RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy845
(677 letters)
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 125 bits (315), Expect = 7e-33
Identities = 56/275 (20%), Positives = 105/275 (38%), Gaps = 90/275 (32%)
Query: 433 RQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSS 492
+QG I +VS +Y DN +L ++
Sbjct: 13 KQGRIDIDHVSFQYNDNEAPILKDI----------------------------------- 37
Query: 493 GQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQ 552
+ I E VG +G GKS+L+ + R +++SGQ
Sbjct: 38 ------NLSIEKGE-----------------TVAFVGMSGGGKSTLINLIPRFYDVTSGQ 74
Query: 553 IKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNL-DPFGRCHDTELWDALEKSHLK 611
I ID +I +LR+++ ++ QD +LF+ T++ N+ D E+ +A + ++
Sbjct: 75 ILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAH 134
Query: 612 SKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTK-------------------- 649
++ + D++V +G +LS G+KQ L +AR L
Sbjct: 135 DFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQ 194
Query: 650 ------KKKKSGVNIT---RPVTSCDKVLVMDNGQ 675
K ++ + + +T DK++V++NG
Sbjct: 195 EALDVLSKDRTTLIVAHRLSTITHADKIVVIENGH 229
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 110 bits (276), Expect = 1e-27
Identities = 50/275 (18%), Positives = 102/275 (37%), Gaps = 91/275 (33%)
Query: 434 QGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSG 493
G ++F+NV+ Y L N+
Sbjct: 11 TGDLEFRNVTFTYPGREVPALRNI------------------------------------ 34
Query: 494 QIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQI 553
+ I + + +VGR+G+GKS++ + R ++ G I
Sbjct: 35 -----NLKIPAGK-----------------TVALVGRSGSGKSTIASLITRFYDIDEGHI 72
Query: 554 KIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYN--LDPFGRCHDTELWDALEKSHLK 611
+D D+ L +LR++++++ Q+ LFN T+ N ++ +A ++
Sbjct: 73 LMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAM 132
Query: 612 SKVVTMRSKLDSDV--QGDQLSLGEKQLLCLARALLRKTK-------------------- 649
+ M + LD+ + G LS G++Q + +ARALLR +
Sbjct: 133 DFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQ 192
Query: 650 ------KKKKSGVNIT-RP--VTSCDKVLVMDNGQ 675
+K ++ + I R + D+++V+++G
Sbjct: 193 AALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGI 227
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 107 bits (269), Expect = 7e-27
Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 33/185 (17%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 583
G +G GKS++ L R + ++G+I ID I ++ LE RS++ + QD +
Sbjct: 30 IIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA 89
Query: 584 GTIRYNLD--PFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLC 639
GTIR NL G D +LW L+ + +S V M +L+++V +G ++S G++Q L
Sbjct: 90 GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLA 149
Query: 640 LARALLRKTK--------------------------KKKKSGVNIT---RPVTSCDKVLV 670
+ARA LR K K ++ + I + DK+
Sbjct: 150 IARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYF 209
Query: 671 MDNGQ 675
++ GQ
Sbjct: 210 IEKGQ 214
Score = 96.9 bits (241), Expect = 3e-23
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+ ++V Y D+ +L ++SF I G +G GKS++ L R + ++G+I
Sbjct: 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFNG 526
ID I ++ LE RS++ + QD + G
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAG 90
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 106 bits (265), Expect = 2e-26
Identities = 53/255 (20%), Positives = 97/255 (38%), Gaps = 36/255 (14%)
Query: 428 LADWPRQGTIKFKNVSLRYRDN-WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFR 486
L +G ++F++VS Y + LVL ++F + GE +VG G+GKS++ L
Sbjct: 3 LTPLHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQN 62
Query: 487 LVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLV 546
L + + GQ+ +D + E L +++ + Q+P +F + +
Sbjct: 63 LYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQEN--------------I 108
Query: 547 ELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALE 606
Q + A+ S +S +PQ L G+ L AL
Sbjct: 109 AYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSG-GQRQAVALARAL- 166
Query: 607 KSHLKSKVVTMR---SKLDSDVQGDQLSLGEKQLLCLARALLRKTKKKKKSGVNIT---R 660
K V+ + S LD++ Q + + L ++ +S + IT
Sbjct: 167 --IRKPCVLILDDATSALDANSQLQ-----------VEQLLYESPERYSRSVLLITQHLS 213
Query: 661 PVTSCDKVLVMDNGQ 675
V D +L ++ G
Sbjct: 214 LVEQADHILFLEGGA 228
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 103 bits (257), Expect = 2e-25
Identities = 37/90 (41%), Positives = 56/90 (62%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I F+N+ RY+ + P++L N++ I GE IGIVGR+G+GKS+L + R +GQ+
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFNG 526
ID D+A + LR ++ V+ QD VL N
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNR 91
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 95.4 bits (237), Expect = 2e-22
Identities = 36/184 (19%), Positives = 66/184 (35%), Gaps = 45/184 (24%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 583
I G TG+GK+SLL+ + +E S G IK R+S Q +
Sbjct: 64 MLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQFSWIMP 110
Query: 584 GTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDV--QGDQLSLGEKQLLCLA 641
GTI+ N+ + ++ L+ + + ++ + G LS G++ + LA
Sbjct: 111 GTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLA 170
Query: 642 RALLRKT---------------------------KKKKKSGVNIT---RPVTSCDKVLVM 671
RA+ + K+ + +T + DK+L++
Sbjct: 171 RAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILIL 230
Query: 672 DNGQ 675
G
Sbjct: 231 HQGS 234
Score = 84.2 bits (208), Expect = 1e-18
Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 17/117 (14%)
Query: 412 EGRGPITSEFGQVKVKLADWPRQGTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVG 471
EG G + + Q + + F ++ L VL N++ I GE + I G
Sbjct: 14 EGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNP----VLKNINLNIEKGEMLAITG 69
Query: 472 RTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIV 528
TG+GK+SLL+ + +E S G IK R+S Q + G +
Sbjct: 70 STGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQFSWIMPGTI 113
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 76.4 bits (188), Expect = 4e-16
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 15/102 (14%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+ ++ RY + VL VS + G+ I I+G +G+GKS+ L + L + S G I
Sbjct: 3 LHVIDLHKRYGGH--EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 60
Query: 497 IDDFDIASV-------------ELETLRSRLSVIPQDPVLFN 525
++ +I V +L LR+RL+++ Q L++
Sbjct: 61 VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWS 102
Score = 66.0 bits (161), Expect = 1e-12
Identities = 32/141 (22%), Positives = 61/141 (43%), Gaps = 16/141 (11%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV-------------ELETLRS 570
I+G +G+GKS+ L + L + S G I ++ +I V +L LR+
Sbjct: 30 VISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRT 89
Query: 571 RLSVIPQDPVLFNG--TIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGD 628
RL+++ Q L++ + ++ + DA E++ V + +
Sbjct: 90 RLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQ-GKYPV 148
Query: 629 QLSLGEKQLLCLARALLRKTK 649
LS G++Q + +ARAL +
Sbjct: 149 HLSGGQQQRVSIARALAMEPD 169
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 75.3 bits (185), Expect = 7e-16
Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 437 IKFKNVSLRYRDNWPLVLA--NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
IK KNV+ Y+ ++ A NV+ I GE + I+G +G+GKS++L + L + + G+
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 495 IKIDDFDIASVELETL----RSRLSVIPQDPVLF 524
+ ID+ ++ + L R ++ + Q L
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLI 95
Score = 66.4 bits (162), Expect = 7e-13
Identities = 33/191 (17%), Positives = 78/191 (40%), Gaps = 40/191 (20%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETL----RSRLSVIPQDP 579
F I+G +G+GKS++L + L + + G++ ID+ ++ + L R ++ + Q
Sbjct: 33 FVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQF 92
Query: 580 VLFNG-TIRYNLD---PFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEK 635
L T N++ F + +++ K+ + + ++ + +QLS G++
Sbjct: 93 NLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF-ANHKPNQLSGGQQ 151
Query: 636 QLLCLARALLRK----------------------------TKKKKKSGVNIT---RPVTS 664
Q + +ARAL ++ K+ V +T
Sbjct: 152 QRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARF 211
Query: 665 CDKVLVMDNGQ 675
++++ + +G+
Sbjct: 212 GERIIYLKDGE 222
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 72.6 bits (178), Expect = 6e-15
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 437 IKFKNVSLRYRDNWPLVLA--NVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
IK N++ + + A NVS + G+ G++G +GAGKS+L+ + L + G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 495 IKIDDFDIASV---ELETLRSRLSVIPQDPVLFN 525
+ +D ++ ++ EL R ++ +I Q L +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLS 95
Score = 70.3 bits (172), Expect = 4e-14
Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASV---ELETLRSRLSVIPQDPV 580
G++G +GAGKS+L+ + L + G + +D ++ ++ EL R ++ +I Q
Sbjct: 33 IYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFN 92
Query: 581 LF-NGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLC 639
L + T+ N+ +T + + +V + K DS LS G+KQ +
Sbjct: 93 LLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP--SNLSGGQKQRVA 150
Query: 640 LARALLRKTK 649
+ARAL K
Sbjct: 151 IARALASNPK 160
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 69.8 bits (171), Expect = 5e-14
Identities = 20/88 (22%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
+K +N++ R+ + + ++ I GE + ++G +G GK++ L + L E + G+I
Sbjct: 7 VKLENLTKRFGNF--TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 64
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLF 524
D D+ L +S++ Q ++
Sbjct: 65 FGDRDVT--YLPPKDRNISMVFQSYAVW 90
Score = 68.6 bits (168), Expect = 1e-13
Identities = 26/127 (20%), Positives = 59/127 (46%), Gaps = 5/127 (3%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 583
F ++G +G GK++ L + L E + G+I D D+ L +S++ Q ++
Sbjct: 34 FLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVT--YLPPKDRNISMVFQSYAVWP 91
Query: 584 G-TIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLAR 642
T+ N+ + + ++ ++++ + L+ QLS G++Q + +AR
Sbjct: 92 HMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP--AQLSGGQRQRVAVAR 149
Query: 643 ALLRKTK 649
A++ +
Sbjct: 150 AIVVEPD 156
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 67.7 bits (165), Expect = 2e-13
Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ ++V+ R L +S + GE + +VG GAGKS+LL + + G I+
Sbjct: 4 MQLQDVAESTR------LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQ 56
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLF 524
+ + L + + Q
Sbjct: 57 FAGQPLEAWSATKLALHRAYLSQQQTPP 84
Score = 65.7 bits (160), Expect = 1e-12
Identities = 28/126 (22%), Positives = 44/126 (34%), Gaps = 13/126 (10%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDP-VLFNG 584
+VG GAGKS+LL + + G I+ + + L + + Q F
Sbjct: 29 HLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFAT 87
Query: 585 TIRYNLDPFGRCHDTELW--DALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLAR 642
+ + L D L K+ +QLS GE Q + LA
Sbjct: 88 PVWHYLTLHQHDKTRTELLNDVAGALALDDKL---------GRSTNQLSGGEWQRVRLAA 138
Query: 643 ALLRKT 648
+L+ T
Sbjct: 139 VVLQIT 144
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 67.3 bits (164), Expect = 5e-13
Identities = 27/126 (21%), Positives = 55/126 (43%), Gaps = 10/126 (7%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ +N+ + + L VS +N G+ I+G G+GKS+L+ + ++ G++
Sbjct: 5 LRTENIVKYFGEF--KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 62
Query: 497 IDDFDIASVEL-ETLRSRLSVIPQDP-------VLFNGIVGRTGAGKSSLLVALFRLVEL 548
++ DI + E E + Q P VL N ++G G+S L ++
Sbjct: 63 FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP 122
Query: 549 SSGQIK 554
++
Sbjct: 123 KEEEMV 128
Score = 58.8 bits (142), Expect = 3e-10
Identities = 39/194 (20%), Positives = 67/194 (34%), Gaps = 44/194 (22%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVEL-ETLRSRLSVIPQDPVLF-N 583
I+G G+GKS+L+ + ++ G++ ++ DI + E E + Q P
Sbjct: 34 LIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 93
Query: 584 GTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDS-----------DVQGDQLSL 632
T+ NL C ++L K M K D + +LS
Sbjct: 94 MTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSG 153
Query: 633 GEKQLLCLARAL---------------------------LRKTKKKKKSGVNITRPV--- 662
G+ +L+ + RAL + + K K + + I +
Sbjct: 154 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIV 213
Query: 663 -TSCDKVLVMDNGQ 675
D + VM NGQ
Sbjct: 214 LNYIDHLYVMFNGQ 227
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 66.6 bits (162), Expect = 6e-13
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 435 GTIKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQ 494
G + K++ R +L +SF I GE G++G GAGK++ L + L++ SSG
Sbjct: 1 GAVVVKDLRKRIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
Query: 495 IKIDDFDIASVELETLRSRLSVIPQDPVLFN 525
+ + ++ E +R +S +P++ +
Sbjct: 59 VTVFGKNV-VEEPHEVRKLISYLPEEAGAYR 88
Score = 61.9 bits (150), Expect = 3e-11
Identities = 32/182 (17%), Positives = 71/182 (39%), Gaps = 35/182 (19%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLF-NG 584
G++G GAGK++ L + L++ SSG + + ++ E +R +S +P++ + N
Sbjct: 32 GLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNV-VEEPHEVRKLISYLPEEAGAYRNM 90
Query: 585 TIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARAL 644
L + + + E +++ + K+ V S G + L +ARAL
Sbjct: 91 QGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRV--STYSKGMVRKLLIARAL 148
Query: 645 ---------------------------LRKTKKKKKSGVNITRPVTS----CDKVLVMDN 673
L++ ++ + + + + CD++ ++ N
Sbjct: 149 MVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHN 208
Query: 674 GQ 675
G
Sbjct: 209 GT 210
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 65.5 bits (159), Expect = 1e-12
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I KNVS ++ + L NV+ I +GE GI+G +GAGK++ + + L S+G++
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 497 IDDFDIASVELETLRSR---LSVIPQDPVLF 524
DD +AS + + ++ Q L+
Sbjct: 64 FDDRLVASNGKLIVPPEDRKIGMVFQTWALY 94
Score = 50.9 bits (121), Expect = 1e-07
Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 6/131 (4%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSR---LSVIPQDPV 580
GI+G +GAGK++ + + L S+G++ DD +AS + + ++ Q
Sbjct: 33 RFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWA 92
Query: 581 LFNG-TIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLC 639
L+ T N+ + ++ +K++ + L+ +LS ++Q +
Sbjct: 93 LYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP--RELSGAQQQRVA 150
Query: 640 LARALLRKTKK 650
LARAL++
Sbjct: 151 LARALVKDPSL 161
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 64.6 bits (157), Expect = 3e-12
Identities = 20/88 (22%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ +NV+ + + V +++ I+ GE + VG +G GKS+LL + L ++SG +
Sbjct: 1 VQLQNVTKAWGEVV--VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 58
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLF 524
I + + + + ++ Q L+
Sbjct: 59 IGEKRMN--DTPPAERGVGMVFQSYALY 84
Score = 63.4 bits (154), Expect = 8e-12
Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 5/127 (3%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 583
F VG +G GKS+LL + L ++SG + I + + + + ++ Q L+
Sbjct: 28 FVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMN--DTPPAERGVGMVFQSYALYP 85
Query: 584 GTIRY-NLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLAR 642
N+ + + ++ + ++V+ + LD LS G++Q + + R
Sbjct: 86 HLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP--KALSGGQRQRVAIGR 143
Query: 643 ALLRKTK 649
L+ +
Sbjct: 144 TLVAEPS 150
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 63.4 bits (154), Expect = 4e-12
Identities = 17/94 (18%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ +++S+ Y VL ++ I G + G G GK++LL + ++ G+I
Sbjct: 3 LEIRDLSVGYDKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 59
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFNGIVGR 530
+ I ++ ++ +P++ ++ I
Sbjct: 60 YNGVPITK-----VKGKIFFLPEEIIVPRKISVE 88
Score = 53.0 bits (127), Expect = 1e-08
Identities = 25/132 (18%), Positives = 51/132 (38%), Gaps = 21/132 (15%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 583
G G GK++LL + ++ G+I + I ++ ++ +P++ ++
Sbjct: 29 VVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKIFFLPEEIIVPR 83
Query: 584 G-TIRYNLDPFGRCH-----DTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQL 637
++ L + E+ DALE + LD + +LS G +
Sbjct: 84 KISVEDYLKAVASLYGVKVNKNEIMDALESVEV----------LDLKKKLGELSQGTIRR 133
Query: 638 LCLARALLRKTK 649
+ LA LL +
Sbjct: 134 VQLASTLLVNAE 145
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 61.6 bits (149), Expect = 3e-11
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
I+ +++S ++++ L N+S ++ GE I+G TGAGK+ L + SG+I
Sbjct: 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLF 524
+D D+ +L + ++ + Q+ LF
Sbjct: 59 LDGKDVT--DLSPEKHDIAFVYQNYSLF 84
Score = 49.3 bits (117), Expect = 4e-07
Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 16/132 (12%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 583
+ I+G TGAGK+ L + SG+I +D D+ +L + ++ + Q+ LF
Sbjct: 28 YFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVT--DLSPEKHDIAFVYQNYSLFP 85
Query: 584 G-----TIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLL 638
+ + + + D ++ D LS GE+Q +
Sbjct: 86 HMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEH---------LLDRNPLTLSGGEQQRV 136
Query: 639 CLARALLRKTKK 650
LARAL+ K
Sbjct: 137 ALARALVTNPKI 148
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 61.9 bits (150), Expect = 3e-11
Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ +V + + + +S + GE + ++G +G GK++ L + L E S GQI
Sbjct: 4 VRLVDVWKVFGEVT--AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY 61
Query: 497 IDDFDIASVELETLR----SRLSVIPQDPVLF 524
I D +A E ++++ Q L+
Sbjct: 62 IGDKLVADPEKGIFVPPKDRDIAMVFQSYALY 93
Score = 60.7 bits (147), Expect = 7e-11
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 7/131 (5%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR----SRLSVIPQDP 579
F ++G +G GK++ L + L E S GQI I D +A E ++++ Q
Sbjct: 31 FMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSY 90
Query: 580 VLFNGTIRY-NLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLL 638
L+ Y N+ + + ++ ++++ + L+ +LS G++Q +
Sbjct: 91 ALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP--RELSGGQRQRV 148
Query: 639 CLARALLRKTK 649
L RA++RK +
Sbjct: 149 ALGRAIVRKPQ 159
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 60.0 bits (145), Expect = 1e-10
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 5/127 (3%)
Query: 524 FNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 583
+ ++G TGAGKS L + +V+ G+++++ DI L R + +PQD LF
Sbjct: 26 YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPERRGIGFVPQDYALFP 83
Query: 584 GTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARA 643
Y +G + E + + ++ + + LD +LS GE+Q + LARA
Sbjct: 84 HLSVYRNIAYGLRN-VERVERDRRVREMAEKLGIAHLLDRKPA--RLSGGERQRVALARA 140
Query: 644 LLRKTKK 650
L+ + +
Sbjct: 141 LVIQPRL 147
Score = 56.9 bits (137), Expect = 1e-09
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 455 ANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL 514
NV F + + ++G TGAGKS L + +V+ G+++++ DI L R +
Sbjct: 16 LNVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPERRGI 72
Query: 515 SVIPQDPVLF 524
+PQD LF
Sbjct: 73 GFVPQDYALF 82
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 56.1 bits (135), Expect = 2e-09
Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 4/126 (3%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSV-IPQDPVLF-N 583
++G GAGK++ L A+ LV G+I + DI + + +P+ +F
Sbjct: 36 TLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE 95
Query: 584 GTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARA 643
T+ NL + + + S ++ +L G LS GE+Q+L + RA
Sbjct: 96 LTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQ--LGGTLSGGEQQMLAIGRA 153
Query: 644 LLRKTK 649
L+ + K
Sbjct: 154 LMSRPK 159
Score = 54.1 bits (130), Expect = 1e-08
Identities = 13/64 (20%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIK 496
++ +++ + Y + + ++ G+ + ++G GAGK++ L A+ LV G+I
Sbjct: 7 LEVQSLHVYYGAI--HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
Query: 497 IDDF 500
+
Sbjct: 65 FNGQ 68
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 50.0 bits (118), Expect = 1e-07
Identities = 12/153 (7%), Positives = 41/153 (26%), Gaps = 3/153 (1%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
I G G GK++L+ + + + ++ + T ++ + + +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKF 63
Query: 586 IRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALL 645
+ + ++ L L+ + + D++ E +
Sbjct: 64 FTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVR 123
Query: 646 RKTKKKKKSGVNIT---RPVTSCDKVLVMDNGQ 675
+ + V ++ +
Sbjct: 124 QIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAV 156
Score = 43.1 bits (100), Expect = 3e-05
Identities = 8/59 (13%), Positives = 22/59 (37%)
Query: 467 IGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 525
I I G G GK++L+ + + + ++ + T ++ + + +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSS 61
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 40.0 bits (92), Expect = 3e-04
Identities = 8/81 (9%), Positives = 22/81 (27%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGT 585
+ G G GK++L+ +++ S + + + + + +
Sbjct: 5 FLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRV 64
Query: 586 IRYNLDPFGRCHDTELWDALE 606
C + L
Sbjct: 65 GLEPPPGKRECRVGQYVVDLT 85
Score = 39.2 bits (90), Expect = 5e-04
Identities = 6/60 (10%), Positives = 21/60 (35%)
Query: 466 NIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFN 525
++ + G G GK++L+ +++ S + + + + + +
Sbjct: 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLS 62
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 36.2 bits (82), Expect = 0.006
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 466 NIGIVGRTGAGKSSLLVAL 484
++G+VG AGKSSLL A+
Sbjct: 3 DVGLVGYPNAGKSSLLAAM 21
Score = 32.3 bits (72), Expect = 0.11
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 526 GIVGRTGAGKSSLLVAL 542
G+VG AGKSSLL A+
Sbjct: 5 GLVGYPNAGKSSLLAAM 21
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli
[TaxId: 562]}
Length = 222
Score = 36.5 bits (83), Expect = 0.006
Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 5/135 (3%)
Query: 438 KFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLVELSSGQIKI 497
KF++++L NW +F ++ + G GAGKS+ + A + +
Sbjct: 3 KFRSLTLI---NW-NGFFARTFDLDELVTT-LSGGNGAGKSTTMAAFVTALIPDLTLLHF 57
Query: 498 DDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 557
+ A + L + V ++ + + ++ + V ++ I
Sbjct: 58 RNTTEAGATSGSRDKGLHGKLKAGVCYSMLDTINSRHQRVVVGVRLQQVAGRDRKVDIKP 117
Query: 558 FDIASVELETLRSRL 572
F I + + ++L
Sbjct: 118 FAIQGLPMSVQPTQL 132
>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 323
Score = 36.8 bits (83), Expect = 0.007
Identities = 49/304 (16%), Positives = 107/304 (35%), Gaps = 7/304 (2%)
Query: 102 FLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFAL 161
F I F +P+LI + + I V + L + + + + +
Sbjct: 17 FATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPP 76
Query: 162 PLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLIS 221
I L S + ++ ++ ++ F V +
Sbjct: 77 IEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVI-----SRVINDVEQT 131
Query: 222 KVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRM 281
K F L +++ + +++ A ++ F+ L L I Y L VF +R+L R
Sbjct: 132 KDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRE 191
Query: 282 ENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRI 341
+ + + + + V G+ ++ F E + + F ++ T + + I
Sbjct: 192 RSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAI 251
Query: 342 DVLAVIAMAII--TGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAV 399
+ + I I+ G +A GS++ + Y + G L+ V F +F ++
Sbjct: 252 NTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASM 311
Query: 400 ERIN 403
+R+
Sbjct: 312 DRVF 315
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 35.3 bits (80), Expect = 0.011
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 466 NIGIVGRTGAGKSSLLVAL 484
++G+VG GKS+LL +
Sbjct: 3 DVGLVGFPSVGKSTLLSVV 21
Score = 32.2 bits (72), Expect = 0.12
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 526 GIVGRTGAGKSSLLVAL 542
G+VG GKS+LL +
Sbjct: 5 GLVGFPSVGKSTLLSVV 21
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 36.3 bits (83), Expect = 0.012
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 466 NIGIVGRTGAGKSSLLVALFRLVELSSGQIKID 498
N+ + G TG+GKSS + L + G K
Sbjct: 58 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTG 90
Score = 35.5 bits (81), Expect = 0.021
Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 7/82 (8%)
Query: 475 AGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAG 534
G+ + + L+EL I + L I + + G TG+G
Sbjct: 16 TGRKIISQEILNLIELRMRAGNIQL------TNSAISDALKEIDSSVLNV-AVTGETGSG 68
Query: 535 KSSLLVALFRLVELSSGQIKID 556
KSS + L + G K
Sbjct: 69 KSSFINTLRGIGNEEEGAAKTG 90
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 35.5 bits (80), Expect = 0.016
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 437 IKFKNVSLRYRDNWPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFR 486
+K + V+++ N+ ++ G N+ I+G+ G+GKSSLL A+
Sbjct: 1 MKLERVTVK---NF-RSHSDTVVEFKEGINL-IIGQNGSGKSSLLDAILV 45
Score = 30.5 bits (67), Expect = 0.70
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 524 FNGIVGRTGAGKSSLLVALFR 544
N I+G+ G+GKSSLL A+
Sbjct: 25 INLIIGQNGSGKSSLLDAILV 45
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 35.0 bits (79), Expect = 0.016
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 461 INHGENIGIVGRTGAGKSSLLVALFR 486
I + IVGR GKS+L A+
Sbjct: 5 ITDAIKVAIVGRPNVGKSTLFNAILN 30
Score = 30.4 bits (67), Expect = 0.50
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 526 GIVGRTGAGKSSLLVALFR 544
IVGR GKS+L A+
Sbjct: 12 AIVGRPNVGKSTLFNAILN 30
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus
[TaxId: 2261]}
Length = 329
Score = 35.0 bits (79), Expect = 0.027
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 502 IASVELETLRS---RLSVIPQDPVLFNGIVGRTGAGKSSLLVAL 542
I +EL+ +S + VIP F IVG G+GKS++ A+
Sbjct: 4 IEKLELKGFKSYGNKKVVIPFSK-GFTAIVGANGSGKSNIGDAI 46
Score = 31.1 bits (69), Expect = 0.45
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 456 NVSFRINHGENIGIVGRTGAGKSSLLVAL 484
V + G IVG G+GKS++ A+
Sbjct: 19 KVVIPFSKGFTA-IVGANGSGKSNIGDAI 46
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 33.9 bits (76), Expect = 0.038
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 467 IGIVGRTGAGKSSLLVALFR 486
I GR+ GKS+L+ L
Sbjct: 3 IIFAGRSNVGKSTLIYRLTG 22
Score = 31.6 bits (70), Expect = 0.20
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 526 GIVGRTGAGKSSLLVALFR 544
GR+ GKS+L+ L
Sbjct: 4 IFAGRSNVGKSTLIYRLTG 22
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 33.5 bits (75), Expect = 0.042
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 467 IGIVGRTGAGKSSLLVALFR 486
I IVGR GKS+LL L
Sbjct: 8 IAIVGRPNVGKSTLLNKLLG 27
Score = 31.6 bits (70), Expect = 0.16
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 524 FNGIVGRTGAGKSSLLVALFR 544
F IVGR GKS+LL L
Sbjct: 7 FIAIVGRPNVGKSTLLNKLLG 27
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 34.3 bits (77), Expect = 0.044
Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 502 IASVELETLRS--RLSVIPQDPVLFNGIVGRTGAGKSSLLVAL 542
+ +EL +S ++ + F I+G G+GKS+++ A+
Sbjct: 3 LVGLELSNFKSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAI 45
Score = 30.1 bits (66), Expect = 0.98
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 468 GIVGRTGAGKSSLLVAL 484
I+G G+GKS+++ A+
Sbjct: 29 SIIGPNGSGKSNMMDAI 45
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 33.6 bits (75), Expect = 0.048
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 502 IASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFR 544
+ E+ + P+ + + GR+ GKSS + +L
Sbjct: 3 VTKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLIN 45
Score = 31.7 bits (70), Expect = 0.22
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 467 IGIVGRTGAGKSSLLVALFR 486
I + GR+ GKSS + +L
Sbjct: 26 IALAGRSNVGKSSFINSLIN 45
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 33.2 bits (74), Expect = 0.054
Identities = 13/21 (61%), Positives = 14/21 (66%)
Query: 464 GENIGIVGRTGAGKSSLLVAL 484
G + I GR AGKSSLL AL
Sbjct: 1 GMKVVIAGRPNAGKSSLLNAL 21
Score = 30.5 bits (67), Expect = 0.37
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 526 GIVGRTGAGKSSLLVAL 542
I GR AGKSSLL AL
Sbjct: 5 VIAGRPNAGKSSLLNAL 21
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 32.8 bits (73), Expect = 0.066
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 467 IGIVGRTGAGKSSLLVALFR 486
+ IVGR GKS+L L +
Sbjct: 3 VLIVGRPNVGKSTLFNKLVK 22
Score = 30.9 bits (68), Expect = 0.29
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 526 GIVGRTGAGKSSLLVALFR 544
IVGR GKS+L L +
Sbjct: 4 LIVGRPNVGKSTLFNKLVK 22
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 32.4 bits (72), Expect = 0.087
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 467 IGIVGRTGAGKSSLLVALFR 486
+ IVG+ GKS+LL L
Sbjct: 8 VAIVGKPNVGKSTLLNNLLG 27
Score = 30.5 bits (67), Expect = 0.45
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 526 GIVGRTGAGKSSLLVALFR 544
IVG+ GKS+LL L
Sbjct: 9 AIVGKPNVGKSTLLNNLLG 27
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 31.9 bits (71), Expect = 0.12
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 466 NIGIVGRTGAGKSSLLVALFR 486
+ IVG+ GKS+LL L
Sbjct: 2 RMVIVGKPNVGKSTLLNRLLN 22
Score = 29.9 bits (66), Expect = 0.56
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 527 IVGRTGAGKSSLLVALFR 544
IVG+ GKS+LL L
Sbjct: 5 IVGKPNVGKSTLLNRLLN 22
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 32.5 bits (73), Expect = 0.14
Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 467 IGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE----LETLRSRLSVIPQDPV 522
+G+ G GAGKS+ L A L+ ++ + D +S + ++R++ + +
Sbjct: 57 LGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEA 116
Query: 523 LFNGIVGRTGAG 534
F V +G
Sbjct: 117 AFIRPVPSSGHL 128
Score = 30.2 bits (67), Expect = 0.78
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVE 564
G+ G GAGKS+ L A L+ ++ + D +S
Sbjct: 58 GVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPV 96
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 32.5 bits (73), Expect = 0.15
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 8/69 (11%)
Query: 467 IGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRL-SVIPQDPVLFN 525
+GI G G GKS+ + AL + +A + ++ +R I D
Sbjct: 54 VGITGVPGVGKSTTIDALGS-------LLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMA 106
Query: 526 GIVGRTGAG 534
+ A
Sbjct: 107 RLAIDRNAF 115
Score = 30.2 bits (67), Expect = 0.69
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 526 GIVGRTGAGKSSLLVALFR 544
GI G G GKS+ + AL
Sbjct: 55 GITGVPGVGKSTTIDALGS 73
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 32.6 bits (73), Expect = 0.15
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 6/34 (17%)
Query: 467 IGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDF 500
IG+VG+ GKS+ A + ++I ++
Sbjct: 3 IGVVGKPNVGKSTFFSA------ATLVDVEIANY 30
Score = 30.7 bits (68), Expect = 0.64
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 6/33 (18%)
Query: 526 GIVGRTGAGKSSLLVALFRLVELSSGQIKIDDF 558
G+VG+ GKS+ A + ++I ++
Sbjct: 4 GVVGKPNVGKSTFFSA------ATLVDVEIANY 30
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId:
2336]}
Length = 308
Score = 32.3 bits (72), Expect = 0.17
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 524 FNGIVGRTGAGKSSLLVAL 542
IVG G+GKS+++ A+
Sbjct: 26 VTAIVGPNGSGKSNIIDAI 44
Score = 28.9 bits (63), Expect = 2.0
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 469 IVGRTGAGKSSLLVAL 484
IVG G+GKS+++ A+
Sbjct: 29 IVGPNGSGKSNIIDAI 44
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 32.1 bits (72), Expect = 0.17
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 466 NIGIVGRTGAGKSSLLVALF 485
I ++G+ G GKSS + ++
Sbjct: 34 TILVMGKGGVGKSSTVNSII 53
Score = 29.4 bits (65), Expect = 1.1
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 506 ELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALF 543
+L L L + + ++G+ G GKSS + ++
Sbjct: 17 KLLELLGNLKQEDVNSLTI-LVMGKGGVGKSSTVNSII 53
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 31.2 bits (69), Expect = 0.26
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 466 NIGIVGRTGAGKSSLLVAL 484
N+GI G GK++L L
Sbjct: 7 NLGIFGHIDHGKTTLSKVL 25
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 30.9 bits (68), Expect = 0.29
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 462 NHGENIGIVGRTGAGKSSLLVALFR 486
+ G + GR+ AGKSS L L
Sbjct: 14 DTGIEVAFAGRSNAGKSSALNTLTN 38
Score = 30.5 bits (67), Expect = 0.43
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 512 SRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFR 544
+ +P D + GR+ AGKSS L L
Sbjct: 6 PDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTN 38
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 31.1 bits (69), Expect = 0.32
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 466 NIGIVGRTGAGKSSLLVAL 484
+ VG +GK+ L V L
Sbjct: 2 AVLFVGLCDSGKTLLFVRL 20
Score = 27.7 bits (60), Expect = 4.5
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 527 IVGRTGAGKSSLLVAL 542
VG +GK+ L V L
Sbjct: 5 FVGLCDSGKTLLFVRL 20
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 30.6 bits (68), Expect = 0.36
Identities = 7/38 (18%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 467 IGIVGRTGAGKSSLLVAL---FRLVELSSGQIKIDDFD 501
+VG +GK++L+ G +K
Sbjct: 4 WQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHG 41
Score = 28.7 bits (63), Expect = 1.4
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 3/37 (8%)
Query: 526 GIVGRTGAGKSSLLVAL---FRLVELSSGQIKIDDFD 559
+VG +GK++L+ G +K
Sbjct: 5 QVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHG 41
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides
[TaxId: 1063]}
Length = 288
Score = 31.1 bits (70), Expect = 0.43
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 467 IGIVGRTGAGKSSL---LVALFRLVELSSGQIKIDDF 500
I + G +GAG S++ +FR + + I+ D F
Sbjct: 7 ISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 43
Score = 28.4 bits (63), Expect = 2.8
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 526 GIVGRTGAGKSSL---LVALFRLVELSSGQIKIDDF 558
+ G +GAG S++ +FR + + I+ D F
Sbjct: 8 SVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 43
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 30.9 bits (69), Expect = 0.44
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 467 IGIVGRTGAGKSSLLVAL 484
GIVG GKS+ A+
Sbjct: 13 TGIVGMPNVGKSTFFRAI 30
Score = 29.0 bits (64), Expect = 1.6
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 526 GIVGRTGAGKSSLLVAL 542
GIVG GKS+ A+
Sbjct: 14 GIVGMPNVGKSTFFRAI 30
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 30.7 bits (69), Expect = 0.45
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 466 NIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD 501
N+G +G GK++L AL + + +++ D+
Sbjct: 5 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYG 40
>d1ne3a_ b.40.4.5 (A:) Ribosomal protein S28e {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 68
Score = 28.4 bits (64), Expect = 0.48
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 413 GRGPITSEFGQVKVKLADWPRQGTIKFKNV 442
R +T E QVK ++ D +G I +NV
Sbjct: 14 KRTGMTGEVMQVKCRILDGRDKGRILTRNV 43
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 31.0 bits (68), Expect = 0.54
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 524 FNGIVGRTGAGKSSLLVAL 542
N I+G+ G+GKSSLL A+
Sbjct: 25 INLIIGQNGSGKSSLLDAI 43
Score = 30.2 bits (66), Expect = 0.92
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 454 LANVSFRINHGENIGIVGRTGAGKSSLLVAL 484
++ G N+ I+G+ G+GKSSLL A+
Sbjct: 14 HSDTVVEFKEGINL-IIGQNGSGKSSLLDAI 43
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 30.0 bits (67), Expect = 0.59
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 466 NIGIVGRTGAGKSSLLVALFRL 487
N+G +G GK++L A+ ++
Sbjct: 5 NVGTIGHVDHGKTTLTAAITKI 26
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter
MsbA, N-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 319
Score = 30.3 bits (66), Expect = 0.68
Identities = 31/303 (10%), Positives = 88/303 (29%), Gaps = 12/303 (3%)
Query: 102 FLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFAL 161
+ + A +++ L L+ F + +L+ L++ + +
Sbjct: 19 IVAGIALILNAASDTFMLSLLKPLLDDGFGK-------TDRSVLLWMPLVVIGLMILRGI 71
Query: 162 PLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLIS 221
I + +S R +F +M M AF + IT ++
Sbjct: 72 TSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLS----RITYDSEQVA 127
Query: 222 KVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRIAVRELKRM 281
+ V + + +M + + + +++ + I V + K M
Sbjct: 128 SSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNM 187
Query: 282 ENVSRSPIFSNVSSTVSGLHIIHVFHKEQDFVRRFCEQYDENSTTLFLCSMAMRWLAVRI 341
+N S ++ +E + R + + S + +
Sbjct: 188 QNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQ 247
Query: 342 DVLAVIAMAII-TGLTVAFHGSVSPALAGLALTYASHVTGLLQFTVRVFVETELNFLAVE 400
+ ++ ++ + S++ + + + L+ V + + A +
Sbjct: 248 LIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQ 307
Query: 401 RIN 403
+
Sbjct: 308 TLF 310
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 30.0 bits (66), Expect = 0.80
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 467 IGIVGRTGAGKSSLLVAL 484
I I G +GK+SLL L
Sbjct: 6 IIIAGPQNSGKTSLLTLL 23
Score = 29.2 bits (64), Expect = 1.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 527 IVGRTGAGKSSLLVAL 542
I G +GK+SLL L
Sbjct: 8 IAGPQNSGKTSLLTLL 23
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 29.9 bits (66), Expect = 0.85
Identities = 21/130 (16%), Positives = 40/130 (30%), Gaps = 11/130 (8%)
Query: 501 DIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDI 560
+ + LE L + P F + G+ G+GK+SL A+F E I ID
Sbjct: 13 NRLNDNLEELIQGKK-AVESPTAFL-LGGQPGSGKTSLRSAIFE--ETQGNVIVID---- 64
Query: 561 ASVELETLRSRLSVIPQDPVLFNGTIRYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSK 620
+ + ++ + R + + ++ + T R+
Sbjct: 65 NDTFKQQHPNFDELVKLYEKDVVKHVT---PYSNRMTEAIISRLSDQGYNLVIEGTGRTT 121
Query: 621 LDSDVQGDQL 630
L
Sbjct: 122 DVPIQTATML 131
>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding
protein 1 (GBP1), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 30.0 bits (67), Expect = 0.94
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 487 LVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFRL 545
L+E ++G++ + E L+ LS I Q P++ IVG GKS L+ L
Sbjct: 7 LIENTNGRLMANP--------EALK-ILSAITQ-PMVVVAIVGLYRTGKSYLMNKLAGK 55
>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 278
Score = 29.5 bits (66), Expect = 1.1
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 466 NIGIVGRTGAGKSSLLVAL 484
GIVG GKS+L AL
Sbjct: 4 KCGIVGLPNVGKSTLFNAL 22
Score = 27.6 bits (61), Expect = 4.8
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 526 GIVGRTGAGKSSLLVAL 542
GIVG GKS+L AL
Sbjct: 6 GIVGLPNVGKSTLFNAL 22
>d1ny4a_ b.40.4.5 (A:) Ribosomal protein S28e {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 71
Score = 27.3 bits (61), Expect = 1.4
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 413 GRGPITSEFGQVKVKLADWPRQGTIKFKNV 442
GR T + QVKV++ + +G + +NV
Sbjct: 16 GRTGTTGDVTQVKVRILEGRDKGRVIRRNV 45
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 29.3 bits (65), Expect = 1.5
Identities = 9/46 (19%), Positives = 19/46 (41%)
Query: 466 NIGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR 511
N+ ++ GKS+L +L + + S + + + E R
Sbjct: 19 NMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQER 64
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 28.8 bits (63), Expect = 1.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 466 NIGIVGRTGAGKSSLLVAL 484
NIG+VG GK++L AL
Sbjct: 7 NIGMVGHVDHGKTTLTKAL 25
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 276
Score = 28.9 bits (64), Expect = 1.6
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 459 FRINHGENIGIVGRTGAGKSSLLVAL 484
+ + NIGI AGK++ +
Sbjct: 1 YDLKRLRNIGIAAHIDAGKTTTTERI 26
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 28.4 bits (62), Expect = 1.9
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 467 IGIVGRTGAGKSSLLVALFRLVE---LSSGQIKIDDFDIASVELETLRSRLSVIPQDPVL 523
+ +G GK++LL L + + G IK D+ + L +
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTI 64
Query: 524 F 524
Sbjct: 65 V 65
Score = 27.6 bits (60), Expect = 3.3
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 5/65 (7%)
Query: 521 PVLFNGIVGRTGAGKSSLLVALFRLVE---LSSGQIKIDDFDIASVELETLRSRLSVIPQ 577
P+L +G GK++LL L + + G IK D+ + L
Sbjct: 3 PLL--AFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGA 60
Query: 578 DPVLF 582
+
Sbjct: 61 AQTIV 65
>d1nh2d2 b.56.1.1 (D:55-121) Small chain TOA2, C-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 67
Score = 26.5 bits (58), Expect = 2.0
Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 445 RYRDN-WPLVLANVSFRINHGENIGIVGRTGAGKSSLLVALFRLV 488
+ D+ W ++ N + +G +S + V R+V
Sbjct: 16 GFCDDVWTFIVKNCQVTVEDSHRDASQNGSGDSQSVISVDKLRIV 60
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase
subunit I {Thermus thermophilus [TaxId: 274]}
Length = 549
Score = 29.2 bits (65), Expect = 2.1
Identities = 14/159 (8%), Positives = 39/159 (24%), Gaps = 20/159 (12%)
Query: 95 MWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICF 154
+ +L I + + H + V F + L +
Sbjct: 334 VAPVLGLLGFIPGGAGGIVNASFTLDYVVHNTAWVPGH------FHLQVASLVTLTAMGS 387
Query: 155 VFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIIT 214
++ L K R +W ++ LL +
Sbjct: 388 LYWLLPN----------LTGKPISDAQRRLGLAVVWLWFLGMMI--MAVGLHWAGLLNVP 435
Query: 215 TLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWF 253
++ Y + ++++L +++ + +
Sbjct: 436 RRAYIAQ--VPDAYPHAAVPMVFNVLAGIVLLVALLLFI 472
Score = 28.4 bits (63), Expect = 3.2
Identities = 13/122 (10%), Positives = 34/122 (27%), Gaps = 4/122 (3%)
Query: 85 LRSTDEVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWS 144
+ D V N + F + + L +L K R +W
Sbjct: 355 SFTLDYVVHNTAWVPGHFHLQVASLVTLTAMGSLYWLLPNLTGKPISDAQRRLGLAVVWL 414
Query: 145 MLFAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFP 204
++ LL + ++ Y + ++++L +++ +
Sbjct: 415 WFLGMMI--MAVGLHWAGLLNVPRRAYIAQ--VPDAYPHAAVPMVFNVLAGIVLLVALLL 470
Query: 205 WF 206
+
Sbjct: 471 FI 472
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 28.4 bits (62), Expect = 2.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 466 NIGIVGRTGAGKSSLLVAL 484
NIG+VG GK++L+ A+
Sbjct: 10 NIGVVGHVDHGKTTLVQAI 28
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 28.1 bits (61), Expect = 2.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 467 IGIVGRTGAGKSSLLVAL 484
I I+G GAGK+++L L
Sbjct: 8 ILILGLDGAGKTTILYRL 25
Score = 27.4 bits (59), Expect = 3.7
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 527 IVGRTGAGKSSLLVAL 542
I+G GAGK+++L L
Sbjct: 10 ILGLDGAGKTTILYRL 25
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 28.0 bits (61), Expect = 3.0
Identities = 20/143 (13%), Positives = 40/143 (27%), Gaps = 13/143 (9%)
Query: 467 IGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELE-------TLRSRLSVIPQ 519
+ VG G+GK++L R +E + ++ + D EL + I +
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMR 61
Query: 520 DPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFD-IASVELETLRSRLSVI--- 575
+ NG + + + + D +E +
Sbjct: 62 EGYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMEN 121
Query: 576 -PQDPVLFNGTIRYNLDPFGRCH 597
P V++ P C
Sbjct: 122 LPYPLVVYISDPEILKKPNDYCF 144
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal
(G) domain {Archaeon Sulfolobus solfataricus [TaxId:
2287]}
Length = 224
Score = 28.3 bits (62), Expect = 3.0
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 466 NIGIVGRTGAGKSSLLVAL 484
N+ ++G GKS+L+ L
Sbjct: 5 NLIVIGHVDHGKSTLVGRL 23
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Length = 348
Score = 28.4 bits (62), Expect = 3.1
Identities = 22/238 (9%), Positives = 58/238 (24%), Gaps = 14/238 (5%)
Query: 5 FLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSVIQNMWSMLFAFLMICFVFPWFAL 64
M+ F L ++ + + L + +V +
Sbjct: 84 LFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPM 143
Query: 65 PLLIITTLYHL------------ISKVFRSVYLRSTDEVFQNMWSMLFAFLMICFVFPWF 112
+ + + + R E Q + + F
Sbjct: 144 SNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESF 203
Query: 113 ALPLLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHL 172
+ + ++ + LI F L + + ++I+ + +
Sbjct: 204 VIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLI 263
Query: 173 ISKVFRSVYLRSVFQNMWSMLFAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLR 230
+ V F+ I F + + +Y +++K FR+ +
Sbjct: 264 CWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPV--IYIMMNKQFRNCMVT 319
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 27.7 bits (60), Expect = 3.1
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 467 IGIVGRTGAGKSSLLVAL 484
+ +G AGK++LL L
Sbjct: 3 LLFLGLDNAGKTTLLHML 20
Score = 27.0 bits (58), Expect = 5.2
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 527 IVGRTGAGKSSLLVAL 542
+G AGK++LL L
Sbjct: 5 FLGLDNAGKTTLLHML 20
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 27.6 bits (61), Expect = 3.3
Identities = 14/99 (14%), Positives = 31/99 (31%), Gaps = 4/99 (4%)
Query: 463 HGENIGIVGRTGAGKSSLLVAL----FRLVELSSGQIKIDDFDIASVELETLRSRLSVIP 518
G + + GR+G GKS + L V + +I + E + + +
Sbjct: 14 FGVGVLLTGRSGIGKSECALDLINKNHLFVGDDAIEIYRLGNRLFGRAQEVAKKFMEIRG 73
Query: 519 QDPVLFNGIVGRTGAGKSSLLVALFRLVELSSGQIKIDD 557
+ G + + + + L+ L +
Sbjct: 74 LGIINVERFYGLQITKQRTEIQLMVNLLSLEKQTTVTFE 112
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 27.7 bits (60), Expect = 3.3
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 467 IGIVGRTGAGKSSLLVAL 484
+ ++G AGK+++L
Sbjct: 5 LLMLGLDNAGKTTILKKF 22
Score = 27.3 bits (59), Expect = 4.3
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 527 IVGRTGAGKSSLLVAL 542
++G AGK+++L
Sbjct: 7 MLGLDNAGKTTILKKF 22
>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
factor ERF2, G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 245
Score = 27.9 bits (61), Expect = 3.6
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 466 NIGIVGRTGAGKSSLLVAL 484
NI +G AGKS+L +
Sbjct: 26 NIVFIGHVDAGKSTLGGNI 44
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 27.9 bits (61), Expect = 3.7
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 466 NIGIVGRTGAGKSSLLVALFR 486
+ +VG G+GK++L AL
Sbjct: 4 TVALVGHAGSGKTTLTEALLY 24
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 27.6 bits (60), Expect = 4.2
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
Query: 467 IGIVGRTGAGKSSL---LVALFRLVELSSGQIKI-----DDF 500
IG+ G T +GKSS+ +V L E+ Q ++ D F
Sbjct: 5 IGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSF 46
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 27.3 bits (59), Expect = 4.4
Identities = 4/18 (22%), Positives = 11/18 (61%)
Query: 467 IGIVGRTGAGKSSLLVAL 484
+ +VG +GK++ + +
Sbjct: 5 LTLVGLQYSGKTTFVNVI 22
Score = 26.6 bits (57), Expect = 7.4
Identities = 4/16 (25%), Positives = 10/16 (62%)
Query: 527 IVGRTGAGKSSLLVAL 542
+VG +GK++ + +
Sbjct: 7 LVGLQYSGKTTFVNVI 22
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 27.6 bits (60), Expect = 5.0
Identities = 10/133 (7%), Positives = 36/133 (27%), Gaps = 4/133 (3%)
Query: 527 IVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQDPVLFNGTI 586
G TG GK+ L+ + + + ++ + +L + + + +
Sbjct: 31 ATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWG-MDFEEMERQNLL 89
Query: 587 RYNLDPFGRCHDTELWDALEKSHLKSKVVTMRSKLDSDVQGDQLSLGEKQLLCLARALLR 646
+ + ++ K + + + +
Sbjct: 90 KIVCAYPESAGLEDHLQIIKSEINDFKPARIA---IDSLSALARGVSNNAFRQFVIGVTG 146
Query: 647 KTKKKKKSGVNIT 659
K+++ +G+
Sbjct: 147 YAKQEEITGLFTN 159
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 277
Score = 27.5 bits (60), Expect = 5.1
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 506 ELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVALFR 544
++ + +L + F + GR G+GKS +
Sbjct: 28 HVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALS 66
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 27.4 bits (59), Expect = 5.1
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 463 HGENIGIVGRTGAGKSSLLVALFR 486
++G GKSS++
Sbjct: 28 RAPITLVLGLRRTGKSSIIKIGIN 51
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 27.2 bits (60), Expect = 5.3
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 463 HGENIGIVGRTGAGKSSLLVAL----FRLV 488
+G + I G +G GKS + L RL+
Sbjct: 13 YGLGVLITGDSGVGKSETALELVQRGHRLI 42
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 26.9 bits (58), Expect = 6.6
Identities = 7/56 (12%), Positives = 18/56 (32%), Gaps = 3/56 (5%)
Query: 467 IGIVGRTGAGKSSL---LVALFRLVELSSGQIKIDDFDIASVELETLRSRLSVIPQ 519
+ + G G G ++ + R ++ + + E L S + +
Sbjct: 4 VVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRK 59
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 27.3 bits (59), Expect = 6.7
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 497 IDDFDIASVELETLRSRLSVIPQDPVLFNGIVGRTGAGKSSLLVAL 542
++ F A L+ + + + +V GAGKS L + L
Sbjct: 9 LEAFAAAPPPLDYVLPNM--VAGTVGA---LVSPGGAGKSMLALQL 49
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 27.0 bits (58), Expect = 6.9
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 467 IGIVGRTGAGKSSLLVAL 484
+ ++G GK++LL +
Sbjct: 8 VSVLGHVDHGKTTLLDHI 25
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase,
transmembrane domain M {Rabbit (Oryctolagus cuniculus)
[TaxId: 9986]}
Length = 472
Score = 27.3 bits (60), Expect = 7.0
Identities = 18/160 (11%), Positives = 48/160 (30%), Gaps = 17/160 (10%)
Query: 50 FAFLMICFVFPWFALPLLIITTLYHLISKVFRSVYLRSTDEVFQNMWSMLFAFLMICFVF 109
+ F + + + + + ++ V Q + C +F
Sbjct: 310 WLFFRYMAIGGYVGAATVGAAAWWFMYAEDGPGVTYHQLTHFMQCTEDHPHFEGLDCEIF 369
Query: 110 PW-----FALPLLIITTLYHLISKVFR--SVYLRSVFQNMWSMLFAFLMICFVFPWFALP 162
AL +L+ + + ++ + S+ + N+W + L + F +
Sbjct: 370 EAPEPMTMALSVLVTIEMCNALNSLSENQSLMRMPPWVNIWLLGSICLSMSLHFLILYVD 429
Query: 163 LLIITTLYHLISKVFRSVYLRSVFQNMWSMLFAFLMICFV 202
L +F+ L + Q + + + +I
Sbjct: 430 PL---------PMIFKLKAL-DLTQWLMVLKISLPVIGLD 459
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 26.6 bits (57), Expect = 7.2
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 467 IGIVGRTGAGKSSLLVALFRLVELSSGQIKIDDFDIASVELETLR 511
+GI G + +GK++L L + + + + D VE
Sbjct: 25 LGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRY 69
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 239
Score = 26.5 bits (58), Expect = 9.7
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 466 NIGIVGRTGAGKSSLLVAL 484
N+ ++G +GKS+ L
Sbjct: 8 NVVVIGHVDSGKSTTTGHL 26
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 26.8 bits (58), Expect = 9.8
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 447 RDNWPLVLANVSFRINHG-ENIGIVGRTGAGKSSLLVAL 484
+ +A V + ++ + G TG GKS LL L
Sbjct: 32 EKAKQVTVAGVPMPRDAEPRHLLVNGATGTGKSVLLREL 70
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 26.2 bits (56), Expect = 10.0
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 466 NIGIVGRTGAGKSSLLVAL 484
+ I+G +GKS L+ L
Sbjct: 9 TVAILGGESSGKSVLVNKL 27
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.332 0.142 0.440
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,481,271
Number of extensions: 115536
Number of successful extensions: 929
Number of sequences better than 10.0: 1
Number of HSP's gapped: 847
Number of HSP's successfully gapped: 248
Length of query: 677
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 586
Effective length of database: 1,158,166
Effective search space: 678685276
Effective search space used: 678685276
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 56 (26.1 bits)