RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8451
(110 letters)
>gnl|CDD|215866 pfam00339, Arrestin_N, Arrestin (or S-antigen), N-terminal domain.
Ig-like beta-sandwich fold. Scop reports duplication
with C-terminal domain.
Length = 148
Score = 88.2 bits (219), Expect = 8e-24
Identities = 31/61 (50%), Positives = 42/61 (68%)
Query: 2 EIPQGSHVYPFSYTLPPTIPSSFDGEHGRVRYKVTARLDRPWKFDKTTEAVFSVVTPYDL 61
E+P G+H +PFS+ LPP P SF+G+ G +RY+V LDRPWK D + VF+V+ DL
Sbjct: 88 ELPAGTHAFPFSFELPPNCPPSFEGQPGGIRYEVKVELDRPWKKDHKRKKVFTVIRKLDL 147
Query: 62 N 62
N
Sbjct: 148 N 148
>gnl|CDD|193475 pfam13002, LDB19, Arrestin_N terminal like. This is a family of
proteins related to the Arrestin_N terminal family.
Length = 183
Score = 35.6 bits (82), Expect = 0.002
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 2 EIPQGSHVYPFSYTLPPTIPSSFDGEHGRVRYKVTA 37
++ GSH YPFSY P ++P+S +V+Y++ A
Sbjct: 40 DLSVGSHSYPFSYLFPGSLPASTSNSETQVKYELIA 75
>gnl|CDD|217215 pfam02752, Arrestin_C, Arrestin (or S-antigen), C-terminal domain.
Ig-like beta-sandwich fold. Scop reports duplication
with N-terminal domain.
Length = 136
Score = 35.0 bits (81), Expect = 0.002
Identities = 15/22 (68%), Positives = 19/22 (86%)
Query: 86 SGPLTLSVSAPFSGFVPGQTIP 107
SGP++LSVS P G+VPG+TIP
Sbjct: 2 SGPVSLSVSLPKKGYVPGETIP 23
>gnl|CDD|214976 smart01017, Arrestin_C, Arrestin (or S-antigen), C-terminal domain.
Ig-like beta-sandwich fold. Scop reports duplication
with N-terminal domain. Arrestins comprise a family of
closely-related proteins that includes beta-arrestin-1
and -2, which regulate the function of beta-adrenergic
receptors by binding to their phosphorylated forms,
impairing their capacity to activate G(S) proteins; Cone
photoreceptors C-arrestin (arrestin-X). which could bind
to phosphorylated red/green opsins; and Drosophila
phosrestins I and II, which undergo light-induced
phosphorylation, and probably play a role in
photoreceptor transduction.
Length = 142
Score = 34.2 bits (79), Expect = 0.005
Identities = 15/22 (68%), Positives = 18/22 (81%)
Query: 86 SGPLTLSVSAPFSGFVPGQTIP 107
SGPL+L VS P G+VPG+TIP
Sbjct: 2 SGPLSLEVSLPKKGYVPGETIP 23
Score = 26.9 bits (60), Expect = 1.9
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 4 PQGSHVYPFSYTLPPTIPSSFDGEHGRVRY--KVTARLDRPWK 44
P + +PP P+S +V Y KV RL
Sbjct: 85 PGNKDKFEGQLKVPPLPPTSRTCRLIKVEYKLKVKLRLSGKHS 127
>gnl|CDD|221734 pfam12722, Hid1, High-temperature-induced dauer-formation
protein. Hid1 (high-temperature-induced
dauer-formation protein 1) represents proteins of
approximately 800 residues long and is conserved from
fungi to humans. It contains up to seven potential
transmembrane domains separated by regions of low
complexity. Functionally it might be involved in
vesicle secretion or be an inter-cellular signalling
protein or be a novel insulin receptor.
Length = 813
Score = 28.9 bits (65), Expect = 0.48
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 43 WKFDKTTEAVFSVVTPYDL 61
W+ ++TE VFS++TP D+
Sbjct: 36 WELPESTEDVFSLITPADI 54
>gnl|CDD|151363 pfam10916, DUF2712, Protein of unknown function (DUF2712). This
family of proteins with unknown function appear to be
restricted to Bacillales.
Length = 146
Score = 28.1 bits (62), Expect = 0.64
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 10 YPFSYTLPPTIPSSFDGEHGRVRYKVTARLDRPWK--FDKTTEAVFSVVT 57
F + L P ++ + ++ T+ D PWK DK+ E ++ +
Sbjct: 35 IGFDFKLKPGCANAGSND----AFRETSHTDNPWKVNLDKSAEGKGTIAS 80
>gnl|CDD|219995 pfam08737, Rgp1, Rgp1. Rgp1 forms heterodimer with Ric1
(pfam07064) which associates with Golgi membranes and
functions as a guanyl-nucleotide exchange factor.
Length = 402
Score = 27.4 bits (61), Expect = 1.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 4 PQGSHVYPFSYTLPPTIPSSFDGEHGRVRYKVT 36
P S + F +TLP +P S+ G+ ++ YK+T
Sbjct: 106 PGESKTFHFKFTLPKDLPPSYRGKAIKISYKLT 138
>gnl|CDD|218155 pfam04575, DUF560, Protein of unknown function (DUF560). Family of
hypothetical bacterial proteins.
Length = 301
Score = 27.3 bits (61), Expect = 1.7
Identities = 22/94 (23%), Positives = 26/94 (27%), Gaps = 10/94 (10%)
Query: 12 FSYTLPPTIPSSFDGEHGRVRYKVTARLDRPWKFDKTT-------EAVFSVVTPYDLNTD 64
SY L P S E+ + RY LD F T + + D
Sbjct: 140 GSYWLSPKWQLSTALEYKQERYFERKHLDGNIHFVSLTLIYLPNPSQYWFGGLDF-YRED 198
Query: 65 MRAKEPINQNVSKNFRFLWRQSGPLTLSVSAPFS 98
R K K R W Q LS S
Sbjct: 199 TRDKADSYDR--KGVRLGWGQEWGGGLSTRLSAS 230
>gnl|CDD|190258 pfam02250, Orthopox_35kD, 35kD major secreted virus protein. This
family of orthopoxvirus secreted proteins (also known as
T1 and A41) interact with members of both the CC and CXC
superfamilies of chemokines. It has been suggested that
these secreted proteins modulate leukocyte influx into
virus-infected tissues.
Length = 226
Score = 26.4 bits (58), Expect = 2.9
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 5/36 (13%)
Query: 11 PFSYTLPPTIPSSFDGEHGRVRYKVTARL--DRPWK 44
PF +T P PS + GR Y RL PW+
Sbjct: 77 PFGFTGCPFNPSISEYSKGRYVY---VRLSSRAPWQ 109
>gnl|CDD|240315 PTZ00211, PTZ00211, ribonucleoside-diphosphate reductase small
subunit; Provisional.
Length = 330
Score = 25.9 bits (57), Expect = 5.8
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 43 WKFDKTTEAVFSVVTPYDLNTDMRAKEPINQN 74
W+ K EA F DL D++ E +N
Sbjct: 33 WRMYKKAEASFWTAEEIDLGNDLKDWEKLNDG 64
>gnl|CDD|219036 pfam06452, DUF1083, Domain of unknown function (DUF1083). This
family consists of several domains of unknown function
exclusively found in bacterial xylanase proteins
(usually at the C-terminus) although it is tandemly
repeated in a number of family members. This family is
always found in conjunction with pfam00331 and usually
with either pfam02018 or pfam00395. The function of
this family is unknown.
Length = 181
Score = 25.3 bits (56), Expect = 6.6
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 46 DKTTEAVFSVVTPYDLNTDMRAKEPINQNVSKNFRFLW 83
D +AV+S D + + P + S + LW
Sbjct: 2 DGKVDAVWSKAPWLDTDKLVTGTSPSAADASATAKALW 39
>gnl|CDD|187691 cd06266, RNase_HII, Ribonuclease H (RNase H) type II family
(prokaryotic RNase HII and HIII, and eukaryotic RNase
H2/HII). Ribonuclease H (RNase H) is classified into
two families, type I (prokaryotic RNase HI, eukaryotic
RNase H1 and viral RNase H) and type II (prokaryotic
RNase HII and HIII, and eukaryotic RNase H2/HII). RNase
H endonucleolytically hydrolyzes an RNA strand when it
is annealed to a complementary DNA strand in the
presence of divalent cations. The enzyme can be found
in bacteria, archaea, and eukaryotes. Most prokaryotic
and eukaryotic genomes contain multiple RNase H genes,
but no prokaryotic genome contains the combination of
only RNase HI and HIII. Despite a lack of evidence for
homology from sequence comparisons, type I and type II
RNase H share a common fold and similar steric
configurations of the four acidic active-site residues,
suggesting identical or very similar catalytic
mechanisms. It appears that type I and type II RNases H
also have overlapping functions in cells, as
over-expression of Escherichia coli RNase HII can
complement an RNase HI deletion phenotype in E. coli.
Length = 210
Score = 25.3 bits (56), Expect = 7.1
Identities = 6/25 (24%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 55 VVTPYDLNTDMRAKEPINQN-VSKN 78
+++P ++ M A+ N N +S +
Sbjct: 65 ILSPEYISRKMLARSKYNLNEISHD 89
>gnl|CDD|226776 COG4326, Spo0M, Sporulation control protein [General function
prediction only].
Length = 270
Score = 25.2 bits (55), Expect = 8.2
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 4 PQGSHVYPFSYTLPPTIPSSFDGEHGRVRYKVTARLDRPWKFDKTTEAVFSV 55
P +PF +LP P + G + V LD D T + + +V
Sbjct: 104 PGEERNFPFELSLPWNTPVTI----GDAKVWVETGLDIALAIDPTDKDILTV 151
>gnl|CDD|184450 PRK14012, PRK14012, cysteine desulfurase; Provisional.
Length = 404
Score = 25.3 bits (56), Expect = 9.5
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 34 KVTARLDRPWKFDKTTEAVFSVVTPYDLNTDMRAKEPINQNVSKNF 79
++ A DR W K E V+ LN D+ + P N NVS N+
Sbjct: 269 RIRALRDRLWNGIKDIEEVY-------LNGDLEQRVPGNLNVSFNY 307
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.432
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,541,586
Number of extensions: 442218
Number of successful extensions: 363
Number of sequences better than 10.0: 1
Number of HSP's gapped: 362
Number of HSP's successfully gapped: 20
Length of query: 110
Length of database: 10,937,602
Length adjustment: 74
Effective length of query: 36
Effective length of database: 7,655,406
Effective search space: 275594616
Effective search space used: 275594616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.2 bits)