RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy845
(677 letters)
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 244 bits (625), Expect = 9e-75
Identities = 71/278 (25%), Positives = 108/278 (38%), Gaps = 90/278 (32%)
Query: 429 ADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV 488
WP G + K+++ +Y + +L N+SF I+ G+ +G++GRTG+GKS+LL A RL+
Sbjct: 12 DIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL 71
Query: 489 ELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVEL 548
+ G+I+ID S+ LE R VIPQ +F+G
Sbjct: 72 N-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSG---------------------- 108
Query: 549 SSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKS 608
T R NLDP D E+W ++
Sbjct: 109 ------------------TFR------------------KNLDPNAAHSDQEIWKVADEV 132
Query: 609 HLKSKVVTMRSKLDSDVQ--GDQLSLGEKQLLCLARALLRKTK----------------- 649
L+S + KLD + G LS G KQL+CLAR++L K K
Sbjct: 133 GLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ 192
Query: 650 -------KKKKSGVNIT-----RPVTSCDKVLVMDNGQ 675
+ I + CD+ LV++ +
Sbjct: 193 IIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENK 230
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 128 bits (323), Expect = 6e-33
Identities = 62/219 (28%), Positives = 98/219 (44%), Gaps = 64/219 (29%)
Query: 432 PRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS 491
++G I+F+NV Y D L +VSF + G++ +A
Sbjct: 49 FQKGRIEFENVHFSYADGRE-TLQDVSFTVM------------PGQT---LA-------- 84
Query: 492 SGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSG 551
+VG +GAGKS++L LFR ++SSG
Sbjct: 85 -----------------------------------LVGPSGAGKSTILRLLFRFYDISSG 109
Query: 552 QIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCH--DTELWDALEKSH 609
I+ID DI+ V +LRS + V+PQD VLFN TI N+ +GR + E+ A + +
Sbjct: 110 CIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNI-RYGRVTAGNDEVEAAAQAAG 168
Query: 610 LKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLR 646
+ ++ + V +G +LS GEKQ + +AR +L+
Sbjct: 169 IHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILK 207
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 128 bits (325), Expect = 1e-31
Identities = 69/302 (22%), Positives = 134/302 (44%), Gaps = 15/302 (4%)
Query: 229 LRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSP 288
L +++ + +++ A ++ F+ L L I Y L VF +R+L R + + +
Sbjct: 139 LMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAE 198
Query: 289 IFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIA 348
+ + V G+ ++ F E + + F ++ T + + I+ + I
Sbjct: 199 VQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIG 258
Query: 349 MAIIT--GLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNC- 405
I+ G +A GS++ + Y + G L+ V F +F +++R+
Sbjct: 259 PIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLI 318
Query: 406 -SKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHG 464
+ G G E +QG I +VS +Y DN +L +++ I G
Sbjct: 319 DEDYDIKNGVGAQPIE-----------IKQGRIDIDHVSFQYNDNEAPILKDINLSIEKG 367
Query: 465 ENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF 524
E + VG +G GKS+L+ + R +++SGQI ID +I +LR+++ ++ QD +LF
Sbjct: 368 ETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILF 427
Query: 525 NG 526
+
Sbjct: 428 SD 429
Score = 99.6 bits (249), Expect = 5e-22
Identities = 40/125 (32%), Positives = 72/125 (57%), Gaps = 5/125 (4%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
VG +G GKS+L+ + R +++SGQI ID +I +LR+++ ++ QD +LF+ T
Sbjct: 371 AFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDT 430
Query: 586 IRYNLDPFGRCH--DTELWDALEKSHLKSKVVTMRSKLDSDVQ--GDQLSLGEKQLLCLA 641
++ N+ GR D E+ +A + ++ ++ + D++V G +LS G+KQ L +A
Sbjct: 431 VKENI-LLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIA 489
Query: 642 RALLR 646
R L
Sbjct: 490 RIFLN 494
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 127 bits (322), Expect = 4e-31
Identities = 53/302 (17%), Positives = 129/302 (42%), Gaps = 17/302 (5%)
Query: 229 LRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSP 288
L +V + S++ F+M+ + ++ L+++ + + +V R + + +
Sbjct: 143 LITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQ 202
Query: 289 IFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIA 348
+ ++ + G + +F ++ +RF + ++ A I ++A +A
Sbjct: 203 VTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLA 262
Query: 349 MAIIT--GLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNC- 405
+A + + S++ + + + L+ V + + A + +
Sbjct: 263 LAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAIL 322
Query: 406 -SKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHG 464
S++ EG+ I G ++F+NV+ Y L N++ +I G
Sbjct: 323 DSEQEKDEGKRVID-------------RATGDLEFRNVTFTYPGREVPALRNINLKIPAG 369
Query: 465 ENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF 524
+ + +VGR+G+GKS++ + R ++ G I +D D+ L +LR++++++ Q+ LF
Sbjct: 370 KTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLF 429
Query: 525 NG 526
N
Sbjct: 430 ND 431
Score = 104 bits (263), Expect = 1e-23
Identities = 37/125 (29%), Positives = 71/125 (56%), Gaps = 6/125 (4%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
+VGR+G+GKS++ + R ++ G I +D D+ L +LR++++++ Q+ LFN T+
Sbjct: 374 LVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTV 433
Query: 587 RYNLDPFGRCH---DTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLA 641
N+ + R ++ +A ++ + M + LD+ + G LS G++Q + +A
Sbjct: 434 ANNI-AYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIA 492
Query: 642 RALLR 646
RALLR
Sbjct: 493 RALLR 497
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 125 bits (317), Expect = 2e-30
Identities = 87/436 (19%), Positives = 180/436 (41%), Gaps = 100/436 (22%)
Query: 229 LRSVFQNMWSMLFAFLM---ICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVS 285
+R+ + ++ A + + V F +P +++ L K + + + + V+
Sbjct: 145 VRAPLLFVGGIVMAVSINVKLSSVL-IFLIPPIVLL-FVWLTKKGNPLFRKIQESTDEVN 202
Query: 286 RSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDE------NSTTLFLCSMAMRWLAV 339
R V + G+ ++ F +E+ F + + ++ +L + ++ + V
Sbjct: 203 RV-----VRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLFIFIV 257
Query: 340 RIDVLAVI---AMAIITG-LTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELN 395
+ ++AV+ + + + + GS+ A Y + L +
Sbjct: 258 NMGMIAVLWFGGVLVRNNQMEI---GSIM-AY----TNYLMQIMFSLMMIGNILNFIVRA 309
Query: 396 FLAVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLA 455
+ +R+ V + I + + +G++ F+NV RY +N VL+
Sbjct: 310 SASAKRVLE-----VLNEKPAIEEADNALALP----NVEGSVSFENVEFRYFENTDPVLS 360
Query: 456 NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLS 515
V+F + G + ++G TG+GKS+ L+ L
Sbjct: 361 GVNFSVKPGSLVAVLGETGSGKST-------LMNL------------------------- 388
Query: 516 VIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVI 575
IP RL++ G++++D+ D+ +V+L+ LR +S +
Sbjct: 389 -IP-------------------------RLIDPERGRVEVDELDVRTVKLKDLRGHISAV 422
Query: 576 PQDPVLFNGTIRYNLDPFGRCH--DTELWDALEKSHLKSKVVTMRSKLDSDVQ--GDQLS 631
PQ+ VLF+GTI+ NL +GR D E+ +A + + + ++++ DS V+ G S
Sbjct: 423 PQETVLFSGTIKENLK-WGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFS 481
Query: 632 LGEKQLLCLARALLRK 647
G+KQ L +ARAL++K
Sbjct: 482 GGQKQRLSIARALVKK 497
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 117 bits (297), Expect = 5e-30
Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 6/106 (5%)
Query: 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493
I F+N+ RY+ + P++L N++ I GE IGIVGR+G+GKS+L + R +G
Sbjct: 5 HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 494 QIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV------GRTGA 533
Q+ ID D+A + LR ++ V+ QD VL N + G
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGM 110
Score = 99.9 bits (250), Expect = 8e-24
Identities = 40/125 (32%), Positives = 67/125 (53%), Gaps = 5/125 (4%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
GIVGR+G+GKS+L + R +GQ+ ID D+A + LR ++ V+ QD VL N +
Sbjct: 39 GIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRS 98
Query: 586 IRYNLDPFGRCHDT--ELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLA 641
I N+ + ++ A + + + +R ++ V QG LS G++Q + +A
Sbjct: 99 IIDNI-SLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIA 157
Query: 642 RALLR 646
RAL+
Sbjct: 158 RALVN 162
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 123 bits (312), Expect = 7e-30
Identities = 53/312 (16%), Positives = 120/312 (38%), Gaps = 37/312 (11%)
Query: 229 LRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSP 288
L S+ + S++ ++ + +L L+++ + R++ R +
Sbjct: 143 LVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGH 202
Query: 289 IFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVR----IDVL 344
+ S+ + G ++ + ++ +RF D+ S ++ +M + I ++
Sbjct: 203 VTSSAEQMLKGHKVVLSYGGQEVERKRF----DKVSNSMRQQTMKLVSAQSIADPVIQMI 258
Query: 345 AVIAMAIIT--GLTVAFHGSVSPALAGLALTYASHVTGLLQFT------VRVFVETELNF 396
A +A+ + + ++P T+ + + V E +
Sbjct: 259 ASLALFAVLFLASVDSIRAELTPG------TFTVVFSAMFGLMRPLKALTSVTSEFQRGM 312
Query: 397 LAVERINNC--SKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVL 454
A + + + G+ G + K+V+ Y+ L
Sbjct: 313 AACQTLFGLMDLETERDNGKYEAE-------------RVNGEVDVKDVTFTYQGKEKPAL 359
Query: 455 ANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514
++VSF I G+ + +VGR+G+GKS++ R ++ SG I +D D+ +L LR
Sbjct: 360 SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF 419
Query: 515 SVIPQDPVLFNG 526
+++ Q+ LFN
Sbjct: 420 ALVSQNVHLFND 431
Score = 102 bits (257), Expect = 5e-23
Identities = 39/125 (31%), Positives = 67/125 (53%), Gaps = 6/125 (4%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
+VGR+G+GKS++ R ++ SG I +D D+ +L LR +++ Q+ LFN TI
Sbjct: 374 LVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTI 433
Query: 587 RYNLDPFGRCHDT---ELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLA 641
N+ + + ++ A ++H + M LD+ + G LS G++Q + +A
Sbjct: 434 ANNI-AYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIA 492
Query: 642 RALLR 646
RALLR
Sbjct: 493 RALLR 497
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 114 bits (288), Expect = 8e-29
Identities = 51/215 (23%), Positives = 87/215 (40%), Gaps = 65/215 (30%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+ ++V Y D+ +L ++SF +A
Sbjct: 2 LSARHVDFAYDDSEQ-ILRDISFEAQ------------PNSI---IAF------------ 33
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKID 556
G +G GKS++ L R + ++G+I ID
Sbjct: 34 -------------------------------AGPSGGGKSTIFSLLERFYQPTAGEITID 62
Query: 557 DFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDT---ELWDALEKSHLKSK 613
I ++ LE RS++ + QD + GTIR NL +G D +LW L+ + +S
Sbjct: 63 GQPIDNISLENWRSQIGFVSQDSAIMAGTIRENL-TYGLEGDYTDEDLWQVLDLAFARSF 121
Query: 614 VVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLR 646
V M +L+++V +G ++S G++Q L +ARA LR
Sbjct: 122 VENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR 156
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 113 bits (284), Expect = 3e-28
Identities = 52/218 (23%), Positives = 90/218 (41%), Gaps = 65/218 (29%)
Query: 434 QGTIKFKNVSLRYRDNWP-LVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS 492
I+F +V+ Y L +++F I +G + A
Sbjct: 15 GVNIEFSDVNFSYPKQTNHRTLKSINFFIP------------SGTT---CA--------- 50
Query: 493 GQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQ 552
+VG TG+GKS++ L+R + G
Sbjct: 51 ----------------------------------LVGHTGSGKSTIAKLLYRFYDAE-GD 75
Query: 553 IKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCH--DTELWDALEKSHL 610
IKI ++ ++RS + ++PQD +LFN TI+YN+ +G+ D E+ A + + L
Sbjct: 76 IKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNI-LYGKLDATDEEVIKATKSAQL 134
Query: 611 KSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLR 646
+ + K D+ V +G +LS GE+Q + +AR LL+
Sbjct: 135 YDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLK 172
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic
peptide, membrane protein; 3.80A {Mus musculus} PDB:
3g61_A* 3g60_A*
Length = 1284
Score = 119 bits (300), Expect = 7e-28
Identities = 105/611 (17%), Positives = 211/611 (34%), Gaps = 181/611 (29%)
Query: 96 WSMLFAFLMIC---FVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQ------NMWSML 146
+ + P F++ + SKV + N++S+L
Sbjct: 705 PYFVVGIFCAIINGGLQPAFSV----------IFSKVVGVFTNGGPPETQRQNSNLFSLL 754
Query: 147 FAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVF-QNMWSMLFAFLMICFVFPW 205
F L I +F L ++ R + +S+ Q++ W
Sbjct: 755 FLILGIISFITFFLQGFTFGKAGEILTKRL-RYMVFKSMLRQDV--------------SW 799
Query: 206 FALPL----LIITTLYHLISKV--FRSVYLRSVFQNMWSMLFAFLMICFVFPW------- 252
F P + T L + ++V L +FQN+ ++ + I ++ W
Sbjct: 800 FDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGII-ISLIYGWQLTLLLL 858
Query: 253 FALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDF 312
+P++ I + + + A+++ K +E + + + +EQ F
Sbjct: 859 AIVPIIAIAGVVEMKM-LSGQALKDKKELEGSG-----KIATEAIENFRTVVSLTREQKF 912
Query: 313 VRRFCEQYDE-------------------NSTTLFLCSMAMRWLAVRI--------DVLA 345
+ + + F + A R+ A + +VL
Sbjct: 913 ETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLL 972
Query: 346 VIAMAIITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNC 405
V + + + V S +P A A ASH+ +++ I++
Sbjct: 973 VFSAIVFGAMAVGQVSSFAPDYAK-ATVSASHIIRIIE--------------KTPEIDSY 1017
Query: 406 SKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRY--RDNWPLVLANVSFRINH 463
S +G P E G ++F V Y R + P VL +S +
Sbjct: 1018 S----TQGLKPNMLE--------------GNVQFSGVVFNYPTRPSIP-VLQGLSLEVK- 1057
Query: 464 GENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL 523
G++ +AL
Sbjct: 1058 -----------KGQT---LAL--------------------------------------- 1064
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 583
VG +G GKS+++ L R + +G + +D +I + ++ LR++L ++ Q+P+LF+
Sbjct: 1065 ----VGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD 1120
Query: 584 GTIRYNL---DPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLL 638
+I N+ D E+ A +++++ + ++ K ++ V +G QLS G+KQ +
Sbjct: 1121 CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRI 1180
Query: 639 CLARALLRKTK 649
+ARAL+R+
Sbjct: 1181 AIARALVRQPH 1191
Score = 91.6 bits (228), Expect = 3e-19
Identities = 98/602 (16%), Positives = 190/602 (31%), Gaps = 167/602 (27%)
Query: 98 MLFAFLMICF-----VFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMI 152
+ +M+ F F T + + + + ++ + +
Sbjct: 62 VALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEM--TTYAYYYTGIGA 119
Query: 153 C-FVFPWFALPLLIITTLYHLISKVFRSVYLRSVF-QNMWSMLFAFLMICFVFPWFAL-- 208
+ + + + R + ++ Q + WF +
Sbjct: 120 GVLIVAYIQVSFWCLAAGR--QIHKIRQKFFHAIMNQEI--------------GWFDVHD 163
Query: 209 PLLIITTLYHLISKV--FRSVYLRSVFQNMWSMLFAFLMICFVFPW------FALPLLII 260
+ T L +SK+ + FQ M + F +I F W A+ ++
Sbjct: 164 VGELNTRLTDDVSKINEGIGDKIGMFFQAM-ATFFGGFIIGFTRGWKLTLVILAISPVLG 222
Query: 261 TTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQY 320
+ + +EL + ++ + + F ++ + R+
Sbjct: 223 LSAGIWAKILSSFTDKELHAYAKAG-----AVAEEVLAAIRTVIAFGGQKKELERYNNNL 277
Query: 321 DE--------------NSTTLFLCSMAMR----WLAVRI---------DVLAVIAMAIIT 353
+E + FL A W + VL V +++
Sbjct: 278 EEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVF-FSVLI 336
Query: 354 GLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLVPEG 413
G G SP + A + VF + I+N
Sbjct: 337 GAFSV--GQASPNIEAFANARGA--------AYEVF----------KIIDNKPSIDSFSK 376
Query: 414 RGPITSEFGQVKVKLADWPRQGTIKFKNVSLRY--RDNWPLVLANVSFRINHGENIGIVG 471
G QG ++FKN+ Y R +L ++ ++
Sbjct: 377 SGHKPDNI------------QGNLEFKNIHFSYPSRKEVQ-ILKGLNLKVK--------- 414
Query: 472 RTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRT 531
+G++ VAL VG +
Sbjct: 415 ---SGQT---VAL-------------------------------------------VGNS 425
Query: 532 GAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLD 591
G GKS+ + + RL + G + ID DI ++ + LR + V+ Q+PVLF TI N+
Sbjct: 426 GCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIR 485
Query: 592 PFGRCHDT--ELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRK 647
+GR T E+ A+++++ ++ + + D+ V +G QLS G+KQ + +ARAL+R
Sbjct: 486 -YGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRN 544
Query: 648 TK 649
K
Sbjct: 545 PK 546
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 104 bits (262), Expect = 1e-23
Identities = 65/318 (20%), Positives = 131/318 (41%), Gaps = 49/318 (15%)
Query: 229 LRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSP 288
+ F + ++ A +M+ V +L L I L LI+++ R+
Sbjct: 155 IIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQ 214
Query: 289 IFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQ----YDENSTTLFLCSMAMRWLAVRIDVL 344
+ + +SGL +I +F +E+ + +F + + + + ++ L
Sbjct: 215 LNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNM-VNNL 273
Query: 345 AVIAMAIITGLTVAFHGSVSPALAGLA--LTYA----------SHVTGLLQFTV----RV 388
++ G ++ + +A + Y+ S+ ++Q + R+
Sbjct: 274 GFALISGFGGWLAL-KDIIT--VGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERI 330
Query: 389 FVETELNFLAVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRD 448
F L +E E P E +V+ G I+FKNV Y
Sbjct: 331 F-----EILDLE----------EEKDDPDAVELREVR---------GEIEFKNVWFSYDK 366
Query: 449 NWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELE 508
P+ L +++F I G+ + +VG TG+GK++++ L R ++ GQI +D DI ++
Sbjct: 367 KKPV-LKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRS 425
Query: 509 TLRSRLSVIPQDPVLFNG 526
+LRS + ++ QD +LF+
Sbjct: 426 SLRSSIGIVLQDTILFST 443
Score = 96.1 bits (240), Expect = 7e-21
Identities = 38/123 (30%), Positives = 71/123 (57%), Gaps = 5/123 (4%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
+VG TG+GK++++ L R ++ GQI +D DI ++ +LRS + ++ QD +LF+ T+
Sbjct: 386 LVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTV 445
Query: 587 RYNLDPFGRCH--DTELWDALEKSHLKSKVVTMRSKLDSDVQGD--QLSLGEKQLLCLAR 642
+ NL +G D E+ +A + +H + + ++ + + LS G++QLL + R
Sbjct: 446 KENL-KYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITR 504
Query: 643 ALL 645
A L
Sbjct: 505 AFL 507
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 96.4 bits (241), Expect = 2e-22
Identities = 49/223 (21%), Positives = 87/223 (39%), Gaps = 67/223 (30%)
Query: 434 QGTIKFKNVSLRY--RDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS 491
+G +KF++VS Y N VL ++F + GK AL
Sbjct: 14 KGLVKFQDVSFAYPNHPNVQ-VLQGLTFTLY------------PGKV---TAL------- 50
Query: 492 SGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSG 551
VG G+GKS++ L L + + G
Sbjct: 51 ------------------------------------VGPNGSGKSTVAALLQNLYQPTGG 74
Query: 552 QIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGR---CHDTELWDALEKS 608
++ +D + + L ++++ + Q+P+LF + R N+ +G E+ +S
Sbjct: 75 KVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENI-AYGLTRTPTMEEITAVAMES 133
Query: 609 HLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTK 649
+ D++V G+QLS G++Q + LARAL+RK +
Sbjct: 134 GAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPR 176
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 94.6 bits (236), Expect = 2e-20
Identities = 62/298 (20%), Positives = 114/298 (38%), Gaps = 13/298 (4%)
Query: 233 FQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSN 292
+ M+ FV P A +L + +I+ ++ +R+L ++ S +
Sbjct: 144 LRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQL 203
Query: 293 VSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWL--AVRIDVLAVIAMA 350
+ + + F KE + ++ + D + A A + ++
Sbjct: 204 AEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSV 263
Query: 351 IITGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLV 410
+ G + ++ L YA V + + E A R+ +
Sbjct: 264 LYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLE--- 320
Query: 411 PEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRY--RDNWPLVLANVSFRINHGENIG 468
R P V + QG ++FKNV Y R P + + S I G
Sbjct: 321 ---REPKLPFNEGVILNEK--SFQGALEFKNVHFAYPARPEVP-IFQDFSLSIPSGSVTA 374
Query: 469 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG 526
+VG +G+GKS++L L RL + +SG I +D DI + LRS++ + Q+P+LF+
Sbjct: 375 LVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSC 432
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 76.0 bits (188), Expect = 8e-16
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 13/95 (13%)
Query: 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493
+ +NV+ + + VL +++F+I G+ + + G TGAGK+SLL+ + +E S G
Sbjct: 4 TTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 63
Query: 494 QIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV 528
+IK R+S Q + G +
Sbjct: 64 KIKH-------------SGRISFCSQFSWIMPGTI 85
Score = 65.3 bits (160), Expect = 4e-12
Identities = 37/172 (21%), Positives = 67/172 (38%), Gaps = 45/172 (26%)
Query: 490 LSSGQIKIDDFDIA--SVELETLRS-RLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLV 546
L++ ++ +++ L+ + + + G TGAGK+SLL+ + +
Sbjct: 2 LTTTEVVMENVTAFWEEGGTPVLKDINFKIERGQLL---AVAGSTGAGKTSLLMMIMGEL 58
Query: 547 ELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYN-LDPFGRCHDTELWDAL 605
E S G+IK R+S Q + GTI+ N + FG +D + +
Sbjct: 59 EPSEGKIKH-------------SGRISFCSQFSWIMPGTIKENII--FGVSYDEYRYRS- 102
Query: 606 EKSHLKSKVVTMRSKLDSDVQ----GDQ---------LSLGEKQLLCLARAL 644
V +L+ D+ D LS G++ + LARA+
Sbjct: 103 ---------VIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAV 145
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 73.3 bits (181), Expect = 8e-15
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 13/94 (13%)
Query: 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
+I +N + + + P L ++F I G + +VG+ G GKSSLL AL ++ G
Sbjct: 2 NSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 495 IKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV 528
+ I + ++ +PQ + N +
Sbjct: 62 VAI-------------KGSVAYVPQQAWIQNDSL 82
Score = 62.6 bits (153), Expect = 4e-11
Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 33/130 (25%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
+VG+ G GKSSLL AL ++ G + I + ++ +PQ + N +
Sbjct: 35 AVVGQVGCGKSSLLSALLAEMDKVEGHVAI-------------KGSVAYVPQQAWIQNDS 81
Query: 586 IRYN-LDPFGRCHDTEL-WDALEKSHLKSKVVTMRSKLDSDVQGDQ---------LSLGE 634
+R N L FG + ++ L L+ GD+ LS G+
Sbjct: 82 LRENIL--FGCQLEEPYYRSVIQACALL-------PDLEILPSGDRTEIGEKGVNLSGGQ 132
Query: 635 KQLLCLARAL 644
KQ + LARA+
Sbjct: 133 KQRVSLARAV 142
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 73.9 bits (182), Expect = 1e-14
Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 21/132 (15%)
Query: 397 LAVERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLAN 456
+ +E + EG G + + Q ++ F N SL VL +
Sbjct: 5 VVMENVT----AFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLL----GTPVLKD 56
Query: 457 VSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV 516
++F+I G+ + + G TGAGK+SLL+ + +E S G+IK R+S
Sbjct: 57 INFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH-------------SGRISF 103
Query: 517 IPQDPVLFNGIV 528
Q+ + G +
Sbjct: 104 CSQNSWIMPGTI 115
Score = 65.4 bits (160), Expect = 9e-12
Identities = 44/199 (22%), Positives = 69/199 (34%), Gaps = 80/199 (40%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
+ G TGAGK+SLL+ + +E S G+IK R+S Q+ + GT
Sbjct: 68 AVAGSTGAGKTSLLMMIMGELEPSEGKIKH-------------SGRISFCSQNSWIMPGT 114
Query: 586 IRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQ----GDQ---------LSL 632
I+ N+ G +D + + V +L+ D+ D LS
Sbjct: 115 IKENI--IGVSYDEYRYRS----------VIKACQLEEDISKFAEKDNIVLGEGGITLSG 162
Query: 633 GEKQLLCLARAL----------------------------LRKTKKKKKSGVNITRP-VT 663
G++ + LARA+ + K K TR VT
Sbjct: 163 GQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK------TRILVT 216
Query: 664 -------SCDKVLVMDNGQ 675
DK+L++ G
Sbjct: 217 SKMEHLKKADKILILHEGS 235
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 71.5 bits (176), Expect = 8e-14
Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+ + + +L +S++I G+ + G GAGK++LL L +SG +
Sbjct: 22 IQLDQIGRMKQGKT--ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVN 79
Query: 497 IDDFDIASV--ELETLRSRLSVIPQD 520
+ V ET+R + +
Sbjct: 80 LFGKMPGKVGYSAETVRQHIGFVSHS 105
Score = 56.5 bits (137), Expect = 6e-09
Identities = 30/135 (22%), Positives = 49/135 (36%), Gaps = 25/135 (18%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV--ELETLRSRLSVIPQDPVLFN 583
+ G GAGK++LL L +SG + + V ET+R + +
Sbjct: 51 ILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHS----- 105
Query: 584 GTIRYNLDPFGRCHDT---------ELWDALEKSHLKS-----KVVTMRSKLDSDVQGDQ 629
+ R D ++ ++ K+V M +K +
Sbjct: 106 --LLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIG--Y 161
Query: 630 LSLGEKQLLCLARAL 644
LS GEKQ + +ARAL
Sbjct: 162 LSTGEKQRVMIARAL 176
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 71.0 bits (175), Expect = 9e-14
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+K + ++ Y D L ++ I GE I+G G GKS+L +++ SSG+I
Sbjct: 8 LKVEELNYNYSDGTH-ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL 66
Query: 497 IDDFDIASVE--LETLRSRLSVIPQDP 521
D+ I + LR + ++ QDP
Sbjct: 67 FDNKPIDYSRKGIMKLRESIGIVFQDP 93
Score = 43.7 bits (104), Expect = 1e-04
Identities = 38/195 (19%), Positives = 71/195 (36%), Gaps = 52/195 (26%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE--LETLRSRLSVIPQDPV- 580
I+G G GKS+L +++ SSG+I D+ I + LR + ++ QDP
Sbjct: 36 VTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDN 95
Query: 581 -LFNGTIR-------YNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSL 632
LF+ ++ N+ + E+ ++ + K + D LS
Sbjct: 96 QLFSASVYQDVSFGAVNMK----LPEDEIRKRVDNA---LKRTGIEHLKDKPTH--CLSF 146
Query: 633 GEKQLLCLA-----------------------RALLRKTKKKKKSGVNITRPVTS----- 664
G+K+ + +A + + K + + + IT + +
Sbjct: 147 GQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDI 206
Query: 665 ----CDKVLVMDNGQ 675
CD V VM G+
Sbjct: 207 VPLYCDNVFVMKEGR 221
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 70.7 bits (174), Expect = 1e-13
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 437 IKFKNVSLRYRDNWPL---VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493
I+ NVS + PL L NVS IN GE + + G TG+GKS+LL + L+E +SG
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 494 QIKIDDFDIASVELETLRSRLSVIPQDP 521
+ D + +R + + Q P
Sbjct: 63 DVLYDGERK---KGYEIRRNIGIAFQYP 87
Score = 44.5 bits (106), Expect = 5e-05
Identities = 38/196 (19%), Positives = 66/196 (33%), Gaps = 59/196 (30%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV--L 581
+ G TG+GKS+LL + L+E +SG + D + +R + + Q P
Sbjct: 35 CLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERK---KGYEIRRNIGIAFQYPEDQF 91
Query: 582 FNGTIR-------YNLDPFGRCHDTELW----DALEKSHLKSKVVTMRSKLDSDVQGDQL 630
F + N P D + A+E L R L
Sbjct: 92 FAERVFDEVAFAVKNFYP-----DRDPVPLVKKAMEFVGLDFDSFKDRVPFF-------L 139
Query: 631 SLGEKQLLCLA---------------------------RALLRKTKKKKKSGVNIT---- 659
S GEK+ + +A ++ K K K+ + I+
Sbjct: 140 SGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE 199
Query: 660 RPVTSCDKVLVMDNGQ 675
+ D+V+V++ G+
Sbjct: 200 TVINHVDRVVVLEKGK 215
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 69.7 bits (171), Expect = 7e-13
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 437 IKFKNVSLRYRDNWPLVLA--NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
IK N++ + + A NVS + G+ G++G +GAGKS+L+ + L + G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 495 IKIDDFDIASV---ELETLRSRLSVIPQDPVLFNGIVGRT 531
+ +D ++ ++ EL R ++ +I Q FN + RT
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQH---FNLLSSRT 121
Score = 51.9 bits (125), Expect = 3e-07
Identities = 46/201 (22%), Positives = 80/201 (39%), Gaps = 68/201 (33%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELETLRSRLSVIPQDPVLF 582
G++G +GAGKS+L+ + L + G + +D ++ ++ EL R ++ +I Q F
Sbjct: 58 GVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQH---F 114
Query: 583 N----GTIRYNLDPFGRCHDTELWDALEKSHLKSKV------VTMRSKLDSDVQGDQLSL 632
N T+ N+ EL + K +K +V V + K DS LS
Sbjct: 115 NLLSSRTVFGNV-----ALPLELDN-TPKDEVKRRVTELLSLVGLGDKHDSYP--SNLSG 166
Query: 633 GEKQLLCLARAL---------------------------LRKTKKKKKSGVNIT------ 659
G+KQ + +ARAL L+ ++ + +T
Sbjct: 167 GQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRR----LGLTILLITH 222
Query: 660 -----RPVTSCDKVLVMDNGQ 675
+ + CD V V+ NG+
Sbjct: 223 EMDVVKRI--CDCVAVISNGE 241
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 62.6 bits (153), Expect = 5e-11
Identities = 39/214 (18%), Positives = 72/214 (33%), Gaps = 81/214 (37%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+ +N+ Y + ++F +N G+ + ++G+ G GKS+LL L + G+I+
Sbjct: 5 LSVENLGFYY-QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE 63
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKID 556
+ + +PQ
Sbjct: 64 VY-------------QSIGFVPQFFSS--------------------------------- 77
Query: 557 DFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGR--CHDTEL-WDALEK---SHL 610
F SV D VL G + ++ F + HD ++ AL+ +HL
Sbjct: 78 PFAY-SVL-------------DIVLM-GRSTH-INTFAKPKSHDYQVAMQALDYLNLTHL 121
Query: 611 KSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARAL 644
+ LS G++QL+ +ARA+
Sbjct: 122 AKREF------------TSLSGGQRQLILIARAI 143
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 61.8 bits (151), Expect = 5e-11
Identities = 18/89 (20%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ +++S+ Y D VL ++ I G + G G GK++LL + ++ G+I
Sbjct: 11 LEIRDLSVGY-DK--PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 67
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFN 525
+ I V + ++ +P++ ++
Sbjct: 68 YNGVPITKV-----KGKIFFLPEEIIVPR 91
Score = 61.0 bits (149), Expect = 1e-10
Identities = 29/187 (15%), Positives = 60/187 (32%), Gaps = 55/187 (29%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG- 584
G G GK++LL + ++ G+I + I V + ++ +P++ ++
Sbjct: 39 NFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKV-----KGKIFFLPEEIIVPRKI 93
Query: 585 TIRYNLDPFGRCHD--------TELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQ 636
++ L + + +++E LK K+ +LS G +
Sbjct: 94 SVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKL-------------GELSQGTIR 140
Query: 637 LLCLARALL---------------------------RKTKKKKKSGVNITRPVTS-CDKV 668
+ LA LL + K+K + +R S CD
Sbjct: 141 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVN 200
Query: 669 LVMDNGQ 675
+
Sbjct: 201 ENLHKYS 207
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 62.2 bits (152), Expect = 6e-11
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRS 512
L +S + GE + +VG GAGKS+LL + + G I+ + + L
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATKLAL 73
Query: 513 RLSVIPQDPVL 523
+ + Q
Sbjct: 74 HRAYLSQQQTP 84
Score = 56.0 bits (136), Expect = 6e-09
Identities = 30/124 (24%), Positives = 45/124 (36%), Gaps = 15/124 (12%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL-FNG 584
+VG GAGKS+LL + + G I+ + + L + + Q F
Sbjct: 30 HLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFAT 88
Query: 585 TIRYNLDPFGRC--HDTEL-WDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLA 641
+ + + TEL D L KL +QLS GE Q + LA
Sbjct: 89 PVW-HYLTLHQHDKTRTELLNDVAGALAL-------DDKLGRST--NQLSGGEWQRVRLA 138
Query: 642 RALL 645
+L
Sbjct: 139 AVVL 142
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 63.3 bits (153), Expect = 2e-10
Identities = 68/378 (17%), Positives = 121/378 (32%), Gaps = 93/378 (24%)
Query: 302 IIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIAMAIITGLTVAFHG 361
I+ VF E FV F + ++ L ID + +++ ++G F
Sbjct: 21 ILSVF--EDAFVDNFDCKDVQDMPKSILSKE-------EIDHI-IMSKDAVSGTLRLF-- 68
Query: 362 SVSPALAGLALTYASHVTGLLQFTVRVFVETEL----NFLAVERINNCSKKLVPEGRGPI 417
L+ + V+ FVE L FL I K +
Sbjct: 69 -------WTLLSKQEEM-------VQKFVEEVLRINYKFLM-SPI-----KTEQRQPSMM 108
Query: 418 TSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGK 477
T + + + +L + Q K+ NVS R L L + +N+ I G G+GK
Sbjct: 109 TRMYIEQRDRLYNDN-QVFAKY-NVS---RLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163
Query: 478 SSL--LVALFRLVE---------LSSGQIKIDDFDIASVELETL--------RSRLSVIP 518
+ + V L V+ L+ + + L+ L SR
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE--MLQKLLYQIDPNWTSRSDHSS 221
Query: 519 QDPVLFNGIVGR------TGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 572
+ + I + ++ LLV L+ + + + + F+++ L T R +
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLV----LLNVQNAKA-WNAFNLSCKILLTTRFK- 275
Query: 573 SVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLK---SKVVTMR-SKLDSDVQGD 628
V D + T +LD L +K K + R L +V
Sbjct: 276 QVT--DFLSAATTTHISLD--------HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT- 324
Query: 629 QLSLGEKQLLCLARALLR 646
+ L + +R
Sbjct: 325 ----TNPRRLSIIAESIR 338
Score = 44.1 bits (103), Expect = 2e-04
Identities = 33/200 (16%), Positives = 65/200 (32%), Gaps = 43/200 (21%)
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVE--LSSGQIK 554
+D+FD V+ + +S LS D ++ + RL LS +
Sbjct: 30 VDNFDCKDVQ-DMPKSILSKEEIDHII----------MSKDAVSGTLRLFWTLLSKQEEM 78
Query: 555 IDDF--DIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELW---DALEKSH 609
+ F ++ + + L S + + P + T Y D L+ K +
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTEQRQPSM--MTRMYI-----EQRD-RLYNDNQVFAKYN 130
Query: 610 L--KSKVVTMRSKLDSDVQGDQLSL------GEKQLLCLARALLRKTKKKKKSGVNI--- 658
+ + +R L + + G K +A + K + K I
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSG-KT--WVALDVCLSYKVQCKMDFKIFWL 187
Query: 659 TRPVTSCDKV-LVMDNGQAL 677
+ +C+ V++ Q L
Sbjct: 188 N--LKNCNSPETVLEMLQKL 205
Score = 33.3 bits (75), Expect = 0.30
Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 24/91 (26%)
Query: 26 YHLIS-------KVFRSVYLRSVIQNMWSMLFAFL---MICFVFPWFALPLLIITTLYHL 75
+HL + +FR V+L F FL + W A I+ TL L
Sbjct: 479 HHLKNIEHPERMTLFRMVFLD----------FRFLEQKIRHDSTAWNA-SGSILNTLQQL 527
Query: 76 ISKVFRSVYLRSTDEVFQNMWSMLFAFLMIC 106
K ++ Y+ D ++ + + + FL
Sbjct: 528 --KFYKP-YICDNDPKYERLVNAILDFLPKI 555
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 59.6 bits (145), Expect = 2e-09
Identities = 41/217 (18%), Positives = 68/217 (31%), Gaps = 74/217 (34%)
Query: 440 KNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 499
++ RY N VL + G +GIVG G GK++ + L +GQ+ +
Sbjct: 95 EDCVHRYGVNA-FVL-YRLPIVKDGMVVGIVGPNGTGKTTAVKIL-------AGQLIPNL 145
Query: 500 FDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559
+ S I F
Sbjct: 146 CEDN---------------------------------------------DSWDNVIRAFR 160
Query: 560 IASVELETLRSR---LSVIPQ------DPVLFNGTIRYNLDPFGRCHDTELWDALEKSHL 610
++ R + + + + P G +R L + D + K
Sbjct: 161 GNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELL---------KKVDEVGKFEE 211
Query: 611 KSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRK 647
K + + + LD ++ QLS GE Q + +A ALLRK
Sbjct: 212 VVKELELENVLDREL--HQLSGGELQRVAIAAALLRK 246
Score = 50.4 bits (121), Expect = 2e-06
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+++ + Y L I GE IGIVG G GK++ + L + E + G+++
Sbjct: 358 VEYPRLVKDYGSF---KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVE 414
Query: 497 ID 498
D
Sbjct: 415 WD 416
Score = 49.2 bits (118), Expect = 4e-06
Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 30/128 (23%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
GIVG G GK++ + L + E + G+++ D L+V +
Sbjct: 386 GIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD---------------LTVAYKPQ------ 424
Query: 586 IRYNLDPFGRCHD---TELWDALEKSHLKSKV---VTMRSKLDSDVQGDQLSLGEKQLLC 639
+ G ++ L + K+++ + + D +V+ LS GE Q +
Sbjct: 425 -YIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVE--DLSGGELQRVA 481
Query: 640 LARALLRK 647
+A LLR
Sbjct: 482 IAATLLRD 489
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 57.7 bits (140), Expect = 2e-09
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 437 IKFKNVSLRYRDNWPLVLA--NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
I+ KNV + + N++ +N GE + I+G G+GK++LL A+ L+ SG
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLP-YSGN 59
Query: 495 IKIDDFDIASVELETLRSRLSVIPQDPVLF 524
I I+ ++ +R+ + P +
Sbjct: 60 IFINGMEVRK-----IRNYIRYSTNLPEAY 84
Score = 41.6 bits (98), Expect = 4e-04
Identities = 28/155 (18%), Positives = 58/155 (37%), Gaps = 39/155 (25%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF- 582
I+G G+GK++LL A+ L+ SG I I+ ++ +R+ + P +
Sbjct: 32 KVIILGPNGSGKTTLLRAISGLLP-YSGNIFINGMEVRK-----IRNYIRYSTNLPEAYE 85
Query: 583 -NGTIRYN----LDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQL 637
T+ + G D + L+ L ++ + +LS G+ L
Sbjct: 86 IGVTVNDIVYLYEELKGLDRD-LFLEMLKALKLGEEI--------LRRKLYKLSAGQSVL 136
Query: 638 LCLARALLRKTKKKKKSGVNITRPVTSCDKVLVMD 672
+ + AL ++P +++ +D
Sbjct: 137 VRTSLAL-------------ASQP-----EIVGLD 153
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 57.2 bits (139), Expect = 3e-09
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+ K++ R +L +SF I GE G++G GAGK++ L + L++ SSG +
Sbjct: 16 VVVKDLRKRIGKK--EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT 73
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLF 524
+ ++ E +R +S +P++ +
Sbjct: 74 VFGKNVVE-EPHEVRKLISYLPEEAGAY 100
Score = 56.8 bits (138), Expect = 4e-09
Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 16/127 (12%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNG- 584
G++G GAGK++ L + L++ SSG + + ++ E +R +S +P++ +
Sbjct: 45 GLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLISYLPEEAGAYRNM 103
Query: 585 TIRYNLDPFGRCHDTELWDALEKSHLKSKV------VTMRSKLDSDVQGDQLSLGEKQLL 638
L + S ++ V + K+ V S G + L
Sbjct: 104 QGIEYLRFVAGFYA------SSSSEIEEMVERATEIAGLGEKIKDRV--STYSKGMVRKL 155
Query: 639 CLARALL 645
+ARAL+
Sbjct: 156 LIARALM 162
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 57.0 bits (138), Expect = 1e-08
Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 8/118 (6%)
Query: 391 ETELNFLAVERINNCSKKLVPEG-----RGPITSEFGQVKVKLADWPRQGTIKFKNVSLR 445
++ A INN K +P I +V + +K+ + +
Sbjct: 219 RVSKSYAARVGINNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKK 278
Query: 446 YRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA 503
D L + GE IGI+G G GK++ L + G + + ++
Sbjct: 279 LGDF---QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILS 333
Score = 48.5 bits (116), Expect = 5e-06
Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 16/122 (13%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
GI+G G GK++ L + G + + + + I + +GT
Sbjct: 298 GILGPNGIGKTTFARILVGEITADEGSVTPEKQIL--------SYKPQRIFPNY---DGT 346
Query: 586 IRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALL 645
++ L + +K + + L+S+V LS GE Q L +A L
Sbjct: 347 VQ---QYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVN--DLSGGELQKLYIAATLA 401
Query: 646 RK 647
++
Sbjct: 402 KE 403
Score = 45.4 bits (108), Expect = 5e-05
Identities = 36/218 (16%), Positives = 69/218 (31%), Gaps = 70/218 (32%)
Query: 440 KNVSLRYRDNWPLVLANVSFRI-NHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKID 498
V RY+ N + +G++G+ G GK+++L L +G+I +
Sbjct: 3 GEVIHRYKVN---GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKIL-------AGEIIPN 52
Query: 499 --DFDIASVELETLR----SRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQ 552
D + + E L+ + ++ S+ L + +
Sbjct: 53 FGDPNSKVGKDEVLKRFRGKEIYNYFKELY-------------SNELKIVH--------K 91
Query: 553 IKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPF-GRCHDTELWDALEKSHLK 611
I+ + GT+ L R E+ + L ++L
Sbjct: 92 IQYVE-------------------YASKFLKGTVNEILTKIDERGKKDEVKELLNMTNL- 131
Query: 612 SKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTK 649
+ D + LS G Q L +A +LLR+
Sbjct: 132 ---------WNKDA--NILSGGGLQRLLVAASLLREAD 158
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 55.2 bits (134), Expect = 1e-08
Identities = 15/69 (21%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 438 KFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKI 497
+ +++ + Y + + ++ G+ + ++G GAGK++ L A+ LV G+I
Sbjct: 8 EVQSLHVYY--GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65
Query: 498 DDFDIASVE 506
+ DI +
Sbjct: 66 NGQDITNKP 74
Score = 48.2 bits (116), Expect = 3e-06
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 12/124 (9%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL-RSRLSVIPQDPVLFNG- 584
++G GAGK++ L A+ LV G+I + DI + + R ++++P+ +F
Sbjct: 37 LIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPEL 96
Query: 585 TIRYNLD--PFGRCHDTELWDALEKSHLKSKVVTM--RSKLDSDVQGDQLSLGEKQLLCL 640
T+ NL + R + LE + ++ R K G LS GE+Q+L +
Sbjct: 97 TVYENLMMGAYNRKDKEGIKRDLE------WIFSLFPRLKERLKQLGGTLSGGEQQMLAI 150
Query: 641 ARAL 644
RAL
Sbjct: 151 GRAL 154
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 55.0 bits (133), Expect = 5e-08
Identities = 39/219 (17%), Positives = 63/219 (28%), Gaps = 74/219 (33%)
Query: 440 KNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 499
++ RY N VL + G +GIVG G GKS+ + L +GQ+
Sbjct: 25 EDCVHRYGVN-AFVL-YRLPVVKEGMVVGIVGPNGTGKSTAVKIL-------AGQLI--- 72
Query: 500 FDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559
P L S I F
Sbjct: 73 ---------------------PNLCGDND---------------------SWDGVIRAFR 90
Query: 560 IASVELETLRSR---LSVIPQ------DPVLFNGTIRYNLDPFGRCHDTELWDALEKSHL 610
++ + + + + + P G + L D K
Sbjct: 91 GNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKK---------ADETGKLEE 141
Query: 611 KSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLRKTK 649
K + + + L+ ++ LS GE Q + +A ALLR
Sbjct: 142 VVKALELENVLEREI--QHLSGGELQRVAIAAALLRNAT 178
Score = 50.0 bits (120), Expect = 2e-06
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+ + + Y L I GE IGIVG G GK++ + L + E + G+I+
Sbjct: 288 VTYPRLVKDYGSF---RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIE 344
Query: 497 ID 498
D
Sbjct: 345 WD 346
Score = 47.3 bits (113), Expect = 1e-05
Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 30/128 (23%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
GIVG G GK++ + L + E + G+I+ D L+V +
Sbjct: 316 GIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD---------------LTVAYKPQ------ 354
Query: 586 IRYNLDPFGRCHD--TEL-WDALEKSHLKSKV---VTMRSKLDSDVQGDQLSLGEKQLLC 639
D G ++ +++ L + K+++ + + D +V +LS GE Q +
Sbjct: 355 -YIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVN--ELSGGELQRVA 411
Query: 640 LARALLRK 647
+A LLR
Sbjct: 412 IAATLLRD 419
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 54.6 bits (132), Expect = 7e-08
Identities = 33/185 (17%), Positives = 61/185 (32%), Gaps = 54/185 (29%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPV--LFN 583
++G G GK++L+ L ++ GQ I +++ +++ V LF
Sbjct: 382 VMMGENGTGKTTLIKLLAGALKPDEGQD-IPKLNVSMK-----PQKIAPKFPGTVRQLFF 435
Query: 584 GTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARA 643
IR G+ + + + K + + +D +VQ LS GE Q + + A
Sbjct: 436 KKIR------GQFLNPQFQTDVVKP------LRIDDIIDQEVQ--HLSGGELQRVAIVLA 481
Query: 644 LLRK----------------------------TKKKKKSGVNIT---RPVTS-CDKVLVM 671
L KK+ + T DKV+V
Sbjct: 482 LGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVF 541
Query: 672 DNGQA 676
+ +
Sbjct: 542 EGIPS 546
Score = 51.6 bits (124), Expect = 7e-07
Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 7/91 (7%)
Query: 432 PRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELS 491
+ F SL+ VL + E + ++G G GK++L+ L ++
Sbjct: 347 NDSASRAFSYPSLKKTQG-DFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD 405
Query: 492 SGQIKIDDFDIASVELETLRSRLSVIPQDPV 522
GQ I +++ +++ V
Sbjct: 406 EGQD-IPKLNVSMK-----PQKIAPKFPGTV 430
Score = 47.3 bits (113), Expect = 1e-05
Identities = 33/210 (15%), Positives = 69/210 (32%), Gaps = 49/210 (23%)
Query: 440 KNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 499
+V+ RY N + G+ +G+VG G GKS+ L L +G+ K +
Sbjct: 81 AHVTHRYSAN--SFKLHRLPTPRPGQVLGLVGTNGIGKSTALKIL-------AGKQKPNL 131
Query: 500 FDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 559
+ ++ FR EL + K+ + D
Sbjct: 132 GRF----------------------------DDPPEWQEIIKYFRGSELQNYFTKMLEDD 163
Query: 560 IASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRS 619
I ++ + + P G ++ + + D + + + +
Sbjct: 164 IKAI------IKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKI----LQLEN 213
Query: 620 KLDSDVQGDQLSLGEKQLLCLARALLRKTK 649
L D+ ++LS GE Q + + +++
Sbjct: 214 VLKRDI--EKLSGGELQRFAIGMSCVQEAD 241
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 53.0 bits (128), Expect = 9e-08
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I + + VL ++ I GE + ++G +G+GKS+ L L L + G+I
Sbjct: 25 IDVHQLKKSFGSLE--VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEII 82
Query: 497 IDDFDIAS--VELETLRSRL 514
ID ++ + L +R +
Sbjct: 83 IDGINLKAKDTNLNKVREEV 102
Score = 37.6 bits (88), Expect = 0.010
Identities = 33/137 (24%), Positives = 55/137 (40%), Gaps = 36/137 (26%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS--VELETLRSRLSVIPQDPVLFNG 584
++G +G+GKS+ L L L + G+I ID ++ + L +R + ++ Q
Sbjct: 55 VIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQ------- 107
Query: 585 TIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQG----------------- 627
R+NL P H T L L V + ++ +
Sbjct: 108 --RFNLFP----HMT----VLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYP 157
Query: 628 DQLSLGEKQLLCLARAL 644
D LS G+ Q + +ARAL
Sbjct: 158 DSLSGGQAQRVAIARAL 174
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 54.3 bits (130), Expect = 1e-07
Identities = 30/175 (17%), Positives = 70/175 (40%), Gaps = 7/175 (4%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+K N+ +Y + +++F+ + I ++G GAGKS+L+ L + +SG++
Sbjct: 672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 731
Query: 497 I-DDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQI-K 554
++ IA ++ S + + P + +TG + ++ A ++ E + + K
Sbjct: 732 THENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNK 791
Query: 555 IDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSH 609
I + + + SR + + N+ +E W +
Sbjct: 792 IFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENI-----GMKSERWVPMMSVD 841
Score = 47.7 bits (113), Expect = 1e-05
Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+ SL Y +L R+ GI G G GKS+L+ A+ G
Sbjct: 436 LCNCEFSLAYGAKI--LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--GQVDGFPT 491
Query: 497 IDDFDIASV--ELETLRSRLSVI 517
++ V +++ S SV+
Sbjct: 492 QEECRTVYVEHDIDGTHSDTSVL 514
Score = 35.0 bits (80), Expect = 0.097
Identities = 30/127 (23%), Positives = 42/127 (33%), Gaps = 30/127 (23%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE-----LETLRSRLSVIPQDPV 580
GI G G GKS+L+ A+ G ++ VE + S L + + V
Sbjct: 465 GICGPNGCGKSTLMRAIAN--GQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGV 522
Query: 581 LFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCL 640
I+ L FG + + LS G K L L
Sbjct: 523 GTKEAIKDKLIEFG----------FTDEMIAMPI-------------SALSGGWKMKLAL 559
Query: 641 ARALLRK 647
ARA+LR
Sbjct: 560 ARAVLRN 566
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 51.0 bits (123), Expect = 3e-07
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ +N+ R +L +S + GE + I+G +G+GKS+LL L L + G++
Sbjct: 5 LRAENIKKVIRGYE--ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVF 62
Query: 497 IDDFDIASV---ELETLRSR 513
++ ++ EL LR+R
Sbjct: 63 LEGKEVDYTNEKELSLLRNR 82
Score = 31.3 bits (72), Expect = 0.85
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELETLRSR 571
I+G +G+GKS+LL L L + G++ ++ ++ EL LR+R
Sbjct: 35 IIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNR 82
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.7 bits (126), Expect = 3e-07
Identities = 75/487 (15%), Positives = 149/487 (30%), Gaps = 157/487 (32%)
Query: 257 LLIITTLYHLISKVFRIAVRE--LKRMENVSRSPIFSNVSSTVSGL------HIIHVFHK 308
LL+ T + + S++ +E K + + + +T + L ++ +
Sbjct: 20 LLVPTASFFIASQL-----QEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEP 74
Query: 309 EQ-------------DFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVIAMAIITGL 355
+ +F + E D ++ L L +++ A I
Sbjct: 75 SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAK 134
Query: 356 TVAFHGSVSPAL-----AGLALTYASHVTGLLQF----TVRVFVETEL-------NFLAV 399
F + AL G A A F + E EL + L
Sbjct: 135 R-PFDKKSNSALFRAVGEGNAQLVA-------IFGGQGNTDDYFE-ELRDLYQTYHVLVG 185
Query: 400 ERINNCSKKLVPEGRGPITSE--FGQVKVKLADW-------PRQGTIKFKNVSLRYRDNW 450
+ I ++ L R + +E F Q + + +W P + + +S
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQG-LNILEWLENPSNTPDKDYLLSIPIS------C 238
Query: 451 PLV----LAN--VSFRI---NHGENIGIV-GRTGAGKSSLLVALFRLVELSSGQIKIDDF 500
PL+ LA+ V+ ++ GE + G TG + L+ A+ + + + F
Sbjct: 239 PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG-LVTAVA--IAETDS---WESF 292
Query: 501 DIASVE-LETL-----RS-----RLSVIP---QDPVLFNGIVGRTGAGKSS--LLV---- 540
++ + + L R S+ P +D + G S L +
Sbjct: 293 FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL-------ENNEGVPSPMLSISNLT 345
Query: 541 --ALFRLVEL------SSGQIKI------DDFDIAS--VELETLRSRL------SVIPQD 578
+ V + Q++I + ++ L L L S + Q
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS 405
Query: 579 PVLF-----NGTIRYNLD---PFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQL 630
+ F + R+ L PF H L A + ++ D+ + +
Sbjct: 406 RIPFSERKLKFSNRF-LPVASPF---HSHLLVPASDL-------------INKDLVKNNV 448
Query: 631 SLGEKQL 637
S K +
Sbjct: 449 SFNAKDI 455
Score = 50.0 bits (119), Expect = 3e-06
Identities = 88/549 (16%), Positives = 140/549 (25%), Gaps = 229/549 (41%)
Query: 80 FRSVYLRSTDEVFQNMWSMLFAFLMI-CFVFPWFALPLLIITTL---YHLISKVFRSVYL 135
F + YL D I L TTL LI + +
Sbjct: 91 FENCYLEGND---------------IHALA---AKLLQENDTTLVKTKELIKNYITARIM 132
Query: 136 --RSVFQNMWSMLF-------AFLMICF------------------VFPWFALPLL--II 166
R + S LF A L+ F + L+
Sbjct: 133 AKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSA 192
Query: 167 TTLYHLISKV--FRSVYLRSVFQNMWSML--------FAFLMICFVFPWFALPLLIITTL 216
TL LI V+ + + W L +L+ + + PL+ + L
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNILEW--LENPSNTPDKDYLLSIPI----SCPLIGVIQL 246
Query: 217 YHLISKVFRSVY------LRSVFQNM------------------WSMLFA----FLMICF 248
H + V + LRS + W F + + F
Sbjct: 247 AHYV--VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF 304
Query: 249 --------VFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGL 300
+P +LP I+ L+ E V SP+ S +S L
Sbjct: 305 FIGVRCYEAYPNTSLPPSILED--------------SLENNEGVP-SPMLS-----ISNL 344
Query: 301 HIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRIDVLAVI---AMAIITGLTV 357
V QD+V + V I +++ +++G
Sbjct: 345 TQEQV----QDYVNKTNSHLPAGK-------------QVEI---SLVNGAKNLVVSG--- 381
Query: 358 AFHGSVSP-ALAGLALTYASHVTGLLQFTVRVFVETELNFLAVERINNCSKKLVPEGR-G 415
P +L GL LT L+ + + L+ RI +KL R
Sbjct: 382 ------PPQSLYGLNLT--------LR---KAKAPSGLD---QSRIPFSERKLKFSNRFL 421
Query: 416 PITSEF-----GQVKVKLADWPRQGTIKFKNVSLR---Y-----RD-------------- 448
P+ S F + + + F ++ Y D
Sbjct: 422 PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVD 481
Query: 449 -------NWPLVLANVSFRINH------GENIGIVGRT-----GAGKSSLLVALFRLVEL 490
W F+ H G G+ T G G R++
Sbjct: 482 CIIRLPVKWE---TTTQFKATHILDFGPGGASGLGVLTHRNKDGTG--------VRVIVA 530
Query: 491 SSGQIKIDD 499
+ I DD
Sbjct: 531 GTLDINPDD 539
Score = 40.0 bits (93), Expect = 0.003
Identities = 51/272 (18%), Positives = 90/272 (33%), Gaps = 84/272 (30%)
Query: 432 PRQGTIKFKNVSLRY-RDNWPLVL-------ANVSFRINHGENIGIVGRTGAGKSSLL-- 481
P TI F + R+N+ ++ + +I N T + LL
Sbjct: 1669 PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA 1728
Query: 482 -----VALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKS 536
AL L+E ++ E L+S+ +IP D AG S
Sbjct: 1729 TQFTQPALT-LMEKAA--------------FEDLKSK-GLIPADATF---------AGHS 1763
Query: 537 ----SLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL--SVIPQDPVLFNGTIRY-- 588
+ L +L + + I+ VE+ R +P+D + G Y
Sbjct: 1764 LGEYAALASL-------ADVMSIES----LVEVVFYRGMTMQVAVPRDEL---GRSNYGM 1809
Query: 589 -NLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--------QGDQLSL-GEKQLL 638
++P GR + +AL+ VV K + + Q G+ + L
Sbjct: 1810 IAINP-GRVAASFSQEALQY------VVERVGKRTGWLVEIVNYNVENQQYVAAGDLRAL 1862
Query: 639 CLARALLRKTKKKKKSGVNITR-PVT-SCDKV 668
+L K +K ++I + S ++V
Sbjct: 1863 DTVTNVLNFIKLQK---IDIIELQKSLSLEEV 1891
Score = 33.9 bits (77), Expect = 0.22
Identities = 26/164 (15%), Positives = 48/164 (29%), Gaps = 51/164 (31%)
Query: 500 FDIASVEL-ETLR-SRLSVIPQDP----VLFNGIVGRTGAGKSSLLVALFRLVELSSGQI 553
++ A +T S L ++ +P + F G G+ R+ E S +
Sbjct: 1646 WNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGK-------------RIRENYSA-M 1691
Query: 554 KIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTE------------L 601
+ ++ E + ++ F G T+
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHSTS-YTFRS-------EKGLLSATQFTQPALTLMEKAA 1743
Query: 602 WDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGE-KQLLCLARAL 644
++ L+ L D+ G SLGE L LA +
Sbjct: 1744 FEDLKSKGLI--------PADATFAG--HSLGEYAALASLADVM 1777
Score = 30.4 bits (68), Expect = 2.3
Identities = 29/188 (15%), Positives = 57/188 (30%), Gaps = 54/188 (28%)
Query: 442 VSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLV--ALFRLVELSSGQIKIDD 499
S R PL L++ S LLV A F + Q++ +
Sbjct: 4 YSTR-----PLTLSHGSLEH-----------------VLLVPTASFFIAS----QLQ-EQ 36
Query: 500 FDIASVELETLRSRLSVIPQDPV-L---FNG-IVGRTGAGKSSLLVALFRLVELSSGQIK 554
F + T P P L F G + K + L
Sbjct: 37 F-NKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLC-------- 87
Query: 555 IDDFD---IASVELETLRSRLSVIPQDPVL-FNGTIR--YNL-----DPFGRCHDTELWD 603
+ +F+ + ++ L ++L ++ I+ PF + ++ L+
Sbjct: 88 LTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFR 147
Query: 604 ALEKSHLK 611
A+ + + +
Sbjct: 148 AVGEGNAQ 155
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 50.3 bits (121), Expect = 1e-06
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
I KNVS ++ + L NV+ I +GE GI+G +GAGK++ + + L S+G++
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 496 KIDDFDIASVELETL 510
DD +AS +
Sbjct: 63 YFDDRLVASNGKLIV 77
Score = 30.3 bits (69), Expect = 1.8
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL 568
GI+G +GAGK++ + + L S+G++ DD +AS +
Sbjct: 33 RFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIV 77
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 49.1 bits (118), Expect = 1e-06
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 437 IKFKNVSLRYR--DNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
+K KNV+ Y+ + L NV+ I GE + I+G +G+GKS++L + L + + G+
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 495 IKIDDFDIASV---ELETLRSR 513
+ ID+ + EL +R
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRD 83
Score = 28.7 bits (65), Expect = 5.9
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELETLRSR 571
I+G +G+GKS++L + L + + G++ ID+ + EL +R
Sbjct: 36 IMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRD 83
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 45.6 bits (109), Expect = 2e-05
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+ ++ RY + VL VS + G+ I I+G +G+GKS+ L + L + S G I
Sbjct: 7 LHVIDLHKRYGGH--EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 64
Query: 497 IDDFDI 502
++ +I
Sbjct: 65 VNGQNI 70
Score = 32.5 bits (75), Expect = 0.34
Identities = 35/146 (23%), Positives = 58/146 (39%), Gaps = 42/146 (28%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIA-------------SVELETLRSRLS 573
I+G +G+GKS+ L + L + S G I ++ +I +L LR+RL+
Sbjct: 37 IIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLT 96
Query: 574 VIPQDPVLFNGTIRYNLDPFGRCHDTEL---------------WDALEKSHLKSKVVTMR 618
++ Q +NL H T L DA E++ V +
Sbjct: 97 MVFQ---------HFNLWS----HMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGID 143
Query: 619 SKLDSDVQGDQLSLGEKQLLCLARAL 644
+ LS G++Q + +ARAL
Sbjct: 144 ERAQGKYPV-HLSGGQQQRVSIARAL 168
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 46.0 bits (110), Expect = 2e-05
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 11/73 (15%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV----ELSS 492
I+ +++S ++++ L N+S ++ GE I+G TGAGK+ L L+ S
Sbjct: 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFL----ELIAGFHVPDS 54
Query: 493 GQIKIDDFDIASV 505
G+I +D D+ +
Sbjct: 55 GRILLDGKDVTDL 67
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 44.9 bits (107), Expect = 6e-05
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
TI+F V Y + VSF+I GE +G++G +G+GK+++L + L + G +
Sbjct: 14 TIEFVGVEKIYPGGAR-SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 496 KIDDFDIASV 505
I + +
Sbjct: 73 WIGGKRVTDL 82
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 44.5 bits (106), Expect = 7e-05
Identities = 20/71 (28%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
IK +N+ ++ + L N++ +I GE + ++G +G+GKS+LL + + + +SG+I
Sbjct: 3 EIKLENIVKKFGNFT--ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKI 60
Query: 496 KIDDFDIASVE 506
D+ D+ +
Sbjct: 61 YFDEKDVTELP 71
Score = 29.5 bits (67), Expect = 3.8
Identities = 12/38 (31%), Positives = 25/38 (65%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE 564
++G +G+GKS+LL + + + +SG+I D+ D+ +
Sbjct: 34 LLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELP 71
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 43.7 bits (104), Expect = 1e-04
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+ ++S +++ VL ++S ++ GE + I+G +G GK++LL L + SG+I
Sbjct: 5 LHIGHLSKSFQNT--PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEIS 62
Query: 497 IDDFDIAS 504
+ I S
Sbjct: 63 LSGKTIFS 70
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 43.8 bits (104), Expect = 1e-04
Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
+K +N++ R+ + + ++ I GE + ++G +G GK++ L + L E + G+I
Sbjct: 11 EVKLENLTKRFGNF--TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 68
Query: 496 KIDDFDIASVE 506
D D+ +
Sbjct: 69 YFGDRDVTYLP 79
Score = 29.5 bits (67), Expect = 3.9
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE 564
++G +G GK++ L + L E + G+I D D+ +
Sbjct: 42 LLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLP 79
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 43.7 bits (104), Expect = 1e-04
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 10/75 (13%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV----ELS 491
+I+ N+ + + VSF + GE + ++G +G GK++ L ++ + +
Sbjct: 3 SIRVVNLKKYFGKV--KAVDGVSFEVKDGEFVALLGPSGCGKTTTL----LMLAGIYKPT 56
Query: 492 SGQIKIDDFDIASVE 506
SG+I DD + +
Sbjct: 57 SGEIYFDDVLVNDIP 71
Score = 29.9 bits (68), Expect = 2.6
Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 8/42 (19%)
Query: 527 IVGRTGAGKSSLLVALFRLV----ELSSGQIKIDDFDIASVE 564
++G +G GK++ L ++ + +SG+I DD + +
Sbjct: 34 LLGPSGCGKTTTL----LMLAGIYKPTSGEIYFDDVLVNDIP 71
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 43.4 bits (103), Expect = 2e-04
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQI 495
++ +V + + + +S + GE + ++G +G GK++ L + L E S GQI
Sbjct: 3 GVRLVDVWKVFGEV--TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 496 KIDD 499
I D
Sbjct: 61 YIGD 64
Score = 29.1 bits (66), Expect = 5.2
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDD 557
++G +G GK++ L + L E S GQI I D
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEEPSRGQIYIGD 64
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A*
3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Length = 381
Score = 42.9 bits (102), Expect = 2e-04
Identities = 18/68 (26%), Positives = 39/68 (57%), Gaps = 10/68 (14%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV----ELS 491
+++ +NV+ + + +V +++ I+ GE + VG +G GKS+LL R++ ++
Sbjct: 3 SVQLQNVTKAWGEV--VVSKDINLDIHEGEFVVFVGPSGCGKSTLL----RMIAGLETIT 56
Query: 492 SGQIKIDD 499
SG + I +
Sbjct: 57 SGDLFIGE 64
Score = 30.2 bits (69), Expect = 2.3
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 8/34 (23%)
Query: 528 VGRTGAGKSSLLVALFRLV----ELSSGQIKIDD 557
VG +G GKS+LL R++ ++SG + I +
Sbjct: 35 VGPSGCGKSTLL----RMIAGLETITSGDLFIGE 64
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATPase, exonuclease, endonucle binding,
DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB:
3qkr_A*
Length = 203
Score = 38.8 bits (91), Expect = 0.003
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 11/52 (21%)
Query: 524 FNGIVGRTGAGKSSLL----VALFRLVELSSGQIKIDDF-----DIASVELE 566
N I+G+ G+GKSSLL V L+ L IK D+F ++L
Sbjct: 25 INLIIGQNGSGKSSLLDAILVGLYW--PLRIKDIKKDEFTKVGARDTYIDLI 74
Score = 36.9 bits (86), Expect = 0.012
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 11/50 (22%)
Query: 468 GIVGRTGAGKSSLL----VALFRLVELSSGQIKIDDF-----DIASVELE 508
I+G+ G+GKSSLL V L+ L IK D+F ++L
Sbjct: 27 LIIGQNGSGKSSLLDAILVGLYW--PLRIKDIKKDEFTKVGARDTYIDLI 74
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A*
1us8_A*
Length = 149
Score = 37.0 bits (86), Expect = 0.005
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 11/52 (21%)
Query: 524 FNGIVGRTGAGKSSLL----VALFRLVELSSGQIKIDDF-----DIASVELE 566
N I+G+ G+GKSSLL V L+ L IK D+F ++L
Sbjct: 25 INLIIGQNGSGKSSLLDAILVGLYW--PLRIKDIKKDEFTKVGARDTYIDLI 74
Score = 35.0 bits (81), Expect = 0.029
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 11/50 (22%)
Query: 468 GIVGRTGAGKSSLL----VALFRLVELSSGQIKIDDF-----DIASVELE 508
I+G+ G+GKSSLL V L+ L IK D+F ++L
Sbjct: 27 LIIGQNGSGKSSLLDAILVGLYW--PLRIKDIKKDEFTKVGARDTYIDLI 74
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 38.1 bits (89), Expect = 0.007
Identities = 26/168 (15%), Positives = 58/168 (34%), Gaps = 26/168 (15%)
Query: 92 FQNMWSMLFAFLMICFVFPW-----FALPLLIITTLYHLISKVFRSVYLRSVFQNMWSML 146
Q S ++IC + W A P +T + S+V + ++ +
Sbjct: 138 LQPRLSATATKVVICVI--WVLALLLAFPQGYYSTTETMPSRVVCMIEWPEHPNKIYEKV 195
Query: 147 FAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWS-----------MLFA 195
+ + ++ LPLL+I Y ++ + + + + M+
Sbjct: 196 YHICVTVLIY---FLPLLVIGYAYTVVGITLWASEIPGDSSDRYHEQVSAKRKVVKMMIV 252
Query: 196 FLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAF 243
+ F W LP I L ++ ++ +++ V+ + M A
Sbjct: 253 VV-CTFAICW--LPFHIFFLLPYINPDLYLKKFIQQVY--LAIMWLAM 295
Score = 32.3 bits (74), Expect = 0.43
Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 10/89 (11%)
Query: 186 FQNMWSMLFAFLMICFVFPW-----FALPLLIITTLYHLISKVFRSVYLRSVFQNMWSML 240
Q S ++IC + W A P +T + S+V + ++ +
Sbjct: 138 LQPRLSATATKVVICVI--WVLALLLAFPQGYYSTTETMPSRVVCMIEWPEHPNKIYEKV 195
Query: 241 FAFLMICFVFPWFALPLLIITTLYHLISK 269
+ + ++ LPLL+I Y ++
Sbjct: 196 YHICVTVLIY---FLPLLVIGYAYTVVGI 221
Score = 29.6 bits (67), Expect = 3.2
Identities = 14/95 (14%), Positives = 31/95 (32%), Gaps = 15/95 (15%)
Query: 1 MLFAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVIQNMWS-----------ML 49
+ + V + LPLL+I Y ++ + + + + M+
Sbjct: 192 YEKVYHICVTVLI-YFLPLLVIGYAYTVVGITLWASEIPGDSSDRYHEQVSAKRKVVKMM 250
Query: 50 FAFLMICFVFPWFALPLLIITTLYHLISKVFRSVY 84
+ F W LP I L ++ ++ +
Sbjct: 251 IVVV-CTFAICW--LPFHIFFLLPYINPDLYLKKF 282
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 37.9 bits (89), Expect = 0.008
Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 20/105 (19%)
Query: 454 LANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIAS------VEL 507
L VS +N G+ I+G G+GKS+L+ + ++ G++ ++ DI +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 508 ETLR--------SRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFR 544
+R ++ VL N ++G G+S L ++
Sbjct: 83 GIVRTFQTPQPLKEMT------VLENLLIGEICPGESPLNSLFYK 121
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 38.1 bits (88), Expect = 0.009
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 466 NIGIVGRTGAGKSSLLVALFRLVELSSGQIKID 498
N+ + G TG+GKSS + L + G K
Sbjct: 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTG 103
Score = 37.0 bits (85), Expect = 0.020
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 506 ELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKID 556
+ L I + + G TG+GKSS + L + G K
Sbjct: 54 TNSAISDALKEIDSSVLNV-AVTGETGSGKSSFINTLRGIGNEEEGAAKTG 103
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 36.3 bits (84), Expect = 0.020
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 466 NIGIVGRTGAGKSSLLVALF 485
+ ++G+ G GKSS + +L
Sbjct: 38 TVLVLGKGGVGKSSTVNSLI 57
Score = 32.5 bits (74), Expect = 0.37
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 526 GIVGRTGAGKSSLLVALF 543
++G+ G GKSS + +L
Sbjct: 40 LVLGKGGVGKSSTVNSLI 57
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 36.4 bits (84), Expect = 0.030
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 524 FNGIVGRTGAGKSSLLVAL-FRLVELSSGQIKIDDF-----DIASVELE 566
I+G G+GKSS+ A+ F L S D VEL+
Sbjct: 27 IVAIIGENGSGKSSIFEAVFFALFGAGSN-FNYDTIITKGKKSVYVELD 74
Score = 35.2 bits (81), Expect = 0.065
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 12/79 (15%)
Query: 436 TIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVAL-FRLVELSSGQ 494
++ K + + N+ N + G I+G G+GKSS+ A+ F L S
Sbjct: 2 SMILKEIRMN---NF-KSHVNSRIKFEKGIV-AIIGENGSGKSSIFEAVFFALFGAGSN- 55
Query: 495 IKIDDF-----DIASVELE 508
D VEL+
Sbjct: 56 FNYDTIITKGKKSVYVELD 74
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 36.1 bits (82), Expect = 0.039
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 477 KSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIP---QDPVLFNGIVGRTGA 533
+S + V L +L E + D + LE +++ Q V ++G
Sbjct: 21 RSEMSVCLNKLAETINKAELAGDSSSGKLSLERDIEDITIASKNLQQGVFRLLVLGDMKR 80
Query: 534 GKSSLLVALFR 544
GKS+ L AL
Sbjct: 81 GKSTFLNALIG 91
Score = 31.9 bits (71), Expect = 0.91
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 454 LANVSFRINHGE-NIGIVGRTGAGKSSLLVALFR 486
+ S + G + ++G GKS+ L AL
Sbjct: 58 ITIASKNLQQGVFRLLVLGDMKRGKSTFLNALIG 91
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 35.9 bits (82), Expect = 0.048
Identities = 15/104 (14%), Positives = 30/104 (28%), Gaps = 16/104 (15%)
Query: 195 AFLMICFVFPWFALPLLI----------ITTLYHLISKVFRSVYLRSVFQNMWSMLFAFL 244
A +I W L I + + + ++
Sbjct: 136 AKGIIAIC--WV-LSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYM 192
Query: 245 MICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSP 288
+ F +PLL++ +Y ++F A R+L E +
Sbjct: 193 VYFNFFACVLVPLLLMLGVY---LRIFLAARRQLNIFEMLRIDE 233
Score = 31.6 bits (71), Expect = 0.94
Identities = 13/86 (15%), Positives = 23/86 (26%), Gaps = 4/86 (4%)
Query: 51 AFLMICFV----FPWFALPLLIITTLYHLISKVFRSVYLRSTDEVFQNMWSMLFAFLMIC 106
A +I F P+L S + +++
Sbjct: 136 AKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYF 195
Query: 107 FVFPWFALPLLIITTLYHLISKVFRS 132
F +PLL++ +Y I R
Sbjct: 196 NFFACVLVPLLLMLGVYLRIFLAARR 221
Score = 28.9 bits (64), Expect = 7.0
Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 11/88 (12%)
Query: 4 AFLMICFVFPW---FALPLLIITTLYHLISKVFRSVYLRSVIQNMWSMLF------AFLM 54
A +I W FA+ L + + + + + + LF +++
Sbjct: 136 AKGIIAIC--WVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMV 193
Query: 55 ICFVFPWFALPLLIITTLYHLISKVFRS 82
F +PLL++ +Y I R
Sbjct: 194 YFNFFACVLVPLLLMLGVYLRIFLAARR 221
Score = 28.6 bits (63), Expect = 8.1
Identities = 12/89 (13%), Positives = 23/89 (25%), Gaps = 13/89 (14%)
Query: 101 AFLMICFVFPWFALPLLI----------ITTLYHLISKVFRSVYLRSVFQNMWSMLFAFL 150
A +I W L I + + + ++
Sbjct: 136 AKGIIAIC--WV-LSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYM 192
Query: 151 MICFVFPWFALPLLIITTLYHLISKVFRS 179
+ F +PLL++ +Y I R
Sbjct: 193 VYFNFFACVLVPLLLMLGVYLRIFLAARR 221
Score = 28.6 bits (63), Expect = 8.1
Identities = 12/89 (13%), Positives = 23/89 (25%), Gaps = 13/89 (14%)
Query: 148 AFLMICFVFPWFALPLLI----------ITTLYHLISKVFRSVYLRSVFQNMWSMLFAFL 197
A +I W L I + + + ++
Sbjct: 136 AKGIIAIC--WV-LSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYM 192
Query: 198 MICFVFPWFALPLLIITTLYHLISKVFRS 226
+ F +PLL++ +Y I R
Sbjct: 193 VYFNFFACVLVPLLLMLGVYLRIFLAARR 221
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 34.8 bits (81), Expect = 0.057
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 441 NVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDF 500
R + NV F + + ++G TGAGKS L + +V+ G+++++
Sbjct: 6 RAEKRLGN----FRLNVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGA 60
Query: 501 DIASV 505
DI +
Sbjct: 61 DITPL 65
Score = 31.7 bits (73), Expect = 0.58
Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 35/155 (22%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF- 582
+ ++G TGAGKS L + +V+ G+++++ DI + E R + +PQD LF
Sbjct: 26 YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFP 83
Query: 583 NGTIRYNLDPFG-RCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGD----QLSLGEKQL 637
+ ++ N+ +G R +E+ +V M KL D +LS GE+Q
Sbjct: 84 HLSVYRNIA-YGLR--------NVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQR 134
Query: 638 LCLARALLRKTKKKKKSGVNITRPVTSCDKVLVMD 672
+ LARAL + +P ++L++D
Sbjct: 135 VALARAL-------------VIQP-----RLLLLD 151
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 34.4 bits (80), Expect = 0.057
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 462 NHGENIGIVGRTGAGKSSLLVAL 484
+HG + I GR AGKSSLL AL
Sbjct: 2 SHGMKVVIAGRPNAGKSSLLNAL 24
Score = 31.7 bits (73), Expect = 0.37
Identities = 12/16 (75%), Positives = 12/16 (75%)
Query: 527 IVGRTGAGKSSLLVAL 542
I GR AGKSSLL AL
Sbjct: 9 IAGRPNAGKSSLLNAL 24
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.062
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
Query: 564 ELETLRSRLSVIPQD--PVL-FNGTI 586
L+ L++ L + D P L T+
Sbjct: 21 ALKKLQASLKLYADDSAPALAIKATM 46
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 34.2 bits (79), Expect = 0.077
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 467 IGIVGRTGAGKSSL---LVALFRLVELSSGQIKIDDF 500
+GI G + +GK++L L R +S +DD
Sbjct: 25 LGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH 61
Score = 31.5 bits (72), Expect = 0.54
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 526 GIVGRTGAGKSSL---LVALFRLVELSSGQIKIDDF 558
GI G + +GK++L L R +S +DD
Sbjct: 26 GIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH 61
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 34.5 bits (79), Expect = 0.089
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 466 NIGIVGRTGAGKSSLL 481
I ++G+ G GKSS +
Sbjct: 41 TILVMGKGGVGKSSTV 56
Score = 31.8 bits (72), Expect = 0.67
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 527 IVGRTGAGKSSLL 539
++G+ G GKSS +
Sbjct: 44 VMGKGGVGKSSTV 56
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 34.4 bits (79), Expect = 0.11
Identities = 22/130 (16%), Positives = 50/130 (38%), Gaps = 12/130 (9%)
Query: 112 FALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYH 171
+P+ I+ + ++ V + Q+ W +FA + F F +P+L+I+ Y
Sbjct: 255 VGVPVAIMGSAQVEDEEIECLVEI-PTPQDYWGPVFAICIFLFSF---IVPVLVISVCYS 310
Query: 172 LISKVFRSVYLRSVFQNMWS-------MLFAFLMICFVFPWFALPLLIITTLYHLISKVF 224
L+ + R V L S + ++ ++ FV W + + ++ +
Sbjct: 311 LMIRRLRGVRLLSGSREKDRNLRRITRLVLV-VVAVFVGCWTPVQVFVLAQGLGVQPSSE 369
Query: 225 RSVYLRSVFQ 234
+V +
Sbjct: 370 TAVAILRFCT 379
Score = 33.6 bits (77), Expect = 0.23
Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 9/130 (6%)
Query: 15 FALPLLIITTLYHLISKVFRSVYLRSVIQNMWSMLFAFLMICFVFPWFALPLLIITTLYH 74
+P+ I+ + ++ V + Q+ W +FA + F F +P+L+I+ Y
Sbjct: 255 VGVPVAIMGSAQVEDEEIECLVEI-PTPQDYWGPVFAICIFLFSF---IVPVLVISVCYS 310
Query: 75 LISKVFRSVYLRSTDEVFQNMWS----MLFAFLMICFVFPWFALPLLIITTLYHLISKVF 130
L+ + R V L S ++ ++ FV W + + ++ +
Sbjct: 311 LMIRRLRGVRLLSGSREKDRNLRRITRLVLV-VVAVFVGCWTPVQVFVLAQGLGVQPSSE 369
Query: 131 RSVYLRSVFQ 140
+V +
Sbjct: 370 TAVAILRFCT 379
Score = 29.8 bits (67), Expect = 3.2
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 8/65 (12%)
Query: 5 FLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVIQNMWS-------MLFAFLMICF 57
IC F +P+L+I+ Y L+ + R V L S + ++ ++ F
Sbjct: 288 VFAICIFLFSFIVPVLVISVCYSLMIRRLRGVRLLSGSREKDRNLRRITRLVLV-VVAVF 346
Query: 58 VFPWF 62
V W
Sbjct: 347 VGCWT 351
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 33.9 bits (77), Expect = 0.15
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 12/64 (18%)
Query: 454 LANVSFRINHGENIGIVGRTGAGKSSLL----VALFRLVELSSGQIKIDDF-----DIAS 504
++ G N+ I+G+ G+GKSSLL V L+ L IK D+F
Sbjct: 14 HSDTVVEFKEGINL-IIGQNGSGKSSLLDAILVGLYW--PLRIKDIKKDEFTKVGARDTY 70
Query: 505 VELE 508
++L
Sbjct: 71 IDLI 74
Score = 33.5 bits (76), Expect = 0.21
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 11/52 (21%)
Query: 524 FNGIVGRTGAGKSSLL----VALFRLVELSSGQIKIDDF-----DIASVELE 566
N I+G+ G+GKSSLL V L+ L IK D+F ++L
Sbjct: 25 INLIIGQNGSGKSSLLDAILVGLYW--PLRIKDIKKDEFTKVGARDTYIDLI 74
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 33.7 bits (77), Expect = 0.18
Identities = 24/130 (18%), Positives = 47/130 (36%), Gaps = 21/130 (16%)
Query: 195 AFLMICFVFPWFALPLLI-----ITTLYHLISKVFRSVYLR----SVFQNMWSMLFAFLM 245
A ++I V W + L Y + + Y F N + + +
Sbjct: 299 ARVIILMV--WI-VSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASS-I 354
Query: 246 ICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNVSSTVSGLHIIHV 305
+ F +PL+I+ +Y S+VF+ A R+L++++ N+S H
Sbjct: 355 VSFY-----VPLVIMVFVY---SRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHG 406
Query: 306 FHKEQDFVRR 315
+ F +
Sbjct: 407 LRRSSKFCLK 416
Score = 29.1 bits (65), Expect = 5.1
Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 15/85 (17%)
Query: 51 AFLMICFVFPWFALPLLI-----ITTLYHLISKVFRSVYLRSTD-EVFQNMWSMLFAFLM 104
A ++I V W + L Y + + Y T + F N + + +
Sbjct: 299 ARVIILMV--WI-VSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASS-I 354
Query: 105 ICFVFPWFALPLLIITTLYHLISKV 129
+ F +PL+I+ +Y + +
Sbjct: 355 VSFY-----VPLVIMVFVYSRVFQE 374
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 33.4 bits (76), Expect = 0.25
Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 5/104 (4%)
Query: 112 FALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYH 171
LP++ + T + + ++ S W L + F F +P+LIIT Y
Sbjct: 147 IGLPVMFMATTKYRQGSIDCTLTF-SHPTWYWENLLKICVFIFAF---IMPVLIITVCYG 202
Query: 172 LISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITT 215
L+ +SV + L + ++ + + + T
Sbjct: 203 LMILRLKSVRNIFEMLRIDEGLRLKIYKNT-EGYYTIGIGHLLT 245
Score = 33.4 bits (76), Expect = 0.25
Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 5/104 (4%)
Query: 159 FALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYH 218
LP++ + T + + ++ S W L + F F +P+LIIT Y
Sbjct: 147 IGLPVMFMATTKYRQGSIDCTLTF-SHPTWYWENLLKICVFIFAF---IMPVLIITVCYG 202
Query: 219 LISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITT 262
L+ +SV + L + ++ + + + T
Sbjct: 203 LMILRLKSVRNIFEMLRIDEGLRLKIYKNT-EGYYTIGIGHLLT 245
Score = 32.3 bits (73), Expect = 0.51
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 4/76 (5%)
Query: 93 QNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMI 152
W L + F F +P+LIIT Y L+ +SV + L +
Sbjct: 174 TWYWENLLKICVFIFAF---IMPVLIITVCYGLMILRLKSVRNIFEMLRIDEGLRLKIYK 230
Query: 153 CFVFPWFALPLLIITT 168
++ + + + T
Sbjct: 231 NT-EGYYTIGIGHLLT 245
Score = 30.4 bits (68), Expect = 2.0
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 3 FAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVIQNMWSMLFAFLMICFVFPWF 62
L IC F +P+LIIT Y L+ +SV + + L + ++
Sbjct: 178 ENLLKICVFIFAFIMPVLIITVCYGLMILRLKSVRNIFEMLRIDEGLRLKIYKNT-EGYY 236
Query: 63 ALPLLIITT 71
+ + + T
Sbjct: 237 TIGIGHLLT 245
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 33.3 bits (76), Expect = 0.27
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 5/25 (20%)
Query: 523 LFNGIVGRTGAGKSSLL----VALF 543
+ + G GAGKSSL ALF
Sbjct: 25 IT-VVEGPNGAGKSSLFEAISFALF 48
Score = 32.9 bits (75), Expect = 0.36
Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 4/22 (18%)
Query: 468 GIVGRTGAGKSSLL----VALF 485
+ G GAGKSSL ALF
Sbjct: 27 VVEGPNGAGKSSLFEAISFALF 48
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 32.3 bits (73), Expect = 0.29
Identities = 17/109 (15%), Positives = 37/109 (33%), Gaps = 6/109 (5%)
Query: 521 PVLFNGIVGRTGAGKSSL---LVALFRLVELSSGQIKIDDFDIASVELETLRS-RLSVIP 576
+L IVG + +GK++L ++ + R L +K ++ E S ++
Sbjct: 3 LIL--SIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSG 60
Query: 577 QDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV 625
D V+ + + +L E+ +V +
Sbjct: 61 ADVVIASPVKLAFIRRVSEEEGNDLDWIYERYLSDYDLVITEGFSKAGK 109
Score = 30.8 bits (69), Expect = 0.88
Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 467 IGIVGRTGAGKSSL---LVALFRLVELSSGQIKIDDFDIASVELETLRS 512
+ IVG + +GK++L ++ + R L +K ++ E S
Sbjct: 5 LSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDS 53
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 33.3 bits (76), Expect = 0.30
Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 4/74 (5%)
Query: 234 QNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSPIFSNV 293
++W ++F F I LP ++I + Y +I + + M + +
Sbjct: 202 NDLWVVVFQFQHIMVGL---ILPGIVILSCYCIIISKLSHSGSNIFEMLRIDEGLRLK-I 257
Query: 294 SSTVSGLHIIHVFH 307
G + I + H
Sbjct: 258 YKDTEGYYTIGIGH 271
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 32.5 bits (73), Expect = 0.45
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 466 NIGIVGRTGAGKSSLLVALFR 486
+ +VG +G GKS+L+ +LF
Sbjct: 20 TLMVVGESGLGKSTLINSLFL 40
Score = 29.8 bits (66), Expect = 3.1
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 527 IVGRTGAGKSSLLVALFR 544
+VG +G GKS+L+ +LF
Sbjct: 23 VVGESGLGKSTLINSLFL 40
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 32.5 bits (75), Expect = 0.46
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 461 INHGENIGIVGRTGAGKSSLLVAL 484
+N G + IVG+ GKS+LL L
Sbjct: 240 LNRGLRMVIVGKPNVGKSTLLNRL 263
Score = 32.1 bits (74), Expect = 0.68
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
Query: 522 VLFNG----IVGRTGAGKSSLLVAL 542
+L G IVG+ GKS+LL L
Sbjct: 239 LLNRGLRMVIVGKPNVGKSTLLNRL 263
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 32.5 bits (75), Expect = 0.47
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 17/61 (27%)
Query: 499 DF--DIASVELETLRSRLSVIPQD-----------PVLFNG----IVGRTGAGKSSLLVA 541
DF D+ ++ E + S + I + +L G IVGR GKSSLL A
Sbjct: 184 DFEEDLPPLDDEAIISDIENIAAEISQLLATKDKGELLRTGLKVAIVGRPNVGKSSLLNA 243
Query: 542 L 542
Sbjct: 244 W 244
Score = 32.5 bits (75), Expect = 0.51
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 461 INHGENIGIVGRTGAGKSSLLVAL 484
+ G + IVGR GKSSLL A
Sbjct: 221 LRTGLKVAIVGRPNVGKSSLLNAW 244
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 32.5 bits (75), Expect = 0.51
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 461 INHGENIGIVGRTGAGKSSLLVAL 484
++ G + I G+ AGKS+LL L
Sbjct: 230 VSEGVSTVIAGKPNAGKSTLLNTL 253
Score = 32.1 bits (74), Expect = 0.54
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 18/62 (29%)
Query: 499 DF---DIASVELETLRSRLSVIPQD-----------PVLFNG----IVGRTGAGKSSLLV 540
DF D+ + L ++ + + ++ G I G+ AGKS+LL
Sbjct: 192 DFSEEDVEFQSRDELTMQIETLRSEVNRLIDSYQHGRIVSEGVSTVIAGKPNAGKSTLLN 251
Query: 541 AL 542
L
Sbjct: 252 TL 253
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 32.4 bits (73), Expect = 0.53
Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 21/103 (20%)
Query: 195 AFLMICFVFPWFALPLLI-----ITTLYHLISKVFRSVYLR----SVFQNMWSMLFAFLM 245
A ++I V W + L Y + + Y F N + + ++
Sbjct: 157 ARVIILMV--WI-VSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIV 213
Query: 246 ICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMENVSRSP 288
F +PL+I+ +Y S+VF+ A R+L E +
Sbjct: 214 S------FYVPLVIMVFVY---SRVFQEAKRQLNIFEMLRIDE 247
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 32.0 bits (72), Expect = 0.63
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 466 NIGIVGRTGAGKSSLLVALFRLVELSSGQIKID---DFDIASVELET--LRSRLSVI 517
NI VG TG GKS+L+ LF + +L+ +R +L+++
Sbjct: 44 NILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIV 100
Score = 30.1 bits (67), Expect = 3.0
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKID---DFDIASVELET--LRSRLSVI 575
VG TG GKS+L+ LF + +L+ +R +L+++
Sbjct: 47 CVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIV 100
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 31.7 bits (71), Expect = 0.67
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 466 NIGIVGRTGAGKSSLLVALFR 486
+ +VG +G GKS+L+ +LF
Sbjct: 10 TLMVVGESGLGKSTLINSLFL 30
Score = 29.0 bits (64), Expect = 4.7
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 527 IVGRTGAGKSSLLVALFR 544
+VG +G GKS+L+ +LF
Sbjct: 13 VVGESGLGKSTLINSLFL 30
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 31.9 bits (73), Expect = 0.71
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 501 DIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVAL 542
+ + + R + + + + GR GKSS + AL
Sbjct: 13 RGSHMLEDPRRYTMRLPDAGFRRYIVVAGRRNVGKSSFMNAL 54
Score = 31.9 bits (73), Expect = 0.79
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 467 IGIVGRTGAGKSSLLVAL 484
I + GR GKSS + AL
Sbjct: 37 IVVAGRRNVGKSSFMNAL 54
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion,
hydrolas binding complex; 2.40A {Helicobacter pylori}
SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Length = 330
Score = 31.2 bits (71), Expect = 0.98
Identities = 11/79 (13%), Positives = 28/79 (35%), Gaps = 11/79 (13%)
Query: 414 RGPITS----EFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGI 469
S + + + QG + + + + I G+N+ +
Sbjct: 124 NDETISISIRIPSKTTYPHSFFEEQGFYNLLDNKEQAIS----AIKDG---IAIGKNVIV 176
Query: 470 VGRTGAGKSSLLVALFRLV 488
G TG+GK++ + ++ +
Sbjct: 177 CGGTGSGKTTYIKSIMEFI 195
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A
{Brucella suis}
Length = 361
Score = 31.1 bits (71), Expect = 1.0
Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 10/78 (12%)
Query: 421 FGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFR----------INHGENIGIV 470
+ L D+ +QG K + + L + + I +
Sbjct: 122 PSFTRRTLEDYAQQGFFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVA 181
Query: 471 GRTGAGKSSLLVALFRLV 488
G TG+GK++L+ AL + +
Sbjct: 182 GETGSGKTTLMKALMQEI 199
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 30.4 bits (69), Expect = 1.3
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 8/68 (11%)
Query: 417 ITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAG 476
+ E + + D G IK + R+ + + + + G G G
Sbjct: 15 MPREILRASLSDVDLNDDGRIKAIRFAERFVAEYE--------PGKKMKGLYLHGSFGVG 66
Query: 477 KSSLLVAL 484
K+ LL A+
Sbjct: 67 KTYLLAAI 74
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 31.0 bits (70), Expect = 1.3
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 9/55 (16%)
Query: 430 DWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVAL 484
D ++ + L + + +P + + + G G GKS LL A+
Sbjct: 127 DVNNASRMEAFSAILDFVEQYPS---------AEQKGLYLYGDMGIGKSYLLAAM 172
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 30.1 bits (67), Expect = 1.5
Identities = 12/84 (14%), Positives = 29/84 (34%), Gaps = 1/84 (1%)
Query: 463 HGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDF-DIASVELETLRSRLSVIPQDP 521
I + G + AGKS ++ L ++ +D + +++++ +
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGG 61
Query: 522 VLFNGIVGRTGAGKSSLLVALFRL 545
V + +VA+ R
Sbjct: 62 VSIGPEFRALEGAWAEGVVAMARA 85
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter
sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 30.8 bits (69), Expect = 1.5
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 467 IGIVGRTGAGKSSL---LVALFRLVELSSGQIKIDDF 500
I + G +GAG S++ +FR + + I+ D F
Sbjct: 8 ISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 30.1 bits (68), Expect = 1.6
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 467 IGIVGRTGAGKSSL---LVALFRLVELSSGQIKIDDF 500
+ + G G+GKS+L L A L + + +D F
Sbjct: 25 VALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61
Score = 28.9 bits (65), Expect = 4.3
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 507 LETLRSRLSVIPQDPVLFNGIVGRTGAGKSSL---LVALFRLVELSSGQIKIDDF 558
+ + RL L + G G+GKS+L L A L + + +D F
Sbjct: 8 CQGVLERLDPRQPGRQLV-ALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61
>1p9r_A General secretion pathway protein E; bacterial type II secretion
system cytoplasmic protein - GSPE, putative ATPase/ ATP
binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11
PDB: 1p9w_A*
Length = 418
Score = 30.6 bits (70), Expect = 1.6
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 12/73 (16%)
Query: 486 RLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV---GRTGAGKSSLLVAL 542
RL++ ++ ++ + + + + R + P +GI+ G TG+GKS+ L A
Sbjct: 135 RLLDKNATRLDLHSLGMTAHNHDNFRRLIKR----P---HGIILVTGPTGSGKSTTLYAG 187
Query: 543 FRLVELSSGQIKI 555
L EL+S + I
Sbjct: 188 --LQELNSSERNI 198
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome
condensation, condensin, SMC, N subunit, ABC-type
ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus
ducreyi} PDB: 3euk_A*
Length = 483
Score = 30.6 bits (68), Expect = 1.8
Identities = 12/97 (12%), Positives = 31/97 (31%)
Query: 469 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV 528
+ G GAGKS+ + + + + A + L + V + +
Sbjct: 34 LSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTSSSRDKGLYGKLKAGVCYAVLE 93
Query: 529 GRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL 565
+ + + + ++ I F + +V +
Sbjct: 94 TVNSRAQRIITGVRLQQIAGRDKKVDIRPFSLQNVPM 130
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 31.0 bits (70), Expect = 1.9
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 506 ELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVEL 548
+ ++ +L + +P I G G GKS L R L
Sbjct: 132 LVHAIQQKLWKLNGEPGWV-TIYGMAGCGKSVLAAEAVRDHSL 173
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 30.5 bits (68), Expect = 1.9
Identities = 28/163 (17%), Positives = 50/163 (30%), Gaps = 19/163 (11%)
Query: 464 GENIGIVGRTGAGKSSLLVALFR-LVELSSGQIKIDDFDIASVELETLRSR----LSVIP 518
+ +G TG GK+ + +F + E+ + D A V + LS +
Sbjct: 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLA 104
Query: 519 QDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQD 578
V + G + + I +D+ D L R V+ Q
Sbjct: 105 GKL--TGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVD----TLVKRRGGDIVLYQ- 157
Query: 579 PVLFNGTIRYNLDPFGRCHDTELWDALE---KSHLKSKVVTMR 618
L ++ +D + D +E S L V+
Sbjct: 158 --LLRSDANISV--IMISNDINVRDYMEPRVLSSLGPSVIFKP 196
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 30.0 bits (67), Expect = 2.1
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 444 LRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALF 485
+ + + N+ F+ + +VGRTGAGKS+ ++
Sbjct: 1 MHHHHHHSSGRENLYFQGESTRRLILVGRTGAGKSATGNSIL 42
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 30.0 bits (67), Expect = 2.4
Identities = 18/131 (13%), Positives = 43/131 (32%), Gaps = 20/131 (15%)
Query: 399 VERINNCSKKLVPEGRGPITSEFGQVKVKLADWPRQGTIKFKNVS--LRYRDNWPLVLAN 456
+ IN + E I + T++ V+ + + + + +
Sbjct: 45 CQIINEKYHTFLSEHPNVIEVNDRLKPMVNLV-DSLKTLQPNKVAEMIENQGLFKDHVED 103
Query: 457 VSFRI--------NHGENIGIVGRTGAGKSSLLVALFRLVELSS---------GQIKIDD 499
V+F+ N+ E +V R G + + A+ V ++ + +D
Sbjct: 104 VNFQPVKYSALTSNNEECTAVVARGGTANAIRIAAVDNPVNVNKLAQDSINIAQIVPMDG 163
Query: 500 FDIASVELETL 510
F ++ L+
Sbjct: 164 FHLSRRCLDLF 174
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 30.0 bits (67), Expect = 2.4
Identities = 15/98 (15%), Positives = 32/98 (32%), Gaps = 14/98 (14%)
Query: 195 AFLMICFVFPWFA------LPLLI---ITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLM 245
A +I W P+L + + + +++
Sbjct: 146 AKGIIAIC--WVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMV 203
Query: 246 ICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRMEN 283
F +PLL++ +Y ++F A R+L +E+
Sbjct: 204 YFNFFACVLVPLLLMLGVY---LRIFLAARRQLADLED 238
Score = 29.3 bits (65), Expect = 4.7
Identities = 13/88 (14%), Positives = 23/88 (26%), Gaps = 8/88 (9%)
Query: 51 AFLMICFVFPWFA------LPLLIITTLYHLISKVFRSVYLRSTDEVFQNMWSMLFAFLM 104
A +I W P+L S + +++
Sbjct: 146 AKGIIAIC--WVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMV 203
Query: 105 ICFVFPWFALPLLIITTLYHLISKVFRS 132
F +PLL++ +Y I R
Sbjct: 204 YFNFFACVLVPLLLMLGVYLRIFLAARR 231
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 30.4 bits (69), Expect = 2.5
Identities = 28/209 (13%), Positives = 66/209 (31%), Gaps = 36/209 (17%)
Query: 92 FQNMWSMLFAFLMICFVFPWFALPLLIITTLYHL--------------------ISKVFR 131
+ ++ + L+ F F A +LII L + ++F
Sbjct: 654 IRIVFGFMLIALIWEFDFS--AFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKLKEIFA 711
Query: 132 SVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWS 191
+ + +Q + +++F + F + I H + +VYL+ +
Sbjct: 712 TGVVLGGYQAIMTVIFFWAAHKTDFFSDTFGVRSIRDNNHEL---MGAVYLQVSIISQAL 768
Query: 192 MLFAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFP 251
+ L+I + LI+ + + F I +
Sbjct: 769 IFVTRSRSWSFVERPGALLMIAFLIAQLIATLI-----------AVYANWEFAKIRGIGW 817
Query: 252 WFALPLLIITTLYHLISKVFRIAVRELKR 280
+A + + + + + VF+ A+R +
Sbjct: 818 GWAGVIWLYSIVTYFPLDVFKFAIRYILS 846
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, binding; 1.70A {Thermus thermophilus} PDB:
2d2f_A*
Length = 250
Score = 29.8 bits (68), Expect = 2.5
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALF--RLVELSSGQIKIDDFDIASVELETL 510
+L V+ + GE ++G GAGKS+L L + G+I +D +I + +
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDE- 76
Query: 511 RSRL 514
R+R
Sbjct: 77 RARK 80
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 29.8 bits (67), Expect = 2.6
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 441 NVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVAL 484
+ +R+ +L + + +GI G G GKS+ + AL
Sbjct: 56 STRPDHREQAQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEAL 99
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 29.9 bits (66), Expect = 2.6
Identities = 11/98 (11%), Positives = 32/98 (32%), Gaps = 2/98 (2%)
Query: 464 GENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL 523
+ I + K L+ + + SS + ++ FD ++ L ++ +
Sbjct: 45 NKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFA 104
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQ--IKIDDFD 559
+ +L + + + + I I + +
Sbjct: 105 ISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPE 142
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 29.2 bits (65), Expect = 2.7
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 467 IGIVGRTGAGKSSL---LVALFRLVELSSGQIKIDDFDIASVELETLRS 512
+VG +GK++L VA G +K E + S
Sbjct: 7 WQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDS 55
Score = 28.1 bits (62), Expect = 6.2
Identities = 14/72 (19%), Positives = 20/72 (27%), Gaps = 6/72 (8%)
Query: 521 PVLFNGIVGRTGAGKSSL---LVALFRLVELSSGQIKIDDFDIASVELETLRS-RLSVIP 576
V +VG +GK++L VA G +K E + S R
Sbjct: 5 NVW--QVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHERAG 62
Query: 577 QDPVLFNGTIRY 588
G
Sbjct: 63 AVATAVEGDGLL 74
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 29.6 bits (66), Expect = 3.0
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 466 NIGIVGRTGAGKSSLLVALF-RLVELSSGQIKIDDFDIASVELETLRSRLSVI 517
I +VG+TGAGKS+ ++ R V S K + L V+
Sbjct: 31 RIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVV 83
Score = 28.8 bits (64), Expect = 4.7
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 518 PQDPVLFNGIVGRTGAGKSSLLVALF-RLVELSSGQIKIDDFDIASVELETLRSRLSVI 575
P++ L +VG+TGAGKS+ ++ R V S K + L V+
Sbjct: 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVV 83
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase,
hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB:
2oaq_1
Length = 511
Score = 29.7 bits (67), Expect = 3.5
Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 16/89 (17%)
Query: 461 INHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQD 520
I H + +VG T +GK++ L A+ + + + I+D + E++ + +
Sbjct: 257 IEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIED----TREIK--------LYHE 304
Query: 521 PVLFNGIVGRTGAGKSSLLVALFRLVELS 549
+ V RTG G+ + ++ L+ +
Sbjct: 305 NWI--AEVTRTGMGEGE--IDMYDLLRAA 329
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 29.4 bits (67), Expect = 3.6
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 453 VLANVSFRINHGENIGIVGRTGAGKSSLLVALF--RLVELSSGQIKIDDFDIASVELETL 510
+L +S ++ GE I+G G+GKS+L L E++ G ++ D+ ++ E
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPED- 93
Query: 511 RSRL 514
R+
Sbjct: 94 RAGE 97
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 29.1 bits (66), Expect = 3.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 467 IGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDF 500
IGI G T +GK++L AL R + + +D +
Sbjct: 9 IGIAGGTASGKTTLAQALARTLGERVALLPMDHY 42
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 29.5 bits (67), Expect = 3.9
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 467 IGIVGRTGAGKSSLLVAL 484
IGIVG T +GK+SL +L
Sbjct: 182 IGIVGYTNSGKTSLFNSL 199
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein
structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 29.4 bits (66), Expect = 4.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 467 IGIVGRTGAGKSSLLVAL 484
+G+ G GAGKS+ L A
Sbjct: 59 LGVTGTPGAGKSTFLEAF 76
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 29.5 bits (66), Expect = 4.2
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 467 IGIVGRTGAGKSSLLVAL 484
+G+ G GAGKS+ +
Sbjct: 77 VGLSGPPGAGKSTFIEYF 94
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10
PDB: 2qm7_A*
Length = 337
Score = 29.3 bits (66), Expect = 4.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 467 IGIVGRTGAGKSSLLVAL 484
+GI G G GKS+ + AL
Sbjct: 58 VGITGVPGVGKSTTIDAL 75
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 29.3 bits (66), Expect = 4.4
Identities = 16/125 (12%), Positives = 41/125 (32%), Gaps = 16/125 (12%)
Query: 51 AFLMICFVFPW-----FALPLLIITTLYHLISKVFRSVYLRSTDEVFQNMWSMLFAFLMI 105
A ++IC V W + +++ + + + N + + ++
Sbjct: 128 AKVIICTV--WAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIIS 185
Query: 106 CFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLI 165
+ +PLLI+ + +V+R + + S ++ L I
Sbjct: 186 FY------IPLLIMIFVA---LRVYREAKEQIRKIDRASKRKTSRVMLMREHKALKTLGI 236
Query: 166 ITTLY 170
I ++
Sbjct: 237 IMGVF 241
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 28.7 bits (64), Expect = 5.0
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 467 IGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDF 500
IGI G T +GK++L L + + + I DDF
Sbjct: 24 IGISGVTNSGKTTLAKNLQKHLP-NCSVISQDDF 56
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding; HET:
DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 28.5 bits (64), Expect = 5.6
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 458 SFRINHGENIGIVGRTGAGKSSLLVAL 484
+F G+ + VG G GK+ L VA
Sbjct: 32 NFNPEEGKGLTFVGSPGVGKTHLAVAT 58
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding
protein; 2.30A {Archaeoglobus fulgidus}
Length = 221
Score = 28.7 bits (65), Expect = 5.7
Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 8/40 (20%)
Query: 467 IGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE 506
+ I+G G+GK+ L+ + ++ I ++
Sbjct: 33 VNIMGAIGSGKTLLIERTIERIG--------NEVKIGAML 64
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 28.9 bits (64), Expect = 5.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 466 NIGIVGRTGAGKSSLLVALFR 486
I +VG+TG GKS+ ++ R
Sbjct: 24 RIILVGKTGTGKSAAGNSILR 44
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 28.6 bits (64), Expect = 6.0
Identities = 13/88 (14%), Positives = 32/88 (36%), Gaps = 11/88 (12%)
Query: 527 IVGRTGAGKSSLLV----ALFRL-------VELSSGQIKIDDFDIASVELETLRSRLSVI 575
++G + GKSS+++ F + + ++D +I + + ++ I
Sbjct: 12 LLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSI 71
Query: 576 PQDPVLFNGTIRYNLDPFGRCHDTELWD 603
D + N + ++WD
Sbjct: 72 NDDNNVIITNQHNNYNENLCNIKFDIWD 99
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 28.4 bits (64), Expect = 6.0
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 8/40 (20%)
Query: 467 IGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE 506
+G G+GK+ L+ L ++ D + IA +
Sbjct: 41 FDFMGAIGSGKTLLIEKLIDNLK--------DKYKIACIA 72
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 28.3 bits (62), Expect = 6.7
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 467 IGIVGRTGAGKSSL---LVALFRLVELSSGQIKID--DFDIASVELETLRSRLSVIPQD 520
+ +G GK++L L+ + G IK D D+ ++ R + Q
Sbjct: 9 LAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQT 67
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 28.7 bits (65), Expect = 7.0
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 10/46 (21%)
Query: 508 ETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQI 553
E L+ ++S + G +G GKSSLL A+ ++L ++
Sbjct: 165 EYLKGKISTM----------AGLSGVGKSSLLNAINPGLKLRVSEV 200
Score = 28.3 bits (64), Expect = 8.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 469 IVGRTGAGKSSLLVALFRLVELSSGQI 495
+ G +G GKSSLL A+ ++L ++
Sbjct: 174 MAGLSGVGKSSLLNAINPGLKLRVSEV 200
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 28.3 bits (64), Expect = 7.5
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 10/46 (21%)
Query: 508 ETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQI 553
+ + +V G++G GKSSLL A+ + L + +I
Sbjct: 169 PHFQDKTTVF----------AGQSGVGKSSLLNAISPELGLRTNEI 204
Score = 28.3 bits (64), Expect = 8.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 469 IVGRTGAGKSSLLVALFRLVELSSGQI 495
G++G GKSSLL A+ + L + +I
Sbjct: 178 FAGQSGVGKSSLLNAISPELGLRTNEI 204
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 28.5 bits (63), Expect = 7.7
Identities = 20/129 (15%), Positives = 38/129 (29%), Gaps = 13/129 (10%)
Query: 460 RINHGENIGIVGRTGAGKSSLLVALFR--------LVELSSGQIKIDDFDIASVELETLR 511
+ + ++G GKSSLL A EL + + I ++ T+
Sbjct: 27 SLENYPLTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHITREELIKELQSTIS 86
Query: 512 SRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIK----IDDFD-IASVELE 566
+ + N K SL L +L + D+ +
Sbjct: 87 PFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSR 146
Query: 567 TLRSRLSVI 575
+ L++
Sbjct: 147 GGKELLALF 155
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD,
transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP:
c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Length = 252
Score = 28.3 bits (63), Expect = 8.7
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 501 DIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSL---LVALFRLVELSSGQIKI-- 555
+A +TL++ +P L G+ G T +GKSS+ +V L E+ Q ++
Sbjct: 2 GMAGDSEQTLQNHQQPNGGEPFLI-GVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVI 60
Query: 556 ---DDF 558
D F
Sbjct: 61 LSQDSF 66
Score = 27.9 bits (62), Expect = 9.9
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
Query: 467 IGIVGRTGAGKSSL---LVALFRLVELSSGQIKI-----DDF 500
IG+ G T +GKSS+ +V L E+ Q ++ D F
Sbjct: 25 IGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSF 66
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.332 0.142 0.440
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,176,306
Number of extensions: 613458
Number of successful extensions: 2570
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2404
Number of HSP's successfully gapped: 292
Length of query: 677
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 577
Effective length of database: 3,909,693
Effective search space: 2255892861
Effective search space used: 2255892861
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 61 (27.7 bits)