++ IK D DFDI ++ R R + VI
Sbjct: 2 LQIVGPKNSGKTTLIERLVKALKARGYRVATIKHDHHDFDIDKNGKDSYRHREAGADQVI 61
Query: 518 PQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE 564
+ + T + L L RL D DI VE
Sbjct: 62 VASSRRY-AFMHETQE-ERDLEALLDRL----------PDLDIILVE 96
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The conserved
ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence.
Length = 204
Score = 30.7 bits (70), Expect = 2.0
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 10/50 (20%)
Query: 469 IVGRTGAGKSSLL----VALFRLVELSSGQIKIDDFDI------ASVELE 508
IVG+ GAGK++++ AL + +S D I A V+L
Sbjct: 27 IVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLA 76
Score = 30.7 bits (70), Expect = 2.1
Identities = 33/131 (25%), Positives = 46/131 (35%), Gaps = 40/131 (30%)
Query: 527 IVGRTGAGKSSLL----VALFRLVELSSGQIKIDDFDI------ASVEL--ETLRSRLSV 574
IVG+ GAGK++++ AL + +S D I A V+L E +
Sbjct: 27 IVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYT 86
Query: 575 IPQDPVLFNGTIRYNLDPFGRCHDTEL-WDALEKSHLKSKVVTMRSKLDSDVQGDQLSLG 633
I + + I F CH E W L+ MR + S G
Sbjct: 87 ITRSLAILENVI------F--CHQGESNWPLLD----------MR---------GRCSGG 119
Query: 634 EKQLLCLARAL 644
EK L L L
Sbjct: 120 EKVLASLIIRL 130
>gnl|CDD|129208 TIGR00101, ureG, urease accessory protein UreG. This model
represents UreG, a GTP hydrolase that acts in the
assembly of the nickel metallocenter of urease. It is
found only in urease-positive species, although some
urease-positive species (e.g. Bacillus subtilis) lack
this protein. A similar protein, hypB, is an accessory
protein for expression of hydrogenase, which also uses
nickel [Central intermediary metabolism, Nitrogen
metabolism].
Length = 199
Score = 30.2 bits (68), Expect = 2.2
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 467 IGIVGRTGAGKSSLLVALFRLVELSSG-QIKIDDFDIASVELETLRSRLSVIPQDPVL 523
IG+ G G+GK++L+ AL R L Q+ + DI + E + S +P + +L
Sbjct: 4 IGVAGPVGSGKTALIEALTR--ALRQKYQLAVITNDIYTQEDAEFLVKNSALPPERIL 59
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 30.8 bits (69), Expect = 2.3
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493
Q I+ + ++ + + L V I+HGE + ++G +G+GKS+LL L SG
Sbjct: 2 QTIIRVEKLAKTFNQH--QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHL-------SG 52
Query: 494 QIKIDDFDIASVEL 507
I D + +EL
Sbjct: 53 LITGDKSAGSHIEL 66
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 30.6 bits (69), Expect = 2.3
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 454 LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
L ++S + G+ IG+VG G+GKS+L + + + G++
Sbjct: 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD 82
>gnl|CDD|221983 pfam13207, AAA_17, AAA domain.
Length = 114
Score = 29.2 bits (65), Expect = 2.5
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 12/92 (13%)
Query: 467 IGIVGRTGAGKSSLLVAL-----FRLVELSSGQIKI-------DDFDIASVELETLRSRL 514
I I G G+GKS+L L ++ L + + D ++LE L L
Sbjct: 2 ILITGPPGSGKSTLAKKLAEKLGIPVISLDDLLREEGLAELDDGELDDIDIDLELLEEIL 61
Query: 515 SVIPQDPVLFNGIVGRTGAGKSSLLVALFRLV 546
+ + + +G+ T + + L
Sbjct: 62 DELAKQEWVIDGVRESTLELRLEEADLVVFLD 93
>gnl|CDD|236442 PRK09270, PRK09270, nucleoside triphosphate hydrolase
domain-containing protein; Reviewed.
Length = 229
Score = 30.3 bits (69), Expect = 2.5
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Query: 467 IGIVGRTGAGKSSL---LVALFR-LVELSSGQIKIDDFDIASVELE--TLRSR 513
+GI G GAGKS+L L AL + EL + Q+ +D F + + L+ LR R
Sbjct: 36 VGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPR 88
Score = 29.1 bits (66), Expect = 5.9
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 526 GIVGRTGAGKSSL---LVALFR-LVELSSGQIKIDDFDIASVELE--TLRSR 571
GI G GAGKS+L L AL + EL + Q+ +D F + + L+ LR R
Sbjct: 37 GIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPR 88
>gnl|CDD|224194 COG1275, TehA, Tellurite resistance protein and related permeases
[Inorganic ion transport and metabolism].
Length = 329
Score = 30.8 bits (70), Expect = 2.7
Identities = 23/117 (19%), Positives = 38/117 (32%), Gaps = 6/117 (5%)
Query: 57 FVFPWFALPLLIITTLYHLISKVFRSVYLRSTDEVFQNMWSMLFAFLMICFVFPWFALPL 116
F WFA + L F + LR+ V +F L+I ++ P
Sbjct: 9 FPPSWFASVMGTGGLGLALGLFSFSFLLLRTLSYVLFYFALAIFFLLLIVWILKLIKYPN 68
Query: 117 LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLI 173
+I L H + F + + +ML + ++ P A L L
Sbjct: 69 TVIADLNHPVVSSFVPTFP------IATMLLSSYLLYPGLPLLAYVLWWFGVALQLF 119
Score = 29.2 bits (66), Expect = 7.9
Identities = 42/292 (14%), Positives = 84/292 (28%), Gaps = 47/292 (16%)
Query: 1 MLFAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVIQNMWSMLFAFLMICFVFP 60
+F L+I ++ P +I L H + F + + +ML + ++ P
Sbjct: 50 AIFFLLLIVWILKLIKYPNTVIADLNHPVVSSFVPTFP------IATMLLSSYLLYPGLP 103
Query: 61 WFALPLLIITTLYHLISKVFRSVYLRSTDEVFQNM----WSMLFAFLMICFVFPWFALPL 116
A L L + L + W + +++ +L
Sbjct: 104 LLAYVLWWFGVALQLFFSAWFIYSLFRGKKFELETITPSWFLPPVGIIVA------SLTA 157
Query: 117 LIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKV 176
++ Y +I VF S + +LF ++ P T L
Sbjct: 158 SVLLGAYFVIGYVFFGAGFFS-----YLVLFPIVLYRLFTAGLLPPAARPTIFIQLAPIG 212
Query: 177 FRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTL-------------------Y 217
V L + + S+ F ++ F + LL++ +
Sbjct: 213 LVGVGLLLIVNSGPSLTFVLILWGFGLLFLFFALLLLLRVLLRLPFSPSWWAFTFPLVIL 272
Query: 218 HLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISK 269
+ VF + +L FL+ +L++ I K
Sbjct: 273 ATSALELGKSIGIGVFHYLGLILGTFLIFI-------WIVLLVAYTIRAIRK 317
>gnl|CDD|206665 cd01876, YihA_EngB, YihA (EngB) GTPase family. The YihA (EngB)
subfamily of GTPases is typified by the E. coli YihA, an
essential protein involved in cell division control.
YihA and its orthologs are small proteins that typically
contain less than 200 amino acid residues and consists
of the GTPase domain only (some of the eukaryotic
homologs contain an N-terminal extension of about 120
residues that might be involved in organellar
targeting). Homologs of yihA are found in most
Gram-positive and Gram-negative pathogenic bacteria,
with the exception of Mycobacterium tuberculosis. The
broad-spectrum nature of YihA and its essentiality for
cell viability in bacteria make it an attractive
antibacterial target.
Length = 170
Score = 29.8 bits (68), Expect = 2.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 467 IGIVGRTGAGKSSLLVALFR 486
+ GR+ GKSSL+ AL
Sbjct: 2 VAFAGRSNVGKSSLINALTN 21
Score = 29.0 bits (66), Expect = 4.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 527 IVGRTGAGKSSLLVALFR 544
GR+ GKSSL+ AL
Sbjct: 4 FAGRSNVGKSSLINALTN 21
>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc
(COR) domain family. RocCOR (or Roco) protein family is
characterized by a superdomain containing a Ras-like
GTPase domain, called Roc (Ras of complex proteins), and
a characteristic second domain called COR (C-terminal of
Roc). A kinase domain and diverse regulatory domains are
also often found in Roco proteins. Their functions are
diverse; in Dictyostelium discoideum, which encodes 11
Roco proteins, they are involved in cell division,
chemotaxis and development, while in human, where 4 Roco
proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded,
these proteins are involved in epilepsy and cancer.
Mutations in LRRK2 (leucine-rich repeat kinase 2) are
known to cause familial Parkinson's disease.
Length = 161
Score = 29.6 bits (67), Expect = 2.9
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 469 IVGRTGAGKSSLLVAL----FRLVELSSGQIKIDDFDIASVELETLR 511
+VG+ G GK+SL L F E S+ I + D+ I + E + +R
Sbjct: 6 LVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIR 52
Score = 29.6 bits (67), Expect = 2.9
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 527 IVGRTGAGKSSLLVAL----FRLVELSSGQIKIDDFDIASVELETLR 569
+VG+ G GK+SL L F E S+ I + D+ I + E + +R
Sbjct: 6 LVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIR 52
>gnl|CDD|206666 cd01878, HflX, HflX GTPase family. HflX subfamily. A distinct
conserved domain with a glycine-rich segment N-terminal
of the GTPase domain characterizes the HflX subfamily.
The E. coli HflX has been implicated in the control of
the lambda cII repressor proteolysis, but the actual
biological functions of these GTPases remain unclear.
HflX is widespread, but not universally represented in
all three superkingdoms.
Length = 204
Score = 30.1 bits (69), Expect = 3.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 467 IGIVGRTGAGKSSLLVAL 484
+ +VG T AGKS+L AL
Sbjct: 44 VALVGYTNAGKSTLFNAL 61
>gnl|CDD|238550 cd01130, VirB11-like_ATPase, Type IV secretory pathway component
VirB11, and related ATPases. The homohexamer, VirB11 is
one of eleven Vir proteins, which are required for
T-pilus biogenesis and virulence in the transfer of
T-DNA from the Ti (tumor-inducing) plasmid of bacterial
to plant cells. The pilus is a fibrous cell surface
organelle, which mediates adhesion between bacteria
during conjugative transfer or between bacteria and host
eukaryotic cells during infection. VirB11- related
ATPases include the archaeal flagella biosynthesis
protein and the pilus assembly proteins CpaF/TadA and
TrbB. This alignment contains the C-terminal domain,
which is the ATPase.
Length = 186
Score = 29.9 bits (68), Expect = 3.0
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 461 INHGENIGIVGRTGAGKSSLLVAL 484
+ +NI I G TG+GK++LL AL
Sbjct: 22 VEARKNILISGGTGSGKTTLLNAL 45
>gnl|CDD|234015 TIGR02788, VirB11, P-type DNA transfer ATPase VirB11. The VirB11
protein is found in the vir locus of Agrobacterium Ti
plasmids where it is involved in the type IV secretion
system for DNA transfer. VirB11 is believed to be an
ATPase. VirB11 is a homolog of the P-like conjugation
system TrbB protein and the Flp pilus sytem protein
TadA.
Length = 308
Score = 30.4 bits (69), Expect = 3.1
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 461 INHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 499
I +NI I G TG+GK++ L +L + I I+D
Sbjct: 141 IASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED 179
>gnl|CDD|237536 PRK13873, PRK13873, conjugal transfer ATPase TrbE; Provisional.
Length = 811
Score = 30.6 bits (70), Expect = 3.2
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 11/47 (23%)
Query: 451 PLVLANVS----FRIN-HGENIG---IVGRTGAGKSSLLVAL---FR 486
PL+ A FR++ H ++G +VG TGAGKS LL + FR
Sbjct: 420 PLLYARTEGSTPFRLSLHVGDVGHTLVVGPTGAGKSVLLALMALQFR 466
>gnl|CDD|227391 COG5058, LAG1, Protein transporter of the TRAM (translocating
chain-associating membrane) superfamily, longevity
assurance factor [Intracellular trafficking and
secretion].
Length = 395
Score = 30.6 bits (69), Expect = 3.2
Identities = 42/221 (19%), Positives = 76/221 (34%), Gaps = 34/221 (15%)
Query: 70 TTLYHLISKVFRSVYLRSTDEVFQN---MW---------SMLFAFLMICFVFPWFALPLL 117
Y+ +S F +RS+ F N ++ + AF +I F W +
Sbjct: 163 AIFYYGVSGPFGLYVMRSSPLWFFNTKALYETYPVFYNPFLFKAFYLIQAAF-WAQQACI 221
Query: 118 IITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVF 177
++ L R + VF ++ ++L +L F F L + I +S F
Sbjct: 222 LVLQLEKP-----RKDFKELVFHHIVTLLLIWLSYVFHFTRMGLAIYIT----MDVSDFF 272
Query: 178 RSV-----YLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSV 232
S+ YL SV F+ FVF W + + + FR++ +
Sbjct: 273 LSLSKTLNYLNSVLAT-------FIFGIFVFIWIYSRHYLNLKILWSVLTAFRTIGNFVL 325
Query: 233 FQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRI 273
+ AL L+ I L+ ++ +R+
Sbjct: 326 DVATQQYKCWISLPIVFILLQALQLVNIYWLFLIVRVAYRV 366
>gnl|CDD|223692 COG0619, CbiQ, ABC-type cobalt transport system, permease component
CbiQ and related transporters [Inorganic ion transport
and metabolism].
Length = 252
Score = 30.0 bits (68), Expect = 3.3
Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 8/91 (8%)
Query: 193 LFAFLMICFVF----PWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICF 248
L FL+I VF L +L++T L +++K+ L + + +L F
Sbjct: 23 LLLFLLIILVFLLNDLVLLLIILLLTLLLVVLAKIPLKFLLLLLGFLLLGLLLIAFTNGF 82
Query: 249 V----FPWFALPLLIITTLYHLISKVFRIAV 275
F L + I +L + R+ +
Sbjct: 83 SLGPAVGLFGLGPVTIGSLVLGLLIALRVLL 113
Score = 29.3 bits (66), Expect = 5.5
Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 8/90 (8%)
Query: 2 LFAFLMICFVF----PWFALPLLIITTLYHLISKVFRSVYLRSVIQNMWSMLFAFLMICF 57
L FL+I VF L +L++T L +++K+ L + + +L F
Sbjct: 23 LLLFLLIILVFLLNDLVLLLIILLLTLLLVVLAKIPLKFLLLLLGFLLLGLLLIAFTNGF 82
Query: 58 V----FPWFALPLLIITTLYHLISKVFRSV 83
F L + I +L + R +
Sbjct: 83 SLGPAVGLFGLGPVTIGSLVLGLLIALRVL 112
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 30.2 bits (68), Expect = 3.4
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 19/100 (19%)
Query: 433 RQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVE--- 489
R TI+FK D W + VS + GE G+VG +G+GKS + A+ + +
Sbjct: 7 RNLTIEFKTS-----DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNW 61
Query: 490 -LSSGQIKIDDFDIASVELETLRSR-------LSVIPQDP 521
+++ +++ DD D+ + + R R +S+I Q+P
Sbjct: 62 RVTADRMRFDDIDLLRL---SPRERRKLVGHNVSMIFQEP 98
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 29.8 bits (68), Expect = 3.6
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 454 LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 502
L ++S ++ GE I+G GAGK++++ + G + D+
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDL 66
>gnl|CDD|183704 PRK12726, PRK12726, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 407
Score = 30.1 bits (67), Expect = 3.8
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 12/91 (13%)
Query: 428 LADWPRQGTIKFKNVSLRYRDN---W--PLVLANV----SFRINHGENIGIVGRTGAGKS 478
+AD+ + G +FK V + D+ W P + + SF +++ I ++G+TG GK+
Sbjct: 161 VADFMQAGRKQFKQVETAHLDDITDWFVPYLSGKLAVEDSFDLSNHRIISLIGQTGVGKT 220
Query: 479 SLLVAL-FRLVELSS--GQIKIDDFDIASVE 506
+ LV L ++L++ + G I D F +VE
Sbjct: 221 TTLVKLGWQLLKQNRTVGFITTDTFRSGAVE 251
>gnl|CDD|110677 pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein
contains an ATP/GTP binding P-loop motif. It is found
associated with IS21 family insertion sequences. The
function of this protein is unknown, but it may perform
a transposase function.
Length = 178
Score = 29.5 bits (67), Expect = 3.9
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 454 LANVSFRINHGENIGIVGRTGAGKSSLLVAL 484
LA + + I EN+ ++G G GK+ L AL
Sbjct: 38 LAGLDW-IEQAENLLLLGPPGVGKTHLACAL 67
>gnl|CDD|206690 cd04104, p47_IIGP_like, p47 GTPase family includes IGTP, TGTP/Mg21,
IRG-47, GTPI, LRG-47, and IIGP1. The p47 GTPase family
consists of several highly homologous proteins,
including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and
IIGP1. They are found in higher eukaryotes where they
play a role in immune resistance against intracellular
pathogens. p47 proteins exist at low resting levels in
mouse cells, but are strongly induced by Type II
interferon (IFN-gamma). ITGP is critical for resistance
to Toxoplasma gondii infection and in involved in
inhibition of Coxsackievirus-B3-induced apoptosis. TGTP
was shown to limit vesicular stomatitis virus (VSV)
infection of fibroblasts in vitro. IRG-47 is involved in
resistance to T. gondii infection. LRG-47 has been
implicated in resistance to T. gondii, Listeria
monocytogenes, Leishmania, and mycobacterial infections.
IIGP1 has been shown to localize to the ER and to the
Golgi membranes in IFN-induced cells and inflamed
tissues. In macrophages, IIGP1 interacts with hook3, a
microtubule binding protein that participates in the
organization of the cis-Golgi compartment.
Length = 197
Score = 29.6 bits (67), Expect = 4.0
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 466 NIGIVGRTGAGKSSLLVAL 484
NI + G +GAGKSS + AL
Sbjct: 3 NIAVTGESGAGKSSFINAL 21
>gnl|CDD|237358 PRK13351, PRK13351, elongation factor G; Reviewed.
Length = 687
Score = 30.3 bits (69), Expect = 4.1
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 466 NIGIVGRTGAGKSSLLVAL 484
NIGI+ AGK++L +
Sbjct: 10 NIGILAHIDAGKTTLTERI 28
>gnl|CDD|206682 cd01895, EngA2, EngA2 GTPase contains the second domain of EngA.
This EngA2 subfamily CD represents the second GTPase
domain of EngA and its orthologs, which are composed of
two adjacent GTPase domains. Since the sequences of the
two domains are more similar to each other than to other
GTPases, it is likely that an ancient gene duplication,
rather than a fusion of evolutionarily distinct GTPases,
gave rise to this family. Although the exact function of
these proteins has not been elucidated, studies have
revealed that the E. coli EngA homolog, Der, and
Neisseria gonorrhoeae EngA are essential for cell
viability. A recent report suggests that E. coli Der
functions in ribosome assembly and stability.
Length = 174
Score = 29.3 bits (67), Expect = 4.2
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 467 IGIVGRTGAGKSSLLVAL 484
I I+GR GKSSLL AL
Sbjct: 5 IAIIGRPNVGKSSLLNAL 22
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 30.0 bits (68), Expect = 4.3
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 454 LANVSFRINHGENIGIVGRTGAGKSSLLVAL 484
L NVS GE + ++G +GAGK++L+ AL
Sbjct: 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNAL 71
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 30.2 bits (69), Expect = 4.4
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 461 INHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKID 498
I GE IGIVG G GK++ L +++ G++ +
Sbjct: 362 IYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE 399
>gnl|CDD|237039 PRK12288, PRK12288, GTPase RsgA; Reviewed.
Length = 347
Score = 29.8 bits (68), Expect = 4.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 470 VGRTGAGKSSLLVALFRLVELSSGQI 495
VG++G GKSSL+ AL E+ G +
Sbjct: 211 VGQSGVGKSSLINALLPEAEILVGDV 236
Score = 29.8 bits (68), Expect = 4.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 528 VGRTGAGKSSLLVALFRLVELSSGQI 553
VG++G GKSSL+ AL E+ G +
Sbjct: 211 VGQSGVGKSSLINALLPEAEILVGDV 236
>gnl|CDD|149215 pfam08006, DUF1700, Protein of unknown function (DUF1700). This
family contains many hypothetical bacterial proteins and
two putative membrane proteins.
Length = 181
Score = 29.5 bits (67), Expect = 4.5
Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 11/113 (9%)
Query: 173 ISKVFRSVYLRSVFQNMWSML------FAFLMICFVFPWFALPLLIITTLYHLISKVFRS 226
I K + ++++F+ + ++L F ++I F+ + L I L L+S +
Sbjct: 66 IDKAEKKPSVKNIFRAILAVLGLGLFNFIIILIPFIILILLVLSLWIIGLVLLLSPLILL 125
Query: 227 VYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELK 279
V +F + ++F F F L LL+ +Y+L ++R+ V+ LK
Sbjct: 126 VK--GIFGGFFFIIFNVF---FSIGLFGLGLLLAIVMYYLTKLLYRLLVKYLK 173
>gnl|CDD|223472 COG0395, UgpE, ABC-type sugar transport system, permease component
[Carbohydrate transport and metabolism].
Length = 281
Score = 29.8 bits (68), Expect = 4.5
Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 133 VYLRSVFQNMWSMLFAFLMICFVFPW--FALPLLIITTLYHLISKVFRSVYLRSVFQNMW 190
++ + V L A + F+ W F PL+++++ L V + + S W
Sbjct: 187 IFFKIVLPLAKPGLAAVAIFTFIGAWNEFLWPLILLSSPNLLTLPVGLNSFGGSEGGTDW 246
Query: 191 SMLFAFLMICFVFPWFALPLLII 213
++ A ++ LP+LI+
Sbjct: 247 GLIMAAAVL------AILPVLIV 263
>gnl|CDD|222165 pfam13481, AAA_25, AAA domain. This AAA domain is found in a wide
variety of presumed DNA repair proteins.
Length = 154
Score = 28.8 bits (65), Expect = 5.0
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 464 GENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
G + G G GKS+L + L +++G+
Sbjct: 33 GGLTLLAGAPGTGKSTLALDL--AAAVATGR 61
>gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed.
Length = 435
Score = 30.0 bits (69), Expect = 5.0
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 467 IGIVGRTGAGKSSLLVAL 484
I I+GR GKSSL+ AL
Sbjct: 176 IAIIGRPNVGKSSLINAL 193
>gnl|CDD|215427 PLN02796, PLN02796, D-glycerate 3-kinase.
Length = 347
Score = 29.7 bits (67), Expect = 5.0
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 506 ELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELS---SGQIKIDDFDIAS 562
+LE RS+ + P L GI G GK++L+ AL L + + + IDDF + +
Sbjct: 84 QLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTA 143
Query: 563 VELETLRSR 571
+ L
Sbjct: 144 ADQAKLAEA 152
Score = 29.7 bits (67), Expect = 5.9
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 467 IGIVGRTGAGKSSLLVALFRLVELS---SGQIKIDDFDIASVELETLRSR 513
IGI G GK++L+ AL L + + + IDDF + + + L
Sbjct: 103 IGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAEA 152
>gnl|CDD|233509 TIGR01652, ATPase-Plipid, phospholipid-translocating P-type ATPase,
flippase. This model describes the P-type ATPase
responsible for transporting phospholipids from one
leaflet of bilayer membranes to the other. These ATPases
are found only in eukaryotes.
Length = 1057
Score = 30.0 bits (68), Expect = 5.1
Identities = 27/175 (15%), Positives = 58/175 (33%), Gaps = 18/175 (10%)
Query: 53 LMICFVFPWFALPLLIITTLYHLIS----KVFRSVYLRSTDEVFQN----MWSMLFAFL- 103
M+ + + ALP++ + +S + +Y + ML
Sbjct: 867 YMVLYNVFFTALPVISLGVFDQDVSASLSLRYPQLYREGQKGQGFSTKTFWGWMLDGIYQ 926
Query: 104 -MICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALP 162
++ F FP FA L + + V + + + + + + W +L
Sbjct: 927 SLVIFFFPMFAYILGDFVSSGSVDDFSSVGVIVFTAL--VVIVNLKIALEINRWNWISLI 984
Query: 163 LLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFP-WFALPLLIITTL 216
+ + L LI + S S + A + F W L ++++ +L
Sbjct: 985 TIWGSILVWLIFVIVYSSIFPS-----PAFYKAAPRVMGTFGFWLVLLVIVLISL 1034
>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain. Proteins
with a small GTP-binding domain recognized by this model
include Ras, RhoA, Rab11, translation elongation factor
G, translation initiation factor IF-2, tetratcycline
resistance protein TetM, CDC42, Era, ADP-ribosylation
factors, tdhF, and many others. In some proteins the
domain occurs more than once.This model recognizes a
large number of small GTP-binding proteins and related
domains in larger proteins. Note that the alpha chains
of heterotrimeric G proteins are larger proteins in
which the NKXD motif is separated from the GxxxxGK[ST]
motif (P-loop) by a long insert and are not easily
detected by this model [Unknown function, General].
Length = 162
Score = 28.9 bits (65), Expect = 5.4
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 466 NIGIVGRTGAGKSSLL 481
I IVG GKS+LL
Sbjct: 3 KIVIVGDPNVGKSTLL 18
>gnl|CDD|200328 TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase.
Members of this protein family comprise a distinct
clade of putative ATPase associated with an integral
membrane complex likely to act in pilus formation,
secretion, or conjugal transfer. The association of most
members with a nearby gene for a DEAH-box helicase
suggests a role in conjugal transfer.
Length = 340
Score = 29.6 bits (67), Expect = 5.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 469 IVGRTGAGKSSLLVALFRLVE 489
+ G TG+GK++LL AL LV
Sbjct: 183 VSGGTGSGKTTLLSALLALVP 203
Score = 29.6 bits (67), Expect = 5.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 527 IVGRTGAGKSSLLVALFRLVE 547
+ G TG+GK++LL AL LV
Sbjct: 183 VSGGTGSGKTTLLSALLALVP 203
>gnl|CDD|213243 cd03276, ABC_SMC6_euk, ATP-binding cassette domain of eukaryotic
SM6 proteins. The structural maintenance of chromosomes
(SMC) proteins are large (approximately 110 to 170 kDa),
and each is arranged into five recognizable domains.
Amino-acid sequence homology of SMC proteins between
species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 198
Score = 29.1 bits (66), Expect = 5.9
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 458 SFRINHGENIG-IVGRTGAGKSSLLVAL 484
+I G + IVG G+GKS++L AL
Sbjct: 14 HLQIEFGPRVNFIVGNNGSGKSAILTAL 41
Score = 28.7 bits (65), Expect = 8.5
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 525 NGIVGRTGAGKSSLLVAL 542
N IVG G+GKS++L AL
Sbjct: 24 NFIVGNNGSGKSAILTAL 41
>gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA. EngA
(YfgK, Der) is a ribosome-associated essential GTPase
with a duplication of its GTP-binding domain. It is
broadly to universally distributed among bacteria. It
appears to function in ribosome biogenesis or stability
[Protein synthesis, Other].
Length = 429
Score = 29.3 bits (67), Expect = 6.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 467 IGIVGRTGAGKSSLLVAL 484
I I+GR GKS+L+ AL
Sbjct: 175 IAIIGRPNVGKSTLVNAL 192
>gnl|CDD|206726 cd04163, Era, E. coli Ras-like protein (Era) is a multifunctional
GTPase. Era (E. coli Ras-like protein) is a
multifunctional GTPase found in all bacteria except some
eubacteria. It binds to the 16S ribosomal RNA (rRNA) of
the 30S subunit and appears to play a role in the
assembly of the 30S subunit, possibly by chaperoning the
16S rRNA. It also contacts several assembly elements of
the 30S subunit. Era couples cell growth with
cytokinesis and plays a role in cell division and energy
metabolism. Homologs have also been found in eukaryotes.
Era contains two domains: the N-terminal GTPase domain
and a C-terminal domain KH domain that is critical for
RNA binding. Both domains are important for Era
function. Era is functionally able to compensate for
deletion of RbfA, a cold-shock adaptation protein that
is required for efficient processing of the 16S rRNA.
Length = 168
Score = 28.6 bits (65), Expect = 7.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 523 LFNGIVGRTGAGKSSLLVAL 542
F I+GR GKS+LL AL
Sbjct: 4 GFVAIIGRPNVGKSTLLNAL 23
>gnl|CDD|216329 pfam01148, CTP_transf_1, Cytidylyltransferase family. The members
of this family are integral membrane protein
cytidylyltransferases. The family includes phosphatidate
cytidylyltransferase EC:2.7.7.41 as well as Sec59 from
yeast. Sec59 is a dolichol kinase EC:2.7.1.108.
Length = 259
Score = 28.9 bits (65), Expect = 7.7
Identities = 14/117 (11%), Positives = 34/117 (29%), Gaps = 1/117 (0%)
Query: 96 WSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFV 155
+L +I LL+ + + ++ R + L+ + + L+ +
Sbjct: 7 HIVLILIFLILLFLGPLIFLLLVAAIIILALYELIRLLRLKFSSRLLLLTRGLGLIFYLL 66
Query: 156 FPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLI 212
++ ++ + L + L + F F LLI
Sbjct: 67 GLLLVYGEGLLALFGLVLLVIPVLWLLVLPVLAYHRVSSTLLPL-FYVGLFLSLLLI 122
Score = 28.9 bits (65), Expect = 7.7
Identities = 14/117 (11%), Positives = 34/117 (29%), Gaps = 1/117 (0%)
Query: 143 WSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFV 202
+L +I LL+ + + ++ R + L+ + + L+ +
Sbjct: 7 HIVLILIFLILLFLGPLIFLLLVAAIIILALYELIRLLRLKFSSRLLLLTRGLGLIFYLL 66
Query: 203 FPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLI 259
++ ++ + L + L + F F LLI
Sbjct: 67 GLLLVYGEGLLALFGLVLLVIPVLWLLVLPVLAYHRVSSTLLPL-FYVGLFLSLLLI 122
>gnl|CDD|221803 pfam12846, AAA_10, AAA-like domain. This family of domains contain
a P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins.
Length = 316
Score = 28.9 bits (65), Expect = 8.1
Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 9/114 (7%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL-ETLRSR-LSVIPQDPVLFNG 584
IVG +G+GKS+LL L + G++ + D L L + + P + N
Sbjct: 6 IVGPSGSGKSTLLKLLALRLLARGGRVIVIDPKGEYSGLARALGGEVIDLGPGSGISLNP 65
Query: 585 TIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLL 638
LD F D E +A + ++ + + + G L+ E+ L
Sbjct: 66 -----LDIFPTGEDAEELEADAHARKLDLLLALLE--LAALLGRDLTPREETAL 112
>gnl|CDD|225171 COG2262, HflX, GTPases [General function prediction only].
Length = 411
Score = 29.2 bits (66), Expect = 8.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 467 IGIVGRTGAGKSSLLVALFRLVELSSGQ 494
+ +VG T AGKS+L AL + Q
Sbjct: 195 VALVGYTNAGKSTLFNALTGADVYVADQ 222
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 28.8 bits (65), Expect = 8.1
Identities = 27/127 (21%), Positives = 41/127 (32%), Gaps = 12/127 (9%)
Query: 51 AFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSTDEVFQNMWSMLFAFLMICFVFP 110
A ++I V W LL + L + + + F + L+ +
Sbjct: 95 AKVLILVV--WVLALLLSLPPLLFSWLRTVEEGNVTTCLIDFPEESTKRSYTLLSTLLG- 151
Query: 111 WFALPLLIITTLYHLISKVFRSVYLRSVFQNMWS--------MLFAFLMICFVFPWFALP 162
F LPLL+I Y LI + R Q L++ VF LP
Sbjct: 152 -FVLPLLVILVCYTLILRTLRKRARSGASQARAKRSSSKERKAAKMLLVVVVVFVLCWLP 210
Query: 163 LLIITTL 169
I+ L
Sbjct: 211 YHIVLLL 217
>gnl|CDD|234188 TIGR03371, cellulose_yhjQ, cellulose synthase operon protein YhjQ.
Members of this family are the YhjQ protein, found
immediately upsteam of bacterial cellulose synthase
(bcs) genes in a broad range of bacteria, including both
copies of the bcs locus in Klebsiella pneumoniae. In
several species it is seen clearly as part of the bcs
operon. It is identified as a probable component of the
bacterial cellulose metabolic process not only by gene
location, but also by partial phylogenetic profiling, or
Haft-Selengut algorithm (PMID:16930487), based on a
bacterial cellulose biosynthesis genome property
profile. Cellulose plays an important role in biofilm
formation and structural integrity in some bacteria.
Mutants in yhjQ in Escherichia coli, show altered
morphology an growth, but the function of YhjQ has not
yet been determined [Cell envelope, Biosynthesis and
degradation of surface polysaccharides and
lipopolysaccharides].
Length = 246
Score = 28.8 bits (65), Expect = 8.3
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 467 IGIVG-RTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV 505
I IV R G GK++L L ++L + D D ++
Sbjct: 4 IAIVSVRGGVGKTTLTANLASALKLLGEPVLAIDLDPQNL 43
>gnl|CDD|224081 COG1159, Era, GTPase [General function prediction only].
Length = 298
Score = 29.1 bits (66), Expect = 8.4
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 467 IGIVGRTGAGKSSLLVAL 484
+ I+GR GKS+LL AL
Sbjct: 9 VAIIGRPNVGKSTLLNAL 26
>gnl|CDD|223296 COG0218, COG0218, Predicted GTPase [General function prediction
only].
Length = 200
Score = 28.4 bits (64), Expect = 9.4
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 500 FDIASVELETLRSRLSVIPQDP---VLFNGIVGRTGAGKSSLLVALFR 544
+ + T + P+D + F GR+ GKSSL+ AL
Sbjct: 2 LNYHKAKFITSAPDIKQYPEDDLPEIAF---AGRSNVGKSSLINALTN 46
>gnl|CDD|224391 COG1474, CDC6, Cdc6-related protein, AAA superfamily ATPase [DNA
replication, recombination, and repair /
Posttranslational modification, protein turnover,
chaperones].
Length = 366
Score = 28.9 bits (65), Expect = 9.5
Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 15/125 (12%)
Query: 443 SLRYRDNWPLVLANVSFRINHGE---NIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 499
L +R+ LA+ GE NI I G TG GK++ + + +E SS +
Sbjct: 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESS-----AN 72
Query: 500 FDIASVELETLRSRLSVIPQDPVLFNGIVG--RTGAGKSSLLVALFRLVELSSGQ--IKI 555
++ + LR+ V+ + + N + TG +L L+ + + +
Sbjct: 73 VEVVYINCLELRTPYQVLSK---ILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVIL 129
Query: 556 DDFDI 560
D+ D
Sbjct: 130 DEVDA 134
>gnl|CDD|225363 COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus
assembly pathway, ATPase PilB [Cell motility and
secretion / Intracellular trafficking and secretion].
Length = 500
Score = 28.8 bits (65), Expect = 10.0
Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 27/105 (25%)
Query: 456 NVSFRIN-----HGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL 510
V FR++ +GE + + R+++ + ++ ++ +L L
Sbjct: 207 KVDFRVSTLPTFYGEKV----------------VLRILDKDQVILDLEKLGMSPFQLARL 250
Query: 511 RSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKI 555
RL PQ +L G TG+GK++ L A L EL++ + I
Sbjct: 251 L-RLLNRPQGLILVTG---PTGSGKTTTLYAA--LSELNTPERNI 289
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.332 0.142 0.440
Gapped
Lambda K H
0.267 0.0746 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 34,939,877
Number of extensions: 3590576
Number of successful extensions: 10024
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8693
Number of HSP's successfully gapped: 1521
Length of query: 677
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 574
Effective length of database: 6,369,140
Effective search space: 3655886360
Effective search space used: 3655886360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 62 (27.6 bits)