RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8451
(110 letters)
>1g4m_A Beta-arrestin1; sensory transduction, alternative splicing,
signaling protein; 1.90A {Bos taurus} SCOP: b.1.18.11
b.1.18.11 PDB: 1g4r_A 3gd1_C 1jsy_A 1zsh_A* 2wtr_A
2wtr_B 3gc3_A 3p2d_A
Length = 393
Score = 68.6 bits (167), Expect = 3e-15
Identities = 23/110 (20%), Positives = 35/110 (31%), Gaps = 11/110 (10%)
Query: 6 GSHVYPFSYTLPPTIPSSFD--------GEHGRVRYKVTARLDRPWKFDKTTEAVFSVVT 57
G H YPF++ +PP +P S G+ V Y+V A + +V
Sbjct: 109 GEHAYPFTFEIPPNLPCSVTLQPGPEDTGKACGVDYEVKAFCAENLEEKIHKRNSVRLVI 168
Query: 58 PYDLNTDMRAKEPINQNVSKNFRFLWRQSGPLTLSVSAPFSGFVPGQTIP 107
R ++ F PL L S + G+ I
Sbjct: 169 RKVQYAPERPGPQPTAETTRQFLM---SDKPLHLEASLDKEIYYHGEPIS 215
>3ugu_A S-arrestin; arrestin fold, signal termination, GPCR, outer segment,
SIGN protein; 1.85A {Bos taurus} PDB: 3ugx_A 1cf1_A
1ayr_A
Length = 380
Score = 67.8 bits (165), Expect = 6e-15
Identities = 22/112 (19%), Positives = 36/112 (32%), Gaps = 10/112 (8%)
Query: 5 QGSHVYPFSYTLPPTIPSSF--------DGEHGRVRYKVTARL-DRPWKFDKTTEAVFSV 55
G++ YPF T P +P S G+ V +++ A + SV
Sbjct: 121 LGANTYPFLLTFPDYLPCSVMLQPAPQDVGKSCGVDFEIKAFATHSTDVEEDKIPKKSSV 180
Query: 56 VTPYDLNTDMRAKEPINQNVSKNFRFLWRQSGPLTLSVSAPFSGFVPGQTIP 107
+++F PL L+VS + G+ IP
Sbjct: 181 RLLIRKVQHAPRDMGPQPRAEASWQFFMS-DKPLRLAVSLSKEIYYHGEPIP 231
>1suj_A CONE arrestin; sensory transduction, signaling protein; 2.38A
{Ambystoma tigrinum}
Length = 392
Score = 66.3 bits (161), Expect = 2e-14
Identities = 21/110 (19%), Positives = 34/110 (30%), Gaps = 11/110 (10%)
Query: 6 GSHVYPFSYTLPPTIPSSF--------DGEHGRVRYKVTARLDRPWKFDKTTEAVFSVVT 57
G+H YPF + + +P S G+ V ++V A + SV
Sbjct: 106 GAHAYPFCFKMGTNLPCSVTLQPGPDDTGKSCGVDFEVKAFCAENLEEK--IHKRNSVQL 163
Query: 58 PYDLNTDMRAKEPINQNVSKNFRFLWRQSGPLTLSVSAPFSGFVPGQTIP 107
A + +F+ PL L S + G+ I
Sbjct: 164 VIRKVQFAPANLGVAPKTEITRQFMLS-DRPLHLEASLDKEIYYHGEPIN 212
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 4e-04
Identities = 30/129 (23%), Positives = 47/129 (36%), Gaps = 46/129 (35%)
Query: 5 QGSHVYPFSYTLPPTI-PSSFDGEHGR------VR----YKVTARLDRPWKFDKTTEAVF 53
+ YP + +LPP+I S + G + +V +++ + V
Sbjct: 309 RCYEAYP-NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE 367
Query: 54 -S--------VVT--P---YDLNTDMR-AKEPINQNVSK--------NF--RFLWRQSGP 88
S VV+ P Y LN +R AK P + S+ F RFL P
Sbjct: 368 ISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL-----P 422
Query: 89 LTLSVSAPF 97
V++PF
Sbjct: 423 ----VASPF 427
Score = 27.3 bits (60), Expect = 1.1
Identities = 23/113 (20%), Positives = 34/113 (30%), Gaps = 35/113 (30%)
Query: 10 YPFSYTL-----PPTIPSSFDGEHG---RVRY---KVTARLDRPWKFDKTTEAVFSVVTP 58
Y FS P + F GE G R Y +D K +K + + T
Sbjct: 1657 YGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTS 1716
Query: 59 YDLNTDMRAKEPIN--QNVSKNFRFLWRQSGP--LTLSVSAPFS-----GFVP 102
Y ++ K ++ Q Q P + A F G +P
Sbjct: 1717 YTFRSE---KGLLSATQFT---------Q--PALTLMEK-AAFEDLKSKGLIP 1754
>2fau_A Vacuolar protein sorting 26; arrestin, retromer, protein transport;
HET: CAF; 2.10A {Homo sapiens}
Length = 341
Score = 35.0 bits (80), Expect = 0.002
Identities = 16/78 (20%), Positives = 23/78 (29%), Gaps = 4/78 (5%)
Query: 5 QGSHVYPFSYTLPPTIPSSFDGEHGRVRYKVTARLDRPWKFDKTTEAVFSVVTPYDLNTD 64
S Y F + S+ G + R+RY + + R D E V + L T
Sbjct: 104 TQSRSYDFEFMQVEKPYESYIGANVRLRYFLKVTIVRRLT-DLVKEYDLIV---HQLATY 159
Query: 65 MRAKEPINQNVSKNFRFL 82
I V
Sbjct: 160 PDVNNSIKMEVGIEDXLH 177
>2r51_A Vacuolar protein sorting-associated protein 26B; retromer,
fibronectin III, arrestin domain, membrane,
phosphorylation, protein transport; 2.10A {Mus musculus}
PDB: 3lh9_A 3lh8_A 3lha_A
Length = 340
Score = 33.9 bits (77), Expect = 0.006
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 5 QGSHVYPFSYTLPPTIPSSFDGEHGRVRYKVTARLDRPWKFDKTTEAVFSVVTP 58
S + F +T S+ G++ ++RY + A + R D E V T
Sbjct: 104 TQSQAFDFEFTHVEKPYESYTGQNVKLRYFLRATISRRLN-DVVKEMDIVVHTL 156
>3gnz_P 25 kDa protein elicitor; toxin, necrosi, ethyleneinducing,
immunityassociated responses, plants; 1.35A {Pythium
aphanidermatum} PDB: 3gnu_P
Length = 213
Score = 25.0 bits (54), Expect = 6.8
Identities = 15/78 (19%), Positives = 22/78 (28%), Gaps = 10/78 (12%)
Query: 18 PTIPSSFDGEHGRVRYKVTARLDRPWKFDKTTEAVFSVVTPYDLNTDMR----------A 67
P S DG ++ YK T LD F + ++ + R A
Sbjct: 136 PADKSYLDGITAKISYKSTWPLDHELGFTTSAGKQQPLIQWEQMTQAARDALESTDFGNA 195
Query: 68 KEPINQNVSKNFRFLWRQ 85
P N + Q
Sbjct: 196 NVPFKSNFQDKLVKAFFQ 213
>3ltq_A Interleukin-1 beta; lanthanide binding TAG, LBT, terbium, IL1B,
cytokine, inflam response, mitogen, pyrogen, secreted;
2.10A {Homo sapiens}
Length = 171
Score = 24.7 bits (53), Expect = 7.7
Identities = 7/36 (19%), Positives = 11/36 (30%)
Query: 64 DMRAKEPINQNVSKNFRFLWRQSGPLTLSVSAPFSG 99
+ K + + K F F + SA F
Sbjct: 102 SVDPKNYPKKKMEKRFVFNKIEINNKLEFESAQFPN 137
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET:
SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A*
3ssm_A*
Length = 419
Score = 24.5 bits (52), Expect = 9.4
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 6/57 (10%)
Query: 17 PPTIPSS----FDGEHG--RVRYKVTARLDRPWKFDKTTEAVFSVVTPYDLNTDMRA 67
PP+ + HG R R+ + D P + E ++ Y+L +R
Sbjct: 72 PPSNDTPVLVELAIVHGSERFRHFLRVVRDSPIRPVGADEGFVGMLVEYELTELLRE 128
>1ilt_A Interleukin-1 receptor antagonist; cytokine; 2.00A {Homo sapiens}
SCOP: b.42.1.2 PDB: 1ilr_1 1ira_X* 2irt_A 1irp_A
Length = 152
Score = 24.1 bits (52), Expect = 9.8
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 72 NQNVSKNFRFLWRQSGPLTLSVSAPFSG 99
N+ K F F+ SGP T SA G
Sbjct: 91 NRKQDKRFAFIRSDSGPTTSFESAACPG 118
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.432
Gapped
Lambda K H
0.267 0.0513 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,672,126
Number of extensions: 83776
Number of successful extensions: 158
Number of sequences better than 10.0: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 18
Length of query: 110
Length of database: 6,701,793
Length adjustment: 74
Effective length of query: 36
Effective length of database: 4,635,639
Effective search space: 166883004
Effective search space used: 166883004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.9 bits)