RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8451
         (110 letters)



>d1g4ma2 b.1.18.11 (A:176-393) Arrestin {Cow (Bos taurus),
           beta-arrestin 1 [TaxId: 9913]}
          Length = 218

 Score = 36.6 bits (84), Expect = 2e-04
 Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 3/36 (8%)

Query: 75  VSKNFRFLWRQSGPLTLSVSAPFSGFVPGQTIPCMI 110
            ++ F        PL L  S     +  G+ I   +
Sbjct: 11  TTRQFLM---SDKPLHLEASLDKEIYYHGEPISVNV 43


>d1cf1a2 b.1.18.11 (A:183-393) Arrestin {Cow (Bos taurus), visual
           arrestin [TaxId: 9913]}
          Length = 211

 Score = 36.1 bits (83), Expect = 3e-04
 Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 3/36 (8%)

Query: 75  VSKNFRFLWRQSGPLTLSVSAPFSGFVPGQTIPCMI 110
            S  F        PL L+VS     +  G+ IP  +
Sbjct: 10  ASWQFFM---SDKPLRLAVSLSKEIYYHGEPIPVTV 42


>d1g4ma1 b.1.18.11 (A:5-175) Arrestin {Cow (Bos taurus),
           beta-arrestin 1 [TaxId: 9913]}
          Length = 171

 Score = 27.0 bits (60), Expect = 0.39
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 6   GSHVYPFSYTLPPTIPSS 23
           G H YPF++ +PP +P S
Sbjct: 105 GEHAYPFTFEIPPNLPCS 122


>d1cf1a1 b.1.18.11 (A:10-182) Arrestin {Cow (Bos taurus), visual
           arrestin [TaxId: 9913]}
          Length = 173

 Score = 26.6 bits (59), Expect = 0.47
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 6   GSHVYPFSYTLPPTIPSS 23
           G++ YPF  T P  +P S
Sbjct: 103 GANTYPFLLTFPDYLPCS 120


>d1md6a_ b.42.1.2 (A:) Interleukin-1F5 {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 154

 Score = 23.6 bits (51), Expect = 6.5
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query: 71  INQNVSKNFRFLWRQSGPLTLSVSAPFSG 99
           +    SK+F F  R  G  +   SA + G
Sbjct: 89  LGAKESKSFTFYRRDMGLTSSFESAAYPG 117


>d1ilr1_ b.42.1.2 (1:) Interleukin-1 receptor antagonist protein
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 145

 Score = 23.2 bits (50), Expect = 7.4
 Identities = 11/30 (36%), Positives = 13/30 (43%)

Query: 70  PINQNVSKNFRFLWRQSGPLTLSVSAPFSG 99
             N+   K F F+   SGP T   SA   G
Sbjct: 82  SENRKQDKRFAFIRSDSGPTTSFESAACPG 111


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.432 

Gapped
Lambda     K      H
   0.267   0.0637    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 420,082
Number of extensions: 16949
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 10
Length of query: 110
Length of database: 2,407,596
Length adjustment: 69
Effective length of query: 41
Effective length of database: 1,460,226
Effective search space: 59869266
Effective search space used: 59869266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.1 bits)