BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8452
(166 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UKN7|MYO15_HUMAN Unconventional myosin-XV OS=Homo sapiens GN=MYO15A PE=1 SV=2
Length = 3530
Score = 64.3 bits (155), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 49/75 (65%)
Query: 90 FYLIFCRSVWYFPLRLDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAAL 149
+ L F R +W PL+ + +LYV + +NQ+ PDYL+GL +P + + ++ V+KLA+L
Sbjct: 3289 YMLWFRRVLWDQPLKFENELYVTMHYNQVLPDYLKGLFSSVPASRPSEQLLQQVSKLASL 3348
Query: 150 LHRAADMSHPPAMKE 164
HRA D + P+++E
Sbjct: 3349 QHRAKDHFYLPSVRE 3363
>sp|Q9QZZ4|MYO15_MOUSE Unconventional myosin-XV OS=Mus musculus GN=Myo15a PE=1 SV=2
Length = 3511
Score = 63.5 bits (153), Expect = 6e-10, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 90 FYLIFCRSVWYFPLRLDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAAL 149
+ L F R +W PL+ + +LYV + +NQ+ PDYL+GL +P Q + + V+KLA+L
Sbjct: 3270 YTLWFRRVLWDQPLKFENELYVTMHYNQVLPDYLKGLFSSVPARQPTEQQLQQVSKLASL 3329
Query: 150 LHRAADMSHPPAMKE 164
HRA D + P+++E
Sbjct: 3330 QHRAKDHFYLPSVRE 3344
>sp|B1LHG5|TSGA_ECOSM Protein TsgA OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=tsgA
PE=3 SV=1
Length = 393
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 13/149 (8%)
Query: 6 WVIIVSCIGRPTITIDVGSVVNDCPS-KHHFPRCFSQVFYLIFCRSVWYFPLRLDCQLYV 64
W + +CIG + I + + + P+ H P+ + V + V + + C +
Sbjct: 162 WYWVYACIGLVYVAIFILTFGCEFPALGKHAPKTDAPVAKEKWGIGVLFLSIAALCYILG 221
Query: 65 QVLFNQIAPDYLEGLIVHLN---TIFPVFYLIFCRSVWYFPLRL---DCQLYVQVLFNQI 118
Q+ F P+Y +GL + LN T+ F++ + +W F L D Q + VL
Sbjct: 222 QLGFISWVPEYAKGLGMSLNDAGTLVSNFWMSYMVGMWAFSFILRFFDLQRILTVLAG-- 279
Query: 119 APDYLEGLLLVLPNEQIPQDIVYDVAKLA 147
L +L+ + N P + + + L
Sbjct: 280 ----LAAILMYVFNTGTPAHMAWSILALG 304
>sp|B5YTS2|TSGA_ECO5E Protein TsgA OS=Escherichia coli O157:H7 (strain EC4115 / EHEC)
GN=tsgA PE=3 SV=1
Length = 393
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 13/149 (8%)
Query: 6 WVIIVSCIGRPTITIDVGSVVNDCPS-KHHFPRCFSQVFYLIFCRSVWYFPLRLDCQLYV 64
W + +CIG + I + + + P+ H P+ + V + V + + C +
Sbjct: 162 WYWVYACIGLVYVAIFILTFGCEFPALGKHAPKTDAPVAKEKWGIGVLFLSVAALCYILG 221
Query: 65 QVLFNQIAPDYLEGLIVHLN---TIFPVFYLIFCRSVWYFPLRL---DCQLYVQVLFNQI 118
Q+ F P+Y +GL + LN T+ F++ + +W F L D Q + VL
Sbjct: 222 QLGFISWVPEYAKGLGMSLNDAGTLVSNFWMSYMVGMWAFSFILRFFDLQRILTVLAG-- 279
Query: 119 APDYLEGLLLVLPNEQIPQDIVYDVAKLA 147
L +L+ + N P + + + L
Sbjct: 280 ----LAAILMYVFNTGTPAHMAWSILALG 304
>sp|Q8X4S4|TSGA_ECO57 Protein TsgA OS=Escherichia coli O157:H7 GN=tsgA PE=3 SV=1
Length = 393
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 13/149 (8%)
Query: 6 WVIIVSCIGRPTITIDVGSVVNDCPS-KHHFPRCFSQVFYLIFCRSVWYFPLRLDCQLYV 64
W + +CIG + I + + + P+ H P+ + V + V + + C +
Sbjct: 162 WYWVYACIGLVYVAIFILTFGCEFPALGKHAPKTDAPVAKEKWGIGVLFLSVAALCYILG 221
Query: 65 QVLFNQIAPDYLEGLIVHLN---TIFPVFYLIFCRSVWYFPLRL---DCQLYVQVLFNQI 118
Q+ F P+Y +GL + LN T+ F++ + +W F L D Q + VL
Sbjct: 222 QLGFISWVPEYAKGLGMSLNDAGTLVSNFWMSYMVGMWAFSFILRFFDLQRILTVLAG-- 279
Query: 119 APDYLEGLLLVLPNEQIPQDIVYDVAKLA 147
L +L+ + N P + + + L
Sbjct: 280 ----LAAILMYVFNTGTPAHMAWSILALG 304
>sp|Q32B02|TSGA_SHIDS Protein TsgA OS=Shigella dysenteriae serotype 1 (strain Sd197)
GN=tsgA PE=3 SV=1
Length = 393
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 13/149 (8%)
Query: 6 WVIIVSCIGRPTITIDVGSVVNDCPS-KHHFPRCFSQVFYLIFCRSVWYFPLRLDCQLYV 64
W + +CIG + I + + + P+ H P+ + V + V + + C +
Sbjct: 162 WYWVYACIGLVYVAIFILTFGCEFPALGKHAPKTDAPVAKEKWGIGVLFLSVAALCYILG 221
Query: 65 QVLFNQIAPDYLEGLIVHLN---TIFPVFYLIFCRSVWYFPLRL---DCQLYVQVLFNQI 118
Q+ F P+Y +GL + LN T+ F++ + +W F L D Q + VL
Sbjct: 222 QLGFISWVPEYAKGLGMSLNDAGTLVSNFWMSYMVGMWAFSFILRFFDLQRILTVLAG-- 279
Query: 119 APDYLEGLLLVLPNEQIPQDIVYDVAKLA 147
L +L+ + N P + + + L
Sbjct: 280 ----LAAILMYVFNTGTPAHMAWSILTLG 304
>sp|B7NDX4|TSGA_ECOLU Protein TsgA OS=Escherichia coli O17:K52:H18 (strain UMN026 /
ExPEC) GN=tsgA PE=3 SV=1
Length = 393
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 13/149 (8%)
Query: 6 WVIIVSCIGRPTITIDVGSVVNDCPS-KHHFPRCFSQVFYLIFCRSVWYFPLRLDCQLYV 64
W + +CIG + I + + + P+ H P+ + V + V + + C +
Sbjct: 162 WYWVYACIGLVYVAIFILTFGCEFPALGKHAPKTDAPVEKEKWGIGVLFLSIAALCYILG 221
Query: 65 QVLFNQIAPDYLEGLIVHLN---TIFPVFYLIFCRSVWYFPLRL---DCQLYVQVLFNQI 118
Q+ F P+Y +GL + LN T+ F++ + +W F L D Q + VL
Sbjct: 222 QLGFISWVPEYAKGLGMSLNDAGTLVSNFWMSYMVGMWAFSFILRFFDLQRILTVLAG-- 279
Query: 119 APDYLEGLLLVLPNEQIPQDIVYDVAKLA 147
L +L+ + N P + + + L
Sbjct: 280 ----LAAILMYVFNTGTPAHMAWSILALG 304
>sp|B7NMD3|TSGA_ECO7I Protein TsgA OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC)
GN=tsgA PE=3 SV=1
Length = 393
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 13/149 (8%)
Query: 6 WVIIVSCIGRPTITIDVGSVVNDCPS-KHHFPRCFSQVFYLIFCRSVWYFPLRLDCQLYV 64
W + +CIG + I + + + P+ H P+ + V + V + + C +
Sbjct: 162 WYWVYACIGLVYVAIFILTFGCEFPALGKHAPKTDAPVEKEKWGIGVLFLSIAALCYILG 221
Query: 65 QVLFNQIAPDYLEGLIVHLN---TIFPVFYLIFCRSVWYFPLRL---DCQLYVQVLFNQI 118
Q+ F P+Y +GL + LN T+ F++ + +W F L D Q + VL
Sbjct: 222 QLGFISWVPEYAKGLGMSLNDAGTLVSNFWMSYMVGMWAFSFILRFFDLQRILTVLAG-- 279
Query: 119 APDYLEGLLLVLPNEQIPQDIVYDVAKLA 147
L +L+ + N P + + + L
Sbjct: 280 ----LAAILMYVFNTGTPAHMAWSILALG 304
>sp|B2U3H0|TSGA_SHIB3 Protein TsgA OS=Shigella boydii serotype 18 (strain CDC 3083-94 /
BS512) GN=tsgA PE=3 SV=1
Length = 393
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 13/149 (8%)
Query: 6 WVIIVSCIGRPTITIDVGSVVNDCPS-KHHFPRCFSQVFYLIFCRSVWYFPLRLDCQLYV 64
W + +CIG + I + + + P+ H P+ + V + V + + C +
Sbjct: 162 WYWVYACIGLVYVAIFILTFGCEFPALGKHAPKTDAPVEKEKWGIGVLFLSVAALCYILG 221
Query: 65 QVLFNQIAPDYLEGLIVHLN---TIFPVFYLIFCRSVWYFPLRL---DCQLYVQVLFNQI 118
Q+ F P+Y +GL + LN T+ F++ + +W F L D Q + VL
Sbjct: 222 QLGFISWVPEYAKGLGMSLNDAGTLVSNFWMSYMVGMWAFSFILRFFDLQRILTVLAG-- 279
Query: 119 APDYLEGLLLVLPNEQIPQDIVYDVAKLA 147
L +L+ + N P + + + L
Sbjct: 280 ----LAAILMYVFNTGTPAHMAWSILALG 304
>sp|Q3YWQ7|TSGA_SHISS Protein TsgA OS=Shigella sonnei (strain Ss046) GN=tsgA PE=3 SV=1
Length = 393
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 13/149 (8%)
Query: 6 WVIIVSCIGRPTITIDVGSVVNDCPS-KHHFPRCFSQVFYLIFCRSVWYFPLRLDCQLYV 64
W + +CIG + I + + + P+ H P+ + V + V + + C +
Sbjct: 162 WYWVYACIGLVYVAIFILTFGCEFPALGKHAPKTDAPVEKEKWGIGVLFLSVAALCYILG 221
Query: 65 QVLFNQIAPDYLEGLIVHLN---TIFPVFYLIFCRSVWYFPLRL---DCQLYVQVLFNQI 118
Q+ F P+Y +GL + LN T+ F++ + +W F L D Q + VL
Sbjct: 222 QLGFISWVPEYAKGLGMSLNDAGTLVSNFWMSYMVGMWAFSFILRFFDLQRILTVLAG-- 279
Query: 119 APDYLEGLLLVLPNEQIPQDIVYDVAKLA 147
L +L+ + N P + + + L
Sbjct: 280 ----LAAILMYVFNTGTPAHMAWSILALG 304
>sp|Q31VS4|TSGA_SHIBS Protein TsgA OS=Shigella boydii serotype 4 (strain Sb227) GN=tsgA
PE=3 SV=1
Length = 393
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 13/149 (8%)
Query: 6 WVIIVSCIGRPTITIDVGSVVNDCPS-KHHFPRCFSQVFYLIFCRSVWYFPLRLDCQLYV 64
W + +CIG + I + + + P+ H P+ + V + V + + C +
Sbjct: 162 WYWVYACIGLVYVAIFILTFGCEFPALGKHAPKTDAPVEKEKWGIGVLFLSVAALCYILG 221
Query: 65 QVLFNQIAPDYLEGLIVHLN---TIFPVFYLIFCRSVWYFPLRL---DCQLYVQVLFNQI 118
Q+ F P+Y +GL + LN T+ F++ + +W F L D Q + VL
Sbjct: 222 QLGFISWVPEYAKGLGMSLNDAGTLVSNFWMSYMVGMWAFSFILRFFDLQRILTVLAG-- 279
Query: 119 APDYLEGLLLVLPNEQIPQDIVYDVAKLA 147
L +L+ + N P + + + L
Sbjct: 280 ----LAAILMYVFNTGTPAHMAWSILALG 304
>sp|B1IPA0|TSGA_ECOLC Protein TsgA OS=Escherichia coli (strain ATCC 8739 / DSM 1576 /
Crooks) GN=tsgA PE=3 SV=1
Length = 393
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 13/149 (8%)
Query: 6 WVIIVSCIGRPTITIDVGSVVNDCPS-KHHFPRCFSQVFYLIFCRSVWYFPLRLDCQLYV 64
W + +CIG + I + + + P+ H P+ + V + V + + C +
Sbjct: 162 WYWVYACIGLVYVAIFILTFGCEFPALGKHAPKTDAPVEKEKWGIGVLFLSVAALCYILG 221
Query: 65 QVLFNQIAPDYLEGLIVHLN---TIFPVFYLIFCRSVWYFPLRL---DCQLYVQVLFNQI 118
Q+ F P+Y +GL + LN T+ F++ + +W F L D Q + VL
Sbjct: 222 QLGFISWVPEYAKGLGMSLNDAGTLVSNFWMSYMVGMWAFSFILRFFDLQRILTVLAG-- 279
Query: 119 APDYLEGLLLVLPNEQIPQDIVYDVAKLA 147
L +L+ + N P + + + L
Sbjct: 280 ----LAAILMYVFNTGTPAHMAWSILALG 304
>sp|A8A5H1|TSGA_ECOHS Protein TsgA OS=Escherichia coli O9:H4 (strain HS) GN=tsgA PE=3
SV=1
Length = 393
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 13/149 (8%)
Query: 6 WVIIVSCIGRPTITIDVGSVVNDCPS-KHHFPRCFSQVFYLIFCRSVWYFPLRLDCQLYV 64
W + +CIG + I + + + P+ H P+ + V + V + + C +
Sbjct: 162 WYWVYACIGLVYVAIFILTFGCEFPALGKHAPKTDAPVEKEKWGIGVLFLSVAALCYILG 221
Query: 65 QVLFNQIAPDYLEGLIVHLN---TIFPVFYLIFCRSVWYFPLRL---DCQLYVQVLFNQI 118
Q+ F P+Y +GL + LN T+ F++ + +W F L D Q + VL
Sbjct: 222 QLGFISWVPEYAKGLGMSLNDAGTLVSNFWMSYMVGMWAFSFILRFFDLQRILTVLAG-- 279
Query: 119 APDYLEGLLLVLPNEQIPQDIVYDVAKLA 147
L +L+ + N P + + + L
Sbjct: 280 ----LAAILMYVFNTGTPAHMAWSILALG 304
>sp|Q1R5R8|TSGA_ECOUT Protein TsgA OS=Escherichia coli (strain UTI89 / UPEC) GN=tsgA PE=3
SV=1
Length = 393
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 13/149 (8%)
Query: 6 WVIIVSCIGRPTITIDVGSVVNDCPS-KHHFPRCFSQVFYLIFCRSVWYFPLRLDCQLYV 64
W + +CIG + I + + + P+ H P+ + V + V + + C +
Sbjct: 162 WYWVYACIGLVYVAIFILTFGCEFPALGKHAPKTDAPVEKEKWGIGVLFLSVAALCYILG 221
Query: 65 QVLFNQIAPDYLEGLIVHLN---TIFPVFYLIFCRSVWYFPLRL---DCQLYVQVLFNQI 118
Q+ F P+Y +GL + LN T+ F++ + +W F L D Q + VL
Sbjct: 222 QLGFISWVPEYAKGLGMSLNDAGTLVSNFWMSYMVGMWAFSFILRFFDLQRILTVLAG-- 279
Query: 119 APDYLEGLLLVLPNEQIPQDIVYDVAKLA 147
L +L+ + N P + + + L
Sbjct: 280 ----LAAILMYVFNTGTPAHMAWSILALG 304
>sp|B6I2S3|TSGA_ECOSE Protein TsgA OS=Escherichia coli (strain SE11) GN=tsgA PE=3 SV=1
Length = 393
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 13/149 (8%)
Query: 6 WVIIVSCIGRPTITIDVGSVVNDCPS-KHHFPRCFSQVFYLIFCRSVWYFPLRLDCQLYV 64
W + +CIG + I + + + P+ H P+ + V + V + + C +
Sbjct: 162 WYWVYACIGLVYVAIFILTFGCEFPALGKHAPKTDAPVEKEKWGIGVLFLSVAALCYILG 221
Query: 65 QVLFNQIAPDYLEGLIVHLN---TIFPVFYLIFCRSVWYFPLRL---DCQLYVQVLFNQI 118
Q+ F P+Y +GL + LN T+ F++ + +W F L D Q + VL
Sbjct: 222 QLGFISWVPEYAKGLGMSLNDAGTLVSNFWMSYMVGMWAFSFILRFFDLQRILTVLAG-- 279
Query: 119 APDYLEGLLLVLPNEQIPQDIVYDVAKLA 147
L +L+ + N P + + + L
Sbjct: 280 ----LAAILMYVFNTGTPAHMAWSILALG 304
>sp|P60778|TSGA_ECOLI Protein TsgA OS=Escherichia coli (strain K12) GN=tsgA PE=1 SV=1
Length = 393
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 13/149 (8%)
Query: 6 WVIIVSCIGRPTITIDVGSVVNDCPS-KHHFPRCFSQVFYLIFCRSVWYFPLRLDCQLYV 64
W + +CIG + I + + + P+ H P+ + V + V + + C +
Sbjct: 162 WYWVYACIGLVYVAIFILTFGCEFPALGKHAPKTDAPVEKEKWGIGVLFLSVAALCYILG 221
Query: 65 QVLFNQIAPDYLEGLIVHLN---TIFPVFYLIFCRSVWYFPLRL---DCQLYVQVLFNQI 118
Q+ F P+Y +GL + LN T+ F++ + +W F L D Q + VL
Sbjct: 222 QLGFISWVPEYAKGLGMSLNDAGTLVSNFWMSYMVGMWAFSFILRFFDLQRILTVLAG-- 279
Query: 119 APDYLEGLLLVLPNEQIPQDIVYDVAKLA 147
L +L+ + N P + + + L
Sbjct: 280 ----LAAILMYVFNTGTPAHMAWSILALG 304
>sp|P60779|TSGA_ECOL6 Protein TsgA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928
/ UPEC) GN=tsgA PE=3 SV=1
Length = 393
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 13/149 (8%)
Query: 6 WVIIVSCIGRPTITIDVGSVVNDCPS-KHHFPRCFSQVFYLIFCRSVWYFPLRLDCQLYV 64
W + +CIG + I + + + P+ H P+ + V + V + + C +
Sbjct: 162 WYWVYACIGLVYVAIFILTFGCEFPALGKHAPKTDAPVEKEKWGIGVLFLSVAALCYILG 221
Query: 65 QVLFNQIAPDYLEGLIVHLN---TIFPVFYLIFCRSVWYFPLRL---DCQLYVQVLFNQI 118
Q+ F P+Y +GL + LN T+ F++ + +W F L D Q + VL
Sbjct: 222 QLGFISWVPEYAKGLGMSLNDAGTLVSNFWMSYMVGMWAFSFILRFFDLQRILTVLAG-- 279
Query: 119 APDYLEGLLLVLPNEQIPQDIVYDVAKLA 147
L +L+ + N P + + + L
Sbjct: 280 ----LAAILMYVFNTGTPAHMAWSILALG 304
>sp|A1AGP8|TSGA_ECOK1 Protein TsgA OS=Escherichia coli O1:K1 / APEC GN=tsgA PE=3 SV=1
Length = 393
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 13/149 (8%)
Query: 6 WVIIVSCIGRPTITIDVGSVVNDCPS-KHHFPRCFSQVFYLIFCRSVWYFPLRLDCQLYV 64
W + +CIG + I + + + P+ H P+ + V + V + + C +
Sbjct: 162 WYWVYACIGLVYVAIFILTFGCEFPALGKHAPKTDAPVEKEKWGIGVLFLSVAALCYILG 221
Query: 65 QVLFNQIAPDYLEGLIVHLN---TIFPVFYLIFCRSVWYFPLRL---DCQLYVQVLFNQI 118
Q+ F P+Y +GL + LN T+ F++ + +W F L D Q + VL
Sbjct: 222 QLGFISWVPEYAKGLGMSLNDAGTLVSNFWMSYMVGMWAFSFILRFFDLQRILTVLAG-- 279
Query: 119 APDYLEGLLLVLPNEQIPQDIVYDVAKLA 147
L +L+ + N P + + + L
Sbjct: 280 ----LAAILMYVFNTGTPAHMAWSILALG 304
>sp|B1X712|TSGA_ECODH Protein TsgA OS=Escherichia coli (strain K12 / DH10B) GN=tsgA PE=3
SV=1
Length = 393
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 13/149 (8%)
Query: 6 WVIIVSCIGRPTITIDVGSVVNDCPS-KHHFPRCFSQVFYLIFCRSVWYFPLRLDCQLYV 64
W + +CIG + I + + + P+ H P+ + V + V + + C +
Sbjct: 162 WYWVYACIGLVYVAIFILTFGCEFPALGKHAPKTDAPVEKEKWGIGVLFLSVAALCYILG 221
Query: 65 QVLFNQIAPDYLEGLIVHLN---TIFPVFYLIFCRSVWYFPLRL---DCQLYVQVLFNQI 118
Q+ F P+Y +GL + LN T+ F++ + +W F L D Q + VL
Sbjct: 222 QLGFISWVPEYAKGLGMSLNDAGTLVSNFWMSYMVGMWAFSFILRFFDLQRILTVLAG-- 279
Query: 119 APDYLEGLLLVLPNEQIPQDIVYDVAKLA 147
L +L+ + N P + + + L
Sbjct: 280 ----LAAILMYVFNTGTPAHMAWSILALG 304
>sp|C4ZUM0|TSGA_ECOBW Protein TsgA OS=Escherichia coli (strain K12 / MC4100 / BW2952)
GN=tsgA PE=3 SV=1
Length = 393
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 13/149 (8%)
Query: 6 WVIIVSCIGRPTITIDVGSVVNDCPS-KHHFPRCFSQVFYLIFCRSVWYFPLRLDCQLYV 64
W + +CIG + I + + + P+ H P+ + V + V + + C +
Sbjct: 162 WYWVYACIGLVYVAIFILTFGCEFPALGKHAPKTDAPVEKEKWGIGVLFLSVAALCYILG 221
Query: 65 QVLFNQIAPDYLEGLIVHLN---TIFPVFYLIFCRSVWYFPLRL---DCQLYVQVLFNQI 118
Q+ F P+Y +GL + LN T+ F++ + +W F L D Q + VL
Sbjct: 222 QLGFISWVPEYAKGLGMSLNDAGTLVSNFWMSYMVGMWAFSFILRFFDLQRILTVLAG-- 279
Query: 119 APDYLEGLLLVLPNEQIPQDIVYDVAKLA 147
L +L+ + N P + + + L
Sbjct: 280 ----LAAILMYVFNTGTPAHMAWSILALG 304
>sp|B7M1R7|TSGA_ECO8A Protein TsgA OS=Escherichia coli O8 (strain IAI1) GN=tsgA PE=3 SV=1
Length = 393
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 13/149 (8%)
Query: 6 WVIIVSCIGRPTITIDVGSVVNDCPS-KHHFPRCFSQVFYLIFCRSVWYFPLRLDCQLYV 64
W + +CIG + I + + + P+ H P+ + V + V + + C +
Sbjct: 162 WYWVYACIGLVYVAIFILTFGCEFPALGKHAPKTDAPVEKEKWGIGVLFLSVAALCYILG 221
Query: 65 QVLFNQIAPDYLEGLIVHLN---TIFPVFYLIFCRSVWYFPLRL---DCQLYVQVLFNQI 118
Q+ F P+Y +GL + LN T+ F++ + +W F L D Q + VL
Sbjct: 222 QLGFISWVPEYAKGLGMSLNDAGTLVSNFWMSYMVGMWAFSFILRFFDLQRILTVLAG-- 279
Query: 119 APDYLEGLLLVLPNEQIPQDIVYDVAKLA 147
L +L+ + N P + + + L
Sbjct: 280 ----LAAILMYVFNTGTPAHMAWSILALG 304
>sp|B7L4N9|TSGA_ECO55 Protein TsgA OS=Escherichia coli (strain 55989 / EAEC) GN=tsgA PE=3
SV=1
Length = 393
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 13/149 (8%)
Query: 6 WVIIVSCIGRPTITIDVGSVVNDCPS-KHHFPRCFSQVFYLIFCRSVWYFPLRLDCQLYV 64
W + +CIG + I + + + P+ H P+ + V + V + + C +
Sbjct: 162 WYWVYACIGLVYVAIFILTFGCEFPALGKHAPKTDAPVEKEKWGIGVLFLSVAALCYILG 221
Query: 65 QVLFNQIAPDYLEGLIVHLN---TIFPVFYLIFCRSVWYFPLRL---DCQLYVQVLFNQI 118
Q+ F P+Y +GL + LN T+ F++ + +W F L D Q + VL
Sbjct: 222 QLGFISWVPEYAKGLGMSLNDAGTLVSNFWMSYMVGMWAFSFILRFFDLQRILTVLAG-- 279
Query: 119 APDYLEGLLLVLPNEQIPQDIVYDVAKLA 147
L +L+ + N P + + + L
Sbjct: 280 ----LAAILMYVFNTGTPAHMAWSILALG 304
>sp|B7MCY1|TSGA_ECO45 Protein TsgA OS=Escherichia coli O45:K1 (strain S88 / ExPEC)
GN=tsgA PE=3 SV=1
Length = 393
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 13/149 (8%)
Query: 6 WVIIVSCIGRPTITIDVGSVVNDCPS-KHHFPRCFSQVFYLIFCRSVWYFPLRLDCQLYV 64
W + +CIG + I + + + P+ H P+ + V + V + + C +
Sbjct: 162 WYWVYACIGLVYVAIFILTFGCEFPALGKHAPKTDAPVEKEKWGIGVLFLSVAALCYILG 221
Query: 65 QVLFNQIAPDYLEGLIVHLN---TIFPVFYLIFCRSVWYFPLRL---DCQLYVQVLFNQI 118
Q+ F P+Y +GL + LN T+ F++ + +W F L D Q + VL
Sbjct: 222 QLGFISWVPEYAKGLGMSLNDAGTLVSNFWMSYMVGMWAFSFILRFFDLQRILTVLAG-- 279
Query: 119 APDYLEGLLLVLPNEQIPQDIVYDVAKLA 147
L +L+ + N P + + + L
Sbjct: 280 ----LAAILMYVFNTGTPAHMAWSILALG 304
>sp|B7UK75|TSGA_ECO27 Protein TsgA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC)
GN=tsgA PE=3 SV=1
Length = 393
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 13/149 (8%)
Query: 6 WVIIVSCIGRPTITIDVGSVVNDCPS-KHHFPRCFSQVFYLIFCRSVWYFPLRLDCQLYV 64
W + +CIG + I + + + P+ H P+ + V + V + + C +
Sbjct: 162 WYWVYACIGLVYVAIFILTFGCEFPALGKHAPKTDAPVEKEKWGIGVLFLSVAALCYILG 221
Query: 65 QVLFNQIAPDYLEGLIVHLN---TIFPVFYLIFCRSVWYFPLRL---DCQLYVQVLFNQI 118
Q+ F P+Y +GL + LN T+ F++ + +W F L D Q + VL
Sbjct: 222 QLGFISWVPEYAKGLGMSLNDAGTLVSNFWMSYMVGMWAFSFILRFFDLQRILTVLAG-- 279
Query: 119 APDYLEGLLLVLPNEQIPQDIVYDVAKLA 147
L +L+ + N P + + + L
Sbjct: 280 ----LAAILMYVFNTGTPAHMAWSILALG 304
>sp|A7ZSN9|TSGA_ECO24 Protein TsgA OS=Escherichia coli O139:H28 (strain E24377A / ETEC)
GN=tsgA PE=3 SV=1
Length = 393
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 13/149 (8%)
Query: 6 WVIIVSCIGRPTITIDVGSVVNDCPS-KHHFPRCFSQVFYLIFCRSVWYFPLRLDCQLYV 64
W + +CIG + I + + + P+ H P+ + V + V + + C +
Sbjct: 162 WYWVYACIGLVYVAIFILTFGCEFPALGKHAPKTDAPVEKEKWGIGVLFLSVAALCYILG 221
Query: 65 QVLFNQIAPDYLEGLIVHLN---TIFPVFYLIFCRSVWYFPLRL---DCQLYVQVLFNQI 118
Q+ F P+Y +GL + LN T+ F++ + +W F L D Q + VL
Sbjct: 222 QLGFISWVPEYAKGLGMSLNDAGTLVSNFWMSYMVGMWAFSFILRFFDLQRILTVLAG-- 279
Query: 119 APDYLEGLLLVLPNEQIPQDIVYDVAKLA 147
L +L+ + N P + + + L
Sbjct: 280 ----LAAILMYVFNTGTPAHMAWSILALG 304
>sp|P58960|GR39B_DROME Putative gustatory receptor 39b OS=Drosophila melanogaster GN=Gr39b
PE=2 SV=1
Length = 369
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 44 YLIFCRSVWYFPLRLDCQLYVQV--LFNQIAPDYLEGLIVHLNTIFPVFYLIFCRSVWYF 101
Y FCR + Y LRL C+L + V L Q L I L T+ P Y+ S+ YF
Sbjct: 90 YFRFCREMKYLGLRLQCELKIHVGRLKWQSYAKILALGIGFLVTVLPSIYVALSGSLLYF 149
>sp|Q66647|HELI_EHV2 Probable ATP-dependent helicase 44 OS=Equine herpesvirus 2 (strain
86/87) GN=44 PE=3 SV=1
Length = 789
Score = 30.4 bits (67), Expect = 5.4, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 5 GWVIIVSCIGRPTITIDVGSVVNDCPSKHHFPRCFSQVFYLI 46
G V V C+G PT T + S N KHH C + + +L+
Sbjct: 224 GAVPCVVCVGSPTQTDAIQSTYNHSMQKHHIQECDNILTFLM 265
>sp|Q0TC96|TSGA_ECOL5 Protein TsgA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC)
GN=tsgA PE=3 SV=1
Length = 393
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 13/149 (8%)
Query: 6 WVIIVSCIGRPTITIDVGSVVNDCPS-KHHFPRCFSQVFYLIFCRSVWYFPLRLDCQLYV 64
W + +CIG + I + + + P+ H P+ + V + V + + C +
Sbjct: 162 WYWVYACIGLVYVAIFILTFGCEFPALGKHAPKTDAPVEKEKWGIGVLFLSVAALCYILG 221
Query: 65 QVLFNQIAPDYLEGLIVHLN---TIFPVFYLIFCRSVWYFPLRL---DCQLYVQVLFNQI 118
Q+ F P+Y +GL + LN T+ F++ + +W F L D Q + VL
Sbjct: 222 QLGFISWVPEYAKGLGMSLNDAGTLVSNFWMSYMVGMWAFSFILRFFDLQRILTVLAG-- 279
Query: 119 APDYLEGLLLVLPNEQIPQDIVYDVAKLA 147
L +L+ + N P + + + L
Sbjct: 280 ----LAAILMYVFNTGTPAYMAWSILALG 304
>sp|B7N1E7|TSGA_ECO81 Protein TsgA OS=Escherichia coli O81 (strain ED1a) GN=tsgA PE=3
SV=1
Length = 393
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 13/149 (8%)
Query: 6 WVIIVSCIGRPTITIDVGSVVNDCPS-KHHFPRCFSQVFYLIFCRSVWYFPLRLDCQLYV 64
W + +CIG + I + + + P+ H P+ + V + V + + C +
Sbjct: 162 WYWVYACIGLVYVAIFILTFGCEFPALGKHAPKTDAPVEKEKWGIGVLFLSVAALCYILG 221
Query: 65 QVLFNQIAPDYLEGLIVHLN---TIFPVFYLIFCRSVWYFPLRL---DCQLYVQVLFNQI 118
Q+ F P+Y +GL + LN T+ F++ + +W F L D Q + VL
Sbjct: 222 QLGFISWVPEYAKGLGMSLNDAGTLVSNFWMSYMVGMWAFSFILRFFDLQRILTVLAG-- 279
Query: 119 APDYLEGLLLVLPNEQIPQDIVYDVAKLA 147
L +L+ + N P + + + L
Sbjct: 280 ----LAAILMYVFNTGTPAYMAWSILALG 304
>sp|O74365|SOL1_SCHPO SWI/SNF chromatin-remodeling complex subunit sol1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sol1 PE=1 SV=1
Length = 865
Score = 30.0 bits (66), Expect = 7.8, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 99 WYFPLRLDCQLYVQVLFNQIAPDYLEGLLLVLPNEQI 135
W FPL +CQ V L + +A L+ LL VLPNE +
Sbjct: 461 WMFPLS-ECQDVVDALID-VATQCLDNLLSVLPNEDL 495
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.333 0.148 0.494
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,162,719
Number of Sequences: 539616
Number of extensions: 2285473
Number of successful extensions: 5468
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 5461
Number of HSP's gapped (non-prelim): 34
length of query: 166
length of database: 191,569,459
effective HSP length: 109
effective length of query: 57
effective length of database: 132,751,315
effective search space: 7566824955
effective search space used: 7566824955
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 56 (26.2 bits)