Query psy8452
Match_columns 166
No_of_seqs 108 out of 123
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 19:14:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8452.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8452hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dxa_B KREV interaction trappe 98.3 2.4E-06 8.2E-11 71.9 8.1 123 9-156 9-150 (322)
2 3au4_A Myosin-X; protein-prote 97.7 5.6E-05 1.9E-09 67.8 7.1 102 28-154 246-355 (555)
3 1h4r_A Merlin; FERM, neurofibr 97.7 4.1E-05 1.4E-09 63.6 5.7 67 86-161 89-157 (314)
4 3ivf_A Talin-1; FERM domain, c 97.6 9.9E-05 3.4E-09 62.9 6.0 65 88-161 158-224 (371)
5 3pvl_A Myosin VIIA isoform 1; 97.5 6.9E-05 2.4E-09 69.9 5.2 123 8-156 266-407 (655)
6 1ef1_A Moesin; membrane, FERM 97.4 0.00018 6.3E-09 58.9 5.7 67 86-161 69-137 (294)
7 3qij_A Protein 4.1; cytoskelet 97.2 0.00026 8.8E-09 59.2 4.5 116 9-154 21-144 (296)
8 4f7g_A Talin-1; alpha-helix bu 96.9 0.00074 2.5E-08 53.7 4.0 45 107-160 25-69 (222)
9 1mix_A Talin; focal adhesion, 96.5 0.0024 8.4E-08 49.4 4.3 49 103-160 10-58 (206)
10 2i1j_A Moesin; FERM, coiled-co 96.5 0.0032 1.1E-07 57.9 5.6 67 86-161 72-140 (575)
11 2al6_A Focal adhesion kinase 1 94.9 0.026 8.9E-07 48.5 4.9 106 27-157 40-152 (375)
12 4eku_A Protein-tyrosine kinase 92.1 0.57 1.9E-05 41.0 8.4 78 69-154 87-169 (392)
13 1h4r_A Merlin; FERM, neurofibr 68.8 0.97 3.3E-05 37.1 -0.1 41 41-81 91-133 (314)
14 4dxa_B KREV interaction trappe 67.4 0.77 2.6E-05 38.2 -1.0 41 41-81 88-131 (322)
15 3au4_A Myosin-X; protein-prote 53.9 3.2 0.00011 37.0 0.4 41 41-81 297-338 (555)
16 3ivf_A Talin-1; FERM domain, c 51.8 3.3 0.00011 34.9 0.2 42 40-81 157-200 (371)
17 3qij_A Protein 4.1; cytoskelet 51.2 2.9 0.0001 34.5 -0.2 42 40-81 85-127 (296)
18 1ef1_A Moesin; membrane, FERM 46.4 4 0.00014 32.9 -0.1 41 41-81 71-113 (294)
19 3pvl_A Myosin VIIA isoform 1; 35.5 7.7 0.00026 36.1 -0.1 40 41-81 346-387 (655)
20 2j0j_A Focal adhesion kinase 1 25.7 69 0.0024 28.8 4.5 61 86-154 86-149 (656)
21 2i1j_A Moesin; FERM, coiled-co 24.0 16 0.00054 33.4 -0.1 41 41-81 74-116 (575)
No 1
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=98.26 E-value=2.4e-06 Score=71.92 Aligned_cols=123 Identities=14% Similarity=0.069 Sum_probs=79.8
Q ss_pred EEeecCCceEEEecc-----ceeccCCCCCCCCCccCCcEEEEEEeeeeccccccccccceeeecccChhhHhhh-----
Q psy8452 9 IVSCIGRPTITIDVG-----SVVNDCPSKHHFPRCFSQVFYLIFCRSVWYFPLRLDCQLYVQVLFNQIAPDYLEG----- 78 (166)
Q Consensus 9 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~rR~~W~~pL~~dnelyv~~~y~q~~~dYL~d----- 78 (166)
.|-+.+.-.+.+++- .+-++|..++..+... +.|.||..+---+. .+.++++..|
T Consensus 9 ~V~l~dg~~~~~~i~~~~~tt~~el~e~lgL~~~~~-~~FaL~~~~~~~e~--------------~L~~~~~~~d~~~~W 73 (322)
T 4dxa_B 9 RIYRMDGSYRSVELKHGNNTTVQQIMEGMRLSQETQ-QYFTIWICSENLSL--------------QLKPYHKPLQHVRDW 73 (322)
T ss_dssp EEECTTSCEEEEECTTGGGCCHHHHHTTSSCCTTGG-GGEEEEEECSSCEE--------------ECCTTCCHHHHHHTH
T ss_pred EEEEECCcEEEEEEcCCCCCcHHHHHHHhCcCcccc-CeeEEEEECCcccc--------------ccCccccHHHHHHHH
Confidence 445555544444443 3455687777655322 46999996432111 2233333332
Q ss_pred ------hhhhcccCCCeEEEEeeehhhcc---ccccCcchhHHHHHHHhhhhhhcccccccCCCCCchHHHHHHHHHHHH
Q psy8452 79 ------LIVHLNTIFPVFYLIFCRSVWYF---PLRLDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAAL 149 (166)
Q Consensus 79 ------vL~~l~~~d~~~~L~~rRlvW~~---PL~fDn~lYv~~hYnQVLpDYL~G~Llv~~~~~~s~~~~~Qla~LAAL 149 (166)
+.......+. ..|+|||..|.. ++..+++....++|.|+.+|+++|.+.... ++.+.||||
T Consensus 74 ~~~l~~~~~~~~~~~~-p~l~~rr~~f~~~~~~~~~~d~~t~~l~y~Q~~~dil~G~~~c~~---------e~a~~LAAl 143 (322)
T 4dxa_B 74 PEILAELTNLDPQRET-PQLFLRRDVRLPLEVEKQIEDPLAILILFDEARYNLLKGFYTAPD---------AKLITLASL 143 (322)
T ss_dssp HHHHHHHCSCCCCCCC-CEEEEEECTTCCHHHHTTCCCHHHHHHHHHHHHHHHHHTCCCCCH---------HHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCc-eEEEEEEeecccccccccccCHHHHHHHHHHHHHHHHCCcccCCH---------HHHHHHHHH
Confidence 2221112233 479999999974 467889999999999999999999997643 699999999
Q ss_pred HHHhcCC
Q psy8452 150 LHRAADM 156 (166)
Q Consensus 150 QH~A~~~ 156 (166)
++.|.-.
T Consensus 144 ~~q~e~G 150 (322)
T 4dxa_B 144 LLQIVYG 150 (322)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 9999833
No 2
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=97.72 E-value=5.6e-05 Score=67.83 Aligned_cols=102 Identities=11% Similarity=-0.017 Sum_probs=73.9
Q ss_pred cCCCCCCCCCccCCcEEEEEEeeeeccccccccccceeeecccChhhHhhhhhhhccc-------CCCeEEEEeeehhhc
Q psy8452 28 DCPSKHHFPRCFSQVFYLIFCRSVWYFPLRLDCQLYVQVLFNQIAPDYLEGLIVHLNT-------IFPVFYLIFCRSVWY 100 (166)
Q Consensus 28 ~~~~~~~~~~~~~~~~~l~~rR~~W~~pL~~dnelyv~~~y~q~~~dYL~dvL~~l~~-------~d~~~~L~~rRlvW~ 100 (166)
+|...+..+ + -..|.|+..+ ++ ..+.+...+|+.|++...++ .+.++.|+||+-.|.
T Consensus 246 v~~~lgL~e-~-~~~FgL~~~~----------~~----~~~~L~~~~~i~D~~~~we~~~~~~~~~~~~~~l~fR~~ff~ 309 (555)
T 3au4_A 246 LIRGLAMED-S-RNMFALFEYN----------GH----VDKAIESRTVVADVLAKFEKLAATSEVGDLPWKFYFKLYCFL 309 (555)
T ss_dssp HHHHTTCTT-C-CSEEEEEEES----------SS----CEEECCTTSBHHHHHHHHHHHTTSCCTTCCCCEEEEEEEECS
T ss_pred HHHHcCCCC-C-CCceEEEEEe----------CC----eeEecCCCCchhHHHHHHHHHhhccCCCCCceEEEEEEEeec
Confidence 566777764 1 2468886531 11 13456788899998764432 245789999999999
Q ss_pred cccccCcc-hhHHHHHHHhhhhhhcccccccCCCCCchHHHHHHHHHHHHHHHhc
Q psy8452 101 FPLRLDCQ-LYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRAA 154 (166)
Q Consensus 101 ~PL~fDn~-lYv~~hYnQVLpDYL~G~Llv~~~~~~s~~~~~Qla~LAALQH~A~ 154 (166)
.|....++ ....++|.|+.+|+++|++.... ++.+.||||+-.+.
T Consensus 310 ~~~~~~~d~~~~~lly~Q~~~dil~G~~~~~~---------e~a~~LAAl~lQ~~ 355 (555)
T 3au4_A 310 DTDNVPKDSVEFAFMFEQAHEAVIHGHHPAPE---------ENLQVLAALRLQYL 355 (555)
T ss_dssp CCTTCCTTSHHHHHHHHHHHHHHHTTCSCCCH---------HHHHHHHHHHHHHH
T ss_pred CcccCCcchHHHHhhHHHHHHHHHCCCCCCCH---------HHHHHHHHHHHHHH
Confidence 88887654 77899999999999999986632 68899999965554
No 3
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=97.71 E-value=4.1e-05 Score=63.64 Aligned_cols=67 Identities=15% Similarity=0.090 Sum_probs=55.8
Q ss_pred CCCeEEEEeeehhhcccc--ccCcchhHHHHHHHhhhhhhcccccccCCCCCchHHHHHHHHHHHHHHHhcCCCCCCC
Q psy8452 86 IFPVFYLIFCRSVWYFPL--RLDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRAADMSHPPA 161 (166)
Q Consensus 86 ~d~~~~L~~rRlvW~~PL--~fDn~lYv~~hYnQVLpDYL~G~Llv~~~~~~s~~~~~Qla~LAALQH~A~~~~~~PS 161 (166)
.+.++.|.||+-.|..+. .+.++.....+|.|+.+|+++|++.... ++.+.||||+..|.-..+.|+
T Consensus 89 ~~~~~~l~fr~kf~~~~~~~~l~~~~~~~l~y~Q~~~dil~g~~~~~~---------e~a~~Laal~~Qa~~Gd~~~~ 157 (314)
T 1h4r_A 89 KEEPVTFHFLAKFYPENAEEELVQEITQHLFFLQVKKQILDEKIYCPP---------EASVLLASYAVQAKYGDYDPS 157 (314)
T ss_dssp CSSSEEEEEEESSCCSSHHHHCCSHHHHHHHHHHHHHHHHTTSSCCCH---------HHHHHHHHHHHHHHHCSCCTT
T ss_pred CCCCEEEEEEEEEecCCchhhhcCHHHHHHHHHHHHHHHhCCCccCCH---------HHHHHHHHHHHHHHHCCCCcc
Confidence 356799999999998877 5888999999999999999999997633 689999999999984444443
No 4
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=97.56 E-value=9.9e-05 Score=62.94 Aligned_cols=65 Identities=17% Similarity=0.122 Sum_probs=51.5
Q ss_pred CeEEEEeeehhhccccc--cCcchhHHHHHHHhhhhhhcccccccCCCCCchHHHHHHHHHHHHHHHhcCCCCCCC
Q psy8452 88 PVFYLIFCRSVWYFPLR--LDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRAADMSHPPA 161 (166)
Q Consensus 88 ~~~~L~~rRlvW~~PL~--fDn~lYv~~hYnQVLpDYL~G~Llv~~~~~~s~~~~~Qla~LAALQH~A~~~~~~PS 161 (166)
.++.|+|||-.|..+.. .+.+....++|.|+.+|+++|.+.... ++.+.||||+++|.-..+.|+
T Consensus 158 ~~~~l~frvKf~~~d~~~~~~D~~~~~l~y~Q~~~dil~G~~~c~~---------e~a~~LAAl~~qae~Gd~~~~ 224 (371)
T 3ivf_A 158 EHETLLLRRKFFYSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSF---------DKACEFAGFQCQIQFGPHNEQ 224 (371)
T ss_dssp TTCEEEEEECCCCBCSSCBTTCHHHHHHHHHHHHHHHHTSSSCCCH---------HHHHHHHHHHHHHHHCSCCTT
T ss_pred CCceEEEEEEEecCCccccCCCHHHHHHHHHHhhHHHhCceeecCH---------HHHHHHHHHHHHHHhCCCChh
Confidence 45679999988976533 466778999999999999999987643 689999999999984444443
No 5
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=97.55 E-value=6.9e-05 Score=69.85 Aligned_cols=123 Identities=15% Similarity=0.063 Sum_probs=81.1
Q ss_pred EEEeecCCceEEEeccc-------eeccCCCCCCCCCccCCcEEEEEEeeeeccccccccccceeeeccc-ChhhHhhhh
Q psy8452 8 IIVSCIGRPTITIDVGS-------VVNDCPSKHHFPRCFSQVFYLIFCRSVWYFPLRLDCQLYVQVLFNQ-IAPDYLEGL 79 (166)
Q Consensus 8 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~rR~~W~~pL~~dnelyv~~~y~q-~~~dYL~dv 79 (166)
+-|.+.+.-..++.+.+ +..+|...+-.. ...|.|.+.. .|.. .++ ...+|+.|+
T Consensus 266 ~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e---~~~FgL~~~~--------~dk~------~sll~~~e~vlD~ 328 (655)
T 3pvl_A 266 LPVTFMDGTTKTLLTDSATTARELCNALADKISLKD---RFGFSLYIAL--------FDKV------SSLGSGSDHVMDA 328 (655)
T ss_dssp EEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSS---CTTEEEEEEE--------TTEE------EEEETSSCBHHHH
T ss_pred EEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcc---cccceeEEec--------CCce------eecccCceEeecH
Confidence 34555555555554433 234566666654 2457777631 1211 111 456788888
Q ss_pred hhhcc---------cCCCeEEEEeeehhhccccc--cCcchhHHHHHHHhhhhhhcccccccCCCCCchHHHHHHHHHHH
Q psy8452 80 IVHLN---------TIFPVFYLIFCRSVWYFPLR--LDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAA 148 (166)
Q Consensus 80 L~~l~---------~~d~~~~L~~rRlvW~~PL~--fDn~lYv~~hYnQVLpDYL~G~Llv~~~~~~s~~~~~Qla~LAA 148 (166)
+...+ ..+.++.|+|||-.|. |-+ .+.+.+..++|.|+.+|+++|.+.... ..+.++|||
T Consensus 329 l~~~E~~~k~~~~~~~~~~~~L~FRvkff~-p~~~~~~d~it~~LlYlQ~k~dIl~Grlpc~~--------E~~a~~LAA 399 (655)
T 3pvl_A 329 ISQCEQYAKEQGAQERNAPWRLFFRKEVFT-PWHNPSEDNVATNLIYQQVVRGVKFGEYRCEK--------EDDLAELAS 399 (655)
T ss_dssp HHHHHHHHHTTTCCGGGCCCEEEEEECCCC-TTCCGGGCHHHHHHHHHHHHHHHHHTSSCCSS--------HHHHHHHHH
T ss_pred HHHHHHHHHhhccccCCCCeEEEEEEEEec-CCcccccCHHHHHHHHHHHhcccccCccCCCh--------HHHHHHHHH
Confidence 76543 2346799999999985 322 356688999999999999999996643 148999999
Q ss_pred HHHHhcCC
Q psy8452 149 LLHRAADM 156 (166)
Q Consensus 149 LQH~A~~~ 156 (166)
|++.|.-.
T Consensus 400 l~~Qae~G 407 (655)
T 3pvl_A 400 QQYFVDYG 407 (655)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhC
Confidence 99999833
No 6
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=97.43 E-value=0.00018 Score=58.92 Aligned_cols=67 Identities=12% Similarity=0.066 Sum_probs=53.4
Q ss_pred CCCeEEEEeeehhhcccc--ccCcchhHHHHHHHhhhhhhcccccccCCCCCchHHHHHHHHHHHHHHHhcCCCCCCC
Q psy8452 86 IFPVFYLIFCRSVWYFPL--RLDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRAADMSHPPA 161 (166)
Q Consensus 86 ~d~~~~L~~rRlvW~~PL--~fDn~lYv~~hYnQVLpDYL~G~Llv~~~~~~s~~~~~Qla~LAALQH~A~~~~~~PS 161 (166)
.+.++.|.||+-.|.... .+.++.....+|.|+.+|+++|++.... ++.+.||||+..|.-..+.|+
T Consensus 69 ~~~~~~l~fr~kf~~~~~~~~l~~~~~~~l~y~Q~~~dil~g~~~~~~---------e~a~~Laal~~q~~~Gd~~~~ 137 (294)
T 1ef1_A 69 KESPLLFKFRAKFYPEDVSEELIQDITQRLFFLQVKEGILNDDIYCPP---------ETAVLLASYAVQSKYGDFNKE 137 (294)
T ss_dssp CCSSEEEEEEESSCCSCHHHHCCSHHHHHHHHHHHHHHHHTTSSCCCH---------HHHHHHHHHHHHHHHCSCCTT
T ss_pred CCCCEEEEEEEEEECCChHHhhccHHHHHHHHHHHHHHHHcCcccCCH---------HHHHHHHHHHHHHHhCCCCcc
Confidence 356799999999997633 5777888999999999999999996643 689999999999984443333
No 7
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=97.22 E-value=0.00026 Score=59.16 Aligned_cols=116 Identities=14% Similarity=0.060 Sum_probs=78.1
Q ss_pred EEeecCCceEEEeccc-------eeccCCCCCCCCCccCCcEEEEEEeeeeccccccccccceeeecccChhhHhhhhhh
Q psy8452 9 IVSCIGRPTITIDVGS-------VVNDCPSKHHFPRCFSQVFYLIFCRSVWYFPLRLDCQLYVQVLFNQIAPDYLEGLIV 81 (166)
Q Consensus 9 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~rR~~W~~pL~~dnelyv~~~y~q~~~dYL~dvL~ 81 (166)
-|...+.-+.++.+.+ +..+|...+... ..-|.|.+.+- +++ ..-+.+..++.+...
T Consensus 21 ~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e---~~~FgL~~~~~--------~~~-----~~wLd~~k~i~~q~~ 84 (296)
T 3qij_A 21 KVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLE---EDYFGLAIWDN--------ATS-----KTWLDSAKEIKKQVR 84 (296)
T ss_dssp EEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSS---GGGEEEEEEEE--------TTE-----EEECCTTSBHHHHC-
T ss_pred EEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCC---cceeEEEEEcC--------CCc-----cchhccchhHHHhcC
Confidence 3444444455555443 234566667665 23488887642 111 223344455555532
Q ss_pred hcccCCCeEEEEeeehhhc-cccccCcchhHHHHHHHhhhhhhcccccccCCCCCchHHHHHHHHHHHHHHHhc
Q psy8452 82 HLNTIFPVFYLIFCRSVWY-FPLRLDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRAA 154 (166)
Q Consensus 82 ~l~~~d~~~~L~~rRlvW~-~PL~fDn~lYv~~hYnQVLpDYL~G~Llv~~~~~~s~~~~~Qla~LAALQH~A~ 154 (166)
+.++.|.||+-.|. .|..+..+.....+|.|+.+|+++|.+.... ++.+.||||+..|.
T Consensus 85 -----~~~~~l~frvkfy~~~~~~l~~~~tr~l~ylQ~~~dil~G~~~c~~---------e~a~~LAAl~~Qae 144 (296)
T 3qij_A 85 -----GVPWNFTFNVKFYPPDPAQLTEDITRYYLCLQLRQDIVAGRLPCSF---------ATLALLGSYTIQSE 144 (296)
T ss_dssp -------CCEEEEEESSCCSCGGGSSCHHHHHHHHHHHHHHHHHTSSCCCH---------HHHHHHHHHHHHHH
T ss_pred -----CCCcEEEEEEEEeCCCchhccCHHHHHHHHHHHHHHHHcCCCCCCH---------HHHHHHHHHHHHHh
Confidence 35788999999996 6888888888899999999999999998743 68899999999887
No 8
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus}
Probab=96.88 E-value=0.00074 Score=53.74 Aligned_cols=45 Identities=18% Similarity=0.122 Sum_probs=36.3
Q ss_pred cchhHHHHHHHhhhhhhcccccccCCCCCchHHHHHHHHHHHHHHHhcCCCCCC
Q psy8452 107 CQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRAADMSHPP 160 (166)
Q Consensus 107 n~lYv~~hYnQVLpDYL~G~Llv~~~~~~s~~~~~Qla~LAALQH~A~~~~~~P 160 (166)
.+..++++|.|+.+||++|++.... ++.++||||+.+|.-..+.|
T Consensus 25 Dp~~l~l~ylQ~~~dil~G~~~~~~---------e~a~~LAal~~Qae~Gd~~~ 69 (222)
T 4f7g_A 25 DPVQLNLLYVQARDDILNGSHPVSF---------DKACEFAGFQCQIQFGPHNE 69 (222)
T ss_dssp -CCHHHHHHHHHHHHHHTTSSCCCH---------HHHHHHHHHHHHHHHCSCCT
T ss_pred CHHHHHHHHHHHHHHHhCCcccCCH---------HHHHHHHHHHHHHHHCCCCc
Confidence 4567889999999999999987643 68899999999998444433
No 9
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B
Probab=96.48 E-value=0.0024 Score=49.35 Aligned_cols=49 Identities=16% Similarity=0.093 Sum_probs=39.3
Q ss_pred cccCcchhHHHHHHHhhhhhhcccccccCCCCCchHHHHHHHHHHHHHHHhcCCCCCC
Q psy8452 103 LRLDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRAADMSHPP 160 (166)
Q Consensus 103 L~fDn~lYv~~hYnQVLpDYL~G~Llv~~~~~~s~~~~~Qla~LAALQH~A~~~~~~P 160 (166)
+..+++.....+|.|+..|+++|++.... ++.++||||+++|.-..+.|
T Consensus 10 ~~~~d~~~~~l~y~Q~~~dil~g~~~~~~---------~~a~~Laal~~qa~~Gd~~~ 58 (206)
T 1mix_A 10 VDSRDPVQLNLLYVQARDDILNGSHPVSF---------DKACEFAGYQCQIQFGPHNE 58 (206)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHTTSSCCCH---------HHHHHHHHHHHHHHHCSCCT
T ss_pred CCcCCHHHHHHHHHHHHHHHHCCccccCH---------HHHHHHHHHhhhheecCCCc
Confidence 34667788899999999999999986643 68999999999998444333
No 10
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=96.47 E-value=0.0032 Score=57.88 Aligned_cols=67 Identities=16% Similarity=0.159 Sum_probs=53.3
Q ss_pred CCCeEEEEeeehhhcccc--ccCcchhHHHHHHHhhhhhhcccccccCCCCCchHHHHHHHHHHHHHHHhcCCCCCCC
Q psy8452 86 IFPVFYLIFCRSVWYFPL--RLDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRAADMSHPPA 161 (166)
Q Consensus 86 ~d~~~~L~~rRlvW~~PL--~fDn~lYv~~hYnQVLpDYL~G~Llv~~~~~~s~~~~~Qla~LAALQH~A~~~~~~PS 161 (166)
.+.++.|+||+-.|.... .+..+.....+|.|+.+|+++|.+..+. .+.+.||||+..|.-..+.|+
T Consensus 72 ~~~~~~L~FRvkfy~~~~~~~l~d~~t~~LlYlQvk~dIl~G~l~c~~---------e~a~~LAAL~lQae~GDy~~~ 140 (575)
T 2i1j_A 72 KENPLQFKFRAKFYPEDVADELIQEITLKLFYLQVKNAILSDEIYCPP---------ETSVLLASYAVQARHGDHNPA 140 (575)
T ss_dssp CCSSEEEEEEESSCCSSHHHHCCSHHHHHHHHHHHHHHHHTTSSCCCH---------HHHHHHHHHHHHHHHCSCCTT
T ss_pred CCCCeEEEEEEEEcCCChhhhcCCHHHHHHHHHHHHHHHhCCCCCCCH---------HHHHHHHHHHHHHHhcCCChh
Confidence 456799999999997633 4677888899999999999999997643 689999999998874444333
No 11
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=94.94 E-value=0.026 Score=48.47 Aligned_cols=106 Identities=9% Similarity=0.014 Sum_probs=61.1
Q ss_pred ccCCCCCCCCCccCCcEEEEEEeeeeccccccccccceeeecccChhhHhhhhhhhcc--cCCCeEEEEeeehhhccccc
Q psy8452 27 NDCPSKHHFPRCFSQVFYLIFCRSVWYFPLRLDCQLYVQVLFNQIAPDYLEGLIVHLN--TIFPVFYLIFCRSVWYFPLR 104 (166)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~l~~rR~~W~~pL~~dnelyv~~~y~q~~~dYL~dvL~~l~--~~d~~~~L~~rRlvW~~PL~ 104 (166)
.+|...+. +|. ..|.|.+.... +++ .+-+.+.+++.+++...+ +.+.++.+.||.-- .|-.
T Consensus 40 ~v~~~lgL--~~~-~~FgL~~~~~~-------~~~-----~~wL~~~~~l~~~~~k~~~~~~~~~~~l~fRvrF--~~~~ 102 (375)
T 2al6_A 40 KIVDCHKV--KNV-ACYGLRLSHLQ-------SEE-----VHWLHLDMGVSNVREKFELAHPPEEWKYELRIRY--LPKG 102 (375)
T ss_dssp HHHHHTTC--SCG-GGEEEEEEETT-------SSC-----EEEECTTSBHHHHHHHHHTTSCGGGEEEEEEECC--CCTT
T ss_pred HHHHHcCC--CeE-eEEEEEEEEcC-------CCc-----eEeeCCccchhhhhhhhhcccCCCceEEEEEEEE--ecCC
Confidence 46777777 344 46788664320 111 233445666666654321 13356777777532 2222
Q ss_pred c-----CcchhHHHHHHHhhhhhhcccccccCCCCCchHHHHHHHHHHHHHHHhcCCC
Q psy8452 105 L-----DCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRAADMS 157 (166)
Q Consensus 105 f-----Dn~lYv~~hYnQVLpDYL~G~Llv~~~~~~s~~~~~Qla~LAALQH~A~~~~ 157 (166)
+ +.+.-...+|.|+.+||++|+... .++ ...+.||||+.+|.-..
T Consensus 103 ~~~l~~~D~~t~~~~y~Q~r~Dil~g~~~~-----~~~---e~al~LAaL~~q~~~gD 152 (375)
T 2al6_A 103 FLNQFTEDKPTLNFFYQQVKNDYMLEIADQ-----VDQ---EIALKLGCLEIRRSYGE 152 (375)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTTTT-----SCH---HHHHHHHHHHHHHHTTT
T ss_pred HHHhhhcCHHHHHHHHHHHHHHHHcCCCcc-----CCH---HHHHHHHHHHHHHHhhh
Confidence 1 222345889999999999998321 121 56778999988876433
No 12
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=92.11 E-value=0.57 Score=40.99 Aligned_cols=78 Identities=8% Similarity=-0.076 Sum_probs=47.1
Q ss_pred ccChhhHhhhhhhhccc--CCCeEEEEeeehh-hccccccCcchh--HHHHHHHhhhhhhcccccccCCCCCchHHHHHH
Q psy8452 69 NQIAPDYLEGLIVHLNT--IFPVFYLIFCRSV-WYFPLRLDCQLY--VQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDV 143 (166)
Q Consensus 69 ~q~~~dYL~dvL~~l~~--~d~~~~L~~rRlv-W~~PL~fDn~lY--v~~hYnQVLpDYL~G~Llv~~~~~~s~~~~~Ql 143 (166)
-+.+++-|.+++...+. ...++.+.||+-- ...|..+....- .+.+|.|+..||++|... +.+. .+.
T Consensus 87 wL~~~~~l~~v~~k~~~~~~~~~~~~~fRvrF~p~d~~~l~~~D~~~~~ylY~Q~r~D~l~g~~~-----~~~~---e~a 158 (392)
T 4eku_A 87 WLHPQMTVGEVQDKYECLHVEAEWRYDLQIRYLPEDFMESLKEDRTTLLYFYQQLRNDYMQRYAS-----KVSE---GMA 158 (392)
T ss_dssp EECTTSBHHHHHHHSTTTSCGGGEEEEEEECSCCTTTHHHHTTCHHHHHHHHHHHHHHHHHHTTT-----TSCH---HHH
T ss_pred ECCCCCcHHHHHhhhhhccCCCceEEEEEEEEEcCCHHHhhhcChHHHHHHHHHHHHHHHcCCCC-----CCCH---HHH
Confidence 34566777777654332 2246788887652 222223222222 345899999999999621 2232 466
Q ss_pred HHHHHHHHHhc
Q psy8452 144 AKLAALLHRAA 154 (166)
Q Consensus 144 a~LAALQH~A~ 154 (166)
.+||||+.++.
T Consensus 159 l~LAaL~~q~~ 169 (392)
T 4eku_A 159 LQLGCLELRRF 169 (392)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88999998764
No 13
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=68.82 E-value=0.97 Score=37.14 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=36.6
Q ss_pred CcEEEEEEeeeecccc--ccccccceeeecccChhhHhhhhhh
Q psy8452 41 QVFYLIFCRSVWYFPL--RLDCQLYVQVLFNQIAPDYLEGLIV 81 (166)
Q Consensus 41 ~~~~l~~rR~~W~~pL--~~dnelyv~~~y~q~~~dYL~dvL~ 81 (166)
.++.|.||+-.|..+. .+.++....++|.|..+||+.|.+.
T Consensus 91 ~~~~l~fr~kf~~~~~~~~l~~~~~~~l~y~Q~~~dil~g~~~ 133 (314)
T 1h4r_A 91 EPVTFHFLAKFYPENAEEELVQEITQHLFFLQVKKQILDEKIY 133 (314)
T ss_dssp SSEEEEEEESSCCSSHHHHCCSHHHHHHHHHHHHHHHHTTSSC
T ss_pred CCEEEEEEEEEecCCchhhhcCHHHHHHHHHHHHHHHhCCCcc
Confidence 5789999999998877 6888999999999999999999764
No 14
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=67.42 E-value=0.77 Score=38.20 Aligned_cols=41 Identities=20% Similarity=0.305 Sum_probs=34.9
Q ss_pred CcEEEEEEeeeecc---ccccccccceeeecccChhhHhhhhhh
Q psy8452 41 QVFYLIFCRSVWYF---PLRLDCQLYVQVLFNQIAPDYLEGLIV 81 (166)
Q Consensus 41 ~~~~l~~rR~~W~~---pL~~dnelyv~~~y~q~~~dYL~dvL~ 81 (166)
.+..|+|||..|.. +...+++....++|.|..+||+.|.+.
T Consensus 88 ~~p~l~~rr~~f~~~~~~~~~~d~~t~~l~y~Q~~~dil~G~~~ 131 (322)
T 4dxa_B 88 ETPQLFLRRDVRLPLEVEKQIEDPLAILILFDEARYNLLKGFYT 131 (322)
T ss_dssp CCCEEEEEECTTCCHHHHTTCCCHHHHHHHHHHHHHHHHHTCCC
T ss_pred CceEEEEEEeecccccccccccCHHHHHHHHHHHHHHHHCCccc
Confidence 34589999999963 467889999999999999999999764
No 15
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=53.95 E-value=3.2 Score=37.02 Aligned_cols=41 Identities=10% Similarity=0.054 Sum_probs=35.2
Q ss_pred CcEEEEEEeeeecccccccc-ccceeeecccChhhHhhhhhh
Q psy8452 41 QVFYLIFCRSVWYFPLRLDC-QLYVQVLFNQIAPDYLEGLIV 81 (166)
Q Consensus 41 ~~~~l~~rR~~W~~pL~~dn-elyv~~~y~q~~~dYL~dvL~ 81 (166)
.++.|.||+-.|..|....+ +.+..++|.|..+||+.|.+.
T Consensus 297 ~~~~l~fR~~ff~~~~~~~~d~~~~~lly~Q~~~dil~G~~~ 338 (555)
T 3au4_A 297 LPWKFYFKLYCFLDTDNVPKDSVEFAFMFEQAHEAVIHGHHP 338 (555)
T ss_dssp CCCEEEEEEEECSCCTTCCTTSHHHHHHHHHHHHHHHTTCSC
T ss_pred CceEEEEEEEeecCcccCCcchHHHHhhHHHHHHHHHCCCCC
Confidence 57899999999999988765 478889999999999998653
No 16
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=51.76 E-value=3.3 Score=34.89 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=33.4
Q ss_pred CCcEEEEEEeeeeccccc--cccccceeeecccChhhHhhhhhh
Q psy8452 40 SQVFYLIFCRSVWYFPLR--LDCQLYVQVLFNQIAPDYLEGLIV 81 (166)
Q Consensus 40 ~~~~~l~~rR~~W~~pL~--~dnelyv~~~y~q~~~dYL~dvL~ 81 (166)
+.++.|+|||-.|-.+.. .+.+....++|.|..+||+.|.+.
T Consensus 157 ~~~~~l~frvKf~~~d~~~~~~D~~~~~l~y~Q~~~dil~G~~~ 200 (371)
T 3ivf_A 157 EEHETLLLRRKFFYSDQNVDSRDPVQLNLLYVQARDDILNGSHP 200 (371)
T ss_dssp CTTCEEEEEECCCCBCSSCBTTCHHHHHHHHHHHHHHHHTSSSC
T ss_pred CCCceEEEEEEEecCCccccCCCHHHHHHHHHHhhHHHhCceee
Confidence 346789999988875433 467788899999999999999753
No 17
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=51.16 E-value=2.9 Score=34.47 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=35.8
Q ss_pred CCcEEEEEEeeeec-cccccccccceeeecccChhhHhhhhhh
Q psy8452 40 SQVFYLIFCRSVWY-FPLRLDCQLYVQVLFNQIAPDYLEGLIV 81 (166)
Q Consensus 40 ~~~~~l~~rR~~W~-~pL~~dnelyv~~~y~q~~~dYL~dvL~ 81 (166)
+.++.|.||+-.|. .|..+..+....++|-|..+|++.|.+.
T Consensus 85 ~~~~~l~frvkfy~~~~~~l~~~~tr~l~ylQ~~~dil~G~~~ 127 (296)
T 3qij_A 85 GVPWNFTFNVKFYPPDPAQLTEDITRYYLCLQLRQDIVAGRLP 127 (296)
T ss_dssp --CCEEEEEESSCCSCGGGSSCHHHHHHHHHHHHHHHHHTSSC
T ss_pred CCCcEEEEEEEEeCCCchhccCHHHHHHHHHHHHHHHHcCCCC
Confidence 35688999999996 6888889988889999999999999764
No 18
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=46.40 E-value=4 Score=32.93 Aligned_cols=41 Identities=15% Similarity=0.115 Sum_probs=34.8
Q ss_pred CcEEEEEEeeeecc-cc-ccccccceeeecccChhhHhhhhhh
Q psy8452 41 QVFYLIFCRSVWYF-PL-RLDCQLYVQVLFNQIAPDYLEGLIV 81 (166)
Q Consensus 41 ~~~~l~~rR~~W~~-pL-~~dnelyv~~~y~q~~~dYL~dvL~ 81 (166)
.++.|.||+-.|.. |- .+.++....++|.|..+||+.|.+.
T Consensus 71 ~~~~l~fr~kf~~~~~~~~l~~~~~~~l~y~Q~~~dil~g~~~ 113 (294)
T 1ef1_A 71 SPLLFKFRAKFYPEDVSEELIQDITQRLFFLQVKEGILNDDIY 113 (294)
T ss_dssp SSEEEEEEESSCCSCHHHHCCSHHHHHHHHHHHHHHHHTTSSC
T ss_pred CCEEEEEEEEEECCChHHhhccHHHHHHHHHHHHHHHHcCccc
Confidence 56899999999976 43 6778888899999999999999764
No 19
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=35.54 E-value=7.7 Score=36.07 Aligned_cols=40 Identities=15% Similarity=0.277 Sum_probs=32.8
Q ss_pred CcEEEEEEeeeeccccc--cccccceeeecccChhhHhhhhhh
Q psy8452 41 QVFYLIFCRSVWYFPLR--LDCQLYVQVLFNQIAPDYLEGLIV 81 (166)
Q Consensus 41 ~~~~l~~rR~~W~~pL~--~dnelyv~~~y~q~~~dYL~dvL~ 81 (166)
.++.|+|||-.|. |.+ .+.+.+..++|.|..+||+.|.+.
T Consensus 346 ~~~~L~FRvkff~-p~~~~~~d~it~~LlYlQ~k~dIl~Grlp 387 (655)
T 3pvl_A 346 APWRLFFRKEVFT-PWHNPSEDNVATNLIYQQVVRGVKFGEYR 387 (655)
T ss_dssp CCCEEEEEECCCC-TTCCGGGCHHHHHHHHHHHHHHHHHTSSC
T ss_pred CCeEEEEEEEEec-CCcccccCHHHHHHHHHHHhcccccCccC
Confidence 5789999999985 332 356788899999999999999864
No 20
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=25.67 E-value=69 Score=28.85 Aligned_cols=61 Identities=15% Similarity=-0.013 Sum_probs=36.1
Q ss_pred CCCeEEEEeeehhhcc-ccccCcchhHHH--HHHHhhhhhhcccccccCCCCCchHHHHHHHHHHHHHHHhc
Q psy8452 86 IFPVFYLIFCRSVWYF-PLRLDCQLYVQV--LFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRAA 154 (166)
Q Consensus 86 ~d~~~~L~~rRlvW~~-PL~fDn~lYv~~--hYnQVLpDYL~G~Llv~~~~~~s~~~~~Qla~LAALQH~A~ 154 (166)
...++.+.||=--+-. |..+=.+...++ .|.|+-.||++|++.... + .....||+|.-++.
T Consensus 86 ~~~~~~~~~rvrf~p~~~~~l~~~d~~~~~ylf~Q~r~D~~~~~~~~~~-----~---~~al~La~l~~~~~ 149 (656)
T 2j0j_A 86 PPEEWKYELRIRYLPKGFLNQFTEDKPTLNFFYQQVKNDYMLEIADQVD-----Q---EIALKLGCLEIRRS 149 (656)
T ss_dssp CTTSEEEEEEECCCCTTHHHHHHTCHHHHHHHHHHHHHHHHHHTGGGSC-----H---HHHHHHHHHHHHHH
T ss_pred CCcceEEEEEEEEcCCCHHHHHhccHHHHHHHHHHHHHHHHhccccccc-----H---hHHHHHHHHHHHHH
Confidence 3467888887544333 222212233344 456999999999864322 1 56777777766554
No 21
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=24.01 E-value=16 Score=33.45 Aligned_cols=41 Identities=12% Similarity=0.128 Sum_probs=34.4
Q ss_pred CcEEEEEEeeeecc-cc-ccccccceeeecccChhhHhhhhhh
Q psy8452 41 QVFYLIFCRSVWYF-PL-RLDCQLYVQVLFNQIAPDYLEGLIV 81 (166)
Q Consensus 41 ~~~~l~~rR~~W~~-pL-~~dnelyv~~~y~q~~~dYL~dvL~ 81 (166)
.++.|+||+-.|.. |. .+..+....++|.|..+||+.|.+.
T Consensus 74 ~~~~L~FRvkfy~~~~~~~l~d~~t~~LlYlQvk~dIl~G~l~ 116 (575)
T 2i1j_A 74 NPLQFKFRAKFYPEDVADELIQEITLKLFYLQVKNAILSDEIY 116 (575)
T ss_dssp SSEEEEEEESSCCSSHHHHCCSHHHHHHHHHHHHHHHHTTSSC
T ss_pred CCeEEEEEEEEcCCChhhhcCCHHHHHHHHHHHHHHHhCCCCC
Confidence 56899999999976 33 5778888889999999999999764
Done!