Query psy8450
Match_columns 525
No_of_seqs 259 out of 1131
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 19:11:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8450.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8450hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00139 MyTH4 Domain in Myo 100.0 5.7E-43 1.2E-47 311.0 13.2 142 64-215 1-144 (144)
2 KOG0248|consensus 100.0 4.7E-37 1E-41 314.9 18.5 376 59-521 489-900 (936)
3 PF00784 MyTH4: MyTH4 domain; 100.0 3.5E-33 7.5E-38 239.9 7.5 110 106-215 2-114 (114)
4 smart00295 B41 Band 4.1 homolo 100.0 6.3E-28 1.4E-32 230.1 17.9 198 218-432 2-207 (207)
5 KOG3530|consensus 99.9 4.4E-24 9.5E-29 218.9 21.9 261 219-511 10-281 (616)
6 KOG4261|consensus 99.8 3.1E-22 6.7E-27 208.9 3.1 274 225-522 89-401 (1003)
7 KOG3552|consensus 99.8 4E-21 8.6E-26 203.6 7.0 307 196-522 164-499 (1298)
8 KOG3529|consensus 99.8 1.5E-18 3.2E-23 185.1 9.5 237 218-472 12-257 (596)
9 PF00373 FERM_M: FERM central 99.7 9.6E-18 2.1E-22 146.9 11.5 111 311-432 1-126 (126)
10 KOG0792|consensus 99.7 1.2E-16 2.5E-21 173.8 16.8 235 220-472 23-263 (1144)
11 KOG3527|consensus 99.6 7.2E-15 1.6E-19 156.7 14.9 265 217-516 29-304 (975)
12 KOG4257|consensus 99.5 1E-13 2.2E-18 144.1 11.6 284 225-520 7-325 (974)
13 KOG3784|consensus 99.1 6.8E-09 1.5E-13 103.4 17.9 234 223-518 110-359 (407)
14 PF09379 FERM_N: FERM N-termin 99.0 8.3E-10 1.8E-14 88.5 7.7 80 225-310 1-80 (80)
15 cd01787 GRB7_RA RA (RAS-associ 98.9 4.4E-09 9.5E-14 83.1 8.3 81 221-306 4-84 (85)
16 KOG3531|consensus 98.5 4.8E-08 1E-12 104.8 4.1 225 218-471 38-268 (1036)
17 PF00788 RA: Ras association ( 98.5 8E-07 1.7E-11 73.1 8.9 84 221-307 4-91 (93)
18 KOG3727|consensus 98.5 2E-07 4.4E-12 96.2 6.2 125 388-516 513-639 (664)
19 cd01768 RA RA (Ras-associating 98.3 3.7E-06 7.9E-11 68.4 9.0 77 229-307 11-87 (87)
20 smart00314 RA Ras association 98.2 4.9E-06 1.1E-10 68.2 8.0 77 228-307 13-89 (90)
21 cd00836 FERM_C FERM_C domain. 98.2 1.7E-05 3.6E-10 65.3 11.2 81 426-513 1-83 (92)
22 cd01776 Rin1_RA Ubiquitin doma 97.8 0.00011 2.4E-09 57.0 7.3 74 228-306 11-86 (87)
23 KOG4229|consensus 97.6 1.5E-07 3.2E-12 106.6 -15.1 153 60-215 81-241 (1062)
24 cd01777 SNX27_RA Ubiquitin dom 97.5 0.00015 3.2E-09 57.6 5.0 61 222-285 4-64 (87)
25 PF02174 IRS: PTB domain (IRS- 97.4 0.0021 4.6E-08 53.6 10.7 75 440-519 23-99 (100)
26 cd01778 RASSF1_RA Ubiquitin-li 97.3 0.0007 1.5E-08 55.0 6.8 60 225-286 11-72 (96)
27 KOG3751|consensus 97.2 0.00066 1.4E-08 70.4 6.7 84 220-308 189-272 (622)
28 cd01203 DOK_PTB Downstream of 97.2 0.0052 1.1E-07 50.7 10.2 76 440-520 22-99 (104)
29 cd00824 PTBI IRS-like phosphot 97.1 0.0048 1E-07 51.5 9.3 77 440-521 22-100 (104)
30 KOG4371|consensus 97.0 0.00047 1E-08 76.5 3.1 213 244-472 531-772 (1332)
31 cd01784 rasfadin_RA Ubiquitin- 96.9 0.003 6.5E-08 50.0 6.4 58 225-285 6-64 (87)
32 PF09380 FERM_C: FERM C-termin 96.8 0.014 2.9E-07 47.7 9.6 74 440-518 6-79 (90)
33 smart00310 PTBI Phosphotyrosin 96.7 0.012 2.7E-07 48.4 8.8 75 440-519 21-97 (98)
34 cd01760 RBD Ubiquitin-like dom 96.6 0.0054 1.2E-07 47.6 5.7 58 225-288 4-61 (72)
35 cd01781 AF6_RA_repeat2 Ubiquit 96.5 0.02 4.4E-07 47.1 8.6 79 228-307 13-100 (100)
36 cd01783 DAGK_delta_RA Ubiquiti 96.1 0.048 1E-06 44.6 8.5 66 229-295 15-81 (97)
37 cd01216 Fe65 Fe65 Phosphotyros 95.5 0.14 3.1E-06 44.3 10.1 81 440-522 41-122 (123)
38 cd01818 TIAM1_RBD Ubiquitin do 95.5 0.037 7.9E-07 42.8 5.4 63 225-291 4-69 (77)
39 PF14847 Ras_bdg_2: Ras-bindin 95.5 0.053 1.1E-06 45.4 6.8 79 224-306 4-85 (105)
40 PF10480 ICAP-1_inte_bdg: Beta 95.5 0.12 2.6E-06 47.2 9.5 100 414-521 88-197 (200)
41 cd01202 FRS2 Fibroblast growth 95.3 0.18 4E-06 41.3 9.1 86 429-521 5-98 (102)
42 PF00640 PID: Phosphotyrosine 95.2 0.23 5.1E-06 43.6 10.8 80 440-520 53-135 (140)
43 cd01267 CED6_AIDA1b Phosphotyr 95.0 0.24 5.3E-06 43.4 10.1 79 439-519 45-128 (132)
44 cd01782 AF6_RA_repeat1 Ubiquit 94.9 0.088 1.9E-06 43.6 6.3 50 233-286 38-91 (112)
45 cd00435 ACBP Acyl CoA binding 94.8 0.19 4E-06 40.5 7.9 63 349-428 20-85 (85)
46 smart00455 RBD Raf-like Ras-bi 94.7 0.083 1.8E-06 40.9 5.5 43 225-271 4-46 (70)
47 cd01817 RGS12_RBD Ubiquitin do 94.4 0.12 2.7E-06 39.9 5.7 45 222-271 2-46 (73)
48 cd00934 PTB Phosphotyrosine-bi 94.2 0.36 7.8E-06 41.3 9.2 75 439-516 42-120 (123)
49 KOG4239|consensus 94.0 0.098 2.1E-06 51.3 5.5 69 201-272 179-253 (348)
50 cd01775 CYR1_RA Ubiquitin doma 93.9 0.5 1.1E-05 38.6 8.5 67 220-292 3-69 (97)
51 cd01273 CED-6 CED-6 Phosphotyr 93.8 0.59 1.3E-05 41.6 9.8 78 439-518 55-136 (142)
52 PF02196 RBD: Raf-like Ras-bin 93.6 0.21 4.6E-06 38.7 5.8 43 225-271 5-47 (71)
53 KOG4335|consensus 93.4 0.011 2.3E-07 61.5 -2.3 170 288-470 311-509 (558)
54 cd01215 Dab Disabled (Dab) Pho 93.1 0.78 1.7E-05 40.4 9.0 79 440-520 54-134 (139)
55 cd01269 PLX Pollux (PLX) Phosp 92.9 0.48 1E-05 40.4 7.2 71 440-512 44-122 (129)
56 cd01779 Myosin_IXb_RA ubitquit 92.9 0.44 9.5E-06 38.4 6.6 52 232-286 26-77 (105)
57 smart00462 PTB Phosphotyrosine 92.9 0.82 1.8E-05 39.8 9.3 82 440-521 45-127 (134)
58 cd01785 PDZ_GEF_RA Ubiquitin-l 92.0 0.77 1.7E-05 35.7 6.7 46 223-271 6-51 (85)
59 cd01208 X11 X11 Phosphotyrosin 91.4 1.7 3.6E-05 38.9 9.2 74 440-517 51-145 (156)
60 cd01268 Numb Numb Phosphotyros 90.9 1.7 3.6E-05 38.4 8.6 76 438-515 49-128 (138)
61 KOG4229|consensus 90.3 0.35 7.5E-06 56.1 4.9 256 189-470 580-858 (1062)
62 PF08416 PTB: Phosphotyrosine- 90.2 1.9 4E-05 37.8 8.4 80 440-519 41-125 (131)
63 KOG1574|consensus 90.1 0.79 1.7E-05 46.4 6.6 64 225-295 10-73 (375)
64 PF00887 ACBP: Acyl CoA bindin 89.8 1.2 2.7E-05 35.9 6.5 58 349-423 22-81 (87)
65 cd01274 AIDA-1b AIDA-1b Phosph 89.4 2.4 5.2E-05 36.9 8.4 76 439-516 41-120 (127)
66 PTZ00458 acyl CoA binding prot 89.0 2.8 6.1E-05 34.1 7.9 62 349-427 22-86 (90)
67 PF11470 TUG-UBL1: GLUT4 regul 88.4 1 2.2E-05 34.2 4.7 39 227-269 3-41 (65)
68 cd01786 STE50_RA Ubiquitin-lik 87.1 3 6.4E-05 33.6 6.7 71 233-307 27-98 (98)
69 KOG1117|consensus 86.5 2 4.3E-05 48.0 7.3 78 227-306 937-1014(1186)
70 cd00196 UBQ Ubiquitin-like pro 85.8 1.9 4.1E-05 30.7 5.0 41 226-270 3-43 (69)
71 cd01270 DYC-1 DYC-1 (DYB-1 bin 85.6 5.4 0.00012 35.2 8.3 74 440-513 44-132 (140)
72 KOG0817|consensus 85.1 2.9 6.3E-05 37.0 6.5 68 349-434 24-95 (142)
73 cd01212 JIP JNK-interacting pr 83.8 7.3 0.00016 34.9 8.5 78 439-517 45-130 (148)
74 KOG4335|consensus 82.7 1.4 3E-05 46.3 4.0 165 300-474 198-408 (558)
75 cd01210 EPS8 Epidermal growth 81.9 6.8 0.00015 33.9 7.2 76 440-515 43-123 (127)
76 KOG3535|consensus 80.5 5.8 0.00013 40.8 7.3 78 440-519 93-171 (557)
77 cd01209 SHC SHC phosphotyrosin 80.4 8.3 0.00018 34.7 7.5 77 440-517 76-155 (160)
78 PF06115 DUF956: Domain of unk 79.9 6.2 0.00013 33.5 6.1 72 440-516 26-99 (118)
79 PF11543 UN_NPL4: Nuclear pore 79.9 2.7 6E-05 33.3 3.9 47 219-271 4-50 (80)
80 cd01272 FE65_N Fe65 Phosphotyr 77.8 17 0.00036 31.6 8.1 80 440-520 54-135 (138)
81 cd01807 GDX_N ubiquitin-like d 77.7 6.4 0.00014 30.4 5.5 41 225-269 5-45 (74)
82 cd01780 PLC_epsilon_RA Ubiquit 76.1 15 0.00032 29.8 7.0 67 227-294 9-83 (93)
83 cd01794 DC_UbP_C dendritic cel 76.0 5.7 0.00012 30.6 4.6 54 225-288 3-56 (70)
84 cd01798 parkin_N amino-termina 75.2 6.6 0.00014 30.0 4.8 54 225-288 3-56 (70)
85 cd01770 p47_UBX p47-like ubiqu 74.5 15 0.00033 29.0 6.8 49 219-270 3-51 (79)
86 cd01816 Raf_RBD Ubiquitin doma 74.0 9.3 0.0002 29.6 5.1 43 225-271 4-46 (74)
87 COG4281 ACB Acyl-CoA-binding p 72.8 16 0.00035 28.3 6.1 77 322-425 3-82 (87)
88 cd01810 ISG15_repeat2 ISG15 ub 71.1 12 0.00026 28.9 5.5 41 225-269 3-43 (74)
89 PF00564 PB1: PB1 domain; Int 70.2 50 0.0011 25.8 9.7 75 225-304 6-81 (84)
90 smart00666 PB1 PB1 domain. Pho 69.4 51 0.0011 25.6 9.4 65 222-293 4-68 (81)
91 cd06408 PB1_NoxR The PB1 domai 67.4 25 0.00055 28.3 6.5 48 220-274 3-50 (86)
92 PTZ00044 ubiquitin; Provisiona 66.4 14 0.0003 28.5 5.0 41 225-269 5-45 (76)
93 cd01796 DDI1_N DNA damage indu 65.9 12 0.00027 28.7 4.5 41 225-269 3-44 (71)
94 PF00789 UBX: UBX domain; Int 65.3 25 0.00055 27.6 6.4 44 224-270 10-53 (82)
95 cd06409 PB1_MUG70 The MUG70 pr 63.8 30 0.00064 27.9 6.3 62 227-290 7-68 (86)
96 cd01804 midnolin_N Ubiquitin-l 62.6 20 0.00043 28.1 5.2 35 225-259 6-40 (78)
97 cd01806 Nedd8 Nebb8-like ubiq 62.3 16 0.00035 28.0 4.7 41 225-269 5-45 (76)
98 PF00240 ubiquitin: Ubiquitin 61.7 13 0.00027 28.1 3.9 38 228-269 3-40 (69)
99 cd01211 GAPCenA GAPCenA Phosph 61.5 91 0.002 26.9 9.1 77 441-517 41-123 (125)
100 PF11976 Rad60-SLD: Ubiquitin- 60.8 27 0.00059 26.5 5.7 42 225-269 5-46 (72)
101 KOG4371|consensus 60.5 8 0.00017 44.4 3.4 114 225-363 42-173 (1332)
102 PF06017 Myosin_TH1: Myosin ta 59.9 44 0.00094 31.4 8.0 73 440-517 67-145 (199)
103 cd01803 Ubiquitin Ubiquitin. U 59.8 20 0.00043 27.5 4.8 41 225-269 5-45 (76)
104 COG4687 Uncharacterized protei 59.5 28 0.00061 29.2 5.6 71 440-516 26-98 (122)
105 smart00166 UBX Domain present 58.7 40 0.00086 26.4 6.4 45 224-272 8-52 (80)
106 cd06407 PB1_NLP A PB1 domain i 58.6 39 0.00084 26.9 6.2 61 226-291 6-66 (82)
107 cd01809 Scythe_N Ubiquitin-lik 58.1 22 0.00048 26.8 4.7 41 225-269 5-45 (72)
108 smart00213 UBQ Ubiquitin homol 57.6 26 0.00056 25.5 4.9 40 225-269 5-44 (64)
109 PF00794 PI3K_rbd: PI3-kinase 56.6 23 0.0005 29.5 4.9 54 215-270 12-69 (106)
110 cd01763 Sumo Small ubiquitin-r 56.5 33 0.00071 27.5 5.6 45 220-269 12-56 (87)
111 KOG2378|consensus 56.2 38 0.00082 35.6 7.1 55 224-285 239-294 (573)
112 cd01805 RAD23_N Ubiquitin-like 55.5 28 0.00062 26.8 5.0 42 226-269 6-47 (77)
113 cd01271 Fe65_C Fe65 C-terminal 55.2 1.1E+02 0.0025 26.3 8.8 81 438-521 39-122 (124)
114 cd01767 UBX UBX (ubiquitin reg 54.0 49 0.0011 25.6 6.1 44 224-272 6-49 (77)
115 cd01792 ISG15_repeat1 ISG15 ub 53.9 27 0.00058 27.4 4.6 40 225-268 7-46 (80)
116 cd05992 PB1 The PB1 domain is 52.0 1.1E+02 0.0023 23.6 8.2 64 225-294 5-69 (81)
117 PF08000 bPH_1: Bacterial PH d 51.3 1.2E+02 0.0026 26.2 8.5 70 440-515 49-123 (124)
118 cd01802 AN1_N ubiquitin-like d 50.6 44 0.00095 27.8 5.6 41 225-269 32-72 (103)
119 cd01769 UBL Ubiquitin-like dom 47.9 38 0.00083 25.0 4.6 33 227-259 4-36 (69)
120 PF14470 bPH_3: Bacterial PH d 46.9 97 0.0021 24.7 7.1 67 440-511 23-94 (96)
121 KOG1892|consensus 46.8 32 0.00069 39.5 5.2 68 233-305 57-128 (1629)
122 cd00153 RalGDS_RA Ubiquitin do 46.8 67 0.0015 25.7 5.6 43 230-273 16-58 (87)
123 cd01773 Faf1_like1_UBX Faf1 ik 46.6 90 0.0019 24.9 6.5 47 219-270 4-50 (82)
124 cd01813 UBP_N UBP ubiquitin pr 42.6 41 0.00089 26.1 4.0 31 229-259 8-38 (74)
125 cd01812 BAG1_N Ubiquitin-like 42.6 59 0.0013 24.4 4.9 40 225-269 5-44 (71)
126 cd01799 Hoil1_N Ubiquitin-like 41.6 43 0.00093 26.1 4.0 36 228-267 10-45 (75)
127 cd01800 SF3a120_C Ubiquitin-li 41.1 44 0.00096 25.9 4.0 37 229-269 6-42 (76)
128 cd01808 hPLIC_N Ubiquitin-like 39.9 63 0.0014 24.5 4.7 39 226-269 6-44 (71)
129 cd01239 PH_PKD Protein kinase 39.8 50 0.0011 28.1 4.2 49 442-490 20-74 (117)
130 cd01772 SAKS1_UBX SAKS1-like U 39.4 1.2E+02 0.0025 23.8 6.2 41 225-270 9-49 (79)
131 cd01771 Faf1_UBX Faf1 UBX doma 38.7 1.4E+02 0.003 23.6 6.5 49 219-272 3-51 (80)
132 cd01791 Ubl5 UBL5 ubiquitin-li 38.4 94 0.002 24.0 5.4 31 229-259 10-40 (73)
133 cd01793 Fubi Fubi ubiquitin-li 36.2 62 0.0013 24.8 4.1 36 230-269 8-43 (74)
134 KOG0821|consensus 35.8 65 0.0014 30.8 4.8 57 67-123 226-285 (326)
135 PF02824 TGS: TGS domain; Int 35.5 42 0.00092 24.8 2.9 29 225-255 3-31 (60)
136 cd06398 PB1_Joka2 The PB1 doma 35.1 1.6E+02 0.0036 23.9 6.5 63 226-293 6-73 (91)
137 cd06406 PB1_P67 A PB1 domain i 33.3 1.5E+02 0.0033 23.5 5.7 60 225-291 7-66 (80)
138 cd01797 NIRF_N amino-terminal 31.2 1.2E+02 0.0025 23.7 5.0 41 225-269 5-47 (78)
139 PF14533 USP7_C2: Ubiquitin-sp 30.9 1.2E+02 0.0025 28.9 5.9 76 207-289 11-90 (213)
140 cd01774 Faf1_like2_UBX Faf1 ik 30.7 2E+02 0.0043 23.0 6.2 42 224-270 8-49 (85)
141 PF13019 Telomere_Sde2: Telome 29.4 1.6E+02 0.0034 26.8 6.0 38 231-271 15-52 (162)
142 PF08567 TFIIH_BTF_p62_N: TFII 28.9 2.6E+02 0.0056 22.0 6.5 60 440-499 13-77 (79)
143 cd01204 IRS_PTB Insulin recept 28.8 3.4E+02 0.0073 22.5 7.9 72 440-516 23-99 (104)
144 cd01790 Herp_N Homocysteine-re 28.3 1.4E+02 0.0031 23.6 4.9 58 225-291 6-66 (79)
145 cd00900 PH-like Pleckstrin hom 28.1 2.7E+02 0.0058 21.1 8.3 71 440-512 21-94 (99)
146 cd01611 GABARAP Ubiquitin doma 27.9 3.2E+02 0.0069 23.2 7.3 50 234-292 44-93 (112)
147 cd06404 PB1_aPKC PB1 domain is 27.3 2.1E+02 0.0046 22.9 5.6 44 225-272 5-48 (83)
148 cd06410 PB1_UP2 Uncharacterize 24.1 4.1E+02 0.0089 21.8 8.4 63 226-293 18-82 (97)
149 PF02991 Atg8: Autophagy prote 23.3 4.4E+02 0.0096 22.0 8.0 76 209-293 4-86 (104)
150 PF13881 Rad60-SLD_2: Ubiquiti 23.3 1.5E+02 0.0033 25.0 4.6 29 225-253 7-36 (111)
151 KOG2320|consensus 22.7 77 0.0017 34.6 3.2 55 231-290 557-611 (651)
152 PF08825 E2_bind: E2 binding d 20.1 75 0.0016 25.4 1.9 35 235-269 1-38 (84)
No 1
>smart00139 MyTH4 Domain in Myosin and Kinesin Tails. Domain present twice in myosin-VIIa, and also present in 3 other myosins.
Probab=100.00 E-value=5.7e-43 Score=311.00 Aligned_cols=142 Identities=42% Similarity=0.665 Sum_probs=132.4
Q ss_pred ccccCCCCCccCCC-CchHHHHHHHHHHHHhhcCCCCCCCCcchhHHHHHHHHhhhCCCCCchHHHHHHHHHhcCCCC-h
Q psy8450 64 FTCVPISEPLLKLE-PPLAEIAVECFECIMRFMGDLPTTPDLTEVKCVYTILMHCHTHEPLRDEVYCQLMKQTTSNKT-E 141 (525)
Q Consensus 64 ~~~~pi~~pLl~~~-~~~~~~A~~~F~~il~~mgd~~~~~~~~~~~~~~~il~~~~~~~~LrDEiy~Qi~KQ~t~n~~-~ 141 (525)
|+++||++|||+++ +++.+.|+++|+.||+||||++.+...++.+++++|++.|+++++||||||||||||||+||+ +
T Consensus 1 ~sk~pi~~pLl~~~~~~~~~~A~~iF~~Il~ymgd~~~~~~~~~~~l~~~i~~~~~~~~~LrDEiy~QLiKQtt~Np~~~ 80 (144)
T smart00139 1 YTKDPIKTSLLKLESDELQKEAVKIFKAILKFMGDLPLPKPDSHLDLVQFILQKGLAHPELRDEIYCQLIKQLTDNPSRQ 80 (144)
T ss_pred CCCCCCCcccccCCCcHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCch
Confidence 68999999999996 579999999999999999999987767788999999999999999999999999999999999 9
Q ss_pred hhhHHHHHHHHhhcccCCCcchHHHHHHHHhhhhhcccccchhHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHH
Q psy8450 142 SCQRGWRLLSIVAAYFTCSDTLRPFLLKYLETAAYDKRRAFHGTASVCLQNLRKTLRYGGRKNVPSVEEVTAVS 215 (525)
Q Consensus 142 ~~~r~W~Ll~l~~~~f~PS~~l~~~l~~~l~~~~~~~~~~~~~~a~~c~~~L~r~~~~g~R~~~Ps~~Ei~a~~ 215 (525)
+..|||+||++|+++||||+.|.+||..||++++.+.. .+.+|++|++ |+|++|||.+||+|+.
T Consensus 81 s~~rgW~Ll~l~~~~FpPS~~l~~yL~~~l~~~~~~~~--~~~~a~~c~~--------g~R~~~Ps~~Ei~Ai~ 144 (144)
T smart00139 81 SEERGWELLYLCTSLFPPSERLLPYLLQFLSRRADQPS--EQGLAKYCLY--------GARKQPPSRLELEAIL 144 (144)
T ss_pred HHHHHHHHHHHHHhHcCChHHHHHHHHHHHHhcCCCcc--HHHHHHHHHh--------CCCCCCCCHHHHHHhC
Confidence 99999999999999999999999999999999886532 3679999997 9999999999999973
No 2
>KOG0248|consensus
Probab=100.00 E-value=4.7e-37 Score=314.93 Aligned_cols=376 Identities=16% Similarity=0.189 Sum_probs=278.5
Q ss_pred cccccccccCCCCCccCCCCchHHHHHHHHHHHHhhcCCCCCCCCcchhHHHHHHHHhhhCCCCCchHHHHHHHHHhcCC
Q psy8450 59 LDLVKFTCVPISEPLLKLEPPLAEIAVECFECIMRFMGDLPTTPDLTEVKCVYTILMHCHTHEPLRDEVYCQLMKQTTSN 138 (525)
Q Consensus 59 ~~~l~~~~~pi~~pLl~~~~~~~~~A~~~F~~il~~mgd~~~~~~~~~~~~~~~il~~~~~~~~LrDEiy~Qi~KQ~t~n 138 (525)
..|+.|+++-|...++..+ ..+...|..-..+.-+.+.. .+.+. -.+++|-.|+||||++|+...
T Consensus 489 ~~m~~~~ed~l~~~~t~~s----~~~~~llf~s~~~~p~~~a~--------~~~hs---~~~~~l~~~~~cql~~~~~~r 553 (936)
T KOG0248|consen 489 NGMIFHNEDRLFKTMISDS----PLWKDLLFASGEEIPKDTMT--------SVDHS---DRKKTLEIARACQLFVSVLMR 553 (936)
T ss_pred CceeeecCCcccccccCCC----HHHHHHHHhhcccccCCccc--------hhhhh---cCcHHHHHHHHHHHHHHHHHH
Confidence 4576776666665555444 44555554444443222221 11122 237888889999999988753
Q ss_pred CChhhhHHHHHHHHhhcccCCCcchHHHHHHHHhhhhhcccccchhHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHcCC
Q psy8450 139 KTESCQRGWRLLSIVAAYFTCSDTLRPFLLKYLETAAYDKRRAFHGTASVCLQNLRKTLRYGGRKNVPSVEEVTAVSAGR 218 (525)
Q Consensus 139 ~~~~~~r~W~Ll~l~~~~f~PS~~l~~~l~~~l~~~~~~~~~~~~~~a~~c~~~L~r~~~~g~R~~~Ps~~Ei~a~~~~~ 218 (525)
.+||||+++|++.|.|...+.+||+.+ .+...||.||++.+.||+++|+|+.-||.+||.+++.+.
T Consensus 554 -----~Q~wQllalca~lfLp~h~flwylr~~---------se~g~yAiyCqraveRtlr~G~RearPSRmEv~S~LlRn 619 (936)
T KOG0248|consen 554 -----AQATQYHIDLAQNILSTAVQQEYLRNE---------SDETRMAIFCESALDRCLRVGGRQEGPSRLEVTSVLTRD 619 (936)
T ss_pred -----HHHHHHHHHHHhhhccchHHHHHHHhc---------ccchhHHHHHHHHHHHHHhccccccCCchheehhhhhcC
Confidence 899999999999999999999999877 235789999999999999999999999999999999877
Q ss_pred Ccee-----eEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhhhhHHH
Q psy8450 219 NSKR-----QLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTEL 293 (525)
Q Consensus 219 ~~~~-----~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl~~~ 293 (525)
+.+. +.|||+||++++|.+|.+ +| |+|++++|
T Consensus 620 p~hhslPfSIpVhf~Ng~YqvVgFDgs---Qe----------------------------------------iCDaiSkW 656 (936)
T KOG0248|consen 620 VTRTKFPHSISVKLPNSEYQIVEFDGK---QK----------------------------------------LCDALSTW 656 (936)
T ss_pred cccccCCcceeeeccCCeeEEEeecch---HH----------------------------------------HHHHHHHH
Confidence 6554 347999999999999976 11 66666666
Q ss_pred hhcC-----------CcEEEEEeee-ccccCCcccchhhHHhhhhhhchhhhhccccccCCCCCCcchHHHHHHHHHHHH
Q psy8450 294 HKNQ-----------QVFYLIFCRS-VWYFPLRLDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLH 361 (525)
Q Consensus 294 e~~~-----------~~~~l~frr~-~~~~p~~~d~~~~~~l~y~Q~~~d~l~G~~~~~~~~~~p~~~~~~~~~LaAl~~ 361 (525)
|+.. ....++++++ +|..-...+++..+.|+|.|.-..+..|+.+. +.+-+..+|||..
T Consensus 657 Eqaske~qpGkeg~~~v~~l~~~~r~y~~~~~~~et~~erlll~~~~s~eIv~gr~p~---------~~~l~e~~AaL~a 727 (936)
T KOG0248|consen 657 ETRSRDAQRGRVISDCAAALSLRMRHYWGHLALTETPIERQFLVWRASEEIVNGRIPL---------SNQLCESLAALYA 727 (936)
T ss_pred HHhhhhhcCCcchhHHHHHHHHHHHHHHHHhhcCCChHHHHHHHhhchHHhhcCcCcc---------hHHHHHHHHHHHH
Confidence 6421 0112344444 34443333567889999999999998888775 5445555666644
Q ss_pred H--hcCCCCCCC----hhhhhhccCcccccccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCCceEEEEE
Q psy8450 362 R--AADMSHPPA----MKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLFGSSFFAIK 435 (525)
Q Consensus 362 ~--~~d~~~~~~----~~~l~~~lP~~~~~~~~~~~~~w~~~I~~~~~~l~g~s~~~Ak~~fL~~~~~~p~yGs~~F~v~ 435 (525)
+ .+|.++... .+.+++|.|+.+.. .-..++++++|...|..++|+|+.+|.+.||..+++||+||+.+|.++
T Consensus 728 q~~~gd~~~~~k~q~l~qv~~rFyP~ryrd--ga~~eqLR~~l~t~W~~L~G~S~~eCvRIYLTVARKWPFFGAKLF~A~ 805 (936)
T KOG0248|consen 728 QMVFGDANQSLSDQQFEFISQRFYPSKMLD--VACIKSLRLQINSNWSELIGMSENECVRIYLTVARKWPFFGAKLFEAS 805 (936)
T ss_pred HHhhccccccchHHHHHHHHHHhChhhhhc--cCCHHHHHHHHhhhHHHHhCCChhHheeeeeeecccCcccchhhhhcC
Confidence 4 245443322 24678999999864 556789999999999999999999999999999999999999999998
Q ss_pred eeC--C----eEEEEEccCceEEeecCccceEEEeecccceeccccccCCCceEEEEE-eccccc----ceEEE--Eecc
Q psy8450 436 RNG--D----QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMK-CGNLFQ----QRVAR--IQTD 502 (525)
Q Consensus 436 ~~~--~----~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~-~g~~~~----~~~~~--~~t~ 502 (525)
... . =+|||||.+||+++|.++..++.+|||+.+..|+.++.+ +.+.|. +-+-.. ..+++ +--+
T Consensus 806 P~~~SS~~~tfiWlAVnEDGvSlLd~N~M~vi~tYpYsSl~TFGG~qDD---FMlVI~~tp~K~~~~~~~EKL~F~MAkP 882 (936)
T KOG0248|consen 806 PMRTSSERKTFIWLAVNEDGVSLLDRNHMDVIRTYPYSSLSTFGGFQDD---FMLVIIRTPGKHPDEAPKEKLTFSMAKP 882 (936)
T ss_pred CCccccccceeEEEEEcCCcceeccccceeEEEEeeccccccccCcccc---eEEEEecCCCCCCCccchhhhhhhhccc
Confidence 642 2 599999999999999999999999999999999988643 344442 211111 12444 4557
Q ss_pred cHHHHHHHHHHHHHHHhhh
Q psy8450 503 QAHEIARLIRQYMSLDRQK 521 (525)
Q Consensus 503 qa~ei~~LI~~Yi~~~~~~ 521 (525)
.-.|+.-+|++||+ +.++
T Consensus 883 KI~E~Tl~~ASYiN-Hcqk 900 (936)
T KOG0248|consen 883 KIEELTLHLASYIN-HCQK 900 (936)
T ss_pred hHHHHHHHHHHHHH-HHHh
Confidence 89999999999999 4444
No 3
>PF00784 MyTH4: MyTH4 domain; InterPro: IPR000857 The microtubule-based kinesin motors and actin-based myosin motors generate movements required for intracellular trafficking, cell division, and muscle contraction. In general, these proteins consist of a motor domain that generates movement and a tail region that varies widely from class to class and is thought to mediate many of the regulatory or cargo binding functions specific to each class of motor []. The Myosin Tail Homology 4 (MyTH4) domain has been identified as a conserved domain in the tail domains of several different unconventional myosins [] and a plant kinesin-like protein [], but has more recently been found in several non-motor proteins []. Although the function is not yet fully understood, there is an evidence that the MyTH4 domain of Myosin-X (Myo10) binds to microtubules and thus could provide a link between an actin-based motor protein and the microtubule cytoskeleton []. The MyTH4 domain is found in one or two copies associated with other domains, such as myosin head, kinesin motor, FERM, PH, SH3 and IQ. The domain is predicted to be largely alpha-helical, interrupted by three or four turns. The MyTH4 domain contains four highly conserved regions designated MGD (consensus sequence L(K/R)(F/Y)MGDhP, LRDE (consensus LRDEhYCQhhKQHxxxN), RGW (consensus RGWxLh), and ELEA (RxxPPSxhELEA), where h indicates a hydrophobic residue and x is any residue [].; GO: 0005856 cytoskeleton; PDB: 3AU5_A 3AU4_A 3PZD_A 3PVL_A.
Probab=99.98 E-value=3.5e-33 Score=239.89 Aligned_cols=110 Identities=38% Similarity=0.648 Sum_probs=90.4
Q ss_pred hhHHHHHHHHhhhCCCCCchHHHHHHHHHhcCCCC-hhhhHHHHHHHHhhcccCCCcchHHHHHHHHhhhhhc--ccccc
Q psy8450 106 EVKCVYTILMHCHTHEPLRDEVYCQLMKQTTSNKT-ESCQRGWRLLSIVAAYFTCSDTLRPFLLKYLETAAYD--KRRAF 182 (525)
Q Consensus 106 ~~~~~~~il~~~~~~~~LrDEiy~Qi~KQ~t~n~~-~~~~r~W~Ll~l~~~~f~PS~~l~~~l~~~l~~~~~~--~~~~~ 182 (525)
+.+++++|++.|+++++||||||||||||||+||+ +++.|||+||++|+++||||+.|.+||.+||.+++.+ .....
T Consensus 2 ~~~l~~~Il~~~l~~~~LrDEiy~QliKQtt~np~~~s~~r~W~Ll~~~~~~f~PS~~l~~yL~~fl~~~~~~~~~~~~~ 81 (114)
T PF00784_consen 2 EIDLIQNILQKGLENPELRDEIYCQLIKQTTNNPSPDSCIRGWQLLALCCSCFPPSKDLLPYLRNFLNRHADSQESDPEV 81 (114)
T ss_dssp HHHHHHHHHHHHHH-CCHHHHHHHHHHHHTSS-SSCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHCCHCHHSTTSHH
T ss_pred HHHHHHHHHHHHHcchhhHHHHHHHHHHHHHCCCchhhHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHcCcccCCCchH
Confidence 46799999999999999999999999999999999 9999999999999999999999999999999998653 23456
Q ss_pred hhHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHH
Q psy8450 183 HGTASVCLQNLRKTLRYGGRKNVPSVEEVTAVS 215 (525)
Q Consensus 183 ~~~a~~c~~~L~r~~~~g~R~~~Ps~~Ei~a~~ 215 (525)
+.+|.+|+++|+|+.+.|+|+.+||..||+|++
T Consensus 82 ~~~a~~c~~~L~~~~~~g~R~~~Ps~~Ei~a~~ 114 (114)
T PF00784_consen 82 GKYAQYCLRRLKRTKKNGPRKFPPSRLEIEAIK 114 (114)
T ss_dssp HCCHHHHHHHHCCHHHH---SS---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccCCCCcCHHHHHhhC
Confidence 789999999999999999999999999999974
No 4
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=99.96 E-value=6.3e-28 Score=230.08 Aligned_cols=198 Identities=22% Similarity=0.270 Sum_probs=165.4
Q ss_pred CCceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhhhhHHHhhcC
Q psy8450 218 RNSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHKNQ 297 (525)
Q Consensus 218 ~~~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl~~~e~~~ 297 (525)
++..++ |+++||+...+.++++|||+|+++.+|+++||... .+|||++...++....++++...++|....+
T Consensus 2 ~~~~~~-V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~---~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~---- 73 (207)
T smart00295 2 KPRVLK-VYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRES---EYFGLQFEDPDEDLSHWLDPAKTLLDQDVKS---- 73 (207)
T ss_pred CcEEEE-EEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCcc---ceeEEEEEcCCCCcCeeCCCccCHHHhcCCC----
Confidence 345566 56889999999999999999999999999999765 8999999986544446788888888876532
Q ss_pred CcEEEEEeeeccccCC-c-ccchhhHHhhhhhhchhhhhccccccCCCCCCcchHHHHHHHHHHHHHh--cCCCCCC---
Q psy8450 298 QVFYLIFCRSVWYFPL-R-LDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRA--ADMSHPP--- 370 (525)
Q Consensus 298 ~~~~l~frr~~~~~p~-~-~d~~~~~~l~y~Q~~~d~l~G~~~~~~~~~~p~~~~~~~~~LaAl~~~~--~d~~~~~--- 370 (525)
.+++++||+++|..+. . .+|+...+++|.|++.|+++|+++| +.++++.|||+++++ ||++...
T Consensus 74 ~~~~l~fr~r~~~~~~~~~~~d~~~~~~ly~Q~~~di~~g~~~~---------~~~~~~~Laal~~q~~~gd~~~~~~~~ 144 (207)
T smart00295 74 EPLTLYFRVKFYPPDPLQLKEDPTRLNLLYLQVRNDILEGRLPC---------PEEEALLLAALALQAEFGDYDEELHVL 144 (207)
T ss_pred CCcEEEEEEEEccCCHHHhcchhHHHHHHHHHHHHHHHcCccCC---------CHHHHHHHHHHHHHHHhcCCChHhcCC
Confidence 4689999999997642 1 2457788899999999999999988 779999999998874 6766433
Q ss_pred -ChhhhhhccCcccccccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCCceEE
Q psy8450 371 -AMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLFGSSFF 432 (525)
Q Consensus 371 -~~~~l~~~lP~~~~~~~~~~~~~w~~~I~~~~~~l~g~s~~~Ak~~fL~~~~~~p~yGs~~F 432 (525)
....++.|+|+.+......+.+.|.+.|.+.|+++.|+|+.+|+..||+++++||+||+++|
T Consensus 145 ~~~~~~~~~lP~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~a~~~yl~~~~~lp~fG~~~f 207 (207)
T smart00295 145 LKELSLKRFLPKQLLDSEKRTLKEWRERIVSLHKELIGLSPEEAKLKYLELAEKLPTYGVELF 207 (207)
T ss_pred ccccccceeCChhhhhhccccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhccccccCcccC
Confidence 33578899999986533346789999999999999999999999999999999999999987
No 5
>KOG3530|consensus
Probab=99.92 E-value=4.4e-24 Score=218.92 Aligned_cols=261 Identities=15% Similarity=0.125 Sum_probs=207.9
Q ss_pred CceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhhhhHHHhhcCC
Q psy8450 219 NSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHKNQQ 298 (525)
Q Consensus 219 ~~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl~~~e~~~~ 298 (525)
.+.|. |+|.||+...+.+...+.+.++++.||.++.|.+. ++|||-..+..+ ..+||++...|-..+ +.+.
T Consensus 10 ~~~C~-V~LLd~sdl~~~~pk~akGq~Lld~V~~~ldl~E~---DYFGLry~D~~~-~~hWLD~tK~I~kqv----K~gp 80 (616)
T KOG3530|consen 10 DVYCR-VLLLDGSDLSINFPKTAKGQELLDYVFYHLDLIEK---DYFGLRYQDSSK-VRHWLDPTKSIKKQV----KIGP 80 (616)
T ss_pred ceEEE-EEEecCccceeccCcccchHHHHHHHHHhhceeee---eccceeeechhh-cceecCcchhHHHHh----ccCC
Confidence 45667 46779999999999999999999999999999998 899999987533 456787776654332 3467
Q ss_pred cEEEEEeeeccc-cCCcccchhhHHhhhhhhchhhhhccccccCCCCCCcchHHHHHHHHHHHHHh--cCCCCCCCh-hh
Q psy8450 299 VFYLIFCRSVWY-FPLRLDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRA--ADMSHPPAM-KE 374 (525)
Q Consensus 299 ~~~l~frr~~~~-~p~~~d~~~~~~l~y~Q~~~d~l~G~~~~~~~~~~p~~~~~~~~~LaAl~~~~--~d~~~~~~~-~~ 374 (525)
+|.|.||.|+|. +|-++-++.++.++|.|+++|++.|++.| ..+.|++||||.+|+ |||+...+. ..
T Consensus 81 pytL~~rVKfY~sdP~~Lree~tRYqfflQlKqDll~GRL~C---------p~~~AaeLaAl~lQsELGDYn~~~Ht~~y 151 (616)
T KOG3530|consen 81 PYTLHLRVKFYPSDPNNLREENTRYQFFLQLKQDLLSGRLYC---------PFETAAELAALILQSELGDYNEEEHTGGY 151 (616)
T ss_pred CeEEEEEEEeccCChhhhhchhhHHHHHHHHHHHHhcCCCCC---------chhhHHHHHHHHHHHHhcCCChhhccccc
Confidence 999999999996 47655557899999999999999999999 679999999999885 899864332 22
Q ss_pred hh--hccCcccccccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCCceEEEEEeeCC-eEEEEEccCceE
Q psy8450 375 TK--FLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLFGSSFFAIKRNGD-QQILALNKHGVH 451 (525)
Q Consensus 375 l~--~~lP~~~~~~~~~~~~~w~~~I~~~~~~l~g~s~~~Ak~~fL~~~~~~p~yGs~~F~v~~~~~-~~~LaIn~~Gi~ 451 (525)
+. +|+|.+- ++++..|.+.|++++|.+|.+|+..||+.++.+.+||...+.|+...+ +..||+++.||.
T Consensus 152 VSefRf~p~Qt--------e~LE~~I~e~hK~~rGqspaqAElnyLnkAkwLemYGVDmH~V~g~dg~ey~LGLTptGIl 223 (616)
T KOG3530|consen 152 VSEFRFLPNQT--------EELEERIFELHKELRGQSPAQAELNYLNKAKWLEMYGVDMHPVKGHDGSEYYLGLTPTGIL 223 (616)
T ss_pred eeeeEeccccc--------HHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhhhhhccccceeeecCCCceeEeeccCceEE
Confidence 32 4677652 678899999999999999999999999999999999999999999766 999999999999
Q ss_pred EeecCccceEEEeecccceeccccccCCCceEEEEEeccccc----ceEEEEecccHHHHHHHH
Q psy8450 452 FLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNLFQ----QRVARIQTDQAHEIARLI 511 (525)
Q Consensus 452 ~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~~~----~~~~~~~t~qa~ei~~LI 511 (525)
+++.+ ..+..|-|.+|..+. ...+.+.+.+. ++... ..++.|+++-+..--+|=
T Consensus 224 vf~g~--~kig~f~WpkI~Kvd---Fk~kk~~L~v~-edd~~~~~q~hTf~F~~~~~~AcKhLW 281 (616)
T KOG3530|consen 224 VFEGK--KKIGLFFWPKITKVD---FKGKKFTLVVS-EDDDQGREQEHTFVFRLPSPKACKHLW 281 (616)
T ss_pred EEECC--ceeeEEecchheEee---ccCcEEEEEEe-eccccCCcccceEEEeCCCcchhHHHH
Confidence 99966 457789999999853 23333444442 22222 258999987665555443
No 6
>KOG4261|consensus
Probab=99.84 E-value=3.1e-22 Score=208.87 Aligned_cols=274 Identities=19% Similarity=0.274 Sum_probs=213.4
Q ss_pred EecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEc---CCc---eee-------------------c
Q psy8450 225 YRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVE---GDA---FTM-------------------P 279 (525)
Q Consensus 225 v~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~---~~~---~~~-------------------~ 279 (525)
|.+.||.++++.+|-+-++.++.-.||.++||.+. +.|+|.-.+. ++. .+. -
T Consensus 89 vrmldg~vkti~vd~sq~v~~L~~~ic~~igItny---eeyslvre~~~~~~~~~tgtl~~~~~~m~~~~kme~Lkkkl~ 165 (1003)
T KOG4261|consen 89 VRMLDGAVKTIMVDDSQPVSQLMMTICNKIGITNY---EEYSLVREDIEEQNEEGTGTLNLKRKLMRKERKMEKLRKKLH 165 (1003)
T ss_pred eeecccccceeeecccccHHHHHHHHHhccCccch---hhhhhhHHHHHHhcCCCCceEEeehhHHHhhhhhHHHHhhcc
Confidence 45668999999999999999999999999999998 6888875431 110 000 0
Q ss_pred CCCcchhhhhhHHHhhc--CCcEEEEEeeeccccCCccc--chhhHHhhhhhhchhhhhccccccCCCCCCcchHHHHHH
Q psy8450 280 LAKEEYILDVTTELHKN--QQVFYLIFCRSVWYFPLRLD--CQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAK 355 (525)
Q Consensus 280 L~~~~~i~Dvl~~~e~~--~~~~~l~frr~~~~~p~~~d--~~~~~~l~y~Q~~~d~l~G~~~~~~~~~~p~~~~~~~~~ 355 (525)
++.+..++|...-+... +..+.+++||++|+..-..| +++.++|+|.|++++++.|.|++ +.+.+.+
T Consensus 166 td~el~wld~~rtlreqgide~et~llRrk~f~sd~nvdsrdpvqlnllyvQ~rD~il~g~hpv---------~~~kA~e 236 (1003)
T KOG4261|consen 166 TDDELNWLDHSRTLREQGIDEEETLLLRRKFFFSDQNVDSRDPVQLNLLYVQARDDILNGSHPV---------SFEKACE 236 (1003)
T ss_pred cchhhhhHHHhHHHHhcCccHHHHHHHHHHHhhccccccccchHHhhhhhhhhhcccccCcCch---------hHHHHHH
Confidence 11222333333322111 34688999999987643322 47999999999999999999999 8899999
Q ss_pred HHHHHHHh--cCCCCC--CChhhhhhccCcccccccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCCceE
Q psy8450 356 LAALLHRA--ADMSHP--PAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLFGSSF 431 (525)
Q Consensus 356 LaAl~~~~--~d~~~~--~~~~~l~~~lP~~~~~~~~~~~~~w~~~I~~~~~~l~g~s~~~Ak~~fL~~~~~~p~yGs~~ 431 (525)
+|+++.++ ++++.. ....++++|+|+...+. .. ..+|...|+.+.+++..+||..|.+.|+.+++||.+|
T Consensus 237 ~a~~qshiq~g~~~~~k~k~~ld~kd~lpk~y~k~-----k~-ekKif~~~k~~~~~sei~ak~~y~k~~r~l~tygvtf 310 (1003)
T KOG4261|consen 237 FAGFQSHIQFGPHNEDKHKGFLDLKDFLPKEYVKQ-----KG-EKKIFQAHKNCGGMSEIDAKVKYVKLARSLKTYGVTF 310 (1003)
T ss_pred HhccccccccCCchhhccccchhccccChHHHhcc-----cc-chhhhhhhhhhcchhHHHHHHHHHHHhccccccceEE
Confidence 99998754 443321 13467889999987542 12 5789999999999999999999999999999999999
Q ss_pred EEEEee-CC-----eEEEEEccCceEEeecCccceEEEeecccceeccccccCCCceEEEEEecccccceEEEEecccHH
Q psy8450 432 FAIKRN-GD-----QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNLFQQRVARIQTDQAH 505 (525)
Q Consensus 432 F~v~~~-~~-----~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~~~~~~~~~~t~qa~ 505 (525)
|.|+-. ++ |.+|||++.-+..+|-+++++|.++|+..|..|.. + ...|.+.+|+... .-+..+|++++
T Consensus 311 f~VKek~~gknklVprlLgv~K~svmr~de~tk~il~ewpl~~V~rw~~---s--~~~ftldfgdyq~-~yysvqtT~~e 384 (1003)
T KOG4261|consen 311 FLVKEKMKGKNKLVPRLLGVTKESVMRVDEKTKEILQEWPLTTVRRWAA---S--PKSFTLDFGDYQD-GYYSVQTTEGE 384 (1003)
T ss_pred EEehhhccCcccccchhhhhhHHhhhhcchhhhhHhhhcchhHHHHhcc---C--cceeccccccccc-cccceeeccch
Confidence 999843 22 89999999999999999999999999999988753 2 2456777886543 57889999999
Q ss_pred HHHHHHHHHHHHHhhhc
Q psy8450 506 EIARLIRQYMSLDRQKN 522 (525)
Q Consensus 506 ei~~LI~~Yi~~~~~~~ 522 (525)
.|+.||.+||.++..+.
T Consensus 385 ~i~Qli~gyidiilkkk 401 (1003)
T KOG4261|consen 385 QIAQLIAGYIDIILKKK 401 (1003)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999999999998754
No 7
>KOG3552|consensus
Probab=99.83 E-value=4e-21 Score=203.65 Aligned_cols=307 Identities=17% Similarity=0.168 Sum_probs=228.6
Q ss_pred hhhcCCCCCCCCHHHHHHHHcCCCceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEE--cC
Q psy8450 196 TLRYGGRKNVPSVEEVTAVSAGRNSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIV--EG 273 (525)
Q Consensus 196 ~~~~g~R~~~Ps~~Ei~a~~~~~~~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~--~~ 273 (525)
++-+|.-.++|+..-.-.+- .+.. |+|.||..+.|.+|.+|||+||+-.+.++|.|... +.|+|.+.. +.
T Consensus 164 V~InG~~~~~~salgllcmP----NVLK-vyLENGQTKsFkfdatTtVkDVIltl~eKLsi~~i---E~FsL~LE~~~s~ 235 (1298)
T KOG3552|consen 164 VCINGAPLFPPSALGLLCMP----NVLK-VYLENGQTKSFKFDATTTVKDVILTLLEKLSICCI---ELFSLVLEHVKSL 235 (1298)
T ss_pred heecCcccCCcccccceech----hHHH-HHHhcCccceeeecccccHHHHHHHHHHHHhhhhH---HHHHHHHHHHHhc
Confidence 44678889999874333332 2334 46899999999999999999999999999999997 799998743 11
Q ss_pred C-ceeecCCCcchhhhhhHHHhhcCCcEEEEEeeecc-ccCCc--ccchhhHHhhhhhhchhhhhccccccCCCCCCcch
Q psy8450 274 D-AFTMPLAKEEYILDVTTELHKNQQVFYLIFCRSVW-YFPLR--LDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDI 349 (525)
Q Consensus 274 ~-~~~~~L~~~~~i~Dvl~~~e~~~~~~~l~frr~~~-~~p~~--~d~~~~~~l~y~Q~~~d~l~G~~~~~~~~~~p~~~ 349 (525)
+ .-...|++.|.+..|..+= ..-.++.+||..+- .+|.. ..|++.++++|.|.+.|+++.++-. ++ .
T Consensus 236 ~rnkL~LLheqEsl~qV~~Rp--~sHk~RCLFRItFVPkdp~dLlqrDpvAfeYLYlQsCnDV~QERFap----El---k 306 (1298)
T KOG3552|consen 236 KRNKLTLLHEQESLAQVAARP--GSHKLRCLFRITFVPKDPADLLQRDPVAFEYLYLQSCNDVNQERFAP----EL---K 306 (1298)
T ss_pred ccceeEeecHHHHHHHHHhCC--cccceeEEEEEEeccCCHHHHHhcCchHHHHHHHhhhhhHhHhhccc----cc---c
Confidence 1 1134567777766555421 12368888877654 34532 2458999999999999999998864 33 2
Q ss_pred HHHHHHHHHHHHHh----cCCCCCCChh------hhhhccCcccccccCCCHHHHHHHHHHHHHhcC-------CCCHHH
Q psy8450 350 VYDVAKLAALLHRA----ADMSHPPAMK------ETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTA-------PLHSIQ 412 (525)
Q Consensus 350 ~~~~~~LaAl~~~~----~d~~~~~~~~------~l~~~lP~~~~~~~~~~~~~w~~~I~~~~~~l~-------g~s~~~ 412 (525)
-+-+.+||||+.+. ....+..+.+ .|++|+|..++. +++.+++++.|....+..+ .++..|
T Consensus 307 ~elALRLAALhm~~~~~a~~q~qKislKyIEkewGlE~Fvp~sll~--~MK~K~ikkaiSh~lK~Nqnl~~p~kklt~lQ 384 (1298)
T KOG3552|consen 307 PELALRLAALHMHQHALANNQAQKISLKYIEKEWGLERFVPVSLLE--GMKRKEIKKAISHFLKLNQNLGSPSKKLTQLQ 384 (1298)
T ss_pred hHHHHHHHHHHHHHHHHhhccccchhhhhhhhhhchhhcccHHHHh--hhhHHHHHHHHHHHHHhhhccCChhHHHHHHH
Confidence 36789999998742 2222332322 488999999875 8888999998888776654 357789
Q ss_pred HHHHHHHHHhcCCCCCceEEEEEeeCC-----eEEEEEccCceE-EeecCccceEEEeecccceeccccccCCCceEEEE
Q psy8450 413 AKAQLLEILSKWPLFGSSFFAIKRNGD-----QQILALNKHGVH-FLNLLTHETISSVPYGDVISTRKVRAESGTLYLEM 486 (525)
Q Consensus 413 Ak~~fL~~~~~~p~yGs~~F~v~~~~~-----~~~LaIn~~Gi~-~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i 486 (525)
||++||+++..+|.||...|.++...+ .++|.--+.||+ +++.++.-+-....|+++..+...+.++....+.|
T Consensus 385 aklhYL~ila~L~sYGgr~F~atl~~~~~~se~~LLVgpryGiSqVinak~nv~~~la~f~~~trVe~~~Ede~~~~V~i 464 (1298)
T KOG3552|consen 385 AKLHYLDILASLPSYGGRCFSATLREGDRESERVLLVGPRYGISQVINAKNNVPQPLAAFEDFTRVEVNREDEVTCSVSI 464 (1298)
T ss_pred HHHHHHHHHhhhhhccchhhhhhhhhcccceeEEEEeccccchhHhhhcccccchhHHHhhhcceeEeeccccceEEEEE
Confidence 999999999999999999999986543 456666789997 56766554444467888888887777776666776
Q ss_pred EecccccceEEEEecccHHHHHHHHHHHHHHHhhhc
Q psy8450 487 KCGNLFQQRVARIQTDQAHEIARLIRQYMSLDRQKN 522 (525)
Q Consensus 487 ~~g~~~~~~~~~~~t~qa~ei~~LI~~Yi~~~~~~~ 522 (525)
.+-+ ++..++.+|+..|-++++|+++|.++++.+.
T Consensus 465 ~mld-vk~vtllmEs~da~~lacl~aGYYRLLvd~v 499 (1298)
T KOG3552|consen 465 FMLD-VKAVTLLMESRDACELACLLAGYYRLLVDPV 499 (1298)
T ss_pred EEec-cceeEEEeeccccchhhHhhhhhhhhhhcch
Confidence 5543 4678999999999999999999999998764
No 8
>KOG3529|consensus
Probab=99.76 E-value=1.5e-18 Score=185.10 Aligned_cols=237 Identities=14% Similarity=0.216 Sum_probs=192.1
Q ss_pred CCceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhhhhHHHhhcC
Q psy8450 218 RNSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHKNQ 297 (525)
Q Consensus 218 ~~~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl~~~e~~~ 297 (525)
+++.++|..+..+. . +.+++.+|++|++..+|..+||++. .+|||..+++. ....+|+.+..++| .+..+ +
T Consensus 12 ~~~~~rv~~~d~e~-~-~~i~~~~t~~~l~dlv~~~~glre~---~yfgl~~~d~~-~~~~wl~~d~~v~~--~d~~k-~ 82 (596)
T KOG3529|consen 12 KPINVRVTTMDAEL-E-FAIQPKTTGKQLFDLVVKTIGLRES---WYFGLQYTDSK-GEPTWLKLDKKVLD--QDVPK-D 82 (596)
T ss_pred CCcceeeeehhhhh-h-hhhCcchhHHHHHHHHhccCCCchh---hhcccccccCC-CCcchhhccchhhh--hhcCC-C
Confidence 45667766565554 3 8999999999999999999999998 59999998642 33456666655433 22222 3
Q ss_pred CcEEEEEeeeccccCCc--ccchhhHHhhhhhhchhhhhccccccCCCCCCcchHHHHHHHHHHHHHh--cCCCCC---C
Q psy8450 298 QVFYLIFCRSVWYFPLR--LDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRA--ADMSHP---P 370 (525)
Q Consensus 298 ~~~~l~frr~~~~~p~~--~d~~~~~~l~y~Q~~~d~l~G~~~~~~~~~~p~~~~~~~~~LaAl~~~~--~d~~~~---~ 370 (525)
.++.+.|+.++|...+. +-+..+..|+|.|++..++.+.+.| +.+..+.|||++.++ ||++.. .
T Consensus 83 ~~~~~~f~akfy~E~v~eeli~~~t~~Lffl~vk~~il~~~i~~---------~~E~~~~las~~vqa~~gdy~~~~~~~ 153 (596)
T KOG3529|consen 83 SPLNFHFHAKFYPEDVAEELIQDITQHLFFLQVKEAILSDEIYC---------PPETSVLLASYAVQAKYGDYDKETHKV 153 (596)
T ss_pred CCcceeeeeecchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC---------CchHHHHHHHHHHHHHhccccchhhhh
Confidence 34789999999987553 2236889999999999999999998 558999999999875 676532 2
Q ss_pred ChhhhhhccCcccccccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCCceEEEEEeeCC-eEEEEEccCc
Q psy8450 371 AMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLFGSSFFAIKRNGD-QQILALNKHG 449 (525)
Q Consensus 371 ~~~~l~~~lP~~~~~~~~~~~~~w~~~I~~~~~~l~g~s~~~Ak~~fL~~~~~~p~yGs~~F~v~~~~~-~~~LaIn~~G 449 (525)
....-...+|..++....++.+.|..+|...|.++.|++.++|...||++++.+|+||.++|+++...+ .+||||+..|
T Consensus 154 ~~l~~~~~lP~~~~~q~~~s~~~~e~ri~~~~~~~~~~~re~a~leylki~qdle~ygvny~~i~~k~gt~~~lgv~~~g 233 (596)
T KOG3529|consen 154 GRLAGDRLLPQRVLDQHKMTPDMWEDRIKEWYAEHRGMTREEAMLEYLKIAQDLEMYGVNYFEIKNKKGTDLWLGVDALG 233 (596)
T ss_pred hccccCcccchhhhhhccccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhccccccccceeecCCCCCCccccccccCC
Confidence 223345678988877777899999999999999999999999999999999999999999999998887 9999999999
Q ss_pred eEEeecCcc-ceEEEeecccceec
Q psy8450 450 VHFLNLLTH-ETISSVPYGDVIST 472 (525)
Q Consensus 450 i~~l~~~tk-~~l~~~~~~~I~s~ 472 (525)
+.+++..++ .+-..|||++|.++
T Consensus 234 l~~y~~~~k~~P~~~f~w~eirni 257 (596)
T KOG3529|consen 234 LNIYDESDKLTPKIGFPWSEIRNI 257 (596)
T ss_pred ccccccccCCCCCCCCCccccCCC
Confidence 999998876 56688999999885
No 9
>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 4DXA_B 2EMS_A 2ZPY_A 1J19_A 2D10_B 2D11_B 1GC6_A 2D2Q_A 2EMT_A 2YVC_A ....
Probab=99.75 E-value=9.6e-18 Score=146.90 Aligned_cols=111 Identities=28% Similarity=0.419 Sum_probs=91.1
Q ss_pred cCCcccchhhHHhhhhhhchhhhhccccccCCCCCCcchHHHHHHHHHHHHHh--cCCC-CCCC-----hhhh-----hh
Q psy8450 311 FPLRLDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRA--ADMS-HPPA-----MKET-----KF 377 (525)
Q Consensus 311 ~p~~~d~~~~~~l~y~Q~~~d~l~G~~~~~~~~~~p~~~~~~~~~LaAl~~~~--~d~~-~~~~-----~~~l-----~~ 377 (525)
+|...+|+.+++++|.|+++|+++|+++| +.+++++||||++++ +|++ .... ...+ ..
T Consensus 1 ~p~~~~d~~~~~lly~Q~~~~vl~g~~~~---------~~e~a~~LAAl~~q~~~gd~~~~~~~~~~~~~~~~~~~~~~~ 71 (126)
T PF00373_consen 1 DPLHIDDPITRHLLYLQARRDVLQGRLPC---------SEEDAIKLAALQLQAEYGDYNSEQEHSSGYIDPEIKEFQLEN 71 (126)
T ss_dssp SGGGTTSHHHHHHHHHHHHHHHHTTSSTS----------HHHHHHHHHHHHHHHHTSSTTTTTSSTTTTTGSHHCTCGHG
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCcCCC---------CHHHHHHHHHHHHHHHhcCCCcccccCcccccccccchhhhh
Confidence 46666789999999999999999999998 889999999999986 6665 2211 1222 24
Q ss_pred ccC--cccccccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCCceEE
Q psy8450 378 LLP--KPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLFGSSFF 432 (525)
Q Consensus 378 ~lP--~~~~~~~~~~~~~w~~~I~~~~~~l~g~s~~~Ak~~fL~~~~~~p~yGs~~F 432 (525)
|+| ..... ..+.++|.+.|.+.|++++|+|+.+|+..||++|++||+||++||
T Consensus 72 ~iP~~~~~~~--~~~~~~~~~~I~~~~~~l~~~s~~~a~~~fl~~~~~~p~yG~~~F 126 (126)
T PF00373_consen 72 FIPKAPKLIK--KMKQKEWEKRILEQHKKLRGMSPEEAKLQFLQICQSLPTYGSTFF 126 (126)
T ss_dssp TSSHHHHHHC--CSTHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHCTSTTTTEEEE
T ss_pred hhhhhHHHHh--hhhHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCCCCceeC
Confidence 899 66654 677899999999999999999999999999999999999999998
No 10
>KOG0792|consensus
Probab=99.72 E-value=1.2e-16 Score=173.75 Aligned_cols=235 Identities=17% Similarity=0.173 Sum_probs=179.7
Q ss_pred ceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhhhhHHHhhcCCc
Q psy8450 220 SKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHKNQQV 299 (525)
Q Consensus 220 ~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl~~~e~~~~~ 299 (525)
+.+. +.|.|.....+.+.+..+..++++.+|.+|++.+. .+|+|.-..+.....+|++...-+ -.++++...+
T Consensus 23 v~~~-i~llds~~~eftls~es~gQ~~ld~V~qrL~~~e~---~yFgl~~~~~k~~~~rWvdleK~l---kkql~k~a~~ 95 (1144)
T KOG0792|consen 23 VVCR-ILLLDSDVVEFTLSSESTGQELLDAVAQRLELREK---EYFGLLWSPDKPDQIRWVDLEKPL---KKQLIKVANP 95 (1144)
T ss_pred EEEE-EEecCCceEEEEEecCCCchhHHHHHhhhhccccc---ccccccccCCccCccceeccchhH---HHhhhccCCC
Confidence 4455 35678888999999999999999999999999998 799933222111112333332221 1122222358
Q ss_pred EEEEEeeecccc-CCcccchhhHHhhhhhhchhhhhccccccCCCCCCcchHHHHHHHHHHHHHh--cCCCCCCChhhhh
Q psy8450 300 FYLIFCRSVWYF-PLRLDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRA--ADMSHPPAMKETK 376 (525)
Q Consensus 300 ~~l~frr~~~~~-p~~~d~~~~~~l~y~Q~~~d~l~G~~~~~~~~~~p~~~~~~~~~LaAl~~~~--~d~~~~~~~~~l~ 376 (525)
+.++||.++|.. |..+.++.++...|.|++.|++.|+++| +.+.++.||.+..|+ +|+++..+...++
T Consensus 96 p~l~frV~fyV~~p~~LqeE~TRyqyylQvK~di~eGrl~C---------t~~qailLA~yavQae~gdy~~~~s~~~l~ 166 (1144)
T KOG0792|consen 96 PLLHFRVKFYVPDPSGLQEEATRYQYYLQVKKDILEGRLPC---------TLNQAILLASYAVQAEFGDYNQKQSQDGLE 166 (1144)
T ss_pred ceEEEEEEEEecChhHHHHHHHHHHHHHHHHHHHhccccCC---------chHHHHHHHHhhhhhhhcchhhhcCCccch
Confidence 899999999964 6566668899999999999999999999 779999999998876 7777654433333
Q ss_pred h--ccCcccccccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCCceEEEEEeeCC-eEEEEEccCceEEe
Q psy8450 377 F--LLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLFGSSFFAIKRNGD-QQILALNKHGVHFL 453 (525)
Q Consensus 377 ~--~lP~~~~~~~~~~~~~w~~~I~~~~~~l~g~s~~~Ak~~fL~~~~~~p~yGs~~F~v~~~~~-~~~LaIn~~Gi~~l 453 (525)
. +.|..... ...-.++..++|.+.|+.+.|+.+.||...||+.++++.+||-.||.+++..+ .+.|||...||.+.
T Consensus 167 ~~~~~p~~~~~-~~n~~~e~~~kVa~lhQ~h~G~~~~eAE~~yi~~~~rlegyG~e~~~akD~~g~~i~lGi~~~Gi~V~ 245 (1144)
T KOG0792|consen 167 YLSVFPQCTLQ-DENVLEEFEQKVAELHQQHRGLLPAEAETNYINEAKRLEGYGEEFHRAKDLHGNDINLGIARVGILVP 245 (1144)
T ss_pred hcccccccccc-chhhHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHhhccccceecccccCCCcceeeeeeeceeEee
Confidence 2 34544322 11223588999999999999999999999999999999999999999999877 89999999999998
Q ss_pred ecCccceEEEeecccceec
Q psy8450 454 NLLTHETISSVPYGDVIST 472 (525)
Q Consensus 454 ~~~tk~~l~~~~~~~I~s~ 472 (525)
..+ +.....|||.+|..+
T Consensus 246 ~~~-g~~~~~~~W~di~~i 263 (1144)
T KOG0792|consen 246 GQN-GRQSVKFPWGDIIKI 263 (1144)
T ss_pred ccC-ccccceechhhhhhh
Confidence 744 667778999999875
No 11
>KOG3527|consensus
Probab=99.61 E-value=7.2e-15 Score=156.74 Aligned_cols=265 Identities=15% Similarity=0.222 Sum_probs=200.1
Q ss_pred CCCceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhhhhHHHhh-
Q psy8450 217 GRNSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHK- 295 (525)
Q Consensus 217 ~~~~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl~~~e~- 295 (525)
+++..+.+ .+.||+...+.++......++++.+|++|+|-+. ++|+|-+.++.+ ...++|+.....+
T Consensus 29 ~k~~~~~v-tlld~s~~~~~~ek~~kg~~~~~~vc~~LnliEk---dyfgl~~~~~~~--------~~~wlD~~k~i~k~ 96 (975)
T KOG3527|consen 29 TKDAICKV-TLLDGSEYSCDVEKHAKGQVLFDKVCEHLNLLEK---DYFGLTYLTSSE--------QKNWLDPAKEIKKQ 96 (975)
T ss_pred CCCccceE-EEeeCCcceeeeecccccchhHHHHhhccchhhh---hhceeEEecCCC--------Cccccccchhhhcc
Confidence 37777885 5669999999999999999999999999999887 899999876432 1224455444332
Q ss_pred -cCCcEEEEEeeeccc-cCCcccchhhHHhhhhhhchhhhhccccccCCCCCCcchHHHHHHHHHHHHHh--cCCCCC--
Q psy8450 296 -NQQVFYLIFCRSVWY-FPLRLDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRA--ADMSHP-- 369 (525)
Q Consensus 296 -~~~~~~l~frr~~~~-~p~~~d~~~~~~l~y~Q~~~d~l~G~~~~~~~~~~p~~~~~~~~~LaAl~~~~--~d~~~~-- 369 (525)
...+|.|.|-.|++. +|..+...++...+-.|++.||+.|+++| +.-..+.|+.+..+. +||...
T Consensus 97 vr~~~w~f~f~vKfyPp~Psql~EditrY~lcLq~R~Dil~GrlPc---------sfvt~allgsy~vq~E~gdYd~ee~ 167 (975)
T KOG3527|consen 97 VRSFPWNFTFNVKFYPPDPSQLTEDITRYYLCLQLRQDILSGRLPC---------SFVTHALLGSYTVQSELGDYDPEEH 167 (975)
T ss_pred cccCccceeEeeeeCCCChHhccccchhheehhhhhhhhhcCcccc---------chhhhhhhhhHhHHhHhccCCHHHc
Confidence 246899999999885 46543334667778899999999999999 777888999988775 677532
Q ss_pred CChhhhhhc--cCcccccccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCCceEEEEEeeCC-eEEEEEc
Q psy8450 370 PAMKETKFL--LPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLFGSSFFAIKRNGD-QQILALN 446 (525)
Q Consensus 370 ~~~~~l~~~--lP~~~~~~~~~~~~~w~~~I~~~~~~l~g~s~~~Ak~~fL~~~~~~p~yGs~~F~v~~~~~-~~~LaIn 446 (525)
.+ ..+++| -|.+. .++...+.+.|+.++|+++.+|.++||+.+.++-+||.....++...+ .+.|||+
T Consensus 168 ~~-~y~~df~~aPnqt--------~eledkv~eLhkt~rg~~pa~A~ih~lenakkl~mYgvDlh~aKdsegvdi~lgvc 238 (975)
T KOG3527|consen 168 GS-DYLSDFKFAPNQT--------KELEDKVMELHKTHRGMTPAEAEIHFLENAKKLSMYGVDLHHAKDSEGVDIMLGVC 238 (975)
T ss_pred cc-chhhhhccCcchh--------hhHHHHHHHHHhhhcCCChhHhHHHHHHhhhhhhhcccccccccccccceeeeccc
Confidence 12 344443 44332 456788999999999999999999999999999999999999999888 9999999
Q ss_pred cCceEEeecCccceEEEeecccceeccccccCCCceEEEEEeccccc-ceEEEEecccHHHHHHHHHHHHH
Q psy8450 447 KHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNLFQ-QRVARIQTDQAHEIARLIRQYMS 516 (525)
Q Consensus 447 ~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~~~-~~~~~~~t~qa~ei~~LI~~Yi~ 516 (525)
..|+.++.++ -.+..+.|..|..+.+.+. .+|+.+.-|.... ..++-|+.+.-..--.|-..++.
T Consensus 239 a~glliy~d~--lrinrfawPKilKisykR~---~FyiKirPge~eq~EstigFklpnhraakrlwk~cvE 304 (975)
T KOG3527|consen 239 ASGLLIYRDR--LRINRFAWPKILKISYKRS---NFYIKIRPGEFEQFESTIGFKLPNHRAAKRLWKVCVE 304 (975)
T ss_pred ccceEEeech--hhhccccCchhhhhcccee---eeEEEecCCccccccccccccccchhhHHhhhHhhhh
Confidence 9999999755 6788899999988766542 3777777665443 24566666654433344444443
No 12
>KOG4257|consensus
Probab=99.50 E-value=1e-13 Score=144.07 Aligned_cols=284 Identities=15% Similarity=0.210 Sum_probs=205.6
Q ss_pred EecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEc-CCceeecCCCcchhhhhhHHHh---------
Q psy8450 225 YRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVE-GDAFTMPLAKEEYILDVTTELH--------- 294 (525)
Q Consensus 225 v~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~-~~~~~~~L~~~~~i~Dvl~~~e--------- 294 (525)
+++|||..++|.+|-.+|+.-|+..++.-+|+.... ...|+.-+.+. .+.. ..+...-.+..++....
T Consensus 7 v~~p~~~~kaVr~dv~~t~~rvi~v~~~~~g~~~~~-~~~~acr~~t~i~~~~-~~~~~S~~~~~~l~~i~lp~cy~~~l 84 (974)
T KOG4257|consen 7 VFLPGGASKAVRYDVQTTIERVIHVVARGIGISQVA-VAHFACRLVTGISPQT-AGSGDSLWLHPMLRIIQLPHCYARHL 84 (974)
T ss_pred cccCCCcceeeeecchhheeeeeeeeeeccCCCchh-hhheeeeeccccchhh-hhhccccccchhhhhccccccccccC
Confidence 579999999999999999999999999999999653 13344433321 0110 00101110111111100
Q ss_pred --hcCCcEEEEEeeeccccCC---cccchhhHHhhhhhhchhhhhccccccCCCCCCcchHHHHHHHHHHHHH--hcCCC
Q psy8450 295 --KNQQVFYLIFCRSVWYFPL---RLDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHR--AADMS 367 (525)
Q Consensus 295 --~~~~~~~l~frr~~~~~p~---~~d~~~~~~l~y~Q~~~d~l~G~~~~~~~~~~p~~~~~~~~~LaAl~~~--~~d~~ 367 (525)
-....|++-+|.++-.+.. ..+|..++-++|.|+++||++.....+ +.+.+.+||+|-.+ ..+..
T Consensus 85 p~~~s~ewr~elr~Ry~P~~~~El~~eD~st~~Y~~~Qv~~df~q~~a~~~--------s~evAlql~cL~vrr~Fk~~~ 156 (974)
T KOG4257|consen 85 PIGVSDEWRLELRMRYMPQSVYELQAEDSSTFVYLHEQVVDDFFQHVAWRS--------SVEVALQLACLKVRRDFKEHQ 156 (974)
T ss_pred CCCcchhheeeeeeeeCcHHHHHHHhcccchhhhHHHHHHHHHHHHHHhhh--------hHHHHHHHHHHHHHHHHHhCc
Confidence 0135788988877654432 124567888889999999998765442 77999999999663 33333
Q ss_pred CC-----CChh------hhhhccCcccccccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCCceEEEEEe
Q psy8450 368 HP-----PAMK------ETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLFGSSFFAIKR 436 (525)
Q Consensus 368 ~~-----~~~~------~l~~~lP~~~~~~~~~~~~~w~~~I~~~~~~l~g~s~~~Ak~~fL~~~~~~p~yGs~~F~v~~ 436 (525)
+. .+.+ .++.|+|+.+.. ..+++.+++.|.+.+++..+++++|....|++++...-.|....|.+.-
T Consensus 157 ~na~~kksh~e~lekevglksffPksl~~--~~Kpk~lkKliqq~fkkfan~n~eE~i~rff~lL~~v~~~d~E~fk~~L 234 (974)
T KOG4257|consen 157 HNAPGKKSHLEDLEKEVGLKSFFPKSLHN--PFKPKHLKKLIQQTFKKFANLNPEESIIRFFALLLEVYKFDVELFKCSL 234 (974)
T ss_pred ccCCCccccHHHHHHHhhHHhhChHhhhc--ccChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhHHheeeec
Confidence 22 1222 478999999865 6788999999999999999999999999999999988888888898887
Q ss_pred eCC---eEEEEEccC-ceEEeecCccceEEEeecccceecccccc-CCC-ceEEEEEecccccceEEEEec-ccHHHHHH
Q psy8450 437 NGD---QQILALNKH-GVHFLNLLTHETISSVPYGDVISTRKVRA-ESG-TLYLEMKCGNLFQQRVARIQT-DQAHEIAR 509 (525)
Q Consensus 437 ~~~---~~~LaIn~~-Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~-~~~-~~~~~i~~g~~~~~~~~~~~t-~qa~ei~~ 509 (525)
.++ .+.|+|+++ ||+.+....-.+.....|.+|.++..+.. +++ ...+.+.+.+..++-.+++.+ ..|+.|++
T Consensus 235 ~s~WnisveLvvGPh~Gisy~t~~~~~~t~laefkqi~sI~~c~~~eek~k~~lQlkisga~e~l~It~ssl~~aesmAd 314 (974)
T KOG4257|consen 235 GSGWNISVELVVGPHTGISYLTNERCDPTRLAEFKQIASITICKMEEEKEKTLLQLKISGAPEPLLITLSSLELAESMAD 314 (974)
T ss_pred ccccceeEEEEecCcccceeccCCCCChHHHHhhhhhheeEEeecccccccceeeeeccCCCCCeEEecChhhHHHHHHH
Confidence 665 899999999 99988777677888899999999875443 333 466777776665665666654 46999999
Q ss_pred HHHHHHHHHhh
Q psy8450 510 LIRQYMSLDRQ 520 (525)
Q Consensus 510 LI~~Yi~~~~~ 520 (525)
||.+||++..+
T Consensus 315 LiDGYcrL~n~ 325 (974)
T KOG4257|consen 315 LIDGYCRLYNQ 325 (974)
T ss_pred HHHHHHHHHcC
Confidence 99999999876
No 13
>KOG3784|consensus
Probab=99.07 E-value=6.8e-09 Score=103.36 Aligned_cols=234 Identities=16% Similarity=0.161 Sum_probs=152.2
Q ss_pred eEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCC----ceeecCCCcchhhhhhHHHhhcCC
Q psy8450 223 QLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGD----AFTMPLAKEEYILDVTTELHKNQQ 298 (525)
Q Consensus 223 ~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~----~~~~~L~~~~~i~Dvl~~~e~~~~ 298 (525)
..+.+|||+...+.+-.+.|+.++++.+|.++|+.+. ...+||||+...++ .+++-|.+.|..+-.+.... ..
T Consensus 110 l~v~lpng~~i~i~~~~s~tt~~vl~~v~~kl~l~~e-~i~~f~lFlvr~~~~~~ls~vRkl~~fE~p~vs~t~~~--~~ 186 (407)
T KOG3784|consen 110 LDVFLPNGEKITINCLVSDTASLVLKSVCRKLGLPDE-LIGYFGLFLVRDNDPGNLSFVRKLADFESPYVSLTSNY--VS 186 (407)
T ss_pred EEEEccCCceEEEEEEecccHHHHHHHHHhhcCCchH-hhhheeeeEEeccCCCcceeeeeecccccccccccccc--cc
Confidence 3456899999999999999999999999999999974 46899999998542 23455555444332222211 12
Q ss_pred cEEEEEeeeccccCCc---ccchhhHHhhhhhhchhhhhccccccCCCCCCcchHHHHHHHHHHHHHhcCCCCCCChhhh
Q psy8450 299 VFYLIFCRSVWYFPLR---LDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRAADMSHPPAMKET 375 (525)
Q Consensus 299 ~~~l~frr~~~~~p~~---~d~~~~~~l~y~Q~~~d~l~G~~~~~~~~~~p~~~~~~~~~LaAl~~~~~d~~~~~~~~~l 375 (525)
...+.+|+-+|-.... .|+.+.++++|.|+..|+-+|+... +.++.-+|-|++
T Consensus 187 ~~~l~LRk~~~ds~~e~~L~d~~~~v~llY~Qav~D~~~g~~~~---------~~e~~~QL~slq--------------- 242 (407)
T KOG3784|consen 187 ACELLLRKWYWDSSRERALMDNRVAVNLLYVQAVQDIERGWVVP---------TKEQYDQLKSLQ--------------- 242 (407)
T ss_pred cccceeeeeeecchhhhHHhcCchHHHHHHHHHHHHHhcCceee---------chhhHHHHHHHH---------------
Confidence 3447888877754321 3566788899999999998887654 323322333332
Q ss_pred hhccCcccccccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCCceEEEEEe-e---CC-eEEEEE-ccCc
Q psy8450 376 KFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLFGSSFFAIKR-N---GD-QQILAL-NKHG 449 (525)
Q Consensus 376 ~~~lP~~~~~~~~~~~~~w~~~I~~~~~~l~g~s~~~Ak~~fL~~~~~~p~yGs~~F~v~~-~---~~-~~~LaI-n~~G 449 (525)
.+.-+.+||+++++++.||.-.|+--. . .| ++.+-+ |..=
T Consensus 243 ----------------------------------~q~~~~~fL~m~R~l~~Y~~l~f~~c~CD~p~kg~~~~~~~g~~~l 288 (407)
T KOG3784|consen 243 ----------------------------------EEESMKEFLELARTLEGYGYLIFDPCVCDYPEKGTPAVISVGNHEL 288 (407)
T ss_pred ----------------------------------HhhhHHHHHHHHHhhccCCeEecCccccCCCCCCCeEEEEEcchhh
Confidence 133466899999999999999998432 1 23 444444 3333
Q ss_pred eEEeecCc-cceEEEeecccceeccccccCCCceEEEEEec--ccccceEEEEecccHHHHHHHHHHHHHHH
Q psy8450 450 VHFLNLLT-HETISSVPYGDVISTRKVRAESGTLYLEMKCG--NLFQQRVARIQTDQAHEIARLIRQYMSLD 518 (525)
Q Consensus 450 i~~l~~~t-k~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g--~~~~~~~~~~~t~qa~ei~~LI~~Yi~~~ 518 (525)
++-..... +..-..|.|+++..|+... ..-...|+...+ ..-+.+=+.+.|+||.-|+..+++-+.-+
T Consensus 289 l~~~teegq~~q~i~F~~trmr~Wrvte-~~la~~FEy~~~~~~d~k~rWv~I~T~qa~lMs~Clq~m~~El 359 (407)
T KOG3784|consen 289 LLACTEEGQQNQEIAFRWTRMRCWRVTE-EGLAFSFEYLRDEVKDKKLRWVTIFTPQAILMSECLQSMVSEL 359 (407)
T ss_pred eeeeccCCCccceeEEEeeeeEeeeccH-HHHHHHHHHHHhhccccceeEEEEcCcHHHHHHHHHHHHHHHH
Confidence 33333332 2344569999999988652 112234443332 12245668899999999999888765433
No 14
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=99.03 E-value=8.3e-10 Score=88.47 Aligned_cols=80 Identities=20% Similarity=0.282 Sum_probs=63.5
Q ss_pred EecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhhhhHHHhhcCCcEEEEE
Q psy8450 225 YRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHKNQQVFYLIF 304 (525)
Q Consensus 225 v~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl~~~e~~~~~~~l~f 304 (525)
|+|+||+...+.+++.+|++|+++.||.++||.+. ++|||++....+...++|+.+..+.+.+.. ...++.|+|
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~---~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~---~~~~~~l~f 74 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEK---EYFGLQYQVDKDGEHHWLDLDKKLKKQLKK---NNPPFTLYF 74 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSG---GGEEEEE-EBTTSSEEEE-SSSBGGGSTBT---SSSSEEEEE
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCc---cEEEEEEeecCCCcceeccCcccHHHHcCC---CCCCEEEEE
Confidence 46899999999999999999999999999999987 899999932223345778888887766543 347899999
Q ss_pred eeeccc
Q psy8450 305 CRSVWY 310 (525)
Q Consensus 305 rr~~~~ 310 (525)
|+|+|.
T Consensus 75 rvkfy~ 80 (80)
T PF09379_consen 75 RVKFYP 80 (80)
T ss_dssp EESS--
T ss_pred EEEECC
Confidence 999873
No 15
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=98.94 E-value=4.4e-09 Score=83.05 Aligned_cols=81 Identities=12% Similarity=0.210 Sum_probs=72.2
Q ss_pred eeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhhhhHHHhhcCCcE
Q psy8450 221 KRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHKNQQVF 300 (525)
Q Consensus 221 ~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl~~~e~~~~~~ 300 (525)
.+. |+++||+.+++.|++..||+||++.++.+.++.+. .+|+|++..++-.++|.+.++|++.|+++.|.. +.+-
T Consensus 4 vvk-v~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~---~~W~LvE~~P~l~lER~~EDHE~vvdvl~~W~~-~~~n 78 (85)
T cd01787 4 VVK-VYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDD---SSWTLVEHLPHLQLERLFEDHELVVEVLSTWHS-AGNS 78 (85)
T ss_pred EEE-EEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCC---CCeEEEEecchhhhhhhccchHHHHHHHHhccc-CCCc
Confidence 345 56899999999999999999999999999999987 799999998776789999999999999999987 5566
Q ss_pred EEEEee
Q psy8450 301 YLIFCR 306 (525)
Q Consensus 301 ~l~frr 306 (525)
.|+|+|
T Consensus 79 ~l~f~k 84 (85)
T cd01787 79 VLFFRK 84 (85)
T ss_pred EEEEec
Confidence 788876
No 16
>KOG3531|consensus
Probab=98.55 E-value=4.8e-08 Score=104.76 Aligned_cols=225 Identities=16% Similarity=0.171 Sum_probs=166.5
Q ss_pred CCceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhhhhHHHhhcC
Q psy8450 218 RNSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHKNQ 297 (525)
Q Consensus 218 ~~~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl~~~e~~~ 297 (525)
+.....++.+ |++...+.|....-++-+++++|.+|+|-+. ++|||=...-+ ..+.||+...-|. .+... .
T Consensus 38 k~~~~~~~~~-~~~~~~f~~~~ka~g~vll~~vc~~lnl~e~---dyfglef~~~~-~~~~wld~~kpi~---rqi~~-~ 108 (1036)
T KOG3531|consen 38 KICFFFCVML-DDTTEVFLVQHKAIGQVLLDQVCRHLNLVEC---DYFGLEFQDIN-GNHCWLDLEKPIL---RQIRR-P 108 (1036)
T ss_pred ceEEEEEEEe-cCceeEEeecccccchHHHHHHHHhhceeec---cccceeecccc-CceEEecccchHH---HHhcC-c
Confidence 3344455445 5666789999999999999999999999997 89999776422 2355665544443 33322 2
Q ss_pred CcEEEEEeeeccc-cCCcccchhhHHhhhhhhchhhhhccccccCCCCCCcchHHHHHHHHHHHHHh--cCCCCCCChh-
Q psy8450 298 QVFYLIFCRSVWY-FPLRLDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRA--ADMSHPPAMK- 373 (525)
Q Consensus 298 ~~~~l~frr~~~~-~p~~~d~~~~~~l~y~Q~~~d~l~G~~~~~~~~~~p~~~~~~~~~LaAl~~~~--~d~~~~~~~~- 373 (525)
.+..+.|-.++|. +|..+..+.+..+.-.|...|...|...| ....++.|++.+.+. +|+...+...
T Consensus 109 ~~~~~~~~vkf~~p~~~~l~ee~trylf~~q~k~dl~~G~l~c---------~d~ta~lLss~~~qse~gdf~~~~d~~~ 179 (1036)
T KOG3531|consen 109 KDVVLRFVVKFFPPDPIQLQEEYTRYLFALQIKRDLALGRLTC---------NDTTAALLSSHIVQSEIGDFDEYLDREH 179 (1036)
T ss_pred cchhhheeecccCCCccccchhHHHHhhhhccccccccCCccC---------CCchhhhhhcccccccCCchhcccccee
Confidence 3445667777775 46654444455555579999999999988 445778888887764 5654333322
Q ss_pred -hhhhccCcccccccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCCceEEEEEeeCC-eEEEEEccCceE
Q psy8450 374 -ETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLFGSSFFAIKRNGD-QQILALNKHGVH 451 (525)
Q Consensus 374 -~l~~~lP~~~~~~~~~~~~~w~~~I~~~~~~l~g~s~~~Ak~~fL~~~~~~p~yGs~~F~v~~~~~-~~~LaIn~~Gi~ 451 (525)
....|+|..+ ...++|..-|+++.|+++.++-.+-|++.+++.+||..+..+++..+ +.-+||-.-||.
T Consensus 180 l~~~~~~p~q~---------~~~~ki~~~h~~hig~tpaesdl~~le~ar~~~~yg~~~h~a~D~Eg~~~~lav~hmgi~ 250 (1036)
T KOG3531|consen 180 LAHTRYLPNQD---------ELEKKIMEFHQKHIGQTPAESDFQLLEIARRLDMYGIRLHPAKDREGTKINLAVAHMGIL 250 (1036)
T ss_pred eeeeecCchHH---------HHHHHHHHhhhhhhccCchhhhHHHHHHHHHHhhhccccchhhhcccchHHHHHHhhhhH
Confidence 3456788653 34789999999999999999999999999999999999999999887 788889999999
Q ss_pred EeecCccceEEEeeccccee
Q psy8450 452 FLNLLTHETISSVPYGDVIS 471 (525)
Q Consensus 452 ~l~~~tk~~l~~~~~~~I~s 471 (525)
++.--+| +.++.|..|..
T Consensus 251 Vfr~~tk--inTf~wAkirk 268 (1036)
T KOG3531|consen 251 VFRGLTK--INTFNWAKIRK 268 (1036)
T ss_pred HHhccee--ccCCCHHHHHH
Confidence 9876654 77888888875
No 17
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=98.48 E-value=8e-07 Score=73.10 Aligned_cols=84 Identities=18% Similarity=0.217 Sum_probs=69.3
Q ss_pred eeeEEecCCCc----EEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhhhhHHHhhc
Q psy8450 221 KRQLYRLPGGS----ETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHKN 296 (525)
Q Consensus 221 ~~~iv~lpdg~----~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl~~~e~~ 296 (525)
.++| +..+++ .+++.|.+.||++||++.+++++|+.+. ...|+|++....+..++.|.+++.++++...|.+.
T Consensus 4 ~lrV-y~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~--~~~y~L~~~~~~~~~er~L~~~E~pl~i~~~~~~~ 80 (93)
T PF00788_consen 4 VLRV-YDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAED--PSDYCLVEVEESGGEERPLDDDECPLQIQLQWPKD 80 (93)
T ss_dssp EEEE-EETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSS--GGGEEEEEEECTTTEEEEETTTSBHHHHHHTTSSG
T ss_pred EEEE-EcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCC--CCCEEEEEEEcCCCEEEEcCCCCchHHHHHhCccc
Confidence 3454 466777 9999999999999999999999999333 27999985554556789999999999999999876
Q ss_pred CCcEEEEEeee
Q psy8450 297 QQVFYLIFCRS 307 (525)
Q Consensus 297 ~~~~~l~frr~ 307 (525)
....+|++|++
T Consensus 81 ~~~~~f~lr~~ 91 (93)
T PF00788_consen 81 SQNSRFVLRRK 91 (93)
T ss_dssp TTTEEEEEEEC
T ss_pred cCceEEEEEEc
Confidence 66889999875
No 18
>KOG3727|consensus
Probab=98.47 E-value=2e-07 Score=96.17 Aligned_cols=125 Identities=16% Similarity=0.256 Sum_probs=104.7
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCCceEEEEEeeCC--eEEEEEccCceEEeecCccceEEEee
Q psy8450 388 DIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLFGSSFFAIKRNGD--QQILALNKHGVHFLNLLTHETISSVP 465 (525)
Q Consensus 388 ~~~~~~w~~~I~~~~~~l~g~s~~~Ak~~fL~~~~~~p~yGs~~F~v~~~~~--~~~LaIn~~Gi~~l~~~tk~~l~~~~ 465 (525)
..+.+++.++|.++|+.++-+|-.|||..||+.-+++|-||-++|-|+..+. .=+|||..+-+..+|..|+..+.++.
T Consensus 513 k~ksKQ~~~RILEAHqNVaQlsl~EAKLrfIQAWQSLPeFGityfivRFkGsrKeEllGVA~NRLirmDlatGd~iKTWR 592 (664)
T KOG3727|consen 513 KLKSKQITQRILEAHQNVAQLSLTEAKLRFIQAWQSLPEFGITYFIVRFKGSRKEELLGVAYNRLIRMDLATGDHIKTWR 592 (664)
T ss_pred HHhhHHHHHHHHHHhhhHhhhhhHHHHHHHHHHHhhccccCcEEEEEEecCcchHHHHhhhhhheeeeecccCCceeeee
Confidence 3445678999999999999999999999999999999999999999998776 67899999999999999999999999
Q ss_pred cccceeccccccCCCceEEEEEecccccceEEEEecccHHHHHHHHHHHHH
Q psy8450 466 YGDVISTRKVRAESGTLYLEMKCGNLFQQRVARIQTDQAHEIARLIRQYMS 516 (525)
Q Consensus 466 ~~~I~s~~~~~~~~~~~~~~i~~g~~~~~~~~~~~t~qa~ei~~LI~~Yi~ 516 (525)
|+.+..|... |+-+.+.++ +.+- ....|.|.+....-.-..|.+||-
T Consensus 593 fsnMKqWNVN-Weir~v~Ie--F~de-v~iaFsc~SADCKVVHEfIGGYIF 639 (664)
T KOG3727|consen 593 FSNMKQWNVN-WEIRQVMIE--FEDE-VNIAFSCLSADCKVVHEFIGGYIF 639 (664)
T ss_pred ecchhhhccc-ceeeEEEEE--eccc-ceEEEEeecccchhhhhhccceEE
Confidence 9999998765 554434444 3332 225788888888888888888874
No 19
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=98.32 E-value=3.7e-06 Score=68.43 Aligned_cols=77 Identities=13% Similarity=0.321 Sum_probs=66.5
Q ss_pred CCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhhhhHHHhhcCCcEEEEEeee
Q psy8450 229 GGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHKNQQVFYLIFCRS 307 (525)
Q Consensus 229 dg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl~~~e~~~~~~~l~frr~ 307 (525)
+++.+++.|.+.+|+.||++.+.++.|+.+.. ..|+|++...+...++.|.+++..+++...|........|++|++
T Consensus 11 ~~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~--~~y~L~ev~~~~~~er~L~~~e~pl~~~~~~~~~~~~~~F~lr~~ 87 (87)
T cd01768 11 GGTYKTLRVSKDTTAQDVIQQLLKKFGLDDDP--EDYALVEVLGDGGLERLLLPDECPLQIQLNAPRQREDLRFLLRKR 87 (87)
T ss_pred CccEEEEEECCCCCHHHHHHHHHHHhCCcCCc--ccEEEEEEECCceEEEEeCCCCChHHHHHhcCCCCCcEEEEEecC
Confidence 49999999999999999999999999999532 799999998665678999999999999888877667778888763
No 20
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=98.23 E-value=4.9e-06 Score=68.18 Aligned_cols=77 Identities=17% Similarity=0.305 Sum_probs=66.4
Q ss_pred CCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhhhhHHHhhcCCcEEEEEeee
Q psy8450 228 PGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHKNQQVFYLIFCRS 307 (525)
Q Consensus 228 pdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl~~~e~~~~~~~l~frr~ 307 (525)
++++.+++.|.+.||++||++.++++.|+.+.. ..|+|++...+ ..++.|.++++.++++..|.+.....++++|++
T Consensus 13 ~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~--~~y~L~e~~~~-~~er~L~~~e~Pl~~~~~~~~~~~~~~f~lr~~ 89 (90)
T smart00314 13 PGGTYKTLRVSSRTTARDVIQQLLEKFHLTDDP--EEYVLVEVLPD-GKERVLPDDENPLQLQKLWPRRGPNLRFVLRKR 89 (90)
T ss_pred CCCcEEEEEECCCCCHHHHHHHHHHHhCCCCCc--ccEEEEEEeCC-cEEEEeCCCCcceEehhhCCCCCCcEEEEEEeC
Confidence 459999999999999999999999999998842 79999999733 457899999999999999976666788888874
No 21
>cd00836 FERM_C FERM_C domain. The FERM_C domain is the third structural domain within the FERM domain. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM_C domain is also found in protein tyrosine phosphatases (PTPs), the tyrosine kinases FAKand JAK, in addition to other proteins involved in signaling. This domain is structuraly similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites.
Probab=98.23 E-value=1.7e-05 Score=65.30 Aligned_cols=81 Identities=15% Similarity=0.239 Sum_probs=59.3
Q ss_pred CCCceEEEEEeeCC-eEEEEEccCceEEeecCccceEEEeecccceeccccccCCCceEEEEEeccc-ccceEEEEeccc
Q psy8450 426 LFGSSFFAIKRNGD-QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNL-FQQRVARIQTDQ 503 (525)
Q Consensus 426 ~yGs~~F~v~~~~~-~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~-~~~~~~~~~t~q 503 (525)
+||..+|.|+...+ +++|||++.||.+++... ++..+||++|.++.- +.+..++++ .+. .....+.|.++.
T Consensus 1 ~YGv~~~~vkd~~g~~~~lGV~~~Gi~v~~~~~--~~~~f~W~~I~~isf---~~k~F~i~~--~~~~~~~~~~~f~~~s 73 (92)
T cd00836 1 MYGVDLHPVKDKKGTELLLGVTAEGILVYDDGT--PINEFPWPEIRKISF---KRKKFTLKV--RDKDGQEITLSFQTPS 73 (92)
T ss_pred CCCeeeEEEECCCCCeEEEEEeCCCcEEecCCC--EEEEEEcccceEEEE---cCCEEEEEE--ecCcCceeeEEEECCC
Confidence 69999999998877 999999999999999664 889999999998642 344444544 332 234678888885
Q ss_pred HHHHHHHHHH
Q psy8450 504 AHEIARLIRQ 513 (525)
Q Consensus 504 a~ei~~LI~~ 513 (525)
...-..|...
T Consensus 74 ~~~~k~lwk~ 83 (92)
T cd00836 74 HRACKYLWKL 83 (92)
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 22
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=97.78 E-value=0.00011 Score=57.02 Aligned_cols=74 Identities=26% Similarity=0.448 Sum_probs=58.7
Q ss_pred CCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhhhhHHHhhc--CCcEEEEEe
Q psy8450 228 PGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHKN--QQVFYLIFC 305 (525)
Q Consensus 228 pdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl~~~e~~--~~~~~l~fr 305 (525)
+|.+.+++.|.+.+|++||+..+|+++++.++ +.||||...+| .+..|.++++...+-+++-.. ...+.|.+|
T Consensus 11 sgct~KTL~V~P~~tt~~vc~lcA~Kf~V~qP---e~y~LFl~vdg--~~~qLadd~~Pq~ika~L~~~~~~~~fhfvYr 85 (87)
T cd01776 11 SGCTGKTLLVRPYITTEDVCQLCAEKFKVTQP---EEYSLFLFVEE--TWQQLAPDTYPQRIKAELHSRPQPNTFHFVYR 85 (87)
T ss_pred CCceeeeeecCCCCcHHHHHHHHHHHhccCCh---hheeEEEEECC--cEEEcCcccccceechhhccCCCCcceEEEEe
Confidence 57788999999999999999999999999999 79999999854 367788888776665555322 345666666
Q ss_pred e
Q psy8450 306 R 306 (525)
Q Consensus 306 r 306 (525)
|
T Consensus 86 r 86 (87)
T cd01776 86 R 86 (87)
T ss_pred c
Confidence 5
No 23
>KOG4229|consensus
Probab=97.62 E-value=1.5e-07 Score=106.63 Aligned_cols=153 Identities=20% Similarity=0.111 Sum_probs=110.7
Q ss_pred ccccccccCCCCCccCCCCchHHHHHHHHHHHHhhcCCCCCC-CCcchhHHHHHHHHhhhCCCCCchHHHHHHHHHhcCC
Q psy8450 60 DLVKFTCVPISEPLLKLEPPLAEIAVECFECIMRFMGDLPTT-PDLTEVKCVYTILMHCHTHEPLRDEVYCQLMKQTTSN 138 (525)
Q Consensus 60 ~~l~~~~~pi~~pLl~~~~~~~~~A~~~F~~il~~mgd~~~~-~~~~~~~~~~~il~~~~~~~~LrDEiy~Qi~KQ~t~n 138 (525)
...+|++.+|.+++..+...++..+...|..+.+|||+++.+ .+..+. .+..+ .++....++++-++|.|.+...|
T Consensus 81 l~~R~~~~~Iy~y~gsil~~lnp~~~~~fiy~~~~~~ly~~~~~ge~~p-hifa~--ad~~y~~m~~~~~~QcivisGes 157 (1062)
T KOG4229|consen 81 LLVRYKRNPIYEYLGSILVALNPLQPIPFLYLPRFSKLYSGKPLGEDPP-HIFAI--ADLAYQDMLREKEDQCIVISGES 157 (1062)
T ss_pred HHHHHccCCceeeechhhhhcCccccccccccHHhhccccccccCCCCc-chhhh--hhhHHHhhhhhccceeEEEeccc
Confidence 345888999999999999899999999999999999999832 232222 34433 34556778887777777777666
Q ss_pred CC---hhhhHHHHHHHHhh-cccCCCcchHHHHHHHHhhhhh---cccccchhHHHHHHHHHHhhhhcCCCCCCCCHHHH
Q psy8450 139 KT---ESCQRGWRLLSIVA-AYFTCSDTLRPFLLKYLETAAY---DKRRAFHGTASVCLQNLRKTLRYGGRKNVPSVEEV 211 (525)
Q Consensus 139 ~~---~~~~r~W~Ll~l~~-~~f~PS~~l~~~l~~~l~~~~~---~~~~~~~~~a~~c~~~L~r~~~~g~R~~~Ps~~Ei 211 (525)
-+ +++.++|++|+++. +.++|.......+-..|....+ ..+...+.+.++|.-.++++-..++++..+...|-
T Consensus 158 gsGktest~l~~~~Ls~Lsq~~~~~~e~~il~a~~llEafgnA~t~~ndnssrfgk~i~~~~~~~g~i~Gaki~~yllEK 237 (1062)
T KOG4229|consen 158 GSGKTESTKLLWQFLSILSQGNNSPVEQLILSANPLLEAFGNAKTPRNDNSSRFGKYIKVNFRKTGIIEGAKIVEYLLEK 237 (1062)
T ss_pred CCCCchhhHHHHHHHHHHhcCCCCchhhhhhcchHHHHHhcccCCcccCchhhhhheEEeccccCCCCCcchHHHHHHHH
Confidence 54 99999999999999 8889988765444444443221 11122345677788788877777788888888888
Q ss_pred HHHH
Q psy8450 212 TAVS 215 (525)
Q Consensus 212 ~a~~ 215 (525)
..+.
T Consensus 238 sr~~ 241 (1062)
T KOG4229|consen 238 SRLV 241 (1062)
T ss_pred HHHH
Confidence 7743
No 24
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=97.54 E-value=0.00015 Score=57.62 Aligned_cols=61 Identities=13% Similarity=0.340 Sum_probs=51.3
Q ss_pred eeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcch
Q psy8450 222 RQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEY 285 (525)
Q Consensus 222 ~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~ 285 (525)
.. +.+|||+...|.+..+.++.+|.+.+|+++||++.- +.+||||+..+ -.++|-|.+.|.
T Consensus 4 L~-V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~-~~YFaLFev~~-~~f~RKL~dfE~ 64 (87)
T cd01777 4 LR-IALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYT-QNYFALFEVIN-HSFVRKLAPNEF 64 (87)
T ss_pred EE-EEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHH-HhheeeeEEec-ceEEEeccCccC
Confidence 44 469999999999999999999999999999999864 68999999974 346777766654
No 25
>PF02174 IRS: PTB domain (IRS-1 type); InterPro: IPR002404 Insulin receptor substrate-1 proteins contain both a pleckstrin homology domain IPR001849 from INTERPRO and a phosphotyrosine binding (PTB) domain. These domains facilitate interaction with the activated tyrosine-phosphorylated insulin receptor. The PTB domain is situated towards the N terminus. Two arginines in this domain are responsible for hydrogen bonding phosphotyrosine residues on a Ac-LYASSNPApY-NH2 peptide in the juxtamembrane region of the insulin receptor. Further interactions via `bridged' water molecules are coordinated by residues an Asn and a Ser residue []. The PTB domain has a compact, 7-stranded beta-sandwich structure, capped by a C-terminal helix. The substrate peptide fits into an L-shaped surface cleft formed from the C-terminal helix and strands 5 and 6 [].; GO: 0005158 insulin receptor binding; PDB: 1XR0_B 1QQG_B 1IRS_A 2V76_D 1MK7_B 2K00_A 1MIZ_B 1MK9_B 1MIX_A 2H7E_A ....
Probab=97.40 E-value=0.0021 Score=53.58 Aligned_cols=75 Identities=16% Similarity=0.240 Sum_probs=63.3
Q ss_pred eEEEEEccCceEEeecCccceEEEeecccceeccccccCCCceEEEEEecc--cccceEEEEecccHHHHHHHHHHHHHH
Q psy8450 440 QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGN--LFQQRVARIQTDQAHEIARLIRQYMSL 517 (525)
Q Consensus 440 ~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~--~~~~~~~~~~t~qa~ei~~LI~~Yi~~ 517 (525)
+.+|-|....+.+.++.+++++..+||..|.+++. +++ .|.+..|. ...+..|.|+|++|.+|...|..+|+.
T Consensus 23 ~~~L~l~~~~l~L~~~~~~~~~~~Wpl~~lRryG~---~~~--~F~fEaGRrc~tG~G~f~f~t~~a~~I~~~v~~~i~~ 97 (100)
T PF02174_consen 23 PYLLCLTPDELILIDPQSGEPILEWPLRYLRRYGR---DDG--IFSFEAGRRCPTGEGLFWFQTPDAEEIFETVERAIKA 97 (100)
T ss_dssp EEEEEEESSEEEEEETTTTEEEEEEEGGGEEEEEE---ETT--EEEEEESTTSTTCSEEEEEEESTHHHHHHHHHHHHHH
T ss_pred EEEEEECCCEEEEecCCCCceEEEEEhHHhhhhcc---CCC--EEEEEECCcCCCCCcEEEEEeCCHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999875 234 44555663 333578999999999999999999987
Q ss_pred Hh
Q psy8450 518 DR 519 (525)
Q Consensus 518 ~~ 519 (525)
+.
T Consensus 98 ~~ 99 (100)
T PF02174_consen 98 QK 99 (100)
T ss_dssp HH
T ss_pred hh
Confidence 65
No 26
>cd01778 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour supproessor protein. RASSF1 (also known as RASSF3 and NORE1) is a tumour suppressor protein with a C-terminal Ras-associating (RA) domain that binds Ras. RASSF1 also binds the proapoptotic protein kinase MST1 and is thus thought to regulate the proapoptotic signalling pathway. RASSF1 also associates with microtubule-associated proteins like MAP1B and regulates tubulin polymerization. RASSF1 also binds CDC20 and regulates mitosis by inhibiting the anaphase-promoting complex and preventing degradation of cyclin A and cyclin B until the spindle checkpoint becomes fully operational.
Probab=97.35 E-value=0.0007 Score=54.96 Aligned_cols=60 Identities=18% Similarity=0.308 Sum_probs=48.6
Q ss_pred EecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEE-c-CCceeecCCCcchh
Q psy8450 225 YRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIV-E-GDAFTMPLAKEEYI 286 (525)
Q Consensus 225 v~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~-~-~~~~~~~L~~~~~i 286 (525)
+++|-|+...+.|.|.||+.||++.+.++..+.+.. ..||||+.. . |+...+-|.++|+-
T Consensus 11 f~lp~~s~k~v~IsS~tTt~eVI~~LL~KF~v~~nP--~kFALYe~~h~~ge~~~rkL~d~E~P 72 (96)
T cd01778 11 LPLPKDTAKHLHISSKTTVREVIEALLKKFLVVDNP--RKFALFEREHRTGQVYLRKLSDDECP 72 (96)
T ss_pred EeccCCceeEEEEecCCcHHHHHHHHHHhheeccCC--cceEEEEEEecCCcEEEEECCCCCCC
Confidence 568999999999999999999999999999998874 799999753 2 33335667766653
No 27
>KOG3751|consensus
Probab=97.22 E-value=0.00066 Score=70.39 Aligned_cols=84 Identities=12% Similarity=0.161 Sum_probs=70.9
Q ss_pred ceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhhhhHHHhhcCCc
Q psy8450 220 SKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHKNQQV 299 (525)
Q Consensus 220 ~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl~~~e~~~~~ 299 (525)
..+. |+..||+.+.+.||...||+|||+.++++-..... ..|+|++....=.++|.+.++|.|.|+++.|-. +.+
T Consensus 189 lvVK-vfseDgasksL~Vder~tardV~~lL~eKnH~~~d---~~W~LvEh~P~L~iER~fEDHElVVEvls~W~~-dse 263 (622)
T KOG3751|consen 189 LVVK-VFSEDGASKSLLVDERMTARDVCQLLAEKNHCADD---EDWCLVEHYPHLQIERVFEDHELVVEVLSMWTQ-DSE 263 (622)
T ss_pred eeEE-EEccCCceeeEeecccccHHHHHHHHHHhhhhhcc---cceeeeeecchhhhhhhhhhHHHHHHHHhhccc-CCC
Confidence 4444 56889999999999999999999999999877765 789999987655678999999999999999976 455
Q ss_pred EEEEEeeec
Q psy8450 300 FYLIFCRSV 308 (525)
Q Consensus 300 ~~l~frr~~ 308 (525)
-+|+||+++
T Consensus 264 NK~lF~k~~ 272 (622)
T KOG3751|consen 264 NKLLFRKNP 272 (622)
T ss_pred ceeEEeecc
Confidence 688898765
No 28
>cd01203 DOK_PTB Downstream of tyrosine kinase (DOK) Phosphotyrosine-binding domain. Downstream of tyrosine kinase (DOK) Phosphotyrosine-binding domain. This domain has a PH-like fold and is similiar to the PTB domain that is found in insulin receptor substrate molecules The DOK family of eukaryotic signaling molecules have an N-terminal PH domain, followed by an IRS-like PTB domain. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=97.17 E-value=0.0052 Score=50.73 Aligned_cols=76 Identities=16% Similarity=0.218 Sum_probs=62.8
Q ss_pred eEEEEEccCceEEeecCccceEEEeecccceeccccccCCCceEEEEEecc--cccceEEEEecccHHHHHHHHHHHHHH
Q psy8450 440 QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGN--LFQQRVARIQTDQAHEIARLIRQYMSL 517 (525)
Q Consensus 440 ~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~--~~~~~~~~~~t~qa~ei~~LI~~Yi~~ 517 (525)
+.+|-|..+.+.+.|+++.+++..+||.-|.+++. +.+ .|.+.-|. ..-+..|.|.|++|++|.+.|.+.|+.
T Consensus 22 ~y~L~v~~~~l~L~d~~~~~~l~~WP~~~LRryG~---d~~--~FsFEAGRrC~tGeG~f~F~t~~~~~if~~v~~~i~~ 96 (104)
T cd01203 22 SYMLRMGPTELQLKSEDLGATLYMWPYRFLRKYGR---DKG--KFSFEAGRRCTSGEGVFTFDTTQGNEIFRAVEAAIKS 96 (104)
T ss_pred eEEEEEcCCEEEEEcCCCCcEEEEeehHhhhhhcc---cCC--EEEEEecCcCCCCCcEEEEecCCHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999875 233 34444553 233568999999999999999999987
Q ss_pred Hhh
Q psy8450 518 DRQ 520 (525)
Q Consensus 518 ~~~ 520 (525)
..+
T Consensus 97 q~~ 99 (104)
T cd01203 97 QKK 99 (104)
T ss_pred HHh
Confidence 654
No 29
>cd00824 PTBI IRS-like phosphotyrosine-binding domain. IRS-like phosphotyrosine-binding domain (PTBi); This domain has a PH-like fold and is found in insulin receptor substrate molecules and in other eukaryotic signaling molecules such as FRS2 and Dok. IRS and Dok molecules have an N-terminal PH domain, which is followed by an IRS-like PTB domain. FRS2 just has an N-terminal PTBi domain. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=97.07 E-value=0.0048 Score=51.54 Aligned_cols=77 Identities=16% Similarity=0.144 Sum_probs=64.1
Q ss_pred eEEEEEccCceEEeecCccceEEEeecccceeccccccCCCceEEEEEecc--cccceEEEEecccHHHHHHHHHHHHHH
Q psy8450 440 QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGN--LFQQRVARIQTDQAHEIARLIRQYMSL 517 (525)
Q Consensus 440 ~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~--~~~~~~~~~~t~qa~ei~~LI~~Yi~~ 517 (525)
+.+|-++.+++.+.++++..++..+||..|.+++.. + ..|.+..|- ..-+-.|.|+|+++.+|.+.|.++|..
T Consensus 22 ~y~L~lt~~~l~L~~~~~~~~~~~wpl~~lRRyG~~---~--~~FsfEaGRrc~tG~G~f~f~t~~~~~I~~~v~~~i~~ 96 (104)
T cd00824 22 SYRLCLTSKELTLVKLGSRVALVVWPLMFLRRYGYD---S--NLFSFEAGRRCVTGEGIFTFQTDRAEEIFQNVHETILA 96 (104)
T ss_pred eEEEEECCCEEEEEecCCCceEEEeehHHeeecccC---C--CEEEEEccCcCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999998753 3 345555562 233568999999999999999999988
Q ss_pred Hhhh
Q psy8450 518 DRQK 521 (525)
Q Consensus 518 ~~~~ 521 (525)
....
T Consensus 97 ~~~~ 100 (104)
T cd00824 97 AMKA 100 (104)
T ss_pred HHHh
Confidence 7653
No 30
>KOG4371|consensus
Probab=96.98 E-value=0.00047 Score=76.50 Aligned_cols=213 Identities=16% Similarity=0.201 Sum_probs=140.9
Q ss_pred HHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhh-hhHHHhh-----cCCcEEEEEeeeccccCCcc--
Q psy8450 244 EDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILD-VTTELHK-----NQQVFYLIFCRSVWYFPLRL-- 315 (525)
Q Consensus 244 ~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~D-vl~~~e~-----~~~~~~l~frr~~~~~p~~~-- 315 (525)
+||....|.-+.+++. -.|||-...+++.+. ....+.++- ..++|.. .+.++.+.++.+++..-+..
T Consensus 531 ~dv~~~pi~~~~iss~---~~fGlS~~~dneh~~--~e~~drLls~sasewk~~As~~~~PP~~~h~rv~~y~s~l~~is 605 (1332)
T KOG4371|consen 531 RDVFSLPIQNMNISSH---VFFGLSFLRDNEHYF--IEDHDRLLSFSASEWKSVASVGVKPPYVLHLRVKFYPSILDFIS 605 (1332)
T ss_pred ccccCCcccceecccc---eEeeceeecCCcchh--hcchHHHHhcCchhhHHHhhcccCCCeEEEEEEEeccccCcchh
Confidence 4554455666677776 467776655443211 112222222 2345543 13578888988888654321
Q ss_pred c--chhhHHhhhhhhchhhhhccccccCCCCCCcchHHHHHHHHHHHHHhcCCCCCCC-----hhhhhhccCcccccccC
Q psy8450 316 D--CQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRAADMSHPPA-----MKETKFLLPKPALTQRD 388 (525)
Q Consensus 316 d--~~~~~~l~y~Q~~~d~l~G~~~~~~~~~~p~~~~~~~~~LaAl~~~~~d~~~~~~-----~~~l~~~lP~~~~~~~~ 388 (525)
+ .+.+..-+|.|...++++....- ..+-+-++||+..++...+..++ .-+.+.|+|.-+.. .
T Consensus 606 ~~~akltrse~Y~~~q~qvLeeq~V~---------~~da~f~laaFalqadsGNr~~n~~~gdysdP~hY~ps~yss--~ 674 (1332)
T KOG4371|consen 606 TDVAKLTRSELYLQCQRQVLEEQIVP---------KRDAAFELAAFALQADSGNRPPNPVIGDYSDPQHYLPSKYSS--F 674 (1332)
T ss_pred hhhhhhhhhHHHHhhhHHHHhhcccc---------cchhhhhHHhhhhhhhcCCCCCCccccccCChhhhcccceec--c
Confidence 1 13458889999999999987754 55677889998888643333321 24677888876543 2
Q ss_pred CCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCCceEEEEEee------------CCeEEEEEccCceEEeecC
Q psy8450 389 IKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLFGSSFFAIKRN------------GDQQILALNKHGVHFLNLL 456 (525)
Q Consensus 389 ~~~~~w~~~I~~~~~~l~g~s~~~Ak~~fL~~~~~~p~yGs~~F~v~~~------------~~~~~LaIn~~Gi~~l~~~ 456 (525)
....-+.+.+-..|...-+.+..+|...|++++...|-|+++++.+-.. +++.|+|+...||.++.+.
T Consensus 675 e~q~li~~~~p~~Hg~~~~t~aseah~kYV~~p~r~pd~e~h~qp~f~~kP~sar~~kt~~~~pp~~gp~prgIsi~~p~ 754 (1332)
T KOG4371|consen 675 EDQSLIKNILPELHGHYAGTRASEAHHKYVQIPQRHPDFEAHVQPVFRTKPTSARPFKTDTGSPPWIGPMPRGISIYEPQ 754 (1332)
T ss_pred cchhhhhhccccccCchhhcchhhccCcceecccCCCCccceeccccCCCCcccCcCcCCCCCCccccccccceeccccC
Confidence 2222233333344555557888999999999999999999999987432 1289999999999999887
Q ss_pred c--cceEEEeecccceec
Q psy8450 457 T--HETISSVPYGDVIST 472 (525)
Q Consensus 457 t--k~~l~~~~~~~I~s~ 472 (525)
. ++.+..+||..|...
T Consensus 755 ~~a~~~~a~fPpa~v~~l 772 (1332)
T KOG4371|consen 755 GGAREVIAEFPPAQVQTL 772 (1332)
T ss_pred CCCccccCCCCCCCCCce
Confidence 6 578899999998763
No 31
>cd01784 rasfadin_RA Ubiquitin-like domain of Rasfadin. rasfadin_RA Rasfadin (RASSF2) belongs to a family of Ras effectors/tumor suppressors that includes RASSF1 and NORE1. RASSF2 binds directly to K-Ras in a GTP-dependent manner via its RA (RAS-associated) domain. RASSF2 promotes apoptosis and cell cycle arrest and is frequently down-regulated in lung tumor cell lines
Probab=96.92 E-value=0.003 Score=50.03 Aligned_cols=58 Identities=24% Similarity=0.359 Sum_probs=48.3
Q ss_pred EecCC-CcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcch
Q psy8450 225 YRLPG-GSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEY 285 (525)
Q Consensus 225 v~lpd-g~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~ 285 (525)
+++|- |+...+-|.|.+|+.||++.+.++..+.+.. ..||||+....+. .+-|+.+|+
T Consensus 6 ~f~P~~gs~~~v~VsS~~tt~eVI~~LL~KFkv~~~p--~~FALy~vh~~Ge-~rkL~d~E~ 64 (87)
T cd01784 6 VFTPAYGSVTNVRINSTMTTPQVLKLLLNKFKIENSA--EEFALYIVHTSGE-KRKLKATDY 64 (87)
T ss_pred EeCCCCCceeEEEEecCCCHHHHHHHHHHhccccCCH--HHeEEEEEeeCCC-EEECCCcCC
Confidence 46888 9999999999999999999999999988764 8999999875443 466776665
No 32
>PF09380 FERM_C: FERM C-terminal PH-like domain; InterPro: IPR018980 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain []. This entry, however, represents the PH-like domain found at the C terminus of the eukaryote proteins moesin, ezrin and radixin.; PDB: 1NI2_B 3U8Z_B 1H4R_B 1ISN_A 3QIJ_B 1GG3_A 2HE7_A 3BIN_A 2I1J_A 2I1K_A ....
Probab=96.77 E-value=0.014 Score=47.66 Aligned_cols=74 Identities=7% Similarity=0.094 Sum_probs=52.0
Q ss_pred eEEEEEccCceEEeecCccceEEEeecccceeccccccCCCceEEEEEecccccceEEEEecccHHHHHHHHHHHHHHH
Q psy8450 440 QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNLFQQRVARIQTDQAHEIARLIRQYMSLD 518 (525)
Q Consensus 440 ~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~~~~~~~~~~t~qa~ei~~LI~~Yi~~~ 518 (525)
+++|||+..||.+++.+.+.....|+|++|.++.. ..+. |.|...+.....++.|.++....--.|....+..+
T Consensus 6 ~~~LGv~~~GI~i~~~~~~~~~~~f~W~~I~~l~~---~~k~--F~I~~~~~~~~~~~~f~~~~~~~aK~lw~~cv~~H 79 (90)
T PF09380_consen 6 PLWLGVSPRGISIYRDNNRISTQFFPWSEISKLSF---KKKK--FTIEVRDESKEIKLKFYTPSPKAAKYLWKLCVEQH 79 (90)
T ss_dssp EEEEEEESSEEEEEETTBSSSSEEEEGGGEEEEEE---ETTE--EEEEESSTSSSEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCEeEEEeCCCcccceeeehhheeEEEe---cccE--EEEEEeecccceEEEEEECCHHHHHHHHHHHHHHH
Confidence 89999999999999877553368999999998753 2333 44444322345788888888777777776666544
No 33
>smart00310 PTBI Phosphotyrosine-binding domain (IRS1-like).
Probab=96.71 E-value=0.012 Score=48.39 Aligned_cols=75 Identities=16% Similarity=0.142 Sum_probs=62.0
Q ss_pred eEEEEEccCceEEeecCccceEEEeecccceeccccccCCCceEEEEEecc--cccceEEEEecccHHHHHHHHHHHHHH
Q psy8450 440 QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGN--LFQQRVARIQTDQAHEIARLIRQYMSL 517 (525)
Q Consensus 440 ~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~--~~~~~~~~~~t~qa~ei~~LI~~Yi~~ 517 (525)
..+|-+..+.+.+.+.+++.++..+||..|.+++. +. ..|.+..|- ..-+-.|.|+|.+|++|.+.|.+.|+.
T Consensus 21 ~y~L~lt~~~L~L~~~~~~~~~~~wpl~~lRRyG~---~~--~~FsfEaGRrc~tG~G~f~f~t~~a~~i~~~v~~a~~~ 95 (98)
T smart00310 21 SYRLRLTSETLVLWRLNPRVELVVWPLLSLRRYGR---DK--NFFFFEAGRRCVSGPGEFTFQTVVAQEIFQLVLEAMQA 95 (98)
T ss_pred eEEEEECCcEEEEEecCCCccEEEeehhHeeeecC---CC--CEEEEEccCcCCCCCCEEEEEcCcHHHHHHHHHHHHHH
Confidence 68999999999999988889999999999999875 23 345555562 333568999999999999999999987
Q ss_pred Hh
Q psy8450 518 DR 519 (525)
Q Consensus 518 ~~ 519 (525)
+.
T Consensus 96 ~~ 97 (98)
T smart00310 96 QS 97 (98)
T ss_pred hh
Confidence 64
No 34
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=96.60 E-value=0.0054 Score=47.63 Aligned_cols=58 Identities=21% Similarity=0.333 Sum_probs=45.8
Q ss_pred EecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhh
Q psy8450 225 YRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILD 288 (525)
Q Consensus 225 v~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~D 288 (525)
++||||+...|.+.+..|++|++..+|++-||.. ..+.||....++ ..++..++...+
T Consensus 4 V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~----~~~~v~~~~~~~--~~~~~~~~d~~~ 61 (72)
T cd01760 4 VYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNP----ECCDVFLLGLDE--KKPLDLDTDSSS 61 (72)
T ss_pred EECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCH----HHEEEEEecCCC--cCCcCchhhhhh
Confidence 5799999999999999999999999999999986 479999885432 234444444433
No 35
>cd01781 AF6_RA_repeat2 Ubiquitin domain of AT-6, second repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=96.50 E-value=0.02 Score=47.10 Aligned_cols=79 Identities=13% Similarity=0.053 Sum_probs=63.5
Q ss_pred CCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcC---------CceeecCCCcchhhhhhHHHhhcCC
Q psy8450 228 PGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEG---------DAFTMPLAKEEYILDVTTELHKNQQ 298 (525)
Q Consensus 228 pdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~---------~~~~~~L~~~~~i~Dvl~~~e~~~~ 298 (525)
|+-.++++-+.+.+++.+|+.+...+.||.... .+.|.|..+..+ ..-+|.+.++|.-++++..|...++
T Consensus 13 ~~~~YKSIlvt~~~~a~~vV~eALeKygL~~e~-p~~Y~LveV~~~~~~~~~~~r~~~eRil~d~E~Pl~i~~~w~~~~g 91 (100)
T cd01781 13 PTRPYKTILLSINDNADRIVGEALEKYGLEKSD-PDDYCLVEVSNDDDRKSSDLREIDERILDDDECPLFIMTAGPGENG 91 (100)
T ss_pred CCCCeEEEEecCCccHHHHHHHHHHHhCCCccC-ccceEEEEEecccccccccccceeEEeCCCCcCHHHHHHhCCCccC
Confidence 677789999999999999999999999998753 479999998643 1346888899999999998876555
Q ss_pred cEEEEEeee
Q psy8450 299 VFYLIFCRS 307 (525)
Q Consensus 299 ~~~l~frr~ 307 (525)
...|.+||+
T Consensus 92 ~~~f~l~~r 100 (100)
T cd01781 92 FDSFLAIRR 100 (100)
T ss_pred ceeeEEecC
Confidence 556666654
No 36
>cd01783 DAGK_delta_RA Ubiquitin-like domain of Diacylgylcerol kinase (DAGK). DAGK_delta_RA Diacylgylcerol kinase (DAGK) phosphorylates the second messenger diacylglycerol to phosphatidic acid as part of a protein kinase C pathway. Nine mammalian DAGK isotypes have been identified, which are classified into five subgroups according to their domain architecture and the DAGK-delta and -theta isozymes, which fall into one such group, contain an RA (Ras-associated) domain. DAGKs also contain a conserved catalytic domain (DAGKc), an assesory domain (DAGKa), and an array of conserved motifs that are likely to play a role in lipid-protein and protein-protein interactions in various DAG/PA-dependent signalling pathways.
Probab=96.05 E-value=0.048 Score=44.61 Aligned_cols=66 Identities=21% Similarity=0.305 Sum_probs=54.5
Q ss_pred CCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEc-CCceeecCCCcchhhhhhHHHhh
Q psy8450 229 GGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVE-GDAFTMPLAKEEYILDVTTELHK 295 (525)
Q Consensus 229 dg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~-~~~~~~~L~~~~~i~Dvl~~~e~ 295 (525)
...+.++.|+..||+.|++.++..++|+.... .+.|.|.++.- .+..++.+.++|..+.++.+..+
T Consensus 15 ~~~y~sv~V~~~tt~~dvv~eaL~kfGl~~~~-~~~y~LvEV~ld~gv~ER~l~~~E~Pl~i~~~~r~ 81 (97)
T cd01783 15 GVAYVSIRVNKDTTVQDVILEVLPLFGLQAEC-PESFRLIEVLLDRGVVERTVLPQEKPLQIRLQLRK 81 (97)
T ss_pred CcceEEEEecccchHHHHHHHHHHHhCcccCC-ccccEEEEEEecCCeeeeeCCCccChHHHHHHhhh
Confidence 45567899999999999999999999998854 47999999873 34568999999998888776644
No 37
>cd01216 Fe65 Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Fe65 is an amyloid beta A4 precursor (APP) protein-binding. It contains an N-terminal WW domain followed by two PTB domains. The C-terminal PTB domain is responsible for APP binding. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=95.54 E-value=0.14 Score=44.28 Aligned_cols=81 Identities=10% Similarity=-0.009 Sum_probs=61.8
Q ss_pred eEEEEEccCceEEeecCccceEEEeecccceeccccccCCCceEEEEEecccccceEEEEec-ccHHHHHHHHHHHHHHH
Q psy8450 440 QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNLFQQRVARIQT-DQAHEIARLIRQYMSLD 518 (525)
Q Consensus 440 ~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~~~~~~~~~~t-~qa~ei~~LI~~Yi~~~ 518 (525)
++.|.|+..||.++|++|++++..+|...|.-|+.-+.+ ...-|..+.|+ ..-....|.. +.|.+|+.-|.+=+.+.
T Consensus 41 ~v~l~Vs~~~l~l~d~~t~~~l~~~~i~~Isf~~~gk~~-r~FafI~~~~~-~~~~CHVF~c~~~a~~i~~tv~~ac~l~ 118 (123)
T cd01216 41 DLNMDLAPSTLSLIDPDNLTVLHECRVRYLSFWGVGRDV-RDFAFIMRTER-RRFMCHVFRCEPNAGALATTVEAACKLR 118 (123)
T ss_pred EEEEEEecCcEEEEcCCCCeEEEEEEeeEEEEEEcCCCC-cEEEEEEEcCC-CeEEEEEEEcCCCHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999877654323 43445445454 2234555554 48999999999999888
Q ss_pred hhhc
Q psy8450 519 RQKN 522 (525)
Q Consensus 519 ~~~~ 522 (525)
.++.
T Consensus 119 y~k~ 122 (123)
T cd01216 119 YQKC 122 (123)
T ss_pred hhcc
Confidence 8764
No 38
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=95.50 E-value=0.037 Score=42.76 Aligned_cols=63 Identities=17% Similarity=0.099 Sum_probs=46.3
Q ss_pred EecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEc--CCceee-cCCCcchhhhhhH
Q psy8450 225 YRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVE--GDAFTM-PLAKEEYILDVTT 291 (525)
Q Consensus 225 v~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~--~~~~~~-~L~~~~~i~Dvl~ 291 (525)
|+||||....+.|.+..|+.|+++.+|++=|+... .+.|-+..- .+.... .-++.+++.|.+.
T Consensus 4 V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~----eh~Lrlk~~~~e~~~~~~~p~~~e~~~~~~~ 69 (77)
T cd01818 4 VCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPM----EHYLRLKFLRMENHEYFYIPNPLEDIYDLLY 69 (77)
T ss_pred EECCCCceEEEEECCCCCHHHHHHHHHHhcCCChh----HheeEEEEEecCCccEEEcCChHHHHHHhhh
Confidence 68999999999999999999999999999999874 577776642 122211 1144566666654
No 39
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=95.48 E-value=0.053 Score=45.41 Aligned_cols=79 Identities=14% Similarity=0.232 Sum_probs=46.0
Q ss_pred EEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEc---CCceeecCCCcchhhhhhHHHhhcCCcE
Q psy8450 224 LYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVE---GDAFTMPLAKEEYILDVTTELHKNQQVF 300 (525)
Q Consensus 224 iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~---~~~~~~~L~~~~~i~Dvl~~~e~~~~~~ 300 (525)
.|...||+.+.|+|..++++.||...+.+++|+.+.. ..|..|+.+. ++...++|.+.|. +++-.. ......-
T Consensus 4 ~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~~~--~~~~~~v~d~~~~~~~~~~~LsD~EL-~~IC~s-~~r~er~ 79 (105)
T PF14847_consen 4 RFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPEHP--RNYCFYVLDGESPDPSNCRPLSDVEL-VTICHS-PDRPERN 79 (105)
T ss_dssp EEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS--C--CCEEEEEE-S-----SSEEEE-SSHH-HHHHHT-T--SSS-
T ss_pred EEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcccc--ccceEEEecccccccccceECcHHHH-HHHHcC-CCCcccc
Confidence 3568899999999999999999999999999999943 6899988764 2344566665553 233222 1112334
Q ss_pred EEEEee
Q psy8450 301 YLIFCR 306 (525)
Q Consensus 301 ~l~frr 306 (525)
++.+||
T Consensus 80 Rlilrk 85 (105)
T PF14847_consen 80 RLILRK 85 (105)
T ss_dssp -EEE--
T ss_pred ceEEEe
Confidence 677743
No 40
>PF10480 ICAP-1_inte_bdg: Beta-1 integrin binding protein; InterPro: IPR019517 ICAP-1 is a serine/threonine-rich protein that binds to the cytoplasmic domains of beta-1 integrins in a highly specific manner, binding to a NPXY sequence motif on the beta-1 integrin. The cytoplasmic domains of integrins are essential for cell adhesion, and the fact that phosphorylation of ICAP-1 by interaction with the cell-matrix implies an important role of ICAP-1 during integrin-dependent cell adhesion []. Over expression of ICAP-1 strongly reduces the integrin-mediated cell spreading on extracellular matrix and inhibits both Cdc42 and Rac1. In addition, ICAP-1 induces release of Cdc42 from cellular membranes and prevents the dissociation of GDP from this GTPase []. An additional function of ICAP-1 is to promote differentiation of osteoprogenitors by supporting their condensation through modulating the integrin high affinity state [].
Probab=95.47 E-value=0.12 Score=47.15 Aligned_cols=100 Identities=18% Similarity=0.252 Sum_probs=71.5
Q ss_pred HHHHHHHHhcC---CCCCceEEEEEeeCCeEEEEEccCceEEeecCccceEEEeecccceeccccccCC--CceEEEEEe
Q psy8450 414 KAQLLEILSKW---PLFGSSFFAIKRNGDQQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAES--GTLYLEMKC 488 (525)
Q Consensus 414 k~~fL~~~~~~---p~yGs~~F~v~~~~~~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~--~~~~~~i~~ 488 (525)
-+.+|+..++| |+-+.. .+++|+|.++||.+.+.++..++..+|+-+|.++-++...- +...|.++.
T Consensus 88 lI~~ID~aQq~GkLP~v~~~--------eevil~VSKyGiKvt~~d~~~VL~RhpL~~Ivr~V~YdDGlG~g~~llAlK~ 159 (200)
T PF10480_consen 88 LINYIDSAQQDGKLPFVPSD--------EEVILSVSKYGIKVTDNDQRDVLHRHPLHEIVRMVCYDDGLGAGKNLLALKV 159 (200)
T ss_pred HHHHHHHHhhcCcCCCCCCC--------CeEEEEEeeccEEEeecCCcceeeeeeeeeEEEEEEEecCcCCcceEEEEEc
Confidence 45666666544 543322 37889999999999999999999999999999876653221 346677777
Q ss_pred cccccc--eEEEEec---ccHHHHHHHHHHHHHHHhhh
Q psy8450 489 GNLFQQ--RVARIQT---DQAHEIARLIRQYMSLDRQK 521 (525)
Q Consensus 489 g~~~~~--~~~~~~t---~qa~ei~~LI~~Yi~~~~~~ 521 (525)
|+..+. ..+.+++ .||.+|+.+|..=.+..+.+
T Consensus 160 ~~~~~e~y~l~v~Qcss~~qA~~ICk~l~~aF~~v~t~ 197 (200)
T PF10480_consen 160 GDERQEEYQLWVYQCSSDEQAQEICKVLGQAFDSVLTS 197 (200)
T ss_pred cCCCcceEEEEEEEcCCHHHHHHHHHHHHHHHHHhhcc
Confidence 754321 2445554 38999999999887777654
No 41
>cd01202 FRS2 Fibroblast growth factor receptor substrate 2 (FRS2/SNT1) Phosphotyrosine-binding domain. Fibroblast growth factor receptor substrate 2 (FRS2/SNT1) Phosphotyrosine-binding domain (IRS1-like). FRS2 mediates signaling downstream of the FGF receptor. It has an N-terminal PTBi domain, which has a PH-like fold and is similiar to the PTB domain that is found in insulin receptor substrate molecules. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=95.29 E-value=0.18 Score=41.33 Aligned_cols=86 Identities=15% Similarity=0.137 Sum_probs=64.2
Q ss_pred ceEEEEEeeCC------eEEEEEccCceEEeecCccceEEEeecccceeccccccCCCceEEEEEecc--cccceEEEEe
Q psy8450 429 SSFFAIKRNGD------QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGN--LFQQRVARIQ 500 (525)
Q Consensus 429 s~~F~v~~~~~------~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~--~~~~~~~~~~ 500 (525)
.+.|.|....+ ..+|-|...-+.+.+++. + +..+||..|.+++.. . ..|.+.-|- ..-+..+.|.
T Consensus 5 ~~~F~V~~~~~~~~~~g~g~L~vt~~~L~l~~~~~-~-~~~WPl~~LRRYG~d---~--~~FsFEAGRRC~tGeG~f~F~ 77 (102)
T cd01202 5 SNSFRVINVDDDGNELGSGWLELTRTELTLYISGK-E-PVVWPLLCLRRYGYN---S--DLFSFESGRRCQTGEGIFAFR 77 (102)
T ss_pred CcEEEEEEECCCCCeeeeEEEEecceEEEEEcCCC-C-EEEccHHHhHhhccC---C--CEEEEEccCcCCCCCCEEEEE
Confidence 45677754432 789999999999998764 3 478999999987642 2 345555553 2235689999
Q ss_pred cccHHHHHHHHHHHHHHHhhh
Q psy8450 501 TDQAHEIARLIRQYMSLDRQK 521 (525)
Q Consensus 501 t~qa~ei~~LI~~Yi~~~~~~ 521 (525)
|++|++|...+.+||+....+
T Consensus 78 t~~~~~if~~v~~~I~~~~~~ 98 (102)
T cd01202 78 CKRAEELFNLLQSYIQENSIS 98 (102)
T ss_pred cCCHHHHHHHHHHHHHcCCcc
Confidence 999999999999999876544
No 42
>PF00640 PID: Phosphotyrosine interaction domain (PTB/PID) A page on PI domains.; InterPro: IPR006020 The PI domain has a similar structure to the insulin receptor substrate-1 PTB domain, a 7-stranded beta-sandwich, capped by a C-terminal helix. However, the PI domain contains an additional short N-terminal helix and a large insertion between strands 1 and 2, which forms a helix and 2 long connecting loops. The substrate peptide fits into a surface cleft formed from the C-terminal helix and strand 5 [].; GO: 0005515 protein binding; PDB: 1WGU_A 2YT0_A 2YT1_A 2YSZ_A 2ROZ_B 3SO6_A 2DYQ_A 1AQC_A 1X11_B 1WJ1_A ....
Probab=95.25 E-value=0.23 Score=43.62 Aligned_cols=80 Identities=19% Similarity=0.172 Sum_probs=56.3
Q ss_pred eEEEEEccCceEEeecCccceEEEeecccceeccc-cccCCCceEEEEEecccccc--eEEEEecccHHHHHHHHHHHHH
Q psy8450 440 QQILALNKHGVHFLNLLTHETISSVPYGDVISTRK-VRAESGTLYLEMKCGNLFQQ--RVARIQTDQAHEIARLIRQYMS 516 (525)
Q Consensus 440 ~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~-~~~~~~~~~~~i~~g~~~~~--~~~~~~t~qa~ei~~LI~~Yi~ 516 (525)
++.|.|+..||.++++++++++..+|..+|.-+.. ...+...+.+...-+....- ..|.+++ +|.+|+..|..=.+
T Consensus 53 ~V~l~vs~~gI~v~~~~t~~~l~~~~i~~Is~~~~~d~~~~~~Fafi~~~~~~~~~~CHVF~~~~-~A~~i~~~i~~aF~ 131 (140)
T PF00640_consen 53 KVTLNVSSDGIKVIDPDTGEVLMSHPIRRISFCAVGDPDDKRVFAFIARDPRSSRFYCHVFKCED-QAQEICQAIGQAFE 131 (140)
T ss_dssp EEEEEEETTEEEEEETTTTCEEEEEEGGGEEEEEESSTTETTEEEEEEEETSSSCEEEEEEEESS-CHHHHHHHHHHHHH
T ss_pred EEEEEEcCCeEEEecCccccccccCCccceEEEEecCCCcceEEEEEeccCCCCccccEeeeHhh-HHHHHHHHHHHHHH
Confidence 79999999999999999999999999999987765 32222212232222222222 3555566 89999999988776
Q ss_pred HHhh
Q psy8450 517 LDRQ 520 (525)
Q Consensus 517 ~~~~ 520 (525)
+..+
T Consensus 132 ~a~~ 135 (140)
T PF00640_consen 132 LAYQ 135 (140)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 43
>cd01267 CED6_AIDA1b Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=95.02 E-value=0.24 Score=43.42 Aligned_cols=79 Identities=15% Similarity=0.171 Sum_probs=54.6
Q ss_pred CeEEEEEccCceEEeecCccceEEEeecccceeccccccCCCceEEEEEeccc--ccceEEEEeccc---HHHHHHHHHH
Q psy8450 439 DQQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNL--FQQRVARIQTDQ---AHEIARLIRQ 513 (525)
Q Consensus 439 ~~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~--~~~~~~~~~t~q---a~ei~~LI~~ 513 (525)
.++.|-|+..||.++|+++++++..+|..+|+-+... +++. -.|-....+. .+-....|.+.. |.+|...|..
T Consensus 45 ~~V~L~IS~~gi~i~d~~t~~~l~~~~i~~ISfc~~d-~~~~-~~FafIa~~~~~~~~~ChvF~~~~~~~A~~I~~tig~ 122 (132)
T cd01267 45 PKVELDISIKGVKIIDPKTKTVLHGHPLYNISCCAQD-KEDL-RFFAFIAKDTETNKHYCHVFCSEKLGLAEEIILTIGQ 122 (132)
T ss_pred CeEEEEEEcCcEEEEeCCCCcEEEEcccceEEEEecC-CCCC-eEEEEEEecCCCCceEEEEEECCCHHHHHHHHHHHHH
Confidence 3799999999999999999999999999999765543 2222 2333322322 233566777654 7889888876
Q ss_pred HHHHHh
Q psy8450 514 YMSLDR 519 (525)
Q Consensus 514 Yi~~~~ 519 (525)
=.++..
T Consensus 123 AF~~ay 128 (132)
T cd01267 123 AFELAY 128 (132)
T ss_pred HHHHHH
Confidence 554443
No 44
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=94.90 E-value=0.088 Score=43.57 Aligned_cols=50 Identities=20% Similarity=0.290 Sum_probs=38.4
Q ss_pred EEEEeCCcchHHHHHHHHHHHhCCC----CCCCCcceEEEEEEcCCceeecCCCcchh
Q psy8450 233 TVINTKSTTVVEDICIEMCQLINVN----NDLEMEEFSLYCIVEGDAFTMPLAKEEYI 286 (525)
Q Consensus 233 ~~v~v~s~tt~~ev~~~i~~~lgL~----~~~~~~~FsL~~~~~~~~~~~~L~~~~~i 286 (525)
+.+-|.|.+|+.||++.+.++..+. ++ ..||||+...++. .+-|.++|+-
T Consensus 38 K~VrVsS~~tt~eVI~~LLeKFk~d~~~~s~---p~FALYevh~nGe-~RKL~d~E~P 91 (112)
T cd01782 38 KCIRVSSTATTRDVIDTLSEKFRPDMRMLSN---PTYSLYEVHENGE-ERRLLDDEKP 91 (112)
T ss_pred EEEEEecCCCHHHHHHHHHHHhcccccccCC---cceEEEEEecCCc-eEEcCCcCCC
Confidence 4577899999999999999998733 43 5899999986432 5667776663
No 45
>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a role in regulation of intermediary metabolism and gene regulation. The suggested role of ACBP is to act as a intracellular acyl-CoA transporter and pool former. ACBPs are present in a large group of eukaryotic species and several tissue-specific isoforms have been detected.
Probab=94.79 E-value=0.19 Score=40.54 Aligned_cols=63 Identities=11% Similarity=0.127 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHh--cCCCCCCChhhhhhccCcccccccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-C
Q psy8450 349 IVYDVAKLAALLHRA--ADMSHPPAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKW-P 425 (525)
Q Consensus 349 ~~~~~~~LaAl~~~~--~d~~~~~~~~~l~~~lP~~~~~~~~~~~~~w~~~I~~~~~~l~g~s~~~Ak~~fL~~~~~~-p 425 (525)
+.++-.+|-||.-|+ ||++.. -|. ... ...+.-..+|++++|+|+++|+..|++++.+. |
T Consensus 20 ~~~~~L~lYalyKQAt~G~~~~~---------~P~-~~d-------~~~~~K~~AW~~l~~ms~~eA~~~YV~~~~~l~~ 82 (85)
T cd00435 20 SNEEKLQLYSLYKQATVGDCNTE---------RPG-MFD-------LKGRAKWDAWNSLKGMSKEDAMKAYIAKVEELIA 82 (85)
T ss_pred CHHHHHHHHHHHHHhccCCCCCC---------CCC-ccc-------HhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 568899999998876 455421 011 111 11233456899999999999999999999665 7
Q ss_pred CCC
Q psy8450 426 LFG 428 (525)
Q Consensus 426 ~yG 428 (525)
-||
T Consensus 83 ~~~ 85 (85)
T cd00435 83 KYA 85 (85)
T ss_pred ccC
Confidence 665
No 46
>smart00455 RBD Raf-like Ras-binding domain.
Probab=94.69 E-value=0.083 Score=40.87 Aligned_cols=43 Identities=19% Similarity=0.174 Sum_probs=38.6
Q ss_pred EecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEE
Q psy8450 225 YRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIV 271 (525)
Q Consensus 225 v~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~ 271 (525)
+++|||+...|.+.+..|++|+++.+|++-|+.. +...+|...
T Consensus 4 v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~----~~~~v~~~g 46 (70)
T smart00455 4 VHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNP----ECCVVRLRG 46 (70)
T ss_pred EECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCH----HHEEEEEcC
Confidence 5799999999999999999999999999999964 578888853
No 47
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=94.44 E-value=0.12 Score=39.86 Aligned_cols=45 Identities=24% Similarity=0.445 Sum_probs=39.9
Q ss_pred eeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEE
Q psy8450 222 RQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIV 271 (525)
Q Consensus 222 ~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~ 271 (525)
++ ++||||+.-.|.+.+..|++|++..+|++-||.. ....+|...
T Consensus 2 cr-V~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~----~~~~vf~~g 46 (73)
T cd01817 2 CR-VILPDGSTTVVPTRPGESIRDLLSGLCEKRGINY----AAVDLFLVG 46 (73)
T ss_pred cE-EECCCCCeEEEEecCCCCHHHHHHHHHHHcCCCh----hHEEEEEec
Confidence 45 4699999999999999999999999999999996 478888874
No 48
>cd00934 PTB Phosphotyrosine-binding (PTB) domain. Phosphotyrosine-binding (PTB) domain; PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domain of SHC binds to a NPXpY sequence. More recent studies have found that some types of PTB domains such as the neuronal protein X11 and in the cell-fate determinant protein Numb can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.
Probab=94.23 E-value=0.36 Score=41.30 Aligned_cols=75 Identities=17% Similarity=0.176 Sum_probs=51.8
Q ss_pred CeEEEEEccCceEEeecCccceEEEeecccceeccccccCCCceEEEEEeccc--ccc--eEEEEecccHHHHHHHHHHH
Q psy8450 439 DQQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNL--FQQ--RVARIQTDQAHEIARLIRQY 514 (525)
Q Consensus 439 ~~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~--~~~--~~~~~~t~qa~ei~~LI~~Y 514 (525)
.++.|-|+..||.++|+++++.+..+|+..|.-+...+ ++. -.|-+...+. ..- ..|.+++. |.+|+..|+.=
T Consensus 42 ~~v~l~vs~~gv~l~d~~~~~~l~~~~l~~Is~~~~~~-~~~-~~F~~i~~~~~~~~~~CHvF~c~~~-a~~i~~~l~~a 118 (123)
T cd00934 42 QKVILSVSSDGVKLIDPKTKEVLASHPIRRISFCAADP-DDL-RIFAFIAREPGSSRFECHVFKCEKV-AEPIALTLGQA 118 (123)
T ss_pred CEEEEEEEcCcEEEEeCCCCcEEEeeccceEEEEECCC-CCC-cEEEEEEEcCCCCcEEEEEEEeCch-HHHHHHHHHHH
Confidence 38999999999999999999999999999998765543 222 2233322221 122 34555566 78888888764
Q ss_pred HH
Q psy8450 515 MS 516 (525)
Q Consensus 515 i~ 516 (525)
.+
T Consensus 119 f~ 120 (123)
T cd00934 119 FQ 120 (123)
T ss_pred HH
Confidence 43
No 49
>KOG4239|consensus
Probab=94.00 E-value=0.098 Score=51.28 Aligned_cols=69 Identities=22% Similarity=0.266 Sum_probs=51.1
Q ss_pred CCCCCCCHHHHHHHHcCCCcee------eEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEc
Q psy8450 201 GRKNVPSVEEVTAVSAGRNSKR------QLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVE 272 (525)
Q Consensus 201 ~R~~~Ps~~Ei~a~~~~~~~~~------~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~ 272 (525)
.+..||+.....- .++.++.- .-|++|-.+...|.|+|.||+.||+..+.++..+.+.. +.||||+...
T Consensus 179 ~g~~p~~~~d~~~-~~r~singhfynh~TSfflPa~svk~vrInStttt~eVI~~LLkKF~Ved~P--~kFALy~~~~ 253 (348)
T KOG4239|consen 179 RGKKPPSVYDARI-RHRFSINGHFYNHRTSFFLPADSVKNVRINSTTTTREVIKLLLKKFRVEDNP--QKFALYERHE 253 (348)
T ss_pred CCCCCCcHHHHHH-hhcccccceeeccceeeecccccceeEEecccccHHHHHHHHHHHHeecCCH--hheeeeEEee
Confidence 4455676655442 22222211 23568888999999999999999999999999998874 8999999873
No 50
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=93.93 E-value=0.5 Score=38.56 Aligned_cols=67 Identities=13% Similarity=0.181 Sum_probs=54.0
Q ss_pred ceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhhhhHH
Q psy8450 220 SKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTE 292 (525)
Q Consensus 220 ~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl~~ 292 (525)
-.++||. .|++..++.+...|||.|++..+.++..+.+. ..|-|++...| .++.|.+.|.-+.+...
T Consensus 3 y~IRIFr-~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~---~ny~l~l~~~~--l~RvL~p~ErPl~Iqkr 69 (97)
T cd01775 3 YCIRVFR-SDGTFTTLSCPLNTTVSELIPQLAKKFYLPSG---GNYQLSLKKHD--LSRVLRPTEKPLLIQKR 69 (97)
T ss_pred eEEEEEe-cCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCC---CCeEEEEEECC--eeeecCCcCCcHHHHHH
Confidence 3456654 58998999999999999999999999999997 58999998643 57888888876655443
No 51
>cd01273 CED-6 CED-6 Phosphotyrosine-binding (PTB) domain. CED-6 Phosphotyrosine-binding (PTB) domain. CED6 is an adaptor protein involved in the engulfment of apoptotic cells. It has a C-terminal PTB domain, which can bind to NPXY motifs. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=93.76 E-value=0.59 Score=41.57 Aligned_cols=78 Identities=13% Similarity=0.153 Sum_probs=54.4
Q ss_pred CeEEEEEccCceEEeecCccceEEEeecccceeccccccCCCceEEEEEeccc---ccceEEEEeccc-HHHHHHHHHHH
Q psy8450 439 DQQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNL---FQQRVARIQTDQ-AHEIARLIRQY 514 (525)
Q Consensus 439 ~~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~---~~~~~~~~~t~q-a~ei~~LI~~Y 514 (525)
.++.|-|+.+||.++|++|++++..++..+|+-.... +++. -+|-....+. .+-..+.|.+.+ |.+|+.-|..=
T Consensus 55 ~~V~L~IS~~GI~v~d~~t~~~~~~~~i~~ISfca~d-~~~~-r~FayIak~~~~~~~~~ChvF~s~~~A~~I~~tigqA 132 (142)
T cd01273 55 QKVEIRISIDGVIIAEPKTKAPMHTFPLGRISFCADD-KDDK-RMFSFIAKAEGASGKHSCFVFTSEKLAEDITLTIGQA 132 (142)
T ss_pred cEEEEEEECCeEEEEEcCCCcEEEEcCcceEEEEecC-CCCC-eEEEEEecCCCCCCcEEEEEEeccchHHHHHHHHHHH
Confidence 3899999999999999999999999999999754432 2222 2333323322 244578888865 88888877654
Q ss_pred HHHH
Q psy8450 515 MSLD 518 (525)
Q Consensus 515 i~~~ 518 (525)
-++.
T Consensus 133 F~~a 136 (142)
T cd01273 133 FDLA 136 (142)
T ss_pred HHHH
Confidence 4443
No 52
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=93.63 E-value=0.21 Score=38.73 Aligned_cols=43 Identities=19% Similarity=0.356 Sum_probs=36.1
Q ss_pred EecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEE
Q psy8450 225 YRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIV 271 (525)
Q Consensus 225 v~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~ 271 (525)
++||||+.-.+.+.+..|++|++..+|++-||... .+.+|...
T Consensus 5 v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~----~~~V~~~~ 47 (71)
T PF02196_consen 5 VHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPE----CCDVRLVG 47 (71)
T ss_dssp EEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CC----CEEEEEEE
T ss_pred EECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHH----HEEEEEcC
Confidence 68999999999999999999999999999999874 68888764
No 53
>KOG4335|consensus
Probab=93.40 E-value=0.011 Score=61.51 Aligned_cols=170 Identities=17% Similarity=0.176 Sum_probs=109.1
Q ss_pred hhhHHHhh---cCCcEEEEEeeeccccCC---cccchhhHHhhhhhhchhhhhccccccCCCCCCcchHHHHHHHHHHHH
Q psy8450 288 DVTTELHK---NQQVFYLIFCRSVWYFPL---RLDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLH 361 (525)
Q Consensus 288 Dvl~~~e~---~~~~~~l~frr~~~~~p~---~~d~~~~~~l~y~Q~~~d~l~G~~~~~~~~~~p~~~~~~~~~LaAl~~ 361 (525)
.++++|.. .+.+..+.++|..++.-. ..+++.+..++|.-++++.++|.|.-. ....+.+|.+..
T Consensus 311 ~LL~e~~N~sp~~d~p~~~l~r~v~l~~~~ek~iedp~~~~ilf~eaR~n~L~Gfy~~~---------~~k~v~va~i~l 381 (558)
T KOG4335|consen 311 ELLNEYRNVSPVSDDPGCELARGVHLRAYLEKCIEDPFYGCILFHEARDNPLQGFYHRG---------GRKSVSVASISL 381 (558)
T ss_pred HHHHHHhcCCccCCccchhhhhcccchhhhHhhhhchhhhhhhhhhhhhhhhccccccC---------Cceeeehhhhhc
Confidence 35666643 245677888887765421 235688999999999999999999751 122344553433
Q ss_pred Hh---cCCCCCC-----ChhhhhhccCcccccccCCCHHHHHHH-HHHHHHhc---CCCCHHHH--HHHHHHHHhcCCCC
Q psy8450 362 RA---ADMSHPP-----AMKETKFLLPKPALTQRDIKPAQWVQM-VQSHWTQT---APLHSIQA--KAQLLEILSKWPLF 427 (525)
Q Consensus 362 ~~---~d~~~~~-----~~~~l~~~lP~~~~~~~~~~~~~w~~~-I~~~~~~l---~g~s~~~A--k~~fL~~~~~~p~y 427 (525)
+. .+-++.- ..++++...|..-. ...+--|.+. +...|+.. .|++.+.| ...+++.|...|.+
T Consensus 382 ~~vhv~~Ss~Kh~~~vl~lEelk~~~~t~~~---~~~~~~wlef~~~~e~kn~n~~~gVs~ema~l~~~~~e~c~ei~~~ 458 (558)
T KOG4335|consen 382 EGVHVVDSSEKHVLLVLNLEELKSWDHTSPE---EEEPILWLEFDIDSEYKNVNKLLGVSSEMAELMSSLIEYCIEIPSQ 458 (558)
T ss_pred ccceeeccccccchhcccHHHhcccCCCCCh---hhcchhhhhhhhhccccCccceechhHHHHHHHHHHHHHheeehhc
Confidence 32 2222211 12444444443211 2223456666 66666554 37888776 45689999999999
Q ss_pred CceEEEEEeeC-----C----eEEEEEccCceEEeecCccceEEEeecccce
Q psy8450 428 GSSFFAIKRNG-----D----QQILALNKHGVHFLNLLTHETISSVPYGDVI 470 (525)
Q Consensus 428 Gs~~F~v~~~~-----~----~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~ 470 (525)
|.++|.-.... + +..++|| +|++++...++-+..++.+..+.
T Consensus 459 ga~~~~pqd~ak~SpSD~~~~~~~vqv~-k~l~~ls~q~~~~~ssikh~~~i 509 (558)
T KOG4335|consen 459 GAEPAGPQDSAKGSPSDHSSSPAPVQVN-KGLPKLSRQGSVVSSSIKHLSTI 509 (558)
T ss_pred cccccCcccccCCCCCcccccccccccc-ccchhhccchhHHHHHhhhhhhe
Confidence 99999876432 2 7899999 99999998887766666665544
No 54
>cd01215 Dab Disabled (Dab) Phosphotyrosine-binding domain. Disabled (Dab) Phosphotyrosine-binding domain. Dab is a cystosolic adaptor protein, which binds to the cytoplasmic tails of lipoprotein receptors, such as ApoER2 and VLDLR, via its PTB domain. The dab PTB domain has a preference for unphosphorylated tyrosine within an NPxY motif. Additionally, the Dab PTB domain, which is structurally similar to PH domains, binds to phosphatidlyinositol phosphate 4,5 bisphosphate in a manner characteristic of phosphoinositide binding PH domains.
Probab=93.05 E-value=0.78 Score=40.36 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=54.4
Q ss_pred eEEEEEccCceEEeecCccceEEEeecccceeccccccCCCceEEEEEecc-cccceEEEEec-ccHHHHHHHHHHHHHH
Q psy8450 440 QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGN-LFQQRVARIQT-DQAHEIARLIRQYMSL 517 (525)
Q Consensus 440 ~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~-~~~~~~~~~~t-~qa~ei~~LI~~Yi~~ 517 (525)
+++|.|+..||.++|++|+..+..+|...|+-....+.+.. .|....++ .....-+.+.| ..|++|..-|.+=-++
T Consensus 54 kV~L~IS~dGi~v~D~~T~~ll~~~~i~rISfca~D~~d~r--~FsyI~~~~~~~H~f~~~k~~k~A~~i~lti~~aF~v 131 (139)
T cd01215 54 RITLQINIDGIKVLDEKTGAVLHHHPVHRISFIARDSTDAR--AFGYVYGEPGGKHRFYGIKTAQAADQVVLAIRDLFQV 131 (139)
T ss_pred eEEEEEccCCEEEEcCCCCcEEEeeceeeEEEEecCCCCCe--EEEEEEEcCCCcEEEEEEEhHHcchhhhhhHHHHHHH
Confidence 89999999999999999999999999999965433322222 23332333 22334556777 5688888777766555
Q ss_pred Hhh
Q psy8450 518 DRQ 520 (525)
Q Consensus 518 ~~~ 520 (525)
..+
T Consensus 132 a~e 134 (139)
T cd01215 132 VFE 134 (139)
T ss_pred HHH
Confidence 543
No 55
>cd01269 PLX Pollux (PLX) Phosphotyrosine-binding (PTB) domain. Pollux (PLX) Phosphotyrosine-binding (PTB) domain. PLX is calmodulin-binding protein containing a TBC domain, which is conserved from yeast to man, but it only has an N-terminal PTB domain in mammals. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=92.94 E-value=0.48 Score=40.41 Aligned_cols=71 Identities=8% Similarity=0.122 Sum_probs=47.5
Q ss_pred eEEEEEccCceEEeecCccceEEEeecccceeccccccCCCceEEEEEeccccc-----ceEEEEe--cc-cHHHHHHHH
Q psy8450 440 QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNLFQ-----QRVARIQ--TD-QAHEIARLI 511 (525)
Q Consensus 440 ~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~~~-----~~~~~~~--t~-qa~ei~~LI 511 (525)
...+.|+..||.+++|+||.++...+|.+|.+...- ....-.|-+.-++... -..+.|+ +. -+.||..-|
T Consensus 44 tm~~~I~~~~v~lispdtK~vl~~k~f~dISsC~qg--~~~~dhFgFIcrEs~~~~~~~f~CyVFqc~Se~la~eI~lti 121 (129)
T cd01269 44 TMLFQVGRFEINLISPDTKSVVLEKNFKDISSCSQG--IKHVDHFGFICRESPEPGLSQYICYVFQCADESLVDEVMLTL 121 (129)
T ss_pred EEEEEEeccceEEEcCCcceEEEecCccccchhhcC--CCCcceEEEEeccCCCCCcceEEEEEEEcCCHHHHHHHHHHH
Confidence 689999999999999999999999999999886432 2222334444443221 1356666 43 356665544
Q ss_pred H
Q psy8450 512 R 512 (525)
Q Consensus 512 ~ 512 (525)
.
T Consensus 122 ~ 122 (129)
T cd01269 122 K 122 (129)
T ss_pred H
Confidence 3
No 56
>cd01779 Myosin_IXb_RA ubitquitin-like domain of Myosin_IXb_RA. Myosin_IXb_RA RasGTP binding domain from guanine nucleotide exchange factors. In some proteins the domain acts as a RasGTP effector (AF6, canoe and RalGDS, for example), but in other cases it may not bind to RasGTP at all.
Probab=92.92 E-value=0.44 Score=38.43 Aligned_cols=52 Identities=8% Similarity=0.111 Sum_probs=41.2
Q ss_pred EEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchh
Q psy8450 232 ETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYI 286 (525)
Q Consensus 232 ~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i 286 (525)
+..+.+.+.+|++||++.+...|||... ..|-|.++.+-+..+..|++++..
T Consensus 26 ~C~v~a~k~sTAa~VI~~~i~~L~Ld~t---k~YvLaEVkEsGgEEwvL~p~D~p 77 (105)
T cd01779 26 SCRVTATKDSTAADVIDDVIASLQLDGT---KCYVLAEVKESGGEEWVLDPTDSP 77 (105)
T ss_pred EeEeEeccCCcHHHHHHHHHHHhCcCcc---ccEEEEEeeccCCeeeecCcccCc
Confidence 4457888999999999999999999987 789999987533345567776653
No 57
>smart00462 PTB Phosphotyrosine-binding domain, phosphotyrosine-interaction (PI) domain. PTB/PI domain structure similar to those of pleckstrin homology (PH) and IRS-1-like PTB domains.
Probab=92.88 E-value=0.82 Score=39.84 Aligned_cols=82 Identities=15% Similarity=0.114 Sum_probs=54.0
Q ss_pred eEEEEEccCceEEeecCccceEEEeecccceeccccccCCCceEEEEEecccccceEEEEec-ccHHHHHHHHHHHHHHH
Q psy8450 440 QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNLFQQRVARIQT-DQAHEIARLIRQYMSLD 518 (525)
Q Consensus 440 ~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~~~~~~~~~~t-~qa~ei~~LI~~Yi~~~ 518 (525)
++.|.|+..||.+.+..+++++..+|+..|.-....+.+..-+.+..+.++...-....|.. +.+.+|+..|....+..
T Consensus 45 ~v~l~vs~~gv~v~~~~~~~~l~~~~l~~Isf~~~~~~~~~~F~fI~~~~~~~~~~CHvF~c~~~a~~i~~~i~~aF~~a 124 (134)
T smart00462 45 KVILSISSRGVKLIDEDTKAVLHEHPLRRISFCAVGPDDLDVFGYIARDPGSSRFACHVFRCEKAAEDIALAIGQAFQLA 124 (134)
T ss_pred EEEEEEECCcEEEEECCCCeEEEEccccceEEEecCCCCCcEEEEEeeCCCCCeEEEEEEEcCchHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999976544322222122222222211123444443 23788999888887776
Q ss_pred hhh
Q psy8450 519 RQK 521 (525)
Q Consensus 519 ~~~ 521 (525)
.+.
T Consensus 125 ~~~ 127 (134)
T smart00462 125 YEL 127 (134)
T ss_pred HHH
Confidence 553
No 58
>cd01785 PDZ_GEF_RA Ubiquitin-like domain of PDZ_GEF_RA. PDZ_GEF_RA PDZ-GEF is a guanine nucleotide exchange factor (GEF) characterised by the presence of a PSD-95/DlgA/ZO-1 (PDZ) domain, a Ras-association (RA) domain and a region related to a cyclic nucleotide binding domain (RCBD). RA-GEF exchanges nucleotides of both Rap1 and Rap2, but is also thought to mediate cAMP-induced Ras activation. The RA domain interacts with Rap1 and also contributes to the membrane localization of RA-GEF. This domain may function in a positive feedback loop.
Probab=92.04 E-value=0.77 Score=35.73 Aligned_cols=46 Identities=13% Similarity=0.176 Sum_probs=40.5
Q ss_pred eEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEE
Q psy8450 223 QLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIV 271 (525)
Q Consensus 223 ~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~ 271 (525)
.|+ =.|.+++-+.|...|||+|++....++.||.... ..|+|++++
T Consensus 6 kvy-kaDQt~kyili~K~Tta~evv~lal~eFgi~~~s--~~~sLceVt 51 (85)
T cd01785 6 KVY-KADQTCKYLLIYKETTAHEVVMLALQEFGITAPS--SNFSLCEVS 51 (85)
T ss_pred EEE-ecCcceeEEEEeccccHHHHHHHHHHHhCCCCCc--cceEEEEEE
Confidence 444 4588888899999999999999999999999985 899999987
No 59
>cd01208 X11 X11 Phosphotyrosine-binding (PTB) domain. X11 Phosphotyrosine-binding (PTB) domain. The neuronal protein X11 has a PTB domain followed by two PDZ domains. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether. X11 binds to the cytoplasmic domain of the beta-amyloid precursor protein (beta-APP) and does not require the substrate to be tyrosine-phosphorylated for binding.
Probab=91.42 E-value=1.7 Score=38.95 Aligned_cols=74 Identities=19% Similarity=0.140 Sum_probs=53.0
Q ss_pred eEEEEEccCceEEeecCccceEEEeecccceeccccccCCCceEEEEE---ec--------------c----cccceEEE
Q psy8450 440 QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMK---CG--------------N----LFQQRVAR 498 (525)
Q Consensus 440 ~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~---~g--------------~----~~~~~~~~ 498 (525)
++-|-|+-+||.+++++|++++..+++..|+-. .+.+..++-|- .+ + ..+...+.
T Consensus 51 ~V~L~IS~~gV~v~~~~tk~im~~h~L~~ISy~----AD~~d~~v~mAkr~~~~~~~~~~~~~~~~~~~~~~~~k~~ChV 126 (156)
T cd01208 51 EVDLFISTEKIMVLNTDLQEIXMDHALRTISYI----ADIGDLVVLMARRRIPRSSSQENSEASHPSQDGKRTPKXICHV 126 (156)
T ss_pred EEEEEEEeCeEEEEecCccceeccCcccceEEE----ecCCCeEEEEEeccccccccccccccCCcccccccccceeEEE
Confidence 899999999999999999999999999998543 23333322221 00 0 01135789
Q ss_pred EecccHHHHHHHHHHHHHH
Q psy8450 499 IQTDQAHEIARLIRQYMSL 517 (525)
Q Consensus 499 ~~t~qa~ei~~LI~~Yi~~ 517 (525)
|++..|.+|+..|.+=-++
T Consensus 127 Fes~~Aq~Ia~TIGQAF~l 145 (156)
T cd01208 127 FESDEAQFIAQSIGQAFQV 145 (156)
T ss_pred EecCcHHHHHHHHHHHHHH
Confidence 9999999999988764433
No 60
>cd01268 Numb Numb Phosphotyrosine-binding (PTB) domain. Numb Phosphotyrosine-binding (PTB) domain. Numb is a membrane associated adaptor protein, which is a determinant of asymmetric cell division. Numb has an N-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=90.87 E-value=1.7 Score=38.39 Aligned_cols=76 Identities=9% Similarity=0.020 Sum_probs=50.1
Q ss_pred CCeEEEEEccCceEEeecCccceEEEeecccceeccccccCCCceEEEEEeccccc--ceEEEEecc--cHHHHHHHHHH
Q psy8450 438 GDQQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNLFQ--QRVARIQTD--QAHEIARLIRQ 513 (525)
Q Consensus 438 ~~~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~~~--~~~~~~~t~--qa~ei~~LI~~ 513 (525)
...++|-|+.+||.++|++|++++..+|...|+-+...+ ++. -+|.....+... -....|-+. -|+.|+.-|..
T Consensus 49 ~~kv~L~VS~~Gi~vvd~~Tk~~i~~~~i~~ISfca~D~-~d~-r~FayIakd~~~~r~~CHvF~~~k~sa~~i~~avG~ 126 (138)
T cd01268 49 PVKAVLWVSGDGLRVVDEKTKGLIVDQTIEKVSFCAPDR-NFD-RGFSYICRDGTTRRWMCHGFLAVKDTGERLSHAVGC 126 (138)
T ss_pred CCEEEEEEecCcEEEEecCCCcEEEEEeEEEEEEEecCC-CCC-cEEEEEecCCCcccEEEEEEEeeccchhHHHHHHHH
Confidence 347999999999999999999999999999997655432 222 233332232222 134445442 38888887764
Q ss_pred HH
Q psy8450 514 YM 515 (525)
Q Consensus 514 Yi 515 (525)
=.
T Consensus 127 AF 128 (138)
T cd01268 127 AF 128 (138)
T ss_pred HH
Confidence 33
No 61
>KOG4229|consensus
Probab=90.27 E-value=0.35 Score=56.15 Aligned_cols=256 Identities=11% Similarity=0.069 Sum_probs=151.3
Q ss_pred HHHHHHhhhhcCCCCCCCCHHHHHHHHcCCCceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEE
Q psy8450 189 CLQNLRKTLRYGGRKNVPSVEEVTAVSAGRNSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLY 268 (525)
Q Consensus 189 c~~~L~r~~~~g~R~~~Ps~~Ei~a~~~~~~~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~ 268 (525)
|..++.++...|++..+|++.+.+|.....+.... +.+.++...+...++++++.|.+....+.++..+. +++|
T Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~ra~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~-----~~~~ 653 (1062)
T KOG4229|consen 580 SDESLLRQLVNGDPTAVSRWFELRALKVAMPVPLE-VTLRRPVRKTLTADSSRSAPETTNCLPDKVLPEDR-----PSLF 653 (1062)
T ss_pred ccchhhcccCCCCCccCCcchhhhhhcccccccch-hhhccccccccccccccchHHHHHhhhccccccCC-----hhhh
Confidence 56677788888999999999999999854544444 56778888888889999999999998888888775 4776
Q ss_pred EEEcCCceeecCCCcchhhhhhHHHhh-----c----CCcEEEEEeeeccccCCcccchhhHHhhhhhhchhhhhccccc
Q psy8450 269 CIVEGDAFTMPLAKEEYILDVTTELHK-----N----QQVFYLIFCRSVWYFPLRLDCQLYVQVLFNQIAPDYLEGLLLV 339 (525)
Q Consensus 269 ~~~~~~~~~~~L~~~~~i~Dvl~~~e~-----~----~~~~~l~frr~~~~~p~~~d~~~~~~l~y~Q~~~d~l~G~~~~ 339 (525)
...+ ....+.+.+++.+++.+. . ..+++++++..........+ ....+++|.+++.-+-.|
T Consensus 654 ~~~s-----~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---- 723 (1062)
T KOG4229|consen 654 EELS-----ALARGQDHFMRAISQNPRYALEQGSQERKGPRRLSSRGSTATPSHDRP-GRKTNLLYSEVVNGRKNS---- 723 (1062)
T ss_pred cchh-----hcCCCccchhhhhhcCchhhhhhcCcccCchhhhhhcccccCCCCCCc-cccccccchhhhcccccc----
Confidence 5431 222344666666643221 1 34677766654433222112 245667788855544444
Q ss_pred cCCCCCCcchHHHHHHHHHHHHHhcC-CCCCC--ChhhhhhccCcccccccCCCHHHHHHHHHHHHHhcC-CCCHHHHHH
Q psy8450 340 LPNEQIPQDIVYDVAKLAALLHRAAD-MSHPP--AMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTA-PLHSIQAKA 415 (525)
Q Consensus 340 ~~~~~~p~~~~~~~~~LaAl~~~~~d-~~~~~--~~~~l~~~lP~~~~~~~~~~~~~w~~~I~~~~~~l~-g~s~~~Ak~ 415 (525)
.|+|+...++.+.++-++.... .+... ....+..++|..-.. ....+.|-+.+...+.+-. ...+...+.
T Consensus 724 ----~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~e~~t~~~l~~~~kk~~~~~~~~~~~ 797 (1062)
T KOG4229|consen 724 ----EYLCSPRPDLAERARVQLLEKNAINMKSERLTTLLPRYIPDPCLD--PVRRERVTQLRLHQHKKKAFPQPLRSPQV 797 (1062)
T ss_pred ----cccCCCCHHHHHHHHHHHHhhccccchhhhhcccccccCccccCC--ccccchhhhHHHHHhhccccCccccccch
Confidence 4455555677777766654311 11111 112344445544332 2245788888888877643 111112222
Q ss_pred HHHHH----HhcCCCCCceEEEEEeeCC------eEEEEEccCceEEeecCccceEEEeecccce
Q psy8450 416 QLLEI----LSKWPLFGSSFFAIKRNGD------QQILALNKHGVHFLNLLTHETISSVPYGDVI 470 (525)
Q Consensus 416 ~fL~~----~~~~p~yGs~~F~v~~~~~------~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~ 470 (525)
.|.+. ..+||+|++.++.-.+..+ .+...++..| ..++..+..+..+.+|.
T Consensus 798 ~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~----~~~~~~v~~~~~~~~i~ 858 (1062)
T KOG4229|consen 798 RKSKLESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTG----ELDQEQVRRSLYFAEIS 858 (1062)
T ss_pred hhccchhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchh----hhccchheecccccccc
Confidence 33222 3588999999888643322 4667777777 22233444445555543
No 62
>PF08416 PTB: Phosphotyrosine-binding domain; InterPro: IPR013625 The phosphotyrosine-binding domain (PTB, also phosphotyrosine-interaction or PI domain) of tensin tends to be found at the C terminus of a protein. Tensin is a multi-domain protein that binds to actin filaments and functions as a focal-adhesion molecule (focal adhesions are regions of plasma membrane through which cells attach to the extracellular matrix). Human tensin has actin-binding sites, an SH2 (IPR000980 from INTERPRO) domain and a region similar to the tumour suppressor PTEN []. The PTB domain interacts with the cytoplasmic tails of beta integrin by binding to an NPXY motif []. ; GO: 0005515 protein binding; PDB: 3HQC_A 2DKQ_A 2LOZ_A 2CY5_A 2CY4_A 2GJY_A 1WVH_A.
Probab=90.16 E-value=1.9 Score=37.83 Aligned_cols=80 Identities=16% Similarity=0.112 Sum_probs=56.0
Q ss_pred eEEEEEccCceEEeecCccceEEEeecccceeccccccCCC-ceEEEEEec--ccccceEEEEe--cccHHHHHHHHHHH
Q psy8450 440 QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESG-TLYLEMKCG--NLFQQRVARIQ--TDQAHEIARLIRQY 514 (525)
Q Consensus 440 ~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~-~~~~~i~~g--~~~~~~~~~~~--t~qa~ei~~LI~~Y 514 (525)
.+.+-|+..||.+.|..+++.+..||++.|...+..+.+.. +..|-+... +...+....|. --.|+.++.-|.++
T Consensus 41 ~~~lkV~~~~v~L~D~~~k~~le~yPl~~I~~c~~~~~~~~~~~il~fV~r~~~~~~~~~H~Fqc~ev~a~~~~~~I~~~ 120 (131)
T PF08416_consen 41 EMHLKVSDQGVTLTDIETKEFLEHYPLSSIQFCGADPDSRRYNSILGFVVRKPGSSKPNVHLFQCEEVDAEQPAEDIVSA 120 (131)
T ss_dssp EEEEEEETTEEEEEESSTSSECEEEECCCEEEEEEETTTTEECBEEEEEEEETTCCCEEEEEEEETCTCTTSHHHHHHHH
T ss_pred EEEEEEeCCeEEEEECcccchhhhCCHhHeeeccccCCCCccceEEEEEEecCCCCCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 68899999999999999999999999999998776643321 122333222 22233445555 66788888888888
Q ss_pred HHHHh
Q psy8450 515 MSLDR 519 (525)
Q Consensus 515 i~~~~ 519 (525)
++-..
T Consensus 121 v~~~~ 125 (131)
T PF08416_consen 121 VSKVK 125 (131)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 76543
No 63
>KOG1574|consensus
Probab=90.09 E-value=0.79 Score=46.38 Aligned_cols=64 Identities=19% Similarity=0.253 Sum_probs=50.3
Q ss_pred EecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhhhhHHHhh
Q psy8450 225 YRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHK 295 (525)
Q Consensus 225 v~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl~~~e~ 295 (525)
|...|....+..|+..||+.||+..+++.+|=+-. |.|.+.-- ..+|.|.+.+.+++++..|-.
T Consensus 10 VWVdgeer~VcGvt~~TTCqdVV~ALa~aigq~Gr-----f~iVEKwR--~~ER~L~p~erpl~ll~~wge 73 (375)
T KOG1574|consen 10 VWVDGEERIVCGVTERTTCQDVVIALAQAIGQKGR-----FTIVEKWR--GYERHLAPSERPLKLLAKWGE 73 (375)
T ss_pred EEeccceeeeecccCCccHHHHHHHHHHHhCCCCc-----eEEeehhc--ccccccCCccCHHHHHHhhhh
Confidence 44544455556799999999999999998887743 88887643 357889999999999999953
No 64
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=89.83 E-value=1.2 Score=35.88 Aligned_cols=58 Identities=19% Similarity=0.227 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHh--cCCCCCCChhhhhhccCcccccccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q psy8450 349 IVYDVAKLAALLHRA--ADMSHPPAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSK 423 (525)
Q Consensus 349 ~~~~~~~LaAl~~~~--~d~~~~~~~~~l~~~lP~~~~~~~~~~~~~w~~~I~~~~~~l~g~s~~~Ak~~fL~~~~~ 423 (525)
+.++-.+|-||.-|+ ||++.. -|. .. . -....=.++|++++|+|+++|+..|++++.+
T Consensus 22 ~~~~~L~LYalyKQAt~Gd~~~~---------~P~-~~-----d--~~~~~K~~AW~~l~gms~~eA~~~Yi~~v~~ 81 (87)
T PF00887_consen 22 SNDDKLELYALYKQATHGDCDTP---------RPG-FF-----D--IEGRAKWDAWKALKGMSKEEAMREYIELVEE 81 (87)
T ss_dssp -HHHHHHHHHHHHHHHTSS--S----------CTT-TT-----C--HHHHHHHHHHHTTTTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCcCC---------CCc-ch-----h--HHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 668999999998876 555421 111 10 0 1122334689999999999999999999854
No 65
>cd01274 AIDA-1b AIDA-1b Phosphotyrosine-binding (PTB) domain. AIDA-1b Phosphotyrosine-binding (PTB) domain. AIDA-1b is an amyloid-beta precursor protein interacting protein. It consists of ankyrin repeats, a SAM domain and a C-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=89.40 E-value=2.4 Score=36.92 Aligned_cols=76 Identities=16% Similarity=0.125 Sum_probs=49.7
Q ss_pred CeEEEEEccCceEEeecCccceEEEeecccceeccccccCCCceEEEEEecccc-cceEEEEec--c-cHHHHHHHHHHH
Q psy8450 439 DQQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNLF-QQRVARIQT--D-QAHEIARLIRQY 514 (525)
Q Consensus 439 ~~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~~-~~~~~~~~t--~-qa~ei~~LI~~Y 514 (525)
.++.|-|+..||.++|++|++.+..++...|+-....+ .+ .-+|.....+.. .-....|.+ . +|.+|..-|..=
T Consensus 41 ~~V~L~IS~~Gv~v~d~~tk~~i~~~~i~~ISf~~~D~-~d-~~~FayIakd~~~~~~CHvF~~~~~~~A~~I~~tigqA 118 (127)
T cd01274 41 PRVTLDLTCNGVKFIDETFKTLIDGHGIYNIRCVCQDR-ED-LNFFAYITKDTENRHYCHVFCVLTSGLAAEIITTLGQA 118 (127)
T ss_pred CEEEEEEeCCeEEEEECCCCeEEEEeeeeEEEEEecCC-CC-ceEEEEEeeCCCCCEEEEEEEcCCHHHHHHHHHHHHHH
Confidence 37999999999999999999999999999986322222 22 233443333322 223445553 3 588888777654
Q ss_pred HH
Q psy8450 515 MS 516 (525)
Q Consensus 515 i~ 516 (525)
-+
T Consensus 119 F~ 120 (127)
T cd01274 119 FE 120 (127)
T ss_pred HH
Confidence 33
No 66
>PTZ00458 acyl CoA binding protein; Provisional
Probab=88.97 E-value=2.8 Score=34.07 Aligned_cols=62 Identities=16% Similarity=0.211 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHh--cCCCCCCChhhhhhccCcccccccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-C
Q psy8450 349 IVYDVAKLAALLHRA--ADMSHPPAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKW-P 425 (525)
Q Consensus 349 ~~~~~~~LaAl~~~~--~d~~~~~~~~~l~~~lP~~~~~~~~~~~~~w~~~I~~~~~~l~g~s~~~Ak~~fL~~~~~~-p 425 (525)
+.++..+|-||.-|+ |+++... |. +.. -..+.=..+|.+++|+|+++|+..|++++.++ |
T Consensus 22 s~d~~L~lYalyKQAt~G~c~~~~---------P~-~~d-------~~~raKw~AW~~l~~ms~~eA~~~YI~l~~~l~~ 84 (90)
T PTZ00458 22 SVEIKLDLYKYYKQSTVGNCNIKE---------PS-MFK-------YQDRKKYEAWKSIENLNREDAKKRYVEIVTELFP 84 (90)
T ss_pred CHHHHHHHHHHHhhhccCCCCCCC---------CC-ccc-------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 558889999998887 4543210 11 111 01122235899999999999999999999765 5
Q ss_pred CC
Q psy8450 426 LF 427 (525)
Q Consensus 426 ~y 427 (525)
-+
T Consensus 85 ~w 86 (90)
T PTZ00458 85 NW 86 (90)
T ss_pred cc
Confidence 44
No 67
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=88.43 E-value=1 Score=34.25 Aligned_cols=39 Identities=10% Similarity=0.190 Sum_probs=27.2
Q ss_pred cCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 227 LPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 227 lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
.+++....|.+.++++..||+++.|++.|+... .|.|.-
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~----~~~L~h 41 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPS----SYDLKH 41 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GG----G-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCcc----ceEEEE
Confidence 468888899999999999999999999999884 677764
No 68
>cd01786 STE50_RA Ubiquitin-like domain of STE50_RA. STE50_RA The fungal adaptor protein STE50 is an essential component of three MAPK-mediated signalling pathways, which control the mating response, invasive/filamentous growth and osmotolerance (HOG pathway), respectively. STE50 functions in cell signalling between the activated G protein and STE11. The domain architecture of STE50 includes an amino-terminal SAM (sterile alpha motif) domain in addition to the carboxy-terminal ubiquitin-like RA (RAS-associated) domain. While the SAM domain interacts with STE11, the RA domain interacts with CDC42 and RAS. Modulation of signal transduction by STE50 specifically affects the pheromone-response pathway in yeast.
Probab=87.11 E-value=3 Score=33.60 Aligned_cols=71 Identities=14% Similarity=0.119 Sum_probs=53.9
Q ss_pred EEEEeCCcchHHHHHHHHHHHhCCCC-CCCCcceEEEEEEcCCceeecCCCcchhhhhhHHHhhcCCcEEEEEeee
Q psy8450 233 TVINTKSTTVVEDICIEMCQLINVNN-DLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHKNQQVFYLIFCRS 307 (525)
Q Consensus 233 ~~v~v~s~tt~~ev~~~i~~~lgL~~-~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl~~~e~~~~~~~l~frr~ 307 (525)
+.+.|..-..+..|+....++-+|.+ .| ..|+||++-++ .+|.|.-+|.-+-+..++.+.+....+.+||+
T Consensus 27 K~~rvs~dDpC~kVL~~Alkry~I~~~dW--~~Y~L~I~Ygd--qER~L~ldEKPl~lFk~L~~~g~~P~fMLRrr 98 (98)
T cd01786 27 KQLRASKEDSCEKILKNAMKRHNLNDQDW--RQYVLVICYGD--QERILDLDEKPVIIFKNLKQQGLHPAIMLRRR 98 (98)
T ss_pred hheeeeccCcHHHHHHHHHHHcCCChhhh--hheEEEEEeCC--eeeeccccccHHHHHHHHHHcCCCCeeEeecC
Confidence 44555555678889999999999998 34 89999998643 47888888887777777777666677777764
No 69
>KOG1117|consensus
Probab=86.54 E-value=2 Score=47.97 Aligned_cols=78 Identities=17% Similarity=0.279 Sum_probs=60.5
Q ss_pred cCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhhhhHHHhhcCCcEEEEEee
Q psy8450 227 LPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHKNQQVFYLIFCR 306 (525)
Q Consensus 227 lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl~~~e~~~~~~~l~frr 306 (525)
.||.. +.+.|.++.|+.|++.+|..+-|+.... .+.|+.|++.+++..+|+|...+.++.-+-+|-.-..+-.|+.++
T Consensus 937 epd~~-~~ikVs~sm~aEEltneila~r~~~~~~-~d~watFEv~e~~eleRpLh~aekvleqvLqw~~l~csa~lvvkk 1014 (1186)
T KOG1117|consen 937 EPDCS-IIIKVSPSMTAEELTNEILAIRNIIPTK-GDIWATFEVIENEELERPLHYAEKVLEQVLQWSSLACSAYLVVKK 1014 (1186)
T ss_pred CCCcc-eeEecCccccHHHHHHHHHHhcCCCCCC-CCceEEEEEccCcccccCCchHHHHHHHHHhhhccCCcceEEeeh
Confidence 45544 7899999999999999999988887653 489999999988889999999999998666675422333344433
No 70
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=85.80 E-value=1.9 Score=30.74 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=34.7
Q ss_pred ecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEE
Q psy8450 226 RLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCI 270 (525)
Q Consensus 226 ~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~ 270 (525)
+++|+....+.+.+.+|++++.+.++++.|... ..|.|+..
T Consensus 3 ~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~----~~~~l~~~ 43 (69)
T cd00196 3 KLNDGKTVELLVPSGTTVADLKEKLAKKLGLPP----EQQRLLVN 43 (69)
T ss_pred EecCCCEEEEEcCCCCcHHHHHHHHHHHHCcCh----HHeEEEEC
Confidence 456888889999999999999999999999543 57999874
No 71
>cd01270 DYC-1 DYC-1 (DYB-1 binding and Capon related) Phosphotyrosine-binding (PTB) domain. DYC-1 (DYB-1 binding and Capon related) Phosphotyrosine-binding (PTB) domain. DYC-1 contains an N-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domains of both SHC and IRS-1, for example, bind to a NPXpY sequence. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.
Probab=85.63 E-value=5.4 Score=35.23 Aligned_cols=74 Identities=12% Similarity=0.108 Sum_probs=47.0
Q ss_pred eEEEEEccCceEEeecC------------ccceEEEeecccceeccccccCCCceEEEEEecccccceEEEEecc---cH
Q psy8450 440 QQILALNKHGVHFLNLL------------THETISSVPYGDVISTRKVRAESGTLYLEMKCGNLFQQRVARIQTD---QA 504 (525)
Q Consensus 440 ~~~LaIn~~Gi~~l~~~------------tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~~~~~~~~~~t~---qa 504 (525)
++.|.|+..||.+++.+ |+..+..+|...|.-....+.+...+.+--+-|....-....|.+. +|
T Consensus 44 kV~l~VS~~Gv~v~d~k~~~~~~~~~~~~tk~li~~~~i~rISf~a~D~~~~k~FayIakd~~~~~~~ChvF~~~k~~~A 123 (140)
T cd01270 44 KVTIHVSVDGVKVVLKKKKRKKKNWTWDESKILVMNHPIYRIFYVSHDSQDLKIFSYIARDGASNTFKCNVFKSHKKSQA 123 (140)
T ss_pred eEEEEEecCcEEEEecccccccccccccCcccEEEecCeeEEEEeecCCCCCcEEEEEecCCCCCceEEEEEEEcChhhH
Confidence 79999999999999875 5678899999988543322111221112112232223456667665 68
Q ss_pred HHHHHHHHH
Q psy8450 505 HEIARLIRQ 513 (525)
Q Consensus 505 ~ei~~LI~~ 513 (525)
++|...|.+
T Consensus 124 ~~I~~TIGq 132 (140)
T cd01270 124 MRIVRTVGQ 132 (140)
T ss_pred HHHHHHHHH
Confidence 999888765
No 72
>KOG0817|consensus
Probab=85.12 E-value=2.9 Score=36.99 Aligned_cols=68 Identities=16% Similarity=0.216 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHHh--cCCCC-CCChhhhhhccCcccccccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-
Q psy8450 349 IVYDVAKLAALLHRA--ADMSH-PPAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKW- 424 (525)
Q Consensus 349 ~~~~~~~LaAl~~~~--~d~~~-~~~~~~l~~~lP~~~~~~~~~~~~~w~~~I~~~~~~l~g~s~~~Ak~~fL~~~~~~- 424 (525)
+.++..+|-||.-|+ ||++- .|. +.. .-.+.=-++|+++.|+++++|+..|++.+.++
T Consensus 24 ~~ee~L~lYglyKQAt~G~~~~~kPg-----------~~d-------~~~k~Kw~AW~~l~~~s~~eA~~~Yv~~~~~l~ 85 (142)
T KOG0817|consen 24 SNEELLKLYGLYKQATVGDCNTPKPG-----------FFD-------EEGKAKWQAWNSLGGMSKEEAMEAYVEKVEELI 85 (142)
T ss_pred CHHHHHHHHHHHHhhccCCCCCCCCc-----------hhh-------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 668999999998876 55542 121 111 11122335599999999999999999999776
Q ss_pred CCCCceEEEE
Q psy8450 425 PLFGSSFFAI 434 (525)
Q Consensus 425 p~yGs~~F~v 434 (525)
|-|++.-=..
T Consensus 86 ~~~~~~~~~~ 95 (142)
T KOG0817|consen 86 PKYGAEAETE 95 (142)
T ss_pred HHhhcccccc
Confidence 7888874333
No 73
>cd01212 JIP JNK-interacting protein (JIP) Phosphotyrosine-binding (PTB) domain. JNK-interacting protein (JIP) Phosphotyrosine-binding (PTB) domain. JIP is a mitogen-activated protein kinase scaffold protein. JIP consists of a C-terminal SH3 domain, followed by a PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=83.81 E-value=7.3 Score=34.87 Aligned_cols=78 Identities=8% Similarity=0.037 Sum_probs=48.0
Q ss_pred CeEEEEEccCceEEeecCccceE-----EE-eecccceeccccccCCCc-eEEEEEecccccceEEEEecc-cHHHHHHH
Q psy8450 439 DQQILALNKHGVHFLNLLTHETI-----SS-VPYGDVISTRKVRAESGT-LYLEMKCGNLFQQRVARIQTD-QAHEIARL 510 (525)
Q Consensus 439 ~~~~LaIn~~Gi~~l~~~tk~~l-----~~-~~~~~I~s~~~~~~~~~~-~~~~i~~g~~~~~~~~~~~t~-qa~ei~~L 510 (525)
..+.|-|+.+||.++|+.+++.+ .. ++..+|+-.... +++.. ..|-.+-+...+-....|.+. .+++|+..
T Consensus 45 ~~v~L~VS~~Girl~D~~t~~~~~~~~~~~f~~l~nISFCa~d-~~~~r~F~FIak~~~~~~~~CHVF~s~~~~~~I~~a 123 (148)
T cd01212 45 QTCILEISDRGLRMVDRSGPNKDKKPCIDFFYSLKNISFCGFH-PRDHRYFGFITKHPLLQRFACHVFKSSESTRPVAEA 123 (148)
T ss_pred cEEEEEEecCcEEEEecCCCcccccchhhccccccceEEEEEc-CCCCcEEEEEeccCCCCceEEEEEEeCCcchHHHHH
Confidence 37999999999999999988532 12 357887544433 23322 223223333333467778775 58888888
Q ss_pred HHHHHHH
Q psy8450 511 IRQYMSL 517 (525)
Q Consensus 511 I~~Yi~~ 517 (525)
|..=.+.
T Consensus 124 IG~AF~~ 130 (148)
T cd01212 124 VGRAFQR 130 (148)
T ss_pred HHHHHHH
Confidence 7654333
No 74
>KOG4335|consensus
Probab=82.72 E-value=1.4 Score=46.33 Aligned_cols=165 Identities=18% Similarity=0.267 Sum_probs=107.2
Q ss_pred EEEEEeeeccccCCc---ccchhhHHhhhhhhchhhhhcc--ccccCCCCCCcchHHHHHHHHHH-HHH--hcCCCCCC-
Q psy8450 300 FYLIFCRSVWYFPLR---LDCQLYVQVLFNQIAPDYLEGL--LLVLPNEQIPQDIVYDVAKLAAL-LHR--AADMSHPP- 370 (525)
Q Consensus 300 ~~l~frr~~~~~p~~---~d~~~~~~l~y~Q~~~d~l~G~--~~~~~~~~~p~~~~~~~~~LaAl-~~~--~~d~~~~~- 370 (525)
..+-+||+.+....+ .-++--..+.|..+...++.+. ++| ..++..+++|+ ++. .+.+....
T Consensus 198 ~~~~~~rn~~~~~~re~~~~~ee~a~~n~eeA~~nvl~a~~~~~~---------~Ve~~~~~ga~~~c~lQ~gn~~~~r~ 268 (558)
T KOG4335|consen 198 PFLQFRRNVFFPKGRELQIIDEEVARLNYEEAKGNVLAARNKYLC---------DVEDCEALGALRVCRLQLGNYQPVRP 268 (558)
T ss_pred cchHHhhhhhcccCcchhhhHHHHHHHhHHHHHHhHHHHhhhhhH---------HHHHHHHhhhhheehhhccCCccccc
Confidence 456677776654221 1123445667788888888887 666 77999999999 443 33332211
Q ss_pred ------ChhhhhhccCcccccc--------cC---CCHHHHHHHHHHHHHhcCCCC---HHHHH-----HHHHHHHhcCC
Q psy8450 371 ------AMKETKFLLPKPALTQ--------RD---IKPAQWVQMVQSHWTQTAPLH---SIQAK-----AQLLEILSKWP 425 (525)
Q Consensus 371 ------~~~~l~~~lP~~~~~~--------~~---~~~~~w~~~I~~~~~~l~g~s---~~~Ak-----~~fL~~~~~~p 425 (525)
..+.++.|+|..+.+. +. ....+|. .+.+.|+.+...+ ..+++ ..+++.+-+-|
T Consensus 269 ~~~gir~~~~~qs~f~~w~cs~~lslqlk~~h~p~~~v~~wp-~LL~e~~N~sp~~d~p~~~l~r~v~l~~~~ek~iedp 347 (558)
T KOG4335|consen 269 AACGIRLSEKLQSFFPAWLCSRGLSLQLKLRHRPARAVPGWP-ELLNEYRNVSPVSDDPGCELARGVHLRAYLEKCIEDP 347 (558)
T ss_pred hhhhcchHHHHHHHhHHHHhhcchhhhhhhccCCcccccccH-HHHHHHhcCCccCCccchhhhhcccchhhhHhhhhch
Confidence 1245778888765321 00 1113455 5777788776432 22332 34677778889
Q ss_pred CCCceEEEEEe-e--------CC--eEEEE-EccCceEEeecCccceEEEeecccceeccc
Q psy8450 426 LFGSSFFAIKR-N--------GD--QQILA-LNKHGVHFLNLLTHETISSVPYGDVISTRK 474 (525)
Q Consensus 426 ~yGs~~F~v~~-~--------~~--~~~La-In~~Gi~~l~~~tk~~l~~~~~~~I~s~~~ 474 (525)
+||.-+|+-.. . .+ .+.+| |+-.|+++.+...|..+...+++++.+|-.
T Consensus 348 ~~~~ilf~eaR~n~L~Gfy~~~~~k~v~va~i~l~~vhv~~Ss~Kh~~~vl~lEelk~~~~ 408 (558)
T KOG4335|consen 348 FYGCILFHEARDNPLQGFYHRGGRKSVSVASISLEGVHVVDSSEKHVLLVLNLEELKSWDH 408 (558)
T ss_pred hhhhhhhhhhhhhhhccccccCCceeeehhhhhcccceeeccccccchhcccHHHhcccCC
Confidence 99999998433 1 11 78899 999999999987788999999999988743
No 75
>cd01210 EPS8 Epidermal growth factor receptor kinase substrate (EPS8) Phosphotyrosine-binding (PTB) domain. Epidermal growth factor receptor kinase substrate (EPS8) Phosphotyrosine-binding (PTB) domain. EPS8 is a regulator of Rac signaling. It consists of a PTB and an SH3 domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=81.89 E-value=6.8 Score=33.88 Aligned_cols=76 Identities=16% Similarity=0.136 Sum_probs=52.1
Q ss_pred eEEEEEccCceEEeecCccceEEEeecccceeccccccCCC-c--eEEEEEecccccceE--EEEecccHHHHHHHHHHH
Q psy8450 440 QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESG-T--LYLEMKCGNLFQQRV--ARIQTDQAHEIARLIRQY 514 (525)
Q Consensus 440 ~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~-~--~~~~i~~g~~~~~~~--~~~~t~qa~ei~~LI~~Y 514 (525)
+.+|-|+...|.++|++||+.+..||++.|........... + +.|...-++..++.. |+|+.--|..|..=|+..
T Consensus 43 ~m~lqv~~~~v~LlD~etk~elE~fpl~~I~~~~a~~~~~~ynslL~~vvq~~~~~~~e~hlFQc~~v~A~~i~~DL~~a 122 (127)
T cd01210 43 KMILRVRYQWVTLLDYETKEELESYPLSLIQEPTAFTSMELYNSILLFVVQEPGGSRTEMHIFQCQRVGAEHLVEDLQQA 122 (127)
T ss_pred ceEEEEcCCeEEEEcCCCcChhhcCCHhhccccceecCCCCcCceEEEEEeCCCCCCCcEEEEEeccccHHHHHHHHHHH
Confidence 78999999999999999999999999999987655433211 1 334433333334444 555556677777666655
Q ss_pred H
Q psy8450 515 M 515 (525)
Q Consensus 515 i 515 (525)
+
T Consensus 123 ~ 123 (127)
T cd01210 123 L 123 (127)
T ss_pred H
Confidence 4
No 76
>KOG3535|consensus
Probab=80.45 E-value=5.8 Score=40.79 Aligned_cols=78 Identities=17% Similarity=0.239 Sum_probs=51.4
Q ss_pred eEEEEEccCceEEeecCccceEEEeecccceeccccccCCCceEEEEEecccccceEEEEecccHHH-HHHHHHHHHHHH
Q psy8450 440 QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNLFQQRVARIQTDQAHE-IARLIRQYMSLD 518 (525)
Q Consensus 440 ~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~~~~~~~~~~t~qa~e-i~~LI~~Yi~~~ 518 (525)
++||-|+-.||.++|.+|+.+++.+|-++|.-+.....+... |-...|..-+.+-+-+.|.|+.| ..-=|....+++
T Consensus 93 rI~l~Is~~GIKI~DEKtGav~H~hpV~~ISfIArD~tD~RA--FGyVcG~eG~hkF~aIKTaQaAep~VldlrDlFQvI 170 (557)
T KOG3535|consen 93 RITLQISIDGIKILDEKTGAVLHNHPVSRISFIARDSTDARA--FGYVCGEEGKHKFYAIKTAQAAEPAVLDLRDLFQVI 170 (557)
T ss_pred eEEEEEeecceEEeeccccceeccCccceeeeeecccccccc--eeeeecCCCceeEEEEecccccchhhHhHHHHHHHH
Confidence 799999999999999999999999999999765443222221 22234544344567778876433 333344444444
Q ss_pred h
Q psy8450 519 R 519 (525)
Q Consensus 519 ~ 519 (525)
.
T Consensus 171 y 171 (557)
T KOG3535|consen 171 Y 171 (557)
T ss_pred H
Confidence 3
No 77
>cd01209 SHC SHC phosphotyrosine-binding (PTB) domain. SHC phosphotyrosine-binding (PTB) domain. SHC is a substrate for receptor tyrosine kinases, which can interact with phosphoproteins at NPXY motifs. SHC contains an PTB domain followed by an SH2 domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=80.43 E-value=8.3 Score=34.75 Aligned_cols=77 Identities=10% Similarity=0.108 Sum_probs=52.3
Q ss_pred eEEEEEccCceEEeecCccceEEEeecccceeccccccCCCceEEEEEecccc-cceEEEEeccc--HHHHHHHHHHHHH
Q psy8450 440 QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNLF-QQRVARIQTDQ--AHEIARLIRQYMS 516 (525)
Q Consensus 440 ~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~~-~~~~~~~~t~q--a~ei~~LI~~Yi~ 516 (525)
++-|.|+.+||.+++++|++++..+++..|+ +..-...+..-+|...--+.. +...+.|++.. |.+|..-|.+=.+
T Consensus 76 ~V~l~IS~~~v~~~~~~t~~ii~~H~l~~IS-faa~gd~d~~~~~ayIAKd~~~~r~ChVf~~~~~lAq~Ii~TIGQAF~ 154 (160)
T cd01209 76 PITINVSSSSLNLMAQDCKQIIANHHMQSIS-FASGGDPDTAEYVAYIAKNPDNQRACHVLECPEGLAQDLISTIGQAFE 154 (160)
T ss_pred eEEEEEEeeEEEEeccCchhHHhcCCCcceE-EEeCCCCCcceeEEEEEcCCCCCceeEEEEcCCchHHHHHHHHHHHHH
Confidence 8999999999999999999999999999985 432111111123322222222 23578888766 9999888866444
Q ss_pred H
Q psy8450 517 L 517 (525)
Q Consensus 517 ~ 517 (525)
+
T Consensus 155 l 155 (160)
T cd01209 155 L 155 (160)
T ss_pred H
Confidence 4
No 78
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=79.89 E-value=6.2 Score=33.50 Aligned_cols=72 Identities=11% Similarity=0.220 Sum_probs=51.8
Q ss_pred eEEEEEccCceEEeecCccceEEEeecccceeccccccCCCc--eEEEEEecccccceEEEEecccHHHHHHHHHHHHH
Q psy8450 440 QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGT--LYLEMKCGNLFQQRVARIQTDQAHEIARLIRQYMS 516 (525)
Q Consensus 440 ~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~--~~~~i~~g~~~~~~~~~~~t~qa~ei~~LI~~Yi~ 516 (525)
.+++| .+|+-|++.++-+--..+||++|..+...-.=.|. ..|.|.+- +..++.|-++++.++-..+..|+.
T Consensus 26 kimiG--DkaFEFyn~~n~~dyIQIPW~eI~~V~a~V~fkgk~I~RF~I~Tk---~~G~f~Fsskd~k~~Lk~~r~yv~ 99 (118)
T PF06115_consen 26 KIMIG--DKAFEFYNDRNVEDYIQIPWEEIDYVIASVSFKGKWIPRFAIFTK---KNGKFTFSSKDSKKVLKAIRKYVG 99 (118)
T ss_pred eEEEc--ccceEeecCCChhhcEEeChhheeEEEEEEEECCCEEeeEEEEEC---CCCEEEEEECChHHHHHHHHHhcC
Confidence 45544 78889999888888889999999886543211111 23555432 236899999999999999999974
No 79
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=79.86 E-value=2.7 Score=33.34 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=30.2
Q ss_pred CceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEE
Q psy8450 219 NSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIV 271 (525)
Q Consensus 219 ~~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~ 271 (525)
.+.++ +.-+||..+ |++++..|+.++.+.|.+.++++.. .|+||...
T Consensus 4 ~milR-vrS~dG~~R-ie~~~~~t~~~L~~kI~~~l~~~~~----~~~L~~~~ 50 (80)
T PF11543_consen 4 SMILR-VRSKDGMKR-IEVSPSSTLSDLKEKISEQLSIPDS----SQSLSKDR 50 (80)
T ss_dssp --EEE-EE-SSEEEE-EEE-TTSBHHHHHHHHHHHS---TT----T---BSSG
T ss_pred cEEEE-EECCCCCEE-EEcCCcccHHHHHHHHHHHcCCCCc----ceEEEecC
Confidence 35566 467899965 6999999999999999999999874 68887543
No 80
>cd01272 FE65_N Fe65 Phosphotyrosine-binding (PTB) domain. Fe65 Phosphotyrosine-binding (PTB) domain. Fe65 is an amyloid beta A4 precursor protein-binding. It contains an N-terminal WW domain followed by two PTB domains. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=77.81 E-value=17 Score=31.55 Aligned_cols=80 Identities=13% Similarity=0.123 Sum_probs=54.0
Q ss_pred eEEEEEccCceEEeecCccceEEEeecccceeccccccCCCceEEEEEecccc--cceEEEEecccHHHHHHHHHHHHHH
Q psy8450 440 QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNLF--QQRVARIQTDQAHEIARLIRQYMSL 517 (525)
Q Consensus 440 ~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~~--~~~~~~~~t~qa~ei~~LI~~Yi~~ 517 (525)
.+++-+...-+.++||.++..|+++|...|.=|+.-+.+...+-+.....+.. +=+.|.|+ ..|..|+.-+...|+-
T Consensus 54 ~~~m~L~~g~lkLiDP~~~s~LhSqPI~~IRvwGvGrdngrdFA~vard~~T~~~~CHVFRC~-~pak~ia~~l~~~c~~ 132 (138)
T cd01272 54 DLFMDLDEGALKLIDPENLTVLHSQPIHTIRVWGVGRDNGRDFAYVIRDERTRGSNCHVFRCD-TRAKDIATELRRICRH 132 (138)
T ss_pred eeEEEecCCceEeeCCCCCceEEeeeeeEEEEEEecCCCCcceEEEeecCCCceeEEEEEEcC-CCCccchHHHHHHHHh
Confidence 78888888889999999999999999999988876543322222222222111 12345553 4688888888888776
Q ss_pred Hhh
Q psy8450 518 DRQ 520 (525)
Q Consensus 518 ~~~ 520 (525)
+..
T Consensus 133 ~m~ 135 (138)
T cd01272 133 PMS 135 (138)
T ss_pred hhh
Confidence 653
No 81
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=77.74 E-value=6.4 Score=30.43 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=34.7
Q ss_pred EecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 225 YRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 225 v~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
+...+|....++|++++|++++-+.|+++.|++. ....|+.
T Consensus 5 vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~----~~q~L~~ 45 (74)
T cd01807 5 VKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPE----EQQRLLF 45 (74)
T ss_pred EEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCH----HHeEEEE
Confidence 4566888888999999999999999999999976 4577764
No 82
>cd01780 PLC_epsilon_RA Ubiquitin-like domain of Phosphatidylinositide-specific phospholipase. PLC_epsilon_RA Phosphatidylinositide-specific phospholipase C (PLC) is a signaling enzyme that hydrolyzes membrane phospholipids to generate inositol triphosphate. PLC-epsilon represents a novel forth class of PLC that has a PLC catalytic core domain, a CDC25 guanine nucleotide exchange factor domain and two RA (Ras-association) domains of which the second is critical for Ras activation of the enzyme.
Probab=76.08 E-value=15 Score=29.79 Aligned_cols=67 Identities=12% Similarity=0.116 Sum_probs=51.0
Q ss_pred cCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcC--------CceeecCCCcchhhhhhHHHh
Q psy8450 227 LPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEG--------DAFTMPLAKEEYILDVTTELH 294 (525)
Q Consensus 227 lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~--------~~~~~~L~~~~~i~Dvl~~~e 294 (525)
.||.....+.++..+|++||++++..+.+=+... ...|=|.+.... ....|.|..+|.+++.-+.|.
T Consensus 9 s~dqP~~il~a~~~STa~Dvi~Qal~KA~rs~~~-~~~fVLvEEv~~~~~~~~~~~~~QRVL~~~E~v~~aQs~Wk 83 (93)
T cd01780 9 SPDQPYAILRAPRVSTAQDVIQQTLCKARRSNPN-PSDFVLVEEVCKDTKNNKTPKSSQRILLDQECVYQAQSKWK 83 (93)
T ss_pred CCCCCeeEEEccccccHHHHHHHHHHHhccCCCC-ccceEEEEEeeccccccCCCChhHhhhhcccchHHHHhhhc
Confidence 6888888899999999999999999998775443 378999886521 123455667788888888884
No 83
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=75.99 E-value=5.7 Score=30.56 Aligned_cols=54 Identities=15% Similarity=0.195 Sum_probs=40.6
Q ss_pred EecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhh
Q psy8450 225 YRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILD 288 (525)
Q Consensus 225 v~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~D 288 (525)
+.+++|....+++++++|++++-+.|+++-|++. +...|+.. |+ +|+++..+.|
T Consensus 3 vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~----~~q~Li~~--G~----~L~D~~~l~~ 56 (70)
T cd01794 3 VRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDP----CCQRWFFS--GK----LLTDKTRLQE 56 (70)
T ss_pred EEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCH----HHeEEEEC--Ce----ECCCCCCHHH
Confidence 4677888899999999999999999999999865 45677642 32 4555554433
No 84
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=75.21 E-value=6.6 Score=29.97 Aligned_cols=54 Identities=13% Similarity=0.184 Sum_probs=39.8
Q ss_pred EecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhh
Q psy8450 225 YRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILD 288 (525)
Q Consensus 225 v~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~D 288 (525)
+..++|....+++++..|++++-+.|+++.|++. ....|+. +|+ +|.++..+.|
T Consensus 3 vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~----~~q~Li~--~G~----~L~d~~~l~~ 56 (70)
T cd01798 3 VRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPP----DQLRVIF--AGK----ELRNTTTIQE 56 (70)
T ss_pred EEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCH----HHeEEEE--CCe----ECCCCCcHHH
Confidence 4566888889999999999999999999999865 3566654 233 3555555444
No 85
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=74.48 E-value=15 Score=28.99 Aligned_cols=49 Identities=18% Similarity=0.131 Sum_probs=36.8
Q ss_pred CceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEE
Q psy8450 219 NSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCI 270 (525)
Q Consensus 219 ~~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~ 270 (525)
+.....+.||||+...-.+..+.|+++|-+-|..+.+-... ..|.|...
T Consensus 3 p~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~---~~f~L~t~ 51 (79)
T cd01770 3 PTTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAA---RPFTLMTA 51 (79)
T ss_pred CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCC---CCEEEecC
Confidence 34444478999998888999999999999999887654332 46888653
No 86
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=73.97 E-value=9.3 Score=29.60 Aligned_cols=43 Identities=16% Similarity=0.251 Sum_probs=38.0
Q ss_pred EecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEE
Q psy8450 225 YRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIV 271 (525)
Q Consensus 225 v~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~ 271 (525)
+||||...-.|+|.+..|++|++....+.-||.. +..+.|...
T Consensus 4 ~~LPnqQrT~V~vrpG~tl~daL~KaLk~R~l~p----e~C~V~~~~ 46 (74)
T cd01816 4 VFLPNKQRTVVNVRPGMTLRDALAKALKVRGLQP----ECCAVFRLG 46 (74)
T ss_pred EECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCh----hHeEEEEcC
Confidence 5799999889999999999999999999999985 578888764
No 87
>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism]
Probab=72.83 E-value=16 Score=28.33 Aligned_cols=77 Identities=17% Similarity=0.251 Sum_probs=49.6
Q ss_pred HhhhhhhchhhhhccccccCCCCCCcchHHHHHHHHHHHHHh--cCCC-CCCChhhhhhccCcccccccCCCHHHHHHHH
Q psy8450 322 QVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRA--ADMS-HPPAMKETKFLLPKPALTQRDIKPAQWVQMV 398 (525)
Q Consensus 322 ~l~y~Q~~~d~l~G~~~~~~~~~~p~~~~~~~~~LaAl~~~~--~d~~-~~~~~~~l~~~lP~~~~~~~~~~~~~w~~~I 398 (525)
...|.|+..|+-+= . +-| +.+++.+|-||.-++ +|.+ ..|..-+ + .. .-=
T Consensus 3 s~~Feqa~~dV~~L--~-----~kP--~~d~LLkLYAL~KQ~s~GD~~~ekPG~~d--------~-----~g-----r~K 55 (87)
T COG4281 3 STRFEQAQTDVKEL--S-----EKP--SNDELLKLYALFKQGSVGDNDGEKPGFFD--------I-----VG-----RYK 55 (87)
T ss_pred hhHHHHHHHHHHHh--c-----cCC--CcHHHHHHHHHHHhccccccCCCCCCccc--------c-----cc-----chh
Confidence 34577888776431 1 224 558999999998875 4533 2222111 1 01 112
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcCC
Q psy8450 399 QSHWTQTAPLHSIQAKAQLLEILSKWP 425 (525)
Q Consensus 399 ~~~~~~l~g~s~~~Ak~~fL~~~~~~p 425 (525)
.++|..+.|.|.++|+..|+.++.++.
T Consensus 56 ~eAW~~LKGksqedA~qeYialVeeLk 82 (87)
T COG4281 56 YEAWAGLKGKSQEDARQEYIALVEELK 82 (87)
T ss_pred HHHHhhccCccHHHHHHHHHHHHHHHH
Confidence 357889999999999999999987663
No 88
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=71.14 E-value=12 Score=28.90 Aligned_cols=41 Identities=20% Similarity=0.232 Sum_probs=34.7
Q ss_pred EecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 225 YRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 225 v~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
|..++|....++++++.|++++-+.|..+.|++. +.+.|..
T Consensus 3 vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~----~~q~L~~ 43 (74)
T cd01810 3 VRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQA----DQFWLSF 43 (74)
T ss_pred EECCCCCEEEEEECCcChHHHHHHHHHHHhCCCH----HHeEEEE
Confidence 4567888889999999999999999999999865 4677764
No 89
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=70.16 E-value=50 Score=25.78 Aligned_cols=75 Identities=15% Similarity=0.262 Sum_probs=52.6
Q ss_pred EecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhhhhHHHhh-cCCcEEEE
Q psy8450 225 YRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHK-NQQVFYLI 303 (525)
Q Consensus 225 v~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl~~~e~-~~~~~~l~ 303 (525)
+++.|+....+.+.+..+-.++...|..++|+.. ..|.|...++++. +..+..++-+.+++..... .....+|+
T Consensus 6 ~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~----~~~~l~Y~D~dgD-~V~i~sd~Dl~~a~~~~~~~~~~~lrl~ 80 (84)
T PF00564_consen 6 VRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLD----EDFQLKYKDEDGD-LVTISSDEDLQEAIEQAKESGSKTLRLF 80 (84)
T ss_dssp EEETTEEEEEEEECSTSHHHHHHHHHHHHHTTST----SSEEEEEEETTSS-EEEESSHHHHHHHHHHHHHCTTSCEEEE
T ss_pred EEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCC----ccEEEEeeCCCCC-EEEeCCHHHHHHHHHHHHhcCCCcEEEE
Confidence 4565666554889988999999999999999983 5799999885543 3456666666666655543 23355555
Q ss_pred E
Q psy8450 304 F 304 (525)
Q Consensus 304 f 304 (525)
.
T Consensus 81 v 81 (84)
T PF00564_consen 81 V 81 (84)
T ss_dssp E
T ss_pred E
Confidence 4
No 90
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=69.44 E-value=51 Score=25.62 Aligned_cols=65 Identities=20% Similarity=0.333 Sum_probs=46.5
Q ss_pred eeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhhhhHHH
Q psy8450 222 RQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTEL 293 (525)
Q Consensus 222 ~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl~~~ 293 (525)
+.+ ++ +|..+.+.+.+..+-.|+.+.|+.++++.. ..|.|-..++++. +..+..++-+..+++..
T Consensus 4 vK~-~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~----~~~~l~Y~Dedgd-~v~l~sd~Dl~~a~~~~ 68 (81)
T smart00666 4 VKL-RY-GGETRRLSVPRDISFEDLRSKVAKRFGLDN----QSFTLKYQDEDGD-LVSLTSDEDLEEAIEEY 68 (81)
T ss_pred EEE-EE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCC----CCeEEEEECCCCC-EEEecCHHHHHHHHHHH
Confidence 443 45 677788999999999999999999999875 3689988765433 34566665444444433
No 91
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=67.37 E-value=25 Score=28.28 Aligned_cols=48 Identities=10% Similarity=0.073 Sum_probs=38.7
Q ss_pred ceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCC
Q psy8450 220 SKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGD 274 (525)
Q Consensus 220 ~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~ 274 (525)
+.+. +|+.|+ ...+.|.+.++-+|+++.|..++|+.+ .|.+-..++|+
T Consensus 3 ikVK-v~~~~D-v~~i~v~~~i~f~dL~~kIrdkf~~~~-----~~~iKykDEGD 50 (86)
T cd06408 3 IRVK-VHAQDD-TRYIMIGPDTGFADFEDKIRDKFGFKR-----RLKIKMKDDGD 50 (86)
T ss_pred EEEE-EEecCc-EEEEEcCCCCCHHHHHHHHHHHhCCCC-----ceEEEEEcCCC
Confidence 4455 467555 578899999999999999999999964 59999887754
No 92
>PTZ00044 ubiquitin; Provisional
Probab=66.43 E-value=14 Score=28.53 Aligned_cols=41 Identities=10% Similarity=0.205 Sum_probs=34.1
Q ss_pred EecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 225 YRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 225 v~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
+...+|....+.+++.+|++++-+.|+++.|++. +..-|+.
T Consensus 5 vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~----~~q~L~~ 45 (76)
T PTZ00044 5 IKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDV----KQIRLIY 45 (76)
T ss_pred EEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCH----HHeEEEE
Confidence 3456888888999999999999999999999865 3567764
No 93
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=65.86 E-value=12 Score=28.67 Aligned_cols=41 Identities=5% Similarity=-0.040 Sum_probs=33.9
Q ss_pred EecC-CCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 225 YRLP-GGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 225 v~lp-dg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
+..+ +|....+++++..|++++-+.|+.+-|++. +...|+.
T Consensus 3 v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~----~~q~Li~ 44 (71)
T cd01796 3 VYTARSETTFSLDVDPDLELENFKALCEAESGIPA----SQQQLIY 44 (71)
T ss_pred EEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCH----HHeEEEE
Confidence 3556 888889999999999999999999999876 3566654
No 94
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=65.26 E-value=25 Score=27.55 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=36.6
Q ss_pred EEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEE
Q psy8450 224 LYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCI 270 (525)
Q Consensus 224 iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~ 270 (525)
-+.||||+...-.+.+..|+++|.+-|...++.... ..|.|...
T Consensus 10 ~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~---~~f~L~~~ 53 (82)
T PF00789_consen 10 QVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEE---SDFELITA 53 (82)
T ss_dssp EEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTT---SSEEEEES
T ss_pred EEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCC---ccEEEEeC
Confidence 368999998888999999999999999988877764 35888653
No 95
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=63.76 E-value=30 Score=27.90 Aligned_cols=62 Identities=8% Similarity=0.149 Sum_probs=44.0
Q ss_pred cCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhhhh
Q psy8450 227 LPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVT 290 (525)
Q Consensus 227 lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl 290 (525)
=|.|...-+.+.++....++.++|++++|+.... ..+|.|-+.++++. |..|.-+.-+.+.+
T Consensus 7 ~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~-~~~~~L~YlDDEgD-~VllT~D~DL~e~v 68 (86)
T cd06409 7 DPKGRVHRFRLRPSESLEELRTLISQRLGDDDFE-THLYALSYVDDEGD-IVLITSDSDLVAAV 68 (86)
T ss_pred CCCCCEEEEEecCCCCHHHHHHHHHHHhCCcccc-CCcccEEEEcCCCC-EEEEeccchHHHHH
Confidence 4677777889998889999999999999998731 15899988764333 44454444444443
No 96
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=62.64 E-value=20 Score=28.12 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=29.4
Q ss_pred EecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCC
Q psy8450 225 YRLPGGSETVINTKSTTVVEDICIEMCQLINVNND 259 (525)
Q Consensus 225 v~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~ 259 (525)
+...+|....+++++..|++|+-+.|+++.|+...
T Consensus 6 Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~ 40 (78)
T cd01804 6 IHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKE 40 (78)
T ss_pred EEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChH
Confidence 34557777889999999999999999999998653
No 97
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=62.31 E-value=16 Score=27.97 Aligned_cols=41 Identities=20% Similarity=0.149 Sum_probs=33.7
Q ss_pred EecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 225 YRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 225 v~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
|...+|....+.+++.+|++++-+.|+.+.|++.. ..-|+.
T Consensus 5 v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~----~qrL~~ 45 (76)
T cd01806 5 VKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQ----QQRLIY 45 (76)
T ss_pred EEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChh----hEEEEE
Confidence 45567887889999999999999999999998764 466663
No 98
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=61.69 E-value=13 Score=28.07 Aligned_cols=38 Identities=11% Similarity=0.194 Sum_probs=32.1
Q ss_pred CCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 228 PGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 228 pdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
++|....+++++++|+.++-+.|+.+.|++.. ..-|+.
T Consensus 3 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~----~~~L~~ 40 (69)
T PF00240_consen 3 LSGKTFTLEVDPDDTVADLKQKIAEETGIPPE----QQRLIY 40 (69)
T ss_dssp TTSEEEEEEEETTSBHHHHHHHHHHHHTSTGG----GEEEEE
T ss_pred CCCcEEEEEECCCCCHHHhhhhcccccccccc----cceeee
Confidence 47778899999999999999999999998764 456654
No 99
>cd01211 GAPCenA GAPCenA Phosphotyrosine-binding (PTB) domain. GAPCenA Phosphotyrosine-binding (PTB) domain. GAPCenA is a centrosome-associated GTPase activating protein (GAP) for rab 6. It consists of an N-terminal PTB domain and a C-terminal TBC domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=61.50 E-value=91 Score=26.88 Aligned_cols=77 Identities=12% Similarity=0.129 Sum_probs=43.2
Q ss_pred EEEEE--ccCc-eEEeecCccceEEEeecccceeccccccC-CCceEEEEE--ecccccceEEEEecccHHHHHHHHHHH
Q psy8450 441 QILAL--NKHG-VHFLNLLTHETISSVPYGDVISTRKVRAE-SGTLYLEMK--CGNLFQQRVARIQTDQAHEIARLIRQY 514 (525)
Q Consensus 441 ~~LaI--n~~G-i~~l~~~tk~~l~~~~~~~I~s~~~~~~~-~~~~~~~i~--~g~~~~~~~~~~~t~qa~ei~~LI~~Y 514 (525)
+.|-| +.+| |.++|+.|+..+.+||.-.|.-+..-..+ ...-.|.+. .++...-..-.|..+-.+.....+.++
T Consensus 41 Vtl~Vp~~seG~V~l~D~~t~~~ias~~I~rI~fC~rG~~~t~e~~cFAft~s~~~se~~qcHVFrC~~~eav~kil~sF 120 (125)
T cd01211 41 VTLVVPNNIEGTVKLIDAQSNKVIASFSIVNIRFCIRGESSTSENNCFAFTFTHKISILFQCHVFRCSIAEAVAKALYSF 120 (125)
T ss_pred EEEEecCCCCceEEEEcCCCCcEEEEEEEEEEEEEEecCCCCcccccEEEEeecCCceEEEEEEEecCCHHHHHHHHHHH
Confidence 34444 3666 89999999999999999999755331111 011234433 232211123334445556666666666
Q ss_pred HHH
Q psy8450 515 MSL 517 (525)
Q Consensus 515 i~~ 517 (525)
...
T Consensus 121 ~~A 123 (125)
T cd01211 121 SYA 123 (125)
T ss_pred HHh
Confidence 544
No 100
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=60.85 E-value=27 Score=26.51 Aligned_cols=42 Identities=24% Similarity=0.354 Sum_probs=35.4
Q ss_pred EecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 225 YRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 225 v~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
+...+|....+.|.+.++++.+.+..|++.|++.. ..+-|+.
T Consensus 5 v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~---~~~~l~f 46 (72)
T PF11976_consen 5 VRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPE---ESIRLIF 46 (72)
T ss_dssp EEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT----TTEEEEE
T ss_pred EEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCcc---ceEEEEE
Confidence 34568888899999999999999999999999984 3577776
No 101
>KOG4371|consensus
Probab=60.50 E-value=8 Score=44.39 Aligned_cols=114 Identities=16% Similarity=0.034 Sum_probs=72.2
Q ss_pred EecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhhhhHHHhh---------
Q psy8450 225 YRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHK--------- 295 (525)
Q Consensus 225 v~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl~~~e~--------- 295 (525)
+...+|.....++.+.|.+.|+..-. .+. +-|||.+-..++ -++.|-..+..+
T Consensus 42 ~~t~~~~S~~~e~s~~T~~hdv~~~~------~d~---elfglA~~~r~e---------y~f~dp~~k~skyg~k~~r~s 103 (1332)
T KOG4371|consen 42 TSTSSGNSTQKESSPFTDFHDVPPPP------VDP---ELFGLAQNRREE---------YSFEDPFLKESKYGGKGSRLS 103 (1332)
T ss_pred EEeecCceeeeecccccccccCCCCC------Ccc---cccchhhhhccc---------ccccChhhhhhhhcCCCCccc
Confidence 34557777788888888888876432 344 678887654221 122232222211
Q ss_pred ----c----CCcEEEEEeeecccc-CCcccchhhHHhhhhhhchhhhhccccccCCCCCCcchHHHHHHHHHHHHHh
Q psy8450 296 ----N----QQVFYLIFCRSVWYF-PLRLDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRA 363 (525)
Q Consensus 296 ----~----~~~~~l~frr~~~~~-p~~~d~~~~~~l~y~Q~~~d~l~G~~~~~~~~~~p~~~~~~~~~LaAl~~~~ 363 (525)
. ...+.|.||..+|.+ +..+.++...+=.|.|.++|++.-..+- | ..++-+..+|+|.++.
T Consensus 104 ~~h~ld~~~rp~l~l~frv~~yi~~~~~l~~~~~r~~yylql~~n~l~~~apr------~-~~e~a~~~~a~lalq~ 173 (1332)
T KOG4371|consen 104 QSHRLDETFRPELSLEFRVSGYIRNNISLAASPGRKSYYLQLFTNTLAPVAPR------P-APEKAAEEYARLALQN 173 (1332)
T ss_pred cccccCccCCeeEEEEEEEEEeecCceeccCCCCccchhhhhhhhhhccccCC------c-chHHHHHHHHhhhhcC
Confidence 1 235789999998875 5544556677788999999998865543 2 1456667788887764
No 102
>PF06017 Myosin_TH1: Myosin tail; InterPro: IPR010926 These proteins share a region of sequence similarity with the tail of myosin (for example O00159 from SWISSPROT). Myosins act as molecular motors. ; GO: 0003774 motor activity, 0016459 myosin complex
Probab=59.88 E-value=44 Score=31.39 Aligned_cols=73 Identities=10% Similarity=0.188 Sum_probs=51.3
Q ss_pred eEEEEEccCceEEe------ecCccceEEEeecccceeccccccCCCceEEEEEecccccceEEEEecccHHHHHHHHHH
Q psy8450 440 QQILALNKHGVHFL------NLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNLFQQRVARIQTDQAHEIARLIRQ 513 (525)
Q Consensus 440 ~~~LaIn~~Gi~~l------~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~~~~~~~~~~t~qa~ei~~LI~~ 513 (525)
+.+|-|..+.|+++ ++........+|+++|.++...+.+++ +|.|++. ....+.|++....|+...|..
T Consensus 67 ~R~livT~~~iY~l~~~~~~~~~~~~~kr~i~l~~I~~IsvS~~~D~--~~vihv~---~~~D~il~~~~k~Elv~~L~~ 141 (199)
T PF06017_consen 67 PRILIVTDKAIYLLDQRKVKDPKKYKLKRRIPLSDITGISVSPLSDN--FFVIHVP---GEGDLILESDFKTELVTILCK 141 (199)
T ss_pred ceEEEEeCCeEEEEEEeecCCceeeEEEeccCcccccEEEEccCCCC--EEEEEEC---CCCCEEEEeCcHHHHHHHHHH
Confidence 88999999999999 555566778899999999876544444 3444442 124577888877777666655
Q ss_pred HHHH
Q psy8450 514 YMSL 517 (525)
Q Consensus 514 Yi~~ 517 (525)
....
T Consensus 142 ~~~~ 145 (199)
T PF06017_consen 142 AYKK 145 (199)
T ss_pred HHHH
Confidence 5543
No 103
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=59.79 E-value=20 Score=27.46 Aligned_cols=41 Identities=10% Similarity=0.191 Sum_probs=33.5
Q ss_pred EecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 225 YRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 225 v~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
+...+|....+.+++..|++++-+.|+++.|++.. ..-|+.
T Consensus 5 v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~----~q~L~~ 45 (76)
T cd01803 5 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPD----QQRLIF 45 (76)
T ss_pred EEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHH----HeEEEE
Confidence 45668888889999999999999999999998653 456663
No 104
>COG4687 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.48 E-value=28 Score=29.19 Aligned_cols=71 Identities=15% Similarity=0.259 Sum_probs=49.5
Q ss_pred eEEEEEccCceEEeecCccceEEEeecccceeccccccCCC--ceEEEEEecccccceEEEEecccHHHHHHHHHHHHH
Q psy8450 440 QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESG--TLYLEMKCGNLFQQRVARIQTDQAHEIARLIRQYMS 516 (525)
Q Consensus 440 ~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~--~~~~~i~~g~~~~~~~~~~~t~qa~ei~~LI~~Yi~ 516 (525)
.++| +..|+-|++..+-+.-..+||++|....... +.+ ..-|.|.+ .++.++.|-+.++.+|-..|+.|+.
T Consensus 26 kili--GDkgfEFYn~~nv~k~iqipWs~i~~v~vsv-s~KK~~~~f~i~t---d~~gk~~FaSkdsg~iLk~ir~yvg 98 (122)
T COG4687 26 KILI--GDKGFEFYNDRNVEKFIQIPWSEINEVDVSV-SLKKWGRQFSIFT---DTQGKVRFASKDSGKILKKIREYVG 98 (122)
T ss_pred eEEE--cccceeecCCCChhheeEecHHHhheeheee-hhhhhcceEEEEE---cCCceEEEEeCCchhHHHHHHHHhC
Confidence 4444 4788899988877788899999997543221 111 12244432 2357899999999999999999973
No 105
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=58.71 E-value=40 Score=26.43 Aligned_cols=45 Identities=22% Similarity=0.281 Sum_probs=34.2
Q ss_pred EEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEc
Q psy8450 224 LYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVE 272 (525)
Q Consensus 224 iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~ 272 (525)
.+.||||+...-.+.+..|+++|.+-|....+... ..|.|.-..+
T Consensus 8 ~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~----~~f~L~t~~P 52 (80)
T smart00166 8 QIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGN----DPFTLNSPFP 52 (80)
T ss_pred EEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCC----CCEEEEeCCC
Confidence 36899999888899999999999999955544333 4588866443
No 106
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=58.64 E-value=39 Score=26.92 Aligned_cols=61 Identities=8% Similarity=0.116 Sum_probs=44.2
Q ss_pred ecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhhhhH
Q psy8450 226 RLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTT 291 (525)
Q Consensus 226 ~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl~ 291 (525)
.+ ||-...+.+.++.+..++.++|++++++.+. ..|.|-..++++ -+..|..+.=+-+.+.
T Consensus 6 ~~-~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~---~~f~LkY~Ddeg-d~v~ltsd~DL~eai~ 66 (82)
T cd06407 6 TY-GEEKIRFRLPPSWGFTELKQEIAKRFKLDDM---SAFDLKYLDDDE-EWVLLTCDADLEECID 66 (82)
T ss_pred Ee-CCeEEEEEcCCCCCHHHHHHHHHHHhCCCCC---CeeEEEEECCCC-CeEEeecHHHHHHHHH
Confidence 35 5556788999999999999999999999764 589999887543 2445555544444443
No 107
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=58.12 E-value=22 Score=26.84 Aligned_cols=41 Identities=10% Similarity=0.124 Sum_probs=33.3
Q ss_pred EecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 225 YRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 225 v~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
+..++|....+.+++..|++++-+.|+++.|++. ...-|+.
T Consensus 5 vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~----~~q~L~~ 45 (72)
T cd01809 5 VKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPV----EQQRLIY 45 (72)
T ss_pred EEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCH----HHeEEEE
Confidence 4556787788999999999999999999999864 3456654
No 108
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=57.63 E-value=26 Score=25.54 Aligned_cols=40 Identities=10% Similarity=0.204 Sum_probs=31.5
Q ss_pred EecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 225 YRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 225 v~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
+..++ ....+.+++.+|++++.+.|+.+.|++.. ...|..
T Consensus 5 vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~----~~~L~~ 44 (64)
T smart00213 5 VKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVE----QQRLIY 44 (64)
T ss_pred EEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHH----HEEEEE
Confidence 35556 46778999999999999999999999653 466654
No 109
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=56.61 E-value=23 Score=29.52 Aligned_cols=54 Identities=6% Similarity=0.033 Sum_probs=36.5
Q ss_pred HcCCCceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHH----hCCCCCCCCcceEEEEE
Q psy8450 215 SAGRNSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQL----INVNNDLEMEEFSLYCI 270 (525)
Q Consensus 215 ~~~~~~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~----lgL~~~~~~~~FsL~~~ 270 (525)
.....+.+.|+...++....+.++..+|+.+++.++..+ ++..+. .+.|.|-+.
T Consensus 12 ~~~~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~--~~dyvLKV~ 69 (106)
T PF00794_consen 12 LQNNKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDP--EDDYVLKVC 69 (106)
T ss_dssp SSSSEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHH--HHGEEEEET
T ss_pred CCCCeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCccc--ccCEEEEec
Confidence 344556666544447778889999999999999999887 233332 137888775
No 110
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=56.52 E-value=33 Score=27.47 Aligned_cols=45 Identities=13% Similarity=0.224 Sum_probs=36.3
Q ss_pred ceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 220 SKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 220 ~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
+.+. ++-++|....+.|.++++++.|.+.+|++.|++.. .+.|+.
T Consensus 12 i~I~-v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~----~~rf~f 56 (87)
T cd01763 12 INLK-VKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMN----SVRFLF 56 (87)
T ss_pred EEEE-EECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCcc----ceEEEE
Confidence 4444 45668888999999999999999999999999753 466655
No 111
>KOG2378|consensus
Probab=56.23 E-value=38 Score=35.58 Aligned_cols=55 Identities=16% Similarity=0.288 Sum_probs=42.1
Q ss_pred EEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEc-CCceeecCCCcch
Q psy8450 224 LYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVE-GDAFTMPLAKEEY 285 (525)
Q Consensus 224 iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~-~~~~~~~L~~~~~ 285 (525)
.+++||-++.++.+.-+++|+|++..+++++|-.. +-.|..+.+ |+. ..|+|++.
T Consensus 239 ~vy~~Dhsy~tl~~~vs~svqEI~~~va~k~~~se-----el~LV~v~s~GEk--v~lqPnd~ 294 (573)
T KOG2378|consen 239 IVYLPDHSYVTLRIRVSASVQEILEAVAEKLGYSE-----ELILVKVSSSGEK--VILQPNDR 294 (573)
T ss_pred EEEecCceEEEEEeechhHHHHHHHHHHHHhcccc-----ceeEEEEccCCce--eeecCCcc
Confidence 45699999999999999999999999999998775 466666653 332 23566553
No 112
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=55.52 E-value=28 Score=26.77 Aligned_cols=42 Identities=10% Similarity=0.031 Sum_probs=32.0
Q ss_pred ecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 226 RLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 226 ~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
...+|....+++++.+|++++-+.|+++.|+..+. +...|..
T Consensus 6 k~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~--~~q~L~~ 47 (77)
T cd01805 6 KTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPP--EQQKLIY 47 (77)
T ss_pred EeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCCh--hHeEEEE
Confidence 44577778899999999999999999999983111 3455554
No 113
>cd01271 Fe65_C Fe65 C-terminal Phosphotyrosine-binding (PTB) domain. Fe65 C-terminal Phosphotyrosine-binding (PTB) domain. Fe65 is an amyloid beta A4 precursor (APP) protein-binding. It contains an N-terminal WW domain followed by two PTB domains. The C-terminal PTB domain is responsible for APP binding. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=55.18 E-value=1.1e+02 Score=26.33 Aligned_cols=81 Identities=12% Similarity=0.041 Sum_probs=53.2
Q ss_pred CCeEEEEEccCceEEeecCc-cceEEEeecccceeccccccCCCceEEEEEecccccc--eEEEEecccHHHHHHHHHHH
Q psy8450 438 GDQQILALNKHGVHFLNLLT-HETISSVPYGDVISTRKVRAESGTLYLEMKCGNLFQQ--RVARIQTDQAHEIARLIRQY 514 (525)
Q Consensus 438 ~~~~~LaIn~~Gi~~l~~~t-k~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~~~~--~~~~~~t~qa~ei~~LI~~Y 514 (525)
+.++.+.|.+.||.+++.++ ++++...+..-|+-++. .-+....-|-+..|+ ..- ..|.++. .|.+++.-|.+=
T Consensus 39 w~~V~vsvaps~v~v~~~~~~~~~l~ecrVr~lSF~Gv-gKd~k~fafI~~~~~-~~f~ChVF~ce~-~A~~ls~av~aA 115 (124)
T cd01271 39 WLSVNVNVAPSTITVISEKNEEEVLVECRVRYLSFLGI-GKDVHTCAFIMDTGN-QRFECHVFWCEP-NAGNVSKAVEAA 115 (124)
T ss_pred CceEEEEeCCceEEEEccCccceeeeeeeEEEeccccC-CCCccEEEEEEecCC-CcEEEEEEEecC-ChHHHHHHHHHH
Confidence 34899999999999999886 57999998887754443 223333334445443 111 3444543 466999988877
Q ss_pred HHHHhhh
Q psy8450 515 MSLDRQK 521 (525)
Q Consensus 515 i~~~~~~ 521 (525)
+.+..++
T Consensus 116 c~lrYQk 122 (124)
T cd01271 116 CKLRYQK 122 (124)
T ss_pred HHHHHhh
Confidence 7766554
No 114
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=54.04 E-value=49 Score=25.64 Aligned_cols=44 Identities=23% Similarity=0.143 Sum_probs=34.0
Q ss_pred EEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEc
Q psy8450 224 LYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVE 272 (525)
Q Consensus 224 iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~ 272 (525)
.+.||||+.....+.+..|+++|-+-|-...+- . ..|.|.-.-+
T Consensus 6 ~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~--~---~~f~L~t~~P 49 (77)
T cd01767 6 QIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP--A---EPFTLMTSFP 49 (77)
T ss_pred EEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC--C---CCEEEEeCCC
Confidence 368999998888899999999999888766433 2 4688876433
No 115
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=53.85 E-value=27 Score=27.41 Aligned_cols=40 Identities=20% Similarity=0.324 Sum_probs=31.9
Q ss_pred EecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEE
Q psy8450 225 YRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLY 268 (525)
Q Consensus 225 v~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~ 268 (525)
+...+|....+++++..|++|+-++|+++.|+... -..|.
T Consensus 7 Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~----~qrL~ 46 (80)
T cd01792 7 VKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAF----QQRLA 46 (80)
T ss_pred EEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHH----HEEEE
Confidence 34557777888999999999999999999998653 45664
No 116
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=52.05 E-value=1.1e+02 Score=23.61 Aligned_cols=64 Identities=13% Similarity=0.171 Sum_probs=45.5
Q ss_pred EecCCCcEEEEEeC-CcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhhhhHHHh
Q psy8450 225 YRLPGGSETVINTK-STTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELH 294 (525)
Q Consensus 225 v~lpdg~~~~v~v~-s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl~~~e 294 (525)
+++.|+. ..+.+. +.++-.++.+.|++++++.. ..|.+...++++. +..|..++-+-+++....
T Consensus 5 ~~~~~~~-~~~~~~~~~~s~~~L~~~i~~~~~~~~----~~~~l~y~D~e~d-~v~l~sd~Dl~~a~~~~~ 69 (81)
T cd05992 5 VKYGGEI-RRFVVVSRSISFEDLRSKIAEKFGLDA----VSFKLKYPDEDGD-LVTISSDEDLEEAIEEAR 69 (81)
T ss_pred EEecCCC-EEEEEecCCCCHHHHHHHHHHHhCCCC----CcEEEEeeCCCCC-EEEeCCHHHHHHHHHHHh
Confidence 3465554 667777 89999999999999999975 3689988875443 456666665555555443
No 117
>PF08000 bPH_1: Bacterial PH domain; InterPro: IPR012544 This family contains many bacterial hypothetical proteins.; PDB: 3DCX_E 3HSA_C 3B77_D.
Probab=51.29 E-value=1.2e+02 Score=26.23 Aligned_cols=70 Identities=14% Similarity=0.230 Sum_probs=42.4
Q ss_pred eEEEEEccCceEEeecCccceEEEeecccceeccccccCCC----ceEEEEEecccccceEEEEec-ccHHHHHHHHHHH
Q psy8450 440 QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESG----TLYLEMKCGNLFQQRVARIQT-DQAHEIARLIRQY 514 (525)
Q Consensus 440 ~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~----~~~~~i~~g~~~~~~~~~~~t-~qa~ei~~LI~~Y 514 (525)
.-++-++.+|+. ..|..+.++||+.|.++..- +.| ..-+.+.+++...+..+.|.- ....++..+|+.|
T Consensus 49 kRlI~vD~QG~T----GkK~~~~siPY~~I~~~siE--TAG~~DlD~Elki~i~~~~~~i~~~f~k~~di~~i~k~L~~~ 122 (124)
T PF08000_consen 49 KRLILVDKQGIT----GKKVEYKSIPYSSITHFSIE--TAGTFDLDSELKIWISGQGFPIEFEFKKKTDIYEIYKALAEY 122 (124)
T ss_dssp SEEEEEEEESSS----SSEEEEEEEEGGGEEEEEEE--ECSSTTSEEEEEEEETTESSEEEEEEGTTSHHHHHHHHHHHH
T ss_pred ChheEEecccCc----cceEEEEEEehhhccEEEEE--eCCcccCcccEEEEECCCcEEEEEecCCCCCHHHHHHHHHHH
Confidence 455556666552 34677789999999987542 233 234555566543333444542 3577888888877
Q ss_pred H
Q psy8450 515 M 515 (525)
Q Consensus 515 i 515 (525)
+
T Consensus 123 v 123 (124)
T PF08000_consen 123 V 123 (124)
T ss_dssp H
T ss_pred h
Confidence 5
No 118
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=50.58 E-value=44 Score=27.83 Aligned_cols=41 Identities=10% Similarity=0.032 Sum_probs=34.2
Q ss_pred EecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 225 YRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 225 v~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
+...+|....++|+++.|+.++-+.|+++-|++. ....|+.
T Consensus 32 Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~----~~QrLi~ 72 (103)
T cd01802 32 IETLTGTCFELRVSPFETVISVKAKIQRLEGIPV----AQQHLIW 72 (103)
T ss_pred EEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCh----HHEEEEE
Confidence 4566787788999999999999999999999866 3577764
No 119
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=47.94 E-value=38 Score=24.96 Aligned_cols=33 Identities=9% Similarity=0.115 Sum_probs=28.3
Q ss_pred cCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCC
Q psy8450 227 LPGGSETVINTKSTTVVEDICIEMCQLINVNND 259 (525)
Q Consensus 227 lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~ 259 (525)
..+|....+.+++.+|++++-+.|+++.|+...
T Consensus 4 ~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~ 36 (69)
T cd01769 4 TLTGKTFELEVSPDDTVAELKAKIAAKEGVPPE 36 (69)
T ss_pred ccCCCEEEEEECCCChHHHHHHHHHHHHCcChH
Confidence 346777789999999999999999999998664
No 120
>PF14470 bPH_3: Bacterial PH domain
Probab=46.88 E-value=97 Score=24.68 Aligned_cols=67 Identities=16% Similarity=0.239 Sum_probs=42.7
Q ss_pred eEEEEEccCceEEeecCc--cceEEEeecccceeccccccCCCceEEEEEecccccceEEEEe---cccHHHHHHHH
Q psy8450 440 QQILALNKHGVHFLNLLT--HETISSVPYGDVISTRKVRAESGTLYLEMKCGNLFQQRVARIQ---TDQAHEIARLI 511 (525)
Q Consensus 440 ~~~LaIn~~Gi~~l~~~t--k~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~~~~~~~~~~---t~qa~ei~~LI 511 (525)
+-++++..+-|.++.... +.....+||++|.++..... -....+.+..++ ..+.+. ..++.++.+.|
T Consensus 23 ~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g-~~~~~i~i~~~~----~~~~i~~i~k~~~~~~~~~i 94 (96)
T PF14470_consen 23 PGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKG-ILGGKITIETNG----EKIKIDNIQKGDVKEFYEYI 94 (96)
T ss_pred eeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEcc-ccccEEEEEECC----EEEEEEEcCHHHHHHHHHHH
Confidence 778888888899987762 57789999999999764311 111335555543 344444 44566665554
No 121
>KOG1892|consensus
Probab=46.83 E-value=32 Score=39.46 Aligned_cols=68 Identities=19% Similarity=0.237 Sum_probs=48.2
Q ss_pred EEEEeCCcchHHHHHHHHHHHhC----CCCCCCCcceEEEEEEcCCceeecCCCcchhhhhhHHHhhcCCcEEEEEe
Q psy8450 233 TVINTKSTTVVEDICIEMCQLIN----VNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHKNQQVFYLIFC 305 (525)
Q Consensus 233 ~~v~v~s~tt~~ev~~~i~~~lg----L~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl~~~e~~~~~~~l~fr 305 (525)
+.+.|.|..|+.||++.+++++- +-+. ..|+||++..++. |-|..+|+-+=|--.|.+.+.+-+|++|
T Consensus 57 KCiRVsStATt~dVidtL~EKFrPDmrMLS~---p~YsLyEVH~nGE--RrL~~dEKPLvVQLnWhkDDREGRFlLK 128 (1629)
T KOG1892|consen 57 KCIRVSSTATTQDVIDTLAEKFRPDMRMLSS---PKYSLYEVHVNGE--RRLDIDEKPLVVQLNWHKDDREGRFLLK 128 (1629)
T ss_pred heeEecccccHHHHHHHHHHHhCcchhhhcC---CCceeeeeecCcc--cccCcccCceEEEeccccccccceeeee
Confidence 34778899999999999999852 2232 4799999985543 6676777655555567766666666665
No 122
>cd00153 RalGDS_RA Ubiquitin domain of RalGDS-like factor (RLF) and related proteins. This CD represents the C-terminal Ras-associating (RA) domain of three closely related guanine-nucleotide exchange factors (GEF's), Ral guanine nucleotide dissociation stimulator (RalGDS), RalGDS-like (RGL), and RalGDS-like factor (RLF). The RalGDS proteins are downstream effectors of the Ras-related protein Ral, providing a mechanism for Ral activation by extracellular signals. The RA domain is structurally similar to ubiquitin and exists in a number of other signalling proteins including AF6, rasfadin, SNX27, CYR1, and STE50.
Probab=46.78 E-value=67 Score=25.70 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=37.1
Q ss_pred CcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcC
Q psy8450 230 GSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEG 273 (525)
Q Consensus 230 g~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~ 273 (525)
..++.+-+.+...+-.|++....+-++.+.+ .+.|.|+...++
T Consensus 16 n~YKSIlltsqDktP~VI~ral~Khnl~~~~-~~~Y~L~Q~Lp~ 58 (87)
T cd00153 16 NLYKSILLTSQDKAPQVIRRAMEKHNLESEV-AEDYELVQVLPG 58 (87)
T ss_pred ceEEEEEEecCCcCHHHHHHHHHHhCCCcCC-ccceEEEEEcCC
Confidence 4578899999999999999999999999874 389999988763
No 123
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=46.62 E-value=90 Score=24.90 Aligned_cols=47 Identities=19% Similarity=0.246 Sum_probs=35.5
Q ss_pred CceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEE
Q psy8450 219 NSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCI 270 (525)
Q Consensus 219 ~~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~ 270 (525)
++....+.||||+...-.+....+.++|..-|..+ |... ..|.|.-.
T Consensus 4 ~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~~-g~~~----~~f~L~t~ 50 (82)
T cd01773 4 PKARLMLRYPDGKREQIALPEQAKLLALVRHVQSK-GYPN----ERFELLTN 50 (82)
T ss_pred CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCC----CCEEEecC
Confidence 44555579999999988899999999998887773 4422 56888643
No 124
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=42.65 E-value=41 Score=26.06 Aligned_cols=31 Identities=29% Similarity=0.275 Sum_probs=27.7
Q ss_pred CCcEEEEEeCCcchHHHHHHHHHHHhCCCCC
Q psy8450 229 GGSETVINTKSTTVVEDICIEMCQLINVNND 259 (525)
Q Consensus 229 dg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~ 259 (525)
+|....+++++..|+.|+-+.|++..|++..
T Consensus 8 ~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~ 38 (74)
T cd01813 8 GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPE 38 (74)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCCHH
Confidence 6666789999999999999999999998764
No 125
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=42.58 E-value=59 Score=24.39 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=32.0
Q ss_pred EecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 225 YRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 225 v~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
+.. +|....+.+++..|+.++-+.|+..-|++.. ...|+.
T Consensus 5 vk~-~g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~----~q~L~~ 44 (71)
T cd01812 5 VKH-GGESHDLSISSQATFGDLKKMLAPVTGVEPR----DQKLIF 44 (71)
T ss_pred EEE-CCEEEEEEECCCCcHHHHHHHHHHhhCCChH----HeEEee
Confidence 344 3666789999999999999999999998763 566664
No 126
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=41.61 E-value=43 Score=26.07 Aligned_cols=36 Identities=3% Similarity=-0.103 Sum_probs=29.7
Q ss_pred CCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEE
Q psy8450 228 PGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSL 267 (525)
Q Consensus 228 pdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL 267 (525)
..|....++|+++.|++++-+.|..+.|++.. ..-|
T Consensus 10 ~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~----~QrL 45 (75)
T cd01799 10 SHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPA----VQRW 45 (75)
T ss_pred cCCCeEEEEECCCCcHHHHHHHHHHHHCcCHH----HEEE
Confidence 45556789999999999999999999999764 4555
No 127
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=41.06 E-value=44 Score=25.86 Aligned_cols=37 Identities=8% Similarity=0.065 Sum_probs=30.8
Q ss_pred CCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 229 GGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 229 dg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
+|....++++++.|+.++-+.|....|++.. ...|..
T Consensus 6 ~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~----~q~L~~ 42 (76)
T cd01800 6 NGQMLNFTLQLSDPVSVLKVKIHEETGMPAG----KQKLQY 42 (76)
T ss_pred CCeEEEEEECCCCcHHHHHHHHHHHHCCCHH----HEEEEE
Confidence 5667889999999999999999999998763 466664
No 128
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=39.90 E-value=63 Score=24.50 Aligned_cols=39 Identities=18% Similarity=0.266 Sum_probs=30.3
Q ss_pred ecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 226 RLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 226 ~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
..++|. ..+++++..|++++-+.|+++.|+.. +.+.|..
T Consensus 6 k~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~----~~~~Li~ 44 (71)
T cd01808 6 KTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQ----EQLVLIF 44 (71)
T ss_pred EcCCCC-EEEEECCCChHHHHHHHHHHHhCCCH----HHEEEEE
Confidence 344665 48999999999999999999999754 4566643
No 129
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=39.82 E-value=50 Score=28.08 Aligned_cols=49 Identities=8% Similarity=0.219 Sum_probs=34.6
Q ss_pred EEEEccCceEEeecCc-cceEEEeecccceecccccc-----CCCceEEEEEecc
Q psy8450 442 ILALNKHGVHFLNLLT-HETISSVPYGDVISTRKVRA-----ESGTLYLEMKCGN 490 (525)
Q Consensus 442 ~LaIn~~Gi~~l~~~t-k~~l~~~~~~~I~s~~~~~~-----~~~~~~~~i~~g~ 490 (525)
.--+..++|+++..++ .+....+|++||.+...... .....+|+|.+++
T Consensus 20 YWrLDsK~Itlf~~e~~skyyKeIPLsEIl~V~~~~~~~~~~~~~~hcFEi~T~~ 74 (117)
T cd01239 20 YWRLDSKAITLYQEESGSRYYKEIPLAEILSVSSNNGDSVLAKHPPHCFEIRTTT 74 (117)
T ss_pred EEEecCCeEEEEEcCCCCeeeEEeehHHheEEeccCCCcCCCCCCCcEEEEEecC
Confidence 3445788898876666 57889999999999864321 1234788887765
No 130
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=39.36 E-value=1.2e+02 Score=23.81 Aligned_cols=41 Identities=15% Similarity=0.088 Sum_probs=32.2
Q ss_pred EecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEE
Q psy8450 225 YRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCI 270 (525)
Q Consensus 225 v~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~ 270 (525)
+.||||......+.+.+|.++|.+-|....+- . ..|.|.-.
T Consensus 9 iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~--~---~~f~L~t~ 49 (79)
T cd01772 9 IRLLDGTTLKQTFKAREQLAAVRLFVELNTGN--G---GPFTLMTP 49 (79)
T ss_pred EECCCCCEEEEEeCCCChHHHHHHHHHHcCCC--C---CCEEEEeC
Confidence 68999998888899999999999999876432 2 45887643
No 131
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=38.70 E-value=1.4e+02 Score=23.60 Aligned_cols=49 Identities=12% Similarity=0.023 Sum_probs=35.3
Q ss_pred CceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEc
Q psy8450 219 NSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVE 272 (525)
Q Consensus 219 ~~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~ 272 (525)
+.....+.||||+...-.+.++.+.++|..-|..+ |-.. ..|.|.-.-+
T Consensus 3 ~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~----~~f~L~t~fP 51 (80)
T cd01771 3 PISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPI----DEYKLLSSWP 51 (80)
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCC----CCEEEecCCC
Confidence 34444578999998888899999999999888654 4322 4688864433
No 132
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=38.41 E-value=94 Score=23.99 Aligned_cols=31 Identities=6% Similarity=0.124 Sum_probs=26.9
Q ss_pred CCcEEEEEeCCcchHHHHHHHHHHHhCCCCC
Q psy8450 229 GGSETVINTKSTTVVEDICIEMCQLINVNND 259 (525)
Q Consensus 229 dg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~ 259 (525)
.|....+++++..|++|+-+.|+++-|++..
T Consensus 10 ~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~ 40 (73)
T cd01791 10 LGKKVRVKCNPDDTIGDLKKLIAAQTGTRPE 40 (73)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHhCCChH
Confidence 5677788999999999999999999887764
No 133
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=36.18 E-value=62 Score=24.83 Aligned_cols=36 Identities=14% Similarity=0.214 Sum_probs=29.4
Q ss_pred CcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 230 GSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 230 g~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
+....++|+++.|++++-..|+.+-|++.. ...|+.
T Consensus 8 ~~~~~l~v~~~~tV~~lK~~i~~~~gip~~----~q~Li~ 43 (74)
T cd01793 8 QNTHTLEVTGQETVSDIKAHVAGLEGIDVE----DQVLLL 43 (74)
T ss_pred CCEEEEEECCcCcHHHHHHHHHhhhCCCHH----HEEEEE
Confidence 355788999999999999999999998663 456654
No 134
>KOG0821|consensus
Probab=35.84 E-value=65 Score=30.75 Aligned_cols=57 Identities=12% Similarity=0.260 Sum_probs=37.2
Q ss_pred cCCCCCccCCC-CchHHHHHHHHHHHHhhc--CCCCCCCCcchhHHHHHHHHhhhCCCCC
Q psy8450 67 VPISEPLLKLE-PPLAEIAVECFECIMRFM--GDLPTTPDLTEVKCVYTILMHCHTHEPL 123 (525)
Q Consensus 67 ~pi~~pLl~~~-~~~~~~A~~~F~~il~~m--gd~~~~~~~~~~~~~~~il~~~~~~~~L 123 (525)
.|+++|++..+ +-+.+..-++|..=++|+ |-...-.+....++...++++|--.+.|
T Consensus 226 ~P~K~P~~~~~F~lvEkV~R~vF~~RQKY~~rGl~TL~PeE~r~E~~~~Ll~~~~idpT~ 285 (326)
T KOG0821|consen 226 TPLKQPKIEQPFKLVEKVVRNVFQFRQKYCHRGLRTLFPEEQRLESTGRLLELADIDPTL 285 (326)
T ss_pred eecCCccccCCHHHHHHHHHHHHHHHHHHHHccccccCCHHHHHHHHHHHHHHhcCCCcc
Confidence 49999999998 667788888999999999 3332222222344555555555444433
No 135
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=35.54 E-value=42 Score=24.79 Aligned_cols=29 Identities=21% Similarity=0.255 Sum_probs=22.5
Q ss_pred EecCCCcEEEEEeCCcchHHHHHHHHHHHhC
Q psy8450 225 YRLPGGSETVINTKSTTVVEDICIEMCQLIN 255 (525)
Q Consensus 225 v~lpdg~~~~v~v~s~tt~~ev~~~i~~~lg 255 (525)
+++|||.... +...+|+.|+...|...++
T Consensus 3 v~lpdG~~~~--~~~g~T~~d~A~~I~~~l~ 31 (60)
T PF02824_consen 3 VYLPDGSIKE--LPEGSTVLDVAYSIHSSLA 31 (60)
T ss_dssp EEETTSCEEE--EETTBBHHHHHHHHSHHHH
T ss_pred EECCCCCeee--CCCCCCHHHHHHHHCHHHH
Confidence 3569999654 7777889999988887754
No 136
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=35.08 E-value=1.6e+02 Score=23.86 Aligned_cols=63 Identities=14% Similarity=0.231 Sum_probs=47.1
Q ss_pred ecCCCcEEEEEeCC-----cchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhhhhHHH
Q psy8450 226 RLPGGSETVINTKS-----TTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTEL 293 (525)
Q Consensus 226 ~lpdg~~~~v~v~s-----~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl~~~ 293 (525)
.+ +|..+.|.+.. ..+..++.+.|++.+++... ..|.|...++++. +..|..++-+.+.+...
T Consensus 6 ~y-~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~---~~~~l~Y~Dedgd-~V~l~~D~DL~~a~~~~ 73 (91)
T cd06398 6 KY-GGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPD---ADLSLTYTDEDGD-VVTLVDDNDLTDAIQYF 73 (91)
T ss_pred Ee-CCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCC---CcEEEEEECCCCC-EEEEccHHHHHHHHHHH
Confidence 45 66667788885 58999999999999999875 5899988775443 45666766666766653
No 137
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=33.31 E-value=1.5e+02 Score=23.50 Aligned_cols=60 Identities=12% Similarity=0.104 Sum_probs=40.1
Q ss_pred EecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhhhhH
Q psy8450 225 YRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTT 291 (525)
Q Consensus 225 v~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl~ 291 (525)
|||-+ ..++.+.+...-+++.+.|+++|+|+. +.--|.....+..-..++ +++-+=++.+
T Consensus 7 V~f~~--tIaIrvp~~~~y~~L~~ki~~kLkl~~----e~i~LsYkde~s~~~v~l-~d~dle~aws 66 (80)
T cd06406 7 VHFKY--TVAIQVARGLSYATLLQKISSKLELPA----EHITLSYKSEASGEDVIL-SDTNMEDVWS 66 (80)
T ss_pred EEEEE--EEEEEcCCCCCHHHHHHHHHHHhCCCc----hhcEEEeccCCCCCccCc-ChHHHHHHHH
Confidence 56644 478899999999999999999999984 346676665432222345 4444444444
No 138
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=31.24 E-value=1.2e+02 Score=23.73 Aligned_cols=41 Identities=27% Similarity=0.349 Sum_probs=31.2
Q ss_pred EecCCCcE-EEEE-eCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 225 YRLPGGSE-TVIN-TKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 225 v~lpdg~~-~~v~-v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
+...+|.. ..+. +++..|++++-+.|+++.|++. ....|+.
T Consensus 5 vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~----~~QrLi~ 47 (78)
T cd01797 5 VRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEP----ECQRLFY 47 (78)
T ss_pred EEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCH----HHeEEEe
Confidence 34556664 4674 7899999999999999999876 3577765
No 139
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=30.88 E-value=1.2e+02 Score=28.88 Aligned_cols=76 Identities=16% Similarity=0.204 Sum_probs=37.2
Q ss_pred CHHHHHHHHcCCCceeeEEecCCCc----EEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCC
Q psy8450 207 SVEEVTAVSAGRNSKRQLYRLPGGS----ETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAK 282 (525)
Q Consensus 207 s~~Ei~a~~~~~~~~~~iv~lpdg~----~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~ 282 (525)
+..|++.. +++ .++.++++. ...+-+....|++|+++.+++++++.+.. ..-.-|+...++ .+...+.+
T Consensus 11 ~l~ElE~k---k~~--kv~w~~~~~~~~~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~-~~~lrl~ev~~~-ki~~~~~~ 83 (213)
T PF14533_consen 11 PLKELENK---KQF--KVTWLNDGLKEEQEYELLVPKTGTVSDLLEELQKKVGFSEEG-TGKLRLWEVSNH-KIYKILSE 83 (213)
T ss_dssp -HHHHHSB-----E--EEEEE-TTS-EE-EEEE--BTT-BHHHHHHHHHTT----TT-----EEEEEEETT-EEEEEE-T
T ss_pred CHHHHhCc---eEE--EEEEECCCCcceeEEEEEECCCCCHHHHHHHHHHHcCCCcCC-cCcEEEEEeECC-EEEeecCC
Confidence 34455533 333 444554442 23466788999999999999999997642 245667766554 34455555
Q ss_pred cchhhhh
Q psy8450 283 EEYILDV 289 (525)
Q Consensus 283 ~~~i~Dv 289 (525)
++.+-++
T Consensus 84 d~~i~~l 90 (213)
T PF14533_consen 84 DEPISSL 90 (213)
T ss_dssp TSBGGGS
T ss_pred CCchhhc
Confidence 5554433
No 140
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=30.70 E-value=2e+02 Score=22.99 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=31.4
Q ss_pred EEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEE
Q psy8450 224 LYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCI 270 (525)
Q Consensus 224 iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~ 270 (525)
.+.||||+...-.+.++.|+++|..-|... +- .+ ..|.|.-.
T Consensus 8 ~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~-~~---~~f~L~t~ 49 (85)
T cd01774 8 VFKLPNGTRVERRFLFTQSLRVIHDFLFSL-KE-TP---EKFQIVTN 49 (85)
T ss_pred EEECCCCCEEEEEeCCCCcHHHHHHHHHhC-CC-CC---CcEEEecC
Confidence 368999998888899999999999998532 22 12 56887653
No 141
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=29.43 E-value=1.6e+02 Score=26.76 Aligned_cols=38 Identities=16% Similarity=0.174 Sum_probs=30.2
Q ss_pred cEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEE
Q psy8450 231 SETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIV 271 (525)
Q Consensus 231 ~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~ 271 (525)
....+.+.+.+|+.|+...|...+++... .-+.|+...
T Consensus 15 ~tl~~~lp~~ttv~dL~~~l~~~~~~~~~---~~~~L~~~~ 52 (162)
T PF13019_consen 15 PTLSLSLPSTTTVSDLKDRLSERLPIPSS---SQLYLTTNS 52 (162)
T ss_pred CeEEeeCCCCCcHHHHHHHHHhhcCCCcc---ceeEEEEeC
Confidence 45778889999999999999999999886 235555543
No 142
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=28.87 E-value=2.6e+02 Score=21.99 Aligned_cols=60 Identities=12% Similarity=0.164 Sum_probs=38.6
Q ss_pred eEEEEEccCc--eEEeecCccce-EEEeecccceeccccccCCCceEEEEEeccc--ccceEEEE
Q psy8450 440 QQILALNKHG--VHFLNLLTHET-ISSVPYGDVISTRKVRAESGTLYLEMKCGNL--FQQRVARI 499 (525)
Q Consensus 440 ~~~LaIn~~G--i~~l~~~tk~~-l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~--~~~~~~~~ 499 (525)
+-.|.|..++ +.......... -.+++|.+|.+....++++....+.|-..+. ..+.+|.|
T Consensus 13 ~G~L~l~~d~~~~~W~~~~~~~~~~v~i~~~~I~~lq~Sp~~s~Kv~Lki~~~~~~~~~~~~f~F 77 (79)
T PF08567_consen 13 DGTLTLTEDRKPLEWTPKASDGPSTVSIPLNDIKNLQQSPEGSPKVMLKIVLKDDSSEESKTFVF 77 (79)
T ss_dssp EEEEEEETTCSSEEEEECCSSSSSEEEEETTTEEEEEE--TTSSTEEEEEEETTSC---CCCEEE
T ss_pred CcEEEEecCCceEEEeecCCCCCceEEEEHHHhhhhccCCCCCcceEEEEEEecCCcccceEEEE
Confidence 4677888888 77776544444 4899999999877665555457777765443 13456666
No 143
>cd01204 IRS_PTB Insulin receptor substrate (IRS) Phosphotyrosine-binding domain(PTB). Insulin receptor substrate (IRS) Phosphotyrosine-binding domain(PTB). This domain has a PH-like fold and is found in insulin receptor substrate molecules. IRS molecules have an N-terminal PH domain , which is followed by an IRS-like PTB domain. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs in the insulin receptor, IGF-I receptor and the IL-4 receptor.
Probab=28.84 E-value=3.4e+02 Score=22.50 Aligned_cols=72 Identities=14% Similarity=0.185 Sum_probs=47.5
Q ss_pred eEEEEEccCceEEeecCccceEEEeecccceeccccccCCCceEEEEEec--ccccceEEEEecccH---HHHHHHHHHH
Q psy8450 440 QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCG--NLFQQRVARIQTDQA---HEIARLIRQY 514 (525)
Q Consensus 440 ~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g--~~~~~~~~~~~t~qa---~ei~~LI~~Y 514 (525)
..-|.+..+-+.++.-++..+-..+.+..|.+.+. ++. +|-|..| ....+..+++++.++ ..|-..|-+=
T Consensus 23 ~yrlcLt~~~l~lv~l~~~~~~v~l~L~~IRRCGH---s~~--~Ff~E~GRsa~tG~GElWMq~dD~~vAqnmHe~iL~a 97 (104)
T cd01204 23 VYRLCLTSKTLSFVKLNSEVASVELLLMNIRRCGH---SEN--FFFIEVGRSAVTGPGELWMQVDDAVVAQNMHETILEA 97 (104)
T ss_pred eEEEEEccceeEEEEcCCCCccEEEeeeeeeeccC---ccc--EEEEEecccccCCCCcEEEEcchHHHHHHHHHHHHHH
Confidence 55677778888887777666778889989888765 333 4445555 344467899999874 4555544443
Q ss_pred HH
Q psy8450 515 MS 516 (525)
Q Consensus 515 i~ 516 (525)
++
T Consensus 98 m~ 99 (104)
T cd01204 98 MK 99 (104)
T ss_pred HH
Confidence 33
No 144
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=28.33 E-value=1.4e+02 Score=23.55 Aligned_cols=58 Identities=12% Similarity=0.090 Sum_probs=36.4
Q ss_pred EecCCCcEEEEEe--CCcchHHHHHHHHHHHhC-CCCCCCCcceEEEEEEcCCceeecCCCcchhhhhhH
Q psy8450 225 YRLPGGSETVINT--KSTTVVEDICIEMCQLIN-VNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTT 291 (525)
Q Consensus 225 v~lpdg~~~~v~v--~s~tt~~ev~~~i~~~lg-L~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl~ 291 (525)
+.-++|....+.+ +++.||+|+-+.|+...+ ...+ +.--|-. .|+ .|++++-+-|.++
T Consensus 6 IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~---~~QrLIy--~GK----iLkD~~tL~~~~~ 66 (79)
T cd01790 6 IKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLE---QDQRLIY--SGK----LLPDHLKLRDVLR 66 (79)
T ss_pred EECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCCh---hHeEEEE--cCe----eccchhhHHHHhh
Confidence 4567888755555 899999999999998875 2222 2233333 243 3556656656553
No 145
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=28.10 E-value=2.7e+02 Score=21.10 Aligned_cols=71 Identities=14% Similarity=0.208 Sum_probs=46.3
Q ss_pred eEEEEEccCceEEeecCccceEE--EeecccceeccccccC-CCceEEEEEecccccceEEEEecccHHHHHHHHH
Q psy8450 440 QQILALNKHGVHFLNLLTHETIS--SVPYGDVISTRKVRAE-SGTLYLEMKCGNLFQQRVARIQTDQAHEIARLIR 512 (525)
Q Consensus 440 ~~~LaIn~~Gi~~l~~~tk~~l~--~~~~~~I~s~~~~~~~-~~~~~~~i~~g~~~~~~~~~~~t~qa~ei~~LI~ 512 (525)
+.++.+...++.+++++...... .+++..+. +...... .....|.+..++. ....+.|.++...+...-+.
T Consensus 21 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~l~~~~-v~~~~~~~~~~~~F~i~~~~~-~~~~~~~~~~~~~~~~~W~~ 94 (99)
T cd00900 21 RRWFFLFDDGLLLYKSDDKKEIKPGSIPLSEIS-VEEDPDGSDDPNCFAIVTKDR-GRRVFVFQADSEEEAQEWVE 94 (99)
T ss_pred eeEEEEECCEEEEEEcCCCCcCCCCEEEccceE-EEECCCCCCCCceEEEECCCC-CcEEEEEEcCCHHHHHHHHH
Confidence 89999999999999988765554 68888876 5443221 1236677765421 24667777766666655443
No 146
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=27.89 E-value=3.2e+02 Score=23.16 Aligned_cols=50 Identities=12% Similarity=0.132 Sum_probs=35.0
Q ss_pred EEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhhhhHH
Q psy8450 234 VINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTE 292 (525)
Q Consensus 234 ~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl~~ 292 (525)
-+-|....|+.+++..|-++|+|... =|||+..++ .. ...+..+.|+-.+
T Consensus 44 KflVp~~~tv~~f~~~irk~l~l~~~-----~slfl~Vn~-~~---p~~~~~~~~lY~~ 93 (112)
T cd01611 44 KYLVPSDLTVGQFVYIIRKRIQLRPE-----KALFLFVNN-SL---PPTSATMSQLYEE 93 (112)
T ss_pred eEEecCCCCHHHHHHHHHHHhCCCcc-----ceEEEEECC-cc---CCchhHHHHHHHH
Confidence 45688999999999999999998875 466666654 21 2455555555443
No 147
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=27.34 E-value=2.1e+02 Score=22.87 Aligned_cols=44 Identities=23% Similarity=0.422 Sum_probs=37.0
Q ss_pred EecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEc
Q psy8450 225 YRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVE 272 (525)
Q Consensus 225 v~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~ 272 (525)
+++ +|-.....++.+++-.++++++.....+... ..|.+.-.++
T Consensus 5 ~~y-~gdi~it~~d~~~s~e~L~~~v~~~c~~~~~---q~ft~kw~DE 48 (83)
T cd06404 5 AAY-NGDIMITSIDPSISLEELCNEVRDMCRFHND---QPFTLKWIDE 48 (83)
T ss_pred EEe-cCcEEEEEcCCCcCHHHHHHHHHHHhCCCCC---CcEEEEEECC
Confidence 345 5556788999999999999999999999876 6899998875
No 148
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=24.06 E-value=4.1e+02 Score=21.85 Aligned_cols=63 Identities=11% Similarity=0.308 Sum_probs=44.4
Q ss_pred ecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCce--eecCCCcchhhhhhHHH
Q psy8450 226 RLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAF--TMPLAKEEYILDVTTEL 293 (525)
Q Consensus 226 ~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~--~~~L~~~~~i~Dvl~~~ 293 (525)
.+-||..+.+.|+...+-.|+...+++.++.... +.|....+++.. ...+..++-+...+.+.
T Consensus 18 ~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-----~~lky~Lp~edld~Lisv~~DeDl~~M~~e~ 82 (97)
T cd06410 18 RYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-----VTLKYQLPDEDLDALISVSNDEDLKNMMEEY 82 (97)
T ss_pred EEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-----eEEEEEcCCCCcceeEEecCcHHHHHHHHhh
Confidence 3568888999999999999999999999988752 677666544332 23455566554444443
No 149
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=23.32 E-value=4.4e+02 Score=21.97 Aligned_cols=76 Identities=9% Similarity=0.133 Sum_probs=43.9
Q ss_pred HHHHHHHcCCCceeeEEe--cCCCc-----EEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCC
Q psy8450 209 EEVTAVSAGRNSKRQLYR--LPGGS-----ETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLA 281 (525)
Q Consensus 209 ~Ei~a~~~~~~~~~~iv~--lpdg~-----~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~ 281 (525)
.|.+.+....|-.+.|+. .++.. ..-+-|....|+.+++..|-++|.|... -+||+..++ .+ ..
T Consensus 4 ~e~~~ir~kyP~~IPVIvEr~~~s~lp~ldk~KfLvp~~~tv~qf~~~ir~rl~l~~~-----~alfl~Vn~-~l---p~ 74 (104)
T PF02991_consen 4 EESERIREKYPDKIPVIVERYPKSKLPDLDKKKFLVPKDLTVGQFVYIIRKRLQLSPE-----QALFLFVNN-TL---PS 74 (104)
T ss_dssp HHHHHHHHHSTTEEEEEEEE-TTSSS---SSSEEEEETTSBHHHHHHHHHHHTT--TT-----S-EEEEBTT-BE---SS
T ss_pred HHHHHHHHHCCCccEEEEEEccCCChhhcCccEEEEcCCCchhhHHHHhhhhhcCCCC-----ceEEEEEcC-cc---cc
Confidence 466677776776666554 22211 1123467788999999999999999875 355555544 22 23
Q ss_pred CcchhhhhhHHH
Q psy8450 282 KEEYILDVTTEL 293 (525)
Q Consensus 282 ~~~~i~Dvl~~~ 293 (525)
.+.-+.++-.+.
T Consensus 75 ~s~tm~elY~~~ 86 (104)
T PF02991_consen 75 TSSTMGELYEKY 86 (104)
T ss_dssp TTSBHHHHHHHH
T ss_pred hhhHHHHHHHHh
Confidence 445555555443
No 150
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=23.31 E-value=1.5e+02 Score=25.03 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=23.2
Q ss_pred EecCCCc-EEEEEeCCcchHHHHHHHHHHH
Q psy8450 225 YRLPGGS-ETVINTKSTTVVEDICIEMCQL 253 (525)
Q Consensus 225 v~lpdg~-~~~v~v~s~tt~~ev~~~i~~~ 253 (525)
+.|.||+ ...+.+++++||.+|-+.|...
T Consensus 7 f~l~~G~d~~~~~~~~~~TV~~lKe~i~~~ 36 (111)
T PF13881_consen 7 FRLADGKDIGPFRFDPSTTVADLKERIWAE 36 (111)
T ss_dssp EEETTS-EEEEEEE-TTSBHHHHHHHHHHS
T ss_pred EEEeCCCcccccccCccChHHHHHHHHHHH
Confidence 4677999 7789999999999999999874
No 151
>KOG2320|consensus
Probab=22.66 E-value=77 Score=34.56 Aligned_cols=55 Identities=18% Similarity=0.398 Sum_probs=42.3
Q ss_pred cEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhhhh
Q psy8450 231 SETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVT 290 (525)
Q Consensus 231 ~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl 290 (525)
+..++.+.+.++++.+++..+.+.|+.++ +.|+||+..++ .+..|.++.+-.|+-
T Consensus 557 ~~aT~~~~p~~~t~~lc~lCa~kf~v~~p---~~~~Lfl~~e~--~~s~L~~~~lPh~i~ 611 (651)
T KOG2320|consen 557 TKATLASRPSAQTQILCRLCAEKFGVTSP---QEHGLFLFVEG--WDSQLADDALPHDIK 611 (651)
T ss_pred ccccccCCCccchhhhhHhhHHhhcCCCc---cccCeEEEecC--ccccCCccccceecc
Confidence 44566777888999999999999999998 78999998753 456666766655543
No 152
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=20.10 E-value=75 Score=25.43 Aligned_cols=35 Identities=14% Similarity=0.311 Sum_probs=23.9
Q ss_pred EEeCCcchHHHHHHHHHHH--hCCCCCCC-CcceEEEE
Q psy8450 235 INTKSTTVVEDICIEMCQL--INVNNDLE-MEEFSLYC 269 (525)
Q Consensus 235 v~v~s~tt~~ev~~~i~~~--lgL~~~~~-~~~FsL~~ 269 (525)
+++++++|.+|+++.++++ +.++.+.- ..+=.||+
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm 38 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYM 38 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEE
Confidence 5789999999999999998 78887631 23444554
Done!