Query psy8452
Match_columns 166
No_of_seqs 108 out of 123
Neff 4.0
Searched_HMMs 46136
Date Fri Aug 16 19:14:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8452.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8452hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00295 B41 Band 4.1 homolo 97.4 0.00075 1.6E-08 52.6 7.8 123 8-158 6-137 (207)
2 PF00373 FERM_M: FERM central 97.4 0.0002 4.3E-09 52.2 4.1 49 102-159 2-50 (126)
3 KOG3530|consensus 49.2 32 0.0007 33.8 5.0 60 86-154 78-138 (616)
4 PRK14167 bifunctional 5,10-met 44.7 12 0.00025 33.3 1.3 48 8-56 207-266 (297)
5 PRK14168 bifunctional 5,10-met 43.0 11 0.00024 33.5 0.8 49 8-56 211-271 (297)
6 PF00373 FERM_M: FERM central 37.8 5.5 0.00012 28.7 -1.6 27 55-81 2-28 (126)
7 COG2251 Predicted nuclease (Re 26.3 6.3 0.00014 37.4 -3.5 72 55-127 291-370 (474)
8 PLN02616 tetrahydrofolate dehy 26.2 25 0.00055 32.3 0.4 47 8-55 277-336 (364)
9 PLN02516 methylenetetrahydrofo 24.4 50 0.0011 29.5 1.8 49 8-56 213-273 (299)
10 PRK14185 bifunctional 5,10-met 23.4 33 0.00072 30.5 0.6 48 8-56 207-267 (293)
11 PRK14181 bifunctional 5,10-met 22.6 35 0.00075 30.3 0.5 48 8-56 203-262 (287)
12 PF11417 Inhibitor_G39P: Loade 21.3 81 0.0018 22.4 2.1 25 141-166 45-69 (71)
13 PF08109 Antimicrobial14: Lact 21.1 29 0.00063 21.3 -0.2 15 115-129 5-19 (31)
14 PRK14186 bifunctional 5,10-met 21.0 53 0.0011 29.3 1.3 46 8-56 204-262 (297)
No 1
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=97.43 E-value=0.00075 Score=52.63 Aligned_cols=123 Identities=24% Similarity=0.139 Sum_probs=76.4
Q ss_pred EEEeecCCceEEEeccc-------eeccCCCCCCCCCccCCcEEEEEEeeeeccccccccccceeeecccChhhHhhhhh
Q psy8452 8 IIVSCIGRPTITIDVGS-------VVNDCPSKHHFPRCFSQVFYLIFCRSVWYFPLRLDCQLYVQVLFNQIAPDYLEGLI 80 (166)
Q Consensus 8 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~rR~~W~~pL~~dnelyv~~~y~q~~~dYL~dvL 80 (166)
+-|...+.-+.++.+++ +..+|...+.. ....|.|+... -+++.. +.+.+...+.+..
T Consensus 6 ~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~---~~~~F~L~~~~--------~~~~~~----~~l~~~~~l~~~~ 70 (207)
T smart00295 6 LKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIR---ESEYFGLQFED--------PDEDLS----HWLDPAKTLLDQD 70 (207)
T ss_pred EEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCC---ccceeEEEEEc--------CCCCcC----eeCCCccCHHHhc
Confidence 44556666666666653 23456667662 23668888733 222110 2222344555554
Q ss_pred hhcccCCCeEEEEeeehhhccc-ccc-CcchhHHHHHHHhhhhhhcccccccCCCCCchHHHHHHHHHHHHHHHhcCCCC
Q psy8452 81 VHLNTIFPVFYLIFCRSVWYFP-LRL-DCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRAADMSH 158 (166)
Q Consensus 81 ~~l~~~d~~~~L~~rRlvW~~P-L~f-Dn~lYv~~hYnQVLpDYL~G~Llv~~~~~~s~~~~~Qla~LAALQH~A~~~~~ 158 (166)
.. -.+..++|||-.|..+ ..+ +.+.-.+.+|.|+..|+++|++-... ++.+.||||+..+.-..+
T Consensus 71 ~~----~~~~~l~fr~r~~~~~~~~~~~d~~~~~~ly~Q~~~di~~g~~~~~~---------~~~~~Laal~~q~~~gd~ 137 (207)
T smart00295 71 VK----SEPLTLYFRVKFYPPDPLQLKEDPTRLNLLYLQVRNDILEGRLPCPE---------EEALLLAALALQAEFGDY 137 (207)
T ss_pred CC----CCCcEEEEEEEEccCCHHHhcchhHHHHHHHHHHHHHHHcCccCCCH---------HHHHHHHHHHHHHHhcCC
Confidence 32 1457899999888665 333 23344679999999999999995532 699999999888774333
No 2
>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 4DXA_B 2EMS_A 2ZPY_A 1J19_A 2D10_B 2D11_B 1GC6_A 2D2Q_A 2EMT_A 2YVC_A ....
Probab=97.42 E-value=0.0002 Score=52.15 Aligned_cols=49 Identities=33% Similarity=0.316 Sum_probs=41.9
Q ss_pred ccccCcchhHHHHHHHhhhhhhcccccccCCCCCchHHHHHHHHHHHHHHHhcCCCCC
Q psy8452 102 PLRLDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRAADMSHP 159 (166)
Q Consensus 102 PL~fDn~lYv~~hYnQVLpDYL~G~Llv~~~~~~s~~~~~Qla~LAALQH~A~~~~~~ 159 (166)
|++.+++..++.+|.|+..|+++|++.+.. ++.++||||+..+.-....
T Consensus 2 p~~~~d~~~~~lly~Q~~~~vl~g~~~~~~---------e~a~~LAAl~~q~~~gd~~ 50 (126)
T PF00373_consen 2 PLHIDDPITRHLLYLQARRDVLQGRLPCSE---------EDAIKLAALQLQAEYGDYN 50 (126)
T ss_dssp GGGTTSHHHHHHHHHHHHHHHHTTSSTS-H---------HHHHHHHHHHHHHHHTSST
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCcCCCCH---------HHHHHHHHHHHHHHhcCCC
Confidence 889999999999999999999999995533 7999999999999844433
No 3
>KOG3530|consensus
Probab=49.20 E-value=32 Score=33.79 Aligned_cols=60 Identities=27% Similarity=0.187 Sum_probs=44.3
Q ss_pred CCCeEEEEee-ehhhccccccCcchhHHHHHHHhhhhhhcccccccCCCCCchHHHHHHHHHHHHHHHhc
Q psy8452 86 IFPVFYLIFC-RSVWYFPLRLDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRAA 154 (166)
Q Consensus 86 ~d~~~~L~~r-RlvW~~PL~fDn~lYv~~hYnQVLpDYL~G~Llv~~~~~~s~~~~~Qla~LAALQH~A~ 154 (166)
.+.+|.|+|| |---.-|=++--++-=-+.|.|+-.|-|+|+|-.+- +..|.||||--.|.
T Consensus 78 ~gppytL~~rVKfY~sdP~~Lree~tRYqfflQlKqDll~GRL~Cp~---------~~AaeLaAl~lQsE 138 (616)
T KOG3530|consen 78 IGPPYTLHLRVKFYPSDPNNLREENTRYQFFLQLKQDLLSGRLYCPF---------ETAAELAALILQSE 138 (616)
T ss_pred cCCCeEEEEEEEeccCChhhhhchhhHHHHHHHHHHHHhcCCCCCch---------hhHHHHHHHHHHHH
Confidence 4668999998 444556666666665667999999999999998743 46678888765554
No 4
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.66 E-value=12 Score=33.35 Aligned_cols=48 Identities=25% Similarity=0.277 Sum_probs=31.1
Q ss_pred EEEeecCCce-----------EEEecc-ceeccCCCCCCCCCccCCcEEEEEEeeeecccc
Q psy8452 8 IIVSCIGRPT-----------ITIDVG-SVVNDCPSKHHFPRCFSQVFYLIFCRSVWYFPL 56 (166)
Q Consensus 8 ~~~~~~~~~~-----------~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~rR~~W~~pL 56 (166)
|+||++|+|- |-|||| +.++.+++++ ++-|-|-+|.--..+..|.+|-
T Consensus 207 IvIsAvGkp~~i~~~~ik~gaiVIDvGin~~~~~~~~g-~kl~GDVd~e~v~~~a~~iTPV 266 (297)
T PRK14167 207 IVVAAAGVPELIDGSMLSEGATVIDVGINRVDADTEKG-YELVGDVEFESAKEKASAITPV 266 (297)
T ss_pred EEEEccCCcCccCHHHcCCCCEEEEccccccCcccccC-CceeecCcHHHHHhhceEecCC
Confidence 6889999984 678998 3334444332 2456666666566677777774
No 5
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.00 E-value=11 Score=33.53 Aligned_cols=49 Identities=22% Similarity=0.147 Sum_probs=27.9
Q ss_pred EEEeecCCce-----------EEEeccce-eccCCCCCCCCCccCCcEEEEEEeeeecccc
Q psy8452 8 IIVSCIGRPT-----------ITIDVGSV-VNDCPSKHHFPRCFSQVFYLIFCRSVWYFPL 56 (166)
Q Consensus 8 ~~~~~~~~~~-----------~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~rR~~W~~pL 56 (166)
|+||++|+|- +-||||-- ++..++.+...-|-|-+|.--..+..|.+|-
T Consensus 211 IvVsAvGkp~~i~~~~ik~gavVIDvGin~~~~~~~~g~~~~~GDVdfe~v~~~a~~iTPV 271 (297)
T PRK14168 211 ILIVAAGVPNLVKPEWIKPGATVIDVGVNRVGTNESTGKAILSGDVDFDAVKEIAGKITPV 271 (297)
T ss_pred EEEEecCCcCccCHHHcCCCCEEEecCCCccCccccCCCcceeccccHHHHHhhccEecCC
Confidence 6889999984 56888832 2222233322245555555445556666663
No 6
>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 4DXA_B 2EMS_A 2ZPY_A 1J19_A 2D10_B 2D11_B 1GC6_A 2D2Q_A 2EMT_A 2YVC_A ....
Probab=37.76 E-value=5.5 Score=28.66 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=25.0
Q ss_pred ccccccccceeeecccChhhHhhhhhh
Q psy8452 55 PLRLDCQLYVQVLFNQIAPDYLEGLIV 81 (166)
Q Consensus 55 pL~~dnelyv~~~y~q~~~dYL~dvL~ 81 (166)
|++.+++..++++|.|..++++.|.+.
T Consensus 2 p~~~~d~~~~~lly~Q~~~~vl~g~~~ 28 (126)
T PF00373_consen 2 PLHIDDPITRHLLYLQARRDVLQGRLP 28 (126)
T ss_dssp GGGTTSHHHHHHHHHHHHHHHHTTSST
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCcCC
Confidence 889999999999999999999999863
No 7
>COG2251 Predicted nuclease (RecB family) [General function prediction only]
Probab=26.27 E-value=6.3 Score=37.41 Aligned_cols=72 Identities=22% Similarity=0.195 Sum_probs=49.7
Q ss_pred ccccccccceeee-cccChhhHhhhhhhhcccC--CCeEEEEee-----ehhhccccccCcchhHHHHHHHhhhhhhccc
Q psy8452 55 PLRLDCQLYVQVL-FNQIAPDYLEGLIVHLNTI--FPVFYLIFC-----RSVWYFPLRLDCQLYVQVLFNQIAPDYLEGL 126 (166)
Q Consensus 55 pL~~dnelyv~~~-y~q~~~dYL~dvL~~l~~~--d~~~~L~~r-----RlvW~~PL~fDn~lYv~~hYnQVLpDYL~G~ 126 (166)
|+ +..++|+++- +|+...||+.+++.+.++. ++-|.+|.+ |.+|.+=+.+----|.+++.+-+.|-=.+++
T Consensus 291 P~-~P~e~~fD~Ea~p~~n~Dy~l~~L~v~~~~~tg~f~~~~a~~~~ee~~~~~efl~~v~~~yp~~~~YH~~~ye~~~r 369 (474)
T COG2251 291 PL-FPVELYFDFEAEPLWNLDYLLGVLVVLEAARTGLFYPFWAEDPSEERKALQEFLGIVVRQYPEATIYHYAPYEKTRR 369 (474)
T ss_pred CC-CCccceeecccCcchhhccCCceEEEeeccccccchhhhhcCchHHHHHHHHHHhhhheecCCCCccccCchhhhch
Confidence 66 8899999999 9999999999999854443 334666666 4677776666655666666666544323244
Q ss_pred c
Q psy8452 127 L 127 (166)
Q Consensus 127 L 127 (166)
|
T Consensus 370 L 370 (474)
T COG2251 370 L 370 (474)
T ss_pred h
Confidence 4
No 8
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=26.19 E-value=25 Score=32.32 Aligned_cols=47 Identities=26% Similarity=0.372 Sum_probs=26.0
Q ss_pred EEEeecCCce-----------EEEeccc-eecc-CCCCCCCCCccCCcEEEEEEeeeeccc
Q psy8452 8 IIVSCIGRPT-----------ITIDVGS-VVND-CPSKHHFPRCFSQVFYLIFCRSVWYFP 55 (166)
Q Consensus 8 ~~~~~~~~~~-----------~~~~~~~-~~~~-~~~~~~~~~~~~~~~~l~~rR~~W~~p 55 (166)
|+|+++|+|- +-||||- .+++ +.+.+ .+-|-|-+|.--.....|.+|
T Consensus 277 IVIsAvGkp~~i~~d~vK~GAvVIDVGIn~~~~~~~~~g-~klvGDVdfe~v~~~as~ITP 336 (364)
T PLN02616 277 IIISAVGQPNMVRGSWIKPGAVVIDVGINPVEDASSPRG-YRLVGDVCYEEACKVASAVTP 336 (364)
T ss_pred EEEEcCCCcCcCCHHHcCCCCEEEeccccccccccccCC-CeEEecCcHHHHHhhccccCC
Confidence 6889999984 6688883 2222 22222 144555454444444555555
No 9
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=24.36 E-value=50 Score=29.48 Aligned_cols=49 Identities=22% Similarity=0.347 Sum_probs=30.3
Q ss_pred EEEeecCCc-----------eEEEecccee-ccCCCCCCCCCccCCcEEEEEEeeeecccc
Q psy8452 8 IIVSCIGRP-----------TITIDVGSVV-NDCPSKHHFPRCFSQVFYLIFCRSVWYFPL 56 (166)
Q Consensus 8 ~~~~~~~~~-----------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~rR~~W~~pL 56 (166)
|+|+++|+| .+-||||.-. ++.....-.+-|-|-+|.--..+..|.+|-
T Consensus 213 Ivv~AvGk~~~i~~~~vk~gavVIDvGin~~~~~~~~~g~kl~GDvd~e~v~~~a~~iTPV 273 (299)
T PLN02516 213 IVIAAAGQAMMIKGDWIKPGAAVIDVGTNAVSDPSKKSGYRLVGDVDFAEVSKVAGWITPV 273 (299)
T ss_pred EEEEcCCCcCccCHHHcCCCCEEEEeeccccCcccccCCCceEcCcChHHhhhhceEecCC
Confidence 688999997 4678888543 333222222566666665556667777774
No 10
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.41 E-value=33 Score=30.48 Aligned_cols=48 Identities=21% Similarity=0.362 Sum_probs=29.0
Q ss_pred EEEeecCCce-----------EEEecccee--ccCCCCCCCCCccCCcEEEEEEeeeecccc
Q psy8452 8 IIVSCIGRPT-----------ITIDVGSVV--NDCPSKHHFPRCFSQVFYLIFCRSVWYFPL 56 (166)
Q Consensus 8 ~~~~~~~~~~-----------~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~rR~~W~~pL 56 (166)
|+||++|+|- +-||||.-. +.+..++. +-|-|-+|.--..+..|.+|-
T Consensus 207 IvIsAvGkp~~i~~~~vk~gavVIDvGin~~~~~~~~~g~-klvGDVdf~~v~~~a~~iTPV 267 (293)
T PRK14185 207 IIIAALGQPEFVKADMVKEGAVVIDVGTTRVPDATRKSGF-KLTGDVKFDEVAPKCSYITPV 267 (293)
T ss_pred EEEEccCCcCccCHHHcCCCCEEEEecCcccccccccCCC-eeEcCCCHHHHHhhccEeCCC
Confidence 6889999984 678888533 22322232 456555555455566666664
No 11
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.58 E-value=35 Score=30.28 Aligned_cols=48 Identities=23% Similarity=0.311 Sum_probs=28.6
Q ss_pred EEEeecCCce-----------EEEecccee-ccCCCCCCCCCccCCcEEEEEEeeeecccc
Q psy8452 8 IIVSCIGRPT-----------ITIDVGSVV-NDCPSKHHFPRCFSQVFYLIFCRSVWYFPL 56 (166)
Q Consensus 8 ~~~~~~~~~~-----------~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~rR~~W~~pL 56 (166)
|+||++|+|- +-||||--. +....++ .+-|-|-+|.--..+..|.+|-
T Consensus 203 IvV~AvG~p~~i~~~~ik~GavVIDvGin~~~~~~~~g-~kl~GDVd~e~~~~~a~~iTPV 262 (287)
T PRK14181 203 IIIAAIGVPLFIKEEMIAEKAVIVDVGTSRVPAANPKG-YILVGDVDFNNVVPKCRAITPV 262 (287)
T ss_pred EEEEccCCcCccCHHHcCCCCEEEEecccccccccCCC-CeeEeccchHHHHhhcccccCC
Confidence 6889999984 678888432 2232221 1345555555555667777774
No 12
>PF11417 Inhibitor_G39P: Loader and inhibitor of phage G40P; InterPro: IPR024424 G39P inhibits the initiation of DNA replication by blocking G40P replicative helicase. G39P has a bipartite stricture consisting of a folded N-terminal domain and an unfolded C-terminal domain. The C-terminal is essential for helicase interaction [].; PDB: 1NO1_B.
Probab=21.33 E-value=81 Score=22.41 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCCccccC
Q psy8452 141 YDVAKLAALLHRAADMSHPPAMKETI 166 (166)
Q Consensus 141 ~Qla~LAALQH~A~~~~~~PS~~El~ 166 (166)
.+++..|.-+|.+.. ..|||..|++
T Consensus 45 ye~v~~al~~~i~~~-kfPPsiaeii 69 (71)
T PF11417_consen 45 YEIVMKALKKHIATN-KFPPSIAEII 69 (71)
T ss_dssp HHHHHHHHHHHHHH--SS---GGGG-
T ss_pred HHHHHHHHHHHHHhC-CCCcCHHHHh
Confidence 678888888888865 5899999985
No 13
>PF08109 Antimicrobial14: Lactocin 705 family; InterPro: IPR012517 This family consists of lactocin 705 which is a bacteriocin produced by Lactobacillus casei CRL 705. Lactocin 705 is a class IIb bacteriocin, whose activity depends upon the complementation of two peptides (705-alpha and 705-beta) of 33 amino acid residues each. Lactocin 705 is active against several Gram-positive bacteria, including food-borne pathogens and is a good candidate to be used for biopreservation of fermented meats [].
Probab=21.07 E-value=29 Score=21.26 Aligned_cols=15 Identities=40% Similarity=0.616 Sum_probs=12.2
Q ss_pred HHHhhhhhhcccccc
Q psy8452 115 FNQIAPDYLEGLLLV 129 (166)
Q Consensus 115 YnQVLpDYL~G~Llv 129 (166)
|-|=+||||+|-|--
T Consensus 5 yiqgipdflkgylhg 19 (31)
T PF08109_consen 5 YIQGIPDFLKGYLHG 19 (31)
T ss_pred cccccHHHHHHHHhh
Confidence 568899999998753
No 14
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.03 E-value=53 Score=29.26 Aligned_cols=46 Identities=24% Similarity=0.271 Sum_probs=30.9
Q ss_pred EEEeecCCce-----------EEEecccee-c-cCCCCCCCCCccCCcEEEEEEeeeecccc
Q psy8452 8 IIVSCIGRPT-----------ITIDVGSVV-N-DCPSKHHFPRCFSQVFYLIFCRSVWYFPL 56 (166)
Q Consensus 8 ~~~~~~~~~~-----------~~~~~~~~~-~-~~~~~~~~~~~~~~~~~l~~rR~~W~~pL 56 (166)
|+||++|+|- +-||||.-. + .|++ .+-|-|-+|.-...+..|.+|-
T Consensus 204 IvIsAvGkp~~i~~~~ik~gavVIDvGin~~~~~~~~---gkl~GDvd~~~v~~~a~~iTPV 262 (297)
T PRK14186 204 ILVAAAGRPNLIGAEMVKPGAVVVDVGIHRLPSSDGK---TRLCGDVDFEEVEPVAAAITPV 262 (297)
T ss_pred EEEEccCCcCccCHHHcCCCCEEEEeccccccccccC---CceeCCccHHHHHhhceEecCC
Confidence 7899999984 668888543 2 2221 2566666666667778888885
Done!