BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8451
(110 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GEJ|A Chain A, N-terminal Domain Of Vdup-1
pdb|4GEJ|B Chain B, N-terminal Domain Of Vdup-1
pdb|4GEJ|C Chain C, N-terminal Domain Of Vdup-1
pdb|4GEJ|D Chain D, N-terminal Domain Of Vdup-1
pdb|4GEJ|E Chain E, N-terminal Domain Of Vdup-1
pdb|4GEJ|F Chain F, N-terminal Domain Of Vdup-1
pdb|4GEJ|G Chain G, N-terminal Domain Of Vdup-1
pdb|4GEJ|H Chain H, N-terminal Domain Of Vdup-1
pdb|4GEJ|I Chain I, N-terminal Domain Of Vdup-1
pdb|4GEJ|J Chain J, N-terminal Domain Of Vdup-1
Length = 150
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 4 PQGSHVYPFSYTLPPT-IPSSFDGEHGRVRYKVTARLDRPWKFDKTTEAVFSVV 56
P + Y F + LP + +SF G++G V Y V A LDRP + + T+ F VV
Sbjct: 94 PGNKYEYKFGFELPQGPLGTSFKGKYGSVDYWVKAFLDRPSQPTQETKKNFEVV 147
>pdb|4GEI|A Chain A, N-terminal Domain Of Vdup-1
Length = 150
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 4 PQGSHVYPFSYTLPPT-IPSSFDGEHGRVRYKVTARLDRPWKFDKTTEAVFSVV 56
P + Y F + LP + +SF G++G V Y V A LDRP + + T+ F VV
Sbjct: 94 PGNKYEYKFGFELPQGPLGTSFKGKYGSVDYWVKAFLDRPSQPTQETKKNFEVV 147
>pdb|1JSY|A Chain A, Crystal Structure Of Bovine Arrestin-2
pdb|1ZSH|A Chain A, Crystal Structure Of Bovine Arrestin-2 In Complex With
Inositol Hexakisphosphate (Ip6)
pdb|2WTR|A Chain A, Full Length Arrestin2
Length = 418
Score = 30.0 bits (66), Expect = 0.33, Method: Composition-based stats.
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 6 GSHVYPFSYTLPPTIPSS 23
G H YPF++ +PP +P S
Sbjct: 109 GEHAYPFTFEIPPNLPCS 126
>pdb|2WTR|B Chain B, Full Length Arrestin2
Length = 418
Score = 30.0 bits (66), Expect = 0.33, Method: Composition-based stats.
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 6 GSHVYPFSYTLPPTIPSS 23
G H YPF++ +PP +P S
Sbjct: 109 GEHAYPFTFEIPPNLPCS 126
>pdb|1G4M|A Chain A, Crystal Structure Of Bovine Beta-Arrestin 1
pdb|1G4M|B Chain B, Crystal Structure Of Bovine Beta-Arrestin 1
pdb|1G4R|A Chain A, Crystal Structure Of Bovine Beta-Arrestin 1
pdb|3GD1|C Chain C, Structure Of An ArrestinCLATHRIN COMPLEX REVEALS A NOVEL
Clathrin Binding Domain That Modulates Receptor
Trafficking
pdb|3GD1|E Chain E, Structure Of An ArrestinCLATHRIN COMPLEX REVEALS A NOVEL
Clathrin Binding Domain That Modulates Receptor
Trafficking
Length = 393
Score = 30.0 bits (66), Expect = 0.36, Method: Composition-based stats.
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 6 GSHVYPFSYTLPPTIPSS 23
G H YPF++ +PP +P S
Sbjct: 109 GEHAYPFTFEIPPNLPCS 126
>pdb|3GC3|A Chain A, Crystal Structure Of Arrestin2s And Clathrin
Length = 385
Score = 30.0 bits (66), Expect = 0.38, Method: Composition-based stats.
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 6 GSHVYPFSYTLPPTIPSS 23
G H YPF++ +PP +P S
Sbjct: 109 GEHAYPFTFEIPPNLPCS 126
>pdb|1LMI|A Chain A, 1.5 Angstrom Resolution Crystal Structure Of A Secreted
Protein From Mycobacterium Tuberculosis-Mpt63
Length = 131
Score = 29.6 bits (65), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 43 WKFDKTTEAVFSVVTPYDLNTDMRAKEPINQNVSKNFRFLWRQSGPLTLS 92
W+ T A+ VTP + R + IN +R LW+ +GP T+S
Sbjct: 48 WEATATVNAIRGSVTPAVSQFNARTADGIN------YRVLWQAAGPDTIS 91
>pdb|2O1Z|A Chain A, Plasmodium Vivax Ribonucleotide Reductase Subunit R2
(Pv086155)
pdb|2O1Z|B Chain B, Plasmodium Vivax Ribonucleotide Reductase Subunit R2
(Pv086155)
Length = 311
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 43 WKFDKTTEAVFSVVTPYDLNTDMRAKEPINQN 74
W F K EA F DL++D++ E +N N
Sbjct: 51 WDFYKKAEASFWTAEEIDLSSDLKDFEKLNDN 82
>pdb|2P1I|A Chain A, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|B Chain B, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|C Chain C, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|D Chain D, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|E Chain E, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|F Chain F, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|G Chain G, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|H Chain H, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
Length = 349
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 43 WKFDKTTEAVFSVVTPYDLNTDMRAKEPINQN 74
W F K EA F DL++D++ E +N N
Sbjct: 52 WNFYKKAEASFWTAEEIDLSSDLKDFEKLNVN 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,493,384
Number of Sequences: 62578
Number of extensions: 126299
Number of successful extensions: 203
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 194
Number of HSP's gapped (non-prelim): 10
length of query: 110
length of database: 14,973,337
effective HSP length: 74
effective length of query: 36
effective length of database: 10,342,565
effective search space: 372332340
effective search space used: 372332340
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)