RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8452
         (166 letters)



>d2c1ia2 d.341.1.1 (A:46-267) Peptidoglycan GlcNAc deacetylase
           {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 222

 Score = 24.9 bits (54), Expect = 4.4
 Identities = 6/20 (30%), Positives = 7/20 (35%)

Query: 111 VQVLFNQIAPDYLEGLLLVL 130
           V   F+ I   YL      L
Sbjct: 193 VSAFFDVIQSSYLLEKDAAL 212


>d2oola1 d.110.2.1 (A:140-333) Sensor protein PhyB2
           {Rhodopseudomonas palustris [TaxId: 1076]}
          Length = 194

 Score = 24.6 bits (53), Expect = 5.7
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 52  WYFPLRLDCQLYVQVLFNQIA 72
             + +R  C+L  QVL  QI 
Sbjct: 167 VSYEVRQACELIAQVLTWQIG 187



 Score = 24.6 bits (53), Expect = 5.7
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 99  WYFPLRLDCQLYVQVLFNQIA 119
             + +R  C+L  QVL  QI 
Sbjct: 167 VSYEVRQACELIAQVLTWQIG 187


>d3c2wa1 d.110.2.1 (A:118-309) Bacteriophytochrome BphP {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 192

 Score = 24.2 bits (52), Expect = 7.4
 Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 12/56 (21%)

Query: 74  DYLEGLIVHLNTIFPVFY------LIFC-----RSVWYFPLRLDCQLYVQVLFNQI 118
           +YL  + V  +    +        L  C     + +  +P+R+  Q++ QV    +
Sbjct: 132 EYLTNMGVRASMSISIVVGGKLWGLFSCHHMSPKLIP-YPVRMSFQIFSQVCSAIV 186


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.333    0.148    0.494 

Gapped
Lambda     K      H
   0.267   0.0556    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 668,650
Number of extensions: 29622
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 11
Length of query: 166
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 87
Effective length of database: 1,322,926
Effective search space: 115094562
Effective search space used: 115094562
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 49 (23.0 bits)