RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8450
(525 letters)
>d1mixa2 b.55.1.5 (A:309-400) Talin {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 92
Score = 61.4 bits (149), Expect = 1e-12
Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 12/96 (12%)
Query: 428 GSSFFAIKR------NGDQQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGT 481
G SFF +K ++L + K V ++ T E I ++ ++ A +
Sbjct: 1 GVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNI---KRWAASPKS 57
Query: 482 LYLEMKCGNLFQQRVARIQTDQAHEIARLIRQYMSL 517
L+ G+ + +QT + +IA+LI Y+ +
Sbjct: 58 FTLDF--GDYQDGYYS-VQTTEGEQIAQLIAGYIDI 90
>d2al6a1 a.11.2.1 (A:131-253) Focal adhesion kinase 1 {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 123
Score = 43.9 bits (103), Expect = 3e-06
Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 3/107 (2%)
Query: 324 LFNQIAPDYLEGLLLVLPNEQIPQ-DIVYDVAKLAALLHRAADMSHPPAMKETKFLLPK- 381
+ Q+ DY+ + + E + + + A + + E L +
Sbjct: 17 FYQQVKNDYMLEIADQVDQEIALKLGCLEIRRSYGEMRGNALEKKSNYEVLEKDVGLRRF 76
Query: 382 -PALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLF 427
P +K +++Q + Q A L+ ++ + EILS F
Sbjct: 77 FPKSLLDSVKAKTLRKLIQQTFRQFANLNREESILKFFEILSPVYRF 123
>d1mixa1 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 114
Score = 43.0 bits (101), Expect = 8e-06
Identities = 17/110 (15%), Positives = 37/110 (33%), Gaps = 10/110 (9%)
Query: 318 QLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRAADMSHPPAMKETKF 377
+ + +L+ Q D L G V ++ + A + H + F
Sbjct: 15 PVQLNLLYVQARDDILNGSHPVSFDK---------ACEFAGYQCQIQFGPHNEQKHKPGF 65
Query: 378 LLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLF 427
L K L + IK + + + + I+AK + +++ +
Sbjct: 66 LELKDFLPKEYIKQ-KGERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTY 114
>d1ef1a1 a.11.2.1 (A:88-198) Moesin {Human (Homo sapiens) [TaxId:
9606]}
Length = 111
Score = 34.5 bits (79), Expect = 0.005
Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 14/105 (13%)
Query: 324 LFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALL--HRAADMS---HPPAMKETKFL 378
F Q+ L + P LA+ + D + H L
Sbjct: 15 FFLQVKEGILNDDIYCPPET---------AVLLASYAVQSKYGDFNKEVHKSGYLAGDKL 65
Query: 379 LPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSK 423
LP+ L Q + QW + +Q + + A + L+I
Sbjct: 66 LPQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKIAQD 110
>d1wgra_ d.15.1.5 (A:) Growth factor receptor-bound protein 7, GRB-7
{Human (Homo sapiens) [TaxId: 9606]}
Length = 100
Score = 34.1 bits (78), Expect = 0.007
Identities = 16/101 (15%), Positives = 35/101 (34%), Gaps = 5/101 (4%)
Query: 212 TAVSAGRNSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIV 271
++ S+GR ++Y G+ + + +C + Q + +D E + L
Sbjct: 2 SSGSSGRPHVVKVY-SEDGACRSVEVAAGATARHVCEMLVQRAHALSD---ETWGLVECH 57
Query: 272 EGDAFTMPLAKEEYILDVTTELHKNQQVFYLIFCRSVWYFP 312
A L E +++V +F ++ P
Sbjct: 58 PHLALERGLEDHESVVEVQAAWPVGGD-SRFVFRKNFASGP 97
>d1h4ra1 a.11.2.1 (A:104-214) Merlin {Human (Homo sapiens) [TaxId:
9606]}
Length = 111
Score = 31.4 bits (71), Expect = 0.076
Identities = 17/105 (16%), Positives = 34/105 (32%), Gaps = 14/105 (13%)
Query: 324 LFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRAA-----DMSHPPAMKETKFL 378
F Q+ L+ + P LA+ +A H + L
Sbjct: 15 FFLQVKKQILDEKIYCPPEA---------SVLLASYAVQAKYGDYDPSVHKRGFLAQEEL 65
Query: 379 LPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSK 423
LPK + + P W + + + + + +A+ + L+I
Sbjct: 66 LPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQD 110
>d1gg3a1 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1R {Human
(Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 26.4 bits (58), Expect = 3.3
Identities = 14/104 (13%), Positives = 31/104 (29%), Gaps = 12/104 (11%)
Query: 324 LFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRAADMSHPPAMKETKFLLPKPA 383
L Q+ D + G L +A L + ++ + P + ++
Sbjct: 15 LCLQLRQDIVAGRLPCSFAT---------LALLGSYTIQSELGDYDPELHGVDYVSDFKL 65
Query: 384 LTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLF 427
+ + + V + QA + LE K ++
Sbjct: 66 APNQ---TKELEEKVMELHKSYRSMTPAQADLEFLENAKKLSMY 106
>d1c1yb_ d.15.1.5 (B:) c-Raf1 RBD {Human (Homo sapiens) [TaxId:
9606]}
Length = 77
Score = 25.5 bits (56), Expect = 4.6
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 227 LPGGSETVINTKSTTVVEDICIEMCQLINVN 257
LP TV+N ++ + D ++ ++ +
Sbjct: 8 LPNKQRTVVNVRNGMSLHDCLMKALKVRGLQ 38
>d3e11a1 d.92.1.17 (A:1-113) Uncharacterized protein Acel_2062
{Acidothermus cellulolyticus [TaxId: 28049]}
Length = 113
Score = 25.8 bits (57), Expect = 6.9
Identities = 19/79 (24%), Positives = 23/79 (29%), Gaps = 19/79 (24%)
Query: 55 WREQLDLVKFTC--VPISEPLLKLE--PPLAEIAVECFECIMRFMGDLPTTPDLTEVKCV 110
+ + V P LL L PL E R PD +
Sbjct: 24 FARAMRNVAVFVEDEPDDPELLGLYVGIPLTE----------RTTAYGGVLPD---RIII 70
Query: 111 Y--TILMHCHTHEPLRDEV 127
Y TI C T + DEV
Sbjct: 71 YRNTICALCETESEVIDEV 89
>d1wxma1 d.15.1.5 (A:8-80) A-Raf proto-oncogene
serine/threonine-protein kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 73
Score = 25.0 bits (55), Expect = 7.1
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 227 LPGGSETVINTKSTTVVEDICIEMCQLINVN 257
LP TV+ + V D + ++ +N
Sbjct: 7 LPNKQRTVVTVRDGMSVYDSLDKALKVRGLN 37
>d1hg4a_ a.123.1.1 (A:) Ultraspiracle protein, usp {Drosophila
melanogaster [TaxId: 7227]}
Length = 265
Score = 26.6 bits (58), Expect = 7.4
Identities = 23/147 (15%), Positives = 40/147 (27%), Gaps = 11/147 (7%)
Query: 15 GKHSLLQFAMHHFRQFENLKTATGELTTGTGHKKSSSDWTWREQLDLVKFTCVPISEPLL 74
LL + G G GH S + Q +
Sbjct: 80 AWIELLIANVAWCSIVSLDDGGAGGGGGGLGHDGSFERRSPGLQPQQLFLNQSFSYHRNS 139
Query: 75 KLEPPLAEIAVECFECIMRFMGDLPTTPDLTEVKCVYTILMHCHTH---------EPLRD 125
++ ++ I + M L D E+ C+ I+++ E R+
Sbjct: 140 AIKAGVSAIFDRILSELSVKMKRL--NLDRRELSCLKAIILYNPDIRGIKSRAEIEMCRE 197
Query: 126 EVYCQLMKQTTSNKTESCQRGWRLLSI 152
+VY L + R +LL
Sbjct: 198 KVYACLDEHCRLEHPGDDGRFAQLLLR 224
>d2zkmx4 c.1.18.1 (X:312-660) Phospholipase C-beta-2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 349
Score = 26.6 bits (58), Expect = 8.8
Identities = 6/45 (13%), Positives = 12/45 (26%), Gaps = 5/45 (11%)
Query: 458 HETISSVPYGDVISTRKVRAESGT-----LYLEMKCGNLFQQRVA 497
+ + + + I A + L E + QQ
Sbjct: 65 FTMTTDIFFKEAIEAIAESAFKTSPYPIILSFENHVDSPRQQAKM 109
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.136 0.411
Gapped
Lambda K H
0.267 0.0708 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,915,196
Number of extensions: 86418
Number of successful extensions: 204
Number of sequences better than 10.0: 1
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 20
Length of query: 525
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 436
Effective length of database: 1,185,626
Effective search space: 516932936
Effective search space used: 516932936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.0 bits)