BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8450
(525 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PVL|A Chain A, Structure Of Myosin Viia Myth4-Ferm-Sh3 In Complex With
The Cen1 Of Sans
Length = 655
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 12/147 (8%)
Query: 123 LRDEVYCQLMKQTTSNKTESC-QRGWRLLSIVAAYFTCSDTLRPFLLKYLETAAYDKRRA 181
LRDE+YCQ+ KQ T N ++S RGW L+S+ F S+ +L ++
Sbjct: 173 LRDEIYCQISKQLTHNPSKSSYARGWILVSLCVGCFAPSEKFVKYLRNFIHGGP------ 226
Query: 182 FHGTASVCLQNLRKTLRYGGRKNVPSVEEVTAVSAGRNSKRQLYRLPGGSETVINTKSTT 241
G A C + LR+T G R PS E+ A + + + + G ++T++ T S T
Sbjct: 227 -PGYAPYCEERLRRTFVNGTRTQPPSWLELQATKSKKPIMLPVTFMDGTTKTLL-TDSAT 284
Query: 242 VVEDICIEMCQLINVNNDLEMEEFSLY 268
++C + I++ + FSLY
Sbjct: 285 TARELCNALADKISLKDRF---GFSLY 308
>pdb|3PZD|A Chain A, Structure Of The Myosin X Myth4-FermDCC COMPLEX
Length = 511
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 101/453 (22%), Positives = 185/453 (40%), Gaps = 77/453 (16%)
Query: 107 VKCVYTILMHCHTHEPLRDEVYCQLMKQTTS---NKTESCQRGWRLLSIVAAYFTCSDTL 163
+ + IL H PLRDE+YCQL+KQT + W++L+ ++ F S
Sbjct: 86 IPIIQGILQTGHDLRPLRDELYCQLIKQTNKVPHPGSVGNLYSWQILTCLSCTFLPSRG- 144
Query: 164 RPFLLKYLETAAYDKRRAFHGT-----ASVCLQNLRKTLRYGGRKNVPSVEEVTAVSAGR 218
+LKYL+ R F G+ A ++L+KT R+ VPS +E+ A+ +
Sbjct: 145 ---ILKYLKFHLKRIREQFPGSEMEKYALFTYESLKKT---KCREFVPSRDEIEALIHRQ 198
Query: 219 NSKRQLYRLPGGS-ETVINTKSTT--VVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDA 275
+Y GGS + IN+ +T VVE + I + + N + E++ + ++
Sbjct: 199 EMTSTVYCHGGGSCKITINSHTTAGEVVEKL-IRGLAMEDSRNMFALFEYNGHVDKAIES 257
Query: 276 FTMPLAKEEYILDVTTELHKNQQVFYLIFCRSVWYFPLRLDCQLYVQVLFNQIAPDYLEG 335
T+ + DV + K L V P + +LY + + + D +E
Sbjct: 258 RTV-------VADVLAKFEK------LAATSEVGDLPWKFYFKLYCFLDTDNVPKDSVEF 304
Query: 336 LLLVLPNEQIPQDIVY--------DVAKLAAL----------LHRAADMSHPPAMKETKF 377
+ EQ + +++ ++ LAAL LH A P ++E
Sbjct: 305 AFMF---EQAHEAVIHGHHPAPEENLQVLAALRLQYLQGDYTLHAAI-----PPLEEVYS 356
Query: 378 LLPKPALTQRDIKPA---QWVQ--------MVQSHWTQTAPLHSIQAKAQLLEILSKWPL 426
L A + K W++ + W + ++ QA A+ + ++ +WP
Sbjct: 357 LQRLKARISQSTKTQMLDMWIKEEVSSARASIIDKWRKFQGMNQEQAMAKYMALIKEWPG 416
Query: 427 FGSSFFAI--KRNGDQQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYL 484
+GS+ F + K G Q L L GV + ++ P +V + + L
Sbjct: 417 YGSTLFDVECKEGGFPQELWL---GVSADAVSVYKRGEGRPL-EVFQYEHILSFGAPLAN 472
Query: 485 EMKCGNLFQQRVARIQTDQAHEIARLIRQYMSL 517
K + +R +T + ++A+L++ Y+S+
Sbjct: 473 TYKI--VVDERELLFETSEVVDVAKLMKAYISM 503
>pdb|3AU4|A Chain A, Structure Of The Human Myosin-X Myth4-Ferm Cassette Bound
To Its Specific Cargo, Dcc
pdb|3AU5|A Chain A, Structure Of The Human Myosin-X Myth4-Ferm Cassette
pdb|3AU5|B Chain B, Structure Of The Human Myosin-X Myth4-Ferm Cassette
Length = 555
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 103/463 (22%), Positives = 190/463 (41%), Gaps = 81/463 (17%)
Query: 107 VKCVYTILMHCHTHEPLRDEVYCQLMKQTTS---NKTESCQRGWRLLSIVAAYFTCSDTL 163
+ + IL H PLRDE+YCQL+KQT + W++L+ ++ F S
Sbjct: 103 IPIIQGILQTGHDLRPLRDELYCQLIKQTNKVPHPGSVGNLYSWQILTCLSCTFLPSRG- 161
Query: 164 RPFLLKYLETAAYDKRRAFHGT-----ASVCLQNLRKTLRYGGRKNVPSVEEVTAVSAGR 218
+LKYL+ R F GT A ++L+KT R+ VPS +E+ A+ +
Sbjct: 162 ---ILKYLKFHLKRIREQFPGTEMEKYALFTYESLKKT---KCREFVPSRDEIEALIHRQ 215
Query: 219 NSKRQLYRLPGGS-ETVINTKSTT--VVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDA 275
+Y GGS + IN+ +T VVE + I + + N + E++ + ++
Sbjct: 216 EMTSTVYCHGGGSCKITINSHTTAGEVVEKL-IRGLAMEDSRNMFALFEYNGHVDKAIES 274
Query: 276 FTM---PLAKEEYILDVTTELHKNQQVFYL-IFC--------RSVWYFPLRLDCQLYVQV 323
T+ LAK E L T+E+ FY ++C + F + +
Sbjct: 275 RTVVADVLAKFEK-LAATSEVGDLPWKFYFKLYCFLDTDNVPKDSVEFAFMFEQAHEAVI 333
Query: 324 LFNQIAPD------------YLEG---LLLVLPNEQIPQDIVYDVAKLAALLHRAADMSH 368
+ AP+ YL+G L +P P + VY + +L A + ++
Sbjct: 334 HGHHPAPEENLQVLAALRLQYLQGDYTLHAAIP----PLEEVYSLQRLKARISQSTKT-- 387
Query: 369 PPAMKETKFLLPKPALTQRDIKPAQWVQM------------VQSHWTQTAPLHSIQAKAQ 416
F ++ ++ ++ Q + M + W + ++ QA A+
Sbjct: 388 --------FSFRTGSVVRQKVEEEQMLDMWIKEEVSSARASIIDKWRKFQGMNQEQAMAK 439
Query: 417 LLEILSKWPLFGSSFFAI--KRNGDQQILALNKHGVHFLNLLTHETISSVPYGDVISTRK 474
+ ++ +WP +GS+ F + K G Q L L GV + ++ P +V
Sbjct: 440 YMALIKEWPGYGSTLFDVECKEGGFPQELWL---GVSADAVSVYKRGEGRPL-EVFQYEH 495
Query: 475 VRAESGTLYLEMKCGNLFQQRVARIQTDQAHEIARLIRQYMSL 517
+ + L K + +R +T + ++A+L++ Y+S+
Sbjct: 496 ILSFGAPLANTYKI--VVDERELLFETSEVVDVAKLMKAYISM 536
>pdb|3G9W|A Chain A, Crystal Structure Of Talin2 F2-f3 In Complex With The
Integrin Beta1d Cytoplasmic Tail
pdb|3G9W|B Chain B, Crystal Structure Of Talin2 F2-f3 In Complex With The
Integrin Beta1d Cytoplasmic Tail
Length = 223
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 68/156 (43%), Gaps = 17/156 (10%)
Query: 368 HPPAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLF 427
H P + K LPK + QR + ++ Q H + I+AK + +++ +
Sbjct: 72 HKPGFLDLKEFLPKEYIKQRGAEK----RIFQEH-KNCGEMSEIEAKVKYVKLARSLRTY 126
Query: 428 GSSFFAIKR--NGDQQ----ILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGT 481
G SFF +K G + +L + K V ++ T E + P + + ++ A +
Sbjct: 127 GVSFFLVKEKMKGKNKLVPRLLGITKDSVMRVDEKTKEVLQEWP---LTTVKRWAASPKS 183
Query: 482 LYLEMKCGNLFQQRVARIQTDQAHEIARLIRQYMSL 517
L+ +Q+ +QT + +I++LI Y+ +
Sbjct: 184 FTLDF---GEYQESYYSVQTTEGEQISQLIAGYIDI 216
>pdb|1H4R|B Chain B, Crystal Structure Of The Ferm Domain Of Merlin, The
Neurofibromatosis 2 Tumor Suppressor Protein
Length = 314
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 59/123 (47%), Gaps = 11/123 (8%)
Query: 356 LAALLHRAADMSHPPAMKETKFL-----LPKPALTQRDIKPAQWVQMVQSHWTQTAPLHS 410
LA+ +A + P++ + FL LPK + + P W + + + + +
Sbjct: 142 LASYAVQAKYGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRAR 201
Query: 411 IQAKAQLLEILSKWPLFGSSFFAIK-RNGDQQILALNKHGVHFL---NLLTHETISSVPY 466
+A+ + L+I ++G ++FAI+ + G + +L ++ G+H N LT + S P+
Sbjct: 202 DEAEMEYLKIAQDLEMYGVNYFAIRNKKGTELLLGVDALGLHIYDPENRLTPKI--SFPW 259
Query: 467 GDV 469
++
Sbjct: 260 NEI 262
>pdb|3U8Z|A Chain A, Human Merlin Ferm Domain
pdb|3U8Z|B Chain B, Human Merlin Ferm Domain
pdb|3U8Z|C Chain C, Human Merlin Ferm Domain
pdb|3U8Z|D Chain D, Human Merlin Ferm Domain
Length = 300
Score = 35.0 bits (79), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 59/123 (47%), Gaps = 11/123 (8%)
Query: 356 LAALLHRAADMSHPPAMKETKFL-----LPKPALTQRDIKPAQWVQMVQSHWTQTAPLHS 410
LA+ +A + P++ + FL LPK + + P W + + + + +
Sbjct: 129 LASYAVQAKYGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRAR 188
Query: 411 IQAKAQLLEILSKWPLFGSSFFAIK-RNGDQQILALNKHGVHFL---NLLTHETISSVPY 466
+A+ + L+I ++G ++FAI+ + G + +L ++ G+H N LT + S P+
Sbjct: 189 DEAEMEYLKIAQDLEMYGVNYFAIRNKKGTELLLGVDALGLHIYDPENRLTPKI--SFPW 246
Query: 467 GDV 469
++
Sbjct: 247 NEI 249
>pdb|1H4R|A Chain A, Crystal Structure Of The Ferm Domain Of Merlin, The
Neurofibromatosis 2 Tumor Suppressor Protein
Length = 314
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 59/123 (47%), Gaps = 11/123 (8%)
Query: 356 LAALLHRAADMSHPPAMKETKFL-----LPKPALTQRDIKPAQWVQMVQSHWTQTAPLHS 410
LA+ +A + P++ + FL LPK + + P W + + + + +
Sbjct: 142 LASYAVQAKYGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRAR 201
Query: 411 IQAKAQLLEILSKWPLFGSSFFAIK-RNGDQQILALNKHGVHFL---NLLTHETISSVPY 466
+A+ + L+I ++G ++FAI+ + G + +L ++ G+H N LT + S P+
Sbjct: 202 DEAEMEYLKIAQDLEMYGVNYFAIRNKKGTELLLGVDALGLHIYDPENRLTPKI--SFPW 259
Query: 467 GDV 469
++
Sbjct: 260 NEI 262
>pdb|2HEK|A Chain A, Crystal Structure Of O67745, A Hypothetical Protein From
Aquifex Aeolicus At 2.0 A Resolution.
pdb|2HEK|B Chain B, Crystal Structure Of O67745, A Hypothetical Protein From
Aquifex Aeolicus At 2.0 A Resolution
Length = 371
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Query: 352 DVAKLAALLHRAADMSHPPAMKETKFLLPKPA----LTQRDIKPAQWVQMVQSHWTQ 404
++ KLA LLH D+ HPP T+ LLP+ T+R IK + ++++ ++
Sbjct: 75 ELVKLAGLLH---DLGHPPFSHTTEVLLPRERSHEDFTERVIKETEIYEILKQDYSH 128
>pdb|1MIX|A Chain A, Crystal Structure Of A Ferm Domain Of Talin
Length = 206
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 69/159 (43%), Gaps = 18/159 (11%)
Query: 365 DMSHPPAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKW 424
+ H P E K LPK + Q+ + ++ +H + I+AK + +++
Sbjct: 58 EQKHKPGFLELKDFLPKEYIKQKGER-----KIFMAH-KNCGNMSEIEAKVRYVKLARSL 111
Query: 425 PLFGSSFFAIKR--NGDQQ----ILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAE 478
+G SFF +K G + +L + K V ++ T E I + + ++ A
Sbjct: 112 KTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEW---SLTNIKRWAAS 168
Query: 479 SGTLYLEMKCGNLFQQRVARIQTDQAHEIARLIRQYMSL 517
+ L+ G+ +Q +QT + +IA+LI Y+ +
Sbjct: 169 PKSFTLDF--GD-YQDGYYSVQTTEGEQIAQLIAGYIDI 204
>pdb|1MK7|B Chain B, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK7|D Chain D, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|B Chain B, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|D Chain D, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|F Chain F, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|H Chain H, Crystal Structure Of An Integrin Beta3-Talin Chimera
Length = 192
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 69/159 (43%), Gaps = 18/159 (11%)
Query: 365 DMSHPPAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKW 424
+ H P E K LPK + Q+ + ++ +H + I+AK + +++
Sbjct: 44 EQKHKPGFLELKDFLPKEYIKQKGER-----KIFMAH-KNCGNMSEIEAKVRYVKLARSL 97
Query: 425 PLFGSSFFAIKR--NGDQQ----ILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAE 478
+G SFF +K G + +L + K V ++ T E I + + ++ A
Sbjct: 98 KTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEW---SLTNIKRWAAS 154
Query: 479 SGTLYLEMKCGNLFQQRVARIQTDQAHEIARLIRQYMSL 517
+ L+ G+ +Q +QT + +IA+LI Y+ +
Sbjct: 155 PKSFTLDF--GD-YQDGYYSVQTTEGEQIAQLIAGYIDI 190
>pdb|1MIZ|B Chain B, Crystal Structure Of An Integrin Beta3-Talin Chimera
Length = 201
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 69/159 (43%), Gaps = 18/159 (11%)
Query: 365 DMSHPPAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKW 424
+ H P E K LPK + Q+ + ++ +H + I+AK + +++
Sbjct: 53 EQKHKPGFLELKDFLPKEYIKQKGER-----KIFMAH-KNCGNMSEIEAKVRYVKLARSL 106
Query: 425 PLFGSSFFAIKR--NGDQQ----ILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAE 478
+G SFF +K G + +L + K V ++ T E I + + ++ A
Sbjct: 107 KTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEW---SLTNIKRWAAS 163
Query: 479 SGTLYLEMKCGNLFQQRVARIQTDQAHEIARLIRQYMSL 517
+ L+ G+ +Q +QT + +IA+LI Y+ +
Sbjct: 164 PKSFTLDF--GD-YQDGYYSVQTTEGEQIAQLIAGYIDI 199
>pdb|1ISN|A Chain A, Crystal Structure Of Merlin Ferm Domain
Length = 323
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 378 LLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLFGSSFFAIK-R 436
LLPK + + P W + + + + + +A+ + L+I ++G ++F I+ +
Sbjct: 151 LLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFTIRNK 210
Query: 437 NGDQQILALNKHGVHFL---NLLTHETISSVPYGDV 469
G + +L ++ G+H N LT + S P+ ++
Sbjct: 211 KGTELLLGVDALGLHIYDPENRLTPKI--SFPWNEI 244
>pdb|2EMT|A Chain A, Crystal Structure Analysis Of The Radixin Ferm Domain
Complexed With Adhesion Molecule Psgl-1
pdb|2EMT|B Chain B, Crystal Structure Analysis Of The Radixin Ferm Domain
Complexed With Adhesion Molecule Psgl-1
pdb|2EMS|A Chain A, Crystal Structure Analysis Of The Radixin Ferm Domain
Complexed With Adhesion Molecule Cd43
Length = 322
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 368 HPPAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLF 427
H P LLP+ L Q + QW + +Q+ + + + + L+I ++
Sbjct: 144 HKPGYLANDRLLPQRVLEQHKLTKEQWEERIQNWHEEHRGMLREDSMMEYLKIAQDLEMY 203
Query: 428 GSSFFAIK-RNGDQQILALNKHGVHFLNLLTHE 459
G ++F IK + G + L ++ G LN+ H+
Sbjct: 204 GVNYFEIKNKKGTELWLGVDALG---LNIYEHD 233
>pdb|1J19|A Chain A, Crystal Structure Of The Radxin Ferm Domain Complexed With
The Icam-2 Cytoplasmic Peptide
Length = 317
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 368 HPPAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLF 427
H P LLP+ L Q + QW + +Q+ + + + + L+I ++
Sbjct: 142 HKPGYLANDRLLPQRVLEQHKLTKEQWEERIQNWHEEHRGMLREDSMMEYLKIAQDLEMY 201
Query: 428 GSSFFAIK-RNGDQQILALNKHGVHFLNLLTHE 459
G ++F IK + G + L ++ G LN+ H+
Sbjct: 202 GVNYFEIKNKKGTELWLGVDALG---LNIYEHD 231
>pdb|1GC6|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With Inositol-(1,4,5)-Triphosphate
pdb|1GC7|A Chain A, Crystal Structure Of The Radixin Ferm Domain
Length = 297
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 368 HPPAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLF 427
H P LLP+ L Q + QW + +Q+ + + + + L+I ++
Sbjct: 142 HKPGYLANDRLLPQRVLEQHKLTKEQWEERIQNWHEEHRGMLREDSMMEYLKIAQDLEMY 201
Query: 428 GSSFFAIK-RNGDQQILALNKHGVHFLNLLTHE 459
G ++F IK + G + L ++ G LN+ H+
Sbjct: 202 GVNYFEIKNKKGTELWLGVDALG---LNIYEHD 231
>pdb|2D10|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D10|B Chain B, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D10|C Chain C, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D10|D Chain D, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D11|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2D11|B Chain B, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2D11|C Chain C, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2D11|D Chain D, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2YVC|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nep Cytoplasmic Tail
pdb|2YVC|B Chain B, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nep Cytoplasmic Tail
pdb|2YVC|C Chain C, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nep Cytoplasmic Tail
Length = 312
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 368 HPPAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLF 427
H P LLP+ L Q + QW + +Q+ + + + + L+I ++
Sbjct: 144 HKPGYLANDRLLPQRVLEQHKLTKEQWEERIQNWHEEHRGMLREDSMMEYLKIAQDLEMY 203
Query: 428 GSSFFAIK-RNGDQQILALNKHGVHFLNLLTHE 459
G ++F IK + G + L ++ G LN+ H+
Sbjct: 204 GVNYFEIKNKKGTELWLGVDALG---LNIYEHD 233
>pdb|2D2Q|A Chain A, Crystal Structure Of The Dimerized Radixin Ferm Domain
pdb|2D2Q|B Chain B, Crystal Structure Of The Dimerized Radixin Ferm Domain
Length = 310
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 368 HPPAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLF 427
H P LLP+ L Q + QW + +Q+ + + + + L+I ++
Sbjct: 142 HKPGYLANDRLLPQRVLEQHKLTKEQWEERIQNWHEEHRGMLREDSMMEYLKIAQDLEMY 201
Query: 428 GSSFFAIK-RNGDQQILALNKHGVHFLNLLTHE 459
G ++F IK + G + L ++ G LN+ H+
Sbjct: 202 GVNYFEIKNKKGTELWLGVDALG---LNIYEHD 231
>pdb|2ZPY|A Chain A, Crystal Structure Of The Mouse Radxin Ferm Domain
Complexed With The Mouse Cd44 Cytoplasmic Peptide
Length = 312
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 368 HPPAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLF 427
H P LLP+ L Q + QW + +Q+ + + + + L+I ++
Sbjct: 144 HKPGYLANDRLLPQRVLEQHKLTKEQWEERIQNWHEEHRGMLREDSMMEYLKIAQDLEMY 203
Query: 428 GSSFFAIK-RNGDQQILALNKHGVHFLNLLTHE 459
G ++F IK + G + L ++ G LN+ H+
Sbjct: 204 GVNYFEIKNKKGTELWLGVDALG---LNIYEHD 233
>pdb|1SGH|A Chain A, Moesin Ferm Domain Bound To Ebp50 C-Terminal Peptide
Length = 297
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/149 (20%), Positives = 60/149 (40%), Gaps = 10/149 (6%)
Query: 313 LRLDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRAADMS----- 367
+ + Y + + ++ D + L + E I D +Y + A LL A S
Sbjct: 78 FKFRAKFYPEDVSEELIQDITQRLFFLQVKEGILNDDIYCPPETAVLLASYAVQSKYGDF 137
Query: 368 ----HPPAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSK 423
H LLP+ L Q + QW + +Q + + A + L+I
Sbjct: 138 NKEVHKSGYLAGDKLLPQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKIAQD 197
Query: 424 WPLFGSSFFAIK-RNGDQQILALNKHGVH 451
++G ++F+IK + G + L ++ G++
Sbjct: 198 LEMYGVNYFSIKNKKGSELWLGVDALGLN 226
>pdb|3P73|A Chain A, Crystal Structures Of The Chicken Yf17.1 Molecule
pdb|3P77|A Chain A, Crystal Structures Of The Chicken Yf17.1 Molecule
Length = 275
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 157 FTCSDTLRPFLLKYLETAAYDKRRAFHGTASVCLQNLRKTLRYG 200
FT +D + + ET R H +VC+QNLR+ L +G
Sbjct: 131 FTAADPVAEITKRRWETEGTYAERWKHELGTVCVQNLRRYLEHG 174
>pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And First Long Helix Of
Moesin
Length = 346
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/149 (20%), Positives = 60/149 (40%), Gaps = 10/149 (6%)
Query: 313 LRLDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRAADMS----- 367
+ + Y + + ++ D + L + E I D +Y + A LL A S
Sbjct: 78 FKFRAKFYPEDVSEELIQDITQRLFFLQVKEGILNDDIYCPPETAVLLASYAVQSKYGDF 137
Query: 368 ----HPPAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSK 423
H LLP+ L Q + QW + +Q + + A + L+I
Sbjct: 138 NKEVHKSGYLAGDKLLPQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKIAQD 197
Query: 424 WPLFGSSFFAIK-RNGDQQILALNKHGVH 451
++G ++F+IK + G + L ++ G++
Sbjct: 198 LEMYGVNYFSIKNKKGSELWLGVDALGLN 226
>pdb|3IVF|A Chain A, Crystal Structure Of The Talin Head Ferm Domain
Length = 371
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 69/159 (43%), Gaps = 18/159 (11%)
Query: 365 DMSHPPAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKW 424
+ H + K LPK + Q+ + ++ Q+H + I+AK + +++
Sbjct: 223 EQKHKAGFLDLKDFLPKEYVKQKGER-----KIFQAH-KNCGQMSEIEAKVRYVKLARSL 276
Query: 425 PLFGSSFFAIKR--NGDQQ----ILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAE 478
+G SFF +K G + +L + K V ++ T E I ++ ++ A
Sbjct: 277 KTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNI---KRWAAS 333
Query: 479 SGTLYLEMKCGNLFQQRVARIQTDQAHEIARLIRQYMSL 517
+ L+ G+ +Q +QT + +IA+LI Y+ +
Sbjct: 334 PKSFTLDF--GD-YQDGYYSVQTTEGEQIAQLIAGYIDI 369
>pdb|4F7G|A Chain A, Crystal Structure Of Talin Autoinhibition Complex
Length = 222
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 69/159 (43%), Gaps = 18/159 (11%)
Query: 365 DMSHPPAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKW 424
+ H + K LPK + Q+ + ++ Q+H + I+AK + +++
Sbjct: 69 EQKHKAGFLDLKDFLPKEYVKQKGER-----KIFQAH-KNCGQMSEIEAKVRYVKLARSL 122
Query: 425 PLFGSSFFAIKR--NGDQQ----ILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAE 478
+G SFF +K G + +L + K V ++ T E I + + ++ A
Sbjct: 123 KTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWS---LTNIKRWAAS 179
Query: 479 SGTLYLEMKCGNLFQQRVARIQTDQAHEIARLIRQYMSL 517
+ L+ G+ +Q +QT + +IA+LI Y+ +
Sbjct: 180 PKSFTLDF--GD-YQDGYYSVQTTEGEQIAQLIAGYIDI 215
>pdb|1Y19|B Chain B, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|D Chain D, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|F Chain F, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|H Chain H, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|J Chain J, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|L Chain L, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
Length = 202
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 67/159 (42%), Gaps = 18/159 (11%)
Query: 365 DMSHPPAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKW 424
+ H + K LPK + Q+ + ++ Q+H + I+AK + +++
Sbjct: 44 EQKHKAGFLDLKDFLPKEYVKQKGER-----KIFQAH-KNCGQMSEIEAKVRYVKLARSL 97
Query: 425 PLFGSSFFAIKR--NGDQQ----ILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAE 478
+G SFF +K G + +L + K V ++ T E I + + ++ A
Sbjct: 98 KTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEW---SLTNIKRWAAS 154
Query: 479 SGTLYLEMKCGNLFQQRVARIQTDQAHEIARLIRQYMSL 517
+ L+ +Q +QT + +IA+LI Y+ +
Sbjct: 155 PKSFTLDF---GDYQDGYYSVQTTEGEQIAQLIAGYIDI 190
>pdb|2I1J|A Chain A, Moesin From Spodoptera Frugiperda At 2.1 Angstroms
Resolution
pdb|2I1K|A Chain A, Moesin From Spodoptera Frugiperda Reveals The Coiled-Coil
Domain At 3.0 Angstrom Resolution
Length = 575
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 368 HPPAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLF 427
H P LLP+ Q + +W Q + + W + + A + L+I ++
Sbjct: 142 HGPGFLANDRLLPQRVTDQHKMSREEWEQSITNWWQEHRGMLREDAMMEYLKIAQDLEMY 201
Query: 428 GSSFFAIKRNGDQQILALNKHGVHFLNLLTHE 459
G ++F I RN L L GV L L +E
Sbjct: 202 GVNYFEI-RNKKNTELWL---GVDALGLNIYE 229
>pdb|2ZKT|A Chain A, Structure Of Ph0037 Protein From Pyrococcus Horikoshii
pdb|2ZKT|B Chain B, Structure Of Ph0037 Protein From Pyrococcus Horikoshii
Length = 412
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 483 YLEMKCGNLFQQRVARIQTDQAHEIARLIRQYMSL 517
+ ++ G + +R RI T++AHE+AR I++ + +
Sbjct: 102 FATLENGIITDRRAGRISTEEAHELARAIQEEVDI 136
>pdb|1EF1|A Chain A, Crystal Structure Of The Moesin Ferm DomainTAIL DOMAIN
COMPLEX
pdb|1EF1|B Chain B, Crystal Structure Of The Moesin Ferm DomainTAIL DOMAIN
COMPLEX
Length = 294
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 31/149 (20%), Positives = 58/149 (38%), Gaps = 10/149 (6%)
Query: 313 LRLDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRAADMS----- 367
+ + Y + + ++ D + L + E I D +Y + A LL A S
Sbjct: 75 FKFRAKFYPEDVSEELIQDITQRLFFLQVKEGILNDDIYCPPETAVLLASYAVQSKYGDF 134
Query: 368 ----HPPAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSK 423
H LLP+ L Q + QW + +Q + A + L+I
Sbjct: 135 NKEVHKSGYLAGDKLLPQRVLEQHKLNKDQWEERIQVWHEEHRGXLREDAVLEYLKIAQD 194
Query: 424 WPLFGSSFFAIK-RNGDQQILALNKHGVH 451
+G ++F+IK + G + L ++ G++
Sbjct: 195 LEXYGVNYFSIKNKKGSELWLGVDALGLN 223
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,687,991
Number of Sequences: 62578
Number of extensions: 556748
Number of successful extensions: 980
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 953
Number of HSP's gapped (non-prelim): 33
length of query: 525
length of database: 14,973,337
effective HSP length: 103
effective length of query: 422
effective length of database: 8,527,803
effective search space: 3598732866
effective search space used: 3598732866
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)