RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8450
(525 letters)
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein
cargo binding, cargo proteins, motor protein-protein
transport complex; 2.80A {Mus musculus}
Length = 655
Score = 243 bits (620), Expect = 6e-73
Identities = 88/571 (15%), Positives = 193/571 (33%), Gaps = 87/571 (15%)
Query: 12 EDDGKHSLLQFAMHHFRQF-------ENLKTATGELTTGTGHKKSSSDWTWREQLDLVKF 64
ED ++ +FA +F+ LK + + W +
Sbjct: 30 EDLSEYKFAKFAATYFQGTTTHSYTRRPLKQPLLYHDDEGDQLAALAVW------ITILR 83
Query: 65 TCVPISEPLLKLEPPLAEIAVECFECIMRFMGDLPTTPDL-------------------- 104
+ EP + I +G +L
Sbjct: 84 FMGDLPEPKYHTAMSDGSEKIPVMTKIYETLGKKTYKRELQALQGEGEVTKRLNDGESTV 143
Query: 105 -----------TEVKCVYTILMHCHTHEPLRDEVYCQLMKQTTSN-KTESCQRGWRLLSI 152
+ ++ ++ I+ + LRDE+YCQ+ KQ T N S RGW L+S+
Sbjct: 144 QGNSMLEDRPTSNLEKLHFIIGNGILRPALRDEIYCQISKQLTHNPSKSSYARGWILVSL 203
Query: 153 VAAYFTCSDTLRPFLLKYLETAAYDKRRAFHGTASVCLQNLRKTLRYGGRKNVPSVEEVT 212
F S+ +L ++ G A C + LR+T G R PS E+
Sbjct: 204 CVGCFAPSEKFVKYLRNFIHGGP-------PGYAPYCEERLRRTFVNGTRTQPPSWLELQ 256
Query: 213 AVSAGRNSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVE 272
A + + + + G ++T++ +TT ++C + I++ + FSLY I
Sbjct: 257 ATKSKKPIMLPVTFMDGTTKTLLTDSATT-ARELCNALADKISLK---DRFGFSLY-IAL 311
Query: 273 GDAFTMPLAKEEYILDVTTEL---------HKNQQVFYLIFCRSVWYFP-LRLDCQLYVQ 322
D + + ++++D ++ + + L F + V+ + +
Sbjct: 312 FDKVSSLGSGSDHVMDAISQCEQYAKEQGAQERNAPWRLFFRKEVFTPWHNPSEDNVATN 371
Query: 323 VLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRAADMSHPPAMKETKFLLPKP 382
+++ Q+ G + + + +A + ++M + +P
Sbjct: 372 LIYQQVVRGVKFGEYRCEKEDDLAE-----LASQQYFVDYGSEMILERLLSLVPTYIPDR 426
Query: 383 ALTQRDIKPAQWVQMVQSHWTQTAPLHS----IQAKAQLLEIL-SKWPLFGSSFFAIKR- 436
+T +W Q+ + + + K ++ KWPL S F+ +
Sbjct: 427 EITPLK-NLEKWAQLAIAAHKKGIYAQRRTDSQKVKEDVVNYARFKWPLLFSRFYEAYKF 485
Query: 437 -----NGDQQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNL 491
I+A+N GV+F++ + + + + ++++ R +
Sbjct: 486 SGPPLPKSDVIVAVNWTGVYFVD-EQEQVLLELSFPEIMAVSSSR--GTKMMAPSFTLAT 542
Query: 492 FQQRVARIQTDQAHEIARLIRQYMSLDRQKN 522
+ + A +I L+ ++ R+++
Sbjct: 543 IKGDEYTFTSSNAEDIRDLVVTFLEGLRKRS 573
>3au4_A Myosin-X; protein-protein complex, motor protein cargo
transportation, protein-apoptosis complex; 1.90A {Homo
sapiens} PDB: 3au5_A 3pzd_A
Length = 555
Score = 239 bits (609), Expect = 3e-72
Identities = 83/540 (15%), Positives = 178/540 (32%), Gaps = 66/540 (12%)
Query: 29 QFENLKTATGELTTGTGHKKSSSDWTWREQLDLVKFTCVPISEPLLKL---EPPLAEIAV 85
+ L ++ + R ++++T P+ PLL L + L +
Sbjct: 22 PTQQL---IQDIKENCLNSDVVEQIYKRN--PILRYTHHPLHSPLLPLPYGDINLNLLKD 76
Query: 86 ECFEC-----IMRFMGDLPTTPDLTEVKCVYTILMHCHTHEPLRDEVYCQLMKQTTSNKT 140
+ + I F + + IL H PLRDE+YCQL+KQT
Sbjct: 77 KGYTTLQDEAIKIFNSLQQLESMSDPIPIIQGILQTGHDLRPLRDELYCQLIKQTNKVPH 136
Query: 141 ---ESCQRGWRLLSIVAAYFTCSDTLRPFLLKYLETAAYDKRRAFHGTASVCLQNLRKTL 197
W++L+ ++ F S + +L +L+ L
Sbjct: 137 PGSVGNLYSWQILTCLSCTFLPSRGILKYLKFHLKRIREQFPGTEMEK--YALFTYESLK 194
Query: 198 RYGGRKNVPSVEEVTAVSAGRNSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVN 257
+ R+ VPS +E+ A+ + +Y GGS + TT ++ ++ + + +
Sbjct: 195 KTKCREFVPSRDEIEALIHRQEMTSTVYCHGGGSCKITINSHTT-AGEVVEKLIRGLAME 253
Query: 258 NDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHKNQQVFYLIFCRSVWYFPLRL-- 315
+ M F+L+ + + DV + K + +YF L
Sbjct: 254 DSRNM--FALFE--YNGHVDKAIESRTVVADVLAKFEKLAATSEVGDLPWKFYFKLYCFL 309
Query: 316 ------DCQLYVQVLFNQIAPDYLEGLLLVLPNEQI---------------------PQD 348
+ +F Q + G P +
Sbjct: 310 DTDNVPKDSVEFAFMFEQAHEAVIHGHHPAPEENLQVLAALRLQYLQGDYTLHAAIPPLE 369
Query: 349 IVYDVAKLAALLHRAADMSHPPAMKETKFLLPK--PALTQRDIKPAQWVQMVQSHWTQTA 406
VY + +L A + ++ + + + + + + W +
Sbjct: 370 EVYSLQRLKARISQSTKTFSFRTGSVVRQKVEEEQMLDMWIKEEVSSARASIIDKWRKFQ 429
Query: 407 PLHSIQAKAQLLEILSKWPLFGSSFFAIKRNGDQQ----ILALNKHGVHFLNLLTHETIS 462
++ QA A+ + ++ +WP +GS+ F ++ L ++ V +
Sbjct: 430 GMNQEQAMAKYMALIKEWPGYGSTLFDVECKEGGFPQELWLGVSADAVSVYKRGEGRPLE 489
Query: 463 SVPYGDVISTRKVRAESGTLYLEMKCGNLFQQRVARIQTDQAHEIARLIRQYMSLDRQKN 522
Y ++S A + + + +R +T + ++A+L++ Y+S+ +K
Sbjct: 490 VFQYEHILSFGAPLANTYKI--------VVDERELLFETSEVVDVAKLMKAYISMIVKKR 541
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton,
M phosphoprotein, cell adhesion, structural protein;
1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Length = 371
Score = 97.7 bits (243), Expect = 3e-22
Identities = 65/335 (19%), Positives = 124/335 (37%), Gaps = 43/335 (12%)
Query: 195 KTLRYGGRKNVPSVEEVTAVSAGRNSKRQLY-RLPGGSETVINTKSTTVVEDICIEMCQL 253
K L Y +N ++E R +R L R+ G+ I + V D+ + +C
Sbjct: 66 KALDYYMLRNGDTMEY-------RKKQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICAR 118
Query: 254 INVNNDLEMEEFSL-YCIVEGDAFTMPLAKEEYILDVTTELHK--NQQVFYLIFCRSVWY 310
I + +E+SL ++E E LD L + ++ L+ R +Y
Sbjct: 119 IGI---TNHDEYSLVRELMEEKK-----DDELNWLDHGRTLREQGVEEHETLLLRRKFFY 170
Query: 311 FPLRLDCQLYVQV--LFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRAADMSH 368
+D + VQ+ L+ Q D L G V ++ + A + H
Sbjct: 171 SDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDK---------ACEFAGFQCQIQFGPH 221
Query: 369 PPAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLFG 428
+ FL K L + +K + + + + I+AK + +++ +G
Sbjct: 222 NEQKHKAGFLDLKDFLPKEYVKQ-KGERKIFQAHKNCGQMSEIEAKVRYVKLARSLKTYG 280
Query: 429 SSFFAIKRNGDQQI------LALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTL 482
SFF +K + L + K V ++ T E I ++ ++ +
Sbjct: 281 VSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNI---KRW--AASPK 335
Query: 483 YLEMKCGNLFQQRVARIQTDQAHEIARLIRQYMSL 517
+ G+ Q +QT + +IA+LI Y+ +
Sbjct: 336 SFTLDFGDY-QDGYYSVQTTEGEQIAQLIAGYIDI 369
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein
interaction, GTP binding, CYTO protein binding; HET:
GSP; 1.95A {Homo sapiens}
Length = 322
Score = 92.7 bits (230), Expect = 7e-21
Identities = 47/322 (14%), Positives = 108/322 (33%), Gaps = 56/322 (17%)
Query: 235 INTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELH 294
+ + T V+ I E +L + + F+++ + + ++ L L +
Sbjct: 22 LKHGNNTTVQQIM-EGMRL----SQETQQYFTIW--ICSENLSLQLKPYHKPLQHVRDWP 74
Query: 295 K------NQQVFY---LIFCRSVWYFPLRLDCQL----YVQVLFNQIAPDYLEGLLLVLP 341
+ N +F R PL ++ Q+ + +LF++ + L+G
Sbjct: 75 EILAELTNLDPQRETPQLFLRRDVRLPLEVEKQIEDPLAILILFDEARYNLLKGFYTAPD 134
Query: 342 NEQIPQDIVYDVAKLAALLHRAA-----DMSHPPAMKETKFLLPKPALTQRDIKPAQWVQ 396
+ LA+LL + H + L +T+ K W
Sbjct: 135 A---------KLITLASLLLQIVYGNYESKKHKQGFLNEENLKSIVPVTKLKSKAPHWTN 185
Query: 397 MVQSHWTQTAPLHSIQAKAQL-----LEILSKWPLFGSSFFAIKRNGDQQ---------I 442
+ + + + + L+ + P +G++FF +
Sbjct: 186 RILHEYKNLSTSEGVSKEMHHLQRMFLQNCWEIPTYGAAFFTGQIFTKASPSNHKVIPVY 245
Query: 443 LALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNLFQQRVARIQTD 502
+ +N G+H LN+ T + S+ YG + G + ++ + + T
Sbjct: 246 VGVNIKGLHLLNMETKALLISLKYGC------FMWQLGDTDTCFQIHSMENKMSFIVHTK 299
Query: 503 QAHEIARLIRQYMS--LDRQKN 522
QA + +L+ + + ++N
Sbjct: 300 QAGLVVKLLMKLNGQLMPTERN 321
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2,
FERM domain, transferase; 3.25A {Homo sapiens}
Length = 392
Score = 91.0 bits (225), Expect = 5e-20
Identities = 51/342 (14%), Positives = 108/342 (31%), Gaps = 16/342 (4%)
Query: 197 LRYGGRKNVPSVEEVTAVSAGRNSKRQLYR---LPGGSETVINTKSTTVVEDICIEMCQL 253
+ G + + V R K Y PG + ++ T + +I +
Sbjct: 1 MELGPAEPMVVVPVDVEKEDVRILKVCFYSNSFNPGKNFKLVKCTVQTEIREIITSILLS 60
Query: 254 INVNNDL-EMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHKNQQVFYLIFCRSVWYFP 312
+ ++ E + L L + + +V + + + Y P
Sbjct: 61 GRIGPNIRLAECYGLRLKHMKSDEIHWLHPQMTVGEVQDKYECLHVEAEWRYDLQIRYLP 120
Query: 313 -----LRLDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDV-AKLAALLHRAADM 366
+ + + + Q+ DY++ + Q ++ + H A D
Sbjct: 121 EDFMESLKEDRTTLLYFYQQLRNDYMQRYASKVSEGMALQLGCLELRRFFKDMPHNALDK 180
Query: 367 SHPPAMKETKFLLPK--PALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKW 424
+ E + L P Q ++KP Q+ +M+Q + Q A L + + L+ +
Sbjct: 181 KSNFELLEKEVGLDLFFPKQMQENLKPKQFRKMIQQTFQQYASLREEECVMKFFNTLAGF 240
Query: 425 PLFGSSFFAIKRNGDQQI---LALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGT 481
+ + I L + G+ L + + + S R + E G
Sbjct: 241 ANIDQETYRCELIQGWNITVDLVIGPKGIRQLTSQDAKPTCLAEFKQIRSIRCLPLEEGQ 300
Query: 482 LYLEMKCGNLFQQRVARIQT-DQAHEIARLIRQYMSLDRQKN 522
L++ Q + + +A +A LI Y L +
Sbjct: 301 AVLQLGIEGAPQALSIKTSSLAEAENMADLIDGYCRLQGEHQ 342
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion;
2.05A {Mus musculus}
Length = 222
Score = 77.2 bits (190), Expect = 3e-16
Identities = 44/242 (18%), Positives = 89/242 (36%), Gaps = 37/242 (15%)
Query: 294 HKNQQVFYLIFCRSVWYFPLRLDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDV 353
H + L ++++ R QL + L+ Q D L G V ++
Sbjct: 5 HHHSSGVDLGT-ENLYFQSSRDPVQLNL--LYVQARDDILNGSHPVSFDK---------A 52
Query: 354 AKLAALLHRAA-----DMSHPPAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPL 408
+ A + + H + K LPK + Q + + + +
Sbjct: 53 CEFAGFQCQIQFGPHNEQKHKAGFLDLKDFLPKEYVKQ------KGERKIFQAHKNCGQM 106
Query: 409 HSIQAKAQLLEILSKWPLFGSSFFAIKRNGDQQ------ILALNKHGVHFLNLLTHETIS 462
I+AK + +++ +G SFF +K + +L + K V ++ T E I
Sbjct: 107 SEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQ 166
Query: 463 SVPYGDVISTRKVRAESGTLYLEMKCGNLFQQRVARIQTDQAHEIARLIRQY--MSLDRQ 520
++ ++ A + L+ +Q +QT + +IA+LI Y + L ++
Sbjct: 167 EWSLTNI---KRWAASPKSFTLDFGD---YQDGYYSVQTTEGEQIAQLIAGYIDIILKKK 220
Query: 521 KN 522
K+
Sbjct: 221 KS 222
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton,
structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1
b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A
2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B
Length = 206
Score = 73.0 bits (179), Expect = 5e-15
Identities = 39/205 (19%), Positives = 73/205 (35%), Gaps = 32/205 (15%)
Query: 324 LFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRAAD-----MSHPPAMKETKFL 378
L+ Q D L G V ++ + A + H P E K
Sbjct: 21 LYVQARDDILNGSHPVSFDK---------ACEFAGYQCQIQFGPHNEQKHKPGFLELKDF 71
Query: 379 LPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLFGSSFFAIKRNG 438
LPK + Q + + + + I+AK + +++ +G SFF +K
Sbjct: 72 LPKEYIKQ------KGERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTYGVSFFLVKEKM 125
Query: 439 DQQI------LALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNLF 492
+ L + K V ++ T E I ++ ++ A + L+ +
Sbjct: 126 KGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNI---KRWAASPKSFTLDFGD---Y 179
Query: 493 QQRVARIQTDQAHEIARLIRQYMSL 517
Q +QT + +IA+LI Y+ +
Sbjct: 180 QDGYYSVQTTEGEQIAQLIAGYIDI 204
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein,
cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP:
a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Length = 314
Score = 71.6 bits (175), Expect = 8e-14
Identities = 37/249 (14%), Positives = 91/249 (36%), Gaps = 27/249 (10%)
Query: 212 TAVSAGRNSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIV 271
+++ + + + +E N + +D+ +C+ + + E F L +
Sbjct: 13 SSLKRKQPKTFTVRIVTMDAEMEFNCEMKWKGKDLFDLVCRTLGL---RETWFFGLQYTI 69
Query: 272 EGDAFTMPLAKEEYILDVTTELHKNQQVFYLIFCRSVWYFP---LRLDCQLYVQVLFNQI 328
+ + + K+ V ++ F + +Y L ++ + F Q+
Sbjct: 70 KDTVAWLKMDKK-----VLDHDVSKEEPVTFHF-LAKFYPENAEEELVQEITQHLFFLQV 123
Query: 329 APDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRAA-----DMSHPPAMKETKFLLPKPA 383
L+ + P LA+ +A H + LLPK
Sbjct: 124 KKQILDEKIYCPPEA---------SVLLASYAVQAKYGDYDPSVHKRGFLAQEELLPKRV 174
Query: 384 LTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLFGSSFFAIK-RNGDQQI 442
+ + P W + + + + + +A+ + L+I ++G ++FAI+ + G + +
Sbjct: 175 INLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFAIRNKKGTELL 234
Query: 443 LALNKHGVH 451
L ++ G+H
Sbjct: 235 LGVDALGLH 243
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP:
a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Length = 375
Score = 61.0 bits (147), Expect = 3e-10
Identities = 45/318 (14%), Positives = 87/318 (27%), Gaps = 34/318 (10%)
Query: 228 PGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYIL 287
P ++I T V I ++ V N + + L L + +
Sbjct: 19 PTTWASIIRHGDATDVRGIIQKIVDCHKVKN---VACYGLRLSHLQSEEVHWLHLDMGVS 75
Query: 288 DVTTELHKNQQVFYLIFCRSVWYFP-----LRLDCQLYVQVLFNQIAPDYLEGLLLVLPN 342
+V + + + Y P + + + + Q+ DY+ + +
Sbjct: 76 NVREKFELAHPPEEWKYELRIRYLPKGFLNQFTEDKPTLNFFYQQVKNDYMLEIADQVDQ 135
Query: 343 EQIPQDIVYDVAKLAALLHRAADMSHPPAMKETKFLLPK-----------PALTQRDIKP 391
E + L L R + E K P +K
Sbjct: 136 EIALK--------LGCLEIRRSYGEMRGNALEKKSNYEVLEKDVGLRRFFPKSLLDSVKA 187
Query: 392 AQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLFGSSFFAIKRNGDQQ----ILALNK 447
+++Q + Q A L+ ++ + EILS F F + +
Sbjct: 188 KTLRKLIQQTFRQFANLNREESILKFFEILSPVYRFDKECFKCALGSSWIISVELAIGPE 247
Query: 448 HGVHFLNLLTHETISSVPYGDV--ISTRKVRAESGTLYLEMKCGNLFQQRVARIQT-DQA 504
G+ +L + V I + L++K + + A
Sbjct: 248 EGISYLTDKGANPTHLADFNQVQTIQYSNSEDKDRKGMLQLKIAGAPEPLTVTAPSLTIA 307
Query: 505 HEIARLIRQYMSLDRQKN 522
+A LI Y L
Sbjct: 308 ENMADLIDGYCRLVNGAT 325
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.0 bits (150), Expect = 3e-10
Identities = 78/495 (15%), Positives = 148/495 (29%), Gaps = 141/495 (28%)
Query: 49 SSSDWTWREQL-DLVKFTCVPISEPLLKL---EPPLAEIAVECFECIMRFMGDLPTTPDL 104
++ + QL + +F + + EP + P E + +F+G + + +
Sbjct: 23 PTASFFIASQLQE--QFNKI-LPEPTEGFAADDEPTTPA-----ELVGKFLGYVSSLVEP 74
Query: 105 TEVKCVYTILMHCHTH-EP--LR-DEVYCQLMKQTTSNKTESCQRGWRLLSIVAAYFT-C 159
++V +L C T E L ++++ K N T + ++ Y T
Sbjct: 75 SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK----ELIKNYITAR 130
Query: 160 SDTLRPF-------LLKYLETAAYDKRRAFH------GTASVCLQNLRKT-LRYGGRKNV 205
RPF L + A + G + LR Y
Sbjct: 131 IMAKRPFDKKSNSALFR----AVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYH----- 181
Query: 206 PSVEEVTAVSAGRNSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEM--- 262
V ++ SA L L ++T E + + ++ +
Sbjct: 182 VLVGDLIKFSAET-----LSEL---------IRTTLDAEKVFTQGLNILEWLENPSNTPD 227
Query: 263 EEFSLYCIVEGDAFTMPLAKEEYILDVTTELHKNQQVFYLIFCRSVWYFPLRLDCQLYVQ 322
+++ L + PL + V Q Y++ + + + P L
Sbjct: 228 KDYLLSI-----PISCPL------IGVI------QLAHYVVTAKLLGFTPGELR------ 264
Query: 323 VLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRAADMSHPPAMKETKFLLPKP 382
YL+G Q +V A+ D F
Sbjct: 265 --------SYLKGATGHS------QGLV------TAVAIAETD-------SWESFF---- 293
Query: 383 ALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAK--AQLLEILSKWPLFGSSFFAIKRNGDQ 440
++ I ++ V+ + + P S+ LE P S +I +
Sbjct: 294 VSVRKAITVLFFIG-VRCY--EAYPNTSLPPSILEDSLENNEGVP---SPMLSISNLTQE 347
Query: 441 Q----ILALNKHG-----VHF--LNLLTHETISSVP---YGDVISTRKVRAESGTLYLEM 486
Q + N H V +N + +S P YG ++ RK +A SG L+
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSG---LD- 403
Query: 487 KCGNLFQQRVARIQT 501
+ F +R +
Sbjct: 404 QSRIPFSERKLKFSN 418
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A
{Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB:
1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A
2zpy_A 1gc7_A 1gc6_A 1ni2_A
Length = 294
Score = 56.5 bits (136), Expect = 6e-09
Identities = 40/240 (16%), Positives = 89/240 (37%), Gaps = 32/240 (13%)
Query: 232 ETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSL-YCIVEGDAFTMPLAKEEYILDVT 290
E I +T + + ++ + I + E+ F L Y +G + + L K+ VT
Sbjct: 14 EFAIQPNTT--GKQLFDQVVKTIGL---REVWFFGLQYQDTKGFSTWLKLNKK-----VT 63
Query: 291 TELHKNQQVFYLIFCRSVWYFP----LRLDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIP 346
+ + + +F ++P L + ++ F Q+ L + P
Sbjct: 64 AQDVRKESPL--LFKFRAKFYPEDVSEELIQDITQRLFFLQVKEGILNDDIYCPPET--- 118
Query: 347 QDIVYDVAKLAALLHRAADMSHPPAMKETKFL-----LPKPALTQRDIKPAQWVQMVQSH 401
LA+ ++ + ++ +L LP+ L Q + QW + +Q
Sbjct: 119 ------AVLLASYAVQSKYGDFNKEVHKSGYLAGDKLLPQRVLEQHKLNKDQWEERIQVW 172
Query: 402 WTQTAPLHSIQAKAQLLEILSKWPLFGSSFFAIKRNGDQQI-LALNKHGVHFLNLLTHET 460
+ + A + L+I ++G ++F+IK ++ L ++ G++ T
Sbjct: 173 HEEHRGMLREDAVLEYLKIAQDLEMYGVNYFSIKNKKGSELWLGVDALGLNIYEQNDRLT 232
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin
binding, masking, regulation, SELF-inhibition, cell A
membrane protein; 2.10A {Spodoptera frugiperda} PDB:
2i1k_A 1e5w_A
Length = 575
Score = 48.8 bits (115), Expect = 3e-06
Identities = 40/237 (16%), Positives = 87/237 (36%), Gaps = 31/237 (13%)
Query: 226 RLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCI-VEGDAFTMPLAKEE 284
++TT + + ++ + I + E+ F L +GD + L K+
Sbjct: 10 TTMDAELEFAIQQTTTG-KQLFDQVVKTIGL---REVWFFGLQYTDSKGDLTWIKLYKK- 64
Query: 285 YILDVTTELHKNQQVFYLIFCRSVWYFP----LRLDCQLYVQVLFNQIAPDYLEGLLLVL 340
V + K + F ++P L ++ +++ + Q+ L +
Sbjct: 65 ----VMQQDVKKENPLQFKFR--AKFYPEDVADELIQEITLKLFYLQVKNAILSDEIYCP 118
Query: 341 PNEQIPQDIVYDVAKLAALLHRAADMSHPPAMKETKFL-----LPKPALTQRDIKPAQWV 395
P LA+ +A H PA+ FL LP+ Q + +W
Sbjct: 119 PET---------SVLLASYAVQARHGDHNPAVHGPGFLANDRLLPQRVTDQHKMSREEWE 169
Query: 396 QMVQSHWTQTAPLHSIQAKAQLLEILSKWPLFGSSFFAIK-RNGDQQILALNKHGVH 451
Q + + W + + A + L+I ++G ++F I+ + + L ++ G++
Sbjct: 170 QSITNWWQEHRGMLREDAMMEYLKIAQDLEMYGVNYFEIRNKKNTELWLGVDALGLN 226
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.3 bits (114), Expect = 6e-06
Identities = 77/590 (13%), Positives = 160/590 (27%), Gaps = 179/590 (30%)
Query: 4 LYVLSFQIEDDGKHSLLQFAMHHFRQ-----FENLKTATGELTTGTGHKKSSSDWTWREQ 58
L + + + + +F R +KT + + T D + +
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 59 LDLVKFTCVPISEPLLKLEPPLAE------IAVE--------------C----FECIMRF 94
K+ V +P LKL L E + ++ C +C M F
Sbjct: 124 QVFAKYN-VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 95 ------MGDLPTTPDLTE--------VKCVYTILMHCHTHEPLR---------------- 124
+ + + + E + +T ++ LR
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 125 --------DEVY-----------CQ-LMKQTTSNKT-----ESCQRGWRLLSIVAAYFTC 159
V C+ L+ TT K + L + T
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILL--TTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 160 SDTLRPFLLKYLETAAYDKRRAFHGTA----SVC---LQNLRKTLRYGGRKNVPSVEEVT 212
+ LLKYL+ D R T S+ +++ T N + +
Sbjct: 301 DEVKS-LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 213 AVSAGR---NSKRQLYRLPGGSETVI---NTKSTTVVEDICIEMCQLINVNNDLEMEEFS 266
S R+++ + + T++ + + +I + + + +
Sbjct: 360 ESSLNVLEPAEYRKMFD-----RLSVFPPSAHIPTIL--LSLIWFDVIKSDVMVVVNKLH 412
Query: 267 LYCIVEGDAFTMPLAKEEYILDVT----------TELHKNQQVFYLIFCRSVWYFPLRLD 316
Y +VE + I + LH++ ++ Y +
Sbjct: 413 KYSLVEKQPKESTI----SIPSIYLELKVKLENEYALHRS-----IVDH----YNIPKTF 459
Query: 317 CQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLH-RAADMSHPPAMKET 375
+ + P YL+ I + H + + +
Sbjct: 460 DS-------DDLIPPYLDQY--------FYSHIGH---------HLKNIEHPERMTLFRM 495
Query: 376 KFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLFGSSFFAIK 435
FL D + +++ H TA A +L L + +
Sbjct: 496 VFL---------DFR---FLEQKIRH-DSTA----WNASGSILNTLQQLKFYKPYICDND 538
Query: 436 RNGDQQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLE 485
++ + A+ + FL + I S Y D++ + AE ++ E
Sbjct: 539 PKYERLVNAI----LDFLPKIEENLICS-KYTDLLR-IALMAEDEAIFEE 582
Score = 41.8 bits (97), Expect = 6e-04
Identities = 58/382 (15%), Positives = 111/382 (29%), Gaps = 123/382 (32%)
Query: 203 KNVPSVEEVTAVSAGRNSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEM 262
K++ S EE+ + +++ RL + +K +V+ + +++ +N M
Sbjct: 43 KSILSKEEIDHIIMSKDAVSGTLRLFW----TLLSKQEEMVQKF---VEEVLRINYKFLM 95
Query: 263 EEFSLYCIVEGDAFTMPLAKEEYILDVTTELHKNQQVF--YLIFCRSVWYFPLR-----L 315
P ++ L+ + QVF Y + R Y LR L
Sbjct: 96 SPIKTEQR-------QPSMMTRMYIEQRDRLYNDNQVFAKYNV-SRLQPYLKLRQALLEL 147
Query: 316 DCQLYV----------QVLFNQIAPDYLEGLLLVLP---------NEQIPQDIVYDVAKL 356
V + + Y + + N P+ + + L
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSY--KVQCKMDFKIFWLNLKNCNSPETV---LEML 202
Query: 357 AALLHRAADMSHPPAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQ 416
LL++ P T R S + L +A+
Sbjct: 203 QKLLYQI-----------------DPNWTSR------------SDHSSNIKLRIHSIQAE 233
Query: 417 LLEILSKWPLFGS--------------SFFAIKRNGDQQILAL--NKHGVHFLNLLTHET 460
L +L P +F N +IL K FL+ T
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAF-----NLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 461 ISSVPYGDVISTRKVRAESGTL---YLEMKCGNLFQQRVARIQTDQAHE-----IARLIR 512
IS + ++ E +L YL+ + +L + + IA IR
Sbjct: 289 ISLDHHSMTLTPD----EVKSLLLKYLDCRPQDL------PREVLTTNPRRLSIIAESIR 338
Query: 513 ---------QYMSLDRQKNVIQ 525
++++ D+ +I+
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIE 360
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics
conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A
2he7_A 2rq1_A
Length = 296
Score = 46.9 bits (111), Expect = 8e-06
Identities = 38/244 (15%), Positives = 73/244 (29%), Gaps = 29/244 (11%)
Query: 215 SAGRNSKRQLY----RLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSL-YC 269
S+GR + L + + +D+ +C+ +N+ LE + F L
Sbjct: 8 SSGRENLYFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNL---LEEDYFGLAIW 64
Query: 270 IVEGDAFTMPLAKEEYILDVTTELHKNQQVFYLIFCRSVWYF-PLRLDCQLYVQVLFNQI 328
+ AKE I + F + P +L + L Q+
Sbjct: 65 DNATSKTWLDSAKE--IKK-----QVRGVPWNFTFNVKFYPPDPAQLTEDITRYYLCLQL 117
Query: 329 APDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRAADMSHPPAMKETKFLLPKPALTQRD 388
D + G L +A L + ++ + P + ++ +
Sbjct: 118 RQDIVAGRLPCSFAT---------LALLGSYTIQSELGDYDPELHGVDYVSDFKLAPNQ- 167
Query: 389 IKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLFGSSFFAIK-RNGDQQILALNK 447
+ + V + QA + LE K ++G K G IL +
Sbjct: 168 --TKELEEKVMELHKSYRSMTPAQADLEFLENAKKLSMYGVDLHKAKDLEGVDIILGVCS 225
Query: 448 HGVH 451
G+
Sbjct: 226 SGLL 229
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase,
integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB:
2j0k_A*
Length = 656
Score = 34.4 bits (79), Expect = 0.096
Identities = 30/175 (17%), Positives = 64/175 (36%), Gaps = 27/175 (15%)
Query: 279 PLAKEEYILDVTTELHKNQQVFYLIFCRSVWYFPLRLDC------QLYVQ------VLFN 326
++E + L + + ++ F L W + LR+ + + +
Sbjct: 60 LQSEEVHWLHLDMGVSNVREKFELAHPPEEWKYELRIRYLPKGFLNQFTEDKPTLNFFYQ 119
Query: 327 QIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRAADMSHPPAMKETKF-LLPK---- 381
Q+ DY+ + +Q+ Q+I + L + +M K++ + +L K
Sbjct: 120 QVKNDYMLEI-----ADQVDQEIALKLGCLE-IRRSYGEMRGNALEKKSNYEVLEKDVGL 173
Query: 382 ----PALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLFGSSFF 432
P +K +++Q + Q A L+ ++ + EILS F F
Sbjct: 174 RRFFPKSLLDSVKAKTLRKLIQQTFRQFANLNREESILKFFEILSPVYRFDKECF 228
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 31.8 bits (72), Expect = 0.73
Identities = 11/91 (12%), Positives = 22/91 (24%), Gaps = 23/91 (25%)
Query: 401 HWTQTAP-----------LHSIQAKAQLLEILSKWPLFGSSFFAIKRNGDQQILALNKHG 449
+ AP S++ + L + + + IK + ++ AL
Sbjct: 1216 GRSVPAPGKGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEA 1275
Query: 450 VHFLNLLTHETISSVPYGDVISTRKVRAESG 480
+P D R
Sbjct: 1276 ------------EEIPSEDQNEFLLERTREI 1294
>3f70_A Lethal(3)malignant brain tumor-like 2 protein; MBT, chromatin
regulator, metal-binding, nucleus, transcript
transcription regulation, zinc-finger; HET: MLZ; 2.10A
{Homo sapiens} PDB: 3dbb_A* 3cey_A
Length = 456
Score = 28.1 bits (62), Expect = 8.6
Identities = 11/74 (14%), Positives = 22/74 (29%), Gaps = 4/74 (5%)
Query: 44 TGHKKSSSDWTWREQLDLVKFTCVPISEPLLKLEPPLAEIAVECFECIMRFMGDLPTTPD 103
TG + W + L + P+S K P + E M+
Sbjct: 1 TGQDALVLGFDWGKFLKDHSYKAAPVS--CFKHVPLYDQ--WEDVMKGMKVEVLNSDAVL 56
Query: 104 LTEVKCVYTILMHC 117
+ V + +++
Sbjct: 57 PSRVYWIASVIQTA 70
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.136 0.411
Gapped
Lambda K H
0.267 0.0622 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,864,656
Number of extensions: 454886
Number of successful extensions: 847
Number of sequences better than 10.0: 1
Number of HSP's gapped: 812
Number of HSP's successfully gapped: 24
Length of query: 525
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 427
Effective length of database: 3,965,535
Effective search space: 1693283445
Effective search space used: 1693283445
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.1 bits)