Query psy8450
Match_columns 525
No_of_seqs 259 out of 1131
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 19:11:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8450.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8450hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pvl_A Myosin VIIA isoform 1; 100.0 1E-82 3.5E-87 696.3 50.0 458 10-521 28-572 (655)
2 3au4_A Myosin-X; protein-prote 100.0 6.3E-80 2.1E-84 670.4 45.5 433 59-522 47-541 (555)
3 4dxa_B KREV interaction trappe 100.0 2.7E-41 9.4E-46 342.3 28.8 279 221-524 6-321 (322)
4 3ivf_A Talin-1; FERM domain, c 100.0 1.1E-40 3.8E-45 344.7 28.8 288 202-519 68-371 (371)
5 1h4r_A Merlin; FERM, neurofibr 100.0 2.9E-40 1E-44 334.0 29.6 294 204-522 5-312 (314)
6 2al6_A Focal adhesion kinase 1 100.0 6E-39 2.1E-43 331.4 31.1 285 223-522 10-325 (375)
7 1ef1_A Moesin; membrane, FERM 100.0 4E-39 1.4E-43 322.8 28.7 279 220-522 2-292 (294)
8 2i1j_A Moesin; FERM, coiled-co 100.0 2.1E-37 7.1E-42 333.9 28.6 281 217-521 2-294 (575)
9 3qij_A Protein 4.1; cytoskelet 100.0 1.4E-36 4.8E-41 303.7 29.6 266 218-517 16-291 (296)
10 4eku_A Protein-tyrosine kinase 100.0 1.1E-36 3.9E-41 313.7 27.4 299 209-522 14-342 (392)
11 4f7g_A Talin-1; alpha-helix bu 100.0 4.1E-32 1.4E-36 260.5 19.7 186 316-522 24-220 (222)
12 1mix_A Talin; focal adhesion, 100.0 9.8E-31 3.3E-35 248.2 17.2 183 315-518 12-205 (206)
13 2j0j_A Focal adhesion kinase 1 99.9 1.1E-21 3.8E-26 217.0 30.1 282 225-520 12-323 (656)
14 1wgr_A Growth factor receptor- 98.9 2.3E-09 7.8E-14 87.1 7.6 88 219-311 9-96 (100)
15 4gmv_A RAS-associated and plec 98.3 1.1E-06 3.6E-11 85.7 8.2 83 220-307 32-114 (281)
16 3hk0_A Growth factor receptor- 97.9 2.4E-05 8.2E-10 75.2 7.7 80 221-307 10-89 (256)
17 2kc2_A Talin-1, F1; FERM, adhe 97.7 0.00015 5.1E-09 61.5 9.0 45 224-271 15-59 (128)
18 3tca_A Amyloid beta A4 precurs 97.5 0.00023 7.7E-09 69.9 9.4 83 220-307 35-117 (291)
19 2cs4_A Protein C12ORF2; GTP bi 97.5 0.00016 5.3E-09 57.6 6.3 75 225-307 12-87 (95)
20 1wxa_A Afadin, AF-6 protein; R 97.2 0.0015 5E-08 54.8 9.2 80 227-307 20-108 (116)
21 3ddc_B RAS association domain- 97.1 0.0013 4.4E-08 57.5 7.3 79 225-305 81-161 (163)
22 2uwq_A Apoptosis-stimulating o 97.0 0.0011 3.6E-08 51.7 5.7 77 220-306 7-85 (86)
23 1j0w_A Downstream of tyrosine 96.8 0.018 6.2E-07 46.9 11.4 78 439-521 21-101 (103)
24 2v76_A Docking protein 1; alte 96.6 0.017 5.7E-07 47.4 10.4 76 440-520 24-105 (107)
25 1p5t_A DOK1, docking protein 1 96.5 0.035 1.2E-06 46.8 11.8 77 440-521 26-108 (127)
26 2dlw_A Docking protein 2, isof 96.4 0.013 4.6E-07 48.4 8.5 77 439-520 28-107 (113)
27 2c5l_C Phosphoinositide-specif 96.3 0.027 9.2E-07 46.7 9.8 85 219-307 7-107 (117)
28 1xr0_B FGFR signalling adaptor 94.7 0.39 1.3E-05 40.4 11.3 82 430-518 12-101 (129)
29 1hbk_A ACBP, acyl-COA binding 94.7 0.15 5.3E-06 40.2 8.4 63 349-429 23-89 (89)
30 3d8d_A Amyloid beta A4 precurs 94.6 0.27 9.3E-06 42.4 10.4 80 440-520 56-139 (148)
31 2bye_A Phospholipase C, epsilo 94.3 0.14 4.8E-06 41.7 7.4 89 218-307 8-108 (110)
32 3epy_A Acyl-COA-binding domain 94.1 0.14 4.6E-06 40.5 6.8 63 349-428 23-88 (89)
33 1st7_A ACBP, acyl-COA-binding 94.0 0.081 2.8E-06 41.6 5.3 63 349-428 20-85 (86)
34 2kuq_A Fibroblast growth facto 93.9 0.48 1.7E-05 40.8 10.3 81 430-517 19-107 (153)
35 3so6_A LDL receptor adaptor pr 93.8 0.52 1.8E-05 40.2 10.9 80 440-519 45-127 (137)
36 2cb8_A Acyl-COA-binding protei 93.7 0.14 4.8E-06 40.3 6.3 62 349-428 21-86 (87)
37 1ntv_A Disabled homolog 1; bet 93.6 0.3 1E-05 42.7 9.0 77 440-518 62-139 (152)
38 2kup_A Fibroblast growth facto 93.6 0.41 1.4E-05 41.0 9.4 80 430-516 19-106 (146)
39 2al3_A TUG long isoform; TUG U 93.5 0.11 3.8E-06 40.9 5.3 48 217-269 7-54 (90)
40 2cop_A Acyl-coenzyme A binding 93.3 0.32 1.1E-05 39.9 8.0 65 349-430 27-94 (109)
41 2ej8_A DCC-interacting protein 92.6 0.63 2.1E-05 41.0 9.6 79 439-519 57-143 (160)
42 2cy5_A Epidermal growth factor 92.2 1.1 3.8E-05 38.3 10.1 81 440-520 50-135 (140)
43 2ela_A Adapter protein contain 92.1 0.75 2.5E-05 41.2 9.6 77 440-518 71-155 (175)
44 3f0w_A NUMB-R, NUMB-like prote 91.9 1.4 4.8E-05 39.0 11.1 82 439-520 78-161 (168)
45 2cqu_A Peroxisomal D3,D2-enoyl 91.8 0.52 1.8E-05 39.0 7.5 63 349-429 35-101 (116)
46 4dx8_A Integrin beta-1-binding 91.6 1.4 4.8E-05 37.8 10.0 81 440-520 63-150 (154)
47 1p3r_A Disabled homolog 2; PTB 91.6 0.78 2.7E-05 40.4 9.0 76 440-517 61-137 (160)
48 3ml4_A Protein DOK-7; tyrosine 91.6 1.2 4E-05 41.1 10.2 82 430-516 116-205 (224)
49 1aqc_A X11; PTB domain; 2.30A 90.5 1.2 4.3E-05 39.6 9.3 75 439-518 64-160 (172)
50 2wh5_A Acyl-COA-binding domain 89.2 1.1 3.8E-05 36.4 7.1 58 349-424 31-91 (106)
51 2lbb_A Acyl COA binding protei 89.2 0.2 6.8E-06 40.1 2.6 63 349-428 30-95 (96)
52 4dbb_A Amyloid beta A4 precurs 89.0 3 0.0001 36.6 10.5 77 440-519 54-133 (162)
53 3flv_A Acyl-COA-binding domain 88.7 1.5 5.1E-05 36.4 7.6 59 349-424 47-107 (119)
54 1wxm_A A-RAF proto-oncogene se 86.3 2.9 9.9E-05 32.3 7.4 46 222-271 9-54 (86)
55 2l05_A Serine/threonine-protei 86.2 3.8 0.00013 32.2 8.1 47 222-272 19-65 (95)
56 3fp5_A Acyl-COA binding protei 86.1 2.6 8.7E-05 34.3 7.5 58 349-423 27-86 (106)
57 1n3h_A SHC transforming protei 84.6 1.3 4.4E-05 40.7 5.7 71 440-511 121-194 (207)
58 1wgy_A RAP guanine nucleotide 84.0 2.6 8.8E-05 34.0 6.5 76 220-308 10-87 (104)
59 3dxe_A Amyloid beta A4 protein 83.8 7.1 0.00024 33.3 9.7 82 438-521 45-127 (140)
60 3dbh_I NEDD8; cell cycle, acti 81.2 3.7 0.00013 31.5 6.5 41 218-259 11-51 (88)
61 1c1y_B Proto-onkogene serine/t 80.9 2.8 9.5E-05 31.7 5.2 43 225-271 6-48 (77)
62 2dhz_A RAP guanine nucleotide 80.7 5.3 0.00018 33.0 7.3 80 220-308 10-93 (120)
63 3ivf_A Talin-1; FERM domain, c 80.7 1.5 5.1E-05 44.1 5.0 63 220-284 4-66 (371)
64 1qqg_A IRS-1, insulin receptor 79.7 6.2 0.00021 37.6 8.7 72 440-516 179-255 (264)
65 3suz_A Amyloid beta A4 precurs 79.5 9.9 0.00034 38.3 10.7 76 440-519 67-163 (388)
66 3mtn_B UBA80, ubcep1, ubiquiti 78.5 3.4 0.00012 31.3 5.4 46 219-269 3-48 (85)
67 3plu_A Ubiquitin-like modifier 78.1 3.6 0.00012 32.5 5.3 37 223-259 24-60 (93)
68 3ny5_A Serine/threonine-protei 75.8 9.2 0.00031 30.1 6.9 47 220-271 14-60 (96)
69 3n3k_B Ubiquitin; hydrolase, p 74.2 3.5 0.00012 31.3 4.4 45 220-269 4-48 (85)
70 1rrb_A RAF-1 RBD, RAF proto-on 73.8 7.7 0.00026 31.1 6.1 43 225-271 23-65 (107)
71 1wgu_A APBB2, amyloid beta (A4 73.4 21 0.00072 30.2 9.4 76 438-515 53-130 (136)
72 3a9j_A Ubiquitin; protein comp 72.7 5.7 0.00019 29.2 5.2 41 225-269 5-45 (76)
73 1ndd_A NEDD8, protein (ubiquit 72.6 6.1 0.00021 29.0 5.3 41 225-269 5-45 (76)
74 3phx_B Ubiquitin-like protein 72.5 6.7 0.00023 29.3 5.5 46 219-269 4-49 (79)
75 2pjh_A Protein NPL4, nuclear p 71.4 2.3 7.8E-05 32.6 2.6 47 219-271 4-50 (80)
76 1wyw_B Ubiquitin-like protein 69.0 5.8 0.0002 31.3 4.6 46 219-269 21-66 (97)
77 4hcn_B Polyubiquitin, ubiquiti 68.5 7.8 0.00027 30.6 5.3 41 218-259 21-61 (98)
78 3v6c_B Ubiquitin; structural g 67.4 10 0.00035 29.3 5.7 40 219-259 17-56 (91)
79 2dzi_A Ubiquitin-like protein 66.8 12 0.0004 27.9 5.9 45 220-269 8-52 (81)
80 1yx5_B Ubiquitin; proteasome, 65.7 9 0.00031 30.1 5.2 41 225-269 5-45 (98)
81 1sif_A Ubiquitin; hydrophobic 64.8 11 0.00037 29.0 5.4 45 220-269 10-54 (88)
82 1wvh_A Tensin, tensin1; beta s 64.5 33 0.0011 28.9 8.5 76 440-515 41-133 (134)
83 3hsa_A Pleckstrin homology dom 64.5 35 0.0012 28.4 8.6 70 440-515 50-124 (126)
84 1v2y_A 3300001G02RIK protein; 64.2 7 0.00024 31.6 4.2 41 217-258 5-45 (105)
85 2uyz_B Small ubiquitin-related 64.2 8.8 0.0003 28.6 4.6 45 220-269 4-48 (79)
86 1lfd_A Ralgds; RAL, effector i 64.2 27 0.00092 26.9 7.1 70 231-307 17-87 (87)
87 2ysz_A Amyloid beta A4 precurs 63.9 19 0.00064 32.2 7.3 81 438-521 53-136 (185)
88 2dyq_A Amyloid beta A4 precurs 63.5 43 0.0015 28.6 9.2 82 438-521 53-140 (144)
89 3k9o_B Ubiquitin, UBB+1; E2-25 63.4 11 0.00037 29.4 5.2 44 221-269 3-46 (96)
90 4fbj_B NEDD8; effector-HOST ta 62.2 12 0.00041 28.7 5.2 34 226-259 6-39 (88)
91 2yt0_A Amyloid beta A4 protein 61.3 35 0.0012 30.2 8.6 73 438-512 99-173 (176)
92 2bwf_A Ubiquitin-like protein 61.3 14 0.00047 27.2 5.3 37 229-269 12-48 (77)
93 1wju_A NEDD8 ultimate buster-1 61.2 11 0.00038 30.1 4.8 35 225-259 20-58 (100)
94 1wh3_A 59 kDa 2'-5'-oligoadeny 60.9 17 0.00059 27.5 5.9 45 220-269 8-52 (87)
95 1uh6_A Ubiquitin-like 5; beta- 60.7 14 0.00046 29.6 5.2 35 225-259 33-67 (100)
96 4dwf_A HLA-B-associated transc 60.3 14 0.00047 28.4 5.2 39 220-259 6-44 (90)
97 2daf_A FLJ35834 protein; hypot 59.9 14 0.00048 30.4 5.2 41 219-259 15-55 (118)
98 1rax_A Protein (RA-domain of R 59.5 36 0.0012 27.6 7.4 72 230-308 41-113 (115)
99 4eew_A Large proline-rich prot 59.4 13 0.00046 28.3 5.0 39 220-259 18-56 (88)
100 2kzr_A Ubiquitin thioesterase 58.8 9.2 0.00031 29.3 3.9 35 222-258 3-38 (86)
101 2kk8_A Uncharacterized protein 58.6 19 0.00063 27.5 5.6 45 220-269 11-55 (84)
102 1we6_A Splicing factor, putati 56.3 24 0.00081 28.4 6.2 50 208-259 17-70 (111)
103 2faz_A Ubiquitin-like containi 55.6 22 0.00077 26.2 5.6 45 220-269 3-49 (78)
104 1rlf_A RLF, RLF-RBD; signal tr 54.8 25 0.00084 27.3 5.5 73 228-307 17-89 (90)
105 3vdz_A Ubiquitin-40S ribosomal 54.7 19 0.00065 29.1 5.3 45 220-269 36-80 (111)
106 1ttn_A DC-UBP, dendritic cell- 54.2 20 0.00067 28.7 5.3 41 218-259 22-62 (106)
107 1wy8_A NP95-like ring finger p 53.6 26 0.0009 26.6 5.8 45 220-269 8-54 (89)
108 2klc_A Ubiquilin-1; ubiquitin- 53.5 21 0.00073 28.2 5.4 46 218-269 24-69 (101)
109 2ojr_A Ubiquitin; lanthide-bin 52.8 22 0.00075 28.6 5.4 45 220-269 36-80 (111)
110 2hj8_A Interferon-induced 17 k 52.5 23 0.0008 27.0 5.3 39 220-259 5-43 (88)
111 2dzk_A UBX domain-containing p 52.4 40 0.0014 27.1 7.0 44 223-270 16-59 (109)
112 2dzm_A FAS-associated factor 1 51.5 26 0.00089 27.9 5.5 38 222-260 11-48 (100)
113 1v5o_A 1700011N24RIK protein; 50.7 27 0.00093 27.6 5.6 40 220-259 8-50 (102)
114 2kd0_A LRR repeats and ubiquit 49.9 22 0.00075 27.1 4.7 32 228-259 19-50 (85)
115 1we7_A SF3A1 protein; structur 49.2 35 0.0012 27.6 6.2 56 208-269 15-80 (115)
116 1vd2_A Protein kinase C, IOTA 48.7 60 0.0021 25.2 7.0 49 219-272 6-54 (89)
117 3u30_A Ubiquitin, linear DI-ub 48.2 24 0.00083 30.8 5.4 41 218-259 19-59 (172)
118 3ulb_A Target of rapamycin com 47.9 1.1E+02 0.0037 25.1 8.7 70 440-511 29-106 (121)
119 1ef5_A RGL; RAS-binding domain 46.5 28 0.00095 27.7 4.7 72 229-307 30-102 (103)
120 1wf9_A NPL4 family protein; be 46.2 31 0.0011 27.5 5.3 38 220-259 8-46 (107)
121 2kdi_A Ubiquitin, vacuolar pro 45.9 28 0.00095 28.2 5.0 40 226-269 15-54 (114)
122 3kh0_A Ralgds, ralgef, RAL gua 45.7 78 0.0027 26.5 7.5 72 231-308 39-110 (140)
123 1wm3_A Ubiquitin-like protein 45.4 32 0.0011 25.2 4.9 34 226-259 7-40 (72)
124 3m62_B UV excision repair prot 45.0 24 0.00082 28.2 4.4 35 225-259 6-40 (106)
125 2v1y_A Phosphatidylinositol-4, 44.4 1.1E+02 0.0037 24.7 8.1 64 223-289 22-92 (108)
126 1wx8_A Riken cDNA 4931431F19; 44.3 27 0.00093 27.0 4.6 38 220-259 18-55 (96)
127 3b08_A Polyubiquitin-C, ubiqui 42.4 32 0.0011 28.9 5.2 35 225-259 5-39 (152)
128 2io0_B Small ubiquitin-related 41.8 31 0.0011 26.8 4.4 46 219-269 5-50 (91)
129 3a4r_A Nfatc2-interacting prot 41.5 54 0.0019 24.5 5.7 40 219-259 7-47 (79)
130 2wyq_A HHR23A, UV excision rep 41.0 44 0.0015 24.9 5.3 45 220-269 6-53 (85)
131 4a3p_A Ubiquitin carboxyl-term 40.9 88 0.003 28.4 8.2 67 219-288 127-194 (217)
132 2io1_B Small ubiquitin-related 40.6 32 0.0011 26.9 4.4 39 220-259 8-46 (94)
133 2kan_A Uncharacterized protein 40.6 48 0.0017 25.7 5.5 44 220-269 16-59 (94)
134 2l7r_A Ubiquitin-like protein 40.0 38 0.0013 26.2 4.8 36 230-269 27-62 (93)
135 4efo_A Serine/threonine-protei 39.2 32 0.0011 27.1 4.1 48 210-259 5-52 (94)
136 3qx1_A FAS-associated factor 1 38.6 90 0.0031 23.5 6.7 46 219-269 6-51 (84)
137 1j8c_A Ubiquitin-like protein 38.5 46 0.0016 27.5 5.3 45 219-269 32-76 (125)
138 3hqc_A Tensin-like C1 domain-c 38.1 1.6E+02 0.0055 25.3 8.7 75 440-515 53-144 (157)
139 1uel_A HHR23B, UV excision rep 37.5 51 0.0017 25.4 5.2 40 226-269 6-48 (95)
140 1wz0_A Ubiquitin-like protein 36.2 65 0.0022 25.7 5.6 40 219-259 24-63 (104)
141 3q3f_A Ribonuclease/ubiquitin 35.9 48 0.0016 29.7 5.3 35 225-259 110-144 (189)
142 3b1l_X E3 ubiquitin-protein li 41.2 8.1 0.00028 28.5 0.0 34 226-259 6-39 (76)
143 3rt3_B Ubiquitin-like protein 34.6 60 0.0021 27.6 5.7 41 225-269 86-126 (159)
144 4dbg_A Ranbp-type and C3HC4-ty 34.5 75 0.0026 25.4 5.7 41 219-259 22-65 (105)
145 3l0w_B Monoubiquitinated proli 34.3 50 0.0017 28.8 5.2 34 226-259 6-39 (169)
146 2d07_B Ubiquitin-like protein 34.3 61 0.0021 25.1 5.1 40 219-259 17-56 (93)
147 1wj4_A KIAA0794 protein; UBX d 34.2 84 0.0029 25.9 6.2 46 220-270 43-88 (124)
148 1v5t_A 8430435I17RIK protein; 34.0 59 0.002 24.9 5.0 38 220-259 8-46 (90)
149 3cf6_E RAP guanine nucleotide 34.0 68 0.0023 34.8 7.2 43 225-272 357-399 (694)
150 1yqb_A Ubiquilin 3; structural 32.7 63 0.0022 25.3 5.0 44 220-269 23-66 (100)
151 3m63_B Ubiquitin domain-contai 32.2 23 0.0008 28.0 2.4 31 229-259 36-66 (101)
152 3b08_A Polyubiquitin-C, ubiqui 32.0 52 0.0018 27.5 4.8 40 226-269 82-121 (152)
153 3rt3_B Ubiquitin-like protein 31.7 52 0.0018 28.0 4.7 35 225-259 7-41 (159)
154 2k8h_A Small ubiquitin protein 31.4 72 0.0025 25.7 5.2 40 219-259 26-65 (110)
155 1wgd_A Homocysteine-responsive 31.4 70 0.0024 24.5 5.1 39 220-259 8-50 (93)
156 2eke_C Ubiquitin-like protein 30.8 52 0.0018 26.4 4.2 44 220-269 32-75 (106)
157 1v86_A DNA segment, CHR 7, way 30.3 73 0.0025 24.6 5.0 38 220-259 18-55 (95)
158 1s3s_G P47 protein; AAA ATPase 30.0 99 0.0034 25.5 6.0 47 219-269 51-98 (127)
159 1wx7_A Ubiquilin 3; ubiquitin- 28.8 79 0.0027 24.9 5.1 44 220-269 18-61 (106)
160 1k8r_B Protein kinase BYR2; si 28.7 1.1E+02 0.0037 23.9 5.3 42 227-273 7-48 (110)
161 2kvr_A Ubiquitin carboxyl-term 28.4 1.9E+02 0.0064 24.0 7.4 36 232-271 57-92 (130)
162 3voq_A Target of rapamycin com 28.3 2.5E+02 0.0086 23.1 10.5 64 440-503 31-104 (125)
163 2coa_A Protein kinase C, D2 ty 27.2 83 0.0028 26.0 4.8 51 440-490 26-83 (125)
164 3ec8_A Putative uncharacterize 25.9 1.6E+02 0.0056 25.5 6.6 64 206-271 23-89 (166)
165 2fnj_B Transcription elongatio 25.7 77 0.0026 25.9 4.4 50 229-288 10-59 (118)
166 3rui_B Autophagy-related prote 25.6 1.6E+02 0.0055 24.0 6.4 74 210-292 19-99 (118)
167 2kdb_A Homocysteine-responsive 25.2 1E+02 0.0035 24.2 5.0 39 219-258 23-64 (99)
168 3h9d_A ATG8, microtubule-assoc 25.1 1.7E+02 0.0057 23.9 6.4 74 210-292 20-100 (119)
169 1wxv_A BAG-family molecular ch 24.8 1.2E+02 0.004 23.0 5.3 38 220-259 8-50 (92)
170 1wgg_A Ubiquitin carboxyl-term 24.5 1.3E+02 0.0044 23.3 5.5 34 225-259 12-46 (96)
171 3jyu_A Ubiquitin carboxyl-term 23.8 1.6E+02 0.0054 27.0 6.8 52 234-288 155-206 (231)
172 1pfj_A TFIIH basal transcripti 23.4 2.9E+02 0.0098 22.1 8.0 78 440-518 21-103 (108)
173 3u5e_m 60S ribosomal protein L 22.8 18 0.00061 30.1 0.0 34 226-259 6-39 (128)
174 3m95_A Autophagy related prote 22.5 1.8E+02 0.0061 24.0 6.1 50 234-292 56-105 (125)
175 3u30_A Ubiquitin, linear DI-ub 22.2 1.2E+02 0.0041 26.1 5.4 34 226-259 102-135 (172)
176 3kyd_D Small ubiquitin-related 22.0 1E+02 0.0035 25.1 4.4 46 219-269 40-85 (115)
177 2kjr_A CG11242; UBL, ubiquitin 22.0 2.7E+02 0.0094 21.4 8.0 41 226-270 21-63 (95)
178 1y8x_B Ubiquitin-activating en 20.3 51 0.0018 26.1 2.2 29 231-259 5-35 (98)
179 2zjd_A Microtubule-associated 20.2 2E+02 0.0068 23.9 6.0 49 234-291 56-105 (130)
180 2lxa_A Ubiquitin-like protein 20.0 75 0.0026 24.3 3.1 40 226-269 7-49 (87)
No 1
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=100.00 E-value=1e-82 Score=696.29 Aligned_cols=458 Identities=21% Similarity=0.328 Sum_probs=390.8
Q ss_pred ecCCCCCCCHHHHHHHhcCCccccccccCccccccccCCCCCCchhhcccccccccccCCCCCccCCC-CchHHHHHHHH
Q psy8450 10 QIEDDGKHSLLQFAMHHFRQFENLKTATGELTTGTGHKKSSSDWTWREQLDLVKFTCVPISEPLLKLE-PPLAEIAVECF 88 (525)
Q Consensus 10 ~~~~~~~~~l~~fa~~~F~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~l~~~~~pi~~pLl~~~-~~~~~~A~~~F 88 (525)
+..|.++|++.+||..||..+.. | .|++.||++|||.++ +.....|+.+|
T Consensus 28 ~~~d~~~~~f~kfa~~yf~~~~~----------------------~-------~~~~~~l~~pll~~~~~~d~~~al~~~ 78 (655)
T 3pvl_A 28 DEEDLSEYKFAKFAATYFQGTTT----------------------H-------SYTRRPLKQPLLYHDDEGDQLAALAVW 78 (655)
T ss_dssp -CCCCTTCCHHHHHHHHBCCSSC----------------------S-------SCCCSCCSSCSBCCSSHHHHHHHHHHH
T ss_pred CccchhhCCHHHHHHHHhCcCCc----------------------c-------cccccccccccccCCChhhHHHHHHHH
Confidence 35677899999999999997631 1 578999999999997 45557999999
Q ss_pred HHHHhhcCCCCCCCC------------------------------------------------------------cchhH
Q psy8450 89 ECIMRFMGDLPTTPD------------------------------------------------------------LTEVK 108 (525)
Q Consensus 89 ~~il~~mgd~~~~~~------------------------------------------------------------~~~~~ 108 (525)
+.|||||||.|.++- .++.+
T Consensus 79 ~~ilrfmgd~~ep~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (655)
T 3pvl_A 79 ITILRFMGDLPEPKYHTAMSDGSEKIPVMTKIYETLGKKTYKRELQALQGEGEVTKRLNDGESTVQGNSMLEDRPTSNLE 158 (655)
T ss_dssp HHHHHHHTSSCCCCCC--------CCCHHHHHHTTTTCCCCHHHHHTTC----------------CCCTTSCSSCCCHHH
T ss_pred HHHHHHhccCCcccccccccccccCChhHHHHHHhhcccccccchhhhhhhhhhhhhcccccccccccccccccccchhH
Confidence 999999999654320 12346
Q ss_pred HHHHHHHhhhCCCCCchHHHHHHHHHhcCCCC-hhhhHHHHHHHHhhcccCCCcchHHHHHHHHhhhhhcccccchhHHH
Q psy8450 109 CVYTILMHCHTHEPLRDEVYCQLMKQTTSNKT-ESCQRGWRLLSIVAAYFTCSDTLRPFLLKYLETAAYDKRRAFHGTAS 187 (525)
Q Consensus 109 ~~~~il~~~~~~~~LrDEiy~Qi~KQ~t~n~~-~~~~r~W~Ll~l~~~~f~PS~~l~~~l~~~l~~~~~~~~~~~~~~a~ 187 (525)
.+++|++.|+.+|+||||||||||||||+||+ +++.|||+||++|+++||||+.|.|||.+||++.. .++|.
T Consensus 159 ~~~~i~~~~~~~~~LrDEiycQl~kQ~t~np~~~s~~rgW~Ll~l~~~~f~Ps~~~~~yl~~~l~~~~-------~~~a~ 231 (655)
T 3pvl_A 159 KLHFIIGNGILRPALRDEIYCQISKQLTHNPSKSSYARGWILVSLCVGCFAPSEKFVKYLRNFIHGGP-------PGYAP 231 (655)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHCCCCTTTHHHHHHHHHTSC-------TTTHH
T ss_pred HHHHHHHHHhcChhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHcCc-------HHHHH
Confidence 68999999999999999999999999999999 99999999999999999999999999999998732 37999
Q ss_pred HHHHHHHhhhhcCCCCCCCCHHHHHHHHcCCCceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEE
Q psy8450 188 VCLQNLRKTLRYGGRKNVPSVEEVTAVSAGRNSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSL 267 (525)
Q Consensus 188 ~c~~~L~r~~~~g~R~~~Ps~~Ei~a~~~~~~~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL 267 (525)
+|+++|+||.++|+|++|||.+||+|+.+++++.+.| +|+||+...+.|+++||++|+++.||.++||.+. +||||
T Consensus 232 ~c~~~L~rt~~~g~R~~~Ps~~Ei~Ai~~~~~i~~~V-~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~---~~FgL 307 (655)
T 3pvl_A 232 YCEERLRRTFVNGTRTQPPSWLELQATKSKKPIMLPV-TFMDGTTKTLLTDSATTARELCNALADKISLKDR---FGFSL 307 (655)
T ss_dssp HHHHHHHHHHHHCCCSSCCCHHHHHHHHHTCCEEEEE-EETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSC---TTEEE
T ss_pred HHHHHHHHhhcCCCCCcCCCHHHHHHHHcCCceEEEE-EecCCceEEEEEccCCcHHHHHHHHHHHcCCccc---cccee
Confidence 9999999999999999999999999999999998885 6889999999999999999999999999999997 79999
Q ss_pred EEEEcCCceeecCCCcchhhhhhHHHhh---------cCCcEEEEEeeeccccCC-cccchhhHHhhhhhhchhhhhccc
Q psy8450 268 YCIVEGDAFTMPLAKEEYILDVTTELHK---------NQQVFYLIFCRSVWYFPL-RLDCQLYVQVLFNQIAPDYLEGLL 337 (525)
Q Consensus 268 ~~~~~~~~~~~~L~~~~~i~Dvl~~~e~---------~~~~~~l~frr~~~~~p~-~~d~~~~~~l~y~Q~~~d~l~G~~ 337 (525)
|+...++ .+..+.++++++|++++||+ ...+|+|+||+++|.+.. ..+++++++|+|.|+++||++|++
T Consensus 308 ~~~~~dk-~~sll~~~e~vlD~l~~~E~~~k~~~~~~~~~~~~L~FRvkff~p~~~~~~d~it~~LlYlQ~k~dIl~Grl 386 (655)
T 3pvl_A 308 YIALFDK-VSSLGSGSDHVMDAISQCEQYAKEQGAQERNAPWRLFFRKEVFTPWHNPSEDNVATNLIYQQVVRGVKFGEY 386 (655)
T ss_dssp EEEETTE-EEEEETSSCBHHHHHHHHHHHHHTTTCCGGGCCCEEEEEECCCCTTCCGGGCHHHHHHHHHHHHHHHHHTSS
T ss_pred EEecCCc-eeecccCceEeecHHHHHHHHHHhhccccCCCCeEEEEEEEEecCCcccccCHHHHHHHHHHHhcccccCcc
Confidence 9987543 45556788999999999984 135899999999997422 235678999999999999999999
Q ss_pred cccCCCCCCcchHHHHHHHHHHHHHh--cCCCCCCC-hhhhhhccCcccccccCCCHHHHHHHHHHHHHhc----CCCCH
Q psy8450 338 LVLPNEQIPQDIVYDVAKLAALLHRA--ADMSHPPA-MKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQT----APLHS 410 (525)
Q Consensus 338 ~~~~~~~~p~~~~~~~~~LaAl~~~~--~d~~~~~~-~~~l~~~lP~~~~~~~~~~~~~w~~~I~~~~~~l----~g~s~ 410 (525)
+| +.+++++.|||+++++ ||+++... ...+++|+|.+++.. ..+.++|++.|.+.|+++ +|+|+
T Consensus 387 pc--------~~E~~a~~LAAl~~Qae~Gd~~~~~~~~~~L~~~lP~~~l~~-~~~~~~w~~~I~~~hkk~~~~~~g~s~ 457 (655)
T 3pvl_A 387 RC--------EKEDDLAELASQQYFVDYGSEMILERLLSLVPTYIPDREITP-LKNLEKWAQLAIAAHKKGIYAQRRTDS 457 (655)
T ss_dssp CC--------SSHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHSCGGGCCS-SSCHHHHHHHHHHHHHHHHHTTCSSCH
T ss_pred CC--------ChHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhCCHHHHhc-cCCHHHHHHHHHHHHHhhhccccCCCH
Confidence 88 2345999999999986 67654332 346889999997641 147899999999999999 89999
Q ss_pred HHHHHHHHHHH-hcCCCCCceEEEEEeeCC------eEEEEEccCceEEeecCccceEEEeecccceeccccccCC-Cce
Q psy8450 411 IQAKAQLLEIL-SKWPLFGSSFFAIKRNGD------QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAES-GTL 482 (525)
Q Consensus 411 ~~Ak~~fL~~~-~~~p~yGs~~F~v~~~~~------~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~-~~~ 482 (525)
.+|+.+||+++ ++||+||++||+|++.++ +++||||+.||++++++++ ++.+|||++|.+|...+.+. +..
T Consensus 458 ~eAk~~yL~~a~~~lp~YG~~fF~vk~~~g~~lp~~~l~LgVn~~GV~v~d~~~k-~ll~f~~~eI~~is~~~~~~~~~~ 536 (655)
T 3pvl_A 458 QKVKEDVVNYARFKWPLLFSRFYEAYKFSGPPLPKSDVIVAVNWTGVYFVDEQEQ-VLLELSFPEIMAVSSSRGTKMMAP 536 (655)
T ss_dssp HHHHHHHHHHHHHHCTTTSCEEEEEEEEESSCCSCSEEEEEEETTEEEEECTTCC-EEEEEEGGGEEEEEEECCCSSSCC
T ss_pred HHHHHHHHHHHHHhccccCcEEEEEEecCCCCCCCccEEEEEcCCceEEEcCCCc-eEEEechhHceEEeccCccccccc
Confidence 99999999999 899999999999998755 6999999999999999988 55589999999987654221 113
Q ss_pred EEEEEecccccceEEEEecccHHHHHHHHHHHHHHHhhh
Q psy8450 483 YLEMKCGNLFQQRVARIQTDQAHEIARLIRQYMSLDRQK 521 (525)
Q Consensus 483 ~~~i~~g~~~~~~~~~~~t~qa~ei~~LI~~Yi~~~~~~ 521 (525)
.|.+.. .++..+.|+|++|.+|++||++|+..+.++
T Consensus 537 ~ftl~~---~~~~~~~F~T~~a~~I~~LI~~yi~~Lk~r 572 (655)
T 3pvl_A 537 SFTLAT---IKGDEYTFTSSNAEDIRDLVVTFLEGLRKR 572 (655)
T ss_dssp EEEEEE---TTSCEEEEECTTHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEe---ccCceEEEEcCCHHHHHHHHHHHHHHHhhc
Confidence 455543 245679999999999999999999988763
No 2
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=100.00 E-value=6.3e-80 Score=670.40 Aligned_cols=433 Identities=19% Similarity=0.297 Sum_probs=374.3
Q ss_pred cccccccccCCCCCccCCC-C-------------chHHHHHHHHHHHHhhcCCCCCCCCcchhHHHHHHHHhhhCCCCCc
Q psy8450 59 LDLVKFTCVPISEPLLKLE-P-------------PLAEIAVECFECIMRFMGDLPTTPDLTEVKCVYTILMHCHTHEPLR 124 (525)
Q Consensus 59 ~~~l~~~~~pi~~pLl~~~-~-------------~~~~~A~~~F~~il~~mgd~~~~~~~~~~~~~~~il~~~~~~~~Lr 124 (525)
++|++||++||++|||+++ + ++.++|+++|+.||+||||. ++.+++++|++.|+++++||
T Consensus 47 ~~~~~~s~~pi~~pLl~l~~~~~~~~~~~~~~~~~l~~~A~~~F~~i~~~~~~~------~~~~~~~~i~~~~~~~~~Lr 120 (555)
T 3au4_A 47 NPILRYTHHPLHSPLLPLPYGDINLNLLKDKGYTTLQDEAIKIFNSLQQLESMS------DPIPIIQGILQTGHDLRPLR 120 (555)
T ss_dssp CGGGSCCSSCCSSCSSCCCCTTCCHHHHHHTTCCCHHHHHHHHHHHHHHC--CC------CCHHHHHHHHHHHHHCTHHH
T ss_pred CchhhccCCCCcccccCCCCcccccccccccccchHHHHHHHHHHHHHhhccCC------cHHHHHHHHHHHhccchhhh
Confidence 4689999999999999995 3 46799999999999999984 34789999999999999999
Q ss_pred hHHHHHHHHHhcCCCC-hhh--hHHHHHHHHhhcccCCCcchHHHHHHHHhhhhhc-ccccchhHHHHHHHHHHhhhhcC
Q psy8450 125 DEVYCQLMKQTTSNKT-ESC--QRGWRLLSIVAAYFTCSDTLRPFLLKYLETAAYD-KRRAFHGTASVCLQNLRKTLRYG 200 (525)
Q Consensus 125 DEiy~Qi~KQ~t~n~~-~~~--~r~W~Ll~l~~~~f~PS~~l~~~l~~~l~~~~~~-~~~~~~~~a~~c~~~L~r~~~~g 200 (525)
||||||||||||+||+ ++. .|||+||++|+++|+||+.|.|||..||++++.. +..+.++||.+|+++|+|+ |
T Consensus 121 dEiy~Ql~kQ~t~n~~~~s~~~~r~W~Ll~~~~~~f~Ps~~~~~~l~~~l~~~~~~~~~~~~~~~a~~c~~~L~rt---g 197 (555)
T 3au4_A 121 DELYCQLIKQTNKVPHPGSVGNLYSWQILTCLSCTFLPSRGILKYLKFHLKRIREQFPGTEMEKYALFTYESLKKT---K 197 (555)
T ss_dssp HHHHHHHHHHTSSCSSTTCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHTTC---C
T ss_pred hHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHhc---C
Confidence 9999999999999999 654 8999999999999999999999999999987642 2334578999999999996 9
Q ss_pred CCCCCCCHHHHHHHHcCCCceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecC
Q psy8450 201 GRKNVPSVEEVTAVSAGRNSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPL 280 (525)
Q Consensus 201 ~R~~~Ps~~Ei~a~~~~~~~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L 280 (525)
+|+++||..||+|+.+++++.+.| +|+||+...+.|+++||++|+++.||+++||.+.. ++||||+..+ ..+++|
T Consensus 198 ~R~~~Ps~~Ei~a~~~~~~~~~~V-~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~--~~FgL~~~~~--~~~~~L 272 (555)
T 3au4_A 198 CREFVPSRDEIEALIHRQEMTSTV-YCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSR--NMFALFEYNG--HVDKAI 272 (555)
T ss_dssp CCSSCCCHHHHHHHHTTCCEEEEE-EETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCC--SEEEEEEESS--SCEEEC
T ss_pred CCCCCCCHHHHHHHHhCCCcceEE-EecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCC--CceEEEEEeC--CeeEec
Confidence 999999999999999999999885 67899999999999999999999999999999742 7999998753 357889
Q ss_pred CCcchhhhhhHHHhhc-------CCcEEEEEeeeccccCCcc-cchhhHHhhhhhhchhhhhccccccCCCCCCcchHHH
Q psy8450 281 AKEEYILDVTTELHKN-------QQVFYLIFCRSVWYFPLRL-DCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYD 352 (525)
Q Consensus 281 ~~~~~i~Dvl~~~e~~-------~~~~~l~frr~~~~~p~~~-d~~~~~~l~y~Q~~~d~l~G~~~~~~~~~~p~~~~~~ 352 (525)
+++++++|++++||+. +.+++|+||+++|.+|... +++++++++|.|+++||++|+++| +.++
T Consensus 273 ~~~~~i~D~~~~we~~~~~~~~~~~~~~l~fR~~ff~~~~~~~~d~~~~~lly~Q~~~dil~G~~~~---------~~e~ 343 (555)
T 3au4_A 273 ESRTVVADVLAKFEKLAATSEVGDLPWKFYFKLYCFLDTDNVPKDSVEFAFMFEQAHEAVIHGHHPA---------PEEN 343 (555)
T ss_dssp CTTSBHHHHHHHHHHHTTSCCTTCCCCEEEEEEEECSCCTTCCTTSHHHHHHHHHHHHHHHTTCSCC---------CHHH
T ss_pred CCCCchhHHHHHHHHHhhccCCCCCceEEEEEEEeecCcccCCcchHHHHhhHHHHHHHHHCCCCCC---------CHHH
Confidence 9999999999999862 3589999999999877642 356889999999999999999988 6899
Q ss_pred HHHHHHHHHHh--cCCCCCCChhhhhhccCcccccc-------------c---------CCCHHHH--------HHHHHH
Q psy8450 353 VAKLAALLHRA--ADMSHPPAMKETKFLLPKPALTQ-------------R---------DIKPAQW--------VQMVQS 400 (525)
Q Consensus 353 ~~~LaAl~~~~--~d~~~~~~~~~l~~~lP~~~~~~-------------~---------~~~~~~w--------~~~I~~ 400 (525)
+++||||++++ ||++.......+++|+|...+.. . ..++++| .+.|.+
T Consensus 344 a~~LAAl~lQ~~~GD~~~~~~~~~l~~~lP~~~l~~~~~~~~k~~s~~~~~l~~~~~~~~~~~~~W~~~~~~~~~~~I~~ 423 (555)
T 3au4_A 344 LQVLAALRLQYLQGDYTLHAAIPPLEEVYSLQRLKARISQSTKTFSFRTGSVVRQKVEEEQMLDMWIKEEVSSARASIID 423 (555)
T ss_dssp HHHHHHHHHHHHHCSCCTTCCCCCGGGTSCCHHHHHHHHHTTCCEECCTTSCCEECCCCHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCccccchhhhhhhCCHHHhhhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999998764 78876555567889999965321 0 0124567 788999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCCCCCceEEEEEeeCC----eEEEEEccCceEEeecCccceEEEeecccceeccccc
Q psy8450 401 HWTQTAPLHSIQAKAQLLEILSKWPLFGSSFFAIKRNGD----QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVR 476 (525)
Q Consensus 401 ~~~~l~g~s~~~Ak~~fL~~~~~~p~yGs~~F~v~~~~~----~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~ 476 (525)
.|++++|+|+.+|+..||+++++||+||++||+|+...+ +++||||..||+++++++++++.++||++|.+|+..
T Consensus 424 ~~~~~~g~s~~eA~~~yL~~~~~lp~yG~~~F~v~~~~~~~~~~l~LgV~~~GI~v~~~~~k~~l~~~~~~~I~~~~~~- 502 (555)
T 3au4_A 424 KWRKFQGMNQEQAMAKYMALIKEWPGYGSTLFDVECKEGGFPQELWLGVSADAVSVYKRGEGRPLEVFQYEHILSFGAP- 502 (555)
T ss_dssp HHHTTTTCCHHHHHHHHHHHHTTSTTTTCEEEEEEEEESSSCSEEEEEECSSEEEEEETTCSSCSEEEEGGGEEEEEEE-
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhCCCcCceEEEEEecCCCCCceEEEEEcccceEEECCCCCeeEEEEEhhheeeecCC-
Confidence 999999999999999999999999999999999986533 799999999999999999999999999999998742
Q ss_pred cCCCceEEEEEecccccceEEEEecccHHHHHHHHHHHHHHHhhhc
Q psy8450 477 AESGTLYLEMKCGNLFQQRVARIQTDQAHEIARLIRQYMSLDRQKN 522 (525)
Q Consensus 477 ~~~~~~~~~i~~g~~~~~~~~~~~t~qa~ei~~LI~~Yi~~~~~~~ 522 (525)
++ ..|+|.+|+ +.+.|+|++|.+|++||++|++.+++++
T Consensus 503 -~~--~~f~i~~~~----~~l~f~T~qa~~i~~LI~~Yi~~l~~~r 541 (555)
T 3au4_A 503 -LA--NTYKIVVDE----RELLFETSEVVDVAKLMKAYISMIVKKR 541 (555)
T ss_dssp -ET--TEEEEEETT----EEEEEECTTHHHHHHHHHHHHHHHHHHH
T ss_pred -CC--CEEEEEECC----cEEEEECCCHHHHHHHHHHHHHHHHHhh
Confidence 22 245677774 3699999999999999999999998765
No 3
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=100.00 E-value=2.7e-41 Score=342.35 Aligned_cols=279 Identities=16% Similarity=0.241 Sum_probs=227.7
Q ss_pred eeeEEecCCCcEEEEEeCC--cchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhhhhHHHhh---
Q psy8450 221 KRQLYRLPGGSETVINTKS--TTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHK--- 295 (525)
Q Consensus 221 ~~~iv~lpdg~~~~v~v~s--~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl~~~e~--- 295 (525)
....|+|+||+...++|++ +|||+|++ +++||.... .++||||++.++ .++.|.++++++|+++.|++
T Consensus 6 ~~i~V~l~dg~~~~~~i~~~~~tt~~el~----e~lgL~~~~-~~~FaL~~~~~~--~e~~L~~~~~~~d~~~~W~~~l~ 78 (322)
T 4dxa_B 6 EKVRIYRMDGSYRSVELKHGNNTTVQQIM----EGMRLSQET-QQYFTIWICSEN--LSLQLKPYHKPLQHVRDWPEILA 78 (322)
T ss_dssp CEEEEECTTSCEEEEECTTGGGCCHHHHH----TTSSCCTTG-GGGEEEEEECSS--CEEECCTTCCHHHHHHTHHHHHH
T ss_pred eEEEEEEECCcEEEEEEcCCCCCcHHHHH----HHhCcCccc-cCeeEEEEECCc--cccccCccccHHHHHHHHHHHHH
Confidence 3344689999999999999 99999994 568998642 489999998643 45678999999999999975
Q ss_pred -------cCCcEEEEEeeecccc---CCcccchhhHHhhhhhhchhhhhccccccCCCCCCcchHHHHHHHHHHHHHh--
Q psy8450 296 -------NQQVFYLIFCRSVWYF---PLRLDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRA-- 363 (525)
Q Consensus 296 -------~~~~~~l~frr~~~~~---p~~~d~~~~~~l~y~Q~~~d~l~G~~~~~~~~~~p~~~~~~~~~LaAl~~~~-- 363 (525)
...+++|+|||++|.. +...+++.+++++|.|+++||++|+++| +.+++++|||+++|+
T Consensus 79 ~~~~~~~~~~~p~l~~rr~~f~~~~~~~~~~d~~t~~l~y~Q~~~dil~G~~~c---------~~e~a~~LAAl~~q~e~ 149 (322)
T 4dxa_B 79 ELTNLDPQRETPQLFLRRDVRLPLEVEKQIEDPLAILILFDEARYNLLKGFYTA---------PDAKLITLASLLLQIVY 149 (322)
T ss_dssp HHCSCCCCCCCCEEEEEECTTCCHHHHTTCCCHHHHHHHHHHHHHHHHHTCCCC---------CHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCCCceEEEEEEeecccccccccccCHHHHHHHHHHHHHHHHCCcccC---------CHHHHHHHHHHHHHHHh
Confidence 1345799999999974 2335678999999999999999999998 779999999999986
Q ss_pred cCCCC---CCCh---hhhhhccCcccccccCCCHHHHHHHHHHHHHhc---CCCCHH--HHHHHHHHHHhcCCCCCceEE
Q psy8450 364 ADMSH---PPAM---KETKFLLPKPALTQRDIKPAQWVQMVQSHWTQT---APLHSI--QAKAQLLEILSKWPLFGSSFF 432 (525)
Q Consensus 364 ~d~~~---~~~~---~~l~~~lP~~~~~~~~~~~~~w~~~I~~~~~~l---~g~s~~--~Ak~~fL~~~~~~p~yGs~~F 432 (525)
||++. .+.. +.+++|+|.+++. . +.++|.+.|.+.|+++ +|+|++ +|+..||+++++||+||++||
T Consensus 150 Gd~~~~~~~~~~l~~~~l~~~lP~~~~~--~-~~~~~~~~I~~~h~~~~~~~g~s~~~a~a~~~yL~~~~~lp~yG~~~f 226 (322)
T 4dxa_B 150 GNYESKKHKQGFLNEENLKSIVPVTKLK--S-KAPHWTNRILHEYKNLSTSEGVSKEMHHLQRMFLQNCWEIPTYGAAFF 226 (322)
T ss_dssp CSCCHHHHSSSCSCHHHHTTTSCTTTTT--T-TGGGSHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHTSTTTTCEEE
T ss_pred CCCCcccccccccchhhhhhhCCHHHHh--c-CHHHHHHHHHHHHHhcccccCCChhHHHHHHHHHHHHhcCCCcCeEEE
Confidence 67653 2222 4588999999864 2 4468999999999999 999864 579999999999999999999
Q ss_pred EEEeeC-----C----eEEEEEccCceEEeecCccceEEEeecccceeccccccCCCceEEEEEecccccceEEEEeccc
Q psy8450 433 AIKRNG-----D----QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNLFQQRVARIQTDQ 503 (525)
Q Consensus 433 ~v~~~~-----~----~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~~~~~~~~~~t~q 503 (525)
+|+... + +++||||..||++++++|++++.++||.+|. |.. +.+..+|+|..|+. +..+.|+|+|
T Consensus 227 ~v~~~~~~~g~~~~~~~~~LgV~~~Gv~v~~~~tk~~l~~~~~~~is-w~~---s~~~~~f~i~~~~~--~~~~~~~t~q 300 (322)
T 4dxa_B 227 TGQIFTKASPSNHKVIPVYVGVNIKGLHLLNMETKALLISLKYGCFM-WQL---GDTDTCFQIHSMEN--KMSFIVHTKQ 300 (322)
T ss_dssp EEEEECC-------EEEEEEEECSSEEEEEETTTCCEEEEEETTSEE-EEE---CSSTTEEEEEESSS--CCEEEEECTT
T ss_pred EEEEeccCCCCccCCCeEEEEEccCceEEEcCCCceeeeccccceeE-Eee---cCCCCEEEEEECCC--CccEEEEeCc
Confidence 999632 1 8999999999999999999999999999995 763 23446899999874 4579999999
Q ss_pred HHHHHHHHHHHHHHHhhhccc
Q psy8450 504 AHEIARLIRQYMSLDRQKNVI 524 (525)
Q Consensus 504 a~ei~~LI~~Yi~~~~~~~~~ 524 (525)
|++|++||.+|+..+.++..+
T Consensus 301 ~~~i~~li~~~~~~~~~~~~~ 321 (322)
T 4dxa_B 301 AGLVVKLLMKLNGQLMPTERN 321 (322)
T ss_dssp HHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHhhhhhc
Confidence 999999999999999887543
No 4
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=100.00 E-value=1.1e-40 Score=344.65 Aligned_cols=288 Identities=17% Similarity=0.219 Sum_probs=229.8
Q ss_pred CCCCCCHHHHHHHHcCCCceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcC---Cceee
Q psy8450 202 RKNVPSVEEVTAVSAGRNSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEG---DAFTM 278 (525)
Q Consensus 202 R~~~Ps~~Ei~a~~~~~~~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~---~~~~~ 278 (525)
+...+...+.....+.+++.+. |+||||+...+.|+++||++|+++.||+++||.+. ++|||++...+ +...+
T Consensus 68 l~~y~~~~~~~l~~~~~~~~~~-V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~---~~FgL~~~~~~~~~~~~~~ 143 (371)
T 3ivf_A 68 LDYYMLRNGDTMEYRKKQRPLK-IRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNH---DEYSLVRELMEEKKDDELN 143 (371)
T ss_dssp GGGGTCCTTCEEEEEECEEEEE-EECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCG---GGEEEECCC----------
T ss_pred HHHhCCCCCceeeccCceeEEE-EECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCc---cccEEEEEecccccchHHH
Confidence 3444444443333444556566 57999999999999999999999999999999986 79999987532 23456
Q ss_pred cCCCcchhhhhhHHHhhcCCcEEEEEeeeccccCC--cccchhhHHhhhhhhchhhhhccccccCCCCCCcchHHHHHHH
Q psy8450 279 PLAKEEYILDVTTELHKNQQVFYLIFCRSVWYFPL--RLDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKL 356 (525)
Q Consensus 279 ~L~~~~~i~Dvl~~~e~~~~~~~l~frr~~~~~p~--~~d~~~~~~l~y~Q~~~d~l~G~~~~~~~~~~p~~~~~~~~~L 356 (525)
+|+.+..+.+.. ...+++|+||||+|..+. ..+|+.++.++|.|+++||++|+++| +.+++++|
T Consensus 144 wL~~~k~l~~q~-----~~~~~~l~frvKf~~~d~~~~~~D~~~~~l~y~Q~~~dil~G~~~c---------~~e~a~~L 209 (371)
T 3ivf_A 144 WLDHGRTLREQG-----VEEHETLLLRRKFFYSDQNVDSRDPVQLNLLYVQARDDILNGSHPV---------SFDKACEF 209 (371)
T ss_dssp CCCTTSBTGGGT-----CCTTCEEEEEECCCCBCSSCBTTCHHHHHHHHHHHHHHHHTSSSCC---------CHHHHHHH
T ss_pred HHhcCchhHhhC-----CCCCceEEEEEEEecCCccccCCCHHHHHHHHHHhhHHHhCceeec---------CHHHHHHH
Confidence 777766665432 134678999999997532 13567899999999999999999998 67999999
Q ss_pred HHHHHHh--cCCCCC---CChhhhhhccCcccccccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCCceE
Q psy8450 357 AALLHRA--ADMSHP---PAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLFGSSF 431 (525)
Q Consensus 357 aAl~~~~--~d~~~~---~~~~~l~~~lP~~~~~~~~~~~~~w~~~I~~~~~~l~g~s~~~Ak~~fL~~~~~~p~yGs~~ 431 (525)
||+++++ ||++.. +....+.+|+|++++. .. + ++.|.+.|++++|+|+.+|+.+||+++++||+||++|
T Consensus 210 AAl~~qae~Gd~~~~~~~~~~~~l~~~lP~~~~~--~~--~--e~~I~~~~~~~~g~s~~eA~~~yL~~~~~l~~yG~~~ 283 (371)
T 3ivf_A 210 AGFQCQIQFGPHNEQKHKAGFLDLKDFLPKEYVK--QK--G--ERKIFQAHKNCGQMSEIEAKVRYVKLARSLKTYGVSF 283 (371)
T ss_dssp HHHHHHHHHCSCCTTTSCTTCSCGGGTSCGGGTT--SC--H--HHHHHHHHHHTTTCCHHHHHHHHHHHHHHSTTTTCEE
T ss_pred HHHHHHHHhCCCChhhcccchhcccccCCHHHhC--ch--H--HHHHHHHHHHccCCCHHHHHHHHHHHHhcccccCcEE
Confidence 9999986 676643 2234688999999764 22 1 5789999999999999999999999999999999999
Q ss_pred EEEEeeC-C-----eEEEEEccCceEEeecCccceEEEeecccceeccccccCCCceEEEEEecccccceEEEEecccHH
Q psy8450 432 FAIKRNG-D-----QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNLFQQRVARIQTDQAH 505 (525)
Q Consensus 432 F~v~~~~-~-----~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~~~~~~~~~~t~qa~ 505 (525)
|.|++.. + +++||||++||+++++++++++.++||++|.+|+.. ...|.|.+|+.. +..+.|+|+||+
T Consensus 284 f~vk~~~~g~~~~~~~~LgI~~~GI~v~~~~~k~~l~~~~~~~I~~~~~~-----~~~f~I~~~~~~-~~~~~~~T~~~~ 357 (371)
T 3ivf_A 284 FLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNIKRWAAS-----PKSFTLDFGDYQ-DGYYSVQTTEGE 357 (371)
T ss_dssp EEEEEECTTSSCEEEEEEEECSSEEEEEETTTCCEEEEEEGGGCCEEEEE-----TTEEEEECGGGS-SSCEEEECSCHH
T ss_pred EEEEEeccCCCCCccEEEEEcCCcEEEEcCCCCceEEeeehhheeeeecC-----CCEEEEEECCcc-CcEEEEECChHH
Confidence 9998642 2 699999999999999999999999999999998642 257888899765 468999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy8450 506 EIARLIRQYMSLDR 519 (525)
Q Consensus 506 ei~~LI~~Yi~~~~ 519 (525)
+|++||++||++++
T Consensus 358 ~I~~Li~~Yi~~i~ 371 (371)
T 3ivf_A 358 QIAQLIAGYIDIIL 371 (371)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999874
No 5
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=100.00 E-value=2.9e-40 Score=334.02 Aligned_cols=294 Identities=14% Similarity=0.193 Sum_probs=233.6
Q ss_pred CCCCHHHHHHHHc--CCCceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCC
Q psy8450 204 NVPSVEEVTAVSA--GRNSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLA 281 (525)
Q Consensus 204 ~~Ps~~Ei~a~~~--~~~~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~ 281 (525)
..||..|+....+ ++++.+. |+|+||+ ..+.++++||++|+++.||++|||.+. ++|||++.. + ...++|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~-V~lldg~-~~~~v~~~t~~~el~~~v~~~l~L~e~---~~FgL~~~~-~-~~~~wL~ 77 (314)
T 1h4r_A 5 AIASRMSFSSLKRKQPKTFTVR-IVTMDAE-MEFNCEMKWKGKDLFDLVCRTLGLRET---WFFGLQYTI-K-DTVAWLK 77 (314)
T ss_dssp ----------------CEEEEE-EECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCCG---GGEEEEEEE-T-TEEEECC
T ss_pred CCCcccccccccCCCCCeeEEE-EEeCCce-EEEEeCCCCcHHHHHHHHHHHhCCCCC---ccceEEEEe-C-CcCeeCC
Confidence 4678888754433 4556666 5688985 669999999999999999999999986 899999983 3 3467888
Q ss_pred CcchhhhhhHHHhhcCCcEEEEEeeeccccCC--cccchhhHHhhhhhhchhhhhccccccCCCCCCcchHHHHHHHHHH
Q psy8450 282 KEEYILDVTTELHKNQQVFYLIFCRSVWYFPL--RLDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAAL 359 (525)
Q Consensus 282 ~~~~i~Dvl~~~e~~~~~~~l~frr~~~~~p~--~~d~~~~~~l~y~Q~~~d~l~G~~~~~~~~~~p~~~~~~~~~LaAl 359 (525)
++..+.|... +.+.+++|+||+++|..+. ...++.+++++|.|+++||++|+++| +.+++++||||
T Consensus 78 ~~~~i~~q~~---~~~~~~~l~fr~kf~~~~~~~~l~~~~~~~l~y~Q~~~dil~g~~~~---------~~e~a~~Laal 145 (314)
T 1h4r_A 78 MDKKVLDHDV---SKEEPVTFHFLAKFYPENAEEELVQEITQHLFFLQVKKQILDEKIYC---------PPEASVLLASY 145 (314)
T ss_dssp TTSBGGGSSC---CCSSSEEEEEEESSCCSSHHHHCCSHHHHHHHHHHHHHHHHTTSSCC---------CHHHHHHHHHH
T ss_pred CccCHHHcCC---CCCCCEEEEEEEEEecCCchhhhcCHHHHHHHHHHHHHHHhCCCccC---------CHHHHHHHHHH
Confidence 9888887532 2356899999999997643 34568999999999999999999998 78999999999
Q ss_pred HHHh--cCCCCCC---ChhhhhhccCcccccccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCCceEEEE
Q psy8450 360 LHRA--ADMSHPP---AMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLFGSSFFAI 434 (525)
Q Consensus 360 ~~~~--~d~~~~~---~~~~l~~~lP~~~~~~~~~~~~~w~~~I~~~~~~l~g~s~~~Ak~~fL~~~~~~p~yGs~~F~v 434 (525)
++|+ ||++... ..-.+..|+|++++.....++++|++.|.+.|++++|+|+.+|+..||+++++||+||++||.|
T Consensus 146 ~~Qa~~Gd~~~~~~~~~~~~~~~~lP~~~~~~~~~~~~~~~~~I~~~~~~~~g~s~~eA~~~yL~~~~~lp~yG~~~f~v 225 (314)
T 1h4r_A 146 AVQAKYGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFAI 225 (314)
T ss_dssp HHHHHHCSCCTTTSCTTTTTTCCCSCHHHHTTSCCCHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHTTSTTTTCEEEEE
T ss_pred HHHHHHCCCCccccchhhcchhhcCCHHHHhhccCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCccCceEEEe
Confidence 9986 7776432 2334788999998765556789999999999999999999999999999999999999999999
Q ss_pred EeeCC-eEEEEEccCceEEeecCccc-eEEEeecccceeccccccCCCceEEEEEecccccceEEEEeccc---HHHHHH
Q psy8450 435 KRNGD-QQILALNKHGVHFLNLLTHE-TISSVPYGDVISTRKVRAESGTLYLEMKCGNLFQQRVARIQTDQ---AHEIAR 509 (525)
Q Consensus 435 ~~~~~-~~~LaIn~~Gi~~l~~~tk~-~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~~~~~~~~~~t~q---a~ei~~ 509 (525)
++..+ +++||||..||++++++++. ++.+|+|++|.+|.. +.+ .|.|.+++. ....+.|+|++ +..|.+
T Consensus 226 ~~~~g~~~~LgI~~~Gi~v~~~~~k~~~~~~f~w~~I~~~~~---~~~--~f~i~~~~~-~~~~~~f~~~~~~~~k~i~~ 299 (314)
T 1h4r_A 226 RNKKGTELLLGVDALGLHIYDPENRLTPKISFPWNEIRNISY---SDK--EFTIKPLDK-KIDVFKFNSSKLRVNKLILQ 299 (314)
T ss_dssp EETTCCEEEEEECSSEEEEECTTCSSSCSEEEEGGGEEEEEE---ETT--EEEEEESST-TSCCEEEECCCHHHHHHHHH
T ss_pred ecCCCCEEEEEEeCCceEEEeCCCCcccceEEecccceEEEe---eCC--EEEEEEcCC-CCceEEEEcCCHHHHHHHHH
Confidence 98766 99999999999999999886 788999999999753 223 466666643 23479999986 777999
Q ss_pred HHHHHHHHHhhhc
Q psy8450 510 LIRQYMSLDRQKN 522 (525)
Q Consensus 510 LI~~Yi~~~~~~~ 522 (525)
|+.+|...++.++
T Consensus 300 l~~~~h~f~~~~r 312 (314)
T 1h4r_A 300 LCIGNHDLFMRRR 312 (314)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988754
No 6
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=100.00 E-value=6e-39 Score=331.37 Aligned_cols=285 Identities=16% Similarity=0.148 Sum_probs=239.7
Q ss_pred eEEecCCCc----EEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhhhhHHHhhc--
Q psy8450 223 QLYRLPGGS----ETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHKN-- 296 (525)
Q Consensus 223 ~iv~lpdg~----~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl~~~e~~-- 296 (525)
..|+|+||+ ...+.++++|||+||++.||+++||.+. ++|||+.....+...+||++++.+.|++.+|++.
T Consensus 10 l~V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~~~---~~FgL~~~~~~~~~~~wL~~~~~l~~~~~k~~~~~~ 86 (375)
T 2al6_A 10 FHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNV---ACYGLRLSHLQSEEVHWLHLDMGVSNVREKFELAHP 86 (375)
T ss_dssp ECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCG---GGEEEEEEETTSSCEEEECTTSBHHHHHHHHHTTSC
T ss_pred EEEEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCCeE---eEEEEEEEEcCCCceEeeCCccchhhhhhhhhcccC
Confidence 346799997 8999999999999999999999999776 7999999874333356889999999999999863
Q ss_pred CCcEEEEEeeecccc-CC--cccchhhHHhhhhhhchhhhhcc-ccccCCCCCCcchHHHHHHHHHHHHH--hcCCCCCC
Q psy8450 297 QQVFYLIFCRSVWYF-PL--RLDCQLYVQVLFNQIAPDYLEGL-LLVLPNEQIPQDIVYDVAKLAALLHR--AADMSHPP 370 (525)
Q Consensus 297 ~~~~~l~frr~~~~~-p~--~~d~~~~~~l~y~Q~~~d~l~G~-~~~~~~~~~p~~~~~~~~~LaAl~~~--~~d~~~~~ 370 (525)
..++++.||+++|.. +. ..+|+.+++++|.|+++||++|+ ++| +.+++++||||+++ .+|+++..
T Consensus 87 ~~~~~l~fRvrF~~~~~~~l~~~D~~t~~~~y~Q~r~Dil~g~~~~~---------~~e~al~LAaL~~q~~~gD~~~~~ 157 (375)
T 2al6_A 87 PEEWKYELRIRYLPKGFLNQFTEDKPTLNFFYQQVKNDYMLEIADQV---------DQEIALKLGCLEIRRSYGEMRGNA 157 (375)
T ss_dssp GGGEEEEEEECCCCTTHHHHHTTCHHHHHHHHHHHHHHHHHHTTTTS---------CHHHHHHHHHHHHHHHTTTSCTTG
T ss_pred CCceEEEEEEEEecCCHHHhhhcCHHHHHHHHHHHHHHHHcCCCccC---------CHHHHHHHHHHHHHHHhhhccchh
Confidence 368999999998865 32 12456789999999999999998 667 67999999999987 47775431
Q ss_pred -----Ch----hh--hhhccCcccccccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCCceEEEEEeeCC
Q psy8450 371 -----AM----KE--TKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLFGSSFFAIKRNGD 439 (525)
Q Consensus 371 -----~~----~~--l~~~lP~~~~~~~~~~~~~w~~~I~~~~~~l~g~s~~~Ak~~fL~~~~~~p~yGs~~F~v~~~~~ 439 (525)
+. +. ++.|||++++. ..+.++|++.|.+.|++++|+++++|+..||+++++||+||+++|.|+..++
T Consensus 158 ~~~k~~~~~l~k~~~l~~flP~~~~~--~~~~~~~~k~I~~~~k~~~g~s~~eAk~~yL~~~~~l~~yG~~~F~v~~~~~ 235 (375)
T 2al6_A 158 LEKKSNYEVLEKDVGLRRFFPKSLLD--SVKAKTLRKLIQQTFRQFANLNREESILKFFEILSPVYRFDKECFKCALGSS 235 (375)
T ss_dssp GGSHHHHHHHHHTTCGGGTSCHHHHH--SSCHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHTTTCCCSCEEEEEEECSS
T ss_pred hcccCCHHHhhhcccHHHhCCHHHHH--HhChHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhhcccCCcEEEEEeecCC
Confidence 11 22 67899999865 6788899999999999999999999999999999999999999999998754
Q ss_pred -----eEEEEEccCceEEeecCccceEEEeecccceecccccc--CCCceEEEEEecccccceEEEEec-ccHHHHHHHH
Q psy8450 440 -----QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRA--ESGTLYLEMKCGNLFQQRVARIQT-DQAHEIARLI 511 (525)
Q Consensus 440 -----~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~--~~~~~~~~i~~g~~~~~~~~~~~t-~qa~ei~~LI 511 (525)
.++||++. ||++++++++++...++|++|.+|+.... +++..+|+|.+++..++.++.|+| ++|++|++||
T Consensus 236 ~~~~~~l~lg~~~-GI~~~~~~~~~~~~~~~f~~I~~i~~~~~~~~~~~~~~~I~v~~~~~~~~f~~~t~~~a~~i~~Li 314 (375)
T 2al6_A 236 WIISVELAIGPEE-GISYLTDKGANPTHLADFNQVQTIQYSNSEDKDRKGMLQLKIAGAPEPLTVTAPSLTIAENMADLI 314 (375)
T ss_dssp SCEEEEEEEETTT-EEEEESSTTSCEEEEECGGGEEEEEEECCSSSCCCEEEEEEETTCSSCEEEEESSHHHHHHHHHHH
T ss_pred CCcceEEEEecCC-CEEEEeCCCCceEEEechhHccEEEEEeccccCCceEEEEEECCCCCcEEEEeCCHHHHHHHHHHH
Confidence 68889875 99999988888999999999999975433 345578888766545677899999 6999999999
Q ss_pred HHHHHHHhhhc
Q psy8450 512 RQYMSLDRQKN 522 (525)
Q Consensus 512 ~~Yi~~~~~~~ 522 (525)
++|++++++++
T Consensus 315 ~gY~rl~~~~~ 325 (375)
T 2al6_A 315 DGYCRLVNGAT 325 (375)
T ss_dssp HHHHHHHHTCS
T ss_pred hhheEEecCCC
Confidence 99999998754
No 7
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=100.00 E-value=4e-39 Score=322.79 Aligned_cols=279 Identities=13% Similarity=0.144 Sum_probs=230.5
Q ss_pred ceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhhhhHHHhhcCCc
Q psy8450 220 SKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHKNQQV 299 (525)
Q Consensus 220 ~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl~~~e~~~~~ 299 (525)
+.+. |+|+||+ ..+.++++||++|+++.||+++||.+. ++|||++...++ ..++|+++..+.|... +...+
T Consensus 2 i~~~-V~l~d~~-~~~~v~~~tt~~el~~~v~~~l~L~e~---~~FgL~~~~~~~-~~~wLd~~~~l~~q~~---~~~~~ 72 (294)
T 1ef1_A 2 ISVR-VTTMDAE-LEFAIQPNTTGKQLFDQVVKTIGLREV---WFFGLQYQDTKG-FSTWLKLNKKVTAQDV---RKESP 72 (294)
T ss_dssp EEEE-EEETTEE-EEEEECTTCBHHHHHHHHHHHHTCCCG---GGEEEEEEBTTS-CEEECCSSSBGGGSCB---CCCSS
T ss_pred EEEE-EEECCce-EEEEECCCCcHHHHHHHHHHHcCCCCc---ceeEEEEECCCC-ceeecccccCHHhhcc---CCCCC
Confidence 4566 4677886 569999999999999999999999987 799999987433 4567888888876421 23568
Q ss_pred EEEEEeeecccc-CC-cccchhhHHhhhhhhchhhhhccccccCCCCCCcchHHHHHHHHHHHHHh--cCCCCCC---Ch
Q psy8450 300 FYLIFCRSVWYF-PL-RLDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRA--ADMSHPP---AM 372 (525)
Q Consensus 300 ~~l~frr~~~~~-p~-~~d~~~~~~l~y~Q~~~d~l~G~~~~~~~~~~p~~~~~~~~~LaAl~~~~--~d~~~~~---~~ 372 (525)
++|+||+++|.. |. ...++.++.++|.|+++||++|+++| +.+++++||||++|+ ||++... ..
T Consensus 73 ~~l~fr~kf~~~~~~~~l~~~~~~~l~y~Q~~~dil~g~~~~---------~~e~a~~Laal~~q~~~Gd~~~~~~~~~~ 143 (294)
T 1ef1_A 73 LLFKFRAKFYPEDVSEELIQDITQRLFFLQVKEGILNDDIYC---------PPETAVLLASYAVQSKYGDFNKEVHKSGY 143 (294)
T ss_dssp EEEEEEESSCCSCHHHHCCSHHHHHHHHHHHHHHHHTTSSCC---------CHHHHHHHHHHHHHHHHCSCCTTTSCTTT
T ss_pred EEEEEEEEEECCChHHhhccHHHHHHHHHHHHHHHHcCcccC---------CHHHHHHHHHHHHHHHhCCCCccccChhh
Confidence 999999999975 32 34557899999999999999999998 679999999999886 7776432 22
Q ss_pred hhhhhccCcccccccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCCceEEEEEeeCC-eEEEEEccCceE
Q psy8450 373 KETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLFGSSFFAIKRNGD-QQILALNKHGVH 451 (525)
Q Consensus 373 ~~l~~~lP~~~~~~~~~~~~~w~~~I~~~~~~l~g~s~~~Ak~~fL~~~~~~p~yGs~~F~v~~~~~-~~~LaIn~~Gi~ 451 (525)
-...+|+|++++...+.++++|++.|.+.|++++|+|+.+|+..||+++++||+||++||+|++..+ +++||||+.||+
T Consensus 144 l~~~~~lP~~~~~~~~~~~~~~~~~I~~~~~~~~g~s~~~A~~~yL~~~~~lp~yG~~~f~v~~~~g~~~~Lgv~~~Gi~ 223 (294)
T 1ef1_A 144 LAGDKLLPQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKIAQDLEMYGVNYFSIKNKKGSELWLGVDALGLN 223 (294)
T ss_dssp TTTCCCSCHHHHHHBCCCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTTSTTTTCEEEEEECTTCCEEEEEEETTEEE
T ss_pred ccccccCCHHHHhhcCCCHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHcccCccCceEEeeecCCCCEEEEEEecCcEE
Confidence 2347899999876555678999999999999999999999999999999999999999999998766 999999999999
Q ss_pred EeecCcc-ceEEEeecccceeccccccCCCceEEEEEecccccceEEEEeccc---HHHHHHHHHHHHHHHhhhc
Q psy8450 452 FLNLLTH-ETISSVPYGDVISTRKVRAESGTLYLEMKCGNLFQQRVARIQTDQ---AHEIARLIRQYMSLDRQKN 522 (525)
Q Consensus 452 ~l~~~tk-~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~~~~~~~~~~t~q---a~ei~~LI~~Yi~~~~~~~ 522 (525)
+++++++ .++.+|+|++|.+|.. +. -.|.|.+++. +...+.|.|++ +..|.+|+.+|...+...+
T Consensus 224 v~~~~~k~~~~~~f~w~~I~~~~~---~~--~~f~i~~~~~-~~~~~~f~~~~~~~~k~l~~l~~~~h~f~~~~r 292 (294)
T 1ef1_A 224 IYEQNDRLTPKIGFPWSEIRNISF---ND--KKFVIKPIDK-KAPDFVFYAPRLRINKRILALCMGNHELYMRRR 292 (294)
T ss_dssp EEETTCSSSCSEEEEGGGEEEEEE---ET--TEEEEEESSS-SSCCEEEECSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCccccceEEEcccceEeee---cC--CEEEEEEccC-ccceEEEEeCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999988 6889999999998753 22 3566666643 34579999987 7888899999998887654
No 8
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=100.00 E-value=2.1e-37 Score=333.93 Aligned_cols=281 Identities=12% Similarity=0.158 Sum_probs=231.8
Q ss_pred CCCceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhhhhHHHhhc
Q psy8450 217 GRNSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHKN 296 (525)
Q Consensus 217 ~~~~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl~~~e~~ 296 (525)
++++.+.| +|+||+ ..|.|+++||++||++.||.+|||.+. ++|||++.+.++ ..+||+++..+.+... +.
T Consensus 2 ~k~i~v~V-~llDgt-~e~~vd~~tt~~ell~~V~~~LgL~e~---~~FGL~~~d~~~-~~~WLd~~k~i~~q~~---~~ 72 (575)
T 2i1j_A 2 PKSMNVRV-TTMDAE-LEFAIQQTTTGKQLFDQVVKTIGLREV---WFFGLQYTDSKG-DLTWIKLYKKVMQQDV---KK 72 (575)
T ss_dssp -CEEEEEE-ECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCCG---GGEEEEEEBTTS-CEEECCTTSBGGGSCB---CC
T ss_pred CceEEEEE-EeCCCe-EEEEECCCCCHHHHHHHHHHHcCCCCc---cceeEEEEecCc-chhHhhccccHHHhcc---cC
Confidence 46777775 678986 469999999999999999999999987 799999987533 4578888888876421 23
Q ss_pred CCcEEEEEeeecccc-CC-cccchhhHHhhhhhhchhhhhccccccCCCCCCcchHHHHHHHHHHHHHh--cCCCCC---
Q psy8450 297 QQVFYLIFCRSVWYF-PL-RLDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRA--ADMSHP--- 369 (525)
Q Consensus 297 ~~~~~l~frr~~~~~-p~-~~d~~~~~~l~y~Q~~~d~l~G~~~~~~~~~~p~~~~~~~~~LaAl~~~~--~d~~~~--- 369 (525)
+.+|+|+||+++|.. |. .+.+++++.++|.|+++||++|+++| +.++++.||||++++ ||++..
T Consensus 73 ~~~~~L~FRvkfy~~~~~~~l~d~~t~~LlYlQvk~dIl~G~l~c---------~~e~a~~LAAL~lQae~GDy~~~~~~ 143 (575)
T 2i1j_A 73 ENPLQFKFRAKFYPEDVADELIQEITLKLFYLQVKNAILSDEIYC---------PPETSVLLASYAVQARHGDHNPAVHG 143 (575)
T ss_dssp CSSEEEEEEESSCCSSHHHHCCSHHHHHHHHHHHHHHHHTTSSCC---------CHHHHHHHHHHHHHHHHCSCCTTTCC
T ss_pred CCCeEEEEEEEEcCCChhhhcCCHHHHHHHHHHHHHHHhCCCCCC---------CHHHHHHHHHHHHHHHhcCCChhhcc
Confidence 568999999999975 32 34557899999999999999999998 679999999999875 777643
Q ss_pred CChhhhhhccCcccccccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCCceEEEEEeeCC-eEEEEEccC
Q psy8450 370 PAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLFGSSFFAIKRNGD-QQILALNKH 448 (525)
Q Consensus 370 ~~~~~l~~~lP~~~~~~~~~~~~~w~~~I~~~~~~l~g~s~~~Ak~~fL~~~~~~p~yGs~~F~v~~~~~-~~~LaIn~~ 448 (525)
+.+-....|+|..++...+.++++|.+.|...|+++.|+|+.+|+..||+++++||+||++||.|+...+ ++|||||+.
T Consensus 144 ~~yl~~~~~lP~~vl~~~~~s~e~~~~~I~~~hk~l~G~s~~eA~~~yL~~a~~lp~YG~~~F~vkd~~g~~l~LGV~~~ 223 (575)
T 2i1j_A 144 PGFLANDRLLPQRVTDQHKMSREEWEQSITNWWQEHRGMLREDAMMEYLKIAQDLEMYGVNYFEIRNKKNTELWLGVDAL 223 (575)
T ss_dssp TTTTTTCCCSCHHHHHTBCCCHHHHHHHHHHHHGGGTTCCHHHHHHHHHHHHTTSTTTTCEEEEEECTTCCEEEEEECSS
T ss_pred cccccccccCCHHHHhhcCCCHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhccccCCEEEEEEecCCCEEEEEEcCC
Confidence 2233347899999876445678999999999999999999999999999999999999999999997666 999999999
Q ss_pred ceEEeecCcc-ceEEEeecccceeccccccCCCceEEEEEecccccceEEEEeccc---HHHHHHHHHHHHHHHhhh
Q psy8450 449 GVHFLNLLTH-ETISSVPYGDVISTRKVRAESGTLYLEMKCGNLFQQRVARIQTDQ---AHEIARLIRQYMSLDRQK 521 (525)
Q Consensus 449 Gi~~l~~~tk-~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~~~~~~~~~~t~q---a~ei~~LI~~Yi~~~~~~ 521 (525)
||++++++++ .++.+|||++|.+|.. +. -.|.|.+++. ....+.|.|++ +..|..|+.+|...+...
T Consensus 224 GI~v~~~~~k~~~l~~f~w~~I~~isf---~~--k~F~I~~~~~-~~~~l~F~t~~~~~ak~i~~lc~~~H~ff~~~ 294 (575)
T 2i1j_A 224 GLNIYEKDDKLTPKIGFPWSEIRNISF---ND--RKFIIKPIDK-KAPDFVFFAPRVRVNKRILALCMGNHELYMRR 294 (575)
T ss_dssp EEEEEETTCSSSCSEEEEGGGEEEEEE---ET--TEEEEEESCT-TSCCEEEECSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEeCCCCcccceEecHHHhhcccC---CC--CeEEEEEccC-CcceeEEEeCCchhHHHHHHHHHHHHHHHHHc
Confidence 9999999987 6788999999998753 22 3566666653 34579999987 678899999999988754
No 9
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=100.00 E-value=1.4e-36 Score=303.75 Aligned_cols=266 Identities=14% Similarity=0.123 Sum_probs=211.5
Q ss_pred CCceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhhhhHHHhhcC
Q psy8450 218 RNSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHKNQ 297 (525)
Q Consensus 218 ~~~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl~~~e~~~ 297 (525)
+++.+. |+|+||+...+.|+++||++|+++.||++|||.+. ++|||++..+++ ..++|+++..+.|.+. +
T Consensus 16 ~~~~~~-V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~---~~FgL~~~~~~~-~~~wLd~~k~i~~q~~-----~ 85 (296)
T 3qij_A 16 FQGHCK-VSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEE---DYFGLAIWDNAT-SKTWLDSAKEIKKQVR-----G 85 (296)
T ss_dssp -CCEEE-EECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSG---GGEEEEEEEETT-EEEECCTTSBHHHHC-------
T ss_pred ceEEEE-EEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCc---ceeEEEEEcCCC-ccchhccchhHHHhcC-----C
Confidence 346666 57899999999999999999999999999999987 899999987533 4678988888887653 4
Q ss_pred CcEEEEEeeeccc-cCCcccchhhHHhhhhhhchhhhhccccccCCCCCCcchHHHHHHHHHHHHHh--cCCCCC---CC
Q psy8450 298 QVFYLIFCRSVWY-FPLRLDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRA--ADMSHP---PA 371 (525)
Q Consensus 298 ~~~~l~frr~~~~-~p~~~d~~~~~~l~y~Q~~~d~l~G~~~~~~~~~~p~~~~~~~~~LaAl~~~~--~d~~~~---~~ 371 (525)
.+++|+||+++|. +|....++.++.++|.|+++|+++|+++| +.+++++|||+++|+ ||++.. +.
T Consensus 86 ~~~~l~frvkfy~~~~~~l~~~~tr~l~ylQ~~~dil~G~~~c---------~~e~a~~LAAl~~Qae~Gd~~~~~~~~~ 156 (296)
T 3qij_A 86 VPWNFTFNVKFYPPDPAQLTEDITRYYLCLQLRQDIVAGRLPC---------SFATLALLGSYTIQSELGDYDPELHGVD 156 (296)
T ss_dssp -CCEEEEEESSCCSCGGGSSCHHHHHHHHHHHHHHHHHTSSCC---------CHHHHHHHHHHHHHHHHCSCCHHHHTTC
T ss_pred CCcEEEEEEEEeCCCchhccCHHHHHHHHHHHHHHHHcCCCCC---------CHHHHHHHHHHHHHHhcCCCCccccchh
Confidence 6799999999997 46655668899999999999999999998 779999999999986 676531 11
Q ss_pred hhhhhhccCcccccccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCCceEEEEEeeCC-eEEEEEccCce
Q psy8450 372 MKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLFGSSFFAIKRNGD-QQILALNKHGV 450 (525)
Q Consensus 372 ~~~l~~~lP~~~~~~~~~~~~~w~~~I~~~~~~l~g~s~~~Ak~~fL~~~~~~p~yGs~~F~v~~~~~-~~~LaIn~~Gi 450 (525)
+-....|+|.. .++|++.|.+.|++++|+|+.+|+..||+++++||+||++||.|++..+ +++||||..||
T Consensus 157 yl~~~~~~P~~--------~~~~~~~I~~~h~~~~g~s~~eA~~~yL~~a~~l~~yG~~~f~vk~~~~~~~~LgV~~~Gi 228 (296)
T 3qij_A 157 YVSDFKLAPNQ--------TKELEEKVMELHKSYRSMTPAQADLEFLENAKKLSMYGVDLHKAKDLEGVDIILGVCSSGL 228 (296)
T ss_dssp CCTTSCCSSSC--------CHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHTTSTTTTCEEEEEECTTSCEEEEEECSSEE
T ss_pred hCcHhhcCCcC--------HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhcccccCceEEEEEcCCCCEEEEEECCCeE
Confidence 11123445542 3689999999999999999999999999999999999999999998766 89999999999
Q ss_pred EEeecCccceEEEeecccceeccccccCCCceEEEEEeccccc---ceEEEEecccHHHHHHHHHHHHHH
Q psy8450 451 HFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNLFQ---QRVARIQTDQAHEIARLIRQYMSL 517 (525)
Q Consensus 451 ~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~~~---~~~~~~~t~qa~ei~~LI~~Yi~~ 517 (525)
++++++++ +..|||++|.+|.. +.+ .|.|.+++... ..++.|.++....--.|.+-.+..
T Consensus 229 ~v~~~~~k--l~~f~w~~I~~~s~---~~k--~F~i~~~~~~~~~~~~~~~f~~~~~~~~k~l~~~c~~~ 291 (296)
T 3qij_A 229 LVYKDKLR--INRFPWPKVLKISY---KRS--SFFIKIRPGEQEQYESTIGFKLPSYRAAKKLWKVCVEH 291 (296)
T ss_dssp EEEETTEE--EEEEEGGGEEEEEE---ETT--EEEEEEC-------CEEEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEeCCCe--EEEEEhhhcCEEEe---cCC--EEEEEEecCccCCccceEEEECCCHHHHHHHHHHHHHh
Confidence 99998864 88999999999753 233 35555543221 357888888776666666555543
No 10
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=100.00 E-value=1.1e-36 Score=313.71 Aligned_cols=299 Identities=16% Similarity=0.179 Sum_probs=244.7
Q ss_pred HHHHHHHcCCCceeeEEec-----CCCcEEEEEeCCcchHHHHHHHHH--HHhCCCCCCCCcceEEEEEEcCCceeecCC
Q psy8450 209 EEVTAVSAGRNSKRQLYRL-----PGGSETVINTKSTTVVEDICIEMC--QLINVNNDLEMEEFSLYCIVEGDAFTMPLA 281 (525)
Q Consensus 209 ~Ei~a~~~~~~~~~~iv~l-----pdg~~~~v~v~s~tt~~ev~~~i~--~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~ 281 (525)
.|++++.. ....|.+| |||+.++|.+|++|||+||+..|| .++|+.... .++|||+.........++|+
T Consensus 14 ~~~~~~~~---~~~~~~~~~~~~~~~~~~k~v~~d~~ttV~dVi~~i~~~~kiG~~i~~-~~~FgL~~~~~~~~~~~wL~ 89 (392)
T 4eku_A 14 VDVEKEDV---RILKVCFYSNSFNPGKNFKLVKCTVQTEIREIITSILLSGRIGPNIRL-AECYGLRLKHMKSDEIHWLH 89 (392)
T ss_dssp CCCCGGGE---EEEEEEECCSSSCGGGEEEEEEEETTCBHHHHHHHHHHTTTTCSSCCC-GGGEEEEEEESSSCCEEEEC
T ss_pred eeeeccee---eeEEEEecccccCCCCCeEEEEeCCCCcHHHHHHHHHHHhhcCCCcCc-cceEEEEEEECCCCceEECC
Confidence 46666643 23344455 999999999999999999999999 688874321 28999999763222357899
Q ss_pred CcchhhhhhHHHhhcC--CcEEEEEeeecccc-CCc--ccchhhHHhhhhhhchhhhhcc-ccccCCCCCCcchHHHHHH
Q psy8450 282 KEEYILDVTTELHKNQ--QVFYLIFCRSVWYF-PLR--LDCQLYVQVLFNQIAPDYLEGL-LLVLPNEQIPQDIVYDVAK 355 (525)
Q Consensus 282 ~~~~i~Dvl~~~e~~~--~~~~l~frr~~~~~-p~~--~d~~~~~~l~y~Q~~~d~l~G~-~~~~~~~~~p~~~~~~~~~ 355 (525)
+++.+.|++.+|+... .+|++.||+++|.. +.. .+|++.++++|.|+++||++|. +.| +.+++++
T Consensus 90 ~~~~l~~v~~k~~~~~~~~~~~~~fRvrF~p~d~~~l~~~D~~~~~ylY~Q~r~D~l~g~~~~~---------~~e~al~ 160 (392)
T 4eku_A 90 PQMTVGEVQDKYECLHVEAEWRYDLQIRYLPEDFMESLKEDRTTLLYFYQQLRNDYMQRYASKV---------SEGMALQ 160 (392)
T ss_dssp TTSBHHHHHHHSTTTSCGGGEEEEEEECSCCTTTHHHHTTCHHHHHHHHHHHHHHHHHHTTTTS---------CHHHHHH
T ss_pred CCCcHHHHHhhhhhccCCCceEEEEEEEEEcCCHHHhhhcChHHHHHHHHHHHHHHHcCCCCCC---------CHHHHHH
Confidence 9999999999987643 58999999998765 332 2467889999999999999997 445 6689999
Q ss_pred HHHHHHHh--cCCCCCC-----Ch----h--hhhhccCcccccccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q psy8450 356 LAALLHRA--ADMSHPP-----AM----K--ETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILS 422 (525)
Q Consensus 356 LaAl~~~~--~d~~~~~-----~~----~--~l~~~lP~~~~~~~~~~~~~w~~~I~~~~~~l~g~s~~~Ak~~fL~~~~ 422 (525)
||||++++ +|+++.. +. + .+++|+|+.++. .++.+.|++.|.+.|+++.|+++.+||..||+.++
T Consensus 161 LAaL~~q~~~gd~~~~a~~~k~~~~~l~k~~~lk~flP~~l~~--~ik~k~~rk~I~~~~kk~~~ls~~eakl~YL~~l~ 238 (392)
T 4eku_A 161 LGCLELRRFFKDMPHNALDKKSNFELLEKEVGLDLFFPKQMQE--NLKPKQFRKMIQQTFQQYASLREEECVMKFFNTLA 238 (392)
T ss_dssp HHHHHHHHHTTTSCTTGGGSHHHHHHHHHHTCGGGTSCHHHHH--HSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhcchhhhccCCCHHHHhhhccHHHhcCHHHHh--hcCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 99999864 6776432 11 1 377899999865 66788999999999999999999999999999999
Q ss_pred cCCCCCceEEEEEeeCC---eEEEEEccCceEEeecCccceEEEeecccceeccccccCCCceEEEEEecccccceEEEE
Q psy8450 423 KWPLFGSSFFAIKRNGD---QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNLFQQRVARI 499 (525)
Q Consensus 423 ~~p~yGs~~F~v~~~~~---~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~~~~~~~~~ 499 (525)
+||+||+++|.|+..++ ++.|+|+.+||++++++++++...++|++|.+|...+.+++..+|+|..++..++.++.|
T Consensus 239 ~Lp~yG~e~F~vk~~s~~~~~~~L~Vg~~GIs~~~~k~~~~~~~~~f~~I~~Is~~~~s~~~~~v~I~~~~~~~~l~~~~ 318 (392)
T 4eku_A 239 GFANIDQETYRCELIQGWNITVDLVIGPKGIRQLTSQDAKPTCLAEFKQIRSIRCLPLEEGQAVLQLGIEGAPQALSIKT 318 (392)
T ss_dssp TSSCCSCEEEEEEEESSSCCCEEEEEETTEEEEECSSCSCCEEEECGGGBCCCCEEEETTTEEEEEECBTTCSSCEEEEE
T ss_pred hhhccCcEEEEEEeccCCcceeEEEEcCCcEEEECCCCCceeEEechHHceEEEEEeccCCceEEEEEECCCCcceEEEe
Confidence 99999999999998655 556666667999999999999999999999999876655677899999987766789999
Q ss_pred ec-ccHHHHHHHHHHHHHHHhhhc
Q psy8450 500 QT-DQAHEIARLIRQYMSLDRQKN 522 (525)
Q Consensus 500 ~t-~qa~ei~~LI~~Yi~~~~~~~ 522 (525)
+| ++|+.|++||++|+++.+.++
T Consensus 319 ~s~~~A~~~~~LidGY~RL~~d~~ 342 (392)
T 4eku_A 319 SSLAEAENMADLIDGYCRLQGEHQ 342 (392)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSSSS
T ss_pred CCHHHHHHHHHHHHHHHhhccCCC
Confidence 99 899999999999999988753
No 11
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus}
Probab=100.00 E-value=4.1e-32 Score=260.53 Aligned_cols=186 Identities=18% Similarity=0.256 Sum_probs=159.5
Q ss_pred cchhhHHhhhhhhchhhhhccccccCCCCCCcchHHHHHHHHHHHHHh--cCCCCC---CChhhhhhccCcccccccCCC
Q psy8450 316 DCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRA--ADMSHP---PAMKETKFLLPKPALTQRDIK 390 (525)
Q Consensus 316 d~~~~~~l~y~Q~~~d~l~G~~~~~~~~~~p~~~~~~~~~LaAl~~~~--~d~~~~---~~~~~l~~~lP~~~~~~~~~~ 390 (525)
.|+++++++|.|+++||++|+++| +.+++++||||++|+ ||++.. +....+.+|+|++++.
T Consensus 24 ~Dp~~l~l~ylQ~~~dil~G~~~~---------~~e~a~~LAal~~Qae~Gd~~~~~~~~~~~~l~~~lP~~~~~----- 89 (222)
T 4f7g_A 24 RDPVQLNLLYVQARDDILNGSHPV---------SFDKACEFAGFQCQIQFGPHNEQKHKAGFLDLKDFLPKEYVK----- 89 (222)
T ss_dssp --CCHHHHHHHHHHHHHHTTSSCC---------CHHHHHHHHHHHHHHHHCSCCTTTSCSSCSCGGGTSCGGGGG-----
T ss_pred CCHHHHHHHHHHHHHHHhCCcccC---------CHHHHHHHHHHHHHHHHCCCCchhcccCccchhhccCHHHHh-----
Confidence 347899999999999999999998 779999999999986 776642 3345789999999764
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCCceEEEEEeeC-C-----eEEEEEccCceEEeecCccceEEEe
Q psy8450 391 PAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLFGSSFFAIKRNG-D-----QQILALNKHGVHFLNLLTHETISSV 464 (525)
Q Consensus 391 ~~~w~~~I~~~~~~l~g~s~~~Ak~~fL~~~~~~p~yGs~~F~v~~~~-~-----~~~LaIn~~Gi~~l~~~tk~~l~~~ 464 (525)
..|++.|.+.|++++|+|+.+|+..||+++++||+||++||.|+... + +++||||++||+++++++++++..+
T Consensus 90 -~~~~~~I~~~h~~~~g~s~~eA~~~yL~~~~~l~~yG~~~f~v~~~~~g~~~~~~~~LgI~~~GI~v~~~~tk~~l~~~ 168 (222)
T 4f7g_A 90 -QKGERKIFQAHKNCGQMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEW 168 (222)
T ss_dssp -GCCHHHHHHHHHTTTTCCHHHHHHHHHHHHHTSTTTTCEEEEEEEECTTSSCEEEEEEEECSSEEEEECTTTCCEEEEE
T ss_pred -hhhHHHHHHHHHhccCCCHHHHHHHHHHHHhhccccCcEEEEEEEecCCCCCCCCEEEEEcCCcEEEEcCCCCceeEec
Confidence 22578999999999999999999999999999999999999999865 2 7999999999999999999999999
Q ss_pred ecccceeccccccCCCceEEEEEecccccceEEEEecccHHHHHHHHHHHHHHHhhhc
Q psy8450 465 PYGDVISTRKVRAESGTLYLEMKCGNLFQQRVARIQTDQAHEIARLIRQYMSLDRQKN 522 (525)
Q Consensus 465 ~~~~I~s~~~~~~~~~~~~~~i~~g~~~~~~~~~~~t~qa~ei~~LI~~Yi~~~~~~~ 522 (525)
||++|.+|+.. ...|.|.+|+..++ .+.|+|+||++|++||++||++++.++
T Consensus 169 ~~~~I~~~~~~-----~~~f~I~~~~~~~~-~~~~~T~q~~~I~~Li~~Yi~~~~~~r 220 (222)
T 4f7g_A 169 SLTNIKRWAAS-----PKSFTLDFGDYQDG-YYSVQTTEGEQIAQLIAGYIDIILKKK 220 (222)
T ss_dssp EGGGCCEEEEC-----SSEEEEECCTTSSS-CEEEECSCHHHHHHHHHHHHHHTC---
T ss_pred cHHHeeeeccC-----CCEEEEEECCccce-EEEEECCcHHHHHHHHHHHHHHHHHhh
Confidence 99999998632 24578888876544 699999999999999999999998765
No 12
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B
Probab=99.97 E-value=9.8e-31 Score=248.18 Aligned_cols=183 Identities=19% Similarity=0.261 Sum_probs=159.1
Q ss_pred ccchhhHHhhhhhhchhhhhccccccCCCCCCcchHHHHHHHHHHHHHh--cCCCC---CCChhhhhhccCcccccccCC
Q psy8450 315 LDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRA--ADMSH---PPAMKETKFLLPKPALTQRDI 389 (525)
Q Consensus 315 ~d~~~~~~l~y~Q~~~d~l~G~~~~~~~~~~p~~~~~~~~~LaAl~~~~--~d~~~---~~~~~~l~~~lP~~~~~~~~~ 389 (525)
.+|+.++.++|.|+++||++|+++| +.+++++||||++|+ ||++. .+....+.+|+|++++. ..
T Consensus 12 ~~d~~~~~l~y~Q~~~dil~g~~~~---------~~~~a~~Laal~~qa~~Gd~~~~~~~~~~~~~~~~lP~~~~~--~~ 80 (206)
T 1mix_A 12 SRDPVQLNLLYVQARDDILNGSHPV---------SFDKACEFAGYQCQIQFGPHNEQKHKPGFLELKDFLPKEYIK--QK 80 (206)
T ss_dssp TSCHHHHHHHHHHHHHHHHTTSSCC---------CHHHHHHHHHHHHHHHHCSCCTTTSCTTCSCGGGTSCGGGST--TC
T ss_pred cCCHHHHHHHHHHHHHHHHCCcccc---------CHHHHHHHHHHhhhheecCCCcccccCCccchHhhCCHHHhh--cc
Confidence 4568999999999999999999998 779999999999886 77764 24445688999999865 22
Q ss_pred CHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCCceEEEEEeeC-C-----eEEEEEccCceEEeecCccceEEE
Q psy8450 390 KPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLFGSSFFAIKRNG-D-----QQILALNKHGVHFLNLLTHETISS 463 (525)
Q Consensus 390 ~~~~w~~~I~~~~~~l~g~s~~~Ak~~fL~~~~~~p~yGs~~F~v~~~~-~-----~~~LaIn~~Gi~~l~~~tk~~l~~ 463 (525)
+ ++.|.+.|++++|+|+.+|+..||+++++||+||+++|.|+... + +++||||.+||+++++++++++.+
T Consensus 81 ~----~~~i~~~~~~~~g~s~~~A~~~yL~~~~~l~~yG~~~f~v~~~~~g~~~~~~~~Lgi~~~Gi~~~~~~~~~~l~~ 156 (206)
T 1mix_A 81 G----ERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQE 156 (206)
T ss_dssp C----HHHHHHHHHHTTTCCHHHHHHHHHHHHHHSTTTTCEEEEEEECCSSCSSCEEEEEEECSSEEEEEETTTCCEEEE
T ss_pred c----HHHHHHHHHHccCCCHHHHHHHHHHHHHhCcccCceEEEEEEccCCCCCcCcEEEEEcccceEEeCCCCCceeee
Confidence 2 68999999999999999999999999999999999999999764 2 899999999999999999999999
Q ss_pred eecccceeccccccCCCceEEEEEecccccceEEEEecccHHHHHHHHHHHHHHH
Q psy8450 464 VPYGDVISTRKVRAESGTLYLEMKCGNLFQQRVARIQTDQAHEIARLIRQYMSLD 518 (525)
Q Consensus 464 ~~~~~I~s~~~~~~~~~~~~~~i~~g~~~~~~~~~~~t~qa~ei~~LI~~Yi~~~ 518 (525)
+||++|.+|+. + ...|.|.+|+..++ .+.|+|++|++|++||++||+++
T Consensus 157 ~~~~~I~~~~~---~--~~~f~i~~~~~~~~-~~~~~t~~~~~i~~Li~~Yi~~~ 205 (206)
T 1mix_A 157 WSLTNIKRWAA---S--PKSFTLDFGDYQDG-YYSVQTTEGEQIAQLIAGYIDII 205 (206)
T ss_dssp EEGGGCCEEEE---C--SSEEEEECGGGSSS-CEEEECSCHHHHHHHHHTTSCCC
T ss_pred eehhHeeeccc---C--CCEEEEEeCcccce-EEEEECCcHHHHHHHHHHHHHHh
Confidence 99999999864 2 24577888876543 79999999999999999999764
No 13
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=99.90 E-value=1.1e-21 Score=217.02 Aligned_cols=282 Identities=17% Similarity=0.157 Sum_probs=221.1
Q ss_pred EecCCCc----EEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhhhhHHHhhc--CC
Q psy8450 225 YRLPGGS----ETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHKN--QQ 298 (525)
Q Consensus 225 v~lpdg~----~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl~~~e~~--~~ 298 (525)
|+++||. ...|.++..||++|++..||+++||... ++|||..........+||+++..+.++..+.++. ..
T Consensus 12 ~~~~~~~~~~~~~~v~~~~~~~~~~i~~~v~~~l~i~~~---~~fgL~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~ 88 (656)
T 2j0j_A 12 YFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNV---ACYGLRLSHLQSEEVHWLHLDMGVSNVREKFELAHPPE 88 (656)
T ss_dssp CCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCG---GGEEEEEEESSSCCEEEECTTSBHHHHHHHHTTTSCTT
T ss_pred EeccCCCCCCceeEEEeCCCCcHHHHHHHHHHhcCccee---eeEEEEEeecccCceeeeCCCCcHHHHHhhhcccCCCc
Confidence 5788887 9999999999999999999999999776 7999998875222356788999988887776543 36
Q ss_pred cEEEEEeeecccc-CCc--ccchhhHHhhhhhhchhhhhcccc-ccCCCCCCcchHHHHHHHHHHHHH--hcCCCCCCC-
Q psy8450 299 VFYLIFCRSVWYF-PLR--LDCQLYVQVLFNQIAPDYLEGLLL-VLPNEQIPQDIVYDVAKLAALLHR--AADMSHPPA- 371 (525)
Q Consensus 299 ~~~l~frr~~~~~-p~~--~d~~~~~~l~y~Q~~~d~l~G~~~-~~~~~~~p~~~~~~~~~LaAl~~~--~~d~~~~~~- 371 (525)
+|++.||.++|.. |.. .+|..++.++|.|++.||++|+.. | ..++++.||||..+ .+|+++...
T Consensus 89 ~~~~~~rvrf~p~~~~~l~~~d~~~~~ylf~Q~r~D~~~~~~~~~---------~~~~al~La~l~~~~~~~d~~~~a~~ 159 (656)
T 2j0j_A 89 EWKYELRIRYLPKGFLNQFTEDKPTLNFFYQQVKNDYMLEIADQV---------DQEIALKLGCLEIRRSYGEMRGNALE 159 (656)
T ss_dssp SEEEEEEECCCCTTHHHHHHTCHHHHHHHHHHHHHHHHHHTGGGS---------CHHHHHHHHHHHHHHHTTTSCTTGGG
T ss_pred ceEEEEEEEEcCCCHHHHHhccHHHHHHHHHHHHHHHHhcccccc---------cHhHHHHHHHHHHHHHhhhccchhhh
Confidence 8999999999975 432 245678999999999999999875 4 67999999999875 378765421
Q ss_pred ----h----h--hhhhccCcccccccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCCceEEEEEeeCC--
Q psy8450 372 ----M----K--ETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLFGSSFFAIKRNGD-- 439 (525)
Q Consensus 372 ----~----~--~l~~~lP~~~~~~~~~~~~~w~~~I~~~~~~l~g~s~~~Ak~~fL~~~~~~p~yGs~~F~v~~~~~-- 439 (525)
. + .++.|+|+.++. ..+...++++|.+.|+++.++++.+|+..||+.+...+.||...|.|+..++
T Consensus 160 ~~~~~~~~~k~~~~~~fiP~~~~~--~~~~~~~~k~i~~~~k~~~~~~~~~~~lk~l~~l~~~~~yg~e~f~~~~~~g~~ 237 (656)
T 2j0j_A 160 KKSNYEVLEKDVGLRRFFPKSLLD--SVKAKTLRKLIQQTFRQFANLNREESILKFFEILSPVYRFDKECFKCALGSSWI 237 (656)
T ss_dssp SHHHHHHHHHTTTGGGTSCHHHHH--HSCHHHHHHHHHHHHGGGTTCCHHHHHHHHHHHHGGGCCTTSEEEEEEEESSSE
T ss_pred cCCCHHHHHhhccHHHhCCHHHHH--HhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccccccCceEEeeccCCCCc
Confidence 1 1 247899999865 6777889999999999999999999999999999999999999999998766
Q ss_pred -eEEEEEccC-ceEEeecCccceEEEeecccceecccccc--CCCceEEEEEecccccceEEEEec-ccHHHHHHHHHHH
Q psy8450 440 -QQILALNKH-GVHFLNLLTHETISSVPYGDVISTRKVRA--ESGTLYLEMKCGNLFQQRVARIQT-DQAHEIARLIRQY 514 (525)
Q Consensus 440 -~~~LaIn~~-Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~--~~~~~~~~i~~g~~~~~~~~~~~t-~qa~ei~~LI~~Y 514 (525)
++-|.|+.+ ||.....+...+-....|++|.++..... ..+.-.+.+......+...+.+.+ ..|+.+++|+.+|
T Consensus 238 ~~~~l~vg~~~GI~~~~~~~~~~~~~~~f~~I~~I~~~~~~~~~~k~~~~~~~~~~~~~l~i~~~s~~~ae~~a~LidGy 317 (656)
T 2j0j_A 238 ISVELAIGPEEGISYLTDKGANPTHLADFNQVQTIQYSNSEDKDRKGMLQLKIAGAPEPLTVTAPSLTIAENMADLIDGY 317 (656)
T ss_dssp EEEEEEEETTTEEEECCSSSSCCEEEECGGGEEEBCEEECSSSSCCEEEEEEESSCSSCEEEEESSHHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCeEEECCCCCCceecccccceeEEEEeeccccCCcceEEEEeccCCcceEEECCCchhhHHHHHhhcce
Confidence 366666665 99988776667777899999999854422 122234444444333444555544 3699999999999
Q ss_pred HHHHhh
Q psy8450 515 MSLDRQ 520 (525)
Q Consensus 515 i~~~~~ 520 (525)
+++..+
T Consensus 318 ~rL~~~ 323 (656)
T 2j0j_A 318 CRLVNG 323 (656)
T ss_dssp HHHHSC
T ss_pred eeeecc
Confidence 998764
No 14
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=98.92 E-value=2.3e-09 Score=87.09 Aligned_cols=88 Identities=13% Similarity=0.092 Sum_probs=76.1
Q ss_pred CceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhhhhHHHhhcCC
Q psy8450 219 NSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHKNQQ 298 (525)
Q Consensus 219 ~~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl~~~e~~~~ 298 (525)
+..+. |++.||+.+++.|++..||+|||+.++.+.++... .+|+|++..++=.++|.+.++|+++|+++.|+. +.
T Consensus 9 k~vvk-vf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~---~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~-~s 83 (100)
T 1wgr_A 9 PHVVK-VYSEDGACRSVEVAAGATARHVCEMLVQRAHALSD---ETWGLVECHPHLALERGLEDHESVVEVQAAWPV-GG 83 (100)
T ss_dssp CEEEE-EEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCC---CCCCEEEEETTTTEEEEECSSSCHHHHHTTSCS-SS
T ss_pred CEEEE-EEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCC---CCeEEEEecCCCCcEEeccCchhHHHHHhhCcc-CC
Confidence 34556 45789999999999999999999999999999987 799999998765678999999999999999976 45
Q ss_pred cEEEEEeeecccc
Q psy8450 299 VFYLIFCRSVWYF 311 (525)
Q Consensus 299 ~~~l~frr~~~~~ 311 (525)
+.+|+|+++++..
T Consensus 84 ~nr~~F~kr~~Ky 96 (100)
T 1wgr_A 84 DSRFVFRKNFASG 96 (100)
T ss_dssp CCEEEECSCCSSS
T ss_pred CcEEEEecchhcc
Confidence 5689999987653
No 15
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=98.31 E-value=1.1e-06 Score=85.68 Aligned_cols=83 Identities=11% Similarity=0.116 Sum_probs=71.9
Q ss_pred ceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhhhhHHHhhcCCc
Q psy8450 220 SKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHKNQQV 299 (525)
Q Consensus 220 ~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl~~~e~~~~~ 299 (525)
..+.| ++.||+.+++.|++.+||+||++.++.+.++.+. .+|+||+..++..++|+|.++|+|.|++..|+.. ..
T Consensus 32 ~ivkv-~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~---~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~d-s~ 106 (281)
T 4gmv_A 32 LVIRV-HMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYS---LDWSLVETVSELQMERIFEDHENLVENLLNWTRD-SQ 106 (281)
T ss_dssp EEEEE-EETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCC---TTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCTT-CC
T ss_pred EEEEE-EecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCC---CCeEEEEEcCCccceeccccchhHHHHHHhcccC-CC
Confidence 44664 5789999999999999999999999999998876 7999999998777899999999999999999873 44
Q ss_pred EEEEEeee
Q psy8450 300 FYLIFCRS 307 (525)
Q Consensus 300 ~~l~frr~ 307 (525)
.+|+|+++
T Consensus 107 n~l~f~~~ 114 (281)
T 4gmv_A 107 NKLIFMER 114 (281)
T ss_dssp CEEEEECC
T ss_pred ceEEEEec
Confidence 57888764
No 16
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=97.87 E-value=2.4e-05 Score=75.21 Aligned_cols=80 Identities=13% Similarity=0.189 Sum_probs=63.7
Q ss_pred eeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhhhhHHHhhcCCcE
Q psy8450 221 KRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHKNQQVF 300 (525)
Q Consensus 221 ~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl~~~e~~~~~~ 300 (525)
.+. |+..||+.+++.|++.+||+||++.++.+-+..+. ..|+|++..++..++|+|.++|.|.|++..|. .+-
T Consensus 10 ivk-v~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~---~~W~l~E~~~~l~lER~ledhE~V~ev~~~~~---s~~ 82 (256)
T 3hk0_A 10 DVK-VFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDD---NSWTLVEHHPHLGLERCLEDHELVVQVESTMA---SES 82 (256)
T ss_dssp EEE-EEETTSCEEEEEECTTCBHHHHHHHHHCCC----------EEEEEEETTTTEEEECCTTSBHHHHHHTCC---SSC
T ss_pred EEE-EEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCC---CCEEEEEECCCcccccccccchhHHHHHhccC---CCc
Confidence 345 45789999999999999999999999998777665 79999999988889999999999999998774 345
Q ss_pred EEEEeee
Q psy8450 301 YLIFCRS 307 (525)
Q Consensus 301 ~l~frr~ 307 (525)
+|+|+++
T Consensus 83 ~l~f~k~ 89 (256)
T 3hk0_A 83 KFLFRKN 89 (256)
T ss_dssp EEEEEEC
T ss_pred eEEEecc
Confidence 7888875
No 17
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.69 E-value=0.00015 Score=61.54 Aligned_cols=45 Identities=24% Similarity=0.459 Sum_probs=40.6
Q ss_pred EEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEE
Q psy8450 224 LYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIV 271 (525)
Q Consensus 224 iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~ 271 (525)
.+.+|||+...+.||.+.+|.+++..||.++||.+. ++|+|....
T Consensus 15 kV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~---~ey~L~~~~ 59 (128)
T 2kc2_A 15 KIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNH---DEYSLVREL 59 (128)
T ss_dssp EEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCC---SSEEEEEEC
T ss_pred EEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCc---ccccccccc
Confidence 467999999999999999999999999999999987 579997654
No 18
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=97.55 E-value=0.00023 Score=69.90 Aligned_cols=83 Identities=10% Similarity=0.195 Sum_probs=69.8
Q ss_pred ceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhhhhHHHhhcCCc
Q psy8450 220 SKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHKNQQV 299 (525)
Q Consensus 220 ~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl~~~e~~~~~ 299 (525)
..+.+ +.+||+.+.+.|++.+|+.||++.++.+.++... ..|+|+++..+..++++|.++++++|++..|... ..
T Consensus 35 ~~v~v-~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~---~~~~l~E~~~~~~ler~l~d~E~v~~v~~~w~~~-~~ 109 (291)
T 3tca_A 35 LVVKV-HMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCN---VDWCLYEIYPELQIERVFEDHENVVEVLSDWTRD-TE 109 (291)
T ss_dssp EEEEE-ECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCC---TTEEEEEEETTTTEEEECCTTSBHHHHHTTSCTT-CC
T ss_pred eEEEE-EcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCC---CCeEEEEeccccccceecccchhHHHHHHhhccc-cc
Confidence 44554 5899999999999999999999999999999876 6899999987777899999999999999988653 33
Q ss_pred EEEEEeee
Q psy8450 300 FYLIFCRS 307 (525)
Q Consensus 300 ~~l~frr~ 307 (525)
-.+.|++.
T Consensus 110 ~~l~~~~~ 117 (291)
T 3tca_A 110 NKVLFLEK 117 (291)
T ss_dssp CEEEEEEC
T ss_pred cchhhhhh
Confidence 45667653
No 19
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=97.53 E-value=0.00016 Score=57.58 Aligned_cols=75 Identities=16% Similarity=0.176 Sum_probs=61.6
Q ss_pred EecCCCcEEE-EEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhhhhHHHhhcCCcEEEE
Q psy8450 225 YRLPGGSETV-INTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHKNQQVFYLI 303 (525)
Q Consensus 225 v~lpdg~~~~-v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl~~~e~~~~~~~l~ 303 (525)
|.+ ||..+. -.|+..||++||+..+|+..|.. ..|.|.+.-. ..+|.|.+++.+++++.+|-+...+.+|+
T Consensus 12 Vwv-~g~er~VsGvT~~TTC~DVV~aL~~~~G~~-----~~y~LvE~wR--g~ER~L~~~~r~l~~l~~wG~~~~eV~F~ 83 (95)
T 2cs4_A 12 VWV-DGVQRIVCGVTEVTTCQEVVIALAQAIGRT-----GRYTLIEKWR--DTERHLAPHENPIISLNKWGQYASDVQLI 83 (95)
T ss_dssp EEE-TTEEECCSSBCSSSCHHHHHHHHHHHHSCC-----SEEEEEEEET--TEEEECCSSSCHHHHHHTTGGGSTTCEEE
T ss_pred EEE-CCceeEEECCCCCCcHHHHHHHHHhccCCC-----ccEEEEEecC--CCeecCCCcccHHHHHHHhCcCCCceEEE
Confidence 345 555454 46899999999999999998853 4699998863 46899999999999999998888889999
Q ss_pred Eeee
Q psy8450 304 FCRS 307 (525)
Q Consensus 304 frr~ 307 (525)
+||.
T Consensus 84 Lr~~ 87 (95)
T 2cs4_A 84 LRRT 87 (95)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9875
No 20
>1wxa_A Afadin, AF-6 protein; RAS-binding domain, ubiquitin-like fold, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.15.1.5
Probab=97.23 E-value=0.0015 Score=54.83 Aligned_cols=80 Identities=14% Similarity=0.167 Sum_probs=65.6
Q ss_pred cCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEE---------cCCceeecCCCcchhhhhhHHHhhcC
Q psy8450 227 LPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIV---------EGDAFTMPLAKEEYILDVTTELHKNQ 297 (525)
Q Consensus 227 lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~---------~~~~~~~~L~~~~~i~Dvl~~~e~~~ 297 (525)
.++-.++++-+...|||.+|+.++.++.||.... .+.|.|.++. ..+..++.|.++|..+.++..|....
T Consensus 20 ~~~~~Yksvlvt~~tta~~vV~eaLekygL~~~~-~~~Y~LveV~~~~~~~~~~~~g~~ErvL~~~E~Pl~i~~~w~~~~ 98 (116)
T 1wxa_A 20 KPNIPYKTILLSTTDTADFAVAESLEKYGLEKEN-PKDYCIARVMLPPGAQHSDERGAKEIILDDDECPLQIFREWPSDK 98 (116)
T ss_dssp CSSSCCEEEECCSSCCHHHHHHHHHHHHTCSSSC-TTTEEEEEEECCSSCCSSSSTTCEEECCCSSCCHHHHHHTCCGGG
T ss_pred cCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCC-chheEEEEEECccccccccCCCceEEECCCCCCHHHHHHhccccC
Confidence 5677889999999999999999999999998632 3789999986 22346789999999999888886554
Q ss_pred CcEEEEEeee
Q psy8450 298 QVFYLIFCRS 307 (525)
Q Consensus 298 ~~~~l~frr~ 307 (525)
....|.+||+
T Consensus 99 g~~~F~Lrrr 108 (116)
T 1wxa_A 99 GILVFQLKRR 108 (116)
T ss_dssp CCEEEEEEEC
T ss_pred CceEEEEEec
Confidence 5778888886
No 21
>3ddc_B RAS association domain-containing family protein; oncogene, tumorsuppressor, ubiquitin fold, RAS effector, RAP rassf1, rassf5, RAPL, NORE1, GMPPNP; HET: GNP; 1.80A {Mus musculus}
Probab=97.06 E-value=0.0013 Score=57.50 Aligned_cols=79 Identities=19% Similarity=0.294 Sum_probs=58.8
Q ss_pred EecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE-EEc-CCceeecCCCcchhhhhhHHHhhcCCcEEE
Q psy8450 225 YRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC-IVE-GDAFTMPLAKEEYILDVTTELHKNQQVFYL 302 (525)
Q Consensus 225 v~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~-~~~-~~~~~~~L~~~~~i~Dvl~~~e~~~~~~~l 302 (525)
|++|.|+...+-|.|.||+.||++.+.++..+.+.. ..||||+ +.. |+...+-|.++|+-+=+--.|-..+...+|
T Consensus 81 fflP~gs~k~v~VsS~tTt~eVI~~LL~KFkV~dnP--~kFALye~vh~~gev~~RKL~d~E~PL~lrL~~Gp~e~~~~f 158 (163)
T 3ddc_B 81 FYLPLDAIKQMHISSTTTVSEVIQGLLDKFMVVDNP--QKFALFKRIHKDGQVLFQKLSIADYPLYLRLLAGPDTDVLSF 158 (163)
T ss_dssp EEEEEEEEEEEEEETTCCHHHHHHHHHHHTTCCSCG--GGEEEEEEEEETTEEEEEECCTTCCHHHHHHHHCSCTTTCEE
T ss_pred EECCCCceEEEEEccCCcHHHHHHHHHHHhcccCCh--hheEEEEEEccCCcEEEEECCCcCcCHhHHhhcCCCCCeEEE
Confidence 568999999999999999999999999999998863 7899999 554 333467888888754332234333344555
Q ss_pred EEe
Q psy8450 303 IFC 305 (525)
Q Consensus 303 ~fr 305 (525)
+++
T Consensus 159 vLk 161 (163)
T 3ddc_B 159 VLK 161 (163)
T ss_dssp EEE
T ss_pred Eec
Confidence 554
No 22
>2uwq_A Apoptosis-stimulating of P53 protein 2; ASPP2, ubiquitin-like, SH3-domain, cell cycle, ANK repeat, SH3-binding; NMR {Homo sapiens}
Probab=97.01 E-value=0.0011 Score=51.70 Aligned_cols=77 Identities=14% Similarity=0.238 Sum_probs=59.5
Q ss_pred ceeeEEecCCCcEEEE--EeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhhhhHHHhhcC
Q psy8450 220 SKRQLYRLPGGSETVI--NTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHKNQ 297 (525)
Q Consensus 220 ~~~~iv~lpdg~~~~v--~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl~~~e~~~ 297 (525)
+.+.| .+.|...... .|.+.||++||+ .+|+..|- ..|.|.+.-.| .+|+|.+++.+++++.+|-+..
T Consensus 7 mel~V-wv~g~er~v~~vgvT~~TTC~DVV-aL~~~~G~------~~~~LvE~WR~--~ER~L~~~er~l~~l~~WG~~~ 76 (86)
T 2uwq_A 7 MFLTV-YLSNNEQHFTEVPVTPETICRDVV-DLCKEPGE------SDCHLAEVWCG--SERPVADNERMFDVLQRFGSQR 76 (86)
T ss_dssp EEEEE-ECSSCSSCEEEEEECTTCBSHHHH-HHSCSSCS------SSCEEEEEETT--EEEEECTTCBHHHHHHHHCSCG
T ss_pred eEEEE-EecCCccEEEccCCCCCCcHHHHH-HHHHccCC------CcEEEEeeeCC--CcccCCCcccHHHHHHHHcccC
Confidence 44553 4555443333 799999999999 99987775 35889887643 6899999999999999997767
Q ss_pred CcEEEEEee
Q psy8450 298 QVFYLIFCR 306 (525)
Q Consensus 298 ~~~~l~frr 306 (525)
.+.+|++||
T Consensus 77 ~eV~F~Lr~ 85 (86)
T 2uwq_A 77 NEVRFFLRH 85 (86)
T ss_dssp GGCEEEEEC
T ss_pred CceEEEEec
Confidence 788888876
No 23
>1j0w_A Downstream of tyrosine kinase 5; beta strands, ALFA helix, transferase; 2.50A {Homo sapiens} SCOP: b.55.1.2
Probab=96.76 E-value=0.018 Score=46.86 Aligned_cols=78 Identities=9% Similarity=0.109 Sum_probs=62.8
Q ss_pred CeEEEEEccCceEEeecCc-cceEEEeecccceeccccccCCCceEEEEEeccc--ccceEEEEecccHHHHHHHHHHHH
Q psy8450 439 DQQILALNKHGVHFLNLLT-HETISSVPYGDVISTRKVRAESGTLYLEMKCGNL--FQQRVARIQTDQAHEIARLIRQYM 515 (525)
Q Consensus 439 ~~~~LaIn~~Gi~~l~~~t-k~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~--~~~~~~~~~t~qa~ei~~LI~~Yi 515 (525)
++.+|-|..+++.+.++.+ +.++..+||..|.+++.. .+ .|.+..|.- .-+..|.|+|.++++|.+++.+++
T Consensus 21 G~~~L~l~~~~l~L~~~~~~~~~l~~Wp~~~LRRyG~~---~~--~FsFEaGRrC~tG~G~f~F~~~~~~~If~~v~~ai 95 (103)
T 1j0w_A 21 GECALQITYEYICLWDVQNPRVKLISWPLSALRRYGRD---TT--WFTFEAGRMCETGEGLFIFQTRDGEAIYQKVHSAA 95 (103)
T ss_dssp EEEEEEECSSEEEEEESSSTTBEEEEEEGGGEEEEEEC---SS--EEEEEECSSSSSCSEEEEEECSCHHHHHHHHHHHH
T ss_pred ccEEEEECCCEEEEEecCCCCcceEEeeHHHHhhcCcc---CC--EEEEEeCCCCCCCCcEEEEEcCCHHHHHHHHHHHH
Confidence 3899999999999998876 468999999999998753 33 455555632 225689999999999999999999
Q ss_pred HHHhhh
Q psy8450 516 SLDRQK 521 (525)
Q Consensus 516 ~~~~~~ 521 (525)
..+.+.
T Consensus 96 ~a~~~~ 101 (103)
T 1j0w_A 96 LAIAEL 101 (103)
T ss_dssp HHSTTC
T ss_pred HHHHHh
Confidence 988764
No 24
>2v76_A Docking protein 1; alternative splicing, protein-binding, PTB domain, phosphorylation, adaptor protein; HET: PGE; 1.60A {Homo sapiens}
Probab=96.64 E-value=0.017 Score=47.43 Aligned_cols=76 Identities=14% Similarity=0.210 Sum_probs=59.3
Q ss_pred eEEEEEccCceEEeec----CccceEEEeecccceeccccccCCCceEEEEEecc--cccceEEEEecccHHHHHHHHHH
Q psy8450 440 QQILALNKHGVHFLNL----LTHETISSVPYGDVISTRKVRAESGTLYLEMKCGN--LFQQRVARIQTDQAHEIARLIRQ 513 (525)
Q Consensus 440 ~~~LaIn~~Gi~~l~~----~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~--~~~~~~~~~~t~qa~ei~~LI~~ 513 (525)
+.+|-|....+.+.++ ++++.+..+||..|.+++. +.+ .|.+..|. ..-+..|.|.|.++.+|.++|..
T Consensus 24 ~y~L~v~~~~l~L~~~~~~~~~~~~~~~Wp~~~LRryG~---d~~--~FsFEaGRrc~tG~G~f~F~~~~~~~If~~l~~ 98 (107)
T 2v76_A 24 SYVLRVEAERLTLLTVGAQSQILEPLLSWPYTLLRRYGR---DKV--MFSFEAGRRCPSGPGTFTFQTAQGNDIFQAVET 98 (107)
T ss_dssp EEEEEECSSEEEEEEEC----CEEEEEEEEGGGEEEEEE---CSS--EEEEEECTTSTTCSEEEEEECSCHHHHHHHHHH
T ss_pred cEEEEEcCCEEEEEecCccCCCCceeEEEEhHHhhhcCc---cCC--EEEEEecCCCCCCCcEEEEEeCCHHHHHHHHHH
Confidence 8999999999999874 4578999999999999875 233 45555663 22356999999999999999999
Q ss_pred HHHHHhh
Q psy8450 514 YMSLDRQ 520 (525)
Q Consensus 514 Yi~~~~~ 520 (525)
+|+...+
T Consensus 99 ~i~~~k~ 105 (107)
T 2v76_A 99 AIHRQKA 105 (107)
T ss_dssp HHHHC--
T ss_pred HHHhhhh
Confidence 9876543
No 25
>1p5t_A DOK1, docking protein 1; signaling protein; 2.35A {Mus musculus} SCOP: b.55.1.2 PDB: 1uef_A*
Probab=96.50 E-value=0.035 Score=46.81 Aligned_cols=77 Identities=16% Similarity=0.200 Sum_probs=61.6
Q ss_pred eEEEEEccCceEEeecC----ccceEEEeecccceeccccccCCCceEEEEEecc--cccceEEEEecccHHHHHHHHHH
Q psy8450 440 QQILALNKHGVHFLNLL----THETISSVPYGDVISTRKVRAESGTLYLEMKCGN--LFQQRVARIQTDQAHEIARLIRQ 513 (525)
Q Consensus 440 ~~~LaIn~~Gi~~l~~~----tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~--~~~~~~~~~~t~qa~ei~~LI~~ 513 (525)
+.+|-|...+|.+.++. +++.+..+||..|.+++. +++ .|.+..|. ..-+..|.|.|.++.+|.++|..
T Consensus 26 ~y~L~vt~~~l~L~~~~~~~~~~~~l~~Wp~~~LRryG~---d~~--~FsFEaGRrC~tGeG~f~F~t~~~~~If~~l~~ 100 (127)
T 1p5t_A 26 SYILRVEAEKLTLLTLGAQSQILEPLLFWPYTLLRRYGR---DKV--MFSFEAGRRCPSGPGTFTFQTSQGNDIFQAVEA 100 (127)
T ss_dssp EEEEEECSSEEEEEEECTTTCSEEEEEEEEGGGEEEEEE---CSS--EEEEEECTTSTTCSEEEEEECSCHHHHHHHHHH
T ss_pred cEEEEEcCCEEEEEecCcccCCCcceEEEehHHhhhcCc---cCC--EEEEEecCCCCCCCcEEEEEeCCHHHHHHHHHH
Confidence 89999999999999753 578899999999999875 233 45555663 22356999999999999999999
Q ss_pred HHHHHhhh
Q psy8450 514 YMSLDRQK 521 (525)
Q Consensus 514 Yi~~~~~~ 521 (525)
.|+....+
T Consensus 101 ~i~~~k~~ 108 (127)
T 1p5t_A 101 AIQQQKAQ 108 (127)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhc
Confidence 99877653
No 26
>2dlw_A Docking protein 2, isoform A; IRS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.40 E-value=0.013 Score=48.43 Aligned_cols=77 Identities=12% Similarity=0.106 Sum_probs=63.1
Q ss_pred CeEEEEEccCceEE-eecCccceEEEeecccceeccccccCCCceEEEEEecc--cccceEEEEecccHHHHHHHHHHHH
Q psy8450 439 DQQILALNKHGVHF-LNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGN--LFQQRVARIQTDQAHEIARLIRQYM 515 (525)
Q Consensus 439 ~~~~LaIn~~Gi~~-l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~--~~~~~~~~~~t~qa~ei~~LI~~Yi 515 (525)
++.+|-|..+++.+ .++++++.+..+||.-|.+++.. .+ .|.+..|. ..-+..|.|+|.++++|.+.|..+|
T Consensus 28 G~y~L~l~~~~l~L~~~~~~~~~l~~Wpl~~LRryG~d---~~--~FsfEaGRrC~tGeG~f~F~t~~~~~if~~l~~~i 102 (113)
T 2dlw_A 28 GSYTLRAGESALELWGGPEPGTQLYDWPYRFLRRFGRD---KV--TFSFEAGRRCVSGEGNFEFETRQGNEIFLALEEAI 102 (113)
T ss_dssp SEEEEEECSSBEECCCSSSSCCCSSCCBGGGCCCEEEE---TT--EEEEEECSSCSSCSEEEEECCSTHHHHHHHHHHHH
T ss_pred ccEEEEEcCCEEEEEecCCCCCceEEEEhHHhhhcCcc---CC--EEEEEecCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Confidence 38999999999999 68888999999999999998753 33 45555563 2234689999999999999999999
Q ss_pred HHHhh
Q psy8450 516 SLDRQ 520 (525)
Q Consensus 516 ~~~~~ 520 (525)
+...+
T Consensus 103 ~~~~~ 107 (113)
T 2dlw_A 103 SAQKN 107 (113)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 88765
No 27
>2c5l_C Phosphoinositide-specific phospholipase C PLC-epsilon; signaling protein/complex, RAS, ubiquitin superfold, oncogene, GTP-binding; HET: GTP; 1.9A {Homo sapiens} SCOP: d.15.1.5 PDB: 2byf_A
Probab=96.31 E-value=0.027 Score=46.66 Aligned_cols=85 Identities=14% Similarity=0.097 Sum_probs=65.1
Q ss_pred CceeeEEe-cCCCcEEEEEeCCcchHHHHHHHHHHHhCCC-----CCCCCcceEEEEEEc-C---------CceeecCCC
Q psy8450 219 NSKRQLYR-LPGGSETVINTKSTTVVEDICIEMCQLINVN-----NDLEMEEFSLYCIVE-G---------DAFTMPLAK 282 (525)
Q Consensus 219 ~~~~~iv~-lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~-----~~~~~~~FsL~~~~~-~---------~~~~~~L~~ 282 (525)
...+.|+- -|+..+.++.|...|||+||++++..++|.. ... ...|-|.+... + +...|-|.+
T Consensus 7 tf~v~V~~v~p~~py~iv~vt~~STAqdvI~eaL~kag~~~~~~~~~~-~~dYvLvEev~~~~~~k~~~~~~~~~RVL~~ 85 (117)
T 2c5l_C 7 SFFVQVHDVSPEQPRTVIKAPRVSTAQDVIQQTLCKAKYSLSILSNPN-PSDYVLLEEVVKDTTNKKTTTPKSSQRVLLD 85 (117)
T ss_dssp EEEEEEESCCSSCCEEEEEEETTCBHHHHHHHHHHHTTTSHHHHHSCC-GGGEEEEEEEECC---------CEEEEECCT
T ss_pred eEEEEEecCCCCCCeEEEEeCCCCcHHHHHHHHHHHcCCccccccCCC-chHeEEEEEEcccCCCccccccCceEEecCC
Confidence 34455544 5777888999999999999999999999976 322 37899998873 2 245788999
Q ss_pred cchhhhhhHHHhhcCCcEEEEEeee
Q psy8450 283 EEYILDVTTELHKNQQVFYLIFCRS 307 (525)
Q Consensus 283 ~~~i~Dvl~~~e~~~~~~~l~frr~ 307 (525)
+|.++++++.|.. .-+|+++++
T Consensus 86 ~E~~l~~qs~Wk~---~gRF~Lk~r 107 (117)
T 2c5l_C 86 QECVFQAQSKWKG---AGKFILKLK 107 (117)
T ss_dssp TSBHHHHHHTCSS---CEEEEEEET
T ss_pred CCCHHHHHHhhCc---CceEEEEEC
Confidence 9999999999953 356666654
No 28
>1xr0_B FGFR signalling adaptor SNT-1; phosphotyrosine binding domain, PTB, TRK, NPXPY motif,, signaling protein/growth factor receptor complex; NMR {Homo sapiens} SCOP: b.55.1.2
Probab=94.71 E-value=0.39 Score=40.37 Aligned_cols=82 Identities=12% Similarity=0.124 Sum_probs=61.0
Q ss_pred eEEEEEeeC------CeEEEEEccCceEEeecCccceEEEeecccceeccccccCCCceEEEEEeccc--ccceEEEEec
Q psy8450 430 SFFAIKRNG------DQQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNL--FQQRVARIQT 501 (525)
Q Consensus 430 ~~F~v~~~~------~~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~--~~~~~~~~~t 501 (525)
.-|.|.... ++.+|-|....+.+.+++ ..+..|||..|.+++.. .+ .|.+.-|.- .-+..|.|.|
T Consensus 12 ~~F~V~~~~~~~~e~g~~~L~lt~~~L~L~~~~--~~~~~Wp~~~LRrYG~d---~~--~FsFEaGRRC~tGeGiF~F~t 84 (129)
T 1xr0_B 12 NKFKVINVDDDGNELGSGIMELTDTELILYTRK--RDSVKWHYLCLRRYGYD---SN--LFSFESGRRCQTGQGIFAFKC 84 (129)
T ss_dssp CEEEEEEECSSCCCCCCEEEEECSSCEEEEETT--TEEEEECSTTEEEEEEC---SS--EEEEEECSCSTTCSEEEEEEC
T ss_pred CEEEEEEeCCCCCcceeEEEEEecCEEEEEeCC--CCeeEcchHHhhhcCcc---CC--EEEEEcCCCCCCCCcEEEEEc
Confidence 456666533 289999999999998755 45679999999998753 33 344445532 2246899999
Q ss_pred ccHHHHHHHHHHHHHHH
Q psy8450 502 DQAHEIARLIRQYMSLD 518 (525)
Q Consensus 502 ~qa~ei~~LI~~Yi~~~ 518 (525)
.+|++|.+++..+++-.
T Consensus 85 ~~~~~If~~l~~~i~~~ 101 (129)
T 1xr0_B 85 ARAEELFNMLQEIMQNN 101 (129)
T ss_dssp SCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhcc
Confidence 99999999999988743
No 29
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1
Probab=94.67 E-value=0.15 Score=40.23 Aligned_cols=63 Identities=14% Similarity=0.180 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHHh--cCCCC-CCChhhhhhccCcccccccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-
Q psy8450 349 IVYDVAKLAALLHRA--ADMSH-PPAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKW- 424 (525)
Q Consensus 349 ~~~~~~~LaAl~~~~--~d~~~-~~~~~~l~~~lP~~~~~~~~~~~~~w~~~I~~~~~~l~g~s~~~Ak~~fL~~~~~~- 424 (525)
+.++..+|-||.-|+ ||++. .|. +. +-.-+.=.++|++++|+|+++|+..|++++.++
T Consensus 23 ~~~~~L~LYalyKQAt~Gd~~~~~Pg-----------~~-------d~~~~aKw~AW~~l~gms~eeA~~~YI~~v~~l~ 84 (89)
T 1hbk_A 23 PNELKLDLYKYYKQSTIGNCNIKEPS-----------AH-------KYIDRKKYEAWKSVENLNREDAQKRYVDIVSEIF 84 (89)
T ss_dssp CHHHHHHHHHHHHHHHTCSCCSCCCC-----------TT-------SHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhhcCCCCCCCCC-----------cc-------CHHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 568999999998776 66652 121 11 011233467899999999999999999999654
Q ss_pred CCCCc
Q psy8450 425 PLFGS 429 (525)
Q Consensus 425 p~yGs 429 (525)
|-||+
T Consensus 85 ~~~~~ 89 (89)
T 1hbk_A 85 PYWQD 89 (89)
T ss_dssp TTTTC
T ss_pred ccccC
Confidence 66653
No 30
>3d8d_A Amyloid beta A4 precursor protein-binding family 1; alpha-beta structure, phosphotyrosine binding domain; 2.20A {Homo sapiens} PDB: 3d8e_A 3d8f_A
Probab=94.63 E-value=0.27 Score=42.38 Aligned_cols=80 Identities=13% Similarity=0.057 Sum_probs=59.7
Q ss_pred eEEEEEccCceEEeecCccceEEEeecccceeccccccCCC--ceEEEEEecccccc--eEEEEecccHHHHHHHHHHHH
Q psy8450 440 QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESG--TLYLEMKCGNLFQQ--RVARIQTDQAHEIARLIRQYM 515 (525)
Q Consensus 440 ~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~--~~~~~i~~g~~~~~--~~~~~~t~qa~ei~~LI~~Yi 515 (525)
+++|-|+..+|.++|+.|+..|..+|...|.=|+.-+.... .+-|..+.++..+. ..|.++ ..|..|+.-+.++|
T Consensus 56 ~~~L~v~~~tlrLvD~~tk~~L~~~pI~~I~f~~~gr~~~~~~dFAfv~rd~~t~~~~CHvFrCe-~~a~~Ia~al~~~c 134 (148)
T 3d8d_A 56 DLLLQLEDETLKLVEPQSQALLHAQPIISIRVWGVGRDSGRERDFAYVARDKLTQMLKCHVFRCE-APAKNIATSLHEIC 134 (148)
T ss_dssp EEEEEEETTEEEEECTTTCCEEEEEEGGGCCEEEECCCC--CCEEEEEEECTTTCCEEEEEEEES-SCHHHHHHHHHHHH
T ss_pred eEEEEEcCCeEEEecCCCCceEEEeeEEEEEEEeCCCCCCccccEEEEEecCCCcceEeEEEEcC-CchHHHHHHHHHHH
Confidence 79999999999999999999999999999987765443322 23344444443333 346665 67999999999999
Q ss_pred HHHhh
Q psy8450 516 SLDRQ 520 (525)
Q Consensus 516 ~~~~~ 520 (525)
..+..
T Consensus 135 ~~~~~ 139 (148)
T 3d8d_A 135 SKIMA 139 (148)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 31
>2bye_A Phospholipase C, epsilon 1; RAS association domain, ubiquitin superfold; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=94.32 E-value=0.14 Score=41.65 Aligned_cols=89 Identities=9% Similarity=0.094 Sum_probs=63.4
Q ss_pred CCceeeEEe-cCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEE---Ec----C---CceeecCCCcchh
Q psy8450 218 RNSKRQLYR-LPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCI---VE----G---DAFTMPLAKEEYI 286 (525)
Q Consensus 218 ~~~~~~iv~-lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~---~~----~---~~~~~~L~~~~~i 286 (525)
+...+.|+- .+|....++.++..|||+||++++..+.+..... ...|-|.+. .+ + ....|.|.++|.+
T Consensus 8 ~tf~v~V~gv~~~ePftI~~~~~~STAkdvl~qaL~ka~~~~~~-~~~YvL~EE~v~~~~ek~~~~~~~~qRvL~~~E~v 86 (110)
T 2bye_A 8 QTHRVTVHGVPGPEPFTVFTINGGTKAKQLLQQILTNEQDIKPV-TTDYFLMEEKYFISKEKNECRKQPFQRAIGPEEEI 86 (110)
T ss_dssp CCCEEEESSCSSSSSSEEEECCTTCCHHHHHHHHHCCSSSSCCC-CCSEEEEEECCCCSSSSCSCTTSCCEEEECSSSCH
T ss_pred cEEEEEEcCCCCCCCcEEEEecCCCcHHHHHHHHHHHhcCCCCC-cccEEEEEEEeccccccCCccCCceeeecCCCccH
Confidence 344455544 4566677899999999999999999999887543 378899887 21 1 1357889999999
Q ss_pred hhhhHHHhhcCC-cEEEEEeee
Q psy8450 287 LDVTTELHKNQQ-VFYLIFCRS 307 (525)
Q Consensus 287 ~Dvl~~~e~~~~-~~~l~frr~ 307 (525)
+++.+.|....+ .=+|.+|++
T Consensus 87 l~aqs~Wk~~egy~GRFiLk~r 108 (110)
T 2bye_A 87 MQILSSWFPEEGYMGRIVLKTQ 108 (110)
T ss_dssp HHHHHHCCTTTTTCCCEEEEES
T ss_pred HHHHhhhCCCCCcceeEEEEec
Confidence 999999954311 235666654
No 32
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1
Probab=94.06 E-value=0.14 Score=40.54 Aligned_cols=63 Identities=16% Similarity=0.189 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHHh--cCCCCCCChhhhhhccCcccccccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-C
Q psy8450 349 IVYDVAKLAALLHRA--ADMSHPPAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKW-P 425 (525)
Q Consensus 349 ~~~~~~~LaAl~~~~--~d~~~~~~~~~l~~~lP~~~~~~~~~~~~~w~~~I~~~~~~l~g~s~~~Ak~~fL~~~~~~-p 425 (525)
+.++..+|-||.-|+ ||++.. -|. +.. -..+.=.++|++++|+|+++|+..|++.+.++ |
T Consensus 23 ~~~~~L~lYalyKQAt~Gd~~~~---------~Pg-~~d-------~~~~aKw~AW~~l~g~s~eeA~~~Yi~~v~~l~~ 85 (89)
T 3epy_A 23 DDGELKELYGLYKQAIVGDINIA---------CPG-MLD-------LKGKAKWEAWNLKKGLSTEDATSAYISKAKELIE 85 (89)
T ss_dssp CHHHHHHHHHHHHHHHTCSCCSC---------CTT-TTC-------HHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCCCCCC---------CCc-ccc-------hHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Confidence 568899999998876 666521 011 110 01123346899999999999999999998664 5
Q ss_pred CCC
Q psy8450 426 LFG 428 (525)
Q Consensus 426 ~yG 428 (525)
-||
T Consensus 86 ky~ 88 (89)
T 3epy_A 86 KYG 88 (89)
T ss_dssp HHC
T ss_pred hhc
Confidence 554
No 33
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae}
Probab=93.98 E-value=0.081 Score=41.58 Aligned_cols=63 Identities=13% Similarity=0.202 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHHHh--cCCCCCCChhhhhhccCcccccccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-C
Q psy8450 349 IVYDVAKLAALLHRA--ADMSHPPAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKW-P 425 (525)
Q Consensus 349 ~~~~~~~LaAl~~~~--~d~~~~~~~~~l~~~lP~~~~~~~~~~~~~w~~~I~~~~~~l~g~s~~~Ak~~fL~~~~~~-p 425 (525)
+.++..+|-||.-|+ ||++... |. +. . -.-+.=.++|++++|+|+++|+..|++++.++ |
T Consensus 20 ~~~~~L~lYalyKQAt~Gd~~~~~---------Pg-~~-----d--~~~raKw~AW~~l~gms~eeA~~~YI~~v~~l~~ 82 (86)
T 1st7_A 20 STDELLELYALYKQATVGDNDKEK---------PG-IF-----N--MKDRYKWEAWENLKGKSQEDAEKEYIALVDQLIA 82 (86)
T ss_dssp CHHHHHHHHHHHHHHHHCSCCCCC---------CC-SS-----C--HHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCCCCCCC---------CC-cc-----C--HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 568899999998776 6765210 11 11 0 11223457899999999999999999998654 4
Q ss_pred CCC
Q psy8450 426 LFG 428 (525)
Q Consensus 426 ~yG 428 (525)
-||
T Consensus 83 ~~~ 85 (86)
T 1st7_A 83 KYS 85 (86)
T ss_dssp HHC
T ss_pred hhc
Confidence 444
No 34
>2kuq_A Fibroblast growth factor receptor substrate 3, LI residue peptide from ALK tyrosine...; chimera, SNT-2, PTB domain, HALK, structural genomics; NMR {Homo sapiens} PDB: 2yt2_A
Probab=93.86 E-value=0.48 Score=40.83 Aligned_cols=81 Identities=16% Similarity=0.186 Sum_probs=60.0
Q ss_pred eEEEEEeeCC------eEEEEEccCceEEeecCccceEEEeecccceeccccccCCCceEEEEEecc--cccceEEEEec
Q psy8450 430 SFFAIKRNGD------QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGN--LFQQRVARIQT 501 (525)
Q Consensus 430 ~~F~v~~~~~------~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~--~~~~~~~~~~t 501 (525)
.-|.|....+ +.+|-|....+.+.+++.+ +..|||..|.+++.. .+ .|.+.-|. ..-+-.|.|.|
T Consensus 19 ~~F~V~v~~~~~~e~G~~~L~lt~~~L~L~~~~~~--~~~WPy~~LRRYG~d---~~--~FsFEaGRRC~tGeGiF~F~t 91 (153)
T 2kuq_A 19 TKFKVTNVDDEGVELGSGVMELTQSELVLHLHRRE--AVRWPYLCLRRYGYD---SN--LFSFESGRRCQTGQGIFAFKC 91 (153)
T ss_dssp SEEEEEEECTTCCEEEEEEEEECSSCEEEECSSSC--CEEECGGGEEEEEEE---TT--EEEEEECTTSTTCSEEEEEEC
T ss_pred CEeEEEEeCCCCCceeeEEEEEcCCEEEEEeCCCC--ceEccHHHhhhcCcc---CC--EEEEECCCCCCCCCcEEEEEc
Confidence 3466654332 7899999999999987753 469999999998753 23 34454553 22256999999
Q ss_pred ccHHHHHHHHHHHHHH
Q psy8450 502 DQAHEIARLIRQYMSL 517 (525)
Q Consensus 502 ~qa~ei~~LI~~Yi~~ 517 (525)
.+|++|..++..+|+-
T Consensus 92 ~~~e~If~~l~~~iq~ 107 (153)
T 2kuq_A 92 SRAEEIFNLLQDLMQC 107 (153)
T ss_dssp TTHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999988764
No 35
>3so6_A LDL receptor adaptor protein; PTB, endocytic adaptor, autosomal reces hypercholesterolemia, ARH, cholesterol; 1.37A {Rattus norvegicus}
Probab=93.85 E-value=0.52 Score=40.15 Aligned_cols=80 Identities=10% Similarity=0.062 Sum_probs=53.2
Q ss_pred eEEEEEccCceEEeecCccceEEEeecccceeccccccCCCceEEEEEecccccceEEEEecc---cHHHHHHHHHHHHH
Q psy8450 440 QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNLFQQRVARIQTD---QAHEIARLIRQYMS 516 (525)
Q Consensus 440 ~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~~~~~~~~~~t~---qa~ei~~LI~~Yi~ 516 (525)
++.|-|+.+||.++|+++++.+..+|...|.-+...+.+...+-+..+-++...-....|... +|.+|+..|..=.+
T Consensus 45 ~v~L~Vs~~gi~l~d~~~~~~~~~~~i~~Isf~~~d~~~~~~FafI~r~~~~~~~~CHvF~c~~~~~A~~i~~~l~~AF~ 124 (137)
T 3so6_A 45 KVTLKVSPRGIILTDSLTSQLIENVSIYRISYCTADKMHDKVFAYIAQSQQNESLECHAFLCTKRKVAQAVTLTVAQAFK 124 (137)
T ss_dssp EEEEEEETTEEEEEETTTCCEEEEEEGGGEEEEEECSSSTTEEEEEEECSSSSCEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCCeEEEEECCCCcEEEeeccCEEEEEEecCCCCCEEEEEEEcCCCCeEEEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999766543222222222222222112245556554 68888888876555
Q ss_pred HHh
Q psy8450 517 LDR 519 (525)
Q Consensus 517 ~~~ 519 (525)
...
T Consensus 125 ~a~ 127 (137)
T 3so6_A 125 VAF 127 (137)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 36
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A
Probab=93.74 E-value=0.14 Score=40.28 Aligned_cols=62 Identities=11% Similarity=0.139 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHHh--cCCCC-CCChhhhhhccCcccccccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-
Q psy8450 349 IVYDVAKLAALLHRA--ADMSH-PPAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKW- 424 (525)
Q Consensus 349 ~~~~~~~LaAl~~~~--~d~~~-~~~~~~l~~~lP~~~~~~~~~~~~~w~~~I~~~~~~l~g~s~~~Ak~~fL~~~~~~- 424 (525)
+.++..+|-||.-|+ ||++. .|. +. . -.-+.=.++|++++|+|+++|+..|++++.++
T Consensus 21 ~~~~~L~lYalyKQAt~Gd~~~~~Pg-----------~~-----d--~~~~aKw~AW~~l~gms~eeA~~~Yi~~v~~l~ 82 (87)
T 2cb8_A 21 SDEEMLFIYGHYKQATVGDINTERPG-----------ML-----D--FTGKAKWDAWNELKGTSKEDAMKAYINKVEELK 82 (87)
T ss_dssp CHHHHHHHHHHHHHHHTCSCCSCCCC-----------TT-----C--HHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhhhCCCCCCCCC-----------cc-----c--HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 568999999998876 66652 121 11 0 11233457899999999999999999998654
Q ss_pred CCCC
Q psy8450 425 PLFG 428 (525)
Q Consensus 425 p~yG 428 (525)
|.||
T Consensus 83 ~~~~ 86 (87)
T 2cb8_A 83 KKYG 86 (87)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 4444
No 37
>1ntv_A Disabled homolog 1; beta-sandwich, signaling protein; 1.50A {Mus musculus} SCOP: b.55.1.2 PDB: 1nu2_A* 1oqn_A*
Probab=93.61 E-value=0.3 Score=42.70 Aligned_cols=77 Identities=16% Similarity=0.150 Sum_probs=54.1
Q ss_pred eEEEEEccCceEEeecCccceEEEeecccceeccccccCCCceEEEEEecccccceEEEEecc-cHHHHHHHHHHHHHHH
Q psy8450 440 QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNLFQQRVARIQTD-QAHEIARLIRQYMSLD 518 (525)
Q Consensus 440 ~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~~~~~~~~~~t~-qa~ei~~LI~~Yi~~~ 518 (525)
++.|-|+..||.++|++|++++..+|...|+-....+ .+. -+|-....+......+.|+++ .|.+|+..|..=.++.
T Consensus 62 ~v~L~IS~~GI~v~d~~tk~~~~~~~l~~ISf~a~d~-~d~-r~FafI~k~~~~h~f~v~~s~~~A~~I~~tigqAF~~a 139 (152)
T 1ntv_A 62 KIFLTISFGGIKIFDEKTGALQHHHAVHEISYIAKDI-TDH-RAFGYVCGKEGNHRFVAIKTAQAAEPVILDLRDLFQLI 139 (152)
T ss_dssp EEEEEEETTEEEEEETTTCCEEEEECGGGEEEEEECT-TCT-TEEEEEESSTTCCEEEEEEESSCSHHHHHHHHHHHHHH
T ss_pred EEEEEEECCeEEEEECCCCceEeeeecCcEEEEeCCC-CCC-cEEEEEEEcCCeEEEEEEccHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999996544322 222 234443443333334456665 7999999887654443
No 38
>2kup_A Fibroblast growth factor receptor substrate 3; complex, SNT-2, PTB domain, HALK, structural genomics, signa protein, NPPSFA; NMR {Homo sapiens} PDB: 2ys5_A
Probab=93.58 E-value=0.41 Score=41.05 Aligned_cols=80 Identities=16% Similarity=0.195 Sum_probs=59.3
Q ss_pred eEEEEEeeCC------eEEEEEccCceEEeecCccceEEEeecccceeccccccCCCceEEEEEecc--cccceEEEEec
Q psy8450 430 SFFAIKRNGD------QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGN--LFQQRVARIQT 501 (525)
Q Consensus 430 ~~F~v~~~~~------~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~--~~~~~~~~~~t 501 (525)
.-|.|....+ +.+|-|....|.+.+++ ..+..|||..|.+++.. .+ .|.+.-|. ..-+..|.|.|
T Consensus 19 ~~F~V~v~~~~~~e~G~~~L~Lt~~~L~L~~~~--~~~~~WPy~~LRRYG~d---~~--~FsFEaGRrC~tGeGiF~F~t 91 (146)
T 2kup_A 19 TKFKVTNVDDEGVELGSGVMELTQSELVLHLHR--REAVRWPYLCLRRYGYD---SN--LFSFESGRRCQTGQGIFAFKC 91 (146)
T ss_dssp SEEEEEEECTTCCEEEEEEEEECSSCEEEECSS--SCCEEECGGGCSCEEEE---TT--EEEEEECTTSSSCSEEEEEEC
T ss_pred CEEEEEEeCCCCCcceeEEEEEccCEEEEEcCC--CCeeEcCHHHhhhcCcc---CC--EEEEEcCCCCCCCCCEEEEEc
Confidence 4566664332 78899999999988765 45779999999998753 23 34444553 22256999999
Q ss_pred ccHHHHHHHHHHHHH
Q psy8450 502 DQAHEIARLIRQYMS 516 (525)
Q Consensus 502 ~qa~ei~~LI~~Yi~ 516 (525)
.+|++|..++..+|+
T Consensus 92 ~~~e~If~~l~~~iq 106 (146)
T 2kup_A 92 SRAEEIFNLLQDLMQ 106 (146)
T ss_dssp TTHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999998874
No 39
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=93.51 E-value=0.11 Score=40.86 Aligned_cols=48 Identities=21% Similarity=0.371 Sum_probs=38.2
Q ss_pred CCCceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 217 GRNSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 217 ~~~~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
+.-+.+. |..+|+....|+|.++|+..||+++.|++.|+.. +.|.|.-
T Consensus 7 ~~~m~v~-Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~----~~~~Lkh 54 (90)
T 2al3_A 7 GGGSAVS-VLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNP----SEYDLKF 54 (90)
T ss_dssp ---CCEE-EECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCG----GGCEEEE
T ss_pred CCccEEE-EEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCCh----hhCeEEe
Confidence 3445555 5688999899999999999999999999999964 4688864
No 40
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.32 E-value=0.32 Score=39.94 Aligned_cols=65 Identities=14% Similarity=0.158 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHh--cCCCCCCChhhhhhccCcccccccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-C
Q psy8450 349 IVYDVAKLAALLHRA--ADMSHPPAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKW-P 425 (525)
Q Consensus 349 ~~~~~~~LaAl~~~~--~d~~~~~~~~~l~~~lP~~~~~~~~~~~~~w~~~I~~~~~~l~g~s~~~Ak~~fL~~~~~~-p 425 (525)
+.++..+|-||.-|+ ||++.. -|. ++ . -.-+.=.++|+++.|+|+++|+..|++++.++ |
T Consensus 27 ~~~~~L~LYaLyKQAt~Gd~~~~---------~Pg-~~-----d--~~~raKw~AW~~l~gms~eeAm~~YI~lv~~l~~ 89 (109)
T 2cop_A 27 SREQLLYLYARYKQVKVGNCNTP---------KPS-FF-----D--FEGKQKWEAWKALGDSSPSQAMQEYIAVVKKLDP 89 (109)
T ss_dssp CHHHHHHHHHHHHHHHTCSCCSC---------CCC-SS-----C--HHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHhhcCCCCCC---------CCC-cc-----C--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Confidence 568999999998876 666521 011 11 0 11233467899999999999999999999654 6
Q ss_pred CCCce
Q psy8450 426 LFGSS 430 (525)
Q Consensus 426 ~yGs~ 430 (525)
.|+..
T Consensus 90 ~~~~~ 94 (109)
T 2cop_A 90 GWNPQ 94 (109)
T ss_dssp TCCCC
T ss_pred hhccc
Confidence 66653
No 41
>2ej8_A DCC-interacting protein 13 alpha; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.84A {Homo sapiens}
Probab=92.58 E-value=0.63 Score=41.00 Aligned_cols=79 Identities=9% Similarity=0.067 Sum_probs=54.6
Q ss_pred CeEEEEEccCceEEeecCccceEEEeecccceeccccccCCCceEEEEEeccc-------ccceEEEEecc-cHHHHHHH
Q psy8450 439 DQQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNL-------FQQRVARIQTD-QAHEIARL 510 (525)
Q Consensus 439 ~~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~-------~~~~~~~~~t~-qa~ei~~L 510 (525)
.++.|-|+..||.++|+++++++..+|...|.-+...+ ++. -+|-....+. ..-....|++. .|.+|+.-
T Consensus 57 ~~v~L~VS~~gi~l~d~~tk~~~~~~~i~~ISfca~d~-~~~-r~FafIar~~~~~~~~~~~~~CHVF~~~~~A~~I~~t 134 (160)
T 2ej8_A 57 TESHLLVTCDCLKLIDPQTQVTRLTFPLPCVVLYATHQ-ENK-RLFGFVLRTSSGRSESNLSSVCYIFESNNEGEKICDS 134 (160)
T ss_dssp CEEEEEEESSEEEEECTTTCCEEEEEEGGGEEEEEEET-TEE-EEEEEEEEECC------CEEEEEEEEESSCHHHHHHH
T ss_pred CEEEEEEECCeEEEEeCCCCeEEEEeeCCeEEEEEecC-CCC-eEEEEEEecCCcccCCCccEEEEEEEcchhHHHHHHH
Confidence 37999999999999999999999999999997665432 222 2233222221 12245677776 79999988
Q ss_pred HHHHHHHHh
Q psy8450 511 IRQYMSLDR 519 (525)
Q Consensus 511 I~~Yi~~~~ 519 (525)
|..=.+...
T Consensus 135 igqAF~~ay 143 (160)
T 2ej8_A 135 VGLAKQIAL 143 (160)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 876554443
No 42
>2cy5_A Epidermal growth factor receptor pathway substrate 8-like protein 1; structural genomics, signal transduction, phosphorylation, PTB domain, NPPSFA; 1.90A {Mus musculus} SCOP: b.55.1.2 PDB: 2cy4_A
Probab=92.16 E-value=1.1 Score=38.28 Aligned_cols=81 Identities=19% Similarity=0.188 Sum_probs=56.6
Q ss_pred eEEEEEccCceEEeecCccceEEEeecccceeccccccCCC-ceEEEEEe--cccccceE--EEEecccHHHHHHHHHHH
Q psy8450 440 QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESG-TLYLEMKC--GNLFQQRV--ARIQTDQAHEIARLIRQY 514 (525)
Q Consensus 440 ~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~-~~~~~i~~--g~~~~~~~--~~~~t~qa~ei~~LI~~Y 514 (525)
+.+|-|+..+|.++|..|++.+..||++.|.......+... +..+.+.+ ++..++.. |+|..-.|+.|..=|.++
T Consensus 50 ~m~L~v~~~~v~LlD~et~eelE~fpl~~I~~~~av~~~~~y~siLllv~q~~~~~~~~iH~FQc~ev~A~~v~~di~~a 129 (140)
T 2cy5_A 50 EMLLRVSPSQVTLLDPVSKEELESYPLDAIVRCDAVMPRGRSRSLLLLVCQEPERAQPDVHFFQGLLLGAELIREDIQGA 129 (140)
T ss_dssp EEEEEECSSEEEEECTTTCCEEEEEEGGGEEEEEEECCSSCSSCEEEEEECCTTCSSCEEEEEEECTTHHHHHHHHHHHH
T ss_pred eeEEEECCCeEEEEccCccchhhcCChhhceeccccCCccccCcEEEEEEecCCCCCccEEEEEeccccHHHHHHHHHHH
Confidence 68899999999999999999999999999998755543221 23333433 33334444 555555688888888887
Q ss_pred HHHHhh
Q psy8450 515 MSLDRQ 520 (525)
Q Consensus 515 i~~~~~ 520 (525)
+.-...
T Consensus 130 l~~~~~ 135 (140)
T 2cy5_A 130 LQNYRS 135 (140)
T ss_dssp HHHHC-
T ss_pred HHHhhc
Confidence 765443
No 43
>2ela_A Adapter protein containing PH domain, PTB domain and leucine zipper motif 1; APPL, cell cycle; 2.00A {Homo sapiens}
Probab=92.13 E-value=0.75 Score=41.18 Aligned_cols=77 Identities=9% Similarity=0.078 Sum_probs=53.7
Q ss_pred eEEEEEccCceEEeecCccceEEEeecccceeccccccCCCceEEEEEeccc-------ccceEEEEecc-cHHHHHHHH
Q psy8450 440 QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNL-------FQQRVARIQTD-QAHEIARLI 511 (525)
Q Consensus 440 ~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~-------~~~~~~~~~t~-qa~ei~~LI 511 (525)
++.|-|+..||.++|+++++++..+|...|.-+...+ ++. -+|-....+. ..-....|++. .|.+|+.-|
T Consensus 71 ~V~L~VS~~gI~l~d~~tk~~i~~~~i~~ISfca~d~-~d~-r~FafIar~~~~~~~~~~~~~CHVF~~~~~A~~I~~tI 148 (175)
T 2ela_A 71 ESHLLVTCDCLKLIDPQTQVTRLTFPLPCVVLYATHQ-ENK-RLFGFVLRTSSGRSESNLSSVCYIFESNNEGEKICDSV 148 (175)
T ss_dssp EEEEEECSSEEEEECTTTCCEEEEEEGGGEEEEEEET-TEE-EEEEEEEEEC-------CEEEEEEEEESSCHHHHHHHH
T ss_pred EEEEEEECCeEEEEeCCCCcEEEEeecCEEEEEEeCC-CCC-cEEEEEEecCccccCCCcceEEEEEEcchhHHHHHHHH
Confidence 7999999999999999999999999999997655432 222 2333322221 11245677776 799999888
Q ss_pred HHHHHHH
Q psy8450 512 RQYMSLD 518 (525)
Q Consensus 512 ~~Yi~~~ 518 (525)
..=.+..
T Consensus 149 gqAF~~a 155 (175)
T 2ela_A 149 GLAKQIA 155 (175)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7654443
No 44
>3f0w_A NUMB-R, NUMB-like protein; PH domain-like, PID domain, phosphoprotein, signaling protei structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} PDB: 1wj1_A 2nmb_A* 1ddm_A
Probab=91.88 E-value=1.4 Score=39.04 Aligned_cols=82 Identities=9% Similarity=0.037 Sum_probs=53.2
Q ss_pred CeEEEEEccCceEEeecCccceEEEeecccceeccccccCCCceEEEEEecccccceEEEEe--cccHHHHHHHHHHHHH
Q psy8450 439 DQQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNLFQQRVARIQ--TDQAHEIARLIRQYMS 516 (525)
Q Consensus 439 ~~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~~~~~~~~~~--t~qa~ei~~LI~~Yi~ 516 (525)
.++.|-|+..||.++|+++++++..+|...|.-+...+.+...+.+..+-+....-....|. ...|.+|+..|..=.+
T Consensus 78 ~~V~L~VS~~GI~l~d~~t~~~l~~~~i~~ISf~~~d~~~~~~FafIar~~~~~~~~CHvF~c~~~~A~~I~~aIgqAF~ 157 (168)
T 3f0w_A 78 VKSVLWVSADGLRVVDDKTKDLLVDQTIEKVSFCAPDRNLDKAFSYICRDGTTRRWICHCFLALKDSGERLSHAVGCAFA 157 (168)
T ss_dssp EEEEEEECSSEEEEEETTTCCEEEEEEGGGEEEEEECSSCTTEEEEEEEETTTTEEEEEEEEESSSCHHHHHHHHHHHHH
T ss_pred cEEEEEEECCEEEEEeCCCCeEEEeeecCcEEEEecCCCCCcEEEEEEecCCCCcEEEEEEEeccchHHHHHHHHHHHHH
Confidence 37999999999999999999999999999997655432222222222222221112344444 4459999988876555
Q ss_pred HHhh
Q psy8450 517 LDRQ 520 (525)
Q Consensus 517 ~~~~ 520 (525)
...+
T Consensus 158 ~a~~ 161 (168)
T 3f0w_A 158 ACLE 161 (168)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 45
>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.85 E-value=0.52 Score=39.04 Aligned_cols=63 Identities=19% Similarity=0.209 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHHh--cCCCC-CCChhhhhhccCcccccccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-
Q psy8450 349 IVYDVAKLAALLHRA--ADMSH-PPAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKW- 424 (525)
Q Consensus 349 ~~~~~~~LaAl~~~~--~d~~~-~~~~~~l~~~lP~~~~~~~~~~~~~w~~~I~~~~~~l~g~s~~~Ak~~fL~~~~~~- 424 (525)
+.++..+|-||.-|+ ||++. .|. ++ . -.-+.=.++|+++.|+|+++|+..|++++.++
T Consensus 35 ~~~~~L~LYaLyKQAt~Gd~~~~~Pg-----------~~-----d--~~graKw~AW~~l~gms~eeAm~~YI~lv~~l~ 96 (116)
T 2cqu_A 35 GNEVKLKLYALYKQATEGPCNMPKPG-----------VF-----D--LINKAKWDAWNALGSLPKEAARQNYVDLVSSLS 96 (116)
T ss_dssp CHHHHHHHHHHHTTTTTCSCCSCCCC-----------TT-----C--HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHhcCCCCCCCCC-----------cc-----c--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 568889999998776 56541 111 11 0 11223357899999999999999999999654
Q ss_pred CCCCc
Q psy8450 425 PLFGS 429 (525)
Q Consensus 425 p~yGs 429 (525)
|.|++
T Consensus 97 ~~~~~ 101 (116)
T 2cqu_A 97 PSLES 101 (116)
T ss_dssp SCCCC
T ss_pred ccccc
Confidence 66665
No 46
>4dx8_A Integrin beta-1-binding protein 1; protein-protien complex, PTB domain, nudix fold, protein-Pro interaction, membrane, nucleus, protein binding; 2.54A {Homo sapiens} PDB: 4dx9_A
Probab=91.64 E-value=1.4 Score=37.83 Aligned_cols=81 Identities=14% Similarity=0.095 Sum_probs=58.3
Q ss_pred eEEEEEccCceEEeecCccceEEEeecccceeccccccCC--CceEEEEEecccccc--eEEEEe--cc-cHHHHHHHHH
Q psy8450 440 QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAES--GTLYLEMKCGNLFQQ--RVARIQ--TD-QAHEIARLIR 512 (525)
Q Consensus 440 ~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~--~~~~~~i~~g~~~~~--~~~~~~--t~-qa~ei~~LI~ 512 (525)
++++.|++.||.+.+.++..++..+|+-+|.+.-.+.... +...|.+++++.... ....|+ +. +|.+|+.++.
T Consensus 63 dvi~svSkyGvkl~~~d~~dvl~RipL~~I~~~v~YdDg~g~g~~vla~KT~~~~~~~~~~hv~Qc~s~~~A~~iC~~l~ 142 (154)
T 4dx8_A 63 EFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDDGLGAGKSLLALKTTDASNEEYSLWVYQCNSLEQAQAICKVLS 142 (154)
T ss_dssp CEEEEEETTEEEEEETTSCCEEEEEEGGGEEEEEEEECCSSSCCEEEEEEEECTTSCCEEEEEEEESSHHHHHHHHHHHH
T ss_pred eEEEEEeccCcEEEeccCcccccchhHHHhhhheeeccccccccEEEEEEecCCCCceEEEEEEEcCCHHHHHHHHHHHH
Confidence 6999999999999999989999999999999655442212 235677887754332 233344 32 6999999998
Q ss_pred HHHHHHhh
Q psy8450 513 QYMSLDRQ 520 (525)
Q Consensus 513 ~Yi~~~~~ 520 (525)
.-......
T Consensus 143 ~~f~~~~~ 150 (154)
T 4dx8_A 143 TAFDSVLT 150 (154)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 77665543
No 47
>1p3r_A Disabled homolog 2; PTB, signaling protein; 2.10A {Mus musculus} SCOP: b.55.1.2 PDB: 1m7e_A
Probab=91.58 E-value=0.78 Score=40.38 Aligned_cols=76 Identities=13% Similarity=0.178 Sum_probs=52.6
Q ss_pred eEEEEEccCceEEeecCccceEEEeecccceeccccccCCCceEEEEEecccccceEEEEec-ccHHHHHHHHHHHHHH
Q psy8450 440 QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNLFQQRVARIQT-DQAHEIARLIRQYMSL 517 (525)
Q Consensus 440 ~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~~~~~~~~~~t-~qa~ei~~LI~~Yi~~ 517 (525)
++.|-|+..||.++|+++++++..+|...|+-.... +.+. -+|-....+......+.|++ ..|.+|...|..=.++
T Consensus 61 ~V~L~IS~~GI~v~d~~tk~~~~~~~l~~ISfca~d-~~d~-r~FafI~k~~~~h~c~vf~s~~~A~~I~~tigqAF~~ 137 (160)
T 1p3r_A 61 RIWVNISLSGIKIIDEKTGVIEHEHPVNKISFIARD-VTDN-RAFGYVCGGEGQHQFFAIKTGQQAEPLVVDLKDLFQV 137 (160)
T ss_dssp EEEEEEETTEEEEEETTTCCEEEEECGGGEEEEEEC-TTCT-TEEEEEESSTTCEEEEEEEESSCSHHHHHHHHHHHHH
T ss_pred EEEEEEECCeEEEEECCCCeEEEecccCeEEEEecC-CCCC-cEEEEEEecCCEEEEEEEccHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999654432 2222 23444334332223455666 4688998888654443
No 48
>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein, dimerization, SIG protein; HET: PTR; 2.60A {Mus musculus}
Probab=91.57 E-value=1.2 Score=41.11 Aligned_cols=82 Identities=11% Similarity=0.110 Sum_probs=62.5
Q ss_pred eEEEEEee------CCeEEEEEccCceEEeecCccceEEEeecccceeccccccCCCceEEEEEecc--cccceEEEEec
Q psy8450 430 SFFAIKRN------GDQQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGN--LFQQRVARIQT 501 (525)
Q Consensus 430 ~~F~v~~~------~~~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~--~~~~~~~~~~t 501 (525)
.-|.|.-. ++++.|-|....+.+.+..+..++..+|+.+|.+++.. ++.+.|+ -|. ..-+..+.|+|
T Consensus 116 ~rF~V~v~Ps~kL~sG~a~Lhl~~~~l~L~~~~~~~~l~~W~L~~LRRYG~~---~~~F~FE--~grrC~~geG~f~f~t 190 (224)
T 3ml4_A 116 HRFHVTVAPGTKLESGPATLHLCNDILVLARDIPPTVMGQWKLSDLRRYGAV---PNGFIFE--GGTRCGYWAGVFFLSS 190 (224)
T ss_dssp EEEEEEECSSSSSCCEEEEEEEETTEEEEEETTTTEEEEEEEGGGEEEEEEE---TTEEEEE--ECGGGGGGCEEEEEEC
T ss_pred ceEEEEecCccccCCCcEEEEecCCcEEEccCCCccEEEEcchHHhhhhccc---CCEeEEe--cCCcCCCCCCEEEEec
Confidence 56776532 23899999999999999999889999999999998754 2334444 443 12246899999
Q ss_pred ccHHHHHHHHHHHHH
Q psy8450 502 DQAHEIARLIRQYMS 516 (525)
Q Consensus 502 ~qa~ei~~LI~~Yi~ 516 (525)
.||++|..|+..=++
T Consensus 191 ~qge~I~~lfd~~~r 205 (224)
T 3ml4_A 191 AEGEQMSFLFDCIVR 205 (224)
T ss_dssp SCHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHc
Confidence 999999999876554
No 49
>1aqc_A X11; PTB domain; 2.30A {Homo sapiens} SCOP: b.55.1.2 PDB: 1x11_A*
Probab=90.46 E-value=1.2 Score=39.57 Aligned_cols=75 Identities=19% Similarity=0.233 Sum_probs=53.8
Q ss_pred CeEEEEEccCceEEeecCccceEEEeecccceeccccccCCCceEEEEEeccc----------------------ccceE
Q psy8450 439 DQQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNL----------------------FQQRV 496 (525)
Q Consensus 439 ~~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~----------------------~~~~~ 496 (525)
.++.|.|+.+||.++|++|++++..+|+..|.-+. +.+.. |-....+. .+-..
T Consensus 64 ~~V~L~IS~~gikv~d~~t~~il~~~~l~~ISf~a----D~~~~-FayIar~~~~~~~~~~n~~~~~~~~~~~~~~~~~C 138 (172)
T 1aqc_A 64 TEVDLFILTQRIKVLNADTQETMMDHPLRTISYIA----DIGNI-VVLMARRRIPRSNSQENVEASHPSQDGKRQYKMIC 138 (172)
T ss_dssp CEEEEEECSSEEEEEETTTCCEEEEEEGGGEEEEE----EETTE-EEEEECCC----------------------CEEEE
T ss_pred cEEEEEEECCeEEEEeCCCCceEeccccceEEEEe----eCCcE-EEEEecCCCccccccccccccccccccCCCCcEEE
Confidence 38999999999999999999999999999997542 22322 33222221 12356
Q ss_pred EEEecccHHHHHHHHHHHHHHH
Q psy8450 497 ARIQTDQAHEIARLIRQYMSLD 518 (525)
Q Consensus 497 ~~~~t~qa~ei~~LI~~Yi~~~ 518 (525)
..|++..|.+|+..|..=.++.
T Consensus 139 HVF~s~~A~~I~~tIGqAF~~a 160 (172)
T 1aqc_A 139 HVFESEDAQLIAQSIGQAFSVA 160 (172)
T ss_dssp EEEECTTHHHHHHHHHHHHHHH
T ss_pred EEEECccHHHHHHHHHHHHHHH
Confidence 8888888999999887644433
No 50
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens}
Probab=89.20 E-value=1.1 Score=36.45 Aligned_cols=58 Identities=7% Similarity=0.068 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHHh--cCCCC-CCChhhhhhccCcccccccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q psy8450 349 IVYDVAKLAALLHRA--ADMSH-PPAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKW 424 (525)
Q Consensus 349 ~~~~~~~LaAl~~~~--~d~~~-~~~~~~l~~~lP~~~~~~~~~~~~~w~~~I~~~~~~l~g~s~~~Ak~~fL~~~~~~ 424 (525)
+.++..+|-||.-|+ ||++. .|. +. . -..+.=.++|++++|+|+++|+..|++.+.++
T Consensus 31 s~e~~L~LYaLyKQAt~Gd~~~~~Pg-----------~~-----d--~~~~aKw~AW~~l~gms~eeA~~~YI~~v~~l 91 (106)
T 2wh5_A 31 SYEEMLRFYSYYKQATMGPCLVPRPG-----------FW-----D--PIGRYKWDAWNSLGKMSREEAMSAYITEMKLV 91 (106)
T ss_dssp CHHHHHHHHHHHHHHHHCSCCSCCCC-----------TT-----C--HHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhccCCCCCCCCC-----------cc-----c--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 568999999998776 67652 121 10 0 01122357899999999999999999998653
No 51
>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis}
Probab=89.18 E-value=0.2 Score=40.10 Aligned_cols=63 Identities=17% Similarity=0.258 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHh--cCCCCCCChhhhhhccCcccccccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-C
Q psy8450 349 IVYDVAKLAALLHRA--ADMSHPPAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKW-P 425 (525)
Q Consensus 349 ~~~~~~~LaAl~~~~--~d~~~~~~~~~l~~~lP~~~~~~~~~~~~~w~~~I~~~~~~l~g~s~~~Ak~~fL~~~~~~-p 425 (525)
+.++..+|-||.-|+ ||++.. -|. +. .. .-+.=.++|++++|+|+++|+..|++++.++ |
T Consensus 30 s~~~~L~LYaLyKQAt~Gd~~~~---------~Pg-~~---d~----~graKw~AW~~l~gmS~eeAm~~YI~lv~~l~~ 92 (96)
T 2lbb_A 30 SNDDKLCFYKYYKQATVGDCNKP---------KPG-ML---QL----QEKYKWEAWNALRGMSTESAKEAYVKLLDTLAP 92 (96)
T ss_dssp CTTTTTHHHHHHHHTTTSSCCCC---------CCC-SS---CS----HHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHCG
T ss_pred CHHHHHHHHHHHHHHhcCCCCCC---------CCC-cc---cH----HhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 446788899998776 566521 011 11 11 1233467899999999999999999998654 6
Q ss_pred CCC
Q psy8450 426 LFG 428 (525)
Q Consensus 426 ~yG 428 (525)
-||
T Consensus 93 ~~~ 95 (96)
T 2lbb_A 93 SWR 95 (96)
T ss_dssp GGT
T ss_pred hhc
Confidence 665
No 52
>4dbb_A Amyloid beta A4 precursor protein-binding family 1; X11S/mints, PTB domain, chimera protein, protein transport; HET: IPA GOL; 1.90A {Rattus norvegicus}
Probab=89.03 E-value=3 Score=36.64 Aligned_cols=77 Identities=17% Similarity=0.164 Sum_probs=53.3
Q ss_pred eEEEEEccCceEEeecCccceEEEeecccceeccccccCCCceEEEEEe---cccccceEEEEecccHHHHHHHHHHHHH
Q psy8450 440 QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKC---GNLFQQRVARIQTDQAHEIARLIRQYMS 516 (525)
Q Consensus 440 ~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~---g~~~~~~~~~~~t~qa~ei~~LI~~Yi~ 516 (525)
++.|-|+..||.+++++|++++..+++..|.-.. . ....+.+--+. +....-....|++..|.+|+..|..=.+
T Consensus 54 ~V~L~IS~~gIkv~d~~t~~~i~~~~l~~ISf~a-~--~~~~f~fIar~~~~~~~~~~~CHVF~~~~A~~I~~tigqAF~ 130 (162)
T 4dbb_A 54 EVDLFISTQRIKVLNADTQEPMMDHPLRTISYIA-D--IGNIVVLMARRRMPRSQYKMICHVFESEDAQLIAQSIGQAFS 130 (162)
T ss_dssp EEEEEEESSEEEEEETTTCCEEEEEEGGGEEEEE-E--ETTEEEEEEEECCSTTCEEEEEEEEECTTHHHHHHHHHHHHH
T ss_pred EEEEEEECCEEEEEECCCCcEEeeeecceeEEEE-E--CCCEEEEEeccCCCCCCCcEEEEEEECCCHHHHHHHHHHHHH
Confidence 7999999999999999999999999999996543 2 22212221111 1111235778888889999998876555
Q ss_pred HHh
Q psy8450 517 LDR 519 (525)
Q Consensus 517 ~~~ 519 (525)
+..
T Consensus 131 ~ay 133 (162)
T 4dbb_A 131 VAY 133 (162)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 53
>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens}
Probab=88.71 E-value=1.5 Score=36.40 Aligned_cols=59 Identities=12% Similarity=0.090 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHh--cCCCCCCChhhhhhccCcccccccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q psy8450 349 IVYDVAKLAALLHRA--ADMSHPPAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKW 424 (525)
Q Consensus 349 ~~~~~~~LaAl~~~~--~d~~~~~~~~~l~~~lP~~~~~~~~~~~~~w~~~I~~~~~~l~g~s~~~Ak~~fL~~~~~~ 424 (525)
+.++..+|-||.-|+ ||++.. -|. +.. -..+.=..+|++++|+|+++|+..|++.+.++
T Consensus 47 s~d~~L~LYaLyKQAT~Gd~~~~---------~Pg-~~d-------~~graKw~AW~~l~gmS~eeAm~~YI~~v~~l 107 (119)
T 3flv_A 47 TNEMMLKFYSFYKQATEGPCKLS---------RPG-FWD-------PIGRYKWDAWSSLGDMTKEEAMIAYVEEMKKI 107 (119)
T ss_dssp CHHHHHHHHHHHHHHHTCSCCSC---------CCC-TTC-------HHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCCCC---------CCC-ccC-------HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 568899999998876 566521 011 111 01123345899999999999999999987543
No 54
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=86.27 E-value=2.9 Score=32.30 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=39.5
Q ss_pred eeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEE
Q psy8450 222 RQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIV 271 (525)
Q Consensus 222 ~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~ 271 (525)
..-+||||++.-.|+|.+..|++|.+..++++-||.. +..+.|...
T Consensus 9 ~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~p----e~C~Vy~~~ 54 (86)
T 1wxm_A 9 TVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQ----DCCVVYRLI 54 (86)
T ss_dssp EEEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCCS----SSEEEEEES
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCH----HHeEEEEcC
Confidence 3346899999999999999999999999999999974 578888654
No 55
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=86.20 E-value=3.8 Score=32.20 Aligned_cols=47 Identities=19% Similarity=0.179 Sum_probs=40.0
Q ss_pred eeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEc
Q psy8450 222 RQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVE 272 (525)
Q Consensus 222 ~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~ 272 (525)
..-++|||++.-.|+|.+..|++|.+..++++-||.. +..+.|....
T Consensus 19 ~irvhLPNqQrT~V~VrpG~tlrdAL~KaLk~R~L~p----e~C~Vy~~~~ 65 (95)
T 2l05_A 19 IVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIP----ECCAVYRIQD 65 (95)
T ss_dssp EEEEEETTTEEEEEECCTTCBHHHHHHHHHHHHTCCG----GGEEEEEEET
T ss_pred EEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCH----HHcEEEEcCC
Confidence 3336899999999999999999999999999999965 5788886643
No 56
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0
Probab=86.06 E-value=2.6 Score=34.27 Aligned_cols=58 Identities=12% Similarity=0.075 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHh--cCCCCCCChhhhhhccCcccccccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q psy8450 349 IVYDVAKLAALLHRA--ADMSHPPAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSK 423 (525)
Q Consensus 349 ~~~~~~~LaAl~~~~--~d~~~~~~~~~l~~~lP~~~~~~~~~~~~~w~~~I~~~~~~l~g~s~~~Ak~~fL~~~~~ 423 (525)
+.++..+|-||.-|+ ||++.. -|. +.. -..+.=.++|++++|+|+++|+..|++.+.+
T Consensus 27 s~~~~L~LYalyKQAt~Gd~~~~---------~Pg-~~d-------~~~raKw~AW~~l~gmS~eeA~~~YI~~v~~ 86 (106)
T 3fp5_A 27 TQDEQLYFYKYFKQATVGDVNIS---------RPG-LMD-------FTGKAKWDAWKSVEGTSKEVAYQKYVEKLLE 86 (106)
T ss_dssp CHHHHHHHHHHHHHHHTCSCCSC---------CCC-TTC-------HHHHHHHHHHHTTTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCCCC---------CCC-ccc-------hHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 568889999998876 566521 121 111 1112334689999999999999999999864
No 57
>1n3h_A SHC transforming protein; free protein, beta sandwich, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.2 PDB: 1oy2_A 2l1c_A* 1shc_A*
Probab=84.63 E-value=1.3 Score=40.74 Aligned_cols=71 Identities=8% Similarity=0.131 Sum_probs=48.1
Q ss_pred eEEEEEccCceEEeecCccceEEEeecccceeccccccCCCceEEEEEeccc-ccceEEEEec-c-cHHHHHHHH
Q psy8450 440 QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNL-FQQRVARIQT-D-QAHEIARLI 511 (525)
Q Consensus 440 ~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~-~~~~~~~~~t-~-qa~ei~~LI 511 (525)
++.|.|+..||.++|++|++++..+|...|+-+.....++. -+|-....+. ..-....|++ + .|.+|...|
T Consensus 121 ~V~L~IS~~gIkv~d~~t~~~i~~~~i~~ISf~a~~d~~~~-~~FafIar~~~~~~~CHVF~cs~~~A~~I~~tI 194 (207)
T 1n3h_A 121 PITLTVSTSSLNLMAADCKQIIANHHMQSISFASGGDPDTA-EYVAYVAKDPVNQRACHILECPEGLAQDVISTI 194 (207)
T ss_dssp EEEEEEETTEEEEEETTTTSCBCCCSCCCCSSSCSSSTTSS-SCEEEEECCSSSCCEEEEEECSSSTHHHHHHCC
T ss_pred eEEEEEECCeEEEEeCCCCceeeeeccceEEEEeccCCCcC-CEEEEEecCCCCCEEEEEEEcCHHHHHHHHHHH
Confidence 89999999999999999999999999999965431212222 1233323332 2346778873 4 488887644
No 58
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=84.03 E-value=2.6 Score=34.03 Aligned_cols=76 Identities=14% Similarity=0.172 Sum_probs=53.1
Q ss_pred ceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEc-CCceeecCCCcch-hhhhhHHHhhcC
Q psy8450 220 SKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVE-GDAFTMPLAKEEY-ILDVTTELHKNQ 297 (525)
Q Consensus 220 ~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~-~~~~~~~L~~~~~-i~Dvl~~~e~~~ 297 (525)
+.+.| +.+|.++.++.+...+||+||+..++++++..+ ++.-|..... |+. +.|++++. |...+ .
T Consensus 10 i~~~V-y~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~----e~l~Lv~v~ssGEk--~~lqp~d~si~tsL------~ 76 (104)
T 1wgy_A 10 IFCHV-YITEHSYVSVKAKVSSIAQEILKVVAEKIQYAE----EDLALVAITFSGEK--HELQPNDLVISKSL------E 76 (104)
T ss_dssp CCEEE-ECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCG----GGEEEEEECSSCCC--CBCCTTSBSSCCSS------C
T ss_pred eEEEE-EeccCceEEEEEeccchHHHHHHHHHHHhcCCc----cceEEEEEccCCcE--eecCCcceEEEeec------c
Confidence 44565 578999999999999999999999999999765 4688888773 432 34555543 33322 2
Q ss_pred CcEEEEEeeec
Q psy8450 298 QVFYLIFCRSV 308 (525)
Q Consensus 298 ~~~~l~frr~~ 308 (525)
.+-+|+..++-
T Consensus 77 ~NgRLfvc~kd 87 (104)
T 1wgy_A 77 ASGRIYVYRKD 87 (104)
T ss_dssp SSCEEEEEECC
T ss_pred ccceEEEeehH
Confidence 34567776653
No 59
>3dxe_A Amyloid beta A4 protein-binding family B member 1; alzheimer'S disease, APP, AICD, Fe65, PTB domain, alternative splicing, polymorphism, alzheimer disease, apoptosis; 2.00A {Homo sapiens} SCOP: b.55.1.0 PDB: 3dxd_A 3dxc_A
Probab=83.80 E-value=7.1 Score=33.32 Aligned_cols=82 Identities=12% Similarity=0.075 Sum_probs=55.5
Q ss_pred CCeEEEEEccCceEEeecCccceEEEeecccceeccccccCCCceEEEEEeccc-ccceEEEEecccHHHHHHHHHHHHH
Q psy8450 438 GDQQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNL-FQQRVARIQTDQAHEIARLIRQYMS 516 (525)
Q Consensus 438 ~~~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~-~~~~~~~~~t~qa~ei~~LI~~Yi~ 516 (525)
+.++.|.|+..||.+.+.++++++...+...|+-.+. ..+....-|-.+.|+. ..=..|+++.+ |.+++.-|..=+.
T Consensus 45 ~~~v~l~Vs~~gi~v~~~~t~e~l~~~~i~~ISFcg~-~kd~k~FafI~~~~~~~f~CHvF~c~~~-A~~vs~aV~~Af~ 122 (140)
T 3dxe_A 45 WTPSHVSVAPATLTILHQQTEAVLGECRVRFLSFLAV-GRDVHTFAFIMAAGPASFCCHMFWCEPN-AASLSEAVQAACM 122 (140)
T ss_dssp CEEEEEEECSSEEEEEETTTCCEEEEEEGGGEEEEEE-CSSTTEEEEEEEEETTEEEEEEEEEESC-SHHHHHHHHHHHH
T ss_pred CceEEEEEcCCEEEEEecCCcceeeeccEEEEeeecc-CCCCcEEEEEecCCCccEEEEEEecCcc-hHHHHHHHHHHHH
Confidence 3479999999999999999999999999999865554 3334434444444421 11135556544 7788888877666
Q ss_pred HHhhh
Q psy8450 517 LDRQK 521 (525)
Q Consensus 517 ~~~~~ 521 (525)
+..++
T Consensus 123 l~Yqk 127 (140)
T 3dxe_A 123 LRYQK 127 (140)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65554
No 60
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=81.18 E-value=3.7 Score=31.45 Aligned_cols=41 Identities=17% Similarity=0.123 Sum_probs=33.3
Q ss_pred CCceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCC
Q psy8450 218 RNSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNND 259 (525)
Q Consensus 218 ~~~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~ 259 (525)
.++.+.| ...+|....+.|++.+|+.++-+.|+.+.|++..
T Consensus 11 ~~m~i~v-k~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~ 51 (88)
T 3dbh_I 11 GSMLIKV-KTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQ 51 (88)
T ss_dssp CCEEEEE-ECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGG
T ss_pred CcEEEEE-EcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHH
Confidence 3455554 4557777889999999999999999999999854
No 61
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=80.88 E-value=2.8 Score=31.75 Aligned_cols=43 Identities=16% Similarity=0.310 Sum_probs=38.1
Q ss_pred EecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEE
Q psy8450 225 YRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIV 271 (525)
Q Consensus 225 v~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~ 271 (525)
+||||++.-.|+|.+..|++|.+..++++-||.. +..+.|...
T Consensus 6 vhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~p----e~C~V~~~~ 48 (77)
T 1c1y_B 6 VFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQP----ECCAVFRLL 48 (77)
T ss_dssp EEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCG----GGEEEEEEE
T ss_pred EECCCCceEEEEecCCcCHHHHHHHHHHHcCCCH----HHeEEEEec
Confidence 5899999999999999999999999999999965 578888654
No 62
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=80.73 E-value=5.3 Score=33.03 Aligned_cols=80 Identities=15% Similarity=0.210 Sum_probs=55.5
Q ss_pred ceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCC--CCcceEEEEEEc-CCceeecCCCcc-hhhhhhHHHhh
Q psy8450 220 SKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDL--EMEEFSLYCIVE-GDAFTMPLAKEE-YILDVTTELHK 295 (525)
Q Consensus 220 ~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~--~~~~FsL~~~~~-~~~~~~~L~~~~-~i~Dvl~~~e~ 295 (525)
+.+.| +.+|.++.++.+...++|+||+..++++++..+.. ..++.-|..+.. |+. +.|++++ .|...+
T Consensus 10 i~~~V-Y~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk--~vlqp~d~sv~tsL----- 81 (120)
T 2dhz_A 10 IFCRV-YMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEK--VLLQPTEDCVFTAL----- 81 (120)
T ss_dssp EEECE-ECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCC--EECCTTCSCHHHHS-----
T ss_pred EEEEE-EeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcE--eecCCcceEEEeec-----
Confidence 44564 57899999999999999999999999999986521 014789998874 443 3455554 333333
Q ss_pred cCCcEEEEEeeec
Q psy8450 296 NQQVFYLIFCRSV 308 (525)
Q Consensus 296 ~~~~~~l~frr~~ 308 (525)
..+-+|+.+++-
T Consensus 82 -~~NgRLfvc~kd 93 (120)
T 2dhz_A 82 -GINSHLFACTRD 93 (120)
T ss_dssp -CSSEEEEEECTT
T ss_pred -cccceEEEeehH
Confidence 345678777663
No 63
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=80.68 E-value=1.5 Score=44.10 Aligned_cols=63 Identities=13% Similarity=0.097 Sum_probs=43.9
Q ss_pred ceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcc
Q psy8450 220 SKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEE 284 (525)
Q Consensus 220 ~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~ 284 (525)
+... ++++ +..+.+.+++.+|+.|+|..|.+++.-.+...+..||||...++..--.||..+.
T Consensus 4 ~~~~-~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~ 66 (371)
T 3ivf_A 4 LSLK-ISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGK 66 (371)
T ss_dssp EEEE-EEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTS
T ss_pred EEEE-EEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCC
Confidence 3445 4566 8889999999999999999999998643221237999999764322234555443
No 64
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*
Probab=79.69 E-value=6.2 Score=37.56 Aligned_cols=72 Identities=13% Similarity=0.176 Sum_probs=53.1
Q ss_pred eEEEEEccCceEEeecCccceEEEeecccceeccccccCCCceEEEEEecc--cccceEEEEecccH---HHHHHHHHHH
Q psy8450 440 QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGN--LFQQRVARIQTDQA---HEIARLIRQY 514 (525)
Q Consensus 440 ~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~--~~~~~~~~~~t~qa---~ei~~LI~~Y 514 (525)
+-.|.+....|.+.+.++..++..+||..|.+++.. + .+|.+..|- ...+-.|.|+|.++ .+|...|-+=
T Consensus 179 ~y~l~l~~~~l~L~~~~~~~~~~~wpl~~lRr~G~~---~--~~F~fEaGR~c~~G~G~f~f~t~~~~i~~~i~~~i~~~ 253 (264)
T 1qqg_A 179 IYRLCLTSKTISFVKLNSEAAAVVLQLMNIRRCGHS---E--NFFFIEVGRSAVTGPGEFWMQVDDSVVAQNMHETILEA 253 (264)
T ss_dssp EEEEEECSSEEEEEETTCSSCSEEEEGGGEEEEEEE---T--TEEEEEECTTSTTCSEEEEEECSCHHHHHHHHHHHHHH
T ss_pred ceEEEEeCcEEEEEecCCCcceEEeehhheeccccc---C--cEEEEEecCCCCCCCcEEEEecCcHHHHHHHHHHHHHH
Confidence 788999999999999998999999999999988753 3 355566662 33356899999994 4444444433
Q ss_pred HH
Q psy8450 515 MS 516 (525)
Q Consensus 515 i~ 516 (525)
++
T Consensus 254 ~~ 255 (264)
T 1qqg_A 254 MR 255 (264)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 65
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=79.55 E-value=9.9 Score=38.33 Aligned_cols=76 Identities=20% Similarity=0.158 Sum_probs=52.9
Q ss_pred eEEEEEccCceEEeecCccceEEEeecccceeccccccCCCceEEEEE-eccccc--------------------ceEEE
Q psy8450 440 QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMK-CGNLFQ--------------------QRVAR 498 (525)
Q Consensus 440 ~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~-~g~~~~--------------------~~~~~ 498 (525)
++.|.|+.+||.+++++|++++..+++..|+-. .+.+..+.-|. -..... ..+..
T Consensus 67 ~v~l~IS~~gi~v~~~~t~~~~~~~~l~~IS~~----~d~~~~~~~iak~~~~~~~~~~~~~~~~~~~~~~~~~~~~Chv 142 (388)
T 3suz_A 67 EVDLFISTQRIKVLNADTQETMMDHALRTISYI----ADIGNIVVLMARRRMPRSASQDCIETTPGAQEGKKQYKMICHV 142 (388)
T ss_dssp EEEEEECSSEEEEEETTTCCEEEEEEGGGEEEE----EECSSEEEEEEEECCCCCC-------------CCCCEEEEEEE
T ss_pred eEEEEEEeceEEEEecCCcChhhhccccceeEE----eecCceEEEEEecCCCccccccccccCccccccccccceEEEE
Confidence 799999999999999999999999999998532 23333222221 111111 11889
Q ss_pred EecccHHHHHHHHHHHHHHHh
Q psy8450 499 IQTDQAHEIARLIRQYMSLDR 519 (525)
Q Consensus 499 ~~t~qa~ei~~LI~~Yi~~~~ 519 (525)
|++..|.+|+.-|.+=.++..
T Consensus 143 F~s~~a~~i~~ti~qaf~~~y 163 (388)
T 3suz_A 143 FESEDAQLIAQSIGQAFSVAY 163 (388)
T ss_dssp EECTTHHHHHHHHHHHHHHHH
T ss_pred ecccCHHHHHHHHHHHHHHHh
Confidence 999989999988876554443
No 66
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=78.45 E-value=3.4 Score=31.33 Aligned_cols=46 Identities=9% Similarity=0.165 Sum_probs=35.8
Q ss_pred CceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 219 NSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 219 ~~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
.+.+.| ..++|....+.+++.+|+.|+-+.|+++.|++.. ..-|+.
T Consensus 3 ~m~i~v-k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~----~qrL~~ 48 (85)
T 3mtn_B 3 HMQIFV-KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPD----QQRLIF 48 (85)
T ss_dssp CEEEEE-ECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGG----GCEEEE
T ss_pred eEEEEE-EcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChH----HEEEEE
Confidence 345553 4567887889999999999999999999999864 345553
No 67
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=78.13 E-value=3.6 Score=32.51 Aligned_cols=37 Identities=11% Similarity=0.041 Sum_probs=32.5
Q ss_pred eEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCC
Q psy8450 223 QLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNND 259 (525)
Q Consensus 223 ~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~ 259 (525)
..|..++|....+++++..|+.++-+.|+.+.|++..
T Consensus 24 I~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~ 60 (93)
T 3plu_A 24 VVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPN 60 (93)
T ss_dssp EEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGG
T ss_pred EEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHH
Confidence 3456678888999999999999999999999999874
No 68
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=75.84 E-value=9.2 Score=30.13 Aligned_cols=47 Identities=19% Similarity=0.188 Sum_probs=39.6
Q ss_pred ceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEE
Q psy8450 220 SKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIV 271 (525)
Q Consensus 220 ~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~ 271 (525)
..++ ++|||++.-.|+|.+..|++|.+..+.++-||.. +..+.|...
T Consensus 14 ~~ir-vhLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~p----e~C~Vy~~~ 60 (96)
T 3ny5_A 14 PIVR-VFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIP----ECCAVYRIQ 60 (96)
T ss_dssp CEEE-EEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCG----GGEEEEECC
T ss_pred CEEE-EECCCCceEEEEecCCcCHHHHHHHHHHHcCCCh----HHeEEEEcc
Confidence 3445 5799999999999999999999999999999965 578888653
No 69
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=74.23 E-value=3.5 Score=31.31 Aligned_cols=45 Identities=9% Similarity=0.180 Sum_probs=35.4
Q ss_pred ceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 220 SKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 220 ~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
+.+.| ..++|....+.+++.+|+.++-+.|+++.|++.. ..-|+.
T Consensus 4 m~i~v-k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~----~qrL~~ 48 (85)
T 3n3k_B 4 MRIVV-KTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPD----QQRLIF 48 (85)
T ss_dssp CEEEE-ECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGG----GEEEEE
T ss_pred EEEEE-EeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHH----HEEEEE
Confidence 44553 4557777889999999999999999999999864 455654
No 70
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=73.83 E-value=7.7 Score=31.14 Aligned_cols=43 Identities=16% Similarity=0.310 Sum_probs=38.2
Q ss_pred EecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEE
Q psy8450 225 YRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIV 271 (525)
Q Consensus 225 v~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~ 271 (525)
+||||+..-.|+|.+..|++|++..+.++-||.. +..+.|...
T Consensus 23 ~hLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~p----e~C~Vy~~~ 65 (107)
T 1rrb_A 23 VFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQP----ECCAVFRLL 65 (107)
T ss_dssp EECTTTCCEEEECCTTCBHHHHHHHHHHHHTCCT----TTEEEEECC
T ss_pred EECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCH----HHceeEEcc
Confidence 6899999899999999999999999999999975 578888653
No 71
>1wgu_A APBB2, amyloid beta (A4) precursor protein-bindin, family B, member 2; phosphotyrosine-interaction domain, amyloid disease, structural genomics; NMR {Mus musculus} SCOP: b.55.1.2 PDB: 2roz_B
Probab=73.41 E-value=21 Score=30.18 Aligned_cols=76 Identities=9% Similarity=0.007 Sum_probs=49.7
Q ss_pred CCeEEEEEccCceEEeecCc-cceEEEeecccceeccccccCCCceEEEEEecccccceEEEEec-ccHHHHHHHHHHHH
Q psy8450 438 GDQQILALNKHGVHFLNLLT-HETISSVPYGDVISTRKVRAESGTLYLEMKCGNLFQQRVARIQT-DQAHEIARLIRQYM 515 (525)
Q Consensus 438 ~~~~~LaIn~~Gi~~l~~~t-k~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~~~~~~~~~~t-~qa~ei~~LI~~Yi 515 (525)
+.++.|.|+..||.+.+.++ ++++...+...|+-.+ ...+.....|-.+.+ ..+-....|.. +.|.+++..|..=+
T Consensus 53 ~~~v~l~Vs~~gi~v~~~~~~~~~l~~~~l~~ISFc~-~d~~~k~FaFI~~~~-~~~f~CHvF~c~~~A~~vs~aV~~A~ 130 (136)
T 1wgu_A 53 WPSVNMNVADATVTVISEKNEEEVLVECRVRFLSFMG-VGKDVHTFAFIMDTG-NQRFECHVFWCEPNAANVSEAVQAAC 130 (136)
T ss_dssp SCEEEEEEETTEEEEECSSCSSCEEEEEETTTEEEEE-ECSSTTCEEEEEECS-SSCEEEEEEECSSCTHHHHHHHHHHH
T ss_pred CceEEEEEccCEEEEEecCCCCceeccceEEEeeeEe-cCCCCcEEEEEEcCC-CccEEEEEEEcCcchHHHHHHHHHHH
Confidence 45799999999999999987 4899999999986544 332333333444434 22223334433 35888888876533
No 72
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=72.74 E-value=5.7 Score=29.20 Aligned_cols=41 Identities=10% Similarity=0.191 Sum_probs=33.5
Q ss_pred EecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 225 YRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 225 v~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
+..++|....+.+++.+|+.++-+.|+++.|++.. ..-|+.
T Consensus 5 vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~----~q~L~~ 45 (76)
T 3a9j_A 5 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPD----QQRLIF 45 (76)
T ss_dssp EEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGG----GEEEEE
T ss_pred EEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHH----HeEEEE
Confidence 34567777889999999999999999999999753 456654
No 73
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=72.61 E-value=6.1 Score=29.04 Aligned_cols=41 Identities=20% Similarity=0.149 Sum_probs=33.4
Q ss_pred EecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 225 YRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 225 v~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
+..++|....+++++.+|+.++-+.|+++.|++.. ..-|+.
T Consensus 5 vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~----~q~L~~ 45 (76)
T 1ndd_A 5 VKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQ----QQRLIY 45 (76)
T ss_dssp EECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGG----GEEEEE
T ss_pred EECCCCCEEEEEECCCChHHHHHHHHHHHHCcChH----HEEEEE
Confidence 44567877889999999999999999999999853 455654
No 74
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=72.54 E-value=6.7 Score=29.35 Aligned_cols=46 Identities=20% Similarity=0.164 Sum_probs=35.9
Q ss_pred CceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 219 NSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 219 ~~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
++.+. +..++|....+.|++.+|+.++-+.|+.+.|++.. ..-|+.
T Consensus 4 ~m~i~-Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~----~qrL~~ 49 (79)
T 3phx_B 4 PLSIL-VRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDD----LFWLTF 49 (79)
T ss_dssp CEEEE-EECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGG----GEEEEE
T ss_pred CEEEE-EEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHH----HEEEEE
Confidence 34454 45668888889999999999999999999999864 355554
No 75
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=71.42 E-value=2.3 Score=32.62 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=37.2
Q ss_pred CceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEE
Q psy8450 219 NSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIV 271 (525)
Q Consensus 219 ~~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~ 271 (525)
++.++ +.-++|+.+ +++++.+|+.|+.+.|++++++... .|++++..
T Consensus 4 ~m~lR-vrs~~G~~R-i~v~~~~t~~~L~~~I~~~~~i~~~----~~~l~~~~ 50 (80)
T 2pjh_A 4 SIIIR-VQSPDGVKR-ITATKRETAATFLKKVAKEFGFQNN----GFSVYINR 50 (80)
T ss_dssp CCCCE-EECSSEEEE-CCCCSSCCHHHHHHHHHHHTCCCTT----TCCCCCSC
T ss_pred cEEEE-EECCCCCEE-EEcCCcChHHHHHHHHHHHcCCCCC----cceEEecC
Confidence 35566 467899855 6899999999999999999998763 67777643
No 76
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=69.03 E-value=5.8 Score=31.33 Aligned_cols=46 Identities=20% Similarity=0.136 Sum_probs=35.9
Q ss_pred CceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 219 NSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 219 ~~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
.+.+. +...+|....+.|++++|+.++.+.|+.+.|++.. ..-|+.
T Consensus 21 ~m~I~-Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~----~qrLif 66 (97)
T 1wyw_B 21 YIKLK-VIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN----SLRFLF 66 (97)
T ss_dssp EEEEE-EECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGG----GEEEEE
T ss_pred cEEEE-EEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChh----hEEEEE
Confidence 34444 44567887889999999999999999999999764 455554
No 77
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=68.54 E-value=7.8 Score=30.57 Aligned_cols=41 Identities=10% Similarity=0.194 Sum_probs=33.1
Q ss_pred CCceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCC
Q psy8450 218 RNSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNND 259 (525)
Q Consensus 218 ~~~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~ 259 (525)
..+.+.| ...+|....+.|++.+|+.++-+.|+++.|++..
T Consensus 21 ~~m~I~V-k~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 61 (98)
T 4hcn_B 21 RPMQIFV-KTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPD 61 (98)
T ss_dssp -CCEEEE-EETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGG
T ss_pred CeEEEEE-EeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChh
Confidence 3455654 4457777899999999999999999999998764
No 78
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=67.45 E-value=10 Score=29.32 Aligned_cols=40 Identities=8% Similarity=0.147 Sum_probs=32.7
Q ss_pred CceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCC
Q psy8450 219 NSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNND 259 (525)
Q Consensus 219 ~~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~ 259 (525)
.+.+. +...+|....+.|++.+|+.++-+.|+++.|+...
T Consensus 17 ~m~i~-Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 56 (91)
T 3v6c_B 17 SMQIF-VNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPD 56 (91)
T ss_dssp SEEEE-EECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGG
T ss_pred eEEEE-EEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChh
Confidence 34444 34568887889999999999999999999999864
No 79
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.84 E-value=12 Score=27.93 Aligned_cols=45 Identities=13% Similarity=0.130 Sum_probs=34.5
Q ss_pred ceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 220 SKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 220 ~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
+.+. +...+|....+.+++.+|+.++-+.|+++.|++.. ..-|+.
T Consensus 8 m~i~-vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~----~qrL~~ 52 (81)
T 2dzi_A 8 MQLT-VKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVR----QQRLLF 52 (81)
T ss_dssp EEEE-EEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTT----TCEEEE
T ss_pred EEEE-EEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHH----HEEEEE
Confidence 4444 34567777789999999999999999999999764 345544
No 80
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=65.68 E-value=9 Score=30.09 Aligned_cols=41 Identities=10% Similarity=0.191 Sum_probs=33.3
Q ss_pred EecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 225 YRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 225 v~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
+..++|....+.|++.+|+.++-+.|+++.|++.. ..-|+.
T Consensus 5 Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~----~qrL~~ 45 (98)
T 1yx5_B 5 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPD----QQRLIF 45 (98)
T ss_dssp EEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGG----GEEEEE
T ss_pred EEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChh----hEEEEE
Confidence 34567777889999999999999999999999764 455554
No 81
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=64.78 E-value=11 Score=29.01 Aligned_cols=45 Identities=9% Similarity=0.112 Sum_probs=34.4
Q ss_pred ceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 220 SKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 220 ~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
+.+.+. ..+|....+++++.+|+.++-+.|+++.|++.. ..-|+.
T Consensus 10 ~~i~v~-~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~----~qrL~~ 54 (88)
T 1sif_A 10 LQLFIK-TLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPD----QQRLIF 54 (88)
T ss_dssp CEEEEE-ETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGG----GCEEEE
T ss_pred eEEEEE-eCCCCEEEEEECCCChHHHHHHHHHHHHCcChh----hEEEEE
Confidence 444444 446777889999999999999999999999764 455554
No 82
>1wvh_A Tensin, tensin1; beta sandwich, cell adhesion; 1.50A {Gallus gallus} SCOP: b.55.1.2 PDB: 2gjy_A
Probab=64.53 E-value=33 Score=28.87 Aligned_cols=76 Identities=13% Similarity=0.127 Sum_probs=49.4
Q ss_pred eEEEEEccCceEEeecCccc-eEEEeecccceeccccccCC---------CceEEEE--Ee-cccccceEEEE---eccc
Q psy8450 440 QQILALNKHGVHFLNLLTHE-TISSVPYGDVISTRKVRAES---------GTLYLEM--KC-GNLFQQRVARI---QTDQ 503 (525)
Q Consensus 440 ~~~LaIn~~Gi~~l~~~tk~-~l~~~~~~~I~s~~~~~~~~---------~~~~~~i--~~-g~~~~~~~~~~---~t~q 503 (525)
++-+=|+.+||.+.|+.+|. .-..||...|.-.+..+.+. +.-.|-+ +- ++..+....+| +..|
T Consensus 41 ~vh~kVS~qGItLtD~~rk~ffRrhypl~~VsfCa~dP~~r~w~~~~~~~~~riFGFVar~~~~~~~n~CHvF~e~d~~q 120 (134)
T 1wvh_A 41 IVHFKVSAQGITLTDNQRKLFFRRHYPLNTVTFCDLDPQERKWTKTDGSGPAKLFGFVARKQGSTTDNVCHLFAELDPDQ 120 (134)
T ss_dssp EEEEEEETTEEEEEESSSCSSCEEEEEGGGEEEEEECTTCCEEECSSSSCEEEEEEEEECC-CCTTCEEEEEEEECCTTS
T ss_pred EEEEEEEcCCCeEEccCcceEEEEecccCcEEEecCCcccccccccccCCCceEEEEEEccCCCCCCeeEEEecccCCCC
Confidence 68899999999999999876 35789999997665543211 0122222 21 22233457778 4444
Q ss_pred -HHHHHHHHHHHH
Q psy8450 504 -AHEIARLIRQYM 515 (525)
Q Consensus 504 -a~ei~~LI~~Yi 515 (525)
|.+|.++|+..+
T Consensus 121 pa~~Iv~~v~~~~ 133 (134)
T 1wvh_A 121 PAAAIVNFVSRVM 133 (134)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhc
Confidence 889988887543
No 83
>3hsa_A Pleckstrin homology domain; YP_926556.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE MLY; 1.99A {Shewanella amazonensis SB2B} SCOP: b.55.1.13 PDB: 3dcx_A*
Probab=64.49 E-value=35 Score=28.37 Aligned_cols=70 Identities=17% Similarity=0.286 Sum_probs=45.7
Q ss_pred eEEEEEccCceEEeecCccceEEEeecccceeccccccCCCc----eEEEEEecccccceEEEEec-ccHHHHHHHHHHH
Q psy8450 440 QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGT----LYLEMKCGNLFQQRVARIQT-DQAHEIARLIRQY 514 (525)
Q Consensus 440 ~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~----~~~~i~~g~~~~~~~~~~~t-~qa~ei~~LI~~Y 514 (525)
.-++-++.+|+. .+|..+.++||+.|.+|.. .+.|. .-+.+.+++...+..+.|.- .+..++..+|+.|
T Consensus 50 kRLI~vD~QG~T----GkK~~~~siPY~sI~~~si--ETAG~fDlDaElki~isg~~~pi~~~f~k~~di~~i~k~La~~ 123 (126)
T 3hsa_A 50 XRLILIDXQGVT----GXXVSYHSIPYXAIVHFQV--ETAGTFDMDAELXLWISGQHEPLVXELXRGTDVVGIQXTIARY 123 (126)
T ss_dssp SEEEEEEEESTT----SCEEEEEEEEGGGEEEEEE--EEESTTSCEEEEEEEETTCSSCEEEEECTTSCHHHHHHHHHHH
T ss_pred chheEEecCcCc----ccceEEEEeccceeeEEEE--eccccccCCceEEEEEcCCceEEEEeccCcccHHHHHHHHHHH
Confidence 556666666652 3367788999999998753 22232 33555555544445666653 3699999999998
Q ss_pred H
Q psy8450 515 M 515 (525)
Q Consensus 515 i 515 (525)
+
T Consensus 124 v 124 (126)
T 3hsa_A 124 A 124 (126)
T ss_dssp H
T ss_pred h
Confidence 6
No 84
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=64.23 E-value=7 Score=31.60 Aligned_cols=41 Identities=7% Similarity=0.088 Sum_probs=33.3
Q ss_pred CCCceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCC
Q psy8450 217 GRNSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNN 258 (525)
Q Consensus 217 ~~~~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~ 258 (525)
++.|.+.|. -.+|....++|+++.||.|+-+.|.++.|+..
T Consensus 5 ~~~M~I~Vk-~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~ 45 (105)
T 1v2y_A 5 SSGMTVRVC-KMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQ 45 (105)
T ss_dssp CCSEEEEEE-CSSSCEEEEEECTTCBHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEE-ecCCCEEEEEECCCChHHHHHHHHHHHhCCCc
Confidence 445666654 44777789999999999999999999998754
No 85
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=64.17 E-value=8.8 Score=28.64 Aligned_cols=45 Identities=20% Similarity=0.149 Sum_probs=34.8
Q ss_pred ceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 220 SKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 220 ~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
+.+. +...+|....++|++++|+.++.+.++++.|++.. ..-|+.
T Consensus 4 m~i~-vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~----~qrL~~ 48 (79)
T 2uyz_B 4 IKLK-VIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN----SLRFLF 48 (79)
T ss_dssp EEEE-EECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGG----GEEEEE
T ss_pred EEEE-EECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcc----cEEEEE
Confidence 3344 34567777889999999999999999999999764 455544
No 86
>1lfd_A Ralgds; RAL, effector interaction; HET: GNP; 2.10A {Rattus norvegicus} SCOP: d.15.1.5 PDB: 2b3a_A
Probab=64.16 E-value=27 Score=26.93 Aligned_cols=70 Identities=13% Similarity=0.209 Sum_probs=49.7
Q ss_pred cEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEc-CCceeecCCCcchhhhhhHHHhhcCCcEEEEEeee
Q psy8450 231 SETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVE-GDAFTMPLAKEEYILDVTTELHKNQQVFYLIFCRS 307 (525)
Q Consensus 231 ~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~-~~~~~~~L~~~~~i~Dvl~~~e~~~~~~~l~frr~ 307 (525)
.++.+.+.+...+..|++....+.+|...+ .+.|.|....+ |+++..| .+-.++=.++. ...+.|.+|+|
T Consensus 17 ~YKSI~ltsqDrtp~vI~~al~Khnl~~~~-~~~y~L~Q~Lp~~kEL~iP--d~aNvfYAm~~----~~~~~FvLR~k 87 (87)
T 1lfd_A 17 MYKSILVTSQDKAPTVIRKAMDKHNLDEDE-PEDYELLQIISEDHKLKIP--ENANVFYAMNS----AANYDFILKKR 87 (87)
T ss_dssp EEEEEEEETTCBHHHHHHHHHHHTTCCSSC-GGGEEEEEESSSSCEEECC--TTSBHHHHSCT----TSCCEEEEEEC
T ss_pred EEEEEEEecCCCcHHHHHHHHHHcCCCCCC-ccceEEEEEcCCCCEEecC--CCccEEEEEcC----CCCcceEEecC
Confidence 477899999999999999999999999753 38999999884 5544333 44444333321 24667777764
No 87
>2ysz_A Amyloid beta A4 precursor protein-binding family B member 2 and amyloid beta A4 protein...; chimera, Fe65L, PID domain, amyloid precursor protein; NMR {Mus musculus}
Probab=63.88 E-value=19 Score=32.23 Aligned_cols=81 Identities=10% Similarity=-0.008 Sum_probs=52.6
Q ss_pred CCeEEEEEccCceEEeecCc-cceEEEeecccceeccccccCCCceEEEEEecccccc--eEEEEecccHHHHHHHHHHH
Q psy8450 438 GDQQILALNKHGVHFLNLLT-HETISSVPYGDVISTRKVRAESGTLYLEMKCGNLFQQ--RVARIQTDQAHEIARLIRQY 514 (525)
Q Consensus 438 ~~~~~LaIn~~Gi~~l~~~t-k~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~~~~--~~~~~~t~qa~ei~~LI~~Y 514 (525)
+.++.|.|+..||.+.+.++ ++++...+...|+-++. ..+.....|-.+.+ ..+- ..|.++ +.|.+|+..|..=
T Consensus 53 ~~~V~L~VS~~gI~v~d~~t~~e~l~~~~I~~ISFc~v-d~d~k~FaFI~~~~-~~~f~CHVF~c~-k~A~~vs~aV~~A 129 (185)
T 2ysz_A 53 WPSVNMNVADATVTVISEKNEEEVLVECRVRFLSFMGV-GKDVHTFAFIMDTG-NQRFECHVFWCE-PNAANVSEAVQAA 129 (185)
T ss_dssp SCEEEEEEETTEEEEEESSCSSCEEEEECTTTCCEEEC-CSSTTEEEEEEESS-SSCEEEEEEEES-SCSTTHHHHHHHH
T ss_pred CceEEEEEecCEEEEEecCCCcceeeeccEEEeeeecc-CCCCcEEEEEecCC-CccEEEEEEEcc-CchHHHHHHHHHH
Confidence 44799999999999999988 48899999999865443 22333233433333 1122 234443 3477899888876
Q ss_pred HHHHhhh
Q psy8450 515 MSLDRQK 521 (525)
Q Consensus 515 i~~~~~~ 521 (525)
+.+..++
T Consensus 130 f~l~yQk 136 (185)
T 2ysz_A 130 CSGPSSG 136 (185)
T ss_dssp HHSCCCC
T ss_pred HHHHHHH
Confidence 6554443
No 88
>2dyq_A Amyloid beta A4 precursor protein-binding family 3; phosphotyrosine-interaction domain (PTB/PID alzheimer'S disease, structural genomics, NPPSFA; 3.10A {Homo sapiens}
Probab=63.46 E-value=43 Score=28.57 Aligned_cols=82 Identities=13% Similarity=0.053 Sum_probs=54.3
Q ss_pred CCeEEEEEccCceEEeec-----CccceEEEeecccceeccccccCCCceEEEEEecccccceEEEEec-ccHHHHHHHH
Q psy8450 438 GDQQILALNKHGVHFLNL-----LTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNLFQQRVARIQT-DQAHEIARLI 511 (525)
Q Consensus 438 ~~~~~LaIn~~Gi~~l~~-----~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~~~~~~~~~~t-~qa~ei~~LI 511 (525)
+.++.|-|+..||.++++ .+++++...+...|+-++. .-+....-|-++.|+ .+=....|.. +.|.+|+.-|
T Consensus 53 w~~v~l~Vs~~~i~v~~~~~~~~~~~~~l~~c~vr~ISFcgv-gkd~r~FaFI~~~~~-~~f~CHVF~ce~~A~~ls~aV 130 (144)
T 2dyq_A 53 WVPTMLSVSDSLMTAHPIQAEASTEEEPLWQCPVRLVTFIGV-GRDPHTFGLIADLGR-QSFQCAAFWCQPHAGGLSEAV 130 (144)
T ss_dssp CEEEEEEECSSEEEEEECC------CCCSSEEEGGGEEEEEE-CSSTTEEEEEEECSS-SCEEEEEEECSSCTHHHHHHH
T ss_pred CcceEEEEeccceEEeccccccccccceeeeceEEEEeeeec-CCCCcEEEEEEeCCC-CcEEEEEEecCCchHHHHHHH
Confidence 457999999999999997 4789999999999865554 333333334444443 1223344443 4577799988
Q ss_pred HHHHHHHhhh
Q psy8450 512 RQYMSLDRQK 521 (525)
Q Consensus 512 ~~Yi~~~~~~ 521 (525)
..=+.+..++
T Consensus 131 ~~Ac~l~Yqk 140 (144)
T 2dyq_A 131 QAACMVQYQK 140 (144)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8777766654
No 89
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=63.38 E-value=11 Score=29.35 Aligned_cols=44 Identities=9% Similarity=0.174 Sum_probs=34.3
Q ss_pred eeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 221 KRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 221 ~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
.+.| ...+|....+.|++.+|+.++-+.|+++.|++.. ..-|+.
T Consensus 3 ~i~v-k~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~----~qrL~~ 46 (96)
T 3k9o_B 3 QIFV-KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPD----QQRLIF 46 (96)
T ss_dssp EEEE-EETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGG----GEEEEE
T ss_pred EEEE-EeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChh----HEEEEE
Confidence 3443 4457777889999999999999999999999764 455554
No 90
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=62.24 E-value=12 Score=28.73 Aligned_cols=34 Identities=21% Similarity=0.174 Sum_probs=29.5
Q ss_pred ecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCC
Q psy8450 226 RLPGGSETVINTKSTTVVEDICIEMCQLINVNND 259 (525)
Q Consensus 226 ~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~ 259 (525)
...+|....+.|++++|+.++-+.|+.+.|++..
T Consensus 6 k~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 39 (88)
T 4fbj_B 6 KTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQ 39 (88)
T ss_dssp EETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGG
T ss_pred EcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChh
Confidence 4457777889999999999999999999998764
No 91
>2yt0_A Amyloid beta A4 protein and amyloid beta A4 precursor protein-binding family B member...; chimera, Fe65L, PID domain, amyloid precursor protein; NMR {Mus musculus} PDB: 2yt1_A
Probab=61.35 E-value=35 Score=30.16 Aligned_cols=73 Identities=10% Similarity=0.032 Sum_probs=47.3
Q ss_pred CCeEEEEEccCceEEeecCc-cceEEEeecccceeccccccCCCceEEEEEecccccceEEEEe-cccHHHHHHHHH
Q psy8450 438 GDQQILALNKHGVHFLNLLT-HETISSVPYGDVISTRKVRAESGTLYLEMKCGNLFQQRVARIQ-TDQAHEIARLIR 512 (525)
Q Consensus 438 ~~~~~LaIn~~Gi~~l~~~t-k~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~~~~~~~~~~-t~qa~ei~~LI~ 512 (525)
+.++.|.|+..||.+.+.++ ++++..++...|+-++. ..+...+-|-.+.++ .+-....|. .+.|.+|+.-|.
T Consensus 99 ~~~V~L~VS~~gI~v~d~~t~~evl~~c~l~~ISFcgv-d~d~k~FaFI~~~~~-~~f~CHVF~cek~A~~ls~aI~ 173 (176)
T 2yt0_A 99 WPSVNMNVADATVTVISEKNEEEVLVECRVRFLSFMGV-GKDVHTFAFIMDTGN-QRFECHVFWCEPNAANVSEAVQ 173 (176)
T ss_dssp SCEEEEECGGGEEEEEESSCTTCEEEEEETTTCCEEEE-CSSTTEEEEEEEEET-TEEEEEEEEESSCSHHHHHHHH
T ss_pred CcceEEEEcCCEEEEEecCCCcceecccceEEeeeEcc-CCCCcEEEEEEeCCC-CCEEEEEEEccCChhHHHHHHH
Confidence 45899999999999999987 58999999999864443 323333334444441 122233333 245777887665
No 92
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=61.34 E-value=14 Score=27.17 Aligned_cols=37 Identities=11% Similarity=0.060 Sum_probs=31.1
Q ss_pred CCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 229 GGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 229 dg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
+|....+.+++.+|+.++-+.|+.+.|++.. ..-|+.
T Consensus 12 ~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~----~qrL~~ 48 (77)
T 2bwf_A 12 GQDKWEVNVAPESTVLQFKEAINKANGIPVA----NQRLIY 48 (77)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCGG----GEEEEE
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHhCCCHH----HEEEEE
Confidence 7777889999999999999999999999753 456654
No 93
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=61.22 E-value=11 Score=30.11 Aligned_cols=35 Identities=9% Similarity=0.242 Sum_probs=30.9
Q ss_pred EecCC----CcEEEEEeCCcchHHHHHHHHHHHhCCCCC
Q psy8450 225 YRLPG----GSETVINTKSTTVVEDICIEMCQLINVNND 259 (525)
Q Consensus 225 v~lpd----g~~~~v~v~s~tt~~ev~~~i~~~lgL~~~ 259 (525)
++.++ +....++|++..||.++-+.|+++.|++..
T Consensus 20 V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~ 58 (100)
T 1wju_A 20 VFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQEN 58 (100)
T ss_dssp EECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCST
T ss_pred EEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHH
Confidence 56888 778889999999999999999999999753
No 94
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=60.94 E-value=17 Score=27.51 Aligned_cols=45 Identities=7% Similarity=0.062 Sum_probs=34.7
Q ss_pred ceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 220 SKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 220 ~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
+.+. +...+|....++|++.+|+.++-+.|+++.|++.. ..-|+.
T Consensus 8 m~i~-Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~----~qrL~~ 52 (87)
T 1wh3_A 8 IQVF-VKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKK----QQQLEF 52 (87)
T ss_dssp EEEE-EEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTT----TEEEEE
T ss_pred EEEE-EEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChH----HEEEEE
Confidence 4444 34557777889999999999999999999998764 455554
No 95
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=60.66 E-value=14 Score=29.60 Aligned_cols=35 Identities=6% Similarity=0.042 Sum_probs=29.9
Q ss_pred EecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCC
Q psy8450 225 YRLPGGSETVINTKSTTVVEDICIEMCQLINVNND 259 (525)
Q Consensus 225 v~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~ 259 (525)
|.-.+|....++|++..|+.+|-+.|+++-|++..
T Consensus 33 VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~ 67 (100)
T 1uh6_A 33 CNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWN 67 (100)
T ss_dssp EECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGG
T ss_pred EECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHH
Confidence 45556777889999999999999999999999753
No 96
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=60.34 E-value=14 Score=28.36 Aligned_cols=39 Identities=3% Similarity=0.028 Sum_probs=31.8
Q ss_pred ceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCC
Q psy8450 220 SKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNND 259 (525)
Q Consensus 220 ~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~ 259 (525)
+.+. |...+|....+.|++.+|+.++-+.|+.+.|+...
T Consensus 6 m~i~-Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~ 44 (90)
T 4dwf_A 6 LEVL-VKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSE 44 (90)
T ss_dssp EEEE-EEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGG
T ss_pred EEEE-EEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHH
Confidence 3344 34567887889999999999999999999999764
No 97
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.87 E-value=14 Score=30.41 Aligned_cols=41 Identities=20% Similarity=0.294 Sum_probs=34.9
Q ss_pred CceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCC
Q psy8450 219 NSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNND 259 (525)
Q Consensus 219 ~~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~ 259 (525)
.+.+.|...|+|....+.+++.+|++|+-+.++.+.+++..
T Consensus 15 ~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e 55 (118)
T 2daf_A 15 LATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHS 55 (118)
T ss_dssp CEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTT
T ss_pred cEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChH
Confidence 34555555888988999999999999999999999999875
No 98
>1rax_A Protein (RA-domain of RAL guanosine dissociation stimulator); RAS-binding domain, ralgef, ralgds, RAS; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=59.53 E-value=36 Score=27.58 Aligned_cols=72 Identities=10% Similarity=0.176 Sum_probs=51.9
Q ss_pred CcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEc-CCceeecCCCcchhhhhhHHHhhcCCcEEEEEeeec
Q psy8450 230 GSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVE-GDAFTMPLAKEEYILDVTTELHKNQQVFYLIFCRSV 308 (525)
Q Consensus 230 g~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~-~~~~~~~L~~~~~i~Dvl~~~e~~~~~~~l~frr~~ 308 (525)
..++.+.+.+...+..|++....+.+|...+ .+.|.|+...+ |+++..| ++-.++=.+.. ...+.|.+|+|-
T Consensus 41 n~YKSIlltsqDktp~VI~raL~Khnl~~~~-~~~y~L~Q~Lp~~kEL~iP--d~aNVFYAm~~----s~~~dFvLR~r~ 113 (115)
T 1rax_A 41 NMYKSILVTSQDKAPAVIRKAMDKHNLEEEE-PEDYELLQILSDDRKLKIP--ENANVFYAMNS----TANYDFVLKKRT 113 (115)
T ss_dssp CCCEEEEEETTCCHHHHHHHHHHHHTCTTSC-STTEEEEEECSSSCEEEEC--TTSCHHHHSCT----TSCCEEEEEECC
T ss_pred cEEEEEEEecCCCcHHHHHHHHHHcCCCCCC-ccceEEEEEcCCCCeEecC--CCcceEEEEcC----CCCccEEEeecC
Confidence 3578899999999999999999999999753 37999999885 5544443 44444333331 256778888764
No 99
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=59.36 E-value=13 Score=28.30 Aligned_cols=39 Identities=3% Similarity=0.028 Sum_probs=32.1
Q ss_pred ceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCC
Q psy8450 220 SKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNND 259 (525)
Q Consensus 220 ~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~ 259 (525)
+.+. +...+|....+.+++.+|+.++-+.|+.+.|++..
T Consensus 18 m~i~-Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~ 56 (88)
T 4eew_A 18 LEVL-VKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSE 56 (88)
T ss_dssp EEEE-EEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGG
T ss_pred EEEE-EEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHH
Confidence 4444 34567777889999999999999999999999764
No 100
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=58.81 E-value=9.2 Score=29.33 Aligned_cols=35 Identities=11% Similarity=0.301 Sum_probs=29.0
Q ss_pred eeEEecCCCcEEEEE-eCCcchHHHHHHHHHHHhCCCC
Q psy8450 222 RQLYRLPGGSETVIN-TKSTTVVEDICIEMCQLINVNN 258 (525)
Q Consensus 222 ~~iv~lpdg~~~~v~-v~s~tt~~ev~~~i~~~lgL~~ 258 (525)
++ +..++|.. .+. +++.+|+.|+.+.|+++.|+..
T Consensus 3 i~-vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~ 38 (86)
T 2kzr_A 3 VR-CKAKGGTH-LLQGLSSRTRLRELQGQIAAITGIAP 38 (86)
T ss_dssp EE-EEETTEEE-EECSCCTTCBHHHHHHHHHHHTCCCT
T ss_pred EE-EEcCCCCE-EeeecCCCCCHHHHHHHHHHHhCCCc
Confidence 44 45778875 477 9999999999999999999874
No 101
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=58.62 E-value=19 Score=27.50 Aligned_cols=45 Identities=9% Similarity=-0.027 Sum_probs=34.4
Q ss_pred ceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 220 SKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 220 ~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
+.+.+- ..+|....++|+++.|+.++-+.|..+.|++.. ..-|+.
T Consensus 11 ~~i~vk-~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~----~QrLi~ 55 (84)
T 2kk8_A 11 MKFLVE-NLNGSSFELEVDYRDTLLVVKQKIERSQHIPVS----KQTLIV 55 (84)
T ss_dssp EEEEEE-ETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGG----GEEEEE
T ss_pred eEEEEE-ecCCcEEEEEECCCChHHHHHHHHHHHHCcChH----HEEEEE
Confidence 445543 446677789999999999999999999998753 455654
No 102
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=56.27 E-value=24 Score=28.39 Aligned_cols=50 Identities=14% Similarity=0.135 Sum_probs=37.2
Q ss_pred HHHHHHHHcCCCceeeEEecC---CCcEEEEEeCC-cchHHHHHHHHHHHhCCCCC
Q psy8450 208 VEEVTAVSAGRNSKRQLYRLP---GGSETVINTKS-TTVVEDICIEMCQLINVNND 259 (525)
Q Consensus 208 ~~Ei~a~~~~~~~~~~iv~lp---dg~~~~v~v~s-~tt~~ev~~~i~~~lgL~~~ 259 (525)
..|+.+. ...++.+. |..+ +|....+.|++ .+|+.++-+.|....|++..
T Consensus 17 e~~~l~~-~~~~i~i~-Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~ 70 (111)
T 1we6_A 17 EDQFLAQ-HPGPATIR-VSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPAN 70 (111)
T ss_dssp HHHHHHH-CCSCEEEE-ECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHh-CCCcEEEE-EEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHH
Confidence 4444433 33455555 4566 77778899998 99999999999999999864
No 103
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=55.57 E-value=22 Score=26.16 Aligned_cols=45 Identities=20% Similarity=0.247 Sum_probs=33.1
Q ss_pred ceeeEEecCCCcE-EEEE-eCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 220 SKRQLYRLPGGSE-TVIN-TKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 220 ~~~~iv~lpdg~~-~~v~-v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
+.+.| ...+|.. ..++ +++.+|+.++-+.|+.+.|++.. ..-|+.
T Consensus 3 m~i~V-k~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~----~qrL~~ 49 (78)
T 2faz_A 3 MWIQV-RTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPG----LQRLFY 49 (78)
T ss_dssp EEEEE-EETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGG----GEEEEE
T ss_pred EEEEE-EECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChh----hEEEEE
Confidence 33443 3446655 4788 99999999999999999999754 455554
No 104
>1rlf_A RLF, RLF-RBD; signal transduction protein; NMR {Mus musculus} SCOP: d.15.1.5
Probab=54.80 E-value=25 Score=27.29 Aligned_cols=73 Identities=12% Similarity=0.187 Sum_probs=51.4
Q ss_pred CCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhhhhHHHhhcCCcEEEEEeee
Q psy8450 228 PGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHKNQQVFYLIFCRS 307 (525)
Q Consensus 228 pdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl~~~e~~~~~~~l~frr~ 307 (525)
.|..++.+.+.+...+..|++....+.+|...+ .+.|.|+...+++. +..+.++-.++=.++ ...+-|++|+|
T Consensus 17 ~Gn~YKSIlltsqDktp~vI~~al~Khnl~~~~-~~~y~L~Q~Lp~~k-EL~iPd~aNvFYAm~-----sa~~~F~LR~r 89 (90)
T 1rlf_A 17 DGSVYKSILVTSQDKAPSVISRVLKKNNRDSAV-ASEFELVQLLPGDR-ELTIPHSANVFYAMD-----GASHDFLLRQR 89 (90)
T ss_dssp SCCSCCEEEEETTCCCTTHHHHHHHHTTTTSCC-CCCEEEEETTTTCE-ECCTTSCSTTHHHHC-----SSCEEEEEEEC
T ss_pred CCceEEEEEEecCCCcHHHHHHHHHHcCCCCCC-hhheEEEEEcCCCC-EEecCCCccEEEEec-----ccchhheEeec
Confidence 345678899999999999999999999999854 38999998876432 333444444443443 24567777765
No 105
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=54.72 E-value=19 Score=29.08 Aligned_cols=45 Identities=9% Similarity=0.138 Sum_probs=35.2
Q ss_pred ceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 220 SKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 220 ~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
+.+. +...+|....+.|++.+|+.++-..|+.+.|++.. ..-|+.
T Consensus 36 m~I~-Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~----~QrLi~ 80 (111)
T 3vdz_A 36 MQIF-VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPD----QQRLIF 80 (111)
T ss_dssp EEEE-EECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGG----GEEEEE
T ss_pred EEEE-EEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChH----HEEEEE
Confidence 4444 34568888899999999999999999999999864 345554
No 106
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=54.20 E-value=20 Score=28.67 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=33.1
Q ss_pred CCceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCC
Q psy8450 218 RNSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNND 259 (525)
Q Consensus 218 ~~~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~ 259 (525)
..+.+.| ...+|....+.|++.+|+.++-+.|+.+.|+...
T Consensus 22 ~~m~I~V-k~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 62 (106)
T 1ttn_A 22 YECQLRL-RLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPG 62 (106)
T ss_dssp CSEEEEE-EETTTEEEEEEECTTSHHHHHHHHHHHTTCCCST
T ss_pred CeEEEEE-EcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcc
Confidence 4455554 4557777889999999999999999999999754
No 107
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=53.60 E-value=26 Score=26.57 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=33.7
Q ss_pred ceeeEEecCCC-cEEEE-EeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 220 SKRQLYRLPGG-SETVI-NTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 220 ~~~~iv~lpdg-~~~~v-~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
+.+. +...+| ....+ .|++.+|+.++-+.|+.+.|++.. ..-|+.
T Consensus 8 m~i~-Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~----~qrL~~ 54 (89)
T 1wy8_A 8 MWIQ-VRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPE----CQRLFY 54 (89)
T ss_dssp EEEE-EEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTT----TEEEEE
T ss_pred EEEE-EEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChh----hEEEEE
Confidence 4444 345566 57789 499999999999999999999764 455554
No 108
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=53.55 E-value=21 Score=28.20 Aligned_cols=46 Identities=13% Similarity=0.216 Sum_probs=34.0
Q ss_pred CCceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 218 RNSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 218 ~~~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
..+.+.| ... |....+.|++.+|+.++-+.|+.+.|++.. .--|+.
T Consensus 24 ~~m~I~V-k~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~----~qrLi~ 69 (101)
T 2klc_A 24 KIMKVTV-KTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTD----QLVLIF 69 (101)
T ss_dssp CCEEEEE-ECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGG----GEEEEE
T ss_pred CeEEEEE-EeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChh----hEEEEE
Confidence 3455554 344 555788999999999999999999999853 455544
No 109
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=52.83 E-value=22 Score=28.64 Aligned_cols=45 Identities=9% Similarity=0.138 Sum_probs=35.0
Q ss_pred ceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 220 SKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 220 ~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
+.+. +...+|....+.|++.+|+.++-+.|+++.|++.. ..-|+.
T Consensus 36 m~I~-Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~----~qrLi~ 80 (111)
T 2ojr_A 36 MQIF-VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPD----QQRLIF 80 (111)
T ss_dssp EEEE-EECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTT----TEEEEE
T ss_pred EEEE-EEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcc----cEEEEE
Confidence 4444 45567777889999999999999999999999864 355544
No 110
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=52.48 E-value=23 Score=27.00 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=31.5
Q ss_pred ceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCC
Q psy8450 220 SKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNND 259 (525)
Q Consensus 220 ~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~ 259 (525)
+.+. +...+|....+.|++.+|+.++-+.|+.+.|++..
T Consensus 5 m~I~-Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~ 43 (88)
T 2hj8_A 5 LSIL-VRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDD 43 (88)
T ss_dssp EEEE-EEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTT
T ss_pred EEEE-EECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChh
Confidence 4444 34456777789999999999999999999999864
No 111
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=52.43 E-value=40 Score=27.11 Aligned_cols=44 Identities=25% Similarity=0.266 Sum_probs=35.4
Q ss_pred eEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEE
Q psy8450 223 QLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCI 270 (525)
Q Consensus 223 ~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~ 270 (525)
..+.||||+...-.+....|+++|.+-|....+... ..|.|.-.
T Consensus 16 IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~----~~f~L~t~ 59 (109)
T 2dzk_A 16 IQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTY----GNFSLATM 59 (109)
T ss_dssp EEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSS----CSCEEECS
T ss_pred EEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCC----CceEEEcC
Confidence 336899999888889999999999999998876543 46888753
No 112
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.53 E-value=26 Score=27.87 Aligned_cols=38 Identities=8% Similarity=-0.033 Sum_probs=30.5
Q ss_pred eeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCC
Q psy8450 222 RQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDL 260 (525)
Q Consensus 222 ~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~ 260 (525)
..++.+ +|....+.|++.+|+.++-+.|.++-|++...
T Consensus 11 ~~~vk~-~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~ 48 (100)
T 2dzm_A 11 DFRVEY-RDRNVDVVLEDTCTVGEIKQILENELQIPVSK 48 (100)
T ss_dssp EEEEEC-SSCEEEEEEETTSBHHHHHHHHHHHHCCCTTT
T ss_pred EEEEEe-CCeEEEEEECCCCcHHHHHHHHHHHHCCChhH
Confidence 334556 45556899999999999999999999998753
No 113
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=50.74 E-value=27 Score=27.55 Aligned_cols=40 Identities=5% Similarity=-0.028 Sum_probs=30.6
Q ss_pred ceeeEEecCCC---cEEEEEeCCcchHHHHHHHHHHHhCCCCC
Q psy8450 220 SKRQLYRLPGG---SETVINTKSTTVVEDICIEMCQLINVNND 259 (525)
Q Consensus 220 ~~~~iv~lpdg---~~~~v~v~s~tt~~ev~~~i~~~lgL~~~ 259 (525)
+.+.|.+..++ ....++|++.+|+.|+-+.|..+.|+...
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~ 50 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAE 50 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGG
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChH
Confidence 44554444333 56779999999999999999999999764
No 114
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=49.87 E-value=22 Score=27.10 Aligned_cols=32 Identities=19% Similarity=0.268 Sum_probs=28.2
Q ss_pred CCCcEEEEEeCCcchHHHHHHHHHHHhCCCCC
Q psy8450 228 PGGSETVINTKSTTVVEDICIEMCQLINVNND 259 (525)
Q Consensus 228 pdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~ 259 (525)
.+|....+.+++.+|+.++-+.|+.+.|++..
T Consensus 19 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 50 (85)
T 2kd0_A 19 FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPR 50 (85)
T ss_dssp ETTEEEEEEECTTSBHHHHHHHHHHHHCCCTT
T ss_pred ECCEEEEEEECCCCcHHHHHHHHHHHHCcChH
Confidence 37777789999999999999999999999854
No 115
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=49.18 E-value=35 Score=27.56 Aligned_cols=56 Identities=16% Similarity=0.157 Sum_probs=40.1
Q ss_pred HHHHHHHHcCCCceeeEEecCC----------CcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 208 VEEVTAVSAGRNSKRQLYRLPG----------GSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 208 ~~Ei~a~~~~~~~~~~iv~lpd----------g~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
..|+.|.. ..++.+.| ..|+ |....+.|++++|+.++-+.|..+.|++.. .--|+.
T Consensus 15 e~~~l~~~-~~~i~l~V-~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~----~QrL~~ 80 (115)
T 1we7_A 15 EEEFLRRN-KGPVSIKV-QVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAG----KQKLQY 80 (115)
T ss_dssp HHHHHHHC-CSCEEEEE-EECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTT----TEEEEE
T ss_pred HHHHHHhC-CCCEEEEE-EcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChH----HEEEEE
Confidence 44444443 34666664 5664 566789999999999999999999998764 355554
No 116
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=48.73 E-value=60 Score=25.18 Aligned_cols=49 Identities=16% Similarity=0.313 Sum_probs=39.3
Q ss_pred CceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEc
Q psy8450 219 NSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVE 272 (525)
Q Consensus 219 ~~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~ 272 (525)
.+++. +++-|+ ...+.+++..+-.++++.+.+.+++... +.|.+...++
T Consensus 6 ~vkvK-~~~~gd-i~~~~v~~~i~~~~L~~kv~~~~~~~~~---~~f~lky~DE 54 (89)
T 1vd2_A 6 QVRVK-AYYRGD-IMITHFEPSISFEGLCNEVRDMCSFDNE---QLFTMKWIDE 54 (89)
T ss_dssp CEEEE-EESSSC-EEEEEECTTCCHHHHHHHHHHHTTCCSS---CCEEEEECCS
T ss_pred eEEEE-EEeCCe-EEEEECCCCCCHHHHHHHHHHHhCCCCC---CeEEEEEECC
Confidence 34555 356444 5789999999999999999999999865 6799998875
No 117
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=48.19 E-value=24 Score=30.76 Aligned_cols=41 Identities=7% Similarity=0.172 Sum_probs=33.6
Q ss_pred CCceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCC
Q psy8450 218 RNSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNND 259 (525)
Q Consensus 218 ~~~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~ 259 (525)
..+.+.| ...+|....+.|++++|+.++-+.|+.+.|++..
T Consensus 19 ~~m~i~V-k~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~ 59 (172)
T 3u30_A 19 SHMQIFV-KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPD 59 (172)
T ss_dssp CCEEEEE-EETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGG
T ss_pred CcEEEEE-EeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChH
Confidence 4455554 4458887899999999999999999999999764
No 118
>3ulb_A Target of rapamycin complex 2 subunit AVO1; PH domain, membrane localization, membrane protein; 1.90A {Saccharomyces cerevisiae} PDB: 3ulc_A
Probab=47.95 E-value=1.1e+02 Score=25.12 Aligned_cols=70 Identities=9% Similarity=0.066 Sum_probs=45.5
Q ss_pred eEEEEEccCceEEeecCccc------eEEEeecccceeccccccCCCceEEEEEe--cccccceEEEEecccHHHHHHHH
Q psy8450 440 QQILALNKHGVHFLNLLTHE------TISSVPYGDVISTRKVRAESGTLYLEMKC--GNLFQQRVARIQTDQAHEIARLI 511 (525)
Q Consensus 440 ~~~LaIn~~Gi~~l~~~tk~------~l~~~~~~~I~s~~~~~~~~~~~~~~i~~--g~~~~~~~~~~~t~qa~ei~~LI 511 (525)
+-.|+|.-+=||++-++++. -..++.+++|......+- ....|.|.+ |+..+.+.+-||...+.|-+.++
T Consensus 29 ER~L~IDGdYIHImP~~~~~~~~~~~KTtS~H~s~Vv~~K~s~k--~P~~FKivV~k~~~~e~KrYdfEA~s~~ea~EIV 106 (121)
T 3ulb_A 29 ERTLAIDGDYIYIVPPEGRIHWHDNVKTKSLHISQVVLVKKSKR--VPEHFKIFVRREGQDDIKRYYFEAVSGQECTEIV 106 (121)
T ss_dssp EEEEEEETTEEEEECCC-------CCCCEEEEGGGEEEEEECSS--CTTEEEEEECCTTCSSCEEEEEEESSHHHHHHHH
T ss_pred cEEEEEcCceEEEecCCCCcccccCCcEEEEEEeeEEEEEeccc--CCCcEEEEEEccCCCCcceeEEEeCCHHHHHHHH
Confidence 78999999999999776543 346788999987654322 224566554 33445689999987555444433
No 119
>1ef5_A RGL; RAS-binding domain, RAS, RBD, RA, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: d.15.1.5
Probab=46.47 E-value=28 Score=27.72 Aligned_cols=72 Identities=17% Similarity=0.245 Sum_probs=50.9
Q ss_pred CCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEc-CCceeecCCCcchhhhhhHHHhhcCCcEEEEEeee
Q psy8450 229 GGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVE-GDAFTMPLAKEEYILDVTTELHKNQQVFYLIFCRS 307 (525)
Q Consensus 229 dg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~-~~~~~~~L~~~~~i~Dvl~~~e~~~~~~~l~frr~ 307 (525)
|..++.+.+.+...+..|++....+.+|...+ .+.|.|....+ |+++..| ++-.++=.+. ....+.|.+|+|
T Consensus 30 g~~YKSIlltsqDrtp~VI~raL~Khnl~~~~-~~~y~L~Q~Lp~~kEL~iP--d~aNVFYAm~----~~~~~~F~LR~k 102 (103)
T 1ef5_A 30 GNMYKSIMLTSQDKTPAVIQRAMSKHNLESDP-AEEYELVQVISEDKELVIP--DSANVFYAMN----SQVNFDFILRKK 102 (103)
T ss_dssp SCCCCCBCCSSCCCTHHHHHHHTTTTTCCCCS-SSSEEEEEECSSSCCEESS--CCCCTTTTTC----CCSCEEEEEEEC
T ss_pred CcEEEEEEEecCCCcHHHHHHHHHHcCCCCCC-hhheEEEEEcCCCCEEecC--CCcceEEEEc----CCCCccEEEeeC
Confidence 44577888999999999999999999999874 37999999886 4444433 4434433332 124677777765
No 120
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=46.18 E-value=31 Score=27.53 Aligned_cols=38 Identities=11% Similarity=0.150 Sum_probs=30.9
Q ss_pred ceeeEEecCCCcEEEEEeC-CcchHHHHHHHHHHHhCCCCC
Q psy8450 220 SKRQLYRLPGGSETVINTK-STTVVEDICIEMCQLINVNND 259 (525)
Q Consensus 220 ~~~~iv~lpdg~~~~v~v~-s~tt~~ev~~~i~~~lgL~~~ 259 (525)
|.++| .-++|.. .++|+ +..|+.|+.+.|..+.|++..
T Consensus 8 M~irv-rs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~ 46 (107)
T 1wf9_A 8 TMLRV-RSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIH 46 (107)
T ss_dssp EEEEE-ECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTT
T ss_pred EEEEE-ECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcc
Confidence 45554 4568876 68999 999999999999999998754
No 121
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=45.87 E-value=28 Score=28.24 Aligned_cols=40 Identities=10% Similarity=0.203 Sum_probs=32.4
Q ss_pred ecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 226 RLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 226 ~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
...+|....++|++++|+.++-+.|+.+.|++.. .--|+.
T Consensus 15 k~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~----~qrLi~ 54 (114)
T 2kdi_A 15 KTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPD----QQRLIW 54 (114)
T ss_dssp EETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGG----GEEEEE
T ss_pred EeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChH----HEEEEE
Confidence 3457777889999999999999999999999864 455544
No 122
>3kh0_A Ralgds, ralgef, RAL guanine nucleotide dissociation stimulator; structural genomics consortium, SGC, RAS-association domain, alternative splicing; 2.10A {Homo sapiens} PDB: 2rgf_A 1lxd_A
Probab=45.72 E-value=78 Score=26.50 Aligned_cols=72 Identities=10% Similarity=0.169 Sum_probs=52.1
Q ss_pred cEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhhhhHHHhhcCCcEEEEEeeec
Q psy8450 231 SETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHKNQQVFYLIFCRSV 308 (525)
Q Consensus 231 ~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl~~~e~~~~~~~l~frr~~ 308 (525)
.++.+.+.+...+..|++...++-++...+ .+.|.|+...+++. +..+.++-.++=.++ ...++-|.+|++-
T Consensus 39 lYKSIllTsqDrtp~VI~rAL~Khnl~~~~-~~~y~LvQ~Lp~~k-EL~IPd~ANVFYAM~----~sa~~dFvLR~k~ 110 (140)
T 3kh0_A 39 MYKSILVTSQDKAPAVIRKAMDKHNLEEEE-PEDYELLQILSDDR-KLKIPENANVFYAMN----STANYDFVLKKRT 110 (140)
T ss_dssp EEEEEEEETTCBHHHHHHHHHHHTTCTTSC-GGGEEEEEEEETTE-EEECCTTCBHHHHSC----TTSCCEEEEEECC
T ss_pred EEEEEEeecccccHHHHHHHHHHhCCCCCc-hhceEEEEEcCCCC-eEecCCCCceEEEec----CCCCccEEEeecC
Confidence 577899999999999999999999998874 37899999886432 223434444444443 1357778888764
No 123
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=45.39 E-value=32 Score=25.25 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=30.1
Q ss_pred ecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCC
Q psy8450 226 RLPGGSETVINTKSTTVVEDICIEMCQLINVNND 259 (525)
Q Consensus 226 ~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~ 259 (525)
.-.+|....+.|.+.|+.+.+.+..|++.|+...
T Consensus 7 ~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~ 40 (72)
T 1wm3_A 7 AGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMR 40 (72)
T ss_dssp ECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTT
T ss_pred ECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcc
Confidence 3468888899999999999999999999999764
No 124
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=45.02 E-value=24 Score=28.18 Aligned_cols=35 Identities=6% Similarity=0.164 Sum_probs=29.7
Q ss_pred EecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCC
Q psy8450 225 YRLPGGSETVINTKSTTVVEDICIEMCQLINVNND 259 (525)
Q Consensus 225 v~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~ 259 (525)
|...+|....+.|++.+|+.++-+.|+.+.|+...
T Consensus 6 Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 40 (106)
T 3m62_B 6 FKNFKKEKVPLDLEPSNTILETKTKLAQSISCEES 40 (106)
T ss_dssp EECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGG
T ss_pred EEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChh
Confidence 34557777889999999999999999999998754
No 125
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=44.42 E-value=1.1e+02 Score=24.66 Aligned_cols=64 Identities=9% Similarity=0.124 Sum_probs=42.8
Q ss_pred eEEecCCCcEEEEEeCCcchHHHHHHHHHHHh-------CCCCCCCCcceEEEEEEcCCceeecCCCcchhhhh
Q psy8450 223 QLYRLPGGSETVINTKSTTVVEDICIEMCQLI-------NVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDV 289 (525)
Q Consensus 223 ~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~l-------gL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dv 289 (525)
..+.+|+|....+.+...+|..|+.+++-++. -|.++ ..|...-...+...+-.-+++..++|+
T Consensus 22 v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~---~~Y~F~~in~~~e~Eel~DEsrrL~dv 92 (108)
T 2v1y_A 22 VECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDE---SSYIFVSVTQEAEREEFFDETRRLCDL 92 (108)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCG---GGCEEEEEBTTSCEEEECCTTSBGGGS
T ss_pred EEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCc---cceEEEEecCCceEEEeEcCceEEEec
Confidence 34679999999999999999999988777652 34554 566666554323333333455566665
No 126
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=44.30 E-value=27 Score=27.04 Aligned_cols=38 Identities=11% Similarity=0.160 Sum_probs=30.2
Q ss_pred ceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCC
Q psy8450 220 SKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNND 259 (525)
Q Consensus 220 ~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~ 259 (525)
+.+.| ... |....+.|++.+|+.++-+.|+.+.|+...
T Consensus 18 m~i~V-k~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~ 55 (96)
T 1wx8_A 18 IRVSV-KTP-QDCHEFFLAENSNVRRFKKQISKYLHCNAD 55 (96)
T ss_dssp EEEEE-ECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTT
T ss_pred EEEEE-EEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHH
Confidence 44444 334 666789999999999999999999999864
No 127
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=42.38 E-value=32 Score=28.89 Aligned_cols=35 Identities=9% Similarity=0.210 Sum_probs=29.9
Q ss_pred EecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCC
Q psy8450 225 YRLPGGSETVINTKSTTVVEDICIEMCQLINVNND 259 (525)
Q Consensus 225 v~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~ 259 (525)
+..++|....+.+++.+|+.|+.+.|+++.|++..
T Consensus 5 vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~ 39 (152)
T 3b08_A 5 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPD 39 (152)
T ss_dssp EEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGG
T ss_pred EEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChH
Confidence 34457777889999999999999999999999754
No 128
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=41.79 E-value=31 Score=26.85 Aligned_cols=46 Identities=11% Similarity=0.146 Sum_probs=35.7
Q ss_pred CceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 219 NSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 219 ~~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
.+.+.| .-.+|....+.|.++|+.+.+.+..|++.|+... .+.+..
T Consensus 5 ~i~ikV-k~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~----~~rf~F 50 (91)
T 2io0_B 5 HINLKV-AGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMR----QIRFRF 50 (91)
T ss_dssp EEEEEE-ECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCST----TEEEEE
T ss_pred eEEEEE-ECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcc----cEEEEE
Confidence 344443 4468888899999999999999999999999764 355544
No 129
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=41.48 E-value=54 Score=24.51 Aligned_cols=40 Identities=3% Similarity=0.002 Sum_probs=32.2
Q ss_pred CceeeEEecCCCc-EEEEEeCCcchHHHHHHHHHHHhCCCCC
Q psy8450 219 NSKRQLYRLPGGS-ETVINTKSTTVVEDICIEMCQLINVNND 259 (525)
Q Consensus 219 ~~~~~iv~lpdg~-~~~v~v~s~tt~~ev~~~i~~~lgL~~~ 259 (525)
.+.+.| .-.+|. ...+.|.+.|+.+.+.+..|++.|+...
T Consensus 7 ~i~ikV-~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~ 47 (79)
T 3a4r_A 7 ELRLRV-QGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGH 47 (79)
T ss_dssp CEEEEE-ECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTC
T ss_pred EEEEEE-EeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcc
Confidence 344443 455774 7889999999999999999999999864
No 130
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=40.96 E-value=44 Score=24.88 Aligned_cols=45 Identities=7% Similarity=-0.113 Sum_probs=32.6
Q ss_pred ceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHH---hCCCCCCCCcceEEEE
Q psy8450 220 SKRQLYRLPGGSETVINTKSTTVVEDICIEMCQL---INVNNDLEMEEFSLYC 269 (525)
Q Consensus 220 ~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~---lgL~~~~~~~~FsL~~ 269 (525)
+.+. +...+|....+.|++.+|+.++-+.|+.+ -|+.. +..-|+.
T Consensus 6 m~i~-vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~----~~qrLi~ 53 (85)
T 2wyq_A 6 VTIT-LKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPV----AGQKLIY 53 (85)
T ss_dssp EEEE-EEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCG----GGEEEEE
T ss_pred EEEE-EEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCH----HHeEEEE
Confidence 3344 34457777789999999999999999998 46654 3455544
No 131
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=40.86 E-value=88 Score=28.44 Aligned_cols=67 Identities=12% Similarity=0.129 Sum_probs=42.2
Q ss_pred CceeeEEecCCC-cEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhh
Q psy8450 219 NSKRQLYRLPGG-SETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILD 288 (525)
Q Consensus 219 ~~~~~iv~lpdg-~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~D 288 (525)
+....++...+. ....+.+....|++++.+.+|+.+++... ..+-||....+.........+..+-|
T Consensus 127 P~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~---~~~RlW~~~~~~~~~~L~~~~~tl~~ 194 (217)
T 4a3p_A 127 LTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDE---KETRLWNKYMSNTFEPLNKPDSTIQD 194 (217)
T ss_dssp CEEEEEEETTEEEEEEEEEECTTSBHHHHHHHHHHHTTCCTT---SCEEEEEEEETTEEEECCCTTSBHHH
T ss_pred ccEEEEEecCCCCcceEEEEcccchHHHHHHHHHHHhCCCCC---CceEEEEecCCCCeeecCCCCCCHHH
Confidence 444454444433 23456778899999999999999999864 35888876544434433222334444
No 132
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=40.60 E-value=32 Score=26.87 Aligned_cols=39 Identities=13% Similarity=0.146 Sum_probs=32.1
Q ss_pred ceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCC
Q psy8450 220 SKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNND 259 (525)
Q Consensus 220 ~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~ 259 (525)
+.+.| .-.+|....+.|.+.|+.+.|.+..|++.|+...
T Consensus 8 i~ikV-k~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~ 46 (94)
T 2io1_B 8 INLKV-AGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMR 46 (94)
T ss_dssp EEEEE-ECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGG
T ss_pred EEEEE-ECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcc
Confidence 44443 3457888899999999999999999999999764
No 133
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=40.56 E-value=48 Score=25.67 Aligned_cols=44 Identities=14% Similarity=0.210 Sum_probs=33.0
Q ss_pred ceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 220 SKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 220 ~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
+.+. +.-++| ...++|++.+|+.++-+.|..+.|++.. .--|+.
T Consensus 16 ~~I~-Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~----~QrLi~ 59 (94)
T 2kan_A 16 IHVT-VKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIK----RMQLYY 59 (94)
T ss_dssp EEEE-EECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTT----TEEEEE
T ss_pred EEEE-EEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHH----HEEEEE
Confidence 3344 345566 5788999999999999999999999754 455543
No 134
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=40.04 E-value=38 Score=26.16 Aligned_cols=36 Identities=8% Similarity=0.109 Sum_probs=29.7
Q ss_pred CcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 230 GSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 230 g~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
|....+.|++.+|+.++-+.|+++.|++.. ..-|+.
T Consensus 27 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~----~qrLi~ 62 (93)
T 2l7r_A 27 QELHTFEVTGQETVAQIKAHVASLEGIAPE----DQVVLL 62 (93)
T ss_dssp SSEEEEECCSSCBHHHHHHHHHHHHTCCGG----GCEEEE
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCcChh----HEEEEE
Confidence 566789999999999999999999998754 445554
No 135
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=39.23 E-value=32 Score=27.07 Aligned_cols=48 Identities=6% Similarity=-0.010 Sum_probs=39.8
Q ss_pred HHHHHHcCCCceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCC
Q psy8450 210 EVTAVSAGRNSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNND 259 (525)
Q Consensus 210 Ei~a~~~~~~~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~ 259 (525)
|+..|++++ .+.|+.+.-++...+.+++..|+..+.+.|.++-|+...
T Consensus 5 e~~dIL~rk--vvHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~ 52 (94)
T 4efo_A 5 STSDILHRM--VIHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISS 52 (94)
T ss_dssp GGGCGGGEE--EEEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGG
T ss_pred HHHHHHhce--eEEEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHH
Confidence 556666533 345678999999999999999999999999999999875
No 136
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=38.61 E-value=90 Score=23.46 Aligned_cols=46 Identities=11% Similarity=0.053 Sum_probs=34.0
Q ss_pred CceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 219 NSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 219 ~~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
+....-+.||||+...-.+.++.|+++|.+-|.. .|.. . ..|.|..
T Consensus 6 ~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~-~---~~f~L~t 51 (84)
T 3qx1_A 6 PVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFP-W---DEYKLLS 51 (84)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCC-T---TTEEEEC
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCC-C---CCeEEEe
Confidence 3444447899999777788899999999988877 4542 2 5788873
No 137
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=38.51 E-value=46 Score=27.45 Aligned_cols=45 Identities=9% Similarity=0.067 Sum_probs=33.5
Q ss_pred CceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 219 NSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 219 ~~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
.+.+.|-.. |....+.|++.+|+.++-+.|+.+.|+... ..-|+.
T Consensus 32 ~m~I~Vk~~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~----~QrLi~ 76 (125)
T 1j8c_A 32 IIKVTVKTP--KEKEEFAVPENSSVQQFKEAISKRFKSQTD----QLVLIF 76 (125)
T ss_dssp CEEEEEECS--SCEEEEEECTTCCHHHHHHHHHHHHCSCSS----SEEEEE
T ss_pred cEEEEEEeC--CeEEEEEECCCCcHHHHHHHHHHHHCcCcc----eEEEEE
Confidence 355554334 556789999999999999999999999764 345544
No 138
>3hqc_A Tensin-like C1 domain-containing phosphatase; TENC1, phosphotyrosine binding domain, PTB, TNS2, KIAA1075, struct genomics, PSI-2; 1.80A {Homo sapiens} SCOP: b.55.1.2 PDB: 2loz_A 2dkq_A
Probab=38.13 E-value=1.6e+02 Score=25.34 Aligned_cols=75 Identities=13% Similarity=0.179 Sum_probs=46.0
Q ss_pred eEEEEEccCceEEeecCccceE-EEeecccceeccccccCCC---------ceEEEE---EecccccceEEEEe---ccc
Q psy8450 440 QQILALNKHGVHFLNLLTHETI-SSVPYGDVISTRKVRAESG---------TLYLEM---KCGNLFQQRVARIQ---TDQ 503 (525)
Q Consensus 440 ~~~LaIn~~Gi~~l~~~tk~~l-~~~~~~~I~s~~~~~~~~~---------~~~~~i---~~g~~~~~~~~~~~---t~q 503 (525)
.+-+-|+.+||.+.|...+..+ ..||...|+-.+..+ ++. .-.|-+ +.|+..+.....|. ..|
T Consensus 53 ~V~fkVS~qGItLtD~~rK~FfrrHypl~~IsFC~~DP-~~r~w~~~~~~~~riFGFVARk~~s~~~n~CHlFae~dp~Q 131 (157)
T 3hqc_A 53 VVHFKVSAQGITLTDNQRKLFFRRHYPVNSITFSSTDP-QDRRWTNPDGTTSKIFGFVAKKPGSPWENVCHLFAELDPDQ 131 (157)
T ss_dssp EEEEEEETTEEEEEEEETTEEEEEEEEGGGEEEEEECT-TCCEEECTTSCEEEEEEEEEEETTEEEEEEEEEEECCBTTB
T ss_pred EEEEEEeCCCceEEecccceeehhcCcccceEeecCCh-hhccccccCCCcccEEEEEEccCCCCCCeeEEEeeccCCCC
Confidence 6889999999999998876554 448999986544432 221 112222 22332233566673 333
Q ss_pred -HHHHHHHHHHHH
Q psy8450 504 -AHEIARLIRQYM 515 (525)
Q Consensus 504 -a~ei~~LI~~Yi 515 (525)
|..|.+.|+..+
T Consensus 132 PAsaIvnfv~kv~ 144 (157)
T 3hqc_A 132 PAGAIVTFITKVM 144 (157)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 888887776554
No 139
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=37.49 E-value=51 Score=25.45 Aligned_cols=40 Identities=8% Similarity=-0.069 Sum_probs=30.7
Q ss_pred ecCCCcEEEEEeCCcchHHHHHHHHHHH---hCCCCCCCCcceEEEE
Q psy8450 226 RLPGGSETVINTKSTTVVEDICIEMCQL---INVNNDLEMEEFSLYC 269 (525)
Q Consensus 226 ~lpdg~~~~v~v~s~tt~~ev~~~i~~~---lgL~~~~~~~~FsL~~ 269 (525)
...+|....++|++.+|+.++-+.|+.+ -|++.. ..-|+.
T Consensus 6 k~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~----~qrLi~ 48 (95)
T 1uel_A 6 KTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVA----GQKLIY 48 (95)
T ss_dssp EETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTT----TEEEEE
T ss_pred EeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChh----hEEEEE
Confidence 4457777889999999999999999999 466643 455554
No 140
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=36.23 E-value=65 Score=25.68 Aligned_cols=40 Identities=13% Similarity=0.152 Sum_probs=32.8
Q ss_pred CceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCC
Q psy8450 219 NSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNND 259 (525)
Q Consensus 219 ~~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~ 259 (525)
.+.+.| .-.+|....+.|.+.|+.+.|.+..|++.|+...
T Consensus 24 ~I~IkV-k~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~ 63 (104)
T 1wz0_A 24 HINLKV-AGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMR 63 (104)
T ss_dssp CEEEEE-ECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTT
T ss_pred eEEEEE-ECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcc
Confidence 344553 4457888899999999999999999999999764
No 141
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=35.86 E-value=48 Score=29.65 Aligned_cols=35 Identities=9% Similarity=0.210 Sum_probs=30.4
Q ss_pred EecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCC
Q psy8450 225 YRLPGGSETVINTKSTTVVEDICIEMCQLINVNND 259 (525)
Q Consensus 225 v~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~ 259 (525)
|...+|....+.|++++|+.++-+.|+.+.|++..
T Consensus 110 VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~ 144 (189)
T 3q3f_A 110 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPD 144 (189)
T ss_dssp EECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGG
T ss_pred eecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHH
Confidence 34567888899999999999999999999999764
No 142
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=41.18 E-value=8.1 Score=28.52 Aligned_cols=34 Identities=15% Similarity=0.121 Sum_probs=28.6
Q ss_pred ecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCC
Q psy8450 226 RLPGGSETVINTKSTTVVEDICIEMCQLINVNND 259 (525)
Q Consensus 226 ~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~ 259 (525)
..++|....+++++.+|+.++-+.|+++.|++..
T Consensus 6 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~ 39 (76)
T 3b1l_X 6 RFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPAD 39 (76)
Confidence 3457776788999999999999999999998754
No 143
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=34.58 E-value=60 Score=27.60 Aligned_cols=41 Identities=22% Similarity=0.239 Sum_probs=33.5
Q ss_pred EecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 225 YRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 225 v~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
+...+|....++|++++|+.++-+.|+.+.|++.. ..-|..
T Consensus 86 vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~----~q~L~~ 126 (159)
T 3rt3_B 86 VRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDD----LFWLTF 126 (159)
T ss_dssp EECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGG----GEEEEE
T ss_pred EECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHH----HEEEEE
Confidence 34567888899999999999999999999999753 455654
No 144
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=34.55 E-value=75 Score=25.44 Aligned_cols=41 Identities=2% Similarity=-0.159 Sum_probs=31.5
Q ss_pred CceeeEEe--cCC-CcEEEEEeCCcchHHHHHHHHHHHhCCCCC
Q psy8450 219 NSKRQLYR--LPG-GSETVINTKSTTVVEDICIEMCQLINVNND 259 (525)
Q Consensus 219 ~~~~~iv~--lpd-g~~~~v~v~s~tt~~ev~~~i~~~lgL~~~ 259 (525)
.+.+.++. +.+ +....+.|++.+|+.++-+.|.++.|++..
T Consensus 22 ~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~ 65 (105)
T 4dbg_A 22 DIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPV 65 (105)
T ss_dssp CEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGG
T ss_pred cEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHH
Confidence 45555432 332 346788999999999999999999999876
No 145
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=34.32 E-value=50 Score=28.79 Aligned_cols=34 Identities=9% Similarity=0.226 Sum_probs=30.0
Q ss_pred ecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCC
Q psy8450 226 RLPGGSETVINTKSTTVVEDICIEMCQLINVNND 259 (525)
Q Consensus 226 ~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~ 259 (525)
...+|....+.|++.+|+.++-+.|+.+.|++..
T Consensus 6 k~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~ 39 (169)
T 3l0w_B 6 KTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPD 39 (169)
T ss_dssp EETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTT
T ss_pred EeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHH
Confidence 4557887889999999999999999999998764
No 146
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=34.28 E-value=61 Score=25.15 Aligned_cols=40 Identities=13% Similarity=0.152 Sum_probs=32.6
Q ss_pred CceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCC
Q psy8450 219 NSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNND 259 (525)
Q Consensus 219 ~~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~ 259 (525)
.+.+.| .-.+|....+.|.++|+.+.|.+..|++.|+...
T Consensus 17 ~i~ikV-~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~ 56 (93)
T 2d07_B 17 HINLKV-AGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMR 56 (93)
T ss_dssp EEEEEE-ECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGG
T ss_pred eEEEEE-ECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCcc
Confidence 344453 3457888889999999999999999999999763
No 147
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=34.22 E-value=84 Score=25.88 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=34.8
Q ss_pred ceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEE
Q psy8450 220 SKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCI 270 (525)
Q Consensus 220 ~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~ 270 (525)
....-+.||||+...-.+....|+++|..-|... |... ..|.|+-.
T Consensus 43 ~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~----~~F~L~t~ 88 (124)
T 1wj4_A 43 KAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPN----ERFELLTN 88 (124)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCT----TTEEEECS
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCC----CCeEEecC
Confidence 3333478999998888888999999999999876 5533 46888753
No 148
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=34.02 E-value=59 Score=24.86 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=30.5
Q ss_pred ceeeEEecCCCcEEEE-EeCCcchHHHHHHHHHHHhCCCCC
Q psy8450 220 SKRQLYRLPGGSETVI-NTKSTTVVEDICIEMCQLINVNND 259 (525)
Q Consensus 220 ~~~~iv~lpdg~~~~v-~v~s~tt~~ev~~~i~~~lgL~~~ 259 (525)
+.+.| .. +|....+ ++++..|+.|+-+.|+++.|++..
T Consensus 8 m~i~V-k~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~ 46 (90)
T 1v5t_A 8 LPIIV-KW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPE 46 (90)
T ss_dssp CCEEE-EE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTT
T ss_pred EEEEE-EE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHH
Confidence 44453 44 6666778 999999999999999999999764
No 149
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=34.02 E-value=68 Score=34.84 Aligned_cols=43 Identities=7% Similarity=0.054 Sum_probs=38.0
Q ss_pred EecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEc
Q psy8450 225 YRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVE 272 (525)
Q Consensus 225 v~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~ 272 (525)
|+.+|.++..+.+...+||+||+..+++++|+.+ .++|..+..
T Consensus 357 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~v~~ 399 (694)
T 3cf6_E 357 VYCIDHTYTTIRVPVAASVKEVISAVADKLGSGE-----GLIIVKMNS 399 (694)
T ss_dssp EECTTSCEEEEEEETTCBHHHHHHHHHHHHTCCS-----CEEEEEECT
T ss_pred EEccCCceeEEEeeccccHHHHHHHHHHHhCCcc-----cceEEEEee
Confidence 4578999999999999999999999999999754 599999873
No 150
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=32.65 E-value=63 Score=25.31 Aligned_cols=44 Identities=16% Similarity=0.227 Sum_probs=33.1
Q ss_pred ceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 220 SKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 220 ~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
+.+. +...+|. ..++|++.+|+.++-+.|+++.|++.. .--|+.
T Consensus 23 m~I~-Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~----~QrLi~ 66 (100)
T 1yqb_A 23 IKVT-VKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPD----QLVLIF 66 (100)
T ss_dssp EEEE-EECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGG----GEEEEE
T ss_pred EEEE-EEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChh----hEEEEE
Confidence 4444 3455776 588999999999999999999999753 455544
No 151
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=32.24 E-value=23 Score=28.01 Aligned_cols=31 Identities=10% Similarity=0.062 Sum_probs=27.7
Q ss_pred CCcEEEEEeCCcchHHHHHHHHHHHhCCCCC
Q psy8450 229 GGSETVINTKSTTVVEDICIEMCQLINVNND 259 (525)
Q Consensus 229 dg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~ 259 (525)
+|....+.|++.+|+.++-+.|+.+.|++..
T Consensus 36 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 66 (101)
T 3m63_B 36 GQDKWEVNVAPESTVLQFKEAINKANGIPVA 66 (101)
T ss_dssp SSCCCCBCCCTTSBHHHHHHHHHHHHSCCST
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHCcChH
Confidence 7777788999999999999999999999764
No 152
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=32.01 E-value=52 Score=27.50 Aligned_cols=40 Identities=10% Similarity=0.205 Sum_probs=32.6
Q ss_pred ecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 226 RLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 226 ~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
...+|....+.+++++|+.++.+.|+.+.|++.. ..-|+.
T Consensus 82 k~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~----~qrL~~ 121 (152)
T 3b08_A 82 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPD----QQRLIF 121 (152)
T ss_dssp EESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGG----GEEEEE
T ss_pred eecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChh----hEEEEE
Confidence 4457777889999999999999999999999853 456654
No 153
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=31.66 E-value=52 Score=28.03 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=30.2
Q ss_pred EecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCC
Q psy8450 225 YRLPGGSETVINTKSTTVVEDICIEMCQLINVNND 259 (525)
Q Consensus 225 v~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~ 259 (525)
+...+|....+.|++++|+.++-+.|..+.|++..
T Consensus 7 vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~ 41 (159)
T 3rt3_B 7 VKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAF 41 (159)
T ss_dssp EEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGG
T ss_pred EEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHH
Confidence 34457877889999999999999999999999764
No 154
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=31.45 E-value=72 Score=25.73 Aligned_cols=40 Identities=15% Similarity=0.240 Sum_probs=32.9
Q ss_pred CceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCC
Q psy8450 219 NSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNND 259 (525)
Q Consensus 219 ~~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~ 259 (525)
.+.+.| .-.+|....+.|.+.|+.+.|.+..|++.|+...
T Consensus 26 ~I~IkV-k~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~ 65 (110)
T 2k8h_A 26 LVAVKV-VNADGAEMFFRIKSRTALKKLIDTYCKKQGISRN 65 (110)
T ss_dssp CEEEEE-EETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSS
T ss_pred eEEEEE-ECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcc
Confidence 455554 3457888899999999999999999999999764
No 155
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=31.42 E-value=70 Score=24.45 Aligned_cols=39 Identities=5% Similarity=0.063 Sum_probs=29.5
Q ss_pred ceeeEEecCCCc--EEEEEeCCcchHHHHHHHHHHHh--CCCCC
Q psy8450 220 SKRQLYRLPGGS--ETVINTKSTTVVEDICIEMCQLI--NVNND 259 (525)
Q Consensus 220 ~~~~iv~lpdg~--~~~v~v~s~tt~~ev~~~i~~~l--gL~~~ 259 (525)
+.+. |..+++. ...+.+++.+|+.++-+.|+.+. |+...
T Consensus 8 m~i~-Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~ 50 (93)
T 1wgd_A 8 VTLL-VKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPE 50 (93)
T ss_dssp CEEE-EECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTT
T ss_pred EEEE-EEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChH
Confidence 4444 3456776 45667779999999999999998 88754
No 156
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=30.81 E-value=52 Score=26.39 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=34.6
Q ss_pred ceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 220 SKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 220 ~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
+.+.|. - +|....+.|...|+.+.|.+..|++.|+... .+.+..
T Consensus 32 I~IkV~-~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~----~~rF~F 75 (106)
T 2eke_C 32 INLKVS-D-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMD----SLRFLY 75 (106)
T ss_dssp EEEEEE-C-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGG----GEEEEE
T ss_pred EEEEEe-c-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcc----cEEEEE
Confidence 444543 4 7888899999999999999999999999753 455544
No 157
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=30.32 E-value=73 Score=24.63 Aligned_cols=38 Identities=0% Similarity=0.025 Sum_probs=30.5
Q ss_pred ceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCC
Q psy8450 220 SKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNND 259 (525)
Q Consensus 220 ~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~ 259 (525)
+.+.| .. ++....+.+++.+|+.++-+.|..+.|++..
T Consensus 18 ~~i~V-k~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~ 55 (95)
T 1v86_A 18 VDLKI-IW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPA 55 (95)
T ss_dssp EEEEE-EE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCST
T ss_pred EEEEE-EE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHH
Confidence 44443 44 5666789999999999999999999999864
No 158
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=29.99 E-value=99 Score=25.52 Aligned_cols=47 Identities=17% Similarity=0.214 Sum_probs=34.5
Q ss_pred CceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhC-CCCCCCCcceEEEE
Q psy8450 219 NSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLIN-VNNDLEMEEFSLYC 269 (525)
Q Consensus 219 ~~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lg-L~~~~~~~~FsL~~ 269 (525)
+.....+.||||+...-.+....|++||.+-|..... .. . ..|.|.-
T Consensus 51 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~-~---~~f~L~t 98 (127)
T 1s3s_G 51 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMA-A---TSFVLMT 98 (127)
T ss_dssp CCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGG-T---SCEEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCC-C---CCeEEec
Confidence 3333446899999888889999999999999988742 21 1 4688764
No 159
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=28.76 E-value=79 Score=24.89 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=32.9
Q ss_pred ceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 220 SKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 220 ~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
+.+.| ...+|. ..++|+..+|+.++.+.|+.+.|+... ..-|+.
T Consensus 18 m~I~V-k~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~----~qrLi~ 61 (106)
T 1wx7_A 18 IKVTV-KTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPD----QLVLIF 61 (106)
T ss_dssp EEEEE-ECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTT----TEEEEE
T ss_pred EEEEE-EeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChh----hEEEEE
Confidence 44443 455676 578999999999999999999999753 345543
No 160
>1k8r_B Protein kinase BYR2; signal transduction, cancer, GTPase, ubiquitin fold, signaling protein; HET: GNP; 3.00A {Schizosaccharomyces pombe} SCOP: d.15.1.5 PDB: 1i35_A
Probab=28.73 E-value=1.1e+02 Score=23.91 Aligned_cols=42 Identities=5% Similarity=0.094 Sum_probs=32.0
Q ss_pred cCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcC
Q psy8450 227 LPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEG 273 (525)
Q Consensus 227 lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~ 273 (525)
-.+|..+.|.+...-+ +.+....++.||.++ ..|+++++.++
T Consensus 7 acnGQTRaVq~~~~y~--~~L~~ALkKF~ledp---skw~Vcvtqss 48 (110)
T 1k8r_B 7 ACNGQTRAVQSRGDYQ--KTLAIALKKFSLEDA---SKFIVCVSQSS 48 (110)
T ss_dssp CSTTCEEEEECCSCHH--HHHHHHHHHHTCCCT---TSEEEEEECSS
T ss_pred ecCCceEEeeehhhHH--HHHHHHHHHcCCCCh---hHeEEEEecCc
Confidence 3478878877765544 667777789999888 78999998753
No 161
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=28.36 E-value=1.9e+02 Score=23.97 Aligned_cols=36 Identities=11% Similarity=0.243 Sum_probs=30.4
Q ss_pred EEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEE
Q psy8450 232 ETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIV 271 (525)
Q Consensus 232 ~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~ 271 (525)
...+.|-..+|+.++...|++.+|++. +.+-||...
T Consensus 57 ~~~~rv~k~~~~~~~~~~va~~lg~~~----~~~RlW~~~ 92 (130)
T 2kvr_A 57 YTVFKVLKNSSLAEFVQSLSQTMGFPQ----DQIRLWPMQ 92 (130)
T ss_dssp CEEEECCTTSBHHHHHHHHHHHHCCCG----GGCEEEECC
T ss_pred cceEEEeccCcHHHHHHHHHHHhCCCc----ccEEEEEee
Confidence 457888899999999999999999975 467888765
No 162
>3voq_A Target of rapamycin complex 2 subunit mapkap1; PH domain, membrane protein; 2.00A {Homo sapiens}
Probab=28.31 E-value=2.5e+02 Score=23.12 Aligned_cols=64 Identities=8% Similarity=0.043 Sum_probs=42.0
Q ss_pred eEEEEEccCceEEeecCcc---------ceEEEeecccceeccccccCC-CceEEEEEecccccceEEEEeccc
Q psy8450 440 QQILALNKHGVHFLNLLTH---------ETISSVPYGDVISTRKVRAES-GTLYLEMKCGNLFQQRVARIQTDQ 503 (525)
Q Consensus 440 ~~~LaIn~~Gi~~l~~~tk---------~~l~~~~~~~I~s~~~~~~~~-~~~~~~i~~g~~~~~~~~~~~t~q 503 (525)
++.|||+-+-|++....++ .-..+++++.|......+... ....|.+.+-.....+.+-||+..
T Consensus 31 e~~L~IdGd~ihI~P~~~~k~~~kf~~~~K~ts~~~~~Vv~Ckvs~~~p~s~~~Fklv~~~~~~~KryDFEa~~ 104 (125)
T 3voq_A 31 DVQLGISGDKVEIDPVTNQKASTKFWIKQKPISIDSDLLCACDLAEEKSPSHAIFKLTYLSNHDYKHLYFESDA 104 (125)
T ss_dssp EEEEEECSSEEEEEECC------CSBCCCCCEEEEGGGEEEEEEEEECSSSCEEEEEEEEETTEEEEEEEEECH
T ss_pred eEEEEecCcEEEEeeccCCccccccccCCcceEEeecceEEEEeeccCCCCcceEEEEEeCCCCcccceeEcCc
Confidence 8999999999998865433 234689999998765433111 225566555333456789999875
No 163
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=27.18 E-value=83 Score=26.04 Aligned_cols=51 Identities=10% Similarity=0.223 Sum_probs=36.3
Q ss_pred eEEEEEccCceEEeecCc-cceEEEeecccceeccccccC----C--CceEEEEEecc
Q psy8450 440 QQILALNKHGVHFLNLLT-HETISSVPYGDVISTRKVRAE----S--GTLYLEMKCGN 490 (525)
Q Consensus 440 ~~~LaIn~~Gi~~l~~~t-k~~l~~~~~~~I~s~~~~~~~----~--~~~~~~i~~g~ 490 (525)
+-+--+..++|.++..++ .+....+|++||.++...... . ...+|+|.+++
T Consensus 26 RHYWrLD~K~Itlf~~e~~~~~ykeIpL~eIl~v~~~~~~~~l~~~~~~hcFEi~T~~ 83 (125)
T 2coa_A 26 RHYWRLDCKCITLFQNNTTNRYYKEIPLSEILTVESAQNFSLVPPGTNPHCFEIVTAN 83 (125)
T ss_dssp EEEEEECSSEEEEESSSSCSSCSEEEETTTCCEEEESCCCSSSCTTSCCEEEEEECSS
T ss_pred ceeeEecCCeEEEEecCCCCceeeeeehhHeecccccccccccCCCCCCceEEEEeCC
Confidence 345566788898876665 578899999999998765311 1 23789987654
No 164
>3ec8_A Putative uncharacterized protein FLJ10324; beta barrel, helix, structural genomics, structural genomics consortium, SGC, cell adhesion; 2.60A {Homo sapiens}
Probab=25.93 E-value=1.6e+02 Score=25.47 Aligned_cols=64 Identities=9% Similarity=0.123 Sum_probs=44.7
Q ss_pred CCHHHHHHHHcCCCceeeEE---ecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEE
Q psy8450 206 PSVEEVTAVSAGRNSKRQLY---RLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIV 271 (525)
Q Consensus 206 Ps~~Ei~a~~~~~~~~~~iv---~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~ 271 (525)
+...|+.+-.+ .+=.+.|| .-+|..++.+-.....++++++.++.++-||.... ...|+|..+.
T Consensus 23 ~~p~els~~~~-~PG~LKIfG~~L~~G~~YKSvLas~rstA~elVkEALERYgL~ke~-~~~y~Lcdvi 89 (166)
T 3ec8_A 23 MDPAELSTQLS-APGVLKVFGDSVCTGTHYKSVLATGTSSARELVKEALERYALDPRQ-AGQYVLCDVV 89 (166)
T ss_dssp CCHHHHHHHHH-CEEEEEEECCC--CCSCCEEEEEETTCCHHHHHHHHHHHTTSCGGG-GGGEEEEEEE
T ss_pred CChHHcccccC-CCcceEecccccCCCCCceeeeccccccHHHHHHHHHHHhccCcCC-cceeEEEEee
Confidence 45566665443 22233433 14666788888899999999999999999996532 3679998875
No 165
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=25.69 E-value=77 Score=25.95 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=35.7
Q ss_pred CCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhh
Q psy8450 229 GGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILD 288 (525)
Q Consensus 229 dg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~D 288 (525)
+.+...++|+++.|+.+|-+.|..+.|+... .--|+. +|+ .|.++..+.|
T Consensus 10 ~ktti~lev~~sdTV~~lK~kI~~~egIP~~----qQrLi~--~Gk----~LeD~~TLsd 59 (118)
T 2fnj_B 10 HKTTIFTDAKESSTVFELKRIVEGILKRPPE----EQRLYK--DDQ----LLDDGKTLGE 59 (118)
T ss_dssp BTEEEEEEEETTSBHHHHHHHHHHHHCCCGG----GEEEEE--TTE----ECCTTSBHHH
T ss_pred CCEEEEEEeCCcChHHHHHHHHHHHhCCCHH----HeEEEE--CCe----ECCCCCCHHH
Confidence 4455778999999999999999999999763 466653 332 3555544443
No 166
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=25.62 E-value=1.6e+02 Score=24.01 Aligned_cols=74 Identities=8% Similarity=0.135 Sum_probs=44.0
Q ss_pred HHHHHHcCCCceeeEEe-------cCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCC
Q psy8450 210 EVTAVSAGRNSKRQLYR-------LPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAK 282 (525)
Q Consensus 210 Ei~a~~~~~~~~~~iv~-------lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~ 282 (525)
|.+.+....|-.+.|+. +|+=...-+-|.+..|+++++.-|-++|+|+.. + +||+..++ . . ...
T Consensus 19 e~~~ir~kyP~riPVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~---~--alFl~Vn~-~--~-p~~ 89 (118)
T 3rui_B 19 ESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPE---K--AIFIFVND-T--L-PPT 89 (118)
T ss_dssp HHHHHHHHCSSEEEEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTT---C--CEEEEBTT-B--C-CCT
T ss_pred HHHHHHHhCCCceEEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCC---c--cEEEEECC-c--c-CCc
Confidence 55555555555555433 221122245688889999999999999999875 3 45555543 2 2 234
Q ss_pred cchhhhhhHH
Q psy8450 283 EEYILDVTTE 292 (525)
Q Consensus 283 ~~~i~Dvl~~ 292 (525)
+..+.++-.+
T Consensus 90 ~~~m~~lY~~ 99 (118)
T 3rui_B 90 AALMSAIYQE 99 (118)
T ss_dssp TSBHHHHHHH
T ss_pred cchHHHHHHH
Confidence 5555555443
No 167
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=25.18 E-value=1e+02 Score=24.18 Aligned_cols=39 Identities=8% Similarity=0.033 Sum_probs=29.2
Q ss_pred CceeeEEecCCCc--EEEEEeCCcchHHHHHHHHHHHh-CCCC
Q psy8450 219 NSKRQLYRLPGGS--ETVINTKSTTVVEDICIEMCQLI-NVNN 258 (525)
Q Consensus 219 ~~~~~iv~lpdg~--~~~v~v~s~tt~~ev~~~i~~~l-gL~~ 258 (525)
.+.+. |..++|. ...+++++.+|+.++-+.|..++ |...
T Consensus 23 ~m~I~-VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp 64 (99)
T 2kdb_A 23 PVTLI-IKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPL 64 (99)
T ss_dssp CEEEE-EECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCC
T ss_pred eEEEE-EEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCC
Confidence 35455 4566776 46788899999999999999976 5543
No 168
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=25.07 E-value=1.7e+02 Score=23.94 Aligned_cols=74 Identities=7% Similarity=0.121 Sum_probs=43.3
Q ss_pred HHHHHHcCCCceeeEEe--cCC-----CcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCC
Q psy8450 210 EVTAVSAGRNSKRQLYR--LPG-----GSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAK 282 (525)
Q Consensus 210 Ei~a~~~~~~~~~~iv~--lpd-----g~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~ 282 (525)
|.+.+....|-.+.|+. .++ =...-+-|.+..|+++++.-|-++|+|... + +||+..++ . .| ..
T Consensus 20 e~~~ir~kyP~rIPVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~---~--alFl~Vn~-~--~p-~~ 90 (119)
T 3h9d_A 20 DAAKVRERHPDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAE---S--ALFVYTND-T--VL-PS 90 (119)
T ss_dssp HHHHHHHHSTTEEEEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTT---S--CCEEEETT-E--EC-CT
T ss_pred HHHHHHHHCCCeEEEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCcc---c--eEEEEECC-c--CC-Cc
Confidence 44555554555554433 221 112235678889999999999999999876 3 44544443 2 22 44
Q ss_pred cchhhhhhHH
Q psy8450 283 EEYILDVTTE 292 (525)
Q Consensus 283 ~~~i~Dvl~~ 292 (525)
+..+.++-..
T Consensus 91 ~~~m~~lY~~ 100 (119)
T 3h9d_A 91 SAQMADIYSK 100 (119)
T ss_dssp TSBHHHHHHH
T ss_pred cchHHHHHHH
Confidence 5555555443
No 169
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=24.82 E-value=1.2e+02 Score=23.04 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=28.8
Q ss_pred ceeeEEecCCCcEEEEEeCCc-----chHHHHHHHHHHHhCCCCC
Q psy8450 220 SKRQLYRLPGGSETVINTKST-----TVVEDICIEMCQLINVNND 259 (525)
Q Consensus 220 ~~~~iv~lpdg~~~~v~v~s~-----tt~~ev~~~i~~~lgL~~~ 259 (525)
+.+.| ... |....+.+++. +|+.++.+.|..+.|++..
T Consensus 8 ~~v~V-k~~-~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~ 50 (92)
T 1wxv_A 8 LTVTV-THS-NEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQS 50 (92)
T ss_dssp EEEEE-ECS-SSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTT
T ss_pred EEEEE-EEC-CEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHH
Confidence 44443 344 55567899985 9999999999999999854
No 170
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=24.52 E-value=1.3e+02 Score=23.28 Aligned_cols=34 Identities=9% Similarity=0.064 Sum_probs=28.3
Q ss_pred EecCCCcEE-EEEeCCcchHHHHHHHHHHHhCCCCC
Q psy8450 225 YRLPGGSET-VINTKSTTVVEDICIEMCQLINVNND 259 (525)
Q Consensus 225 v~lpdg~~~-~v~v~s~tt~~ev~~~i~~~lgL~~~ 259 (525)
+.. +|... .+++++..|+.++-+.|+++.|+...
T Consensus 12 Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~ 46 (96)
T 1wgg_A 12 VKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPA 46 (96)
T ss_dssp EEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTT
T ss_pred EEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHH
Confidence 344 56667 58999999999999999999999864
No 171
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=23.83 E-value=1.6e+02 Score=27.00 Aligned_cols=52 Identities=17% Similarity=0.208 Sum_probs=35.5
Q ss_pred EEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhh
Q psy8450 234 VINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILD 288 (525)
Q Consensus 234 ~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~D 288 (525)
++.+....|++++.+.+|+.++|... ..+-||....+.......+.+..+-|
T Consensus 155 ~~~~Sk~~ti~~l~~~~~~~~~i~~~---~~~RLW~~~~~~~~~~L~~~~~tl~d 206 (231)
T 3jyu_A 155 SCHFSKADTIATIEKEMRKLFNIPAE---RETRLWNKYMSNTYEQLSKLDNTIQD 206 (231)
T ss_dssp EEEECTTCBHHHHHHHHHHHTTCCTT---SCEEEEECSSSSSCEECCCTTSBTTT
T ss_pred EEEecccCcHHHHHHHHHHHhCCCCC---CeEEEEEecCCCCHhhhcCCCCCHHH
Confidence 35568889999999999999999764 46888876543333433333344444
No 172
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B
Probab=23.39 E-value=2.9e+02 Score=22.14 Aligned_cols=78 Identities=10% Similarity=0.076 Sum_probs=51.5
Q ss_pred eEEEEEccCceEEeecCccceEEEeecccceeccccccCCCceEEEEEecccccceEEEEecc-----cHHHHHHHHHHH
Q psy8450 440 QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNLFQQRVARIQTD-----QAHEIARLIRQY 514 (525)
Q Consensus 440 ~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~~~~~~~~~~t~-----qa~ei~~LI~~Y 514 (525)
.-.|.+..+-|........++..+++|.+|.+-...++....+.+.|-.-+ ..+.+|.|..+ ++..+-+++..-
T Consensus 21 dGtL~l~~d~i~W~p~~~~~~~vs~~~~~I~~qq~SP~~k~KVqLqi~l~~-~~~~~F~Ftn~~~a~~erd~VKd~L~~~ 99 (108)
T 1pfj_A 21 DGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGKAKIQLQLVLHA-GDTTNFHFSNESTAVKERDAVKDLLQQL 99 (108)
T ss_dssp BCEEEEETTEEEEECSSSSSCSEEEETTTCCCEEECCSSSSSCEEEEECSS-SCEEEEECCCSSCTTHHHHHHHHHHHHH
T ss_pred CceEEEEcceEEEccCCCCCceEEEehhhhhcceeCCCCCccEEEEEEEeC-CCceEEEEcCcHHHHHHHHHHHHHHHHH
Confidence 456777777777777555778888899999986655443334666665443 24567888764 456777777766
Q ss_pred HHHH
Q psy8450 515 MSLD 518 (525)
Q Consensus 515 i~~~ 518 (525)
+..+
T Consensus 100 l~~~ 103 (108)
T 1pfj_A 100 LPKF 103 (108)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 173
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=22.80 E-value=18 Score=30.06 Aligned_cols=34 Identities=9% Similarity=0.226 Sum_probs=0.0
Q ss_pred ecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCC
Q psy8450 226 RLPGGSETVINTKSTTVVEDICIEMCQLINVNND 259 (525)
Q Consensus 226 ~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~ 259 (525)
...+|....+.|++++|+.++-+.|+...|++..
T Consensus 6 k~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 39 (128)
T 3u5e_m 6 KTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPD 39 (128)
T ss_dssp ----------------------------------
T ss_pred EeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChH
Confidence 3457777889999999999999999999998764
No 174
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=22.52 E-value=1.8e+02 Score=24.03 Aligned_cols=50 Identities=12% Similarity=0.167 Sum_probs=33.4
Q ss_pred EEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEEEcCCceeecCCCcchhhhhhHH
Q psy8450 234 VINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTE 292 (525)
Q Consensus 234 ~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~~~~~~~~~~L~~~~~i~Dvl~~ 292 (525)
-+-|.+..|+++++..|-++|+|+.. + |||+..++ . . ...+..+.++-.+
T Consensus 56 KflVp~~~tv~qf~~~IRkrl~L~~~---~--alFl~Vnn-~--l-Ps~s~~m~~lY~~ 105 (125)
T 3m95_A 56 KYLVPSDLTVGQFYFLIRKRIHLRPE---D--ALFFFVNN-V--I-PPTSATMGSLYQE 105 (125)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTT---S--CCEEEBTT-B--C-CCTTSBHHHHHHH
T ss_pred EEEcCCCCEeeeehhhhHhhcCCCcc---c--cEEEEECC-c--c-CCccchHHHHHHH
Confidence 35678889999999999999999875 3 45555543 2 2 2344555555443
No 175
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=22.20 E-value=1.2e+02 Score=26.10 Aligned_cols=34 Identities=9% Similarity=0.227 Sum_probs=29.6
Q ss_pred ecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCC
Q psy8450 226 RLPGGSETVINTKSTTVVEDICIEMCQLINVNND 259 (525)
Q Consensus 226 ~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~ 259 (525)
...+|....+.++++.|+.++-+.|..+.|++..
T Consensus 102 k~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~ 135 (172)
T 3u30_A 102 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPD 135 (172)
T ss_dssp EESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGG
T ss_pred ecccCcceeEEecCCCCHHHHHHHHHHHhCCCce
Confidence 4467777889999999999999999999999764
No 176
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=22.00 E-value=1e+02 Score=25.11 Aligned_cols=46 Identities=20% Similarity=0.157 Sum_probs=35.9
Q ss_pred CceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE
Q psy8450 219 NSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 219 ~~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~ 269 (525)
.+.+.| .-.||....+.|...|+.+.|.+..|++.|+... .+.++.
T Consensus 40 ~I~LKV-~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~----~irFlF 85 (115)
T 3kyd_D 40 YIKLKV-IGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN----SLRFLF 85 (115)
T ss_dssp EEEEEE-ECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTT----SEEEEE
T ss_pred eEEEEE-EcCCCCEEEEEEccCChHHHHHHHHHHHhCCChh----hEEEEE
Confidence 345554 4567888889999999999999999999999764 455554
No 177
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=21.99 E-value=2.7e+02 Score=21.38 Aligned_cols=41 Identities=5% Similarity=-0.017 Sum_probs=31.8
Q ss_pred ecCCCc--EEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEEE
Q psy8450 226 RLPGGS--ETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCI 270 (525)
Q Consensus 226 ~lpdg~--~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~~ 270 (525)
.-+++. ...+.++++.|+.++-+.|..+.|++.. .--|+..
T Consensus 21 t~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~----~QrL~~~ 63 (95)
T 2kjr_A 21 SNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAG----TMKVQVF 63 (95)
T ss_dssp EESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTT----TEEEEEE
T ss_pred EECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHH----HeEEEEe
Confidence 445553 5678899999999999999999999875 3455554
No 178
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=20.27 E-value=51 Score=26.08 Aligned_cols=29 Identities=3% Similarity=0.082 Sum_probs=24.8
Q ss_pred cEEEEEeCCcchHHHHHHHHHH--HhCCCCC
Q psy8450 231 SETVINTKSTTVVEDICIEMCQ--LINVNND 259 (525)
Q Consensus 231 ~~~~v~v~s~tt~~ev~~~i~~--~lgL~~~ 259 (525)
..+.++++++.|.+|+++.+++ ++.++.+
T Consensus 5 ~~~~l~v~~~~TL~~lid~L~~~p~~qlk~P 35 (98)
T 1y8x_B 5 LPQNIQFSPSAKLQEVLDYLTNSASLQMKSP 35 (98)
T ss_dssp CCCCEECCTTCBHHHHHHHHHHCTTCCCSSC
T ss_pred CcEEEEECCchhHHHHHHHHHhChHhhccCC
Confidence 3456899999999999999999 6788887
No 179
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=20.18 E-value=2e+02 Score=23.89 Aligned_cols=49 Identities=8% Similarity=0.113 Sum_probs=32.8
Q ss_pred EEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEEEE-EEcCCceeecCCCcchhhhhhH
Q psy8450 234 VINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYC-IVEGDAFTMPLAKEEYILDVTT 291 (525)
Q Consensus 234 ~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL~~-~~~~~~~~~~L~~~~~i~Dvl~ 291 (525)
-+-|....|+++++.-|-++|+|... =+||+ ..+ +. .| ..+..+.++-.
T Consensus 56 KflVp~~~tv~qf~~~iRkrL~l~~~-----~alFl~~vn-~~--~p-~~~~~m~~lY~ 105 (130)
T 2zjd_A 56 KFLVPDHVNMSELIKIIRRRLQLNAN-----QAFFLLVNG-HS--MV-SVSTPISEVYE 105 (130)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCTT-----CCEEEEETT-TE--EC-CTTSBHHHHHH
T ss_pred EEEcCCCCcHHHHHHHHHHHhCCCCC-----ceEEEEEEC-Cc--cC-CccchHHHHHH
Confidence 35678888999999999999999875 25666 443 32 22 34455555443
No 180
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=20.01 E-value=75 Score=24.31 Aligned_cols=40 Identities=10% Similarity=0.071 Sum_probs=29.4
Q ss_pred ecCCCcEEEEEeC--CcchHHHHHHHH-HHHhCCCCCCCCcceEEEE
Q psy8450 226 RLPGGSETVINTK--STTVVEDICIEM-CQLINVNNDLEMEEFSLYC 269 (525)
Q Consensus 226 ~lpdg~~~~v~v~--s~tt~~ev~~~i-~~~lgL~~~~~~~~FsL~~ 269 (525)
.-.+|....++|+ +++|+.++-+.| +.+-|++.. .--|..
T Consensus 7 Ktl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~----~QrLi~ 49 (87)
T 2lxa_A 7 KKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHIS----EIKLLL 49 (87)
T ss_dssp EECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSST----TEEEEE
T ss_pred EcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChH----HEEEEE
Confidence 4456665667655 999999999999 888888764 455554
Done!