BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8454
(936 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 130/421 (30%), Positives = 200/421 (47%), Gaps = 71/421 (16%)
Query: 524 TVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINL 583
T LH+AA G +V +L+ A N++ +PLH AA GH N++ LLL + A+ NL
Sbjct: 49 TPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNL 108
Query: 584 TDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSII 643
G+T LH+A GH V AL+ E+E + + +G +PLH AA++G +
Sbjct: 109 ATTAGHTPLHIAAREGHVETVLALL---EKEA---SQACMTKKGFTPLHVAAKYGKVRVA 162
Query: 644 QLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPP 700
+LLL+ A+P K +TPL A NNL + KL L+P+ P
Sbjct: 163 ELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKL--------------LLPRG--GSPH 206
Query: 701 SPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKS--- 757
SP G P +I + N++++ +S
Sbjct: 207 SP----------------------AWNGYTPLHIAA-----------KQNQVEVARSLLQ 233
Query: 758 YFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSL 817
Y G +N E V PL A +E E + ++ + N N+ N G T LH+
Sbjct: 234 YGGSANAESV--QGVTPLHLAA--QEGHAEMVALLLSKQA-NGNLGNKSGLTPLHLVAQE 288
Query: 818 GHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNT 877
GH + +LI + ++ TR+ TPLH+A N+ +V+ LL Q +VNA+ G +
Sbjct: 289 GHVPVADVLIKHGVMVDATTRMG-YTPLHVASHYGNIKLVKFLL-QHQADVNAKTKLGYS 346
Query: 878 ALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLS---LVRVLTHEAPFV 934
LH AA HT++ TLLLK+GA P + G T L +A+++ +S +++V+T E FV
Sbjct: 347 PLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFV 406
Query: 935 L 935
L
Sbjct: 407 L 407
Score = 89.7 bits (221), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 6/148 (4%)
Query: 518 MDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHS 577
M +GFT LHVAA YG+++V +L+LE A N+ G +PLH A + +++ LLL
Sbjct: 142 MTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR 201
Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
G S + G T LH+A ++L+ + + NA + QG +PLH AA+
Sbjct: 202 GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG------SANAESVQGVTPLHLAAQE 255
Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQ 665
G+ ++ LLL AN L NK +TPL
Sbjct: 256 GHAEMVALLLSKQANGNLGNKSGLTPLH 283
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 84/176 (47%), Gaps = 27/176 (15%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
G+T LH+AA +++V +L+ G N++ + G +PLH AA GH ++ LLL A+
Sbjct: 212 GYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG 271
Query: 582 NLTDNEGNTALHLATNNGHETCVKALI----------------------YFNEQEVLNL- 618
NL + G T LHL GH LI Y N + V L
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL 331
Query: 619 ----NINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNL 670
++NA G SPLH AA+ G+T I+ LLL +GA+P + TPL A L
Sbjct: 332 QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRL 387
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 52/79 (65%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
G+T LHVA+ YG IK+V +L+ AD N++ G SPLH AA +GH +++ LLL +GAS
Sbjct: 311 GYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP 370
Query: 582 NLTDNEGNTALHLATNNGH 600
N ++G T L +A G+
Sbjct: 371 NEVSSDGTTPLAIAKRLGY 389
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 2/119 (1%)
Query: 809 TALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNV 868
T LH+A+ +GH +V+ L+ A N V+ VK TPLH+A + + + + LL K V
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPN-VSNVKVETPLHMAARAGHTEVAKYLLQNK-AKV 73
Query: 869 NAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
NA+ T LH AA HTN+ LLL++ A P + G T LH+A + + V L
Sbjct: 74 NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL 132
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 60/127 (47%), Gaps = 2/127 (1%)
Query: 801 NICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLL 860
N+ N T LH+A GH ++ + L+ +A +N + Q TPLH A + + ++V+LL
Sbjct: 41 NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ-TPLHCAARIGHTNMVKLL 99
Query: 861 LAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTS 920
L N N G+T LH AA H LL+ A G T LH+A +
Sbjct: 100 LE-NNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGK 158
Query: 921 LSLVRVL 927
+ + +L
Sbjct: 159 VRVAELL 165
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 108 bits (271), Expect = 9e-24, Method: Composition-based stats.
Identities = 60/130 (46%), Positives = 80/130 (61%), Gaps = 6/130 (4%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
G T LH+AA G ++VV L+LE GAD N++D G +PLH AA GH V+ LLL +GA +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
N D G T LHLA NGH VK L+ ++NA + G +PLH AAR G+
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLE------AGADVNAKDKNGRTPLHLAARNGHLE 115
Query: 642 IIQLLLDHGA 651
+++LLL+ GA
Sbjct: 116 VVKLLLEAGA 125
Score = 89.7 bits (221), Expect = 7e-18, Method: Composition-based stats.
Identities = 51/128 (39%), Positives = 78/128 (60%), Gaps = 2/128 (1%)
Query: 806 DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQ 865
+G T LH+A GH ++V+LL+ AD+N + + TPLH+A +N +L +V+LLL A
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNGHLEVVKLLLEAG- 58
Query: 866 CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVR 925
+VNA+D G T LH AA N H + LLL++GA K+ G+T LH+A + L +V+
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 118
Query: 926 VLTHEAPF 933
+L +
Sbjct: 119 LLLEAGAY 126
Score = 89.4 bits (220), Expect = 9e-18, Method: Composition-based stats.
Identities = 53/125 (42%), Positives = 71/125 (56%), Gaps = 9/125 (7%)
Query: 555 GCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQE 614
G +PLH AA GH V+ LLL +GA +N D G T LHLA NGH VK L+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE----- 56
Query: 615 VLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLH 671
++NA + G +PLH AAR G+ +++LLL+ GA+ ++K TPL A +L
Sbjct: 57 -AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 115
Query: 672 VAKLL 676
V KLL
Sbjct: 116 VVKLL 120
Score = 87.8 bits (216), Expect = 2e-17, Method: Composition-based stats.
Identities = 46/90 (51%), Positives = 57/90 (63%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D G T LH+AA G ++VV L+LE GAD N++D G +PLH AA GH V+ LLL +G
Sbjct: 32 DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALI 608
A +N D G T LHLA NGH VK L+
Sbjct: 92 ADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Score = 78.2 bits (191), Expect = 2e-14, Method: Composition-based stats.
Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 2/101 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++N + +G T LH+A GH ++V+LL+ AD+N + + TPLH+A +N +L +V+
Sbjct: 27 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNGHLEVVK 85
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
LLL A +VNA+D G T LH AA N H + LLL++GA
Sbjct: 86 LLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/61 (52%), Positives = 41/61 (67%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D G T LH+AA G ++VV L+LE GAD N++D G +PLH AA GH V+ LLL +G
Sbjct: 65 DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124
Query: 579 A 579
A
Sbjct: 125 A 125
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 107/220 (48%), Gaps = 15/220 (6%)
Query: 457 LTKLFEFARLGDGDKVRAILQ-EENKKEDSESL------PLCHPLCSCDDCEEAIN--LK 507
+ KL GD + VR +L+ E ED+E CHPLC C C A K
Sbjct: 12 VEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAK 71
Query: 508 HSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGH 567
S G + LHVAAL+GR ++ L+L+ GA+ +++ PLH A +GH
Sbjct: 72 VPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGH 131
Query: 568 QNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQG 627
V+ LL S A N D GNT L A + GH V L+ +INA NN+G
Sbjct: 132 FQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGA------SINASNNKG 185
Query: 628 DSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
++ LH A + +++LLL HGA+ + NKR+ T + A
Sbjct: 186 NTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCA 225
Score = 96.7 bits (239), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 90/187 (48%), Gaps = 13/187 (6%)
Query: 738 KKVEQLFALIENNEIKLIKSYFGLSNE--EKVPDNA-------CHPLCQCAKCKEDVVES 788
++VE+L + + ++++++ + E E D CHPLCQC KC
Sbjct: 10 REVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRL 69
Query: 789 ESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIA 848
P + L +N+ + DG + LH+A G DL+ LL+ + A+ Q PLH+A
Sbjct: 70 AKVPASG--LGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAG-ARNADQAVPLHLA 126
Query: 849 CQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYG 908
CQ + +V+ LL + N +D GNT L YA H L LLL+ GA N+ G
Sbjct: 127 CQQGHFQVVKCLLDS-NAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKG 185
Query: 909 QTCLHMA 915
T LH A
Sbjct: 186 NTALHEA 192
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 867 NVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRV 926
NV +QD G++ LH AA++ +L LLLK GA +N LH+A Q +V+
Sbjct: 80 NVTSQD--GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKC 137
Query: 927 L 927
L
Sbjct: 138 L 138
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 98.6 bits (244), Expect = 1e-20, Method: Composition-based stats.
Identities = 65/162 (40%), Positives = 88/162 (54%), Gaps = 10/162 (6%)
Query: 518 MDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHS 577
M + G ++ A + +V DL LE GAD N+ D G +PLH AA GH+ V+ LLL
Sbjct: 1 MSELGKRLIEAAENGNKDRVKDL-LENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQ 59
Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
GA N D++G T LHLA NGH+ VK L+ + NA ++ G +PLH AA
Sbjct: 60 GADPNAKDSDGKTPLHLAAENGHKEVVKLLL------SQGADPNAKDSDGKTPLHLAAEN 113
Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
G+ +++LLL GA+P + TPL A N V KLL
Sbjct: 114 GHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 88.6 bits (218), Expect = 2e-17, Method: Composition-based stats.
Identities = 54/133 (40%), Positives = 73/133 (54%), Gaps = 6/133 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D G T LH+AA G +VV L+L GAD N++D G +PLH AA GH+ V+ LLL G
Sbjct: 34 DSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQG 93
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
A N D++G T LHLA NGH+ VK L+ + N ++ G +PL A G
Sbjct: 94 ADPNAKDSDGKTPLHLAAENGHKEVVKLLL------SQGADPNTSDSDGRTPLDLAREHG 147
Query: 639 YTSIIQLLLDHGA 651
+++LL G
Sbjct: 148 NEEVVKLLEKQGG 160
Score = 83.6 bits (205), Expect = 5e-16, Method: Composition-based stats.
Identities = 49/133 (36%), Positives = 79/133 (59%), Gaps = 2/133 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++N +SDG T LH+A GH ++V+LL++ AD N + TPLH+A +N + +V+
Sbjct: 29 DVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGK-TPLHLAAENGHKEVVK 87
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
LLL+ + + NA+D G T LH AA N H + LLL GA P + G+T L +A++
Sbjct: 88 LLLS-QGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREH 146
Query: 919 TSLSLVRVLTHEA 931
+ +V++L +
Sbjct: 147 GNEEVVKLLEKQG 159
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 43/114 (37%), Positives = 65/114 (57%), Gaps = 2/114 (1%)
Query: 814 ATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDY 873
A G+ D V+ L+ AD+N + TPLH+A +N + +V+LLL+ + + NA+D
Sbjct: 11 AAENGNKDRVKDLLENGADVN-ASDSDGKTPLHLAAENGHKEVVKLLLS-QGADPNAKDS 68
Query: 874 RGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
G T LH AA N H + LLL GA P K+ G+T LH+A + +V++L
Sbjct: 69 DGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLL 122
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 801 NICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLL 860
N +SDG T LH+A GH ++V+LL++ AD N + TPLH+A +N + +V+LL
Sbjct: 64 NAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGK-TPLHLAAENGHKEVVKLL 122
Query: 861 LAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
L+ + + N D G T L A + + + LL K G
Sbjct: 123 LS-QGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 98.2 bits (243), Expect = 2e-20, Method: Composition-based stats.
Identities = 64/162 (39%), Positives = 88/162 (54%), Gaps = 10/162 (6%)
Query: 518 MDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHS 577
M + G ++ A + +V DL LE GAD N+ D G +PLHYAA GH+ ++ LLL
Sbjct: 1 MSELGKRLIEAAENGNKDRVKDL-LENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSK 59
Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
GA N D++G T LH A NGH+ VK L+ + NA ++ G +PLH AA
Sbjct: 60 GADPNAKDSDGRTPLHYAAENGHKEIVKLLL------SKGADPNAKDSDGRTPLHYAAEN 113
Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
G+ I++LLL GA+P + TPL A N + KLL
Sbjct: 114 GHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 88.6 bits (218), Expect = 2e-17, Method: Composition-based stats.
Identities = 53/133 (39%), Positives = 72/133 (54%), Gaps = 6/133 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D G T LH AA G ++V L+L GAD N++D G +PLHYAA GH+ ++ LLL G
Sbjct: 34 DSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKG 93
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
A N D++G T LH A NGH+ VK L+ + N ++ G +PL A G
Sbjct: 94 ADPNAKDSDGRTPLHYAAENGHKEIVKLLL------SKGADPNTSDSDGRTPLDLAREHG 147
Query: 639 YTSIIQLLLDHGA 651
I++LL G
Sbjct: 148 NEEIVKLLEKQGG 160
Score = 85.9 bits (211), Expect = 8e-17, Method: Composition-based stats.
Identities = 55/149 (36%), Positives = 83/149 (55%), Gaps = 10/149 (6%)
Query: 783 EDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQL 842
+D++E+ + P N +SDG T LH A GH ++V+LL++ AD N
Sbjct: 21 KDLLENGADP--------NASDSDGRTPLHYAAENGHKEIVKLLLSKGADPN-AKDSDGR 71
Query: 843 TPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQ 902
TPLH A +N + IV+LLL+ K + NA+D G T LHYAA N H + LLL GA P
Sbjct: 72 TPLHYAAENGHKEIVKLLLS-KGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 130
Query: 903 IKNHYGQTCLHMAQQMTSLSLVRVLTHEA 931
+ G+T L +A++ + +V++L +
Sbjct: 131 TSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
Score = 70.1 bits (170), Expect = 6e-12, Method: Composition-based stats.
Identities = 46/114 (40%), Positives = 63/114 (55%), Gaps = 2/114 (1%)
Query: 814 ATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDY 873
A G+ D V+ L+ AD N + TPLH A +N + IV+LLL+ K + NA+D
Sbjct: 11 AAENGNKDRVKDLLENGADPN-ASDSDGRTPLHYAAENGHKEIVKLLLS-KGADPNAKDS 68
Query: 874 RGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
G T LHYAA N H + LLL GA P K+ G+T LH A + +V++L
Sbjct: 69 DGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLL 122
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/99 (38%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Query: 801 NICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLL 860
N +SDG T LH A GH ++V+LL++ AD N TPLH A +N + IV+LL
Sbjct: 64 NAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN-AKDSDGRTPLHYAAENGHKEIVKLL 122
Query: 861 LAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
L+ K + N D G T L A + + + LL K G
Sbjct: 123 LS-KGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 97.4 bits (241), Expect = 3e-20, Method: Composition-based stats.
Identities = 60/162 (37%), Positives = 89/162 (54%), Gaps = 10/162 (6%)
Query: 518 MDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHS 577
M + G ++ A + +V DL+ E GAD N+ D G +PLHYAA GH+ ++ LL+
Sbjct: 1 MSELGKRLIEAAENGNKDRVKDLI-ENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISK 59
Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
GA +N D++G T LH A GH+ VK LI ++NA ++ G +PLH AA+
Sbjct: 60 GADVNAKDSDGRTPLHYAAKEGHKEIVKLLI------SKGADVNAKDSDGRTPLHYAAKE 113
Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
G+ I++LL+ GA+ + TPL A N + KLL
Sbjct: 114 GHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 91.3 bits (225), Expect = 3e-18, Method: Composition-based stats.
Identities = 51/133 (38%), Positives = 73/133 (54%), Gaps = 6/133 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D G T LH AA G ++V L++ GAD N++D G +PLHYAA GH+ ++ LL+ G
Sbjct: 34 DSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKG 93
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
A +N D++G T LH A GH+ VK LI ++N ++ G +PL A G
Sbjct: 94 ADVNAKDSDGRTPLHYAAKEGHKEIVKLLI------SKGADVNTSDSDGRTPLDLAREHG 147
Query: 639 YTSIIQLLLDHGA 651
I++LL G
Sbjct: 148 NEEIVKLLEKQGG 160
Score = 83.6 bits (205), Expect = 5e-16, Method: Composition-based stats.
Identities = 49/133 (36%), Positives = 76/133 (57%), Gaps = 2/133 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++N +SDG T LH A GH ++V+LLI+ AD+N TPLH A + + IV+
Sbjct: 29 DVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVN-AKDSDGRTPLHYAAKEGHKEIVK 87
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
LL++ K +VNA+D G T LHYAA H + LL+ GA + G+T L +A++
Sbjct: 88 LLIS-KGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREH 146
Query: 919 TSLSLVRVLTHEA 931
+ +V++L +
Sbjct: 147 GNEEIVKLLEKQG 159
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 43/114 (37%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 814 ATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDY 873
A G+ D V+ LI AD+N + TPLH A + + IV+LL++ K +VNA+D
Sbjct: 11 AAENGNKDRVKDLIENGADVN-ASDSDGRTPLHYAAKEGHKEIVKLLIS-KGADVNAKDS 68
Query: 874 RGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
G T LHYAA H + LL+ GA K+ G+T LH A + +V++L
Sbjct: 69 DGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLL 122
Score = 59.7 bits (143), Expect = 8e-09, Method: Composition-based stats.
Identities = 38/101 (37%), Positives = 55/101 (54%), Gaps = 2/101 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++N +SDG T LH A GH ++V+LLI+ AD+N TPLH A + + IV+
Sbjct: 62 DVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVN-AKDSDGRTPLHYAAKEGHKEIVK 120
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
LL++ K +VN D G T L A + + + LL K G
Sbjct: 121 LLIS-KGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 95.1 bits (235), Expect = 1e-19, Method: Composition-based stats.
Identities = 61/162 (37%), Positives = 89/162 (54%), Gaps = 10/162 (6%)
Query: 518 MDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHS 577
M + G ++ A + +V DL+ E GAD N+ D G +PLH+AA GH+ V+ LL+
Sbjct: 1 MSELGKRLIEAAENGNKDRVKDLI-ENGADVNASDSDGRTPLHHAAENGHKEVVKLLISK 59
Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
GA +N D++G T LH A NGH+ VK LI ++NA ++ G +PLH AA
Sbjct: 60 GADVNAKDSDGRTPLHHAAENGHKEVVKLLI------SKGADVNAKDSDGRTPLHHAAEN 113
Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
G+ +++LL+ GA+ + TPL A N V KLL
Sbjct: 114 GHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 89.4 bits (220), Expect = 9e-18, Method: Composition-based stats.
Identities = 52/133 (39%), Positives = 74/133 (55%), Gaps = 6/133 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D G T LH AA G +VV L++ GAD N++D G +PLH+AA GH+ V+ LL+ G
Sbjct: 34 DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKG 93
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
A +N D++G T LH A NGH+ VK LI ++N ++ G +PL A G
Sbjct: 94 ADVNAKDSDGRTPLHHAAENGHKEVVKLLI------SKGADVNTSDSDGRTPLDLAREHG 147
Query: 639 YTSIIQLLLDHGA 651
+++LL G
Sbjct: 148 NEEVVKLLEKQGG 160
Score = 82.0 bits (201), Expect = 1e-15, Method: Composition-based stats.
Identities = 49/133 (36%), Positives = 78/133 (58%), Gaps = 2/133 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++N +SDG T LH A GH ++V+LLI+ AD+N TPLH A +N + +V+
Sbjct: 29 DVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVN-AKDSDGRTPLHHAAENGHKEVVK 87
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
LL++ K +VNA+D G T LH+AA N H + LL+ GA + G+T L +A++
Sbjct: 88 LLIS-KGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREH 146
Query: 919 TSLSLVRVLTHEA 931
+ +V++L +
Sbjct: 147 GNEEVVKLLEKQG 159
Score = 65.9 bits (159), Expect = 1e-10, Method: Composition-based stats.
Identities = 43/114 (37%), Positives = 64/114 (56%), Gaps = 2/114 (1%)
Query: 814 ATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDY 873
A G+ D V+ LI AD+N + TPLH A +N + +V+LL++ K +VNA+D
Sbjct: 11 AAENGNKDRVKDLIENGADVN-ASDSDGRTPLHHAAENGHKEVVKLLIS-KGADVNAKDS 68
Query: 874 RGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
G T LH+AA N H + LL+ GA K+ G+T LH A + +V++L
Sbjct: 69 DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLL 122
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 2/101 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++N +SDG T LH A GH ++V+LLI+ AD+N TPLH A +N + +V+
Sbjct: 62 DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN-AKDSDGRTPLHHAAENGHKEVVK 120
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
LL++ K +VN D G T L A + + + LL K G
Sbjct: 121 LLIS-KGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 93.2 bits (230), Expect = 6e-19, Method: Composition-based stats.
Identities = 52/130 (40%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
AA G+ V +++ GAD N+ D G +PLH AAT GH ++ +LL GA +N D G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG 80
Query: 589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLD 648
+T LHLA GH V+ L+ ++NAV+ GD+PLH AA G+ I+++LL
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGA------DVNAVDTWGDTPLHLAAIMGHLEIVEVLLK 134
Query: 649 HGANPTLENK 658
HGA+ ++K
Sbjct: 135 HGADVNAQDK 144
Score = 82.8 bits (203), Expect = 8e-16, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 82/156 (52%), Gaps = 6/156 (3%)
Query: 459 KLFEFARLGDGDKVRAILQE--ENKKEDSESLPLCHPLCSCDDCE-EAINLKHSQSKPTT 515
KL E AR G D+VR ++ + D+ L H + E + LKH
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGAD---V 73
Query: 516 QSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLL 575
++D G T LH+AAL G +++V+++L+ GAD N+ D G +PLH AA GH ++ +LL
Sbjct: 74 NAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLL 133
Query: 576 HSGASINLTDNEGNTALHLATNNGHETCVKALIYFN 611
GA +N D G TA ++ +NG+E + L N
Sbjct: 134 KHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 78.6 bits (192), Expect = 2e-14, Method: Composition-based stats.
Identities = 49/153 (32%), Positives = 82/153 (53%), Gaps = 5/153 (3%)
Query: 775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
L + A+ +D E R + ++N ++ G T LH+A + GH ++V +L+ + AD+N
Sbjct: 18 LLEAARAGQD---DEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN 74
Query: 835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
+ + TPLH+A +L IV +LL +VNA D G+T LH AAI H + +L
Sbjct: 75 AID-IXGSTPLHLAALIGHLEIVEVLLK-HGADVNAVDTWGDTPLHLAAIMGHLEIVEVL 132
Query: 895 LKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
LK GA ++ +G+T ++ + L +L
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 64.3 bits (155), Expect = 3e-10, Method: Composition-based stats.
Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 562 AATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNIN 621
AA G + + +L+ +GA +N TD G T LHLA GH V+ L+ ++N
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA------DVN 74
Query: 622 AVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
A++ G +PLH AA G+ I+++LL HGA+ + TPL A
Sbjct: 75 AIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLA 120
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 37/98 (37%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++N + G T LH+A +GH ++V +L+ + AD+N V TPLH+A +L IV
Sbjct: 72 DVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGD-TPLHLAAIMGHLEIVE 130
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK 896
+LL +VNAQD G TA + N + +LA +L K
Sbjct: 131 VLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 92.8 bits (229), Expect = 7e-19, Method: Composition-based stats.
Identities = 50/130 (38%), Positives = 77/130 (59%), Gaps = 6/130 (4%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
AA G+ V +++ GAD N+ D G +PLH AA GH ++ +LL GA ++ +D G
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG 80
Query: 589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLD 648
T LHLA GH V+ L+ ++NA+++ G +PLH AA+WGY I+++LL
Sbjct: 81 YTPLHLAAYWGHLEIVEVLLKNGA------DVNAMDSDGMTPLHLAAKWGYLEIVEVLLK 134
Query: 649 HGANPTLENK 658
HGA+ ++K
Sbjct: 135 HGADVNAQDK 144
Score = 81.6 bits (200), Expect = 2e-15, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 6/156 (3%)
Query: 459 KLFEFARLGDGDKVRAILQ---EENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTT 515
KL E AR G D+VR ++ + N +++ + PL S + LKH
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGAD---V 73
Query: 516 QSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLL 575
+ D G+T LH+AA +G +++V+++L+ GAD N+ D G +PLH AA G+ ++ +LL
Sbjct: 74 DASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLL 133
Query: 576 HSGASINLTDNEGNTALHLATNNGHETCVKALIYFN 611
GA +N D G TA ++ +NG+E + L N
Sbjct: 134 KHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 68.9 bits (167), Expect = 1e-11, Method: Composition-based stats.
Identities = 47/153 (30%), Positives = 79/153 (51%), Gaps = 5/153 (3%)
Query: 775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
L + A+ +D E R + ++N ++ G T LH+A GH ++V +L+ + AD++
Sbjct: 18 LLEAARAGQD---DEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVD 74
Query: 835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
+ V TPLH+A +L IV +LL +VNA D G T LH AA + + +L
Sbjct: 75 -ASDVFGYTPLHLAAYWGHLEIVEVLLK-NGADVNAMDSDGMTPLHLAAKWGYLEIVEVL 132
Query: 895 LKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
LK GA ++ +G+T ++ + L +L
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 67.0 bits (162), Expect = 5e-11, Method: Composition-based stats.
Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 6/106 (5%)
Query: 562 AATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNIN 621
AA G + + +L+ +GA +N DN G T LHLA +GH V+ L+ +++
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGA------DVD 74
Query: 622 AVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
A + G +PLH AA WG+ I+++LL +GA+ + +TPL A
Sbjct: 75 ASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLA 120
Score = 59.7 bits (143), Expect = 7e-09, Method: Composition-based stats.
Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 807 GYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQC 866
GYT LH+A GH ++V +L+ AD+N + +TPLH+A + L IV +LL
Sbjct: 80 GYTPLHLAAYWGHLEIVEVLLKNGADVNAMDS-DGMTPLHLAAKWGYLEIVEVLLK-HGA 137
Query: 867 NVNAQDYRGNTALHYAAINNHTNLATLLLK 896
+VNAQD G TA + N + +LA +L K
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 92.8 bits (229), Expect = 8e-19, Method: Composition-based stats.
Identities = 52/130 (40%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
AA G+ V +++ GAD N+ D G +PLH AAT GH ++ +LL GA +N D G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG 80
Query: 589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLD 648
+T LHLA GH V+ L+ ++NAV+ GD+PLH AA G+ I+++LL
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGA------DVNAVDTWGDTPLHLAAIMGHLEIVEVLLK 134
Query: 649 HGANPTLENK 658
HGA+ ++K
Sbjct: 135 HGADVNAQDK 144
Score = 82.8 bits (203), Expect = 7e-16, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 82/156 (52%), Gaps = 6/156 (3%)
Query: 459 KLFEFARLGDGDKVRAILQE--ENKKEDSESLPLCHPLCSCDDCE-EAINLKHSQSKPTT 515
KL E AR G D+VR ++ + D+ L H + E + LKH
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGAD---V 73
Query: 516 QSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLL 575
++D G T LH+AAL G +++V+++L+ GAD N+ D G +PLH AA GH ++ +LL
Sbjct: 74 NAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLL 133
Query: 576 HSGASINLTDNEGNTALHLATNNGHETCVKALIYFN 611
GA +N D G TA ++ +NG+E + L N
Sbjct: 134 KHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 78.2 bits (191), Expect = 2e-14, Method: Composition-based stats.
Identities = 49/153 (32%), Positives = 82/153 (53%), Gaps = 5/153 (3%)
Query: 775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
L + A+ +D E R + ++N ++ G T LH+A + GH ++V +L+ + AD+N
Sbjct: 18 LLEAARAGQD---DEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN 74
Query: 835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
+ + TPLH+A +L IV +LL +VNA D G+T LH AAI H + +L
Sbjct: 75 AID-IMGSTPLHLAALIGHLEIVEVLLK-HGADVNAVDTWGDTPLHLAAIMGHLEIVEVL 132
Query: 895 LKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
LK GA ++ +G+T ++ + L +L
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 64.3 bits (155), Expect = 3e-10, Method: Composition-based stats.
Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 562 AATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNIN 621
AA G + + +L+ +GA +N TD G T LHLA GH V+ L+ ++N
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA------DVN 74
Query: 622 AVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
A++ G +PLH AA G+ I+++LL HGA+ + TPL A
Sbjct: 75 AIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLA 120
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 37/98 (37%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++N + G T LH+A +GH ++V +L+ + AD+N V TPLH+A +L IV
Sbjct: 72 DVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGD-TPLHLAAIMGHLEIVE 130
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK 896
+LL +VNAQD G TA + N + +LA +L K
Sbjct: 131 VLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 92.0 bits (227), Expect = 1e-18, Method: Composition-based stats.
Identities = 50/130 (38%), Positives = 78/130 (60%), Gaps = 6/130 (4%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
AA G+ V +++ GAD N+ D G +PLH AA+ GH ++ +LL +GA +N +D G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG 80
Query: 589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLD 648
T LHLA GH V+ L+ ++NA +N G +PLH AA++G+ I+++LL
Sbjct: 81 ITPLHLAAATGHLEIVEVLLKHGA------DVNAYDNDGHTPLHLAAKYGHLEIVEVLLK 134
Query: 649 HGANPTLENK 658
HGA+ ++K
Sbjct: 135 HGADVNAQDK 144
Score = 86.3 bits (212), Expect = 6e-17, Method: Composition-based stats.
Identities = 41/92 (44%), Positives = 62/92 (67%)
Query: 517 SMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLH 576
+ D+ G+T LH+AA G +++V+++L+ GAD N+ DL G +PLH AA GH ++ +LL
Sbjct: 42 ATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLK 101
Query: 577 SGASINLTDNEGNTALHLATNNGHETCVKALI 608
GA +N DN+G+T LHLA GH V+ L+
Sbjct: 102 HGADVNAYDNDGHTPLHLAAKYGHLEIVEVLL 133
Score = 81.3 bits (199), Expect = 2e-15, Method: Composition-based stats.
Identities = 51/153 (33%), Positives = 83/153 (54%), Gaps = 5/153 (3%)
Query: 775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
L + A+ +D E R + ++N ++DGYT LH+A S GH ++V +L+ AD+N
Sbjct: 18 LLEAARAGQD---DEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVN 74
Query: 835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
+ + +TPLH+A +L IV +LL +VNA D G+T LH AA H + +L
Sbjct: 75 -ASDLTGITPLHLAAATGHLEIVEVLL-KHGADVNAYDNDGHTPLHLAAKYGHLEIVEVL 132
Query: 895 LKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
LK GA ++ +G+T ++ + L +L
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 75.5 bits (184), Expect = 1e-13, Method: Composition-based stats.
Identities = 51/152 (33%), Positives = 80/152 (52%), Gaps = 6/152 (3%)
Query: 459 KLFEFARLGDGDKVRAILQ---EENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTT 515
KL E AR G D+VR ++ + N ++ PL L + + E + +
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNATDNDGYTPL--HLAASNGHLEIVEVLLKNGADVN 74
Query: 516 QSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLL 575
S D G T LH+AA G +++V+++L+ GAD N+ D G +PLH AA GH ++ +LL
Sbjct: 75 AS-DLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLL 133
Query: 576 HSGASINLTDNEGNTALHLATNNGHETCVKAL 607
GA +N D G TA ++ +NG+E + L
Sbjct: 134 KHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 619 NINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
++NA +N G +PLH AA G+ I+++LL +GA+ + +TPL A
Sbjct: 39 DVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLA 87
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 84/151 (55%), Gaps = 6/151 (3%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
DD G++ LH+AA GR ++V +L GA N+ + GC+PLHYAA++ + ++LL G
Sbjct: 70 DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
A+ + D+ TA+H A G+ + L+Y+ + N + +G++PLH A
Sbjct: 130 ANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKA------STNIQDTEGNTPLHLACDEE 183
Query: 639 YTSIIQLLLDHGANPTLENKRKVTPLQNANN 669
+LL+ GA+ +ENK + TPLQ A
Sbjct: 184 RVEEAKLLVSQGASIYIENKEEKTPLQVAKG 214
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 64/124 (51%), Gaps = 2/124 (1%)
Query: 804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAA 863
+ D TALH A S GH ++V L+ +N +PLHIA IV+ LL
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG-WSPLHIAASAGRDEIVKALLG- 94
Query: 864 KQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSL 923
K VNA + G T LHYAA N +A +LL+ GA P K+HY T +H A +L +
Sbjct: 95 KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKM 154
Query: 924 VRVL 927
+ +L
Sbjct: 155 IHIL 158
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 71/159 (44%), Gaps = 5/159 (3%)
Query: 769 DNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLIN 828
D PL A D + + + + +N N +G T LH A S +++ +L+
Sbjct: 71 DAGWSPLHIAASAGRDEI---VKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE 127
Query: 829 YRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHT 888
A+ + + T +H A NL ++ +LL K + N QD GNT LH A
Sbjct: 128 GGANPDAKDHY-EATAMHRAAAKGNLKMIHILLYYK-ASTNIQDTEGNTPLHLACDEERV 185
Query: 889 NLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
A LL+ GA I+N +T L +A+ L L R++
Sbjct: 186 EEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLILKRMV 224
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 84/151 (55%), Gaps = 6/151 (3%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
DD G++ LH+AA GR ++V +L GA N+ + GC+PLHYAA++ + ++LL G
Sbjct: 71 DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 130
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
A+ + D+ TA+H A G+ + L+Y+ + N + +G++PLH A
Sbjct: 131 ANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKA------STNIQDTEGNTPLHLACDEE 184
Query: 639 YTSIIQLLLDHGANPTLENKRKVTPLQNANN 669
+LL+ GA+ +ENK + TPLQ A
Sbjct: 185 RVEEAKLLVSQGASIYIENKEEKTPLQVAKG 215
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 64/124 (51%), Gaps = 2/124 (1%)
Query: 804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAA 863
+ D TALH A S GH ++V L+ +N +PLHIA IV+ LL
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG-WSPLHIAASAGRDEIVKALLG- 95
Query: 864 KQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSL 923
K VNA + G T LHYAA N +A +LL+ GA P K+HY T +H A +L +
Sbjct: 96 KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKM 155
Query: 924 VRVL 927
+ +L
Sbjct: 156 IHIL 159
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 71/159 (44%), Gaps = 5/159 (3%)
Query: 769 DNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLIN 828
D PL A D + + + + +N N +G T LH A S +++ +L+
Sbjct: 72 DAGWSPLHIAASAGRDEI---VKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE 128
Query: 829 YRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHT 888
A+ + + T +H A NL ++ +LL K + N QD GNT LH A
Sbjct: 129 GGANPDAKDHY-EATAMHRAAAKGNLKMIHILLYYK-ASTNIQDTEGNTPLHLACDEERV 186
Query: 889 NLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
A LL+ GA I+N +T L +A+ L L R++
Sbjct: 187 EEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLILKRMV 225
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 91.7 bits (226), Expect = 2e-18, Method: Composition-based stats.
Identities = 49/130 (37%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
AA G+ V +++ GAD N+ D G +PLH AA GH ++ +LL +GA +N D G
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNG 68
Query: 589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLD 648
T LHLA + GH V+ L+ + ++NA + G +PL+ AA WG+ I+++LL
Sbjct: 69 TTPLHLAASLGHLEIVEVLLKYGA------DVNAKDATGITPLYLAAYWGHLEIVEVLLK 122
Query: 649 HGANPTLENK 658
HGA+ ++K
Sbjct: 123 HGADVNAQDK 132
Score = 73.9 bits (180), Expect = 4e-13, Method: Composition-based stats.
Identities = 49/152 (32%), Positives = 80/152 (52%), Gaps = 6/152 (3%)
Query: 459 KLFEFARLGDGDKVRAILQ---EENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTT 515
KL E AR G D+VR ++ + N + PL H + E L + +
Sbjct: 5 KLLEAARAGQDDEVRILMANGADANAYDHYGRTPL-HMAAAVGHLEIVEVLLRNGAD--V 61
Query: 516 QSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLL 575
++D G T LH+AA G +++V+++L+ GAD N++D G +PL+ AA GH ++ +LL
Sbjct: 62 NAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLL 121
Query: 576 HSGASINLTDNEGNTALHLATNNGHETCVKAL 607
GA +N D G TA ++ + G+E + L
Sbjct: 122 KHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 56/92 (60%)
Query: 517 SMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLH 576
+ D G T LH+AA G +++V+++L GAD N+ D G +PLH AA+ GH ++ +LL
Sbjct: 30 AYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLK 89
Query: 577 SGASINLTDNEGNTALHLATNNGHETCVKALI 608
GA +N D G T L+LA GH V+ L+
Sbjct: 90 YGADVNAKDATGITPLYLAAYWGHLEIVEVLL 121
Score = 70.1 bits (170), Expect = 5e-12, Method: Composition-based stats.
Identities = 48/153 (31%), Positives = 79/153 (51%), Gaps = 5/153 (3%)
Query: 775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
L + A+ +D E R + + N + G T LH+A ++GH ++V +L+ AD+N
Sbjct: 6 LLEAARAGQD---DEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVN 62
Query: 835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
V TPLH+A +L IV +LL +VNA+D G T L+ AA H + +L
Sbjct: 63 AVD-TNGTTPLHLAASLGHLEIVEVLLKYG-ADVNAKDATGITPLYLAAYWGHLEIVEVL 120
Query: 895 LKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
LK GA ++ +G+T ++ + + L +L
Sbjct: 121 LKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 63.5 bits (153), Expect = 5e-10, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 562 AATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNIN 621
AA G + + +L+ +GA N D+ G T LH+A GH V+ L+ ++N
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGA------DVN 62
Query: 622 AVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPL 664
AV+ G +PLH AA G+ I+++LL +GA+ ++ +TPL
Sbjct: 63 AVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPL 105
Score = 37.7 bits (86), Expect = 0.027, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 621 NAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNL 670
NA ++ G +PLH AA G+ I+++LL +GA+ + TPL A +L
Sbjct: 29 NAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASL 78
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 90.9 bits (224), Expect = 3e-18, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 6/128 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D G+T LH+AA G +++V+++L+ GAD N++D G +PLH AA GH ++ +LL +G
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 91
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
A +N D +G T LHLA GH V+ L+ ++NA + G +P A R G
Sbjct: 92 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLK------AGADVNAQDKFGKTPFDLAIREG 145
Query: 639 YTSIIQLL 646
+ I ++L
Sbjct: 146 HEDIAEVL 153
Score = 90.9 bits (224), Expect = 3e-18, Method: Composition-based stats.
Identities = 52/139 (37%), Positives = 78/139 (56%), Gaps = 6/139 (4%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
AA G+ V +++ GAD N++D G +PLH AA GH ++ +LL +GA +N D +G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLD 648
T LHLA GH V+ L+ ++NA + G +PLH AAR G+ I+++LL
Sbjct: 69 YTPLHLAAREGHLEIVEVLLK------AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Query: 649 HGANPTLENKRKVTPLQNA 667
GA+ ++K TP A
Sbjct: 123 AGADVNAQDKFGKTPFDLA 141
Score = 82.8 bits (203), Expect = 8e-16, Method: Composition-based stats.
Identities = 53/157 (33%), Positives = 83/157 (52%), Gaps = 5/157 (3%)
Query: 775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
L + A+ +D E R + ++N + DGYT LH+A GH ++V +L+ AD+N
Sbjct: 6 LLEAARAGQD---DEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
+ TPLH+A + +L IV +LL A +VNA+D G T LH AA H + +L
Sbjct: 63 AKDK-DGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVL 120
Query: 895 LKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEA 931
LK+GA ++ +G+T +A + + VL A
Sbjct: 121 LKAGADVNAQDKFGKTPFDLAIREGHEDIAEVLQKAA 157
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 90.5 bits (223), Expect = 4e-18, Method: Composition-based stats.
Identities = 59/162 (36%), Positives = 87/162 (53%), Gaps = 18/162 (11%)
Query: 459 KLFEFARLGDGDKVRAILQ---EENKKEDSESLPL------CHPLCSCDDCEEAINLKHS 509
KL E AR G D+VR ++ + N +D S PL HP + E + LKH
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHP-----EIVEVL-LKHG 70
Query: 510 QSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQN 569
+ D G+T LH+AA G +++V+++L+ GAD N+QD G +PLH AA RGH
Sbjct: 71 AD---VNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLE 127
Query: 570 VLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFN 611
++ +LL GA +N D G TA ++ +NG+E + L N
Sbjct: 128 IVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 90.1 bits (222), Expect = 6e-18, Method: Composition-based stats.
Identities = 50/130 (38%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
AA G+ V +++ GAD N+ D G +PLH AA GH ++ +LL GA +N D +G
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLD 648
T LHLA +NGH V+ L+ + ++NA + G +PLH AA G+ I+++LL
Sbjct: 81 WTPLHLAADNGHLEIVEVLLKYGA------DVNAQDAYGLTPLHLAADRGHLEIVEVLLK 134
Query: 649 HGANPTLENK 658
HGA+ ++K
Sbjct: 135 HGADVNAQDK 144
Score = 76.6 bits (187), Expect = 5e-14, Method: Composition-based stats.
Identities = 50/153 (32%), Positives = 79/153 (51%), Gaps = 5/153 (3%)
Query: 775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
L + A+ +D E R + ++N + G T LH+A +GH ++V +L+ + AD+N
Sbjct: 18 LLEAARAGQD---DEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVN 74
Query: 835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
TPLH+A N +L IV +LL +VNAQD G T LH AA H + +L
Sbjct: 75 -ARDTDGWTPLHLAADNGHLEIVEVLLKYG-ADVNAQDAYGLTPLHLAADRGHLEIVEVL 132
Query: 895 LKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
LK GA ++ +G+T ++ + L +L
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 68.6 bits (166), Expect = 2e-11, Method: Composition-based stats.
Identities = 39/98 (39%), Positives = 58/98 (59%), Gaps = 2/98 (2%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++N ++DG+T LH+A GH ++V +L+ Y AD+N LTPLH+A +L IV
Sbjct: 72 DVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVN-AQDAYGLTPLHLAADRGHLEIVE 130
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK 896
+LL +VNAQD G TA + N + +LA +L K
Sbjct: 131 VLL-KHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 63.2 bits (152), Expect = 7e-10, Method: Composition-based stats.
Identities = 36/106 (33%), Positives = 60/106 (56%), Gaps = 6/106 (5%)
Query: 562 AATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNIN 621
AA G + + +L+ +GA +N D++G+T LHLA GH V+ L+ ++N
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGA------DVN 74
Query: 622 AVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
A + G +PLH AA G+ I+++LL +GA+ ++ +TPL A
Sbjct: 75 ARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLA 120
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 619 NINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQ-NANNLHV 672
++NA ++QG +PLH AA G+ I+++LL HGA+ + TPL A+N H+
Sbjct: 39 DVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHL 93
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 90.5 bits (223), Expect = 4e-18, Method: Composition-based stats.
Identities = 55/151 (36%), Positives = 84/151 (55%), Gaps = 9/151 (5%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
AA G+ V +++ GAD N++D G +PLH AA GH ++ +LL +GA +N D +G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLD 648
T LHLA GH V+ L+ ++NA + G +PLH AAR G+ I+++LL
Sbjct: 69 YTPLHLAAREGHLEIVEVLLK------AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Query: 649 HGANPTLENKRKVTPLQNA---NNLHVAKLL 676
GA+ ++K TP A N +A++L
Sbjct: 123 AGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 85.9 bits (211), Expect = 1e-16, Method: Composition-based stats.
Identities = 47/128 (36%), Positives = 73/128 (57%), Gaps = 6/128 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D G+T LH+AA G +++V+++L+ GAD N++D G +PLH AA GH ++ +LL +G
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 91
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
A +N D +G T LHLA GH V+ L+ ++NA + G +P A G
Sbjct: 92 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLK------AGADVNAQDKFGKTPFDLAIDNG 145
Query: 639 YTSIIQLL 646
I ++L
Sbjct: 146 NEDIAEVL 153
Score = 82.4 bits (202), Expect = 1e-15, Method: Composition-based stats.
Identities = 53/157 (33%), Positives = 83/157 (52%), Gaps = 5/157 (3%)
Query: 775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
L + A+ +D E R + ++N + DGYT LH+A GH ++V +L+ AD+N
Sbjct: 6 LLEAARAGQD---DEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
+ TPLH+A + +L IV +LL A +VNA+D G T LH AA H + +L
Sbjct: 63 AKDK-DGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVL 120
Query: 895 LKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEA 931
LK+GA ++ +G+T +A + + VL A
Sbjct: 121 LKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQKAA 157
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 89.0 bits (219), Expect = 1e-17, Method: Composition-based stats.
Identities = 58/158 (36%), Positives = 86/158 (54%), Gaps = 10/158 (6%)
Query: 459 KLFEFARLGDGDKVRAILQ---EENKKEDSESLPLCHPLCSCDDCEEAIN--LKHSQSKP 513
KL E AR G D+VR ++ + N ++DS PL L + E + LKH
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAEDDSGKTPL--HLAAIKGHLEIVEVLLKHGAD-- 72
Query: 514 TTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLL 573
+ D G T LH+AALYG +++V+++L+ GAD N+ D G +PLH AA GH ++ +
Sbjct: 73 -VNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEV 131
Query: 574 LLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFN 611
LL GA +N D G TA ++ +NG+E + L N
Sbjct: 132 LLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 85.1 bits (209), Expect = 2e-16, Method: Composition-based stats.
Identities = 48/130 (36%), Positives = 75/130 (57%), Gaps = 6/130 (4%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
AA G+ V +++ GAD N++D G +PLH AA +GH ++ +LL GA +N D G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
Query: 589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLD 648
+T LHLA GH V+ L+ ++NA + G +PLH AA G+ I+++LL
Sbjct: 81 DTPLHLAALYGHLEIVEVLLKNGA------DVNATDTYGFTPLHLAADAGHLEIVEVLLK 134
Query: 649 HGANPTLENK 658
+GA+ ++K
Sbjct: 135 YGADVNAQDK 144
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 48/153 (31%), Positives = 78/153 (50%), Gaps = 5/153 (3%)
Query: 775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
L + A+ +D E R + ++N + G T LH+A GH ++V +L+ + AD+N
Sbjct: 18 LLEAARAGQD---DEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVN 74
Query: 835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
++ TPLH+A +L IV +LL +VNA D G T LH AA H + +L
Sbjct: 75 AADKMGD-TPLHLAALYGHLEIVEVLLK-NGADVNATDTYGFTPLHLAADAGHLEIVEVL 132
Query: 895 LKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
LK GA ++ +G+T ++ + L +L
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 69.7 bits (169), Expect = 6e-12, Method: Composition-based stats.
Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 9/121 (7%)
Query: 562 AATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNIN 621
AA G + + +L+ +GA +N D+ G T LHLA GH V+ L+ ++N
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGA------DVN 74
Query: 622 AVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQ---NANNLHVAKLLNA 678
A + GD+PLH AA +G+ I+++LL +GA+ + TPL +A +L + ++L
Sbjct: 75 AADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLK 134
Query: 679 Y 679
Y
Sbjct: 135 Y 135
Score = 59.3 bits (142), Expect = 9e-09, Method: Composition-based stats.
Identities = 37/98 (37%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++N + G T LH+A GH ++V +L+ AD+N T TPLH+A +L IV
Sbjct: 72 DVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVN-ATDTYGFTPLHLAADAGHLEIVE 130
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK 896
+LL +VNAQD G TA + N + +LA +L K
Sbjct: 131 VLLKYG-ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 83/151 (54%), Gaps = 6/151 (3%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
DD G++ LH+AA GR ++V +L GA N+ + GC+PLHYAA++ + ++LL G
Sbjct: 70 DDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
A+ + D+ TA+H A G+ V L+++ + N + +G++PLH A
Sbjct: 130 ANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA------STNIQDTEGNTPLHLACDEE 183
Query: 639 YTSIIQLLLDHGANPTLENKRKVTPLQNANN 669
+ L+ GA+ +ENK + TPLQ A
Sbjct: 184 RVEEAKFLVTQGASIYIENKEEKTPLQVAKG 214
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 72/141 (51%), Gaps = 3/141 (2%)
Query: 787 ESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLH 846
E + R + D+ L + D TALH A S GH ++V L+ +N +PLH
Sbjct: 21 ELKERILADKSLATRT-DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG-WSPLH 78
Query: 847 IACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNH 906
IA IV+ LL K +VNA + G T LHYAA N +A +LL+ GA P K+H
Sbjct: 79 IAASAGRDEIVKALLV-KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH 137
Query: 907 YGQTCLHMAQQMTSLSLVRVL 927
Y T +H A +L +V +L
Sbjct: 138 YDATAMHRAAAKGNLKMVHIL 158
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 2/132 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++N N +G T LH A S +++ +L+ A+ + T +H A NL +V
Sbjct: 98 HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA-TAMHRAAAKGNLKMVH 156
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
+LL K + N QD GNT LH A A L+ GA I+N +T L +A+
Sbjct: 157 ILLFYK-ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGG 215
Query: 919 TSLSLVRVLTHE 930
L L R+ E
Sbjct: 216 LGLILKRLAEGE 227
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 89.0 bits (219), Expect = 1e-17, Method: Composition-based stats.
Identities = 50/130 (38%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
AA G+ V +++ GAD N+ D G +PLH AA GH ++ +LL GA +N DN G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLD 648
T LHLA +NGH V+ L+ ++NA + +G +PLH AA G+ I+++LL
Sbjct: 81 ATPLHLAADNGHLEIVEVLLKHGA------DVNAKDYEGFTPLHLAAYDGHLEIVEVLLK 134
Query: 649 HGANPTLENK 658
+GA+ ++K
Sbjct: 135 YGADVNAQDK 144
Score = 82.8 bits (203), Expect = 8e-16, Method: Composition-based stats.
Identities = 51/153 (33%), Positives = 81/153 (52%), Gaps = 5/153 (3%)
Query: 775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
L + A+ +D E R + ++N + G+T LH+A GH ++V +L+ Y AD+N
Sbjct: 18 LLEAARAGQD---DEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVN 74
Query: 835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
TPLH+A N +L IV +LL +VNA+DY G T LH AA + H + +L
Sbjct: 75 AWDNYGA-TPLHLAADNGHLEIVEVLLK-HGADVNAKDYEGFTPLHLAAYDGHLEIVEVL 132
Query: 895 LKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
LK GA ++ +G+T ++ + L +L
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 79.0 bits (193), Expect = 1e-14, Method: Composition-based stats.
Identities = 39/89 (43%), Positives = 57/89 (64%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
G T LH+AA G +++V+++L+ GAD N+ D G +PLH AA GH ++ +LL GA +
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADV 106
Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYF 610
N D EG T LHLA +GH V+ L+ +
Sbjct: 107 NAKDYEGFTPLHLAAYDGHLEIVEVLLKY 135
Score = 75.5 bits (184), Expect = 1e-13, Method: Composition-based stats.
Identities = 53/157 (33%), Positives = 82/157 (52%), Gaps = 8/157 (5%)
Query: 459 KLFEFARLGDGDKVRAILQEENKKEDSESL---PLCHPLCSCDDCE-EAINLKHSQSKPT 514
KL E AR G D+VR ++ ++ L PL H E + LK+
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNATDWLGHTPL-HLAAKTGHLEIVEVLLKYGAD--- 72
Query: 515 TQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLL 574
+ D+ G T LH+AA G +++V+++L+ GAD N++D G +PLH AA GH ++ +L
Sbjct: 73 VNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVL 132
Query: 575 LHSGASINLTDNEGNTALHLATNNGHETCVKALIYFN 611
L GA +N D G TA ++ +NG+E + L N
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 70.5 bits (171), Expect = 4e-12, Method: Composition-based stats.
Identities = 42/121 (34%), Positives = 67/121 (55%), Gaps = 9/121 (7%)
Query: 562 AATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNIN 621
AA G + + +L+ +GA +N TD G+T LHLA GH V+ L+ + ++N
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGA------DVN 74
Query: 622 AVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLLNA 678
A +N G +PLH AA G+ I+++LL HGA+ ++ TPL A +L + ++L
Sbjct: 75 AWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLK 134
Query: 679 Y 679
Y
Sbjct: 135 Y 135
Score = 60.5 bits (145), Expect = 4e-09, Method: Composition-based stats.
Identities = 36/98 (36%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++N ++ G T LH+A GH ++V +L+ + AD+N + TPLH+A + +L IV
Sbjct: 72 DVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVN-AKDYEGFTPLHLAAYDGHLEIVE 130
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK 896
+LL +VNAQD G TA + N + +LA +L K
Sbjct: 131 VLLKYG-ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 88.6 bits (218), Expect = 2e-17, Method: Composition-based stats.
Identities = 49/130 (37%), Positives = 75/130 (57%), Gaps = 6/130 (4%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
AA G+ V +++ GAD N++D G +PLH AA GH ++ +LL +GA +N D +G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLD 648
T LHLA GH V+ L+ ++NA + G +PLH AAR G+ I+++LL
Sbjct: 81 YTPLHLAAREGHLEIVEVLLK------AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 134
Query: 649 HGANPTLENK 658
GA+ ++K
Sbjct: 135 AGADVNAQDK 144
Score = 82.8 bits (203), Expect = 9e-16, Method: Composition-based stats.
Identities = 39/90 (43%), Positives = 59/90 (65%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D G+T LH+AA G +++V+++L+ GAD N++D G +PLH AA GH ++ +LL +G
Sbjct: 44 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 103
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALI 608
A +N D +G T LHLA GH V+ L+
Sbjct: 104 ADVNAKDKDGYTPLHLAAREGHLEIVEVLL 133
Score = 82.4 bits (202), Expect = 1e-15, Method: Composition-based stats.
Identities = 51/152 (33%), Positives = 85/152 (55%), Gaps = 6/152 (3%)
Query: 459 KLFEFARLGDGDKVRAILQ---EENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTT 515
KL E AR G D+VR ++ + N K+ PL L + + E + + ++
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAKDKDGYTPL--HLAAREGHLEIVEVL-LKAGADV 73
Query: 516 QSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLL 575
+ D G+T LH+AA G +++V+++L+ GAD N++D G +PLH AA GH ++ +LL
Sbjct: 74 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 133
Query: 576 HSGASINLTDNEGNTALHLATNNGHETCVKAL 607
+GA +N D G TA ++ +NG+E + L
Sbjct: 134 KAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 82.0 bits (201), Expect = 1e-15, Method: Composition-based stats.
Identities = 51/153 (33%), Positives = 82/153 (53%), Gaps = 5/153 (3%)
Query: 775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
L + A+ +D E R + ++N + DGYT LH+A GH ++V +L+ AD+N
Sbjct: 18 LLEAARAGQD---DEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 74
Query: 835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
+ TPLH+A + +L IV +LL A +VNA+D G T LH AA H + +L
Sbjct: 75 AKDK-DGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVL 132
Query: 895 LKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
LK+GA ++ +G+T ++ + L +L
Sbjct: 133 LKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 66.6 bits (161), Expect = 6e-11, Method: Composition-based stats.
Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 6/106 (5%)
Query: 562 AATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNIN 621
AA G + + +L+ +GA +N D +G T LHLA GH V+ L+ ++N
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK------AGADVN 74
Query: 622 AVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
A + G +PLH AAR G+ I+++LL GA+ ++K TPL A
Sbjct: 75 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLA 120
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 88.2 bits (217), Expect = 2e-17, Method: Composition-based stats.
Identities = 54/151 (35%), Positives = 85/151 (56%), Gaps = 9/151 (5%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
AA GR V +++ GAD N+ D+ G +PLH AA GH ++ +LL +GA +N D G
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG 80
Query: 589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLD 648
+T LHLA + GH V+ L+ ++NA ++ G +PLH AA G+ I+++LL
Sbjct: 81 STPLHLAAHFGHLEIVEVLLKNGA------DVNAKDDNGITPLHLAANRGHLEIVEVLLK 134
Query: 649 HGANPTLENKRKVTPLQ---NANNLHVAKLL 676
+GA+ ++K T N N +A++L
Sbjct: 135 YGADVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 84.0 bits (206), Expect = 4e-16, Method: Composition-based stats.
Identities = 45/130 (34%), Positives = 75/130 (57%), Gaps = 6/130 (4%)
Query: 517 SMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLH 576
+ D G+T LH+AA +G +++V+++L+ GAD N+ D G +PLH AA GH ++ +LL
Sbjct: 42 AADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLK 101
Query: 577 SGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAAR 636
+GA +N D+ G T LHLA N GH V+ L+ + ++NA + G + +
Sbjct: 102 NGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGA------DVNAQDKFGKTAFDISIN 155
Query: 637 WGYTSIIQLL 646
G + ++L
Sbjct: 156 NGNEDLAEIL 165
Score = 79.7 bits (195), Expect = 8e-15, Method: Composition-based stats.
Identities = 39/95 (41%), Positives = 60/95 (63%)
Query: 517 SMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLH 576
+ D G T LH+AA +G +++V+++L+ GAD N++D G +PLH AA RGH ++ +LL
Sbjct: 75 AYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLK 134
Query: 577 SGASINLTDNEGNTALHLATNNGHETCVKALIYFN 611
GA +N D G TA ++ NNG+E + L N
Sbjct: 135 YGADVNAQDKFGKTAFDISINNGNEDLAEILQKLN 169
Score = 72.0 bits (175), Expect = 2e-12, Method: Composition-based stats.
Identities = 45/141 (31%), Positives = 73/141 (51%), Gaps = 2/141 (1%)
Query: 787 ESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLH 846
+ E R + ++N + G+T LH+A GH ++V +L+ AD+N + TPLH
Sbjct: 27 DDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGS-TPLH 85
Query: 847 IACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNH 906
+A +L IV +LL +VNA+D G T LH AA H + +LLK GA ++
Sbjct: 86 LAAHFGHLEIVEVLLK-NGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDK 144
Query: 907 YGQTCLHMAQQMTSLSLVRVL 927
+G+T ++ + L +L
Sbjct: 145 FGKTAFDISINNGNEDLAEIL 165
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/114 (40%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
Query: 814 ATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDY 873
A G D VR+L+ AD+N V TPLH+A +L IV +LL +VNA D
Sbjct: 21 AARAGRDDEVRILMANGADVN-AADVVGWTPLHLAAYWGHLEIVEVLLK-NGADVNAYDT 78
Query: 874 RGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
G+T LH AA H + +LLK+GA K+ G T LH+A L +V VL
Sbjct: 79 LGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVL 132
Score = 59.3 bits (142), Expect = 8e-09, Method: Composition-based stats.
Identities = 36/98 (36%), Positives = 55/98 (56%), Gaps = 2/98 (2%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++N ++ G T LH+A GH ++V +L+ AD+N +TPLH+A +L IV
Sbjct: 72 DVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVN-AKDDNGITPLHLAANRGHLEIVE 130
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK 896
+LL +VNAQD G TA + N + +LA +L K
Sbjct: 131 VLLKYG-ADVNAQDKFGKTAFDISINNGNEDLAEILQK 167
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 87.4 bits (215), Expect = 3e-17, Method: Composition-based stats.
Identities = 53/151 (35%), Positives = 83/151 (54%), Gaps = 6/151 (3%)
Query: 459 KLFEFARLGDGDKVRAILQ---EENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTT 515
KL E AR G D+VR ++ + N +++ PL S + LKH
Sbjct: 17 KLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGAD---V 73
Query: 516 QSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLL 575
+ D GFT LH+AA+ G +++V+++L+ GAD N+ D+ G +PLH AA GH ++ +LL
Sbjct: 74 DAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLL 133
Query: 576 HSGASINLTDNEGNTALHLATNNGHETCVKA 606
GA +N D G TA ++ +NG+E K+
Sbjct: 134 KYGADVNAQDKFGKTAFDISIDNGNEDLAKS 164
Score = 83.6 bits (205), Expect = 5e-16, Method: Composition-based stats.
Identities = 47/130 (36%), Positives = 73/130 (56%), Gaps = 6/130 (4%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
AA G+ V +++ GAD N+ D G +PLH AA GH ++ +LL GA ++ D G
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG 80
Query: 589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLD 648
T LHLA GH V+ L+ + ++NA + G +PLH AA G+ I+++LL
Sbjct: 81 FTPLHLAAMTGHLEIVEVLLKYGA------DVNAFDMTGSTPLHLAADEGHLEIVEVLLK 134
Query: 649 HGANPTLENK 658
+GA+ ++K
Sbjct: 135 YGADVNAQDK 144
Score = 81.6 bits (200), Expect = 2e-15, Method: Composition-based stats.
Identities = 38/94 (40%), Positives = 63/94 (67%)
Query: 517 SMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLH 576
++D+ G T LH+AA+ G +++V+++L+ GAD ++ D+ G +PLH AA GH ++ +LL
Sbjct: 42 AVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLK 101
Query: 577 SGASINLTDNEGNTALHLATNNGHETCVKALIYF 610
GA +N D G+T LHLA + GH V+ L+ +
Sbjct: 102 YGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKY 135
Score = 74.3 bits (181), Expect = 3e-13, Method: Composition-based stats.
Identities = 46/141 (32%), Positives = 75/141 (53%), Gaps = 5/141 (3%)
Query: 775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
L + A+ +D E R + ++N ++ G T LH+A GH ++V +L+ + AD++
Sbjct: 18 LLEAARAGQD---DEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVD 74
Query: 835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
V TPLH+A +L IV +LL +VNA D G+T LH AA H + +L
Sbjct: 75 -AADVYGFTPLHLAAMTGHLEIVEVLLKYG-ADVNAFDMTGSTPLHLAADEGHLEIVEVL 132
Query: 895 LKSGARPQIKNHYGQTCLHMA 915
LK GA ++ +G+T ++
Sbjct: 133 LKYGADVNAQDKFGKTAFDIS 153
Score = 67.8 bits (164), Expect = 3e-11, Method: Composition-based stats.
Identities = 46/114 (40%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
Query: 814 ATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDY 873
A G D VR+LI AD+N V LTPLH+A + +L IV +LL +V+A D
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTG-LTPLHLAAVSGHLEIVEVLLK-HGADVDAADV 78
Query: 874 RGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
G T LH AA+ H + +LLK GA + G T LH+A L +V VL
Sbjct: 79 YGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVL 132
Score = 59.7 bits (143), Expect = 7e-09, Method: Composition-based stats.
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 9/121 (7%)
Query: 562 AATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNIN 621
AA G + + +L+ +GA +N DN G T LHLA +GH V+ L+ +++
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGA------DVD 74
Query: 622 AVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLLNA 678
A + G +PLH AA G+ I+++LL +GA+ + TPL A +L + ++L
Sbjct: 75 AADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLK 134
Query: 679 Y 679
Y
Sbjct: 135 Y 135
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 807 GYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQC 866
G+T LH+A GH ++V +L+ Y AD+N TPLH+A +L IV +LL
Sbjct: 80 GFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGS-TPLHLAADEGHLEIVEVLLKYG-A 137
Query: 867 NVNAQDYRGNTALHYAAINNHTNLA 891
+VNAQD G TA + N + +LA
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 87.0 bits (214), Expect = 4e-17, Method: Composition-based stats.
Identities = 48/130 (36%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
AA G+ V +++ GAD N++D G +PLH AA GH ++ +LL +GA +N D G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLD 648
+T LHLA GH V+ L+ + ++NA + G +PLH AA G+ I+++LL
Sbjct: 81 STPLHLAAKRGHLEIVEVLLKYGA------DVNADDTIGSTPLHLAADTGHLEIVEVLLK 134
Query: 649 HGANPTLENK 658
+GA+ ++K
Sbjct: 135 YGADVNAQDK 144
Score = 82.0 bits (201), Expect = 1e-15, Method: Composition-based stats.
Identities = 40/92 (43%), Positives = 59/92 (64%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D G T LH+AA G +++V+++L+ GAD N+ D G +PLH AA RGH ++ +LL G
Sbjct: 44 DTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYG 103
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYF 610
A +N D G+T LHLA + GH V+ L+ +
Sbjct: 104 ADVNADDTIGSTPLHLAADTGHLEIVEVLLKY 135
Score = 78.6 bits (192), Expect = 2e-14, Method: Composition-based stats.
Identities = 52/153 (33%), Positives = 81/153 (52%), Gaps = 8/153 (5%)
Query: 459 KLFEFARLGDGDKVRAILQ---EENKKEDSESLPLCHPLCSCDDCE-EAINLKHSQSKPT 514
KL E AR G D+VR ++ + N ++ PL H E + LK+
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAEDTYGDTPL-HLAARVGHLEIVEVLLKNGAD--- 72
Query: 515 TQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLL 574
++D G T LH+AA G +++V+++L+ GAD N+ D G +PLH AA GH ++ +L
Sbjct: 73 VNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVL 132
Query: 575 LHSGASINLTDNEGNTALHLATNNGHETCVKAL 607
L GA +N D G TA ++ +NG+E + L
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
Query: 775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
L + A+ +D E R + ++N ++ G T LH+A +GH ++V +L+ AD+N
Sbjct: 18 LLEAARAGQD---DEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVN 74
Query: 835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
+ TPLH+A + +L IV +LL +VNA D G+T LH AA H + +L
Sbjct: 75 ALD-FSGSTPLHLAAKRGHLEIVEVLLKYG-ADVNADDTIGSTPLHLAADTGHLEIVEVL 132
Query: 895 LKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
LK GA ++ +G+T ++ + L +L
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 64.3 bits (155), Expect = 3e-10, Method: Composition-based stats.
Identities = 38/121 (31%), Positives = 66/121 (54%), Gaps = 9/121 (7%)
Query: 562 AATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNIN 621
AA G + + +L+ +GA +N D G+T LHLA GH V+ L+ ++N
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGA------DVN 74
Query: 622 AVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQ---NANNLHVAKLLNA 678
A++ G +PLH AA+ G+ I+++LL +GA+ ++ TPL + +L + ++L
Sbjct: 75 ALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLK 134
Query: 679 Y 679
Y
Sbjct: 135 Y 135
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 87.0 bits (214), Expect = 4e-17, Method: Composition-based stats.
Identities = 48/130 (36%), Positives = 77/130 (59%), Gaps = 6/130 (4%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
AA G+ V +++ GAD N++D G +PLH AA GH ++ +LL +GA +N D+ G
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLD 648
T LHLA GH V+ L+ ++NA ++ G +PLH AA+ G+ I+++LL
Sbjct: 81 VTPLHLAARRGHLEIVEVLLKNGA------DVNASDSHGFTPLHLAAKRGHLEIVEVLLK 134
Query: 649 HGANPTLENK 658
+GA+ ++K
Sbjct: 135 NGADVNAQDK 144
Score = 85.9 bits (211), Expect = 1e-16, Method: Composition-based stats.
Identities = 40/90 (44%), Positives = 62/90 (68%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D G+T LH+AA +G +++V+++L+ GAD N++D G +PLH AA RGH ++ +LL +G
Sbjct: 44 DFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNG 103
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALI 608
A +N +D+ G T LHLA GH V+ L+
Sbjct: 104 ADVNASDSHGFTPLHLAAKRGHLEIVEVLL 133
Score = 79.7 bits (195), Expect = 6e-15, Method: Composition-based stats.
Identities = 54/157 (34%), Positives = 84/157 (53%), Gaps = 8/157 (5%)
Query: 459 KLFEFARLGDGDKVRAILQ---EENKKEDSESLPLCHPLCSCDDCE-EAINLKHSQSKPT 514
KL E AR G D+VR ++ + N ++ + PL H E + LK+
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNARDFTGWTPL-HLAAHFGHLEIVEVLLKNGAD--- 72
Query: 515 TQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLL 574
+ D G T LH+AA G +++V+++L+ GAD N+ D G +PLH AA RGH ++ +L
Sbjct: 73 VNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVL 132
Query: 575 LHSGASINLTDNEGNTALHLATNNGHETCVKALIYFN 611
L +GA +N D G TA ++ +NG+E + L N
Sbjct: 133 LKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 75.5 bits (184), Expect = 1e-13, Method: Composition-based stats.
Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
Query: 775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
L + A+ +D E R + ++N + G+T LH+A GH ++V +L+ AD+N
Sbjct: 18 LLEAARAGQD---DEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVN 74
Query: 835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
+ +TPLH+A + +L IV +LL +VNA D G T LH AA H + +L
Sbjct: 75 AKDSLG-VTPLHLAARRGHLEIVEVLLK-NGADVNASDSHGFTPLHLAAKRGHLEIVEVL 132
Query: 895 LKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
LK+GA ++ +G+T ++ + L +L
Sbjct: 133 LKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/106 (34%), Positives = 58/106 (54%), Gaps = 6/106 (5%)
Query: 562 AATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNIN 621
AA G + + +L+ +GA +N D G T LHLA + GH V+ L+ ++N
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGA------DVN 74
Query: 622 AVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
A ++ G +PLH AAR G+ I+++LL +GA+ + TPL A
Sbjct: 75 AKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLA 120
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/98 (37%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++N +S G T LH+A GH ++V +L+ AD+N + TPLH+A + +L IV
Sbjct: 72 DVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVN-ASDSHGFTPLHLAAKRGHLEIVE 130
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK 896
+LL +VNAQD G TA + N + +LA +L K
Sbjct: 131 VLLK-NGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 86.3 bits (212), Expect = 7e-17, Method: Composition-based stats.
Identities = 42/90 (46%), Positives = 61/90 (67%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D G+T LH+AA +G +++V+++L+ GAD N+ D G +PLH AA RGH V+ +LL +G
Sbjct: 44 DHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNG 103
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALI 608
A +N D+ G T LHLA N GH V+ L+
Sbjct: 104 ADVNANDHNGFTPLHLAANIGHLEIVEVLL 133
Score = 86.3 bits (212), Expect = 7e-17, Method: Composition-based stats.
Identities = 49/130 (37%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
AA G+ V +++ GAD N+ D G +PLH AA GH ++ +LL +GA +N D+ G
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLD 648
T LHLA + GH V+ L+ ++NA ++ G +PLH AA G+ I+++LL
Sbjct: 81 VTPLHLAADRGHLEVVEVLLKNGA------DVNANDHNGFTPLHLAANIGHLEIVEVLLK 134
Query: 649 HGANPTLENK 658
HGA+ ++K
Sbjct: 135 HGADVNAQDK 144
Score = 72.8 bits (177), Expect = 8e-13, Method: Composition-based stats.
Identities = 47/153 (30%), Positives = 79/153 (51%), Gaps = 5/153 (3%)
Query: 775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
L + A+ +D E R + ++N + G+T LH+A GH ++V +L+ AD+N
Sbjct: 18 LLEAARAGQD---DEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVN 74
Query: 835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
+ +TPLH+A +L +V +LL +VNA D+ G T LH AA H + +L
Sbjct: 75 ADDSLG-VTPLHLAADRGHLEVVEVLLK-NGADVNANDHNGFTPLHLAANIGHLEIVEVL 132
Query: 895 LKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
LK GA ++ +G+T ++ + L +L
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 72.8 bits (177), Expect = 9e-13, Method: Composition-based stats.
Identities = 54/157 (34%), Positives = 80/157 (50%), Gaps = 8/157 (5%)
Query: 459 KLFEFARLGDGDKVRAILQ---EENKKEDSESLPLCHPLCSCDDCE-EAINLKHSQSKPT 514
KL E AR G D+VR ++ + N + PL H E + LK+
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNASDHVGWTPL-HLAAYFGHLEIVEVLLKNGAD--- 72
Query: 515 TQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLL 574
+ D G T LH+AA G ++VV+++L+ GAD N+ D G +PLH AA GH ++ +L
Sbjct: 73 VNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVL 132
Query: 575 LHSGASINLTDNEGNTALHLATNNGHETCVKALIYFN 611
L GA +N D G TA ++ +NG+E + L N
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 59.7 bits (143), Expect = 7e-09, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 6/109 (5%)
Query: 562 AATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNIN 621
AA G + + +L+ +GA +N +D+ G T LHLA GH V+ L+ ++N
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGA------DVN 74
Query: 622 AVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNL 670
A ++ G +PLH AA G+ ++++LL +GA+ + TPL A N+
Sbjct: 75 ADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANI 123
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/98 (37%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++N +S G T LH+A GH ++V +L+ AD+N TPLH+A +L IV
Sbjct: 72 DVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVN-ANDHNGFTPLHLAANIGHLEIVE 130
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK 896
+LL +VNAQD G TA + N + +LA +L K
Sbjct: 131 VLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 82/151 (54%), Gaps = 6/151 (3%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
DD G++ LH+AA G ++V +L GA N+ + GC+PLHYAA++ + ++LL G
Sbjct: 70 DDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
A+ + D+ TA+H A G+ V L+++ + N + +G++PLH A
Sbjct: 130 ANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA------STNIQDTEGNTPLHLACDEE 183
Query: 639 YTSIIQLLLDHGANPTLENKRKVTPLQNANN 669
+ L+ GA+ +ENK + TPLQ A
Sbjct: 184 RVEEAKFLVTQGASIYIENKEEKTPLQVAKG 214
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 72/141 (51%), Gaps = 3/141 (2%)
Query: 787 ESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLH 846
E + R + D+ L + D TALH A S GH ++V L+ +N +PLH
Sbjct: 21 ELKERILADKSLATRT-DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG-WSPLH 78
Query: 847 IACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNH 906
IA IV+ LL K +VNA + G T LHYAA N +A +LL+ GA P K+H
Sbjct: 79 IAASAGXDEIVKALLV-KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH 137
Query: 907 YGQTCLHMAQQMTSLSLVRVL 927
Y T +H A +L +V +L
Sbjct: 138 YDATAMHRAAAKGNLKMVHIL 158
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 2/132 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++N N +G T LH A S +++ +L+ A+ + T +H A NL +V
Sbjct: 98 HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA-TAMHRAAAKGNLKMVH 156
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
+LL K + N QD GNT LH A A L+ GA I+N +T L +A+
Sbjct: 157 ILLFYK-ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGG 215
Query: 919 TSLSLVRVLTHE 930
L L R+ E
Sbjct: 216 LGLILKRLAEGE 227
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 85.9 bits (211), Expect = 9e-17, Method: Composition-based stats.
Identities = 45/87 (51%), Positives = 56/87 (64%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
G T LH+AA G ++VV L+LE GAD N++D G +PLH AA GH V+ LLL +GA +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 582 NLTDNEGNTALHLATNNGHETCVKALI 608
N D G T LHLA NGH VK L+
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 80.1 bits (196), Expect = 6e-15, Method: Composition-based stats.
Identities = 43/97 (44%), Positives = 57/97 (58%), Gaps = 6/97 (6%)
Query: 555 GCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQE 614
G +PLH AA GH V+ LLL +GA +N D G T LHLA NGH VK L+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE----- 56
Query: 615 VLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGA 651
++NA + G +PLH AAR G+ +++LLL+ GA
Sbjct: 57 -AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 75.9 bits (185), Expect = 1e-13, Method: Composition-based stats.
Identities = 42/94 (44%), Positives = 61/94 (64%), Gaps = 2/94 (2%)
Query: 806 DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQ 865
+G T LH+A GH ++V+LL+ AD+N + + TPLH+A +N +L +V+LLL A
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNGHLEVVKLLLEAG- 58
Query: 866 CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
+VNA+D G T LH AA N H + LLL++GA
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 70.5 bits (171), Expect = 4e-12, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 843 TPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQ 902
TPLH+A +N +L +V+LLL A +VNA+D G T LH AA N H + LLL++GA
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 903 IKNHYGQTCLHMAQQMTSLSLVRVLTHEAPF 933
K+ G+T LH+A + L +V++L +
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93
Score = 61.2 bits (147), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/61 (52%), Positives = 41/61 (67%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D G T LH+AA G ++VV L+LE GAD N++D G +PLH AA GH V+ LLL +G
Sbjct: 32 DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Query: 579 A 579
A
Sbjct: 92 A 92
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 588 GNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLL 647
G T LHLA NGH VK L+ ++NA + G +PLH AAR G+ +++LLL
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLE------AGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 55
Query: 648 DHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
+ GA+ ++K TPL A +L V KLL
Sbjct: 56 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++N + +G T LH+A GH ++V+LL+ AD+N + + TPLH+A +N +L +V+
Sbjct: 27 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNGHLEVVK 85
Query: 859 LLLAA 863
LLL A
Sbjct: 86 LLLEA 90
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 875 GNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
G T LH AA N H + LLL++GA K+ G+T LH+A + L +V++L
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 85.9 bits (211), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 80/151 (52%), Gaps = 7/151 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGA-DTNSQDLCGCSPLHYAATRGHQNVLLLLLHS 577
D G T LH+AA G +VV +L G D N QD G +P+ +A H +++ LLL
Sbjct: 74 DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK 133
Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
G+ IN+ DNE N LH A +G + L+ +++AVN GDSPLH AAR
Sbjct: 134 GSDINIRDNEENICLHWAAFSGCVDIAEILL------AAKCDLHAVNIHGDSPLHIAARE 187
Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNAN 668
+ L L ++ TL+NK TPLQ A+
Sbjct: 188 NRYDCVVLFLSRDSDVTLKNKEGETPLQCAS 218
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 106/223 (47%), Gaps = 8/223 (3%)
Query: 713 SDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNAC 772
++ +I ++ V+ G +E ++ L ENN ++ +K Y + P +A
Sbjct: 19 AEAGHVDICHMLVQAGANIDTCSEDQRTP-LMEAAENNHLEAVK-YLIKAGALVDPKDAE 76
Query: 773 HPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRAD 832
C K+ E +++ +++N + G+T + AT H DLV+LL++ +D
Sbjct: 77 GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD 136
Query: 833 INIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLAT 892
INI + + LH A + + I +LLAAK C+++A + G++ LH AA N +
Sbjct: 137 INIRDNEENIC-LHWAAFSGCVDIAEILLAAK-CDLHAVNIHGDSPLHIAARENRYDCVV 194
Query: 893 LLLKSGARPQIKNHYGQTCLHMA----QQMTSLSLVRVLTHEA 931
L L + +KN G+T L A Q ++L + + L A
Sbjct: 195 LFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQDSA 237
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 526 LHVAALYGRIKVVDLVLELGA--DTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINL 583
LH AA G + + ++++ GA DT S+D +PL AA H + L+ +GA ++
Sbjct: 15 LHAAAEAGHVDICHMLVQAGANIDTCSED--QRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 584 TDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSII 643
D EG+T LHLA GH V+ L+ + +++N ++ G +P+ A + + ++
Sbjct: 73 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQ-----MDVNCQDDGGWTPMIWATEYKHVDLV 127
Query: 644 QLLLDHGAN 652
+LLL G++
Sbjct: 128 KLLLSKGSD 136
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 74/135 (54%), Gaps = 4/135 (2%)
Query: 804 NSDGYTALHIATSLGHYDLVR-LLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLA 862
+++G T LH+A GHY++V+ LL N + D+N TP+ A + ++ +V+LLL+
Sbjct: 74 DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDD-GGWTPMIWATEYKHVDLVKLLLS 132
Query: 863 AKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLS 922
K ++N +D N LH+AA + ++A +LL + N +G + LH+A +
Sbjct: 133 -KGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYD 191
Query: 923 -LVRVLTHEAPFVLK 936
+V L+ ++ LK
Sbjct: 192 CVVLFLSRDSDVTLK 206
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 3/131 (2%)
Query: 798 LNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIV 857
+N + + + + LH A GH D+ +L+ A+I+ + Q TPL A +NN+L V
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSE-DQRTPLMEAAENNHLEAV 60
Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARP-QIKNHYGQTCLHMAQ 916
+ L+ A V+ +D G+T LH AA H + LL +G ++ G T + A
Sbjct: 61 KYLIKAGAL-VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT 119
Query: 917 QMTSLSLVRVL 927
+ + LV++L
Sbjct: 120 EYKHVDLVKLL 130
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 557 SPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVL 616
SPLH AA GH ++ +L+ +GA+I+ + T L A N H VK LI
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL--- 69
Query: 617 NLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHG 650
++ + +G + LH AA+ G+ ++Q LL +G
Sbjct: 70 ---VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNG 100
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%)
Query: 526 LHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTD 585
LH AA G + + +++L D ++ ++ G SPLH AA + ++L L + + L +
Sbjct: 148 LHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKN 207
Query: 586 NEGNTALHLATNN 598
EG T L A+ N
Sbjct: 208 KEGETPLQCASLN 220
Score = 36.6 bits (83), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 92/233 (39%), Gaps = 29/233 (12%)
Query: 629 SPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLLNAYVHKPKP 685
SPLHAAA G+ I +L+ GAN ++ + TPL A N+L K
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVK----------- 61
Query: 686 LYNYLVPKEKVSRPPSPPPTQDKYL----DYSDVNEANISNVNVREGVRPRNITEIKKVE 741
YL+ + P + +L + +V + +SN G N +
Sbjct: 62 ---YLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSN-----GQMDVNCQDDGGWT 113
Query: 742 QLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNIN 801
+ E + L+K ++ + DN +C V+ + +C +++
Sbjct: 114 PMIWATEYKHVDLVKLLLSKGSDINIRDNE-ENICLHWAAFSGCVDIAEILLAAKC-DLH 171
Query: 802 ICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNL 854
N G + LHIA YD V L ++ +D+ + + + TPL A N+ +
Sbjct: 172 AVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGE-TPLQCASLNSQV 223
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 85.1 bits (209), Expect = 2e-16, Method: Composition-based stats.
Identities = 46/130 (35%), Positives = 73/130 (56%), Gaps = 6/130 (4%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
AA G+ V +++ GAD N+ D G +PLH GH ++ +LL A +N +D G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
Query: 589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLD 648
T LHLA GH V+ L+ + ++NA++ QG +PLH AA G+ I+++LL
Sbjct: 81 WTPLHLAAYRGHLEIVEVLLKYGA------DVNAMDYQGYTPLHLAAEDGHLEIVEVLLK 134
Query: 649 HGANPTLENK 658
+GA+ ++K
Sbjct: 135 YGADVNAQDK 144
Score = 78.6 bits (192), Expect = 2e-14, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 6/156 (3%)
Query: 459 KLFEFARLGDGDKVRAILQE--ENKKEDSESLPLCHPLCSCDDCEE-AINLKHSQSKPTT 515
KL E AR G D+VR ++ + D + H + + E + LK++
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAAD---V 73
Query: 516 QSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLL 575
+ D G+T LH+AA G +++V+++L+ GAD N+ D G +PLH AA GH ++ +LL
Sbjct: 74 NASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLL 133
Query: 576 HSGASINLTDNEGNTALHLATNNGHETCVKALIYFN 611
GA +N D G TA ++ +NG+E + L N
Sbjct: 134 KYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 75.9 bits (185), Expect = 9e-14, Method: Composition-based stats.
Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
Query: 775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
L + A+ +D E R + ++N + G T LH+ + GH +++ +L+ Y AD+N
Sbjct: 18 LLEAARAGQD---DEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVN 74
Query: 835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
+ TPLH+A +L IV +LL +VNA DY+G T LH AA + H + +L
Sbjct: 75 ASDK-SGWTPLHLAAYRGHLEIVEVLLKYG-ADVNAMDYQGYTPLHLAAEDGHLEIVEVL 132
Query: 895 LKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
LK GA ++ +G+T ++ + L +L
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 66.6 bits (161), Expect = 5e-11, Method: Composition-based stats.
Identities = 37/98 (37%), Positives = 59/98 (60%), Gaps = 2/98 (2%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++N + G+T LH+A GH ++V +L+ Y AD+N + + TPLH+A ++ +L IV
Sbjct: 72 DVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMD-YQGYTPLHLAAEDGHLEIVE 130
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK 896
+LL +VNAQD G TA + N + +LA +L K
Sbjct: 131 VLLKYG-ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 63.5 bits (153), Expect = 5e-10, Method: Composition-based stats.
Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 9/121 (7%)
Query: 562 AATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNIN 621
AA G + + +L+ +GA +N D G T LHL NNGH ++ L+ + ++N
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAA------DVN 74
Query: 622 AVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLLNA 678
A + G +PLH AA G+ I+++LL +GA+ + + TPL A +L + ++L
Sbjct: 75 ASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLK 134
Query: 679 Y 679
Y
Sbjct: 135 Y 135
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 84.7 bits (208), Expect = 2e-16, Method: Composition-based stats.
Identities = 48/130 (36%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
AA GR V +++ GAD N++D G +PLH AA GH ++ +LL +GA +N D+ G
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLD 648
T L LA GH V+ L+ ++NA + +G +PLH AA +G+ I+++LL
Sbjct: 81 MTPLRLAALFGHLEIVEVLLKNGA------DVNANDMEGHTPLHLAAMFGHLEIVEVLLK 134
Query: 649 HGANPTLENK 658
+GA+ ++K
Sbjct: 135 NGADVNAQDK 144
Score = 81.3 bits (199), Expect = 2e-15, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 88/156 (56%), Gaps = 6/156 (3%)
Query: 459 KLFEFARLGDGDKVRAILQ---EENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTT 515
KL E AR G D+VR ++ + N ++ S PL L + + E + + ++
Sbjct: 17 KLLEAARAGRDDEVRILMANGADVNAEDASGWTPL--HLAAFNGHLEIVEVL-LKNGADV 73
Query: 516 QSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLL 575
++D G T L +AAL+G +++V+++L+ GAD N+ D+ G +PLH AA GH ++ +LL
Sbjct: 74 NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLL 133
Query: 576 HSGASINLTDNEGNTALHLATNNGHETCVKALIYFN 611
+GA +N D G TA ++ +NG+E + L N
Sbjct: 134 KNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 73.9 bits (180), Expect = 4e-13, Method: Composition-based stats.
Identities = 45/141 (31%), Positives = 76/141 (53%), Gaps = 2/141 (1%)
Query: 787 ESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLH 846
+ E R + ++N ++ G+T LH+A GH ++V +L+ AD+N V +TPL
Sbjct: 27 DDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG-MTPLR 85
Query: 847 IACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNH 906
+A +L IV +LL +VNA D G+T LH AA+ H + +LLK+GA ++
Sbjct: 86 LAALFGHLEIVEVLLK-NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDK 144
Query: 907 YGQTCLHMAQQMTSLSLVRVL 927
+G+T ++ + L +L
Sbjct: 145 FGKTAFDISIDNGNEDLAEIL 165
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 44/114 (38%), Positives = 59/114 (51%), Gaps = 2/114 (1%)
Query: 814 ATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDY 873
A G D VR+L+ AD+N TPLH+A N +L IV +LL +VNA D+
Sbjct: 21 AARAGRDDEVRILMANGADVN-AEDASGWTPLHLAAFNGHLEIVEVLLK-NGADVNAVDH 78
Query: 874 RGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
G T L AA+ H + +LLK+GA + G T LH+A L +V VL
Sbjct: 79 AGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVL 132
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 37/106 (34%), Positives = 58/106 (54%), Gaps = 6/106 (5%)
Query: 562 AATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNIN 621
AA G + + +L+ +GA +N D G T LHLA NGH V+ L+ ++N
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA------DVN 74
Query: 622 AVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
AV++ G +PL AA +G+ I+++LL +GA+ + TPL A
Sbjct: 75 AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLA 120
Score = 56.2 bits (134), Expect = 9e-08, Method: Composition-based stats.
Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++N + G T L +A GH ++V +L+ AD+N ++ TPLH+A +L IV
Sbjct: 72 DVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN-ANDMEGHTPLHLAAMFGHLEIVE 130
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK 896
+LL +VNAQD G TA + N + +LA +L K
Sbjct: 131 VLLK-NGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 83.2 bits (204), Expect = 7e-16, Method: Composition-based stats.
Identities = 40/95 (42%), Positives = 62/95 (65%)
Query: 517 SMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLH 576
+MDD G T LH+AA G +++V+++L+ GAD N++D+ G +PLH AAT GH ++ +LL
Sbjct: 42 AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLE 101
Query: 577 SGASINLTDNEGNTALHLATNNGHETCVKALIYFN 611
GA +N D G TA ++ +NG+E + L N
Sbjct: 102 YGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 62.4 bits (150), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/78 (41%), Positives = 45/78 (57%)
Query: 533 GRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTAL 592
G+ V +++ GAD N+ D G +PLH AA RGH ++ +LL GA +N D G T L
Sbjct: 25 GQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPL 84
Query: 593 HLATNNGHETCVKALIYF 610
HLA GH V+ L+ +
Sbjct: 85 HLAATVGHLEIVEVLLEY 102
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Query: 814 ATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDY 873
AT G D VR+L+ AD+N + +TPLH+A + +L IV +LL +VNA+D
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAG-VTPLHLAAKRGHLEIVEVLLK-HGADVNARDI 78
Query: 874 RGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
G T LH AA H + +LL+ GA ++ +G+T ++ + L +L
Sbjct: 79 WGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 60.1 bits (144), Expect = 6e-09, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 59/110 (53%), Gaps = 2/110 (1%)
Query: 787 ESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLH 846
+ E R + ++N + G T LH+A GH ++V +L+ + AD+N + TPLH
Sbjct: 27 DDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN-ARDIWGRTPLH 85
Query: 847 IACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK 896
+A +L IV +LL +VNAQD G TA + N + +LA +L K
Sbjct: 86 LAATVGHLEIVEVLLEYG-ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 7/97 (7%)
Query: 563 ATR-GHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNIN 621
ATR G + + +L+ +GA +N D+ G T LHLA GH V+ L+ ++N
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA------DVN 74
Query: 622 AVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENK 658
A + G +PLH AA G+ I+++LL++GA+ ++K
Sbjct: 75 ARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDK 111
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 619 NINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKL 675
++NA+++ G +PLH AA+ G+ I+++LL HGA+ + TPL A +L + ++
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEV 98
Query: 676 LNAY 679
L Y
Sbjct: 99 LLEY 102
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 82.8 bits (203), Expect = 9e-16, Method: Composition-based stats.
Identities = 51/143 (35%), Positives = 79/143 (55%), Gaps = 7/143 (4%)
Query: 520 DRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGA 579
D G +L AA G+ V +++ GAD N+ D G +PLH AA G ++ +LL +GA
Sbjct: 5 DLGKKLLEAAAA-GQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGA 63
Query: 580 SINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGY 639
+N +D+ G T LHLA +GH V+ L+ ++NA + G +PLH AA G
Sbjct: 64 DVNASDSAGITPLHLAAYDGHLEIVEVLLKHGA------DVNAYDRAGWTPLHLAALSGQ 117
Query: 640 TSIIQLLLDHGANPTLENKRKVT 662
I+++LL HGA+ ++ +T
Sbjct: 118 LEIVEVLLKHGADVNAQDALGLT 140
Score = 80.9 bits (198), Expect = 3e-15, Method: Composition-based stats.
Identities = 47/120 (39%), Positives = 69/120 (57%), Gaps = 5/120 (4%)
Query: 517 SMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLH 576
+ DD G T LH+AA G++++V+++L+ GAD N+ D G +PLH AA GH ++ +LL
Sbjct: 34 ATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLK 93
Query: 577 SGASINLTDNEGNTALHLATNNGHETCVKALIY----FNEQEVLNLNINAVN-NQGDSPL 631
GA +N D G T LHLA +G V+ L+ N Q+ L L ++ NQG L
Sbjct: 94 HGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDL 153
Score = 73.6 bits (179), Expect = 5e-13, Method: Composition-based stats.
Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 6/152 (3%)
Query: 459 KLFEFARLGDGDKVRAILQ---EENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTT 515
KL E A G D+VR ++ + N +D+ PL L + + E + +
Sbjct: 9 KLLEAAAAGQDDEVRILMANGADVNATDDNGLTPL--HLAAANGQLEIVEVLLKNGADVN 66
Query: 516 QSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLL 575
S D G T LH+AA G +++V+++L+ GAD N+ D G +PLH AA G ++ +LL
Sbjct: 67 AS-DSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLL 125
Query: 576 HSGASINLTDNEGNTALHLATNNGHETCVKAL 607
GA +N D G TA ++ N G E + L
Sbjct: 126 KHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 70.9 bits (172), Expect = 4e-12, Method: Composition-based stats.
Identities = 47/114 (41%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
Query: 814 ATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDY 873
A + G D VR+L+ AD+N T LTPLH+A N L IV +LL +VNA D
Sbjct: 13 AAAAGQDDEVRILMANGADVN-ATDDNGLTPLHLAAANGQLEIVEVLLK-NGADVNASDS 70
Query: 874 RGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
G T LH AA + H + +LLK GA + G T LH+A L +V VL
Sbjct: 71 AGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVL 124
Score = 67.4 bits (163), Expect = 3e-11, Method: Composition-based stats.
Identities = 43/141 (30%), Positives = 72/141 (51%), Gaps = 2/141 (1%)
Query: 787 ESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLH 846
+ E R + ++N + +G T LH+A + G ++V +L+ AD+N + +TPLH
Sbjct: 19 DDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVN-ASDSAGITPLH 77
Query: 847 IACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNH 906
+A + +L IV +LL +VNA D G T LH AA++ + +LLK GA ++
Sbjct: 78 LAAYDGHLEIVEVLLK-HGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDA 136
Query: 907 YGQTCLHMAQQMTSLSLVRVL 927
G T ++ L +L
Sbjct: 137 LGLTAFDISINQGQEDLAEIL 157
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/106 (35%), Positives = 59/106 (55%), Gaps = 6/106 (5%)
Query: 562 AATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNIN 621
AA G + + +L+ +GA +N TD+ G T LHLA NG V+ L+ ++N
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGA------DVN 66
Query: 622 AVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
A ++ G +PLH AA G+ I+++LL HGA+ ++ TPL A
Sbjct: 67 ASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLA 112
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 80/158 (50%), Gaps = 9/158 (5%)
Query: 738 KKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPL-CQCAKCKEDVVESESRPVTDE 796
KK+ + A +++E++++ + ++ DN PL A + ++VE + D
Sbjct: 8 KKLLEAAAAGQDDEVRILMA--NGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGAD- 64
Query: 797 CLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSI 856
+N +S G T LH+A GH ++V +L+ + AD+N R TPLH+A + L I
Sbjct: 65 ---VNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAG-WTPLHLAALSGQLEI 120
Query: 857 VRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
V +LL +VNAQD G TA + +LA +L
Sbjct: 121 VEVLL-KHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 82.4 bits (202), Expect = 1e-15, Method: Composition-based stats.
Identities = 40/95 (42%), Positives = 61/95 (64%)
Query: 517 SMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLH 576
+MDD G T LH+AA G +++V+++L+ GAD N+ D+ G +PLH AAT GH ++ +LL
Sbjct: 42 AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLE 101
Query: 577 SGASINLTDNEGNTALHLATNNGHETCVKALIYFN 611
GA +N D G TA ++ +NG+E + L N
Sbjct: 102 YGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 63.5 bits (153), Expect = 6e-10, Method: Composition-based stats.
Identities = 32/78 (41%), Positives = 46/78 (58%)
Query: 533 GRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTAL 592
G+ V +++ GAD N+ D G +PLH AA RGH ++ +LL GA +N +D G T L
Sbjct: 25 GQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPL 84
Query: 593 HLATNNGHETCVKALIYF 610
HLA GH V+ L+ +
Sbjct: 85 HLAATVGHLEIVEVLLEY 102
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
Query: 787 ESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLH 846
+ E R + ++N + G T LH+A GH ++V +L+ + AD+N + + TPLH
Sbjct: 27 DDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN-ASDIWGRTPLH 85
Query: 847 IACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK 896
+A +L IV +LL +VNAQD G TA + N + +LA +L K
Sbjct: 86 LAATVGHLEIVEVLLEYG-ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 60.5 bits (145), Expect = 4e-09, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
Query: 814 ATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDY 873
AT G D VR+L+ AD+N + +TPLH+A + +L IV +LL +VNA D
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAG-VTPLHLAAKRGHLEIVEVLLK-HGADVNASDI 78
Query: 874 RGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
G T LH AA H + +LL+ GA ++ +G+T ++ + L +L
Sbjct: 79 WGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 7/97 (7%)
Query: 563 ATR-GHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNIN 621
ATR G + + +L+ +GA +N D+ G T LHLA GH V+ L+ ++N
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA------DVN 74
Query: 622 AVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENK 658
A + G +PLH AA G+ I+++LL++GA+ ++K
Sbjct: 75 ASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDK 111
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 619 NINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKL 675
++NA+++ G +PLH AA+ G+ I+++LL HGA+ + TPL A +L + ++
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEV 98
Query: 676 LNAY 679
L Y
Sbjct: 99 LLEY 102
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 80.9 bits (198), Expect = 3e-15, Method: Composition-based stats.
Identities = 40/95 (42%), Positives = 60/95 (63%)
Query: 517 SMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLH 576
+MDD G T LH+AA G +++V+++L+ GAD N+ D G +PLH AAT GH ++ +LL
Sbjct: 42 AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLE 101
Query: 577 SGASINLTDNEGNTALHLATNNGHETCVKALIYFN 611
GA +N D G TA ++ +NG+E + L N
Sbjct: 102 YGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/78 (41%), Positives = 47/78 (60%)
Query: 533 GRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTAL 592
G+ V +++ GAD N+ D G +PLH AA RGH ++ +LL GA +N +D+ G T L
Sbjct: 25 GQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPL 84
Query: 593 HLATNNGHETCVKALIYF 610
HLA GH V+ L+ +
Sbjct: 85 HLAATVGHLEIVEVLLEY 102
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 7/97 (7%)
Query: 563 ATR-GHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNIN 621
ATR G + + +L+ +GA +N D+ G T LHLA GH V+ L+ ++N
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA------DVN 74
Query: 622 AVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENK 658
A ++ G +PLH AA G+ I+++LL++GA+ ++K
Sbjct: 75 ASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDK 111
Score = 60.5 bits (145), Expect = 5e-09, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
Query: 814 ATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDY 873
AT G D VR+L+ AD+N + +TPLH+A + +L IV +LL +VNA D
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAG-VTPLHLAAKRGHLEIVEVLLK-HGADVNASDS 78
Query: 874 RGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
G T LH AA H + +LL+ GA ++ +G+T ++ + L +L
Sbjct: 79 WGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 59.3 bits (142), Expect = 9e-09, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 59/110 (53%), Gaps = 2/110 (1%)
Query: 787 ESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLH 846
+ E R + ++N + G T LH+A GH ++V +L+ + AD+N + TPLH
Sbjct: 27 DDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGR-TPLH 85
Query: 847 IACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK 896
+A +L IV +LL +VNAQD G TA + N + +LA +L K
Sbjct: 86 LAATVGHLEIVEVLLEYG-ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 43.1 bits (100), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 619 NINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKL 675
++NA+++ G +PLH AA+ G+ I+++LL HGA+ + TPL A +L + ++
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEV 98
Query: 676 LNAY 679
L Y
Sbjct: 99 LLEY 102
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 80.9 bits (198), Expect = 3e-15, Method: Composition-based stats.
Identities = 38/95 (40%), Positives = 61/95 (64%)
Query: 517 SMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLH 576
++D+ G T LH+AA G +++V+++L+ GAD N++D G +PLH AA RGH ++ +LL
Sbjct: 42 ALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLK 101
Query: 577 SGASINLTDNEGNTALHLATNNGHETCVKALIYFN 611
GA +N D G TA ++ +NG+E + L N
Sbjct: 102 HGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 68.2 bits (165), Expect = 2e-11, Method: Composition-based stats.
Identities = 44/122 (36%), Positives = 66/122 (54%), Gaps = 5/122 (4%)
Query: 775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
L + A+ +D E R + ++N + DG T LH+A LGH ++V +L+ Y AD+N
Sbjct: 18 LLEAARAGQD---DEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVN 74
Query: 835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
+TPLH+A +L IV +LL +VNAQD G TA + N + +LA +L
Sbjct: 75 AEDNFG-ITPLHLAAIRGHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Query: 895 LK 896
K
Sbjct: 133 QK 134
Score = 63.5 bits (153), Expect = 5e-10, Method: Composition-based stats.
Identities = 42/114 (36%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Query: 814 ATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDY 873
A G D VR+L+ AD+N + LTPLH+A Q +L IV +LL +VNA+D
Sbjct: 21 AARAGQDDEVRILMANGADVNALDE-DGLTPLHLAAQLGHLEIVEVLLKYG-ADVNAEDN 78
Query: 874 RGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
G T LH AAI H + +LLK GA ++ +G+T ++ + L +L
Sbjct: 79 FGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 63.2 bits (152), Expect = 8e-10, Method: Composition-based stats.
Identities = 35/97 (36%), Positives = 56/97 (57%), Gaps = 6/97 (6%)
Query: 562 AATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNIN 621
AA G + + +L+ +GA +N D +G T LHLA GH V+ L+ + ++N
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGA------DVN 74
Query: 622 AVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENK 658
A +N G +PLH AA G+ I+++LL HGA+ ++K
Sbjct: 75 AEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDK 111
Score = 59.7 bits (143), Expect = 7e-09, Method: Composition-based stats.
Identities = 34/80 (42%), Positives = 46/80 (57%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
AA G+ V +++ GAD N+ D G +PLH AA GH ++ +LL GA +N DN G
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 589 NTALHLATNNGHETCVKALI 608
T LHLA GH V+ L+
Sbjct: 81 ITPLHLAAIRGHLEIVEVLL 100
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 619 NINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
++NA++ G +PLH AA+ G+ I+++LL +GA+ E+ +TPL A
Sbjct: 39 DVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLA 87
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 78.2 bits (191), Expect = 2e-14, Method: Composition-based stats.
Identities = 44/121 (36%), Positives = 65/121 (53%), Gaps = 6/121 (4%)
Query: 547 DTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKA 606
D N D G SPLH+A G V+ +L+ GA IN+ + +T LHLA ++GH V+
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 90
Query: 607 LIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQN 666
L+ + +INAVN G+ PLH A WG + + L+ +GA ++ NK P+
Sbjct: 91 LLQYKA------DINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDK 144
Query: 667 A 667
A
Sbjct: 145 A 145
Score = 62.0 bits (149), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 49/90 (54%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
DD GF+ LH A GR VV++++ GA N + +PLH AA+ GH++++ LL
Sbjct: 36 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK 95
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALI 608
A IN + GN LH A G + + L+
Sbjct: 96 ADINAVNEHGNVPLHYACFWGQDQVAEDLV 125
Score = 60.1 bits (144), Expect = 5e-09, Method: Composition-based stats.
Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++N + G++ LH A G +V +LI A IN++ R TPLH+A + + IV+
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD-TPLHLAASHGHRDIVQ 89
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQ 916
LL K ++NA + GN LHYA +A L+ +GA I N YG+ + A+
Sbjct: 90 KLLQYK-ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAK 146
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 36/65 (55%)
Query: 524 TVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINL 583
T LH+AA +G +V +L+ AD N+ + G PLHYA G V L+ +GA +++
Sbjct: 74 TPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI 133
Query: 584 TDNEG 588
+ G
Sbjct: 134 CNKYG 138
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 37/79 (46%)
Query: 849 CQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYG 908
C+ N VRL L + ++N D G + LH+A + + +L+ GAR + N
Sbjct: 13 CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD 72
Query: 909 QTCLHMAQQMTSLSLVRVL 927
T LH+A +V+ L
Sbjct: 73 DTPLHLAASHGHRDIVQKL 91
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 78.2 bits (191), Expect = 2e-14, Method: Composition-based stats.
Identities = 44/121 (36%), Positives = 65/121 (53%), Gaps = 6/121 (4%)
Query: 547 DTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKA 606
D N D G SPLH+A G V+ +L+ GA IN+ + +T LHLA ++GH V+
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 85
Query: 607 LIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQN 666
L+ + +INAVN G+ PLH A WG + + L+ +GA ++ NK P+
Sbjct: 86 LLQYKA------DINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDK 139
Query: 667 A 667
A
Sbjct: 140 A 140
Score = 62.0 bits (149), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 49/90 (54%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
DD GF+ LH A GR VV++++ GA N + +PLH AA+ GH++++ LL
Sbjct: 31 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK 90
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALI 608
A IN + GN LH A G + + L+
Sbjct: 91 ADINAVNEHGNVPLHYACFWGQDQVAEDLV 120
Score = 60.1 bits (144), Expect = 6e-09, Method: Composition-based stats.
Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++N + G++ LH A G +V +LI A IN++ R TPLH+A + + IV+
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD-TPLHLAASHGHRDIVQ 84
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQ 916
LL K ++NA + GN LHYA +A L+ +GA I N YG+ + A+
Sbjct: 85 KLLQYK-ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAK 141
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 36/65 (55%)
Query: 524 TVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINL 583
T LH+AA +G +V +L+ AD N+ + G PLHYA G V L+ +GA +++
Sbjct: 69 TPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI 128
Query: 584 TDNEG 588
+ G
Sbjct: 129 CNKYG 133
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 37/79 (46%)
Query: 849 CQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYG 908
C+ N VRL L + ++N D G + LH+A + + +L+ GAR + N
Sbjct: 8 CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD 67
Query: 909 QTCLHMAQQMTSLSLVRVL 927
T LH+A +V+ L
Sbjct: 68 DTPLHLAASHGHRDIVQKL 86
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 49/128 (38%), Positives = 74/128 (57%), Gaps = 1/128 (0%)
Query: 798 LNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIV 857
L++ N DG TALH+A + + V+LL+ ADI+ V +PL A +NN+LS+V
Sbjct: 107 LDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV 166
Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQ 917
+LLL NVNAQ Y G++ALH A+ L L++SGA +KN + T L +A+
Sbjct: 167 QLLL-QHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARS 225
Query: 918 MTSLSLVR 925
+ ++R
Sbjct: 226 RRVIDILR 233
Score = 63.5 bits (153), Expect = 5e-10, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 86/166 (51%), Gaps = 10/166 (6%)
Query: 519 DDRGFTVLHVAALYGRI----KVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLL 574
D+ G T LH+A + G + ++V+L + G + + + +PLH A +V+ LL
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 575 LHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAA 634
+ +GAS D G TA HLA + TC++AL+ + L++ A N G + LH A
Sbjct: 66 VTAGASPMALDRHGQTAAHLACEHRSPTCLRALL--DSAAPGTLDLEARNYDGLTALHVA 123
Query: 635 ARWGYTSIIQLLLDHGAN-PTLENKRKVTPLQNA---NNLHVAKLL 676
+QLLL+ GA+ ++ K +PL +A N+L + +LL
Sbjct: 124 VNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL 169
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 47/172 (27%), Positives = 77/172 (44%), Gaps = 11/172 (6%)
Query: 517 SMDDRGFTVLHVAALYGRIKVVDLVLELGA----DTNSQDLCGCSPLHYAATRGHQNVLL 572
++D G T H+A + + +L+ A D +++ G + LH A Q +
Sbjct: 74 ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQ 133
Query: 573 LLLHSGASINLTD-NEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPL 631
LLL GA I+ D G + L A N + V+ L+ N+NA G S L
Sbjct: 134 LLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGA------NVNAQMYSGSSAL 187
Query: 632 HAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKP 683
H+A+ G +++ L+ GA+ +L+N TPL A + V +L +P
Sbjct: 188 HSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRP 239
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Query: 804 NSDGYTALHIATSLGHYDLVRLLINYRA----DINIVTRVKQLTPLHIACQNNNLSIVRL 859
+ DG T LHIA G+ V L+N +++I ++Q TPLH+A S+VRL
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQ-TPLHLAVITTLPSVVRL 64
Query: 860 LLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQI----KNHYGQTCLHMA 915
L+ A + A D G TA H A + LL S A + +N+ G T LH+A
Sbjct: 65 LVTAGASPM-ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVA 123
Query: 916 QQMTSLSLVRVL 927
V++L
Sbjct: 124 VNTECQETVQLL 135
Score = 46.6 bits (109), Expect = 6e-05, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 843 TPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGN---TALHYAAINNHTNLATLLLKSGA 899
TPLHIA NL V L+ Q D N T LH A I ++ LL+ +GA
Sbjct: 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA 70
Query: 900 RPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEA 931
P + +GQT H+A + S + +R L A
Sbjct: 71 SPMALDRHGQTAAHLACEHRSPTCLRALLDSA 102
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 38/165 (23%)
Query: 800 INICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRL 859
++I N+ T LH+A +VRLL+ A + R Q T H+AC++ + + +R
Sbjct: 39 LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQ-TAAHLACEHRSPTCLRA 97
Query: 860 LL---AAKQCNVNAQDYRGNTALH----------------------------------YA 882
LL A ++ A++Y G TALH +A
Sbjct: 98 LLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHA 157
Query: 883 AINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
NN ++ LLL+ GA + + G + LH A L LVR L
Sbjct: 158 VENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTL 202
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 63/120 (52%), Gaps = 5/120 (4%)
Query: 557 SPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVL 616
+PLH AA RG+ + L L + +N D G+TAL+ A + GH+ V+ L F +
Sbjct: 75 NPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXL--FTQP--- 129
Query: 617 NLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLL 676
N+ +N N GD+ LHAAA GY I+QLLL GA L N K A N A LL
Sbjct: 130 NIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXATNAACASLL 189
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
Query: 811 LHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNA 870
LH A G+ +R ++ R +N + + T L+ AC + IV L +N
Sbjct: 77 LHEAAKRGNLSWLRECLDNRVGVNGLDKAGS-TALYWACHGGHKDIVEXLFTQPNIELNQ 135
Query: 871 QDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVR 925
Q+ G+TALH AA + ++ LLL GAR ++N + A SL++
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXATNAACASLLK 190
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 517 SMDDRGFTVLHVAALYGRIKVVD-LVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLL 575
+D G T L+ A G +V+ L + + N Q+ G + LH AA +G+ +++ LLL
Sbjct: 101 GLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLL 160
Query: 576 HSGASINLTDNEGNTALHLATN 597
GA +L + E A ATN
Sbjct: 161 AKGARTDLRNIEKKLAFDXATN 182
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 791 RPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINY-RADINIVTRVKQLTPLHIAC 849
R D + +N + G TAL+ A GH D+V L ++N ++ T LH A
Sbjct: 90 RECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGD-TALHAAA 148
Query: 850 QNNNLSIVRLLLA 862
IV+LLLA
Sbjct: 149 WKGYADIVQLLLA 161
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 50/149 (33%), Positives = 69/149 (46%), Gaps = 39/149 (26%)
Query: 516 QSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLL 575
+ ++ R T LH AA Y R+ VV+ +L+ GAD +++D G PLH A + GH V LL+
Sbjct: 38 RDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLV 97
Query: 576 HSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAA 635
GA +N+ D L F +PLH AA
Sbjct: 98 KHGAVVNVAD---------------------LWKF------------------TPLHEAA 118
Query: 636 RWGYTSIIQLLLDHGANPTLENKRKVTPL 664
G I +LLL HGA+PT +N+ TPL
Sbjct: 119 AKGKYEICKLLLQHGADPTKKNRDGNTPL 147
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 2/131 (1%)
Query: 786 VESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPL 845
VE+ + T + +N T LH A +V L+ + AD++ + L PL
Sbjct: 23 VETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK-GGLVPL 81
Query: 846 HIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKN 905
H AC + + LL+ VN D T LH AA + LLL+ GA P KN
Sbjct: 82 HNACSYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN 140
Query: 906 HYGQTCLHMAQ 916
G T L + +
Sbjct: 141 RDGNTPLDLVK 151
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 840 KQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
+Q TPLH A N +S+V LL +V+A+D G LH A H +A LL+K GA
Sbjct: 43 RQSTPLHFAAGYNRVSVVEYLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA 101
Query: 900 RPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
+ + + T LH A + ++L
Sbjct: 102 VVNVADLWKFTPLHEAAAKGKYEICKLL 129
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 580 SINLTDNEG--NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
S+N D EG +T LH A + V+ L+ +++A + G PLH A +
Sbjct: 34 SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGA------DVHAKDKGGLVPLHNACSY 87
Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
G+ + +LL+ HGA + + K TPL A
Sbjct: 88 GHYEVAELLVKHGAVVNVADLWKFTPLHEA 117
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 585 DNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQ 644
++E + L A G VK L V ++N + + +PLH AA + S+++
Sbjct: 7 NSEADRQLLEAAKAGDVETVKKLC-----TVQSVNCRDIEGRQSTPLHFAAGYNRVSVVE 61
Query: 645 LLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
LL HGA+ ++K + PL NA + VA+LL
Sbjct: 62 YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELL 96
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 848 ACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHY 907
A + ++ V+ L + N + R +T LH+AA N ++ LL+ GA K+
Sbjct: 17 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG 76
Query: 908 GQTCLHMA 915
G LH A
Sbjct: 77 GLVPLHNA 84
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 71.6 bits (174), Expect = 2e-12, Method: Composition-based stats.
Identities = 50/149 (33%), Positives = 69/149 (46%), Gaps = 39/149 (26%)
Query: 516 QSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLL 575
+ ++ R T LH AA Y R+ VV+ +L+ GAD +++D G PLH A + GH V LL+
Sbjct: 40 RDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLV 99
Query: 576 HSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAA 635
GA +N+ D L F +PLH AA
Sbjct: 100 KHGAVVNVAD---------------------LWKF------------------TPLHEAA 120
Query: 636 RWGYTSIIQLLLDHGANPTLENKRKVTPL 664
G I +LLL HGA+PT +N+ TPL
Sbjct: 121 AKGKYEICKLLLQHGADPTKKNRDGNTPL 149
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 2/131 (1%)
Query: 786 VESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPL 845
VE+ + T + +N T LH A +V L+ + AD++ + L PL
Sbjct: 25 VETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK-GGLVPL 83
Query: 846 HIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKN 905
H AC + + LL+ VN D T LH AA + LLL+ GA P KN
Sbjct: 84 HNACSYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN 142
Query: 906 HYGQTCLHMAQ 916
G T L + +
Sbjct: 143 RDGNTPLDLVK 153
Score = 46.2 bits (108), Expect = 9e-05, Method: Composition-based stats.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 1/130 (0%)
Query: 798 LNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIV 857
+ I++ NS+ L A G + V+ L ++ +Q TPLH A N +S+V
Sbjct: 3 MGISLGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVV 62
Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQ 917
LL +V+A+D G LH A H +A LL+K GA + + + T LH A
Sbjct: 63 EYLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAA 121
Query: 918 MTSLSLVRVL 927
+ ++L
Sbjct: 122 KGKYEICKLL 131
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 581 INLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYT 640
I+L ++E + L A G VK L V ++N + + +PLH AA +
Sbjct: 5 ISLGNSEADRQLLEAAKAGDVETVKKLC-----TVQSVNCRDIEGRQSTPLHFAAGYNRV 59
Query: 641 SIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
S+++ LL HGA+ ++K + PL NA + VA+LL
Sbjct: 60 SVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELL 98
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 580 SINLTDNEG--NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
S+N D EG +T LH A + V+ L+ +++A + G PLH A +
Sbjct: 36 SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGA------DVHAKDKGGLVPLHNACSY 89
Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
G+ + +LL+ HGA + + K TPL A
Sbjct: 90 GHYEVAELLVKHGAVVNVADLWKFTPLHEA 119
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 71.6 bits (174), Expect = 2e-12, Method: Composition-based stats.
Identities = 50/149 (33%), Positives = 69/149 (46%), Gaps = 39/149 (26%)
Query: 516 QSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLL 575
+ ++ R T LH AA Y R+ VV+ +L+ GAD +++D G PLH A + GH V LL+
Sbjct: 36 RDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLV 95
Query: 576 HSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAA 635
GA +N+ D L F +PLH AA
Sbjct: 96 KHGAVVNVAD---------------------LWKF------------------TPLHEAA 116
Query: 636 RWGYTSIIQLLLDHGANPTLENKRKVTPL 664
G I +LLL HGA+PT +N+ TPL
Sbjct: 117 AKGKYEICKLLLQHGADPTKKNRDGNTPL 145
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 2/131 (1%)
Query: 786 VESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPL 845
VE+ + T + +N T LH A +V L+ + AD++ + L PL
Sbjct: 21 VETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK-GGLVPL 79
Query: 846 HIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKN 905
H AC + + LL+ VN D T LH AA + LLL+ GA P KN
Sbjct: 80 HNACSYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN 138
Query: 906 HYGQTCLHMAQ 916
G T L + +
Sbjct: 139 RDGNTPLDLVK 149
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 840 KQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
+Q TPLH A N +S+V LL +V+A+D G LH A H +A LL+K GA
Sbjct: 41 RQSTPLHFAAGYNRVSVVEYLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA 99
Query: 900 RPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
+ + + T LH A + ++L
Sbjct: 100 VVNVADLWKFTPLHEAAAKGKYEICKLL 127
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 580 SINLTDNEG--NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
S+N D EG +T LH A + V+ L+ +++A + G PLH A +
Sbjct: 32 SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGA------DVHAKDKGGLVPLHNACSY 85
Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
G+ + +LL+ HGA + + K TPL A
Sbjct: 86 GHYEVAELLVKHGAVVNVADLWKFTPLHEA 115
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 8/97 (8%)
Query: 583 LTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSI 642
+ ++E + L A G VK L V ++N + + +PLH AA + S+
Sbjct: 3 MGNSEADRQLLEAAKAGDVETVKKLC-----TVQSVNCRDIEGRQSTPLHFAAGYNRVSV 57
Query: 643 IQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
++ LL HGA+ ++K + PL NA + VA+LL
Sbjct: 58 VEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELL 94
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 848 ACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHY 907
A + ++ V+ L + N + R +T LH+AA N ++ LL+ GA K+
Sbjct: 15 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG 74
Query: 908 GQTCLHMA 915
G LH A
Sbjct: 75 GLVPLHNA 82
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 57/93 (61%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D +G T LH+AA Y +++V+++L+ GAD N+ D G +PLH AA GH ++ +LL G
Sbjct: 44 DRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHG 103
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFN 611
A +N D G TA ++ +NG+E + L N
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 65.9 bits (159), Expect = 1e-10, Method: Composition-based stats.
Identities = 35/97 (36%), Positives = 57/97 (58%), Gaps = 6/97 (6%)
Query: 562 AATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNIN 621
AA G + + +L+ +GA +N D +GNT LHLA + H V+ L+ ++N
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGA------DVN 74
Query: 622 AVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENK 658
A +N G +PLH AA +G+ I+++LL HGA+ ++K
Sbjct: 75 AHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDK 111
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 41/114 (35%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Query: 814 ATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDY 873
A G D VR+L+ AD+N R K TPLH+A ++L IV +LL +VNA D
Sbjct: 21 AARAGQDDEVRILMANGADVNANDR-KGNTPLHLAADYDHLEIVEVLLK-HGADVNAHDN 78
Query: 874 RGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
G+T LH AA+ H + +LLK GA ++ +G+T ++ + L +L
Sbjct: 79 DGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/80 (41%), Positives = 47/80 (58%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
AA G+ V +++ GAD N+ D G +PLH AA H ++ +LL GA +N DN+G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG 80
Query: 589 NTALHLATNNGHETCVKALI 608
+T LHLA GH V+ L+
Sbjct: 81 STPLHLAALFGHLEIVEVLL 100
Score = 53.5 bits (127), Expect = 5e-07, Method: Composition-based stats.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 5/122 (4%)
Query: 775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
L + A+ +D E R + ++N + G T LH+A H ++V +L+ + AD+N
Sbjct: 18 LLEAARAGQD---DEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVN 74
Query: 835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
TPLH+A +L IV +LL +VNAQD G TA + N + +LA +L
Sbjct: 75 AHDNDGS-TPLHLAALFGHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Query: 895 LK 896
K
Sbjct: 133 QK 134
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 619 NINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
++NA + +G++PLH AA + + I+++LL HGA+ + TPL A
Sbjct: 39 DVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLA 87
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 61/111 (54%), Gaps = 6/111 (5%)
Query: 521 RGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGAS 580
RG T+LH+A++ G I V+ +L+ G+D N +D G +PLH A GH V+ LLL A
Sbjct: 9 RGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL 68
Query: 581 INLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPL 631
+N T + ++ LH A NGH VK L+ + NAVN G P+
Sbjct: 69 VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASR------NAVNIFGLRPV 113
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Query: 802 ICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLL 861
N G T LHIA+ G V L+ +D N+ TPLH AC + +L +V LLL
Sbjct: 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAG-WTPLHEACNHGHLKVVELLL 63
Query: 862 AAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYG 908
K VN Y+ ++ LH AA N H ++ LLL GA N +G
Sbjct: 64 QHKAL-VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFG 109
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 6/122 (4%)
Query: 555 GCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQE 614
G + LH A+ +G + LL +G+ N+ D+ G T LH A N+GH V+ L+ + +
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL---QHK 66
Query: 615 VLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAK 674
L +N Q DSPLH AA+ G+ I++LLL +GA+ N + P+ ++ +
Sbjct: 67 AL---VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKS 123
Query: 675 LL 676
LL
Sbjct: 124 LL 125
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 39/64 (60%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D G+T LH A +G +KVV+L+L+ A N+ SPLH AA GH +++ LLL G
Sbjct: 40 DHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYG 99
Query: 579 ASIN 582
AS N
Sbjct: 100 ASRN 103
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 801 NICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLL 860
N+ + G+T LH A + GH +V LL+ ++A +N T + +PLH A +N ++ IV+LL
Sbjct: 37 NVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN-TTGYQNDSPLHDAAKNGHVDIVKLL 95
Query: 861 LA 862
L+
Sbjct: 96 LS 97
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 872 DYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEA 931
++RG T LH A+I LL++G+ P +K+H G T LH A L +V +L
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK 66
Query: 932 PFV 934
V
Sbjct: 67 ALV 69
Score = 36.6 bits (83), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 583 LTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSI 642
T++ G T LH+A+ G V+ L+ N ++ G +PLH A G+ +
Sbjct: 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP------NVKDHAGWTPLHEACNHGHLKV 58
Query: 643 IQLLLDHGANPTLENKRKVTPLQN-ANNLHV--AKLLNAY 679
++LLL H A + +PL + A N HV KLL +Y
Sbjct: 59 VELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY 98
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 833 INIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLAT 892
I+ T + T LHIA ++ V LL + N +D+ G T LH A + H +
Sbjct: 2 IDPFTNHRGETLLHIASIKGDIPSVEYLLQ-NGSDPNVKDHAGWTPLHEACNHGHLKVVE 60
Query: 893 LLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
LLL+ A + + LH A + + +V++L
Sbjct: 61 LLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLL 95
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 70.9 bits (172), Expect = 4e-12, Method: Composition-based stats.
Identities = 57/168 (33%), Positives = 82/168 (48%), Gaps = 7/168 (4%)
Query: 498 DDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCS 557
D + I+ +Q +MD G T LH+AA + R +L+ GAD NSQD G +
Sbjct: 27 DSTAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRT 86
Query: 558 PLHYAATRGHQNVLLLLLHSGAS-INLTDNEGNTALHLATNNGHETCVKALIYFNEQEVL 616
PLH A V +LL + A+ +N ++G T L LA E V+ LI
Sbjct: 87 PLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI------TA 140
Query: 617 NLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPL 664
+ +INA +N G + LH AA T + +LL H AN ++ + TPL
Sbjct: 141 DADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPL 188
Score = 43.1 bits (100), Expect = 7e-04, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 3/134 (2%)
Query: 795 DECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQ-LTPLHIACQNNN 853
D + N ++ G T LH A + + ++L+ RA N+ R+ TPL +A +
Sbjct: 72 DAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRA-TNLNARMHDGTTPLILAARLAI 130
Query: 854 LSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLH 913
+V L+ A ++NA D G TALH+AA N+T +LL A ++ +T L
Sbjct: 131 EGMVEDLITA-DADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLF 189
Query: 914 MAQQMTSLSLVRVL 927
+A + S + L
Sbjct: 190 LAAREGSYEASKAL 203
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 1/124 (0%)
Query: 804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAA 863
+ G T+LH+A D + L++ AD N + TPLH A + + + ++LL
Sbjct: 48 DKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGR-TPLHAAVAADAMGVFQILLRN 106
Query: 864 KQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSL 923
+ N+NA+ + G T L AA + L+ + A ++ G+T LH A + +
Sbjct: 107 RATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEA 166
Query: 924 VRVL 927
V +L
Sbjct: 167 VNIL 170
Score = 36.6 bits (83), Expect = 0.060, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 8/129 (6%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
G T L +AA +V+ ++ AD N+ D G + LH+AA + + +LL A+
Sbjct: 118 GTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANR 177
Query: 582 NLTDNEGNTALHLATNNGHETCVKALI-YFNEQEVLNLNINAVNNQGDSPLHAAARWGYT 640
+ D++ T L LA G KAL+ F +E+ ++ P A+ +
Sbjct: 178 DAQDDKDETPLFLAAREGSYEASKALLDNFANREI-------TDHMDRLPRDVASERLHH 230
Query: 641 SIIQLLLDH 649
I++LL +H
Sbjct: 231 DIVRLLDEH 239
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 15/101 (14%)
Query: 842 LTPLHIAC------------QNNNLSIVRLL--LAAKQCNVNA-QDYRGNTALHYAAINN 886
LTPL IA +NN S +++ L A+ +NA D G T+LH AA
Sbjct: 3 LTPLMIAAVRGGGLDTGEDIENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARFA 62
Query: 887 HTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
+ A LL +GA +++ G+T LH A ++ + ++L
Sbjct: 63 RADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQIL 103
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 70.5 bits (171), Expect = 4e-12, Method: Composition-based stats.
Identities = 39/86 (45%), Positives = 48/86 (55%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
G T LH AA G + V +L GAD N++ G +PLH AA GH ++ LLL GA +
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 582 NLTDNEGNTALHLATNNGHETCVKAL 607
N +GNT HLA NGH VK L
Sbjct: 69 NARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 68.2 bits (165), Expect = 2e-11, Method: Composition-based stats.
Identities = 38/98 (38%), Positives = 53/98 (54%), Gaps = 6/98 (6%)
Query: 555 GCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQE 614
G +PLH AA GH + LL GA +N +GNT LHLA NGH VK L+
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL------ 62
Query: 615 VLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGAN 652
++NA + G++P H A + G+ I++LL GA+
Sbjct: 63 AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100
Score = 64.3 bits (155), Expect = 3e-10, Method: Composition-based stats.
Identities = 40/96 (41%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
Query: 804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAA 863
+ DG T LH A GH + V+ L++ AD+N ++ TPLH+A +N + IV+LLLA
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGN-TPLHLAAKNGHAEIVKLLLA- 63
Query: 864 KQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
K +VNA+ GNT H A N H + LL GA
Sbjct: 64 KGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA 99
Score = 56.6 bits (135), Expect = 7e-08, Method: Composition-based stats.
Identities = 37/95 (38%), Positives = 52/95 (54%), Gaps = 9/95 (9%)
Query: 587 EGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLL 646
+GNT LH A NGH VK L+ ++NA + G++PLH AA+ G+ I++LL
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLL------SKGADVNARSKDGNTPLHLAAKNGHAEIVKLL 61
Query: 647 LDHGANPTLENKRKVTP--LQNANNLH-VAKLLNA 678
L GA+ +K TP L N H + KLL+A
Sbjct: 62 LAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDA 96
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 843 TPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQ 902
TPLH A +N + V+ LL+ K +VNA+ GNT LH AA N H + LLL GA
Sbjct: 11 TPLHNAAKNGHAEEVKKLLS-KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69
Query: 903 IKNHYGQTCLHMAQQMTSLSLVRVL 927
++ G T H+A++ +V++L
Sbjct: 70 ARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 49.7 bits (117), Expect = 8e-06, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 789 ESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIA 848
E + + + ++N + DG T LH+A GH ++V+LL+ AD+N ++ TP H+A
Sbjct: 24 EVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGN-TPEHLA 82
Query: 849 CQNNNLSIVRLLLAAKQCNVNAQDY 873
+N + IV+ LL AK +VNA+ +
Sbjct: 83 KKNGHHEIVK-LLDAKGADVNARSW 106
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 501 EEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLH 560
EE L + +S D G T LH+AA G ++V L+L GAD N++ G +P H
Sbjct: 23 EEVKKLLSKGADVNARSKD--GNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEH 80
Query: 561 YAATRGHQNVLLLLLHSGASIN 582
A GH ++ LL GA +N
Sbjct: 81 LAKKNGHHEIVKLLDAKGADVN 102
Score = 36.6 bits (83), Expect = 0.075, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 875 GNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
GNT LH AA N H LL GA ++ G T LH+A + +V++L
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLL 61
Score = 33.1 bits (74), Expect = 0.66, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 624 NNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQ-NANNLH--VAKLLNA 678
+ G++PLH AA+ G+ ++ LL GA+ +K TPL A N H + KLL A
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLA 63
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 70.1 bits (170), Expect = 5e-12, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 55/93 (59%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D+ G T L++A +G +++V+++L+ GAD N+ D G +PLH AA GH + +LL G
Sbjct: 44 DEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHG 103
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFN 611
A +N D G TA ++ NG+E + L N
Sbjct: 104 ADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/97 (36%), Positives = 55/97 (56%), Gaps = 6/97 (6%)
Query: 562 AATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNIN 621
AA G + + +L+ +GA +N D G T L+LAT +GH V+ L+ ++N
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA------DVN 74
Query: 622 AVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENK 658
AV+ G +PLH AA G+ I ++LL HGA+ ++K
Sbjct: 75 AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDK 111
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
Query: 775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
L + A+ +D E R + ++N + G T L++AT+ GH ++V +L+ AD+N
Sbjct: 18 LLEAARAGQD---DEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN 74
Query: 835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
V + TPLH+A +L I +LL +VNAQD G TA + N + +LA +L
Sbjct: 75 AVDAIG-FTPLHLAAFIGHLEIAEVLL-KHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Query: 895 LK 896
K
Sbjct: 133 QK 134
Score = 57.4 bits (137), Expect = 4e-08, Method: Composition-based stats.
Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Query: 814 ATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDY 873
A G D VR+L+ AD+N LTPL++A + +L IV +LL +VNA D
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYG-LTPLYLATAHGHLEIVEVLLK-NGADVNAVDA 78
Query: 874 RGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
G T LH AA H +A +LLK GA ++ +G+T ++
Sbjct: 79 IGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 45/80 (56%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
AA G+ V +++ GAD N++D G +PL+ A GH ++ +LL +GA +N D G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 589 NTALHLATNNGHETCVKALI 608
T LHLA GH + L+
Sbjct: 81 FTPLHLAAFIGHLEIAEVLL 100
Score = 47.4 bits (111), Expect = 4e-05, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 459 KLFEFARLGDGDKVRAILQ---EENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTT 515
KL E AR G D+VR ++ + N K++ PL L + E + + ++
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLY--LATAHGHLEIVEVL-LKNGADV 73
Query: 516 QSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLL 574
++D GFT LH+AA G +++ +++L+ GAD N+QD G + + G++++ +L
Sbjct: 74 NAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 857 VRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQ 916
VR+L+A +VNA+D G T L+ A + H + +LLK+GA + G T LH+A
Sbjct: 30 VRILMA-NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA 88
Query: 917 QMTSLSLVRVL 927
+ L + VL
Sbjct: 89 FIGHLEIAEVL 99
Score = 32.7 bits (73), Expect = 0.97, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 619 NINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKL 675
++NA + G +PL+ A G+ I+++LL +GA+ + TPL A +L +A++
Sbjct: 39 DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEV 98
Query: 676 L 676
L
Sbjct: 99 L 99
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 69.7 bits (169), Expect = 6e-12, Method: Composition-based stats.
Identities = 52/147 (35%), Positives = 76/147 (51%), Gaps = 7/147 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D G T LH+AA Y R +LE AD N QD G +PLH A + Q V +L+ +
Sbjct: 54 DRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 113
Query: 579 AS-INLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
A+ ++ ++G T L LA E ++ LI + ++NAV++ G S LH AA
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA------DVNAVDDLGKSALHWAAAV 167
Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPL 664
+LL +GAN ++N R+ TPL
Sbjct: 168 NNVDAAVVLLKNGANKDMQNNREETPL 194
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 46/160 (28%), Positives = 72/160 (45%), Gaps = 34/160 (21%)
Query: 801 NICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLL 860
N + G TALH+A + D + L+ AD NI + + TPLH A + + ++L
Sbjct: 51 NQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGR-TPLHAAVSADAQGVFQIL 109
Query: 861 --------------------LAAK-------------QCNVNAQDYRGNTALHYAAINNH 887
LAA+ +VNA D G +ALH+AA N+
Sbjct: 110 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 169
Query: 888 TNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
+ A +LLK+GA ++N+ +T L +A + S +VL
Sbjct: 170 VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 209
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 2/125 (1%)
Query: 806 DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQ 865
DG T L +A L ++ LIN AD+N V + + + LH A NN+ +LL
Sbjct: 123 DGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK-SALHWAAAVNNVDAAVVLLK-NG 180
Query: 866 CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVR 925
N + Q+ R T L AA A +LL A I +H + +AQ+ +VR
Sbjct: 181 ANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVR 240
Query: 926 VLTHE 930
+L E
Sbjct: 241 LLDLE 245
Score = 33.9 bits (76), Expect = 0.44, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 23/131 (17%)
Query: 798 LNINICNSDGYTALHIAT-SLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSI 856
+++N+ DG+T L IA+ S G + A I + Q LH
Sbjct: 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLH---------- 50
Query: 857 VRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQ 916
N D G TALH AA + ++ A LL++ A I+++ G+T LH A
Sbjct: 51 ------------NQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 98
Query: 917 QMTSLSLVRVL 927
+ + ++L
Sbjct: 99 SADAQGVFQIL 109
Score = 33.9 bits (76), Expect = 0.45, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
G T L +AA +++ ++ AD N+ D G S LH+AA + + ++LL +GA+
Sbjct: 124 GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK 183
Query: 582 NLTDNEGNTALHLATNNG-HETCVKALIYFNEQEVLN 617
++ +N T L LA G +ET L +F +++ +
Sbjct: 184 DMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 220
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 69.3 bits (168), Expect = 1e-11, Method: Composition-based stats.
Identities = 52/147 (35%), Positives = 76/147 (51%), Gaps = 7/147 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D G T LH+AA Y R +LE AD N QD G +PLH A + Q V +L+ +
Sbjct: 55 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 114
Query: 579 AS-INLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
A+ ++ ++G T L LA E ++ LI + ++NAV++ G S LH AA
Sbjct: 115 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA------DVNAVDDLGKSALHWAAAV 168
Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPL 664
+LL +GAN ++N R+ TPL
Sbjct: 169 NNVDAAVVLLKNGANKDMQNNREETPL 195
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 34/160 (21%)
Query: 801 NICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLL 860
N + G TALH+A D + L+ AD NI + + TPLH A + + ++L
Sbjct: 52 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR-TPLHAAVSADAQGVFQIL 110
Query: 861 --------------------LAAK-------------QCNVNAQDYRGNTALHYAAINNH 887
LAA+ +VNA D G +ALH+AA N+
Sbjct: 111 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 170
Query: 888 TNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
+ A +LLK+GA ++N+ +T L +A + S +VL
Sbjct: 171 VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 210
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 806 DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQ 865
DG T L +A L ++ LIN AD+N V + + + LH A NN+ +LL
Sbjct: 124 DGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK-SALHWAAAVNNVDAAVVLLK-NG 181
Query: 866 CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVR 925
N + Q+ R T L AA A +LL A I +H + +AQ+ +VR
Sbjct: 182 ANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVR 241
Query: 926 VL 927
+L
Sbjct: 242 LL 243
Score = 34.7 bits (78), Expect = 0.26, Method: Composition-based stats.
Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%)
Query: 458 TKLFEFARLGDGDKVRAILQ---EENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPT 514
T L AR D + +L+ + N +++ PL H S D L +++
Sbjct: 60 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPL-HAAVSADAQGVFQILIRNRATDL 118
Query: 515 TQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLL 574
M D G T L +AA +++ ++ AD N+ D G S LH+AA + + ++L
Sbjct: 119 DARMHD-GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 177
Query: 575 LHSGASINLTDNEGNTALHLATNNG-HETCVKALIYFNEQEVLN 617
L +GA+ ++ +N T L LA G +ET L +F +++ +
Sbjct: 178 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 221
Score = 33.9 bits (76), Expect = 0.46, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 23/131 (17%)
Query: 798 LNINICNSDGYTALHIAT-SLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSI 856
+++N+ DG+T L IA+ S G + A I + Q LH
Sbjct: 2 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLH---------- 51
Query: 857 VRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQ 916
N D G TALH AA + ++ A LL++ A I+++ G+T LH A
Sbjct: 52 ------------NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 99
Query: 917 QMTSLSLVRVL 927
+ + ++L
Sbjct: 100 SADAQGVFQIL 110
Score = 30.0 bits (66), Expect = 6.0, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 46/101 (45%)
Query: 511 SKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNV 570
S ++DD G + LH AA + ++L+ GA+ + Q+ +PL AA G
Sbjct: 147 SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYET 206
Query: 571 LLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFN 611
+LL A+ ++TD+ +A H V+ L +N
Sbjct: 207 AKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYN 247
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 68.9 bits (167), Expect = 1e-11, Method: Composition-based stats.
Identities = 52/147 (35%), Positives = 76/147 (51%), Gaps = 7/147 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D G T LH+AA Y R +LE AD N QD G +PLH A + Q V +L+ +
Sbjct: 54 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 113
Query: 579 AS-INLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
A+ ++ ++G T L LA E ++ LI + ++NAV++ G S LH AA
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA------DVNAVDDLGKSALHWAAAV 167
Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPL 664
+LL +GAN ++N R+ TPL
Sbjct: 168 NNVDAAVVLLKNGANKDMQNNREETPL 194
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 34/160 (21%)
Query: 801 NICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLL 860
N + G TALH+A D + L+ AD NI + + TPLH A + + ++L
Sbjct: 51 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR-TPLHAAVSADAQGVFQIL 109
Query: 861 --------------------LAAK-------------QCNVNAQDYRGNTALHYAAINNH 887
LAA+ +VNA D G +ALH+AA N+
Sbjct: 110 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 169
Query: 888 TNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
+ A +LLK+GA ++N+ +T L +A + S +VL
Sbjct: 170 VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 209
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 2/125 (1%)
Query: 806 DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQ 865
DG T L +A L ++ LIN AD+N V + + + LH A NN+ +LL
Sbjct: 123 DGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK-SALHWAAAVNNVDAAVVLLK-NG 180
Query: 866 CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVR 925
N + Q+ R T L AA A +LL A I +H + +AQ+ +VR
Sbjct: 181 ANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVR 240
Query: 926 VLTHE 930
+L E
Sbjct: 241 LLDLE 245
Score = 34.7 bits (78), Expect = 0.28, Method: Composition-based stats.
Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%)
Query: 458 TKLFEFARLGDGDKVRAILQ---EENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPT 514
T L AR D + +L+ + N +++ PL H S D L +++
Sbjct: 59 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPL-HAAVSADAQGVFQILIRNRATDL 117
Query: 515 TQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLL 574
M D G T L +AA +++ ++ AD N+ D G S LH+AA + + ++L
Sbjct: 118 DARMHD-GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 176
Query: 575 LHSGASINLTDNEGNTALHLATNNG-HETCVKALIYFNEQEVLN 617
L +GA+ ++ +N T L LA G +ET L +F +++ +
Sbjct: 177 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 220
Score = 33.9 bits (76), Expect = 0.49, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 23/131 (17%)
Query: 798 LNINICNSDGYTALHIAT-SLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSI 856
+++N+ DG+T L IA+ S G + A I + Q LH
Sbjct: 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLH---------- 50
Query: 857 VRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQ 916
N D G TALH AA + ++ A LL++ A I+++ G+T LH A
Sbjct: 51 ------------NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 98
Query: 917 QMTSLSLVRVL 927
+ + ++L
Sbjct: 99 SADAQGVFQIL 109
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 68.9 bits (167), Expect = 1e-11, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 55/93 (59%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D G T LH+AA+ +++V+++L+ GAD N+ D G +PLH A GH ++ +LL G
Sbjct: 44 DKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHG 103
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFN 611
A +N D G TA ++ +NG+E + L N
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 63.2 bits (152), Expect = 7e-10, Method: Composition-based stats.
Identities = 41/114 (35%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Query: 814 ATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDY 873
A G D VR+L+ AD+N +V LTPLH+A N++L IV +LL +VNA D
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVG-LTPLHLAAMNDHLEIVEVLLK-NGADVNAIDA 78
Query: 874 RGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
G T LH A+ H + +LLK GA ++ +G+T ++ + L +L
Sbjct: 79 IGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 6/97 (6%)
Query: 562 AATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNIN 621
AA G + + +L+ +GA +N D G T LHLA N H V+ L+ ++N
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGA------DVN 74
Query: 622 AVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENK 658
A++ G++PLH A +G+ I+++LL HGA+ ++K
Sbjct: 75 AIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDK 111
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 45/80 (56%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
AA G+ V +++ GAD N++D G +PLH AA H ++ +LL +GA +N D G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 589 NTALHLATNNGHETCVKALI 608
T LHL GH V+ L+
Sbjct: 81 ETPLHLVAMYGHLEIVEVLL 100
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 5/122 (4%)
Query: 775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
L + A+ +D E R + ++N + G T LH+A H ++V +L+ AD+N
Sbjct: 18 LLEAARAGQD---DEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVN 74
Query: 835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
+ + + TPLH+ +L IV +LL +VNAQD G TA + N + +LA +L
Sbjct: 75 AIDAIGE-TPLHLVAMYGHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Query: 895 LK 896
K
Sbjct: 133 QK 134
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 4/118 (3%)
Query: 459 KLFEFARLGDGDKVRAILQE--ENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQ 516
KL E AR G D+VR ++ + ED L H L + +D E + + ++
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLH-LAAMNDHLEIVEVL-LKNGADVN 74
Query: 517 SMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLL 574
++D G T LH+ A+YG +++V+++L+ GAD N+QD G + + G++++ +L
Sbjct: 75 AIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 30.0 bits (66), Expect = 5.9, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 619 NINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQ 665
++NA + G +PLH AA + I+++LL +GA+ + TPL
Sbjct: 39 DVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLH 85
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 68.9 bits (167), Expect = 1e-11, Method: Composition-based stats.
Identities = 52/147 (35%), Positives = 76/147 (51%), Gaps = 7/147 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D G T LH+AA Y R +LE AD N QD G +PLH A + Q V +L+ +
Sbjct: 22 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81
Query: 579 AS-INLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
A+ ++ ++G T L LA E ++ LI + ++NAV++ G S LH AA
Sbjct: 82 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA------DVNAVDDLGKSALHWAAAV 135
Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPL 664
+LL +GAN ++N R+ TPL
Sbjct: 136 NNVDAAVVLLKNGANKDMQNNREETPL 162
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 34/160 (21%)
Query: 801 NICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLL 860
N + G TALH+A D + L+ AD NI + + TPLH A + + ++L
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR-TPLHAAVSADAQGVFQIL 77
Query: 861 --------------------LAAK-------------QCNVNAQDYRGNTALHYAAINNH 887
LAA+ +VNA D G +ALH+AA N+
Sbjct: 78 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 137
Query: 888 TNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
+ A +LLK+GA ++N+ +T L +A + S +VL
Sbjct: 138 VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 177
Score = 35.4 bits (80), Expect = 0.16, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 806 DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQ 865
DG T L +A L ++ LIN AD+N V + + + LH A NN+ +LL
Sbjct: 91 DGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK-SALHWAAAVNNVDAAVVLLK-NG 148
Query: 866 CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVR 925
N + Q+ R T L AA A +LL A I +H + +AQ+ +VR
Sbjct: 149 ANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVR 208
Query: 926 VL 927
+L
Sbjct: 209 LL 210
Score = 34.3 bits (77), Expect = 0.29, Method: Composition-based stats.
Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%)
Query: 458 TKLFEFARLGDGDKVRAILQ---EENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPT 514
T L AR D + +L+ + N +++ PL H S D L +++
Sbjct: 27 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPL-HAAVSADAQGVFQILIRNRATDL 85
Query: 515 TQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLL 574
M D G T L +AA +++ ++ AD N+ D G S LH+AA + + ++L
Sbjct: 86 DARMHD-GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 144
Query: 575 LHSGASINLTDNEGNTALHLATNNG-HETCVKALIYFNEQEVLN 617
L +GA+ ++ +N T L LA G +ET L +F +++ +
Sbjct: 145 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 188
Score = 30.0 bits (66), Expect = 6.0, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 46/101 (45%)
Query: 511 SKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNV 570
S ++DD G + LH AA + ++L+ GA+ + Q+ +PL AA G
Sbjct: 114 SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYET 173
Query: 571 LLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFN 611
+LL A+ ++TD+ +A H V+ L +N
Sbjct: 174 AKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYN 214
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 62/139 (44%), Gaps = 39/139 (28%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D R T LH+AA Y R+++V L+L+ GAD +++D G PLH A + GH V LLL G
Sbjct: 55 DGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHG 114
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
A +N D L F +PLH AA
Sbjct: 115 ACVNAMD---------------------LWQF------------------TPLHEAASKN 135
Query: 639 YTSIIQLLLDHGANPTLEN 657
+ LLL HGA+PTL N
Sbjct: 136 RVEVCSLLLSHGADPTLVN 154
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 63/120 (52%), Gaps = 4/120 (3%)
Query: 798 LNINICNSDGY--TALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLS 855
LN+N SDG T LH+A +V+LL+ + AD++ + L PLH AC +
Sbjct: 47 LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDK-GGLVPLHNACSYGHYE 105
Query: 856 IVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
+ LLL C VNA D T LH AA N + +LLL GA P + N +G++ + MA
Sbjct: 106 VTELLLKHGAC-VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMA 164
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 88/347 (25%), Positives = 144/347 (41%), Gaps = 51/347 (14%)
Query: 595 ATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPT 654
A +G+E + AL+ LN+N +A + + +PLH AA + I+QLLL HGA+
Sbjct: 31 AARSGNEEKLMALL-----TPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVH 85
Query: 655 LENKRKVTPLQNA---NNLHVAKLL--NAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKY 709
++K + PL NA + V +LL + L+ + E S+
Sbjct: 86 AKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASK----------- 134
Query: 710 LDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPD 769
N + ++ + G P + K A +L + G
Sbjct: 135 ------NRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKG--------- 179
Query: 770 NACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGH---YDLVRLL 826
H L Q A+ E + + + E +N S TALH A + H + LL
Sbjct: 180 ---HSLLQAAR--EADLAKVKKTLALEIINFKQPQSH-ETALHCAVASLHPKRKQVAELL 233
Query: 827 INYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINN 886
+ A++N + +TPLH+A + + ++ +L +NA D G TALH AA+
Sbjct: 234 LRKGANVNEKNK-DFMTPLHVAAERAHNDVMEVL-HKHGAKMNALDSLGQTALHRAALAG 291
Query: 887 HTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPF 933
H LLL G+ P I + G T A QM + ++ ++L+ P
Sbjct: 292 HLQTCRLLLSYGSDPSIISLQGFT----AAQMGNEAVQQILSESTPM 334
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 77/149 (51%), Gaps = 25/149 (16%)
Query: 502 EAINLKHSQSKPTTQSMDDRGFTVLH--VAALY-GRIKVVDLVLELGADTNSQDLCGCSP 558
E IN K QS T LH VA+L+ R +V +L+L GA+ N ++ +P
Sbjct: 201 EIINFKQPQSHET----------ALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTP 250
Query: 559 LHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGH-ETCVKALIYFNEQEVLN 617
LH AA R H +V+ +L GA +N D+ G TALH A GH +TC L Y ++ +++
Sbjct: 251 LHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIIS 310
Query: 618 LNINAVNNQGDSPLHAAARWGYTSIIQLL 646
L QG + AA+ G ++ Q+L
Sbjct: 311 L-------QGFT----AAQMGNEAVQQIL 328
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 126/309 (40%), Gaps = 46/309 (14%)
Query: 562 AATRGHQNVLLLLLHS-GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNI 620
AA G++ L+ LL + + +D +T LHLA V+ L+ ++
Sbjct: 31 AARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGA------DV 84
Query: 621 NAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLLN 677
+A + G PLH A +G+ + +LLL HGA + + TPL A N + V LL
Sbjct: 85 HAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLL- 143
Query: 678 AYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEI 737
H P K V P+P + L Y ++ + R ++ ++
Sbjct: 144 -LSHGADPTLVNCHGKSAVDMAPTPELRE--RLTY------EFKGHSLLQAAREADLAKV 194
Query: 738 KKVEQL----FALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPV 793
KK L F +++E L + L HP ++ V E R
Sbjct: 195 KKTLALEIINFKQPQSHETALHCAVASL-----------HPK------RKQVAELLLR-- 235
Query: 794 TDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNN 853
+ N+N N D T LH+A H D++ +L + A +N + + Q T LH A +
Sbjct: 236 --KGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQ-TALHRAALAGH 292
Query: 854 LSIVRLLLA 862
L RLLL+
Sbjct: 293 LQTCRLLLS 301
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 10/115 (8%)
Query: 554 CGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQ 613
C + LH + V LLL GA++N + + T LH+A H ++ L +
Sbjct: 217 CAVASLHPK----RKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK 272
Query: 614 EVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNAN 668
+NA+++ G + LH AA G+ +LLL +G++P++ + + T Q N
Sbjct: 273 ------MNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN 321
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 66.6 bits (161), Expect = 6e-11, Method: Composition-based stats.
Identities = 34/89 (38%), Positives = 54/89 (60%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D G T LH+AA+ G +++V+++L+ GAD N+ G +PLH AA H ++ +LL G
Sbjct: 44 DYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHG 103
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKAL 607
A +N D G TA ++ +NG+E + L
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 64.3 bits (155), Expect = 3e-10, Method: Composition-based stats.
Identities = 43/122 (35%), Positives = 67/122 (54%), Gaps = 5/122 (4%)
Query: 775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
L + A+ +D E R +T ++N + G+T LH+A LGH ++V +L+ AD+N
Sbjct: 18 LLEAARAGQD---DEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVN 74
Query: 835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
+ TPLH+A ++L IV +LL +VNAQD G TA + N + +LA +L
Sbjct: 75 ATGNTGR-TPLHLAAWADHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Query: 895 LK 896
K
Sbjct: 133 QK 134
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/80 (41%), Positives = 45/80 (56%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
AA G+ V ++ GAD N+ D G +PLH AA GH ++ +LL +GA +N T N G
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG 80
Query: 589 NTALHLATNNGHETCVKALI 608
T LHLA H V+ L+
Sbjct: 81 RTPLHLAAWADHLEIVEVLL 100
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 562 AATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNIN 621
AA G + + +L +GA +N D G+T LHLA GH V+ L+ ++N
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGA------DVN 74
Query: 622 AVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENK 658
A N G +PLH AA + I+++LL HGA+ ++K
Sbjct: 75 ATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDK 111
Score = 52.8 bits (125), Expect = 8e-07, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Query: 814 ATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDY 873
A G D VR+L AD+N TPLH+A +L IV +LL +VNA
Sbjct: 21 AARAGQDDEVRILTANGADVN-ANDYWGHTPLHLAAMLGHLEIVEVLLK-NGADVNATGN 78
Query: 874 RGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
G T LH AA +H + +LLK GA ++ +G+T ++ + L +L
Sbjct: 79 TGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 36.2 bits (82), Expect = 0.089, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 611 NEQEVLNLN---INAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQN- 666
+E +L N +NA + G +PLH AA G+ I+++LL +GA+ TPL
Sbjct: 28 DEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLA 87
Query: 667 --ANNLHVAKLL 676
A++L + ++L
Sbjct: 88 AWADHLEIVEVL 99
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 65.9 bits (159), Expect = 9e-11, Method: Composition-based stats.
Identities = 51/147 (34%), Positives = 75/147 (51%), Gaps = 7/147 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D G T LH+AA Y R +LE AD QD G +PLH A + Q V +LL +
Sbjct: 19 DRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNR 78
Query: 579 AS-INLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
A+ ++ ++G T L LA E ++ LI + ++NAV++ G S LH AA
Sbjct: 79 ATDLDARMHDGTTPLILAARLALEGMLEDLINSHA------DVNAVDDLGKSALHWAAAV 132
Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPL 664
+LL +GAN ++N ++ TPL
Sbjct: 133 NNVDAAVVLLKNGANKDMQNNKEETPL 159
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 34/160 (21%)
Query: 801 NICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLL 860
N + G TALH+A D + L+ AD I + + TPLH A + + ++L
Sbjct: 16 NQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGR-TPLHAAVSADAQGVFQIL 74
Query: 861 L--------------------AAK-------------QCNVNAQDYRGNTALHYAAINNH 887
L AA+ +VNA D G +ALH+AA N+
Sbjct: 75 LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 134
Query: 888 TNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
+ A +LLK+GA ++N+ +T L +A + S +VL
Sbjct: 135 VDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVL 174
Score = 34.3 bits (77), Expect = 0.32, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
G T L +AA +++ ++ AD N+ D G S LH+AA + + ++LL +GA+
Sbjct: 89 GTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK 148
Query: 582 NLTDNEGNTALHLATNNG-HETCVKALIYFNEQEVLN 617
++ +N+ T L LA G +ET L +F +++ +
Sbjct: 149 DMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITD 185
Score = 34.3 bits (77), Expect = 0.37, Method: Composition-based stats.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 806 DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQ 865
DG T L +A L ++ LIN AD+N V + + + LH A NN+ +LL
Sbjct: 88 DGTTPLILAARLALEGMLEDLINSHADVNAVDDLGK-SALHWAAAVNNVDAAVVLL-KNG 145
Query: 866 CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVR 925
N + Q+ + T L AA A +LL A I +H + +AQ+ +VR
Sbjct: 146 ANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVR 205
Query: 926 VL 927
+L
Sbjct: 206 LL 207
Score = 30.0 bits (66), Expect = 6.3, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 621 NAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
N + G++ LH AAR+ + + LL+ A+ +++ TPL A
Sbjct: 16 NQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAA 62
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/94 (36%), Positives = 53/94 (56%)
Query: 517 SMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLH 576
+ D G + LH+AA YG +++L G +++ +PLH AA+ GH N++ +LL
Sbjct: 29 TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLK 88
Query: 577 SGASINLTDNEGNTALHLATNNGHETCVKALIYF 610
GA +N D TALH AT + H+ V+ LI +
Sbjct: 89 HGADVNAKDMLKMTALHWATEHNHQEVVELLIKY 122
Score = 60.1 bits (144), Expect = 6e-09, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Query: 807 GYTALHIATSLGHYDLVRLLINYRADINIVTRVK-QLTPLHIACQNNNLSIVRLLLAAKQ 865
G + LH+A GH+ +L+ RA ++ R K TPLH+A + +IV +LL
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLL--RAGVSRDARTKVDRTPLHMAASEGHANIVEVLLK-HG 90
Query: 866 CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVR 925
+VNA+D TALH+A +NH + LL+K GA ++ + +T ++ + L
Sbjct: 91 ADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAE 150
Query: 926 VL 927
+L
Sbjct: 151 IL 152
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/152 (30%), Positives = 73/152 (48%), Gaps = 7/152 (4%)
Query: 459 KLFEFARLGDGDKVRAILQEENKKEDSESL---PLCHPLCSCDDCEEAINLKHSQSKPTT 515
KL E AR G D+VR IL ++ L PL + L+ S+
Sbjct: 5 KLLEAARAGQDDEVR-ILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63
Query: 516 QSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLL 575
+D T LH+AA G +V+++L+ GAD N++D+ + LH+A HQ V+ LL+
Sbjct: 64 TKVDR---TPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI 120
Query: 576 HSGASINLTDNEGNTALHLATNNGHETCVKAL 607
GA ++ TA ++ +NG+E + L
Sbjct: 121 KYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 53.5 bits (127), Expect = 6e-07, Method: Composition-based stats.
Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 7/130 (5%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
AA G+ V +++ GA + D G SPLH AA GH + +LL +G S +
Sbjct: 9 AARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD 67
Query: 589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLD 648
T LH+A + GH V+ L+ ++NA + + LH A + +++LL+
Sbjct: 68 RTPLHMAASEGHANIVEVLLKHGA------DVNAKDMLKMTALHWATEHNHQEVVELLIK 121
Query: 649 HGANPTLENK 658
+GA+ ++K
Sbjct: 122 YGADVHTQSK 131
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 16/124 (12%)
Query: 562 AATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVL---NL 618
AA G + + +L+ +GA TD G + LHLA GH F+ EVL +
Sbjct: 9 AARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGH---------FSTTEVLLRAGV 58
Query: 619 NINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKL 675
+ +A +PLH AA G+ +I+++LL HGA+ ++ K+T L A N+ V +L
Sbjct: 59 SRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVEL 118
Query: 676 LNAY 679
L Y
Sbjct: 119 LIKY 122
Score = 46.6 bits (109), Expect = 6e-05, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 3/114 (2%)
Query: 814 ATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDY 873
A G D VR+L+ A T +PLH+A Q + S +LL A + +A+
Sbjct: 9 AARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAG-VSRDARTK 65
Query: 874 RGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
T LH AA H N+ +LLK GA K+ T LH A + +V +L
Sbjct: 66 VDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 64.3 bits (155), Expect = 3e-10, Method: Composition-based stats.
Identities = 57/184 (30%), Positives = 77/184 (41%), Gaps = 29/184 (15%)
Query: 524 TVLHVAALYGRIKVVDLVLELGADTNSQ-DLCGCSPLHYAATRGHQNVLLLLLHSGASIN 582
T L A + G V+L+L+ GA + DL SP+H AA RGH + L+ G +I+
Sbjct: 127 TPLFNACVSGSWDCVNLLLQHGASVQPESDLA--SPIHEAARRGHVECVNSLIAYGGNID 184
Query: 583 LTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQG---DSPLHAAARWGY 639
+ T L+LA N CVK L L A NQG DSPLHA R
Sbjct: 185 HKISHLGTPLYLACENQQRACVKKL----------LESGADVNQGKGQDSPLHAVVRTAS 234
Query: 640 TSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRP 699
+ LL+D GA+ +N P++ V PL + +E S P
Sbjct: 235 EELACLLMDFGADTQAKNAEGKRPVE-------------LVPPESPLAQLFLEREGASLP 281
Query: 700 PSPP 703
P
Sbjct: 282 KPKP 285
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 557 SPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVL 616
SP+H AA GHQ L L+ G ++N+ + + LH A GH +CVK L+ Q
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ--- 117
Query: 617 NLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGAN 652
+N V +PL A G + LLL HGA+
Sbjct: 118 ---VNGVTADWHTPLFNACVSGSWDCVNLLLQHGAS 150
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 805 SDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQL-TPLHIACQNNNLSIVRLLLAA 863
SD + +H A GH + V LI Y +I+ ++ L TPL++AC+N + V+ LL +
Sbjct: 155 SDLASPIHEAARRGHVECVNSLIAYGGNID--HKISHLGTPLYLACENQQRACVKKLLES 212
Query: 864 KQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQ 909
+VN Q ++ LH LA LL+ GA Q KN G+
Sbjct: 213 G-ADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGK 256
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 3/128 (2%)
Query: 800 INICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRL 859
+NI +D + LH A GH V++L+ + A +N VT TPL AC + + V L
Sbjct: 85 VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT-ADWHTPLFNACVSGSWDCVNL 143
Query: 860 LLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMT 919
LL D + +H AA H L+ G K + T L++A +
Sbjct: 144 LLQHGASVQPESDLA--SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQ 201
Query: 920 SLSLVRVL 927
+ V+ L
Sbjct: 202 QRACVKKL 209
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 6/131 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D+RGFT L A+ +G I+ V +LE GAD + S L A+T G+ +++ LLL
Sbjct: 33 DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERD 92
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
IN+ D G T L A H CV+AL+ ++ + G +P+ A G
Sbjct: 93 VDINIYDWNGGTPLLYAVRGNHVKCVEALL------ARGADLTTEADSGYTPMDLAVALG 146
Query: 639 YTSIIQLLLDH 649
Y + Q++ +H
Sbjct: 147 YRKVQQVIENH 157
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 2/116 (1%)
Query: 800 INICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRL 859
+N + G+T L A++ G + VR L+ + AD +I+ + ++ + L +A IV L
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERE-SALSLASTGGYTDIVGL 87
Query: 860 LLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
LL + ++N D+ G T L YA NH LL GA + G T + +A
Sbjct: 88 LLE-RDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLA 142
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 6/128 (4%)
Query: 548 TNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKAL 607
N D G +PL +A+ G + LL GA ++ E +AL LA+ G+ V L
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL 88
Query: 608 IYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
+ E++V +IN + G +PL A R + ++ LL GA+ T E TP+ A
Sbjct: 89 L---ERDV---DINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLA 142
Query: 668 NNLHVAKL 675
L K+
Sbjct: 143 VALGYRKV 150
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 6/131 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D+RGFT L A+ +G I+ V +LE GAD + S L A+T G+ +++ LLL
Sbjct: 33 DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERD 92
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
IN+ D G T L A + H CV+AL+ ++ + G +P+ A G
Sbjct: 93 VDINIYDWNGGTPLLYAVHGNHVKCVEALL------ARGADLTTEADSGYTPMDLAVALG 146
Query: 639 YTSIIQLLLDH 649
Y + Q++ +H
Sbjct: 147 YRKVQQVIENH 157
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 2/116 (1%)
Query: 800 INICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRL 859
+N + G+T L A++ G + VR L+ + AD +I+ + ++ + L +A IV L
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERE-SALSLASTGGYTDIVGL 87
Query: 860 LLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
LL + ++N D+ G T L YA NH LL GA + G T + +A
Sbjct: 88 LLE-RDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLA 142
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 59/128 (46%), Gaps = 6/128 (4%)
Query: 548 TNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKAL 607
N D G +PL +A+ G + LL GA ++ E +AL LA+ G+ V L
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL 88
Query: 608 IYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
+ E++V +IN + G +PL A + ++ LL GA+ T E TP+ A
Sbjct: 89 L---ERDV---DINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLA 142
Query: 668 NNLHVAKL 675
L K+
Sbjct: 143 VALGYRKV 150
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
G T +AA+ G +K++ L L GAD N D G + AA G L L GA++
Sbjct: 92 GATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV 151
Query: 582 NLT-----DNE-----GNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPL 631
NL D E G TAL A GH +K L+ + + ++NA +N G + L
Sbjct: 152 NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL-----DEMGADVNACDNMGRNAL 206
Query: 632 -HA---AARWGYTSIIQLLLDHGANPTLENKRKVTPL 664
HA + +I LLLDHGA+ + +R TPL
Sbjct: 207 IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL 243
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 115/286 (40%), Gaps = 43/286 (15%)
Query: 619 NINAVNNQGD-SPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLN 677
N+N +G +PLH A + I++LLL HGA+P L K TP A KLL
Sbjct: 50 NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLK 109
Query: 678 AYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEI 737
++ K +DVNE + + ++
Sbjct: 110 LFLSKG-----------------------------ADVNECDFYGFTAF--MEAAVYGKV 138
Query: 738 KKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDEC 797
K ++ L+ N ++ ++E++ L A+ VE + +
Sbjct: 139 KALKFLYKRGANVNLRRKTK----EDQERLRKGGATALMDAAEKGH--VEVLKILLDEMG 192
Query: 798 LNINICNSDGYTAL-HIATSLGHYD---LVRLLINYRADINIVTRVKQLTPLHIACQNNN 853
++N C++ G AL H S D + LL+++ AD+N+ + TPL +A + +
Sbjct: 193 ADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE-RGKTPLILAVEKKH 251
Query: 854 LSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
L +V+ LL + +N D G TAL A +A LL K GA
Sbjct: 252 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA 297
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 65/137 (47%), Gaps = 10/137 (7%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
++ G+T LH A R +V+L+L GAD + G +P AA G +L L L G
Sbjct: 56 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKG 115
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEV-LNLNINAVNNQ------GDSPL 631
A +N D G TA A G VKAL + ++ +NL +Q G + L
Sbjct: 116 ADVNECDFYGFTAFMEAAVYGK---VKALKFLYKRGANVNLRRKTKEDQERLRKGGATAL 172
Query: 632 HAAARWGYTSIIQLLLD 648
AA G+ ++++LLD
Sbjct: 173 MDAAEKGHVEVLKILLD 189
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 75/154 (48%), Gaps = 11/154 (7%)
Query: 504 INLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVL-ELGADTNSQDLCGCSPLHYA 562
+NL+ ++K + + G T L AA G ++V+ ++L E+GAD N+ D G + L +A
Sbjct: 151 VNLRR-KTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA 209
Query: 563 ATRGH----QNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNL 618
+ + LLL GA +N+ G T L LA H V+ L+ EQE ++
Sbjct: 210 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL---EQE--HI 264
Query: 619 NINAVNNQGDSPLHAAARWGYTSIIQLLLDHGAN 652
IN ++ G + L A I +LL GA+
Sbjct: 265 EINDTDSDGKTALLLAVELKLKKIAELLCKRGAS 298
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 14/146 (9%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQ---------LTPLHIAC 849
++N C+ G+TA A G ++ L A++N+ + K+ T L A
Sbjct: 117 DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA 176
Query: 850 QNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTN----LATLLLKSGARPQIKN 905
+ ++ ++++LL +VNA D G AL +A +++ + + LLL GA ++
Sbjct: 177 EKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRG 236
Query: 906 HYGQTCLHMAQQMTSLSLV-RVLTHE 930
G+T L +A + L LV R+L E
Sbjct: 237 ERGKTPLILAVEKKHLGLVQRLLEQE 262
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 13/143 (9%)
Query: 799 NINICNSDG-YTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIV 857
N+N +G +T LH A + D+V LL+ + AD ++ + TP +A ++ ++
Sbjct: 50 NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKKNGATPFILAAIAGSVKLL 108
Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHY---------- 907
+L L +K +VN D+ G TA AA+ L K GA ++
Sbjct: 109 KLFL-SKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKG 167
Query: 908 GQTCLHMAQQMTSLSLVRVLTHE 930
G T L A + + ++++L E
Sbjct: 168 GATALMDAAEKGHVEVLKILLDE 190
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 848 ACQNNNLSIVRLLLAAKQCNVNAQDYRGN-TALHYAAINNHTNLATLLLKSGARPQIKNH 906
A QN ++ +V+ LL NVN Q+ G T LH A + ++ LLL+ GA P ++
Sbjct: 32 AVQNEDVDLVQQLLEGG-ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKK 90
Query: 907 YGQTCLHMAQQMTSLSLVRVL 927
G T +A S+ L+++
Sbjct: 91 NGATPFILAAIAGSVKLLKLF 111
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 43/107 (40%), Gaps = 1/107 (0%)
Query: 821 DLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALH 880
DLV+ L+ A++N TPLH A Q + IV LLL V + G T
Sbjct: 39 DLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-LRKKNGATPFI 97
Query: 881 YAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
AAI L L L GA + YG T A + ++ L
Sbjct: 98 LAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 144
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 63.5 bits (153), Expect = 5e-10, Method: Composition-based stats.
Identities = 53/157 (33%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
G T +AA+ G +K++ L L GAD N D G + AA G L L GA++
Sbjct: 72 GATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV 131
Query: 582 NL-----TDNE-----GNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPL 631
NL D E G TAL A GH +K L+ + + ++NA +N G + L
Sbjct: 132 NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL-----DEMGADVNACDNMGRNAL 186
Query: 632 -HA---AARWGYTSIIQLLLDHGANPTLENKRKVTPL 664
HA + +I LLLDHGA+ + +R TPL
Sbjct: 187 IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL 223
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 47/154 (30%), Positives = 75/154 (48%), Gaps = 11/154 (7%)
Query: 504 INLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVL-ELGADTNSQDLCGCSPLHYA 562
+NL+ ++K + + G T L AA G ++V+ ++L E+GAD N+ D G + L +A
Sbjct: 131 VNLRR-KTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA 189
Query: 563 ATRGH----QNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNL 618
+ + LLL GA +N+ G T L LA H V+ L+ EQE ++
Sbjct: 190 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL---EQE--HI 244
Query: 619 NINAVNNQGDSPLHAAARWGYTSIIQLLLDHGAN 652
IN ++ G + L A I +LL GA+
Sbjct: 245 EINDTDSDGKTALLLAVELKLKKIAELLCKRGAS 278
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 65/137 (47%), Gaps = 10/137 (7%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
++ G+T LH A R +V+L+L GAD + G +P AA G +L L L G
Sbjct: 36 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKG 95
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEV-LNLNINAVNNQ------GDSPL 631
A +N D G TA A G VKAL + ++ +NL +Q G + L
Sbjct: 96 ADVNECDFYGFTAFMEAAVYGK---VKALKFLYKRGANVNLRRKTKEDQERLRKGGATAL 152
Query: 632 HAAARWGYTSIIQLLLD 648
AA G+ ++++LLD
Sbjct: 153 MDAAEKGHVEVLKILLD 169
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 14/146 (9%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQ---------LTPLHIAC 849
++N C+ G+TA A G ++ L A++N+ + K+ T L A
Sbjct: 97 DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA 156
Query: 850 QNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTN----LATLLLKSGARPQIKN 905
+ ++ ++++LL +VNA D G AL +A +++ + + LLL GA ++
Sbjct: 157 EKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRG 216
Query: 906 HYGQTCLHMAQQMTSLSLV-RVLTHE 930
G+T L +A + L LV R+L E
Sbjct: 217 ERGKTPLILAVEKKHLGLVQRLLEQE 242
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 13/143 (9%)
Query: 799 NINICNSDG-YTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIV 857
N+N +G +T LH A + D+V LL+ + AD ++ + TP +A ++ ++
Sbjct: 30 NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKKNGATPFLLAAIAGSVKLL 88
Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHY---------- 907
+L L +K +VN D+ G TA AA+ L K GA ++
Sbjct: 89 KLFL-SKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKG 147
Query: 908 GQTCLHMAQQMTSLSLVRVLTHE 930
G T L A + + ++++L E
Sbjct: 148 GATALMDAAEKGHVEVLKILLDE 170
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 799 NINICNSDGYTAL-HIATSLGHYD---LVRLLINYRADINIVTRVKQLTPLHIACQNNNL 854
++N C++ G AL H S D + LL+++ AD+N+ + TPL +A + +L
Sbjct: 174 DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE-RGKTPLILAVEKKHL 232
Query: 855 SIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
+V+ LL + +N D G TAL A +A LL K GA
Sbjct: 233 GLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA 277
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 619 NINAVNNQGD-SPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLN 677
N+N +G +PLH A + I++LLL HGA+P L K TP A KLL
Sbjct: 30 NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLK 89
Query: 678 AYVHK 682
++ K
Sbjct: 90 LFLSK 94
Score = 37.7 bits (86), Expect = 0.027, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 848 ACQNNNLSIVRLLLAAKQCNVNAQDYRGN-TALHYAAINNHTNLATLLLKSGARPQIKNH 906
A QN ++ +V+ LL NVN Q+ G T LH A + ++ LLL+ GA P ++
Sbjct: 12 AVQNEDVDLVQQLLEGG-ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKK 70
Query: 907 YGQTCLHMAQQMTSLSLVRVL 927
G T +A S+ L+++
Sbjct: 71 NGATPFLLAAIAGSVKLLKLF 91
Score = 33.9 bits (76), Expect = 0.42, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
Query: 821 DLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALH 880
DLV+ L+ A++N TPLH A Q + IV LLL V + G T
Sbjct: 19 DLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-LRKKNGATPFL 77
Query: 881 YAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
AAI L L L GA + YG T A
Sbjct: 78 LAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEA 112
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 63.5 bits (153), Expect = 6e-10, Method: Composition-based stats.
Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 6/130 (4%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
G T L V L G ++ +L GA+ + +D G + +H AA G + L LL + A +
Sbjct: 38 GRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADV 96
Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
N+ DNEGN LHLA GH V+ L+ N+ N++GD+ A +G
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS-----NVGHRNHKGDTACDLARLYGRNE 151
Query: 642 IIQLLLDHGA 651
++ L+ +GA
Sbjct: 152 VVSLMQANGA 161
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
N ++ + G+ +H A G D ++ L+ +AD+NI L PLH+A + +L +V
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNL-PLHLAAKEGHLRVVE 120
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
L+ NV ++++G+TA A + + +L+ +GA
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 566 GHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNN 625
G+ + LL GA+ +L D G +H A G ++ L+ E + ++N +N
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLL---ENQA---DVNIEDN 101
Query: 626 QGDSPLHAAARWGYTSIIQLLLDHGAN 652
+G+ PLH AA+ G+ +++ L+ H A+
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 7/109 (6%)
Query: 559 LHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNL 618
L AA RG L LL + ++N + G TAL + E + L+
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR-------GA 61
Query: 619 NINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
N + + G + +H AAR G+ +Q LL++ A+ +E+ PL A
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLA 110
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 63.2 bits (152), Expect = 8e-10, Method: Composition-based stats.
Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 6/130 (4%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
G T L V L G ++ +L GA+ + +D G + +H AA G + L LL A +
Sbjct: 38 GRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADV 96
Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
N+ DNEGN LHLA GH V+ L+ N+ N++GD+ A +G
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS-----NVGHRNHKGDTACDLARLYGRNE 151
Query: 642 IIQLLLDHGA 651
++ L+ +GA
Sbjct: 152 VVSLMQANGA 161
Score = 54.7 bits (130), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
N ++ + G+ +H A G D ++ L+ ++AD+NI L PLH+A + +L +V
Sbjct: 62 NPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNL-PLHLAAKEGHLRVVE 120
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
L+ NV ++++G+TA A + + +L+ +GA
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 566 GHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNN 625
G+ + LL GA+ +L D G +H A G ++ L+ F ++N +N
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQA------DVNIEDN 101
Query: 626 QGDSPLHAAARWGYTSIIQLLLDHGAN 652
+G+ PLH AA+ G+ +++ L+ H A+
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTAS 128
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 62.8 bits (151), Expect = 8e-10, Method: Composition-based stats.
Identities = 51/146 (34%), Positives = 69/146 (47%), Gaps = 16/146 (10%)
Query: 524 TVLHVAALYGRIKVVDLVLELGADTNSQ-DLCGCSPLHYAATRGHQNVLLLLLHSGASIN 582
T L A + G V+L+L+ GA + DL SP+H AA RGH + L+ G +I+
Sbjct: 71 TPLFNACVSGSWDCVNLLLQHGASVQPESDLA--SPIHEAARRGHVECVNSLIAYGGNID 128
Query: 583 LTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQG---DSPLHAAARWGY 639
+ T L+LA N CVK L L A NQG DSPLHA AR
Sbjct: 129 HKISHLGTPLYLACENQQRACVKKL----------LESGADVNQGKGQDSPLHAVARTAS 178
Query: 640 TSIIQLLLDHGANPTLENKRKVTPLQ 665
+ LL+D GA+ +N P++
Sbjct: 179 EELACLLMDFGADTQAKNAEGKRPVE 204
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 557 SPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVL 616
SP+H AA GHQ L L+ G ++N+ + + LH A GH +CVK L+ Q
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ--- 61
Query: 617 NLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGAN 652
+N V +PL A G + LLL HGA+
Sbjct: 62 ---VNGVTADWHTPLFNACVSGSWDCVNLLLQHGAS 94
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/129 (31%), Positives = 64/129 (49%), Gaps = 6/129 (4%)
Query: 805 SDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQL-TPLHIACQNNNLSIVRLLLAA 863
SD + +H A GH + V LI Y +I+ ++ L TPL++AC+N + V+ LL +
Sbjct: 99 SDLASPIHEAARRGHVECVNSLIAYGGNID--HKISHLGTPLYLACENQQRACVKKLLES 156
Query: 864 KQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSL 923
+VN Q ++ LH A LA LL+ GA Q KN G+ + + + L+
Sbjct: 157 G-ADVN-QGKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQ 214
Query: 924 VRVLTHEAP 932
+ L E P
Sbjct: 215 L-FLEREGP 222
Score = 38.1 bits (87), Expect = 0.020, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 3/128 (2%)
Query: 800 INICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRL 859
+NI +D + LH A GH V++L+ + A +N VT TPL AC + + V L
Sbjct: 29 VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT-ADWHTPLFNACVSGSWDCVNL 87
Query: 860 LLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMT 919
LL D + +H AA H L+ G K + T L++A +
Sbjct: 88 LLQHGASVQPESDLA--SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQ 145
Query: 920 SLSLVRVL 927
+ V+ L
Sbjct: 146 QRACVKKL 153
Score = 29.6 bits (65), Expect = 8.2, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 524 TVLHVAALYGRIKVVDLVLELGADTNS---QDLCGCSPLHYAATRGHQNVLLLLLHSGAS 580
T L++A + V +LE GAD N QD SPLH A + + LL+ GA
Sbjct: 136 TPLYLACENQQRACVKKLLESGADVNQGKGQD----SPLHAVARTASEELACLLMDFGAD 191
Query: 581 INLTDNEGNTALHL 594
+ EG + L
Sbjct: 192 TQAKNAEGKRPVEL 205
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 15/189 (7%)
Query: 481 KKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDL 540
++ D E++ L H + ++ + + S+ Q D T LH A G + +V
Sbjct: 36 RQPDKENVTLLH-WAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQ 94
Query: 541 VLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGH 600
+++ GAD + D GCS +H AA GH +++ L+ G +++ D G T L A H
Sbjct: 95 LMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTH 154
Query: 601 ETCVKALIYFNEQEVLNLNINAVNNQGD-----SPLHAAARWGYTSIIQLLLDHGANPTL 655
L+ L N N GD + LH A G T++I LLL+ GAN
Sbjct: 155 SVDPTRLL---------LTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDA 205
Query: 656 ENKRKVTPL 664
+N + + L
Sbjct: 206 QNIKGESAL 214
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 73/126 (57%), Gaps = 4/126 (3%)
Query: 801 NICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIAC-QNNNLSIVRL 859
++ + +G + +H+A GH +V LI D++++ + +TPL A + +++ RL
Sbjct: 103 SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQ-NGMTPLMWAAYRTHSVDPTRL 161
Query: 860 LLAAKQCNVNAQD-YRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
LL +VN D Y NTALH+A + +T + +LLL++GA +N G++ L +A+Q
Sbjct: 162 LLTFN-VSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQR 220
Query: 919 TSLSLV 924
++ ++
Sbjct: 221 KNVWMI 226
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 69/140 (49%), Gaps = 7/140 (5%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASIN-LTDNE 587
A YG + ++E G D D + LH+AA +++ + GA ++ L +
Sbjct: 16 ATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDL 75
Query: 588 GNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLL 647
+T LH AT GH + V L+ + L ++ +G S +H AA++G+TSI+ L+
Sbjct: 76 NSTPLHWATRQGHLSMVVQLMKYGADPSL------IDGEGCSCIHLAAQFGHTSIVAYLI 129
Query: 648 DHGANPTLENKRKVTPLQNA 667
G + + ++ +TPL A
Sbjct: 130 AKGQDVDMMDQNGMTPLMWA 149
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 3/124 (2%)
Query: 806 DGYTALHI--ATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAA 863
D Y+ I AT G Y+ R L+ D+ + + +T LH A NN + +V+ ++
Sbjct: 6 DDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDK-ENVTLLHWAAINNRIDLVKYYISK 64
Query: 864 KQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSL 923
+T LH+A H ++ L+K GA P + + G +C+H+A Q S+
Sbjct: 65 GAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSI 124
Query: 924 VRVL 927
V L
Sbjct: 125 VAYL 128
Score = 36.6 bits (83), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 2/138 (1%)
Query: 791 RPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQ 850
R + + ++ + + T LH A DLV+ I+ A ++ + TPLH A +
Sbjct: 26 RELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATR 85
Query: 851 NNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQT 910
+LS+V L+ + + D G + +H AA HT++ L+ G + + G T
Sbjct: 86 QGHLSMVVQLMKYG-ADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMT 144
Query: 911 CLHMAQQMT-SLSLVRVL 927
L A T S+ R+L
Sbjct: 145 PLMWAAYRTHSVDPTRLL 162
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 62.8 bits (151), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 6/130 (4%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
G T L V L G ++ +L GA+ + +D G + +H AA G + L LL A +
Sbjct: 38 GRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
N+ DNEGN LHLA GH V+ L+ N+ N++GD+ A +G
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS-----NVGHRNHKGDTACDLARLYGRNE 151
Query: 642 IIQLLLDHGA 651
++ L+ +GA
Sbjct: 152 VVSLMQANGA 161
Score = 53.9 bits (128), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
N ++ + G+ +H A G D ++ L+ ++AD+NI L PLH+A + +L +V
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNL-PLHLAAKEGHLRVVE 120
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
L+ NV ++++G+TA A + + +L+ +GA
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 566 GHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNN 625
G+ + LL GA+ +L D G +H A G ++ L+ F ++N +N
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQA------DVNIEDN 101
Query: 626 QGDSPLHAAARWGYTSIIQLLLDHGAN 652
+G+ PLH AA+ G+ +++ L+ H A+
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 7/109 (6%)
Query: 559 LHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNL 618
L AA RG L LL + ++N + G TAL + E + L+
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR-------GA 61
Query: 619 NINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
N + + G + +H AAR G+ +Q LL+ A+ +E+ PL A
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLA 110
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 62.8 bits (151), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 6/130 (4%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
G T L V L G ++ +L GA+ + +D G + +H AA G + L LL A +
Sbjct: 38 GRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
N+ DNEGN LHLA GH V+ L+ N+ N++GD+ A +G
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS-----NVGHRNHKGDTACDLARLYGRNE 151
Query: 642 IIQLLLDHGA 651
++ L+ +GA
Sbjct: 152 VVSLMQANGA 161
Score = 53.9 bits (128), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
N ++ + G+ +H A G D ++ L+ ++AD+NI L PLH+A + +L +V
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNL-PLHLAAKEGHLRVVE 120
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
L+ NV ++++G+TA A + + +L+ +GA
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 566 GHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNN 625
G+ + LL GA+ +L D G +H A G ++ L+ F ++N +N
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQA------DVNIEDN 101
Query: 626 QGDSPLHAAARWGYTSIIQLLLDHGAN 652
+G+ PLH AA+ G+ +++ L+ H A+
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Score = 30.4 bits (67), Expect = 4.5, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 7/109 (6%)
Query: 559 LHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNL 618
L AA RG L LL + ++N + G TAL + E + L+
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR-------GA 61
Query: 619 NINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
N + + G + +H AAR G+ +Q LL+ A+ +E+ PL A
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLA 110
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 89/194 (45%), Gaps = 23/194 (11%)
Query: 495 CSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLC 554
CS D EE + L + ++D G T LH A + + +V ++E GA+ N D
Sbjct: 48 CSSGDTEEVLRLLERGADINYANVD--GLTALHQACIDDNVDMVKFLVENGANINQPDNE 105
Query: 555 GCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATN-----------NGHETC 603
G PLH AA+ G+ ++ L+ GA + ++EG+T L +A N
Sbjct: 106 GWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVD 165
Query: 604 VKALIYFNEQEVLN-----LNINAVNN-----QGDSPLHAAARWGYTSIIQLLLDHGANP 653
++A E+ +L LN +N+ G + LH AA GYT +++LL+ +
Sbjct: 166 IEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV 225
Query: 654 TLENKRKVTPLQNA 667
+++ TPL A
Sbjct: 226 NIKDYDGWTPLHAA 239
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 562 AATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNIN 621
A + G +L LL GA IN + +G TALH A + + VK L+ NIN
Sbjct: 47 ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENG------ANIN 100
Query: 622 AVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPL 664
+N+G PLHAAA GY I + L+ GA+ N TPL
Sbjct: 101 QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPL 143
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 524 TVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINL 583
V A G + V +LE GAD N ++ G + LH A + +++ L+ +GA+IN
Sbjct: 42 AVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQ 101
Query: 584 TDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPL 631
DNEG LH A + G+ + LI ++ AVN++GD+PL
Sbjct: 102 PDNEGWIPLHAAASCGYLDIAEYLIS------QGAHVGAVNSEGDTPL 143
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 814 ATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDY 873
A S G + V L+ ADIN V LT LH AC ++N+ +V+ L+ N+N D
Sbjct: 47 ACSSGDTEEVLRLLERGADINYAN-VDGLTALHQACIDDNVDMVKFLVE-NGANINQPDN 104
Query: 874 RGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCL 912
G LH AA + ++A L+ GA N G T L
Sbjct: 105 EGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPL 143
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 67/156 (42%), Gaps = 27/156 (17%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIAC--------- 849
NIN +++G+ LH A S G+ D+ LI+ A + V TPL IA
Sbjct: 98 NINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGD-TPLDIAEEEAMEELLQ 156
Query: 850 -----QNNNLSIVR------LLLAAKQC--NVNAQDYR----GNTALHYAAINNHTNLAT 892
Q ++ R +L A+Q + + D R G TALH AA +T +
Sbjct: 157 NEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK 216
Query: 893 LLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLT 928
LL+++ IK++ G T LH A R+L
Sbjct: 217 LLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILV 252
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 501 EEAINLKHSQSKPTTQSMDD-----RGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCG 555
EE I L+ ++ + ++D G T LHVAA G +V+ L+++ D N +D G
Sbjct: 173 EERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDG 232
Query: 556 CSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLA 595
+PLH AA G + +L+ + + + G TA +A
Sbjct: 233 WTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA 272
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 35/159 (22%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHY----------------- 561
D+ G+ LH AA G + + + ++ GA + + G +PL
Sbjct: 103 DNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ 162
Query: 562 -----AATRGHQNVLLL----LLHSGASINLTDN--EGNTALHLATNNGHETCVKALIYF 610
AA + + ++L L+SG IN + G TALH+A G+ +K LI
Sbjct: 163 GVDIEAARKEEERIMLRDARQWLNSG-HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ- 220
Query: 611 NEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDH 649
++N + G +PLHAAA WG ++L+++
Sbjct: 221 -----ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN 254
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 555 GCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQE 614
G + LH AA +G+ VL LL+ + +N+ D +G T LH A + G E + L
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL------- 251
Query: 615 VLNL-NINAVNNQGDSPLHAA 634
V NL ++ AVN G + A
Sbjct: 252 VENLCDMEAVNKVGQTAFDVA 272
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+IN N DG TALH A + D+V+ L+ A+IN + PLH A L I
Sbjct: 65 DINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDN-EGWIPLHAAASCGYLDIAE 123
Query: 859 LLLAAKQCNVNAQDYRGNTAL 879
L+ ++ +V A + G+T L
Sbjct: 124 YLI-SQGAHVGAVNSEGDTPL 143
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 833 INIVTRVKQL-TPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLA 891
IN V K T LH+A +++LL+ A+ +VN +DY G T LH AA
Sbjct: 190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY-DVNIKDYDGWTPLHAAAHWGKEEAC 248
Query: 892 TLLLKSGARPQIKNHYGQTCLHMAQQ 917
+L+++ + N GQT +A +
Sbjct: 249 RILVENLCDMEAVNKVGQTAFDVADE 274
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 848 ACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHY 907
AC + + V L L + ++N + G TALH A I+++ ++ L+++GA ++
Sbjct: 47 ACSSGDTEEV-LRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE 105
Query: 908 GQTCLHMAQQMTSLSLVRVLTHEAPFV 934
G LH A L + L + V
Sbjct: 106 GWIPLHAAASCGYLDIAEYLISQGAHV 132
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQ 841
++NI + DG+T LH A G + R+L+ D+ V +V Q
Sbjct: 224 DVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQ 266
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 6/130 (4%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
G T L V L G ++ +L GA+ + +D G + +H AA G + L LL A +
Sbjct: 38 GRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
N+ DNEGN LHLA GH V+ L+ N+ N++GD+ A +G
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS-----NVGHRNHKGDTACDLARLYGRNE 151
Query: 642 IIQLLLDHGA 651
++ L+ +GA
Sbjct: 152 VVSLMQANGA 161
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
N ++ + G +H A G D ++ L+ ++AD+NI L PLH+A + +L +V
Sbjct: 62 NPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNL-PLHLAAKEGHLRVVE 120
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
L+ NV ++++G+TA A + + +L+ +GA
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 566 GHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNN 625
G+ + LL GA+ +L D GN +H A G ++ L+ F ++N +N
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQA------DVNIEDN 101
Query: 626 QGDSPLHAAARWGYTSIIQLLLDHGAN 652
+G+ PLH AA+ G+ +++ L+ H A+
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 7/109 (6%)
Query: 559 LHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNL 618
L AA RG L LL + ++N + G TAL + E + L+
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR-------GA 61
Query: 619 NINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
N + + G++ +H AAR G+ +Q LL+ A+ +E+ PL A
Sbjct: 62 NPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLA 110
Score = 30.0 bits (66), Expect = 6.8, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQ 917
RLLL + N + +D GN +H AA + LL+ A I+++ G LH+A +
Sbjct: 55 RLLL--RGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAK 112
Query: 918 MTSLSLVRVL 927
L +V L
Sbjct: 113 EGHLRVVEFL 122
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 62.0 bits (149), Expect = 2e-09, Method: Composition-based stats.
Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 8/132 (6%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
G T L V ++G + +L+ GA N QD G SP+H AA G + L +L+ GA +
Sbjct: 42 GKTALQVM-MFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV 100
Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
N+ D G +HLA GH V L +++ + +G +PL A + G
Sbjct: 101 NVPDGTGALPIHLAVQEGHTAVVSFL-------AAESDLHRRDARGLTPLELALQRGAQD 153
Query: 642 IIQLLLDHGANP 653
++ +L H P
Sbjct: 154 LVDILQGHMVAP 165
Score = 47.4 bits (111), Expect = 4e-05, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 503 AINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYA 562
A+ L + P Q D G + +H AA G + + +++E GAD N D G P+H A
Sbjct: 57 ALELLKQGASPNVQ--DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLA 114
Query: 563 ATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKAL 607
GH V+ L + + ++ D G T L LA G + V L
Sbjct: 115 VQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDIL 158
Score = 36.2 bits (82), Expect = 0.099, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 621 NAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
N + G SP+H AAR G+ +++L++HGA+ + + P+ A
Sbjct: 68 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLA 114
Score = 30.4 bits (67), Expect = 5.0, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 4/142 (2%)
Query: 786 VESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPL 845
V+ R + E ++ + N G TAL + G + L+ A N V +P+
Sbjct: 21 VQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPN-VQDTSGTSPV 78
Query: 846 HIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKN 905
H A + L +++L+ +VN D G +H A HT + + L + + ++
Sbjct: 79 HDAARTGFLDTLKVLVE-HGADVNVPDGTGALPIHLAVQEGHTAVVS-FLAAESDLHRRD 136
Query: 906 HYGQTCLHMAQQMTSLSLVRVL 927
G T L +A Q + LV +L
Sbjct: 137 ARGLTPLELALQRGAQDLVDIL 158
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 2/128 (1%)
Query: 800 INICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRL 859
IN + +G+T L A + G +V L+ AD ++ + ++ + L +AC IV++
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRE-SALSLACSKGYTDIVKM 87
Query: 860 LLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMT 919
LL +VN D+ G T L YA NH +LL+SGA P I+ G + +A +
Sbjct: 88 LLDCG-VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 146
Query: 920 SLSLVRVL 927
S+ +V+
Sbjct: 147 YRSVQQVI 154
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 6/131 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D+ GFT L AA +G+I VV+ +L+ GAD S L A ++G+ +++ +LL G
Sbjct: 33 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCG 92
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
+N D G T L A + H CVK L+ + + G + + A G
Sbjct: 93 VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE------TDSGYNSMDLAVALG 146
Query: 639 YTSIIQLLLDH 649
Y S+ Q++ H
Sbjct: 147 YRSVQQVIESH 157
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 549 NSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALI 608
N D G +PL +AA G V+ LL +GA L +AL LA + G+ VK L+
Sbjct: 30 NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLL 89
Query: 609 YFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLE 656
+++N + G +PL A + +++LL+ GA+PT+E
Sbjct: 90 D------CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE 131
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 620 INAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPL 664
IN + +G +PL AA G ++++ LL +GA+P L K + + L
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESAL 73
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 44/106 (41%), Gaps = 6/106 (5%)
Query: 559 LHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNL 618
+H A +G L + IN TD EG T L A +G V+ L+ L
Sbjct: 7 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL-- 64
Query: 619 NINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPL 664
+ +S L A GYT I+++LLD G + + TPL
Sbjct: 65 ----LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPL 106
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 2/128 (1%)
Query: 800 INICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRL 859
IN + +G+T L A + G +V L+ AD ++ + ++ + L +AC IV++
Sbjct: 45 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRE-SALSLACSKGYTDIVKM 103
Query: 860 LLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMT 919
LL +VN D+ G T L YA NH +LL+SGA P I+ G + +A +
Sbjct: 104 LLDCG-VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 162
Query: 920 SLSLVRVL 927
S+ +V+
Sbjct: 163 YRSVQQVI 170
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 6/131 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D+ GFT L AA +G+I VV+ +L+ GAD S L A ++G+ +++ +LL G
Sbjct: 49 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCG 108
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
+N D G T L A + H CVK L+ + + G + + A G
Sbjct: 109 VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE------TDSGYNSMDLAVALG 162
Query: 639 YTSIIQLLLDH 649
Y S+ Q++ H
Sbjct: 163 YRSVQQVIESH 173
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 549 NSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALI 608
N D G +PL +AA G V+ LL +GA L +AL LA + G+ VK L+
Sbjct: 46 NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLL 105
Query: 609 YFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLE 656
+++N + G +PL A + +++LL+ GA+PT+E
Sbjct: 106 ------DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE 147
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 620 INAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPL 664
IN + +G +PL AA G ++++ LL +GA+P L K + + L
Sbjct: 45 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESAL 89
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 44/106 (41%), Gaps = 6/106 (5%)
Query: 559 LHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNL 618
+H A +G L + IN TD EG T L A +G V+ L+ L
Sbjct: 23 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL-- 80
Query: 619 NINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPL 664
+ +S L A GYT I+++LLD G + + TPL
Sbjct: 81 ----LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPL 122
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 60.5 bits (145), Expect = 4e-09, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 8/128 (6%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
G T L V ++G + +L+ GA N QD G SP+H AA G + L +L+ GA +
Sbjct: 36 GKTALQVM-MFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV 94
Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
N+ D G +HLA GH V L +++ + +G +PL A + G
Sbjct: 95 NVPDGTGALPIHLAVQEGHTAVVSFL-------AAESDLHRRDARGLTPLELALQRGAQD 147
Query: 642 IIQLLLDH 649
++ +L H
Sbjct: 148 LVDILQGH 155
Score = 47.4 bits (111), Expect = 4e-05, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 503 AINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYA 562
A+ L + P Q D G + +H AA G + + +++E GAD N D G P+H A
Sbjct: 51 ALELLKQGASPNVQ--DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLA 108
Query: 563 ATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKAL 607
GH V+ L + + ++ D G T L LA G + V L
Sbjct: 109 VQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDIL 152
Score = 36.2 bits (82), Expect = 0.099, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 621 NAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
N + G SP+H AAR G+ +++L++HGA+ + + P+ A
Sbjct: 62 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLA 108
Score = 30.4 bits (67), Expect = 5.0, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 4/142 (2%)
Query: 786 VESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPL 845
V+ R + E ++ + N G TAL + G + L+ A N V +P+
Sbjct: 15 VQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPN-VQDTSGTSPV 72
Query: 846 HIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKN 905
H A + L +++L+ +VN D G +H A HT + + L + + ++
Sbjct: 73 HDAARTGFLDTLKVLVE-HGADVNVPDGTGALPIHLAVQEGHTAVVS-FLAAESDLHRRD 130
Query: 906 HYGQTCLHMAQQMTSLSLVRVL 927
G T L +A Q + LV +L
Sbjct: 131 ARGLTPLELALQRGAQDLVDIL 152
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 2/128 (1%)
Query: 800 INICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRL 859
IN + +G+T L A + G +V L+ AD ++ + ++ + L +AC IV++
Sbjct: 27 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRE-SALSLACSKGYTDIVKM 85
Query: 860 LLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMT 919
LL +VN D+ G T L YA NH +LL+SGA P I+ G + +A +
Sbjct: 86 LLDCG-VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 144
Query: 920 SLSLVRVL 927
S+ +V+
Sbjct: 145 YRSVQQVI 152
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 6/131 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D+ GFT L AA +G+I VV+ +L+ GAD S L A ++G+ +++ +LL G
Sbjct: 31 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCG 90
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
+N D G T L A + H CVK L+ + + G + + A G
Sbjct: 91 VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE------TDSGYNSMDLAVALG 144
Query: 639 YTSIIQLLLDH 649
Y S+ Q++ H
Sbjct: 145 YRSVQQVIESH 155
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 549 NSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALI 608
N D G +PL +AA G V+ LL +GA L +AL LA + G+ VK L+
Sbjct: 28 NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLL 87
Query: 609 YFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLE 656
+++N + G +PL A + +++LL+ GA+PT+E
Sbjct: 88 D------CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE 129
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 620 INAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPL 664
IN + +G +PL AA G ++++ LL +GA+P L K + + L
Sbjct: 27 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESAL 71
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 44/106 (41%), Gaps = 6/106 (5%)
Query: 559 LHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNL 618
+H A +G L + IN TD EG T L A +G V+ L+ L
Sbjct: 5 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL-- 62
Query: 619 NINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPL 664
+ +S L A GYT I+++LLD G + + TPL
Sbjct: 63 ----LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPL 104
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 59.7 bits (143), Expect = 7e-09, Method: Composition-based stats.
Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 8/132 (6%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
G T L V ++G V +L+ GA N QD G SP+H AA G + L +L+ GA +
Sbjct: 44 GKTALQVM-MFGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADV 102
Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
N D+ G+ +HLA GH + V L +++ + G +PL A + G +
Sbjct: 103 NALDSTGSLPIHLAIREGHSSVVSFL-------APESDLHHRDASGLTPLELARQRGAQN 155
Query: 642 IIQLLLDHGANP 653
++ +L H P
Sbjct: 156 LMDILQGHMMIP 167
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 503 AINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYA 562
A+ L + P Q D G + +H AA G + + +++E GAD N+ D G P+H A
Sbjct: 59 ALELLKQGASPNVQ--DASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLA 116
Query: 563 ATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKAL 607
GH +V+ L + ++ D G T L LA G + + L
Sbjct: 117 IREGHSSVVSFLAPE-SDLHHRDASGLTPLELARQRGAQNLMDIL 160
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 12/146 (8%)
Query: 786 VESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPL 845
V+ R + E ++ + N G TAL + G + L+ A N V +P+
Sbjct: 23 VQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSPAVALELLKQGASPN-VQDASGTSPV 80
Query: 846 HIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKN 905
H A + L +++L+ +VNA D G+ +H A H+++ + L P+
Sbjct: 81 HDAARTGFLDTLKVLVE-HGADVNALDSTGSLPIHLAIREGHSSVVSFL-----APESDL 134
Query: 906 HY----GQTCLHMAQQMTSLSLVRVL 927
H+ G T L +A+Q + +L+ +L
Sbjct: 135 HHRDASGLTPLELARQRGAQNLMDIL 160
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 59.7 bits (143), Expect = 7e-09, Method: Composition-based stats.
Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 8/132 (6%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
G T L V ++G V +L+ GA N QD G SP+H AA G + L +L+ GA +
Sbjct: 42 GKTALQVM-MFGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADV 100
Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
N D+ G+ +HLA GH + V L +++ + G +PL A + G +
Sbjct: 101 NALDSTGSLPIHLAIREGHSSVVSFL-------APESDLHHRDASGLTPLELARQRGAQN 153
Query: 642 IIQLLLDHGANP 653
++ +L H P
Sbjct: 154 LMDILQGHMMIP 165
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 503 AINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYA 562
A+ L + P Q D G + +H AA G + + +++E GAD N+ D G P+H A
Sbjct: 57 ALELLKQGASPNVQ--DASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLA 114
Query: 563 ATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKAL 607
GH +V+ L + ++ D G T L LA G + + L
Sbjct: 115 IREGHSSVVSFLAPE-SDLHHRDASGLTPLELARQRGAQNLMDIL 158
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 12/146 (8%)
Query: 786 VESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPL 845
V+ R + E ++ + N G TAL + G + L+ A N V +P+
Sbjct: 21 VQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSPAVALELLKQGASPN-VQDASGTSPV 78
Query: 846 HIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKN 905
H A + L +++L+ +VNA D G+ +H A H+++ + L P+
Sbjct: 79 HDAARTGFLDTLKVLVE-HGADVNALDSTGSLPIHLAIREGHSSVVSFL-----APESDL 132
Query: 906 HY----GQTCLHMAQQMTSLSLVRVL 927
H+ G T L +A+Q + +L+ +L
Sbjct: 133 HHRDASGLTPLELARQRGAQNLMDIL 158
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/79 (39%), Positives = 46/79 (58%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
AA G+ V +++ GAD ++D G +PLH AA GH V+ LLL +GA +N D G
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 589 NTALHLATNNGHETCVKAL 607
TA ++ +NG+E + L
Sbjct: 73 KTAFDISIDNGNEDLAEIL 91
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 814 ATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDY 873
A G D VR+L+ AD+ + TPLH+A +N +L +V+LLL A +VNAQD
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDK-NGSTPLHLAARNGHLEVVKLLLEAG-ADVNAQDK 70
Query: 874 RGNTALHYAAINNHTNLATLL 894
G TA + N + +LA +L
Sbjct: 71 FGKTAFDISIDNGNEDLAEIL 91
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 857 VRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQ 916
VR+L+A +V A+D G+T LH AA N H + LLL++GA ++ +G+T ++
Sbjct: 22 VRILMA-NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISI 80
Query: 917 QMTSLSLVRVL 927
+ L +L
Sbjct: 81 DNGNEDLAEIL 91
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLL 574
D G T LH+AA G ++VV L+LE GAD N+QD G + + G++++ +L
Sbjct: 36 DKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 562 AATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALI 608
AA G + + +L+ +GA + D G+T LHLA NGH VK L+
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLL 59
Score = 36.2 bits (82), Expect = 0.089, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 619 NINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENK 658
++ A + G +PLH AAR G+ +++LLL+ GA+ ++K
Sbjct: 31 DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDK 70
Score = 34.3 bits (77), Expect = 0.35, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
L + A+ +D E R + ++ + +G T LH+A GH ++V+LL+ AD+N
Sbjct: 10 LLEAARAGQD---DEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVN 66
Query: 835 IVTRVKQLTPLHIACQNNNLSIVRLL 860
+ + T I+ N N + +L
Sbjct: 67 AQDKFGK-TAFDISIDNGNEDLAEIL 91
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 47/79 (59%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
AA G+ V +++ GAD N++D G +PLH AA GH ++ +LL +GA +N D G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 589 NTALHLATNNGHETCVKAL 607
TA ++ +NG+E + L
Sbjct: 69 KTAFDISIDNGNEDLAEIL 87
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 857 VRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQ 916
VR+L+A +VNA+D G T LH AA H + +LLK+GA ++ +G+T ++
Sbjct: 18 VRILMA-NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISI 76
Query: 917 QMTSLSLVRVLTHEA 931
+ L +L A
Sbjct: 77 DNGNEDLAEILQKAA 91
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
L + A+ +D E R + ++N + DGYT LH+A GH ++V +L+ AD+N
Sbjct: 6 LLEAARAGQD---DEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 835 IVTRVKQLTPLHIACQNNNLSIVRLLLAA 863
+ + T I+ N N + +L A
Sbjct: 63 AQDKFGK-TAFDISIDNGNEDLAEILQKA 90
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 36/56 (64%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLL 574
D G+T LH+AA G +++V+++L+ GAD N+QD G + + G++++ +L
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 87
Score = 37.7 bits (86), Expect = 0.029, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 562 AATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALI 608
AA G + + +L+ +GA +N D +G T LHLA GH V+ L+
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 55
Score = 37.0 bits (84), Expect = 0.055, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 619 NINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENK 658
++NA + G +PLH AAR G+ I+++LL GA+ ++K
Sbjct: 27 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDK 66
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 83/314 (26%), Positives = 118/314 (37%), Gaps = 73/314 (23%)
Query: 587 EGNTALHLATNNGHETCVKALIYFNE-QEVLNLNINAVNNQGDSPLHAAARWGYTSIIQL 645
+G+TALHLA + HE + L+ F+ E L+L N+ G + LH AA G S ++
Sbjct: 8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQ----NDLGQTALHLAAILGEASTVEK 63
Query: 646 LLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPT 705
L GA + + T LH+A + A+ L RP P
Sbjct: 64 LYAAGAGVLVAERGGHTA------LHLACRVRAHTCACVLLQ---------PRPSHPRDA 108
Query: 706 QDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEE 765
D YL S + S+ +P
Sbjct: 109 SDTYLTQSQDCTPDTSHAPAAVDSQPN--------------------------------- 135
Query: 766 KVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRL 825
P+N E E R D L + N DG+T LH+A ++VRL
Sbjct: 136 --PEN----------------EEEPRD-EDWRLQLEAENYDGHTPLHVAVIHKDAEMVRL 176
Query: 826 LINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAIN 885
L + AD+N TPLH+A + S++ LLL A + A+ Y G T L A +
Sbjct: 177 LRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSALLR 235
Query: 886 NHTNLATLLLKSGA 899
+ LA LL GA
Sbjct: 236 PNPILARLLRAHGA 249
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 46/175 (26%), Positives = 68/175 (38%), Gaps = 44/175 (25%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDL---CGCSPLHYAATRGHQNVLLLLLHSG 578
G T LH+A ++ +D +L A DL G + LH AA G + + L +G
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALI-------------YF--------------- 610
A + + + G+TALHLA TC L+ Y
Sbjct: 69 AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128
Query: 611 ---------NEQEVLN----LNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGAN 652
NE+E + L + A N G +PLH A +++LL D GA+
Sbjct: 129 AVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD 183
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 843 TPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQ 902
TPLH+A + + +VRLL A + G T LH A ++ LLLK+GA P
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT 219
Query: 903 IKNHYGQTCLHMAQQMTSLSLVRVL-THEAP 932
+ + G+T L A + L R+L H AP
Sbjct: 220 ARMYGGRTPLGSALLRPNPILARLLRAHGAP 250
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNS-QDLCGCSPLHYAATRGHQNVLLLLLHSGA 579
G T LHVA ++ ++V L+ + GAD N + CG +PLH A +VL LLL +GA
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 58/212 (27%), Positives = 86/212 (40%), Gaps = 46/212 (21%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAA-TRGHQNVLLLLL-- 575
+D G T LH+AA+ G V+ + GA + G + LH A R H +LL
Sbjct: 42 NDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPR 101
Query: 576 -----------------------HSGASINLTDNEGNTA--------LHLATNN--GHET 602
H+ A+++ N N L L N GH
Sbjct: 102 PSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP 161
Query: 603 CVKALIYFNEQEV-LNLNINAVNNQ-----GDSPLHAAARWGYTSIIQLLLDHGANPTLE 656
A+I+ + + V L + A N+ G +PLH A S+++LLL GA+PT
Sbjct: 162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTAR 221
Query: 657 NKRKVTPLQNA---NNLHVAKLLNAYVHKPKP 685
TPL +A N +A+LL A+ P+P
Sbjct: 222 MYGGRTPLGSALLRPNPILARLLRAH-GAPEP 252
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 843 TPLHIACQNNNLSIVRLLL--AAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGAR 900
T LH+A + + + LL +A ++ Q+ G TALH AAI + L +GA
Sbjct: 11 TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70
Query: 901 PQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAP 932
+ G T LH+A ++ + + VL P
Sbjct: 71 VLVAERGGHTALHLACRVRAHTCACVLLQPRP 102
Score = 34.3 bits (77), Expect = 0.37, Method: Composition-based stats.
Identities = 40/177 (22%), Positives = 68/177 (38%), Gaps = 52/177 (29%)
Query: 800 INICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRL 859
+++ N G TALH+A LG V L A + + R T LH+AC+ + +
Sbjct: 38 LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGH-TALHLACRVRAHTCACV 96
Query: 860 LLAAK----------------------------------------------QCNVNAQDY 873
LL + + + A++Y
Sbjct: 97 LLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENY 156
Query: 874 RGNTALHYAAINNHTNLATLLLKSGA---RPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
G+T LH A I+ + LL +GA +P+ G+T LH+A + + S++ +L
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPT--CGRTPLHLAVEAQAASVLELL 211
Score = 33.9 bits (76), Expect = 0.49, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 875 GNTALHYAAINNHTNLATLLLKSGARPQ---IKNHYGQTCLHMAQQMTSLSLVRVL 927
G+TALH A I+ H LL A + ++N GQT LH+A + S V L
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64
Score = 33.1 bits (74), Expect = 0.82, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 4/100 (4%)
Query: 806 DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQL--TPLHIACQNNNLSIVRLLLAA 863
DG TALH+A H + L+ + A + L T LH+A S V L AA
Sbjct: 8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67
Query: 864 KQCNVNAQDYRGNTALHYAA-INNHTNLATLLLKSGARPQ 902
V + G+TALH A + HT LL + P+
Sbjct: 68 G-AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPR 106
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 83/314 (26%), Positives = 118/314 (37%), Gaps = 73/314 (23%)
Query: 587 EGNTALHLATNNGHETCVKALIYFNE-QEVLNLNINAVNNQGDSPLHAAARWGYTSIIQL 645
+G+TALHLA + HE + L+ F+ E L+L N+ G + LH AA G S ++
Sbjct: 8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQ----NDLGQTALHLAAILGEASTVEK 63
Query: 646 LLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPT 705
L GA + + T LH+A + A+ L RP P
Sbjct: 64 LYAAGAGVLVAERGGHTA------LHLACRVRAHTCACVLLQ---------PRPSHPRDA 108
Query: 706 QDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEE 765
D YL S + S+ +P
Sbjct: 109 SDTYLTQSQDCTPDTSHAPAAVDSQPN--------------------------------- 135
Query: 766 KVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRL 825
P+N E E R D L + N DG+T LH+A ++VRL
Sbjct: 136 --PEN----------------EEEPRD-EDWRLQLEAENYDGHTPLHVAVIHKDAEMVRL 176
Query: 826 LINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAIN 885
L + AD+N TPLH+A + S++ LLL A + A+ Y G T L A +
Sbjct: 177 LRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSALLR 235
Query: 886 NHTNLATLLLKSGA 899
+ LA LL GA
Sbjct: 236 PNPILARLLRAHGA 249
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 46/175 (26%), Positives = 68/175 (38%), Gaps = 44/175 (25%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDL---CGCSPLHYAATRGHQNVLLLLLHSG 578
G T LH+A ++ +D +L A DL G + LH AA G + + L +G
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALI-------------YF--------------- 610
A + + + G+TALHLA TC L+ Y
Sbjct: 69 AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128
Query: 611 ---------NEQEVLN----LNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGAN 652
NE+E + L + A N G +PLH A +++LL D GA+
Sbjct: 129 AVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD 183
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 843 TPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQ 902
TPLH+A + + +VRLL A + G T LH A ++ LLLK+GA P
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT 219
Query: 903 IKNHYGQTCLHMAQQMTSLSLVRVL-THEAP 932
+ + G+T L A + L R+L H AP
Sbjct: 220 ARMYGGRTPLGSALLRPNPILARLLRAHGAP 250
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNS-QDLCGCSPLHYAATRGHQNVLLLLLHSGA 579
G T LHVA ++ ++V L+ + GAD N + CG +PLH A +VL LLL +GA
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 58/212 (27%), Positives = 86/212 (40%), Gaps = 46/212 (21%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAA-TRGHQNVLLLLL-- 575
+D G T LH+AA+ G V+ + GA + G + LH A R H +LL
Sbjct: 42 NDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPR 101
Query: 576 -----------------------HSGASINLTDNEGNTA--------LHLATNN--GHET 602
H+ A+++ N N L L N GH
Sbjct: 102 PSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP 161
Query: 603 CVKALIYFNEQEV-LNLNINAVNNQ-----GDSPLHAAARWGYTSIIQLLLDHGANPTLE 656
A+I+ + + V L + A N+ G +PLH A S+++LLL GA+PT
Sbjct: 162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTAR 221
Query: 657 NKRKVTPLQNA---NNLHVAKLLNAYVHKPKP 685
TPL +A N +A+LL A+ P+P
Sbjct: 222 MYGGRTPLGSALLRPNPILARLLRAH-GAPEP 252
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 843 TPLHIACQNNNLSIVRLLL--AAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGAR 900
T LH+A + + + LL +A ++ Q+ G TALH AAI + L +GA
Sbjct: 11 TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70
Query: 901 PQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAP 932
+ G T LH+A ++ + + VL P
Sbjct: 71 VLVAERGGHTALHLACRVRAHTCACVLLQPRP 102
Score = 34.3 bits (77), Expect = 0.37, Method: Composition-based stats.
Identities = 40/177 (22%), Positives = 68/177 (38%), Gaps = 52/177 (29%)
Query: 800 INICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRL 859
+++ N G TALH+A LG V L A + + R T LH+AC+ + +
Sbjct: 38 LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGH-TALHLACRVRAHTCACV 96
Query: 860 LLAAK----------------------------------------------QCNVNAQDY 873
LL + + + A++Y
Sbjct: 97 LLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENY 156
Query: 874 RGNTALHYAAINNHTNLATLLLKSGA---RPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
G+T LH A I+ + LL +GA +P+ G+T LH+A + + S++ +L
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPT--CGRTPLHLAVEAQAASVLELL 211
Score = 33.9 bits (76), Expect = 0.49, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 875 GNTALHYAAINNHTNLATLLLKSGARPQ---IKNHYGQTCLHMAQQMTSLSLVRVL 927
G+TALH A I+ H LL A + ++N GQT LH+A + S V L
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64
Score = 33.1 bits (74), Expect = 0.82, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 4/100 (4%)
Query: 806 DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQL--TPLHIACQNNNLSIVRLLLAA 863
DG TALH+A H + L+ + A + L T LH+A S V L AA
Sbjct: 8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67
Query: 864 KQCNVNAQDYRGNTALHYAA-INNHTNLATLLLKSGARPQ 902
V + G+TALH A + HT LL + P+
Sbjct: 68 G-AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPR 106
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 3/127 (2%)
Query: 804 NSDGYTALHIATSLGHYDLVRLLINYRADINI--VTRVKQLTPLHIACQNNNLSIVRLLL 861
+ DG LH + S +++ L++ ++N+ TP HIAC NL +V+ L
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 92
Query: 862 AAK-QCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTS 920
+ ++N +G T LH A ++ L+++GA +IK+ + Q LH A + S
Sbjct: 93 DRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGS 152
Query: 921 LSLVRVL 927
L L+ +L
Sbjct: 153 LKLIELL 159
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 7/146 (4%)
Query: 483 EDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVL 542
+DS P H CS + E +L KP + ++G T LH+A +V ++
Sbjct: 69 DDSGWTPF-HIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI 127
Query: 543 ELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGAS-INLTDNEGNTALHLATNNGHE 601
E GA +D PLH AA+ G ++ LL G S +N D +G T L A GH
Sbjct: 128 ENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHG 187
Query: 602 TCVKALIYFNEQEVLNLNINAVNNQG 627
L+ E + V+N+G
Sbjct: 188 DAAVLLV-----EKYGAEYDLVDNKG 208
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 64/129 (49%), Gaps = 7/129 (5%)
Query: 551 QDLCGCSPLHYAATRGHQNVLLLLLHSGASINL---TDNEGNTALHLATNNGHETCVKAL 607
+D G PLH++ + + LL ++NL D+ G T H+A + G+ VK+L
Sbjct: 32 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 608 IYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
L ++N + NQG + LH A + + Q L+++GA+ +++K PL A
Sbjct: 92 Y----DRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRA 147
Query: 668 NNLHVAKLL 676
++ KL+
Sbjct: 148 ASVGSLKLI 156
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 844 PLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQI 903
PLH AC N V+ LL +K + +D G LH++ + + LL +
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 904 KNH---YGQTCLHMAQQMTSLSLVRVL 927
++ G T H+A + +L +V+ L
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSL 91
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 3/127 (2%)
Query: 804 NSDGYTALHIATSLGHYDLVRLLINYRADINI--VTRVKQLTPLHIACQNNNLSIVRLLL 861
+ DG LH + S +++ L++ ++N+ TP HIAC NL +V+ L
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 92
Query: 862 AAK-QCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTS 920
+ ++N +G T LH A ++ L+++GA +IK+ + Q LH A + S
Sbjct: 93 DRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGS 152
Query: 921 LSLVRVL 927
L L+ +L
Sbjct: 153 LKLIELL 159
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 7/146 (4%)
Query: 483 EDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVL 542
+DS P H CS + E +L KP + ++G T LH+A +V ++
Sbjct: 69 DDSGWTPF-HIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI 127
Query: 543 ELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGAS-INLTDNEGNTALHLATNNGHE 601
E GA +D PLH AA+ G ++ LL G S +N D +G T L A GH
Sbjct: 128 ENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHG 187
Query: 602 TCVKALIYFNEQEVLNLNINAVNNQG 627
L+ E + V+N+G
Sbjct: 188 DAAVLLV-----EKYGAEYDLVDNKG 208
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 64/129 (49%), Gaps = 7/129 (5%)
Query: 551 QDLCGCSPLHYAATRGHQNVLLLLLHSGASINL---TDNEGNTALHLATNNGHETCVKAL 607
+D G PLH++ + + LL ++NL D+ G T H+A + G+ VK+L
Sbjct: 32 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 608 IYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
L ++N + NQG + LH A + + Q L+++GA+ +++K PL A
Sbjct: 92 Y----DRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRA 147
Query: 668 NNLHVAKLL 676
++ KL+
Sbjct: 148 ASVGSLKLI 156
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 844 PLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQI 903
PLH AC N V+ LL +K + +D G LH++ + + LL +
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 904 KNH---YGQTCLHMAQQMTSLSLVRVL 927
++ G T H+A + +L +V+ L
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSL 91
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 3/127 (2%)
Query: 804 NSDGYTALHIATSLGHYDLVRLLINYRADINI--VTRVKQLTPLHIACQNNNLSIVRLLL 861
+ DG LH + S +++ L++ ++N+ TP HIAC NL +V+ L
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 92
Query: 862 AAK-QCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTS 920
+ ++N +G T LH A ++ L+++GA +IK+ + Q LH A + S
Sbjct: 93 DRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGS 152
Query: 921 LSLVRVL 927
L L+ +L
Sbjct: 153 LKLIELL 159
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 7/146 (4%)
Query: 483 EDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVL 542
+DS P H CS + E +L KP + ++G T LH+A +V ++
Sbjct: 69 DDSGWTPF-HIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI 127
Query: 543 ELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGAS-INLTDNEGNTALHLATNNGHE 601
E GA +D PLH AA+ G ++ LL G S +N D +G T L A GH
Sbjct: 128 ENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHG 187
Query: 602 TCVKALIYFNEQEVLNLNINAVNNQG 627
L+ E + V+N+G
Sbjct: 188 DAAVLLV-----EKYGAEYDLVDNKG 208
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 64/129 (49%), Gaps = 7/129 (5%)
Query: 551 QDLCGCSPLHYAATRGHQNVLLLLLHSGASINL---TDNEGNTALHLATNNGHETCVKAL 607
+D G PLH++ + + LL ++NL D+ G T H+A + G+ VK+L
Sbjct: 32 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 608 IYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
L ++N + NQG + LH A + + Q L+++GA+ +++K PL A
Sbjct: 92 Y----DRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRA 147
Query: 668 NNLHVAKLL 676
++ KL+
Sbjct: 148 ASVGSLKLI 156
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 844 PLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQI 903
PLH AC N V+ LL +K + +D G LH++ + + LL +
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 904 KNH---YGQTCLHMAQQMTSLSLVRVL 927
++ G T H+A + +L +V+ L
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSL 91
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 56.6 bits (135), Expect = 7e-08, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 45/79 (56%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
AA G+ V +++ GAD ++D G +PLH AA GH V+ LLL +GA + D G
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 589 NTALHLATNNGHETCVKAL 607
TA ++ +NG+E + L
Sbjct: 91 KTAFDISIDNGNEDLAEIL 109
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 814 ATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDY 873
A G D VR+L+ AD+ + TPLH+A +N +L +V+LLL A +V AQD
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDK-NGSTPLHLAARNGHLEVVKLLLEAG-ADVXAQDK 88
Query: 874 RGNTALHYAAINNHTNLATLL 894
G TA + N + +LA +L
Sbjct: 89 FGKTAFDISIDNGNEDLAEIL 109
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 857 VRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQ 916
VR+L+A +V A+D G+T LH AA N H + LLL++GA ++ +G+T ++
Sbjct: 40 VRILMA-NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISI 98
Query: 917 QMTSLSLVRVL 927
+ L +L
Sbjct: 99 DNGNEDLAEIL 109
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLL 574
D G T LH+AA G ++VV L+LE GAD +QD G + + G++++ +L
Sbjct: 54 DKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 562 AATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALI 608
AA G + + +L+ +GA + D G+T LHLA NGH VK L+
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLL 77
Score = 36.6 bits (83), Expect = 0.065, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 619 NINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENK 658
++ A + G +PLH AAR G+ +++LLL+ GA+ ++K
Sbjct: 49 DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDK 88
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
L + A+ +D E R + ++ + +G T LH+A GH ++V+LL+ AD+
Sbjct: 28 LLEAARAGQD---DEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX 84
Query: 835 IVTRVKQLTPLHIACQNNNLSIVRLL 860
+ + T I+ N N + +L
Sbjct: 85 AQDKFGK-TAFDISIDNGNEDLAEIL 109
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 83/171 (48%), Gaps = 14/171 (8%)
Query: 518 MDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLL-H 576
+D G T L++A I++ +++ GAD N Q+ SP YA +G +L +L H
Sbjct: 35 VDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKH 94
Query: 577 SGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAA- 635
+ +N + G AL A GH VK L+ ++ I+ N+ G + L A
Sbjct: 95 ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRED-----IDFQNDFGYTALIEAVG 149
Query: 636 -RWG---YTSIIQLLLDHGANPTLENKRKVTPLQNANN---LHVAKLLNAY 679
R G Y I++LL+++GA+ ++++ T + AN ++K+L Y
Sbjct: 150 LREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 506 LKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELG-ADTNSQDLCGCSPLHYA-- 562
LKH+ P + G L AA G I V L+LE G D + Q+ G + L A
Sbjct: 92 LKHA--TPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVG 149
Query: 563 ---ATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFN 611
+ +Q+++ LL+ +GA ++ DN G TA+ A G+ K L +N
Sbjct: 150 LREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 559 LHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNL 618
L A R + V +L + ++ D EGNT L++A +N KALI
Sbjct: 10 LEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALI------DRGA 63
Query: 619 NINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTL 655
+IN N+ DSP A G T I+ +L H A P L
Sbjct: 64 DINLQNSISDSPYLYAGAQGRTEILAYMLKH-ATPDL 99
Score = 36.2 bits (82), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 843 TPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQ 902
TPL+IA NN++ I + L+ + ++N Q+ ++ YA T + +LK A P
Sbjct: 41 TPLNIAVHNNDIEIAKALI-DRGADINLQNSISDSPYLYAGAQGRTEILAYMLKH-ATPD 98
Query: 903 IKNH--YGQTCLHMAQQMTSLSLVRVLTHEA 931
+ H YG L A + + V++L +
Sbjct: 99 LNKHNRYGGNALIPAAEKGHIDNVKLLLEDG 129
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 72/175 (41%), Gaps = 38/175 (21%)
Query: 793 VTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRV------------- 839
+ D ++ +++G T L+IA ++ + LI+ ADIN+ +
Sbjct: 25 LQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGR 84
Query: 840 --------KQLTP------------LHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTAL 879
K TP L A + ++ V+LLL + +++ Q+ G TAL
Sbjct: 85 TEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTAL 144
Query: 880 HYAAINNHTN-----LATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTH 929
A N + LL+++GA IK++ G+T + A Q + ++L
Sbjct: 145 IEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 63/128 (49%), Gaps = 6/128 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D G T L A R+ + + +L G++ N++D G +PL ++ G+ + LL G
Sbjct: 65 DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHG 124
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
A++N + EG T L +A+ G VK L+ L +I+A + G + +A +G
Sbjct: 125 ANVNDRNLEGETPLIVASKYGRSEIVKKLLE------LGADISARDLTGLTAEASARIFG 178
Query: 639 YTSIIQLL 646
+I++
Sbjct: 179 RQEVIKIF 186
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 843 TPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQ 902
T L A +NN L I LL+ K NVN +D+ G T L ++ I ++ ++ LL+ GA
Sbjct: 70 TALIWAVKNNRLGIAEKLLS-KGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVN 128
Query: 903 IKNHYGQTCLHMAQQMTSLSLVRVL 927
+N G+T L +A + +V+ L
Sbjct: 129 DRNLEGETPLIVASKYGRSEIVKKL 153
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 6/129 (4%)
Query: 524 TVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINL 583
T L VA + G +D ++E +D+ G + L +A + LL G+++N
Sbjct: 37 TPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT 96
Query: 584 TDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSII 643
D G T L + G+ + YF + N+N N +G++PL A+++G + I+
Sbjct: 97 KDFSGKTPLMWSIIFGYSE----MSYFLLEH--GANVNDRNLEGETPLIVASKYGRSEIV 150
Query: 644 QLLLDHGAN 652
+ LL+ GA+
Sbjct: 151 KKLLELGAD 159
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 6/116 (5%)
Query: 549 NSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALI 608
N +D +PL A G +N + L+ + + D EG+TAL A N + L+
Sbjct: 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 609 YFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPL 664
N+N + G +PL + +GY+ + LL+HGAN N TPL
Sbjct: 89 SKGS------NVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPL 138
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 12/107 (11%)
Query: 504 INLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAA 563
IN K SQ+ G T L +A +GR+ VV +L AD N QD G + L A
Sbjct: 175 INAKASQA----------GQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCAC 224
Query: 564 TRGHQNVL-LLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIY 609
GH+ + LLL I+LTD +G+TAL +A + G ++ + +++Y
Sbjct: 225 EHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAG-QSEIASMLY 270
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 799 NINICNSD-GYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIV 857
NIN S G TAL +A S G D+V+ L+ AD+N V T L AC++ + I
Sbjct: 174 NINAKASQAGQTALMLAVSHGRVDVVKALLACEADVN-VQDDDGSTALMCACEHGHKEIA 232
Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
LLLA C+++ D G+TAL A + +A++L
Sbjct: 233 GLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASML 269
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 10/113 (8%)
Query: 792 PVTDECLNINICNSD-----GYTAL---HIATSLGHYDLVRLLINYR-ADINIVTRVKQL 842
PV + L+ +C D GY+ + +AT D+ +L +R +IN
Sbjct: 125 PVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQ 184
Query: 843 TPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLL 895
T L +A + + +V+ LLA + +VN QD G+TAL A + H +A LLL
Sbjct: 185 TALMLAVSHGRVDVVKALLAC-EADVNVQDDDGSTALMCACEHGHKEIAGLLL 236
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 5/112 (4%)
Query: 535 IKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHL 594
I+ V + LG G + L A + G +V+ LL A +N+ D++G+TAL
Sbjct: 163 IETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMC 222
Query: 595 ATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLL 646
A +GH+ L+ V + +I+ + G + L A G + I +L
Sbjct: 223 ACEHGHKEIAGLLL-----AVPSCDISLTDRDGSTALMVALDAGQSEIASML 269
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLC-GCSPLHYAATRGHQNVLLLLLHSGAS 580
G T LH+A+++G + +V+L++ LGAD N+Q+ C G + LH A + +++ LLL GA
Sbjct: 117 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD 176
Query: 581 INLTDNEGNTALHL 594
+N +G + L
Sbjct: 177 VNRVTYQGYSPYQL 190
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 4/141 (2%)
Query: 516 QSMDDRGFTVLHVAALYG-RIKVVDLVLELGADT---NSQDLCGCSPLHYAATRGHQNVL 571
Q + + G + LH+A ++ + ++++ ++ D N Q+ +PLH A +
Sbjct: 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIA 61
Query: 572 LLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPL 631
LL +G L D GNT LHLA G V L L+ + A N G + L
Sbjct: 62 EALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 121
Query: 632 HAAARWGYTSIIQLLLDHGAN 652
H A+ GY I++LL+ GA+
Sbjct: 122 HLASIHGYLGIVELLVSLGAD 142
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 11/145 (7%)
Query: 791 RPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQ 850
R V + +N N+ T LH+A ++ L+ D + + TPLH+AC+
Sbjct: 29 RQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPEL-RDFRGNTPLHLACE 87
Query: 851 NNNLSIVRLLLAAKQCN-------VNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQI 903
L+ V +L + C + A +Y G+T LH A+I+ + + LL+ GA
Sbjct: 88 QGCLASVGVL--TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNA 145
Query: 904 KNH-YGQTCLHMAQQMTSLSLVRVL 927
+ G+T LH+A + + LV +L
Sbjct: 146 QEPCNGRTALHLAVDLQNPDLVSLL 170
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAA 863
N +G+T LH+A+ G+ +V LL++ AD+N T LH+A N +V LLL
Sbjct: 114 NYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC 173
Query: 864 KQCNVNAQDYRG 875
+VN Y+G
Sbjct: 174 G-ADVNRVTYQG 184
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 868 VNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
+N Q+ T LH A I N +A LL +G P++++ G T LH+A + L+ V VL
Sbjct: 38 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 97
Query: 928 T 928
T
Sbjct: 98 T 98
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 61/132 (46%), Gaps = 16/132 (12%)
Query: 807 GYTALHIATSLGHYDLVRLLIN-----YRADINIVTRVKQLTPLHIACQNNNLSIVRLLL 861
G T LH+A G V +L + I T T LH+A + L IV LL+
Sbjct: 78 GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLV 137
Query: 862 AAKQCNVNAQD-YRGNTALHYAAINNHTNLATLLLKSGA---RPQIKNH------YGQTC 911
+ +VNAQ+ G TALH A + +L +LLLK GA R + + +G+
Sbjct: 138 SLG-ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPS 196
Query: 912 LHMAQQMTSLSL 923
+ QQ+ L+L
Sbjct: 197 TRIQQQLGQLTL 208
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 521 RGFTVLHVAALYGRIKVVD-LVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGA 579
+G T LH AA +V LV E G++ + QD G +P+ AA G V+ L+ GA
Sbjct: 278 KGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGA 337
Query: 580 SINLTDNEGNTALHLATNNGHETCV 604
S+ D +TA LA N H V
Sbjct: 338 SVEAVDATDHTARQLAQANNHHNIV 362
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 58/139 (41%), Gaps = 10/139 (7%)
Query: 799 NINICNSDGYTALHIATSLGHYDLV---RLLINYRADINI-------VTRVKQLTPLHIA 848
+I + +G TAL I D V +LL+ A ++ + K T LH A
Sbjct: 227 DIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYA 286
Query: 849 CQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYG 908
Q +N IV+ L+ K N + QD G T + AA + L++ GA + +
Sbjct: 287 AQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATD 346
Query: 909 QTCLHMAQQMTSLSLVRVL 927
T +AQ ++V +
Sbjct: 347 HTARQLAQANNHHNIVDIF 365
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 830 RADINIVTRVKQLTPLHIACQNNNLSIVRLLLA--AKQC-----NVNAQDYRGNTALHYA 882
R +NI+ T LH N++ L+ AK+C +VNA D NT L A
Sbjct: 114 RESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAXDCDENTPLXLA 173
Query: 883 AINNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
+ L L K+GA P I N ++ LH A
Sbjct: 174 VLARRRRLVAYLXKAGADPTIYNKSERSALHQA 206
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 518 MDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLL 574
D+ G T + +AA GRI+VV +++ GA + D + A H N++ +
Sbjct: 309 QDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 365
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLC-GCSPLHYAATRGHQNVLLLLLHSGAS 580
G T LH+A+++G + +V+L++ LGAD N+Q+ C G + LH A + +++ LLL GA
Sbjct: 114 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD 173
Query: 581 INLTDNEGNTALHL 594
+N +G + L
Sbjct: 174 VNRVTYQGYSPYQL 187
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 44/96 (45%)
Query: 557 SPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVL 616
+PLH A + LL +G L D GNT LHLA G V L L
Sbjct: 44 TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 103
Query: 617 NLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGAN 652
+ + A N G + LH A+ GY I++LL+ GA+
Sbjct: 104 HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD 139
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 11/145 (7%)
Query: 791 RPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQ 850
R V + +N N+ T LH+A ++ L+ D + + TPLH+AC+
Sbjct: 26 RQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPEL-RDFRGNTPLHLACE 84
Query: 851 NNNLSIVRLLLAAKQCN-------VNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQI 903
L+ V +L + C + A +Y G+T LH A+I+ + + LL+ GA
Sbjct: 85 QGCLASVGVL--TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNA 142
Query: 904 KNHY-GQTCLHMAQQMTSLSLVRVL 927
+ G+T LH+A + + LV +L
Sbjct: 143 QEPCNGRTALHLAVDLQNPDLVSLL 167
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAA 863
N +G+T LH+A+ G+ +V LL++ AD+N T LH+A N +V LLL
Sbjct: 111 NYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC 170
Query: 864 KQCNVNAQDYRG 875
+VN Y+G
Sbjct: 171 G-ADVNRVTYQG 181
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 868 VNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
+N Q+ T LH A I N +A LL +G P++++ G T LH+A + L+ V VL
Sbjct: 35 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 94
Query: 928 T 928
T
Sbjct: 95 T 95
Score = 36.2 bits (82), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 807 GYTALHIATSLGHYDLVRLLIN-----YRADINIVTRVKQLTPLHIACQNNNLSIVRLLL 861
G T LH+A G V +L + I T T LH+A + L IV LL+
Sbjct: 75 GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLV 134
Query: 862 AAKQCNVNAQD-YRGNTALHYAAINNHTNLATLLLKSGA 899
+ +VNAQ+ G TALH A + +L +LLLK GA
Sbjct: 135 SLG-ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA 172
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 69/166 (41%), Gaps = 19/166 (11%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
DD +HVAA G+ V ++E G Q+ GC+ LH A G + L G
Sbjct: 17 DDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG 76
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYF---------------NEQEVLNLNINAV 623
+L G +HLA V AL+ +E+EV + +
Sbjct: 77 EVHSLW--HGQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSHVK 134
Query: 624 NNQGDSPLHAAARWG--YTSIIQLLLDHGANPTLENKRKVTPLQNA 667
+ +G + LH G Y I++L+ GA+PT ++K TPL A
Sbjct: 135 HCKGQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRA 180
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 879 LHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
+H AA T+ L+++G P I+N +G T LH+A
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLA 60
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 618 LNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
LN +++ +H AAR G T ++ L++ G +PT++N+ T L A
Sbjct: 11 LNRIKSDDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLA 60
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 54/118 (45%), Gaps = 9/118 (7%)
Query: 787 ESESRPVTDECLNINICNSDGYTALHIATSLG--HYDLVRLLINYRADINIVTRVKQLTP 844
E + R V + ++ C G TALH LG + + +++L+ A + + TP
Sbjct: 120 ECDEREVNEIGSHVKHCK--GQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADE-TP 176
Query: 845 LHIACQNNNLSIVRL----LLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSG 898
L A + N + L + + ++ + +GN+ LH+A + N ++A ++ G
Sbjct: 177 LXRAXEFRNREALDLXXDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAXRFVEXG 234
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 827 INYRADINIVTRVKQ-LTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAIN 885
+ + AD+N V + TPL A N+L LL NVN D G LH+A I
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQ-NGANVNQADSAGRGPLHHATIL 278
Query: 886 NHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
HT LA L LK GA ++ G+ L +A + + +V +L
Sbjct: 279 GHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 539 DLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLA 595
+ +L+ GA+ N D G PLH+A GH + L L GA + D+EG L +A
Sbjct: 252 EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
N+N +S G LH AT LGH L L + AD+ + PL IA + N IV
Sbjct: 260 NVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG-ARDSEGRDPLTIAMETANADIVT 318
Query: 859 LLLAAK 864
LL AK
Sbjct: 319 LLRLAK 324
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%)
Query: 510 QSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQN 569
Q+ D G LH A + G + L L+ GAD ++D G PL A + +
Sbjct: 256 QNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANAD 315
Query: 570 VLLLL 574
++ LL
Sbjct: 316 IVTLL 320
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 827 INYRADINIVTRVKQ-LTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAIN 885
+ + AD+N V + TPL A N+L LL NVN D G LH+A I
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQ-NGANVNQADSAGRGPLHHATIL 278
Query: 886 NHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
HT LA L LK GA ++ G+ L +A + + +V +L
Sbjct: 279 GHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 539 DLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLA 595
+ +L+ GA+ N D G PLH+A GH + L L GA + D+EG L +A
Sbjct: 252 EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
N+N +S G LH AT LGH L L + AD+ + PL IA + N IV
Sbjct: 260 NVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG-ARDSEGRDPLTIAMETANADIVT 318
Query: 859 LLLAAK 864
LL AK
Sbjct: 319 LLRLAK 324
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%)
Query: 510 QSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQN 569
Q+ D G LH A + G + L L+ GAD ++D G PL A + +
Sbjct: 256 QNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANAD 315
Query: 570 VLLLL 574
++ LL
Sbjct: 316 IVTLL 320
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 827 INYRADINIVTRVK-QLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAIN 885
+ + AD+N V + TPL A N+L LL NVN D G LH+A I
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQ-NGANVNQADSAGRGPLHHATIL 278
Query: 886 NHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
HT LA L LK GA ++ G+ L +A + + +V +L
Sbjct: 279 GHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 539 DLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLA 595
+ +L+ GA+ N D G PLH+A GH + L L GA + D+EG L +A
Sbjct: 252 EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
N+N +S G LH AT LGH L L + AD+ + PL IA + N IV
Sbjct: 260 NVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG-ARDSEGRDPLTIAMETANADIVT 318
Query: 859 LLLAAK 864
LL AK
Sbjct: 319 LLRLAK 324
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%)
Query: 510 QSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQN 569
Q+ D G LH A + G + L L+ GAD ++D G PL A + +
Sbjct: 256 QNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANAD 315
Query: 570 VLLLL 574
++ LL
Sbjct: 316 IVTLL 320
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 31/64 (48%)
Query: 545 GADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCV 604
G D N G PLHYAA G +L LL GA IN D T L A GH +CV
Sbjct: 30 GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCV 89
Query: 605 KALI 608
K L+
Sbjct: 90 KLLL 93
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 526 LHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTD 585
LH AA G++++++ +L GAD N+ D +PL A GH + + LLL GA +
Sbjct: 44 LHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKG 103
Query: 586 NEGNTALHLATNNGHETCVKALI 608
+G TA AT+N +KAL+
Sbjct: 104 PDGLTAFE-ATDN---QAIKALL 122
Score = 34.7 bits (78), Expect = 0.27, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 619 NINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
++N G PLH AA G I++ LL GA+ +K +TPL +A
Sbjct: 32 DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSA 80
Score = 34.3 bits (77), Expect = 0.30, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Query: 844 PLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQI 903
PLH A L I+ LL K ++NA D T L A H + LLL GA +
Sbjct: 43 PLHYAADCGQLEILEFLLL-KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTV 101
Query: 904 KNHYGQTCLHMAQQMTSLSLVR 925
K G T +L++
Sbjct: 102 KGPDGLTAFEATDNQAIKALLQ 123
Score = 30.8 bits (68), Expect = 3.2, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++N G LH A G +++ L+ ADIN + +TPL A ++S V+
Sbjct: 32 DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDK-HHITPLLSAVYEGHVSCVK 90
Query: 859 LLLA 862
LLL+
Sbjct: 91 LLLS 94
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
+D G T LH A G ++V +++ G + N+ D G +PLH AA+ + V L+ SG
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126
Query: 579 ASI 581
A++
Sbjct: 127 AAV 129
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
+L ++EG TALH A GH VK L+ F +N+NA ++ G +PLH AA
Sbjct: 64 SLPNDEGITALHNAVCAGHTEIVKFLVQFG------VNVNAADSDGWTPLHCAASCNNVQ 117
Query: 642 IIQLLLDHGA 651
+ + L++ GA
Sbjct: 118 VCKFLVESGA 127
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 810 ALHIATSL-GHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNV 868
AL + +SL G +DLV+ +I Y D + + +T LH A + IV+ L+ NV
Sbjct: 39 ALLLDSSLEGEFDLVQRII-YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFG-VNV 96
Query: 869 NAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
NA D G T LH AA N+ + L++SGA
Sbjct: 97 NAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLL 861
N +G TALH A GH ++V+ L+ + ++N TPLH A NN+ + + L+
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADS-DGWTPLHCAASCNNVQVCKFLV 123
Score = 36.6 bits (83), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Query: 505 NLKHSQSKPTTQSMDDR--GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYA 562
NL+ + S+ M + +L ++L G +V ++ D + + G + LH A
Sbjct: 18 NLRKTGSERIAHGMRVKFNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNA 77
Query: 563 ATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALI 608
GH ++ L+ G ++N D++G T LH A + + K L+
Sbjct: 78 VCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV 123
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 624 NNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
N++G + LH A G+T I++ L+ G N + TPL A NN+ V K L
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 798 LNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVT 837
+N+N +SDG+T LH A S + + + L+ A + +T
Sbjct: 94 VNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT 133
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 25/61 (40%)
Query: 875 GNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPFV 934
G TALH A HT + L++ G + G T LH A ++ + + L V
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Query: 935 L 935
Sbjct: 130 F 130
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
+D G T LH A G ++V +++ G + N+ D G +PLH AA+ + V L+ SG
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126
Query: 579 ASI 581
A++
Sbjct: 127 AAV 129
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
+L ++EG TALH A GH VK L+ F +N+NA ++ G +PLH AA
Sbjct: 64 SLPNDEGITALHNAVCAGHTEIVKFLVQFG------VNVNAADSDGWTPLHCAASCNNVQ 117
Query: 642 IIQLLLDHGA 651
+ + L++ GA
Sbjct: 118 VCKFLVESGA 127
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 810 ALHIATSL-GHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNV 868
AL + +SL G +DLV+ +I Y D + + +T LH A + IV+ L+ NV
Sbjct: 39 ALLLDSSLEGEFDLVQRII-YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFG-VNV 96
Query: 869 NAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
NA D G T LH AA N+ + L++SGA
Sbjct: 97 NAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLL 861
N +G TALH A GH ++V+ L+ + ++N TPLH A NN+ + + L+
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADS-DGWTPLHCAASCNNVQVCKFLV 123
Score = 36.2 bits (82), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
++L G +V ++ D + + G + LH A GH ++ L+ G ++N D++G
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDG 103
Query: 589 NTALHLATNNGHETCVKALI 608
T LH A + + K L+
Sbjct: 104 WTPLHCAASCNNVQVCKFLV 123
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 624 NNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
N++G + LH A G+T I++ L+ G N + TPL A NN+ V K L
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 798 LNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVT 837
+N+N +SDG+T LH A S + + + L+ A + +T
Sbjct: 94 VNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT 133
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 25/61 (40%)
Query: 875 GNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPFV 934
G TALH A HT + L++ G + G T LH A ++ + + L V
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Query: 935 L 935
Sbjct: 130 F 130
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 31/64 (48%)
Query: 545 GADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCV 604
G D N G PLHYAA G +L LL GA IN D T L A GH +CV
Sbjct: 25 GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCV 84
Query: 605 KALI 608
K L+
Sbjct: 85 KLLL 88
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 526 LHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTD 585
LH AA G++++++ +L GAD N+ D +PL A GH + + LLL GA +
Sbjct: 39 LHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKG 98
Query: 586 NEGNTALHLATNNGHETCVKALI 608
+G TAL AT+N +KAL+
Sbjct: 99 PDGLTALE-ATDN---QAIKALL 117
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 844 PLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQI 903
PLH A L I+ LL K ++NA D T L A H + LLL GA +
Sbjct: 38 PLHYAADCGQLEILEFLLL-KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTV 96
Query: 904 KNHYGQTCLHMAQQMTSLSLVR 925
K G T L +L++
Sbjct: 97 KGPDGLTALEATDNQAIKALLQ 118
Score = 34.3 bits (77), Expect = 0.35, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 619 NINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
++N G PLH AA G I++ LL GA+ +K +TPL +A
Sbjct: 27 DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSA 75
Score = 30.8 bits (68), Expect = 4.1, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++N G LH A G +++ L+ ADIN + +TPL A ++S V+
Sbjct: 27 DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDK-HHITPLLSAVYEGHVSCVK 85
Query: 859 LLLA 862
LLL+
Sbjct: 86 LLLS 89
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 501 EEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLH 560
++A+ + S+P ++ G T LH A +VD ++ GA+ NS D G +PLH
Sbjct: 38 QQAVKEMNDPSQP-----NEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLH 92
Query: 561 YAATRGHQNVLLLLLHSGASINLTD-NEGNTAL 592
AA+ + + L+ GA+I T ++G TA
Sbjct: 93 CAASCNDTVICMALVQHGAAIFATTLSDGATAF 125
Score = 37.7 bits (86), Expect = 0.033, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 842 LTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
+T LH A N SIV L+ A NVN+ D G T LH AA N T + L++ GA
Sbjct: 55 ITALHNAICGANYSIVDFLITAG-ANVNSPDSHGWTPLHCAASCNDTVICMALVQHGA 111
Score = 37.0 bits (84), Expect = 0.045, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 41/80 (51%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
AAL G ++VV ++ D + + G + LH A + +++ L+ +GA++N D+ G
Sbjct: 28 AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87
Query: 589 NTALHLATNNGHETCVKALI 608
T LH A + AL+
Sbjct: 88 WTPLHCAASCNDTVICMALV 107
Score = 36.6 bits (83), Expect = 0.059, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 21/104 (20%)
Query: 563 ATRGHQNVLLLLLHSGASINLT---------------DNEGNTALHLATNNGHETCVKAL 607
A R N L+LLL + + L + EG TALH A + + V L
Sbjct: 14 ARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFL 73
Query: 608 IYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGA 651
I N+N+ ++ G +PLH AA T I L+ HGA
Sbjct: 74 I------TAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGA 111
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 20/158 (12%)
Query: 774 PLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADI 833
PL AK E+ V++ S+ + E ++ + G TALHIA + + +L+ ++
Sbjct: 6 PLLLAAK--ENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 834 NIVTRVKQL----TPLHIACQNNNLSIVRLLLAAKQCNVNAQD-------------YRGN 876
+L T LHIA N N+++VR LLA + +V+A+ Y G
Sbjct: 64 VFEPMTSELYEGQTALHIAVINQNVNLVRALLA-RGASVSARATGSVFHYRPHNLIYYGE 122
Query: 877 TALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHM 914
L +AA + LL++ GA + ++ G T LH+
Sbjct: 123 HPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHI 160
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 843 TPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA--- 899
+PL +A + N++ + LL + C V+ + G TALH AA+ ++ A +L+++
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 900 -RPQIKNHY-GQTCLHMAQQMTSLSLVRVL 927
P Y GQT LH+A +++LVR L
Sbjct: 65 FEPMTSELYEGQTALHIAVINQNVNLVRAL 94
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 20/171 (11%)
Query: 498 DDCEEAINLKHSQSKPTTQSMDDR---GFTVLHVAALYGRIKVVDLVLELGADTNSQDLC 554
D+ E A+ L + + + M G T LH+A + + +V +L GA +++
Sbjct: 48 DNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATG 107
Query: 555 -------------GCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHE 601
G PL +AA G + ++ LL+ GA I D+ GNT LH+ ++
Sbjct: 108 SVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNK 167
Query: 602 TCV----KALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLD 648
T L+ ++ + L NNQG +P A G + Q L+
Sbjct: 168 TFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQ 218
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 46/102 (45%), Gaps = 17/102 (16%)
Query: 843 TPLHIACQNNNLSIVRLLLAAKQCNV----NAQDYRGNTALHYAAINNHTNLATLLLKSG 898
T LHIA +NL +L+ A V ++ Y G TALH A IN + NL LL G
Sbjct: 39 TALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARG 98
Query: 899 A-------------RPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
A RP +YG+ L A + S +VR+L
Sbjct: 99 ASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLL 140
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 31/136 (22%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGAD-----TNSQDLCGCSPLHYAATRGHQNVLLLLLH 576
G T LH+AALY ++ +++E + S+ G + LH A + N++ LL
Sbjct: 37 GETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLA 96
Query: 577 SGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAAR 636
GAS+ + + H +N LIY+ G+ PL AA
Sbjct: 97 RGASV--SARATGSVFHYRPHN--------LIYY----------------GEHPLSFAAC 130
Query: 637 WGYTSIIQLLLDHGAN 652
G I++LL++HGA+
Sbjct: 131 VGSEEIVRLLIEHGAD 146
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 517 SMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDL-CGCSPLHYAATRGHQNVLLLLL 575
++D+ G T L A G K V L+ E GAD + +D+ G + LH AA V+ L+
Sbjct: 72 AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV 131
Query: 576 HSGASINLTDNEGNTALHLA 595
GA I + D G TAL LA
Sbjct: 132 ELGADIEVEDERGLTALELA 151
Score = 35.4 bits (80), Expect = 0.16, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Query: 557 SPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVL 616
+P AA + + L LL ++ D G TAL G + CV+ L +
Sbjct: 47 TPWWTAARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLL----AEAGA 101
Query: 617 NLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNL 670
+L+ + G + LH AA + +++ L++ GA+ +E++R +T L+ A +
Sbjct: 102 DLDHRDMRG-GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI 154
Score = 34.3 bits (77), Expect = 0.33, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+++ + +G TAL LG VRLL AD++ LT LH+A +V
Sbjct: 69 DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 128
Query: 859 LLLAAKQCNVNAQDYRGNTALHYA 882
L+ ++ +D RG TAL A
Sbjct: 129 ALVELG-ADIEVEDERGLTALELA 151
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 860 LLAAKQCNVNAQDYRGN-TALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
LLA +++ +D RG TALH AA + L++ GA ++++ G T L +A+++
Sbjct: 95 LLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI 154
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 517 SMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDL-CGCSPLHYAATRGHQNVLLLLL 575
++D+ G T L A G K V L+ E GAD + +D+ G + LH AA V+ L+
Sbjct: 71 AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV 130
Query: 576 HSGASINLTDNEGNTALHLA 595
GA I + D G TAL LA
Sbjct: 131 ELGADIEVEDERGLTALELA 150
Score = 35.4 bits (80), Expect = 0.16, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Query: 557 SPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVL 616
+P AA + + L LL ++ D G TAL G + CV+ L +
Sbjct: 46 TPWWTAARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLL----AEAGA 100
Query: 617 NLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNL 670
+L+ + G + LH AA + +++ L++ GA+ +E++R +T L+ A +
Sbjct: 101 DLDHRDMRG-GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI 153
Score = 34.3 bits (77), Expect = 0.33, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+++ + +G TAL LG VRLL AD++ LT LH+A +V
Sbjct: 68 DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 127
Query: 859 LLLAAKQCNVNAQDYRGNTALHYA 882
L+ ++ +D RG TAL A
Sbjct: 128 ALVELG-ADIEVEDERGLTALELA 150
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 860 LLAAKQCNVNAQDYRGN-TALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
LLA +++ +D RG TALH AA + L++ GA ++++ G T L +A+++
Sbjct: 94 LLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI 153
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 31/45 (68%)
Query: 620 INAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPL 664
+NA ++ GD+ L+ AAR G SI+ LLD+GA+P + NK + P+
Sbjct: 276 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPV 320
Score = 36.2 bits (82), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 517 SMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAA 563
+ D G T L++AA G I +VD +L+ GAD + G P+ + A
Sbjct: 278 AQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 868 VNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYG 908
+NAQD G+T L+ AA + ++ LL GA P I N G
Sbjct: 276 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSG 316
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 800 INICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTR 838
+N +S+G T L+IA LG+ +V L++Y AD I +
Sbjct: 276 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANK 314
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Query: 506 LKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATR 565
LK S T D G + + A +++V +L GA N L PLH AAT
Sbjct: 15 LKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL--LENEFPLHQAATL 72
Query: 566 GHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALI 608
++ +LL SG + D++GNTAL+ A ++G+ VK +
Sbjct: 73 EDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFV 115
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 5/127 (3%)
Query: 807 GYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQC 866
G++A + A + + LV L+N A N++ + PLH A + IV++LL +
Sbjct: 31 GHSASYYAIADNNVRLVCTLLNAGALKNLL---ENEFPLHQAATLEDTKIVKILLFSGLD 87
Query: 867 NVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYG-QTCLHMAQQMTSLSLVR 925
+ D +GNTAL+YA + + L +K R G +T + A + +S+V
Sbjct: 88 DSQFDD-KGNTALYYAVDSGNXQTVKLFVKKNWRLXFYGKTGWKTSFYHAVXLNDVSIVS 146
Query: 926 VLTHEAP 932
E P
Sbjct: 147 YFLSEIP 153
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 555 GCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQE 614
G +PL AA + +L L++S A +N D+ G +ALH A + L+
Sbjct: 15 GTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA-- 72
Query: 615 VLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGAN 652
N + NN+ ++PL AAR G ++LLDH AN
Sbjct: 73 ----NKDMQNNKEETPLFLAAREGSYETAKVLLDHFAN 106
Score = 34.3 bits (77), Expect = 0.37, Method: Composition-based stats.
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 843 TPLHIACQNNNLSIVRLL--LAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGAR 900
TPL +A + L++ +L L +VNA D G +ALH+AA N+ + A +LLK+GA
Sbjct: 17 TPLILAAR---LALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 73
Query: 901 PQIKNHYGQTCLHMAQQMTSLSLVRVL 927
++N+ +T L +A + S +VL
Sbjct: 74 KDMQNNKEETPLFLAAREGSYETAKVL 100
Score = 33.5 bits (75), Expect = 0.57, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
G T L +AA +++ ++ AD N+ D G S LH+AA + + ++LL +GA+
Sbjct: 15 GTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK 74
Query: 582 NLTDNEGNTALHLATNNG-HETCVKALIYFNEQEVLN 617
++ +N+ T L LA G +ET L +F +++ +
Sbjct: 75 DMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITD 111
Score = 33.1 bits (74), Expect = 0.66, Method: Composition-based stats.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 806 DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQ 865
DG T L +A L ++ LIN AD+N V + + + LH A NN+ +LL
Sbjct: 14 DGTTPLILAARLALEGMLEDLINSHADVNAVDDLGK-SALHWAAAVNNVDAAVVLL-KNG 71
Query: 866 CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVR 925
N + Q+ + T L AA A +LL A I +H + +AQ+ +VR
Sbjct: 72 ANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVR 131
Query: 926 VL 927
+L
Sbjct: 132 LL 133
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 586 NEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQL 645
++G T L LA E ++ LI + ++NAV++ G S LH AA +
Sbjct: 13 HDGTTPLILAARLALEGMLEDLINSHA------DVNAVDDLGKSALHWAAAVNNVDAAVV 66
Query: 646 LLDHGANPTLENKRKVTPL 664
LL +GAN ++N ++ TPL
Sbjct: 67 LLKNGANKDMQNNKEETPL 85
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
Query: 843 TPLHIACQN---NNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
T LH+A ++ +L IV L+ N++ Q +G+TALHY + ++ LLL+ A
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSG-NLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA 229
Query: 900 RPQIKNHYGQTCLHMAQQM 918
+I N G+T L +A+++
Sbjct: 230 SIEIANESGETPLDIAKRL 248
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 15/117 (12%)
Query: 524 TVLHVAAL---YGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGAS 580
T LH+A + +VD +++ + + Q G + LHY + L LLL AS
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230
Query: 581 INLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
I + + G T L +A HE C +E+L A++ + +S +H W
Sbjct: 231 IEIANESGETPLDIAKRLKHEHC---------EELLT---QALSGRFNSHVHVEYEW 275
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 525 VLHVA---ALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
VLH+A A + +VD +++ G +++ G + LHYAA + L LLL A +
Sbjct: 174 VLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALV 233
Query: 582 NLTDNEGNTALHLATNNGHETCVKAL 607
+ G TAL +A H+ C + L
Sbjct: 234 GTVNEAGETALDIARKKHHKECEELL 259
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 845 LHIACQNNNLSIVRLL--LAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQ 902
LH+A + N + + L+ + +++A+ GNTALHYAA+ N + LLLK A
Sbjct: 175 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 234
Query: 903 IKNHYGQTCLHMAQQ 917
N G+T L +A++
Sbjct: 235 TVNEAGETALDIARK 249
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 69/153 (45%), Gaps = 26/153 (16%)
Query: 521 RGFTVLHVAALYGRIKVVDLVLELGADTN----------SQDLC---GCSPLHYAATRGH 567
+G + LH+A ++ V L++E GAD + Q C G PL AA
Sbjct: 102 QGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 161
Query: 568 QNVLLLLL---HSGASINLTDNEGNTALH----LATNNGHETCV-----KALIYFNEQEV 615
+V+ LL H AS+ TD+ GNT LH +A N+ + + L+ +
Sbjct: 162 WDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLC 221
Query: 616 LNLNINAVNN-QGDSPLHAAARWGYTSIIQLLL 647
+ + ++N QG +PL AA+ G I + +L
Sbjct: 222 PTVQLEEISNHQGLTPLKLAAKEGKIEIFRHIL 254
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 64/149 (42%), Gaps = 30/149 (20%)
Query: 807 GYTALHIATSLGHYDLVRLLINYRADINIVT-----RVKQLT-------PLHIACQNNNL 854
G++ALHIA V+LL+ AD+++ + Q T PL +A
Sbjct: 103 GHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW 162
Query: 855 SIVRLLL--AAKQCNVNAQDYRGNTALH---YAAINNHTNLATL------LLKSGAR--- 900
+V LL + ++ A D GNT LH A N+ N A + LL+ GAR
Sbjct: 163 DVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCP 222
Query: 901 ----PQIKNHYGQTCLHMAQQMTSLSLVR 925
+I NH G T L +A + + + R
Sbjct: 223 TVQLEEISNHQGLTPLKLAAKEGKIEIFR 251
>pdb|2OT3|A Chain A, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 274
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 76/168 (45%), Gaps = 9/168 (5%)
Query: 240 IDSIKLAVETYMHHGIYKTLIKGITACTALEDAQFNKMIRNLSDI--QLKDLDIREDL-- 295
++ I +E Y+ +YK + T +D K IR L + Q+ + + ED+
Sbjct: 81 VEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALRWVTPQMLCVPVNEDIPE 140
Query: 296 -YDTVPRARSEISHIDCYSTILGKIGCVRRCISAISKEDTRDKLQGNIITVDDLLPMIVF 354
D V +A ++I +D K+ C+ +C I + + + DD LP +++
Sbjct: 141 VSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIF--NAIKITKNEPASADDFLPTLIY 198
Query: 355 LVVKCALPNWIAHLTYMKQFHFSQSSNVCIDQDSFLITSLEASIEHIK 402
+V+K P +++ Y+ + F S + +D + T+L ++ I+
Sbjct: 199 IVLKGNPPRLQSNIQYITR--FCNPSRLMTGEDGYYFTNLCCAVAFIE 244
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 32/140 (22%)
Query: 515 TQSMDD--RGFTVLHVAALYGRIKVVDLVLELGADTNS----------QDLC---GCSPL 559
Q DD RG + LH+A ++ V L++E GA+ ++ Q C G PL
Sbjct: 86 AQCTDDYYRGHSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPL 145
Query: 560 HYAATRGHQNVLLLLL---HSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVL 616
AA +V+ LL H AS+ TD++GNT LH AL+ ++
Sbjct: 146 SLAACTKQWDVVSYLLENPHQPASLQATDSQGNTVLH------------ALVXISDNSAE 193
Query: 617 NLNINAVNNQGDSPLHAAAR 636
N+ + V + D L A AR
Sbjct: 194 NIAL--VTSXYDGLLQAGAR 211
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 23/117 (19%)
Query: 807 GYTALHIATSLGHYDLVRLLINYRADIN--IVTRVKQLT----------PLHIACQNNNL 854
G++ALHIA V+LL+ A+++ R Q PL +A
Sbjct: 95 GHSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAACTKQW 154
Query: 855 SIVRLLL--AAKQCNVNAQDYRGNTALHYAAI---NNHTNLATL------LLKSGAR 900
+V LL + ++ A D +GNT LH N+ N+A + LL++GAR
Sbjct: 155 DVVSYLLENPHQPASLQATDSQGNTVLHALVXISDNSAENIALVTSXYDGLLQAGAR 211
>pdb|1TXU|A Chain A, Crystal Structure Of The Vps9 Domain Of Rabex-5
Length = 273
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 74/168 (44%), Gaps = 9/168 (5%)
Query: 240 IDSIKLAVETYMHHGIYKTLIKGITACTALEDAQFNKMIRNLSDIQLKDL--DIREDL-- 295
++ I +E Y+ +YK + T +D K IR L + + L + ED+
Sbjct: 83 VEKIXDQIEKYIXTRLYKYVFCPETTDDEKKDLAIQKRIRALRWVTPQXLCVPVNEDIPE 142
Query: 296 -YDTVPRARSEISHIDCYSTILGKIGCVRRCISAISKEDTRDKLQGNIITVDDLLPMIVF 354
D V +A ++I D K+ C+ +C I + + + DD LP +++
Sbjct: 143 VSDXVVKAITDIIEXDSKRVPRDKLACITKCSKHIF--NAIKITKNEPASADDFLPTLIY 200
Query: 355 LVVKCALPNWIAHLTYMKQFHFSQSSNVCIDQDSFLITSLEASIEHIK 402
+V+K P +++ Y+ + F S + +D + T+L ++ I+
Sbjct: 201 IVLKGNPPRLQSNIQYITR--FCNPSRLXTGEDGYYFTNLCCAVAFIE 246
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 531 LYGRIKVVDLVLELGADTNSQDLCGCS-PLHYAATRGHQNVLLLLLHSGASINLTDNEGN 589
+ G +V +L+L GA+ N D + P+H AA G + L++L +GA +++ D G
Sbjct: 53 MMGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGR 112
Query: 590 TALHLATNNGHETCVKAL 607
+ LA GH + L
Sbjct: 113 LPVDLAEEQGHRDIARYL 130
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 69/153 (45%), Gaps = 26/153 (16%)
Query: 521 RGFTVLHVAALYGRIKVVDLVLELGADTN----------SQDLC---GCSPLHYAATRGH 567
+G + LH+A ++ V L++E GAD + Q C G PL AA
Sbjct: 89 QGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 148
Query: 568 QNVLLLLL---HSGASINLTDNEGNTALH----LATNNGHETCV-----KALIYFNEQEV 615
+V+ LL H AS+ TD+ GNT LH +A N+ + + L+ +
Sbjct: 149 WDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLC 208
Query: 616 LNLNINAVNN-QGDSPLHAAARWGYTSIIQLLL 647
+ + ++N QG +PL AA+ G I + +L
Sbjct: 209 PTVQLEEISNHQGLTPLKLAAKEGKIEIFRHIL 241
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 63/149 (42%), Gaps = 30/149 (20%)
Query: 807 GYTALHIATSLGHYDLVRLLINYRADINI--VTRVKQL----------TPLHIACQNNNL 854
G++ALHIA V+LL+ AD+++ R Q PL +A
Sbjct: 90 GHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW 149
Query: 855 SIVRLLL--AAKQCNVNAQDYRGNTALH---YAAINNHTNLATL------LLKSGAR--- 900
+V LL + ++ A D GNT LH A N+ N A + LL+ GAR
Sbjct: 150 DVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCP 209
Query: 901 ----PQIKNHYGQTCLHMAQQMTSLSLVR 925
+I NH G T L +A + + + R
Sbjct: 210 TVQLEEISNHQGLTPLKLAAKEGKIEIFR 238
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 525 VLHVA---ALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
VLH+A A + +VD +++ G +++ G + LHYAA + L LLL A +
Sbjct: 193 VLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALV 252
Query: 582 NLTDNEGNTALHLATNNGHETCVKAL 607
+ G TAL +A H+ C + L
Sbjct: 253 GTVNEAGETALDIARKKHHKECEELL 278
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 845 LHIACQNNNLSIVRLL--LAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQ 902
LH+A + N + + L+ + +++A+ GNTALHYAA+ N + LLLK A
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 253
Query: 903 IKNHYGQTCLHMAQQ 917
N G+T L +A++
Sbjct: 254 TVNEAGETALDIARK 268
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 15/89 (16%)
Query: 807 GYTALHIATSLGHYDLVRLLINYRADI------NIVTRVKQLT-------PLHIACQNNN 853
G TALHIA + LV LL+ AD+ + + K PL +A N
Sbjct: 101 GQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ 160
Query: 854 LSIVRLLL--AAKQCNVNAQDYRGNTALH 880
L+IV+ LL + + +++A+D GNT LH
Sbjct: 161 LAIVKFLLQNSWQPADISARDSVGNTVLH 189
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 60/154 (38%), Gaps = 27/154 (17%)
Query: 521 RGFTVLHVAALYGRIKVVDLVLELGADTNSQD--------------LCGCSPLHYAATRG 566
+G T LH+A +V L++E GAD + G PL AA
Sbjct: 100 KGQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN 159
Query: 567 HQNVLLLLLHSG---ASINLTDNEGNTALHL---ATNNGHETCVKALIYFNEQEVLNLNI 620
++ LL + A I+ D+ GNT LH +N + +NE +L +
Sbjct: 160 QLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSXYNEILILGAKL 219
Query: 621 NA-------VNNQGDSPLHAAARWGYTSIIQLLL 647
+ N +G +PL AA G ++ +L
Sbjct: 220 HPTLKLEEITNRKGLTPLALAASSGKIGVLAYIL 253
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 18/71 (25%)
Query: 873 YRGNTALHYAAINNHTNLATLLLKSGA----------------RPQIKNHYGQTCLHMAQ 916
Y+G TALH A + L TLL+++GA RP ++G+ L +A
Sbjct: 99 YKGQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGF--YFGELPLSLAA 156
Query: 917 QMTSLSLVRVL 927
L++V+ L
Sbjct: 157 CTNQLAIVKFL 167
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 531 LYGRIKVVDLVLELGADTNSQDLCGCS-PLHYAATRGHQNVLLLLLHSGASINLTDNEGN 589
+ G +V +L+L GA+ N D + P+H AA G + L++L +GA +++ D G
Sbjct: 53 MMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGR 112
Query: 590 TALHLATNNGHETCVKAL 607
+ LA GH + L
Sbjct: 113 LPVDLAEELGHRDVARYL 130
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 531 LYGRIKVVDLVLELGADTNSQDLCGCS-PLHYAATRGHQNVLLLLLHSGASINLTDNEGN 589
+ G +V +L+L GA+ N D + P+H AA G + L++L +GA +++ D G
Sbjct: 53 MMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGR 112
Query: 590 TALHLATNNGHETCVKAL 607
+ LA GH + L
Sbjct: 113 LPVDLAEELGHRDVARYL 130
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 65/155 (41%), Gaps = 35/155 (22%)
Query: 521 RGFTVLHVAALYGRIKVVDLVLELGADTNSQD--------------LCGCSPLHYAATRG 566
RG T LH+A V+L++E GAD ++Q G PL AA
Sbjct: 92 RGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTN 151
Query: 567 HQNVLLLLLHSG---ASINLTDNEGNTALH----LATNNGHETCVKALIYFNEQEVL--- 616
+++ L +G A + D+ GNT LH +A N T +Y ++L
Sbjct: 152 QPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMY----DLLLIK 207
Query: 617 ------NLNINAV-NNQGDSPLHAAARWGYTSIIQ 644
+ N+ A+ NN G SPL AA+ G I Q
Sbjct: 208 CAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQ 242
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 37/89 (41%), Gaps = 15/89 (16%)
Query: 807 GYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTP-------------LHIACQNNN 853
G TALHIA V LL+ AD++ R + P L +A N
Sbjct: 93 GQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQ 152
Query: 854 LSIVRLLL--AAKQCNVNAQDYRGNTALH 880
IV L KQ ++ QD RGNT LH
Sbjct: 153 PHIVHYLTENGHKQADLRRQDSRGNTVLH 181
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 37.0 bits (84), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 83/203 (40%), Gaps = 43/203 (21%)
Query: 473 RAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALY 532
+A+L N + D+ +P+ D E N++ + P + + RG T LH+A
Sbjct: 50 KALLNLSNGRNDT--IPVL-----LDIAERTGNMREFINSPF-RDIYYRGQTALHIAIER 101
Query: 533 GRIKVVDLVLELGADTNSQD--------------LCGCSPLHYAATRGHQNVLLLLL--- 575
V+L++ GAD ++Q G PL AA +++ L
Sbjct: 102 RCKHYVELLVAQGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVNYLTENP 161
Query: 576 HSGASINLTDNEGNTALH----LATNNGHETCVKALIYFNEQEVLNL---------NINA 622
H A + D+ GNT LH +A N T +Y ++L L N+ A
Sbjct: 162 HKKADMRRQDSRGNTVLHALVAIADNTRENTKFVTKMY----DLLLLKCARLFPDSNLEA 217
Query: 623 V-NNQGDSPLHAAARWGYTSIIQ 644
V NN G SPL AA+ G I Q
Sbjct: 218 VLNNDGLSPLMMAAKTGKIGIFQ 240
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 15/89 (16%)
Query: 807 GYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLT-------------PLHIACQNNN 853
G TALHIA V LL+ AD++ R + PL +A N
Sbjct: 91 GQTALHIAIERRCKHYVELLVAQGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQ 150
Query: 854 LSIVRLLL--AAKQCNVNAQDYRGNTALH 880
IV L K+ ++ QD RGNT LH
Sbjct: 151 PHIVNYLTENPHKKADMRRQDSRGNTVLH 179
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 15/81 (18%)
Query: 17 GVFSELQTGTMESTYDEDLSENIFFKALKTEHGELFEKATQDGWIICIPRVCSLPKYALT 76
G+ + +QT T++ + + +E I F+ L H LFE ++ LT
Sbjct: 43 GILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDEN---------------RLT 87
Query: 77 YEDFFNHILIPSEELPETHFR 97
+DF + +P LP + R
Sbjct: 88 RDDFLGQVDVPLYPLPTENPR 108
>pdb|1LOH|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase In Complex With
Hexasaccharide Hyaluronan Substrate
pdb|1LXK|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase In Complex With
Tetrasaccharide Hyaluronan Substrate
Length = 721
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 32/64 (50%)
Query: 269 LEDAQFNKMIRNLSDIQLKDLDIREDLYDTVPRARSEISHIDCYSTILGKIGCVRRCISA 328
++ A FN+MI+ L +++ + + +YD + + D STI + ++R +
Sbjct: 632 VDRATFNQMIKELESSLIENNETLQSVYDAKQGVWGIVKYDDSVSTISNQFQVLKRGVYT 691
Query: 329 ISKE 332
I KE
Sbjct: 692 IRKE 695
>pdb|1OJN|A Chain A, Specificity And Mechanism Of Streptococcus Pneumoniae
Hyaluronate Lyase: Complex Of The Tyr408phe Mutant With
6-sulphated Chondroitin Disaccharide
Length = 731
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 32/64 (50%)
Query: 269 LEDAQFNKMIRNLSDIQLKDLDIREDLYDTVPRARSEISHIDCYSTILGKIGCVRRCISA 328
++ A FN+MI+ L +++ + + +YD + + D STI + ++R +
Sbjct: 634 VDRATFNQMIKELESSLIENNETLQSVYDAKQGVWGIVKYDDSVSTISNQFQVLKRGVYT 693
Query: 329 ISKE 332
I KE
Sbjct: 694 IRKE 697
>pdb|1EGU|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase At 1.56 A Resolution
pdb|1F9G|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase Cocrystallized With Ascorbic Acid
pdb|1C82|A Chain A, Mechanism Of Hyaluronan Binding And Degradation: Structure
Of Streptococcus Pneumoniae Hyaluronate Lyase In Complex
With Hyaluronic Acid Disaccharide At 1.7 A Resolution
pdb|1OJP|A Chain A, Specificity And Mechanism Of Streptococcus Pneumoniae
Hyaluronate Lyase: Complex With 6-sulphated Chondroitin
Disaccharide
pdb|1W3Y|A Chain A, Crystal Structure Of S. Pneumoniae Hyaluronate Lyase In
Complex With Palmitoyl-Vitamin C
pdb|2BRP|A Chain A, Crystal Structure Of S.Pneumoniae Hyaluronate Lyase In
Complex With W249b
pdb|2BRV|X Chain X, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase From 70percent Saturated Malonate.
pdb|2BRW|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase From 30percent Pegmme.
pdb|2BRW|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase From 30percent Pegmme
Length = 731
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 32/64 (50%)
Query: 269 LEDAQFNKMIRNLSDIQLKDLDIREDLYDTVPRARSEISHIDCYSTILGKIGCVRRCISA 328
++ A FN+MI+ L +++ + + +YD + + D STI + ++R +
Sbjct: 634 VDRATFNQMIKELESSLIENNETLQSVYDAKQGVWGIVKYDDSVSTISNQFQVLKRGVYT 693
Query: 329 ISKE 332
I KE
Sbjct: 694 IRKE 697
>pdb|1N7O|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase F343v Mutant
Length = 721
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 32/64 (50%)
Query: 269 LEDAQFNKMIRNLSDIQLKDLDIREDLYDTVPRARSEISHIDCYSTILGKIGCVRRCISA 328
++ A FN+MI+ L +++ + + +YD + + D STI + ++R +
Sbjct: 632 VDRATFNQMIKELESSLIENNETLQSVYDAKQGVWGIVKYDDSVSTISNQFQVLKRGVYT 691
Query: 329 ISKE 332
I KE
Sbjct: 692 IRKE 695
>pdb|1OJM|A Chain A, Specificity And Mechanism Of Streptococcus Pneumoniae
Hyaluronate Lyase: Complex With Unsulphated Chondroitin
Disaccharide
Length = 729
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 32/64 (50%)
Query: 269 LEDAQFNKMIRNLSDIQLKDLDIREDLYDTVPRARSEISHIDCYSTILGKIGCVRRCISA 328
++ A FN+MI+ L +++ + + +YD + + D STI + ++R +
Sbjct: 632 VDRATFNQMIKELESSLIENNETLQSVYDAKQGVWGIVKYDDSVSTISNQFQVLKRGVYT 691
Query: 329 ISKE 332
I KE
Sbjct: 692 IRKE 695
>pdb|1N7N|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase W292a Mutant
Length = 721
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 32/64 (50%)
Query: 269 LEDAQFNKMIRNLSDIQLKDLDIREDLYDTVPRARSEISHIDCYSTILGKIGCVRRCISA 328
++ A FN+MI+ L +++ + + +YD + + D STI + ++R +
Sbjct: 632 VDRATFNQMIKELESSLIENNETLQSVYDAKQGVWGIVKYDDSVSTISNQFQVLKRGVYT 691
Query: 329 ISKE 332
I KE
Sbjct: 692 IRKE 695
>pdb|1N7P|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase W292aF343V
Double Mutant
Length = 721
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 32/64 (50%)
Query: 269 LEDAQFNKMIRNLSDIQLKDLDIREDLYDTVPRARSEISHIDCYSTILGKIGCVRRCISA 328
++ A FN+MI+ L +++ + + +YD + + D STI + ++R +
Sbjct: 632 VDRATFNQMIKELESSLIENNETLQSVYDAKQGVWGIVKYDDSVSTISNQFQVLKRGVYT 691
Query: 329 ISKE 332
I KE
Sbjct: 692 IRKE 695
>pdb|1OJO|A Chain A, Specificity And Mechanism Of Streptococcus Pneumoniae
Hyaluronate Lyase: Complex Of The Tyr408phe Mutant With
4-sulphated Chondroitin Disaccharide
Length = 731
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 32/64 (50%)
Query: 269 LEDAQFNKMIRNLSDIQLKDLDIREDLYDTVPRARSEISHIDCYSTILGKIGCVRRCISA 328
++ A FN+MI+ L +++ + + +YD + + D STI + ++R +
Sbjct: 634 VDRATFNQMIKELESSLIENNETLQSVYDAKQGVWGIVKYDDSVSTISNQFQVLKRGVYT 693
Query: 329 ISKE 332
I KE
Sbjct: 694 IRKE 697
>pdb|1N7R|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase
W291a/w292a/f343v Mutant Complex With Hexasaccharide
Hyaluronan
Length = 721
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 32/64 (50%)
Query: 269 LEDAQFNKMIRNLSDIQLKDLDIREDLYDTVPRARSEISHIDCYSTILGKIGCVRRCISA 328
++ A FN+MI+ L +++ + + +YD + + D STI + ++R +
Sbjct: 632 VDRATFNQMIKELESSLIENNETLQSVYDAKQGVWGIVKYDDSVSTISNQFQVLKRGVYT 691
Query: 329 ISKE 332
I KE
Sbjct: 692 IRKE 695
>pdb|1N7Q|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase W291aW292A
DOUBLE MUTANT Complex With Hyaluronan Hexasacchride
Length = 721
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 32/64 (50%)
Query: 269 LEDAQFNKMIRNLSDIQLKDLDIREDLYDTVPRARSEISHIDCYSTILGKIGCVRRCISA 328
++ A FN+MI+ L +++ + + +YD + + D STI + ++R +
Sbjct: 632 VDRATFNQMIKELESSLIENNETLQSVYDAKQGVWGIVKYDDSVSTISNQFQVLKRGVYT 691
Query: 329 ISKE 332
I KE
Sbjct: 692 IRKE 695
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,097,855
Number of Sequences: 62578
Number of extensions: 1122011
Number of successful extensions: 4344
Number of sequences better than 100.0: 135
Number of HSP's better than 100.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2634
Number of HSP's gapped (non-prelim): 856
length of query: 936
length of database: 14,973,337
effective HSP length: 108
effective length of query: 828
effective length of database: 8,214,913
effective search space: 6801947964
effective search space used: 6801947964
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)