Query psy8454
Match_columns 936
No_of_seqs 516 out of 3071
Neff 9.5
Searched_HMMs 29240
Date Fri Aug 16 19:18:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8454.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8454hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 2.1E-53 7.1E-58 489.0 39.8 389 452-930 10-399 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 7.3E-51 2.5E-55 467.8 36.3 365 514-935 6-371 (437)
3 4g8k_A 2-5A-dependent ribonucl 100.0 1.5E-43 5.1E-48 391.9 33.3 301 520-935 23-328 (337)
4 3utm_A Tankyrase-1; tankyrase, 100.0 2.9E-42 1E-46 383.7 36.8 311 518-933 20-334 (351)
5 4g8k_A 2-5A-dependent ribonucl 100.0 4.3E-42 1.5E-46 380.2 35.5 301 455-904 24-330 (337)
6 1wdy_A 2-5A-dependent ribonucl 100.0 3.4E-41 1.2E-45 363.1 33.0 270 521-935 4-280 (285)
7 1wdy_A 2-5A-dependent ribonucl 100.0 3.6E-40 1.2E-44 355.1 35.1 266 455-906 4-284 (285)
8 2fo1_E LIN-12 protein; beta-ba 100.0 5.8E-41 2E-45 375.9 20.2 134 800-933 228-371 (373)
9 3utm_A Tankyrase-1; tankyrase, 100.0 8.4E-39 2.9E-43 355.7 33.5 327 454-920 22-351 (351)
10 3d9h_A CDNA FLJ77766, highly s 100.0 2.1E-39 7E-44 349.1 25.9 258 519-935 12-281 (285)
11 2xai_A ASB-9, ankyrin repeat a 100.0 1.9E-38 6.5E-43 337.2 22.4 249 521-928 2-258 (261)
12 3ljn_A Hypothetical protein; a 100.0 4.3E-39 1.5E-43 360.2 18.2 267 514-931 12-312 (364)
13 3d9h_A CDNA FLJ77766, highly s 100.0 6.5E-38 2.2E-42 337.4 25.5 269 454-903 13-282 (285)
14 1yyh_A HN1;, notch 1, ankyrin 100.0 5.2E-38 1.8E-42 332.2 23.5 216 564-933 32-248 (253)
15 2fo1_E LIN-12 protein; beta-ba 100.0 1.2E-38 4.2E-43 357.0 19.1 285 436-900 73-371 (373)
16 1oy3_D Transcription factor in 100.0 1.1E-37 3.7E-42 335.4 24.2 265 516-920 3-270 (282)
17 2ot3_A RAB5 GDP/GTP exchange f 100.0 2.8E-37 9.7E-42 321.7 21.6 232 160-404 10-246 (274)
18 1k1a_A B-cell lymphoma 3-encod 100.0 3.5E-37 1.2E-41 323.2 22.2 132 801-933 110-241 (241)
19 1yyh_A HN1;, notch 1, ankyrin 100.0 6.6E-37 2.3E-41 323.7 23.2 231 514-898 2-246 (253)
20 3b7b_A Euchromatic histone-lys 100.0 2.8E-36 9.6E-41 315.5 27.3 126 802-929 106-231 (237)
21 1k1a_A B-cell lymphoma 3-encod 100.0 1.5E-36 5E-41 318.5 22.6 234 516-899 3-240 (241)
22 2efe_A Similarity to vacuolar 100.0 9E-37 3.1E-41 318.1 20.4 230 165-404 8-242 (267)
23 2xai_A ASB-9, ankyrin repeat a 100.0 2.9E-36 1E-40 320.3 24.7 220 554-932 2-221 (261)
24 3ljn_A Hypothetical protein; a 100.0 4.9E-37 1.7E-41 343.5 19.2 249 545-933 10-269 (364)
25 3b7b_A Euchromatic histone-lys 100.0 1.5E-35 5E-40 310.1 28.4 229 514-896 3-231 (237)
26 3aji_A 26S proteasome non-ATPa 100.0 1.1E-35 3.8E-40 309.6 23.8 128 804-933 103-230 (231)
27 3aji_A 26S proteasome non-ATPa 100.0 3.8E-35 1.3E-39 305.6 24.4 227 520-901 4-231 (231)
28 1s70_B 130 kDa myosin-binding 100.0 5.4E-36 1.8E-40 325.3 17.6 158 462-649 4-161 (299)
29 4b93_B Ankyrin repeat domain-c 100.0 4.4E-36 1.5E-40 319.3 15.3 230 518-902 7-246 (269)
30 4b93_B Ankyrin repeat domain-c 100.0 3.6E-36 1.2E-40 319.9 14.6 228 550-932 6-243 (269)
31 2dzn_A Probable 26S proteasome 100.0 7.7E-35 2.6E-39 302.6 23.7 223 555-930 2-227 (228)
32 3eu9_A Huntingtin-interacting 100.0 2.6E-34 8.8E-39 300.9 26.2 125 806-932 108-234 (240)
33 3kea_A K1L; tropism, ANK repea 100.0 2.2E-35 7.5E-40 317.6 17.9 242 516-924 25-268 (285)
34 3eu9_A Huntingtin-interacting 100.0 3E-34 1E-38 300.4 25.9 233 517-903 4-238 (240)
35 3kea_A K1L; tropism, ANK repea 100.0 4E-35 1.4E-39 315.5 18.5 233 534-933 12-246 (285)
36 1oy3_D Transcription factor in 100.0 3.4E-34 1.2E-38 308.0 23.7 254 450-886 3-269 (282)
37 2f8y_A Notch homolog 1, transl 100.0 4.9E-34 1.7E-38 295.4 22.9 127 804-932 89-215 (223)
38 2f8y_A Notch homolog 1, transl 100.0 6.6E-34 2.3E-38 294.5 22.9 217 532-902 1-218 (223)
39 2dzn_A Probable 26S proteasome 100.0 1.4E-33 4.7E-38 293.2 22.8 219 522-896 2-226 (228)
40 1sw6_A Regulatory protein SWI6 100.0 9.9E-35 3.4E-39 318.9 7.1 257 532-919 29-327 (327)
41 1s70_B 130 kDa myosin-binding 100.0 1.3E-32 4.5E-37 298.5 21.7 123 455-610 39-161 (299)
42 1ikn_D Protein (I-kappa-B-alph 100.0 3.1E-33 1.1E-37 292.2 10.7 118 801-919 111-230 (236)
43 2rfa_A Transient receptor pote 100.0 1.5E-31 5E-36 278.7 22.6 214 554-904 2-226 (232)
44 2rfa_A Transient receptor pote 100.0 2.3E-31 7.9E-36 277.2 21.7 200 587-934 2-223 (232)
45 1ikn_D Protein (I-kappa-B-alph 100.0 1.4E-32 4.8E-37 287.3 10.3 220 518-886 4-230 (236)
46 3hra_A Ankyrin repeat family p 100.0 3.8E-30 1.3E-34 261.5 24.9 193 586-931 3-201 (201)
47 4gpm_A Engineered protein OR26 100.0 1.2E-30 4.1E-35 255.8 20.3 158 741-935 6-163 (169)
48 2pnn_A Transient receptor pote 100.0 4E-31 1.4E-35 282.8 15.7 230 548-912 6-271 (273)
49 1sw6_A Regulatory protein SWI6 100.0 6.9E-33 2.4E-37 304.2 0.9 283 441-886 31-327 (327)
50 2pnn_A Transient receptor pote 100.0 4.5E-31 1.6E-35 282.3 13.5 217 577-932 2-257 (273)
51 2etb_A Transient receptor pote 100.0 1.1E-30 3.9E-35 276.4 16.3 211 555-901 2-247 (256)
52 2etb_A Transient receptor pote 100.0 8.1E-31 2.8E-35 277.5 14.6 204 587-933 1-246 (256)
53 3hra_A Ankyrin repeat family p 100.0 2.5E-29 8.6E-34 255.4 24.3 95 802-898 101-201 (201)
54 4gpm_A Engineered protein OR26 100.0 9.2E-29 3.1E-33 242.3 20.8 159 458-655 6-164 (169)
55 3jxi_A Vanilloid receptor-rela 100.0 9.2E-30 3.2E-34 270.1 13.2 133 800-933 86-250 (260)
56 3jxi_A Vanilloid receptor-rela 100.0 3.7E-29 1.3E-33 265.4 14.3 214 554-902 4-252 (260)
57 4hbd_A KN motif and ankyrin re 100.0 2.1E-28 7.3E-33 261.5 15.7 192 589-933 77-275 (276)
58 2rfm_A Putative ankyrin repeat 99.9 1.4E-27 4.8E-32 240.6 17.2 129 801-931 62-190 (192)
59 2y1l_E Darpin-8.4; hydrolase-i 99.9 6E-27 2.1E-31 230.6 20.2 162 733-931 8-169 (169)
60 3v31_A Ankyrin repeat family A 99.9 3.4E-27 1.2E-31 231.9 17.5 134 800-935 29-162 (167)
61 2aja_A Ankyrin repeat family p 99.9 6.5E-30 2.2E-34 282.9 -3.1 74 853-929 293-370 (376)
62 1ihb_A P18-INK4C(INK6), cyclin 99.9 1.4E-26 4.9E-31 226.1 17.6 158 738-933 4-162 (162)
63 3v30_A DNA-binding protein rfx 99.9 1.3E-26 4.6E-31 228.9 16.8 159 740-934 3-161 (172)
64 3twr_A Tankyrase-2; ankyrin re 99.9 2.8E-26 9.7E-31 224.8 17.1 160 736-932 5-164 (165)
65 4hbd_A KN motif and ankyrin re 99.9 9.3E-27 3.2E-31 248.8 14.8 94 804-898 180-273 (276)
66 1awc_B Protein (GA binding pro 99.9 6.5E-26 2.2E-30 219.2 18.7 150 740-927 3-152 (153)
67 3v30_A DNA-binding protein rfx 99.9 3.9E-26 1.4E-30 225.5 16.3 169 457-663 3-171 (172)
68 2aja_A Ankyrin repeat family p 99.9 1.8E-28 6E-33 271.5 -3.4 173 440-657 77-255 (376)
69 3f6q_A Integrin-linked protein 99.9 5.2E-26 1.8E-30 226.2 14.7 162 738-935 4-165 (179)
70 1bd8_A P19INK4D CDK4/6 inhibit 99.9 2.1E-25 7E-30 216.4 18.3 154 739-930 2-155 (156)
71 1ihb_A P18-INK4C(INK6), cyclin 99.9 2.4E-25 8.1E-30 217.4 17.7 159 455-652 4-162 (162)
72 2rfm_A Putative ankyrin repeat 99.9 3E-25 1E-29 223.5 18.9 169 443-650 22-190 (192)
73 2vge_A RELA-associated inhibit 99.9 1.9E-28 6.5E-33 253.8 -5.0 119 804-926 84-206 (229)
74 2y1l_E Darpin-8.4; hydrolase-i 99.9 6.4E-25 2.2E-29 216.1 20.2 158 454-650 12-169 (169)
75 2vge_A RELA-associated inhibit 99.9 1.7E-27 5.8E-32 246.6 1.1 144 518-667 17-163 (229)
76 1d9s_A Cyclin-dependent kinase 99.9 1.1E-25 3.8E-30 212.8 13.5 134 797-933 2-136 (136)
77 3f6q_A Integrin-linked protein 99.9 4.6E-25 1.6E-29 219.4 16.3 168 455-660 4-171 (179)
78 3v31_A Ankyrin repeat family A 99.9 1.3E-24 4.4E-29 213.4 18.1 158 456-652 3-160 (167)
79 1awc_B Protein (GA binding pro 99.9 2.5E-24 8.4E-29 208.0 19.6 150 457-646 3-152 (153)
80 3twr_A Tankyrase-2; ankyrin re 99.9 7E-25 2.4E-29 214.9 14.8 160 453-651 5-164 (165)
81 1bd8_A P19INK4D CDK4/6 inhibit 99.9 7.9E-24 2.7E-28 205.2 18.6 154 456-649 2-155 (156)
82 1ycs_B 53BP2, P53BP2; ankyrin 99.9 3.8E-25 1.3E-29 231.0 9.3 106 801-908 64-172 (239)
83 2jab_A H10-2-G3; HER2, darpin, 99.9 5.9E-24 2E-28 200.8 13.6 127 803-931 10-136 (136)
84 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.9E-23 6.6E-28 194.2 15.9 126 806-933 1-126 (126)
85 3t8k_A Uncharacterized protein 99.9 1.2E-24 3.9E-29 217.0 7.6 152 740-930 7-176 (186)
86 3c5r_A BARD-1, BRCA1-associate 99.9 2.4E-24 8E-29 203.9 8.5 134 797-933 1-134 (137)
87 1bi7_B P16INK4A, MTS1, multipl 99.9 7.2E-24 2.5E-28 205.5 12.1 131 801-934 6-137 (156)
88 1bi7_B P16INK4A, MTS1, multipl 99.9 1.5E-23 5.1E-28 203.3 11.6 146 515-667 5-151 (156)
89 1ycs_B 53BP2, P53BP2; ankyrin 99.9 6.2E-24 2.1E-28 221.8 9.2 174 455-668 4-189 (239)
90 1d9s_A Cyclin-dependent kinase 99.9 3.4E-23 1.2E-27 195.6 12.4 132 514-652 4-136 (136)
91 3t8k_A Uncharacterized protein 99.9 1.3E-23 4.3E-28 209.4 7.2 158 458-655 8-182 (186)
92 3aaa_C Myotrophin, protein V-1 99.9 2.2E-22 7.6E-27 186.3 10.4 116 804-921 4-119 (123)
93 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.7E-21 5.7E-26 180.9 16.3 126 521-652 1-126 (126)
94 2jab_A H10-2-G3; HER2, darpin, 99.9 1.3E-21 4.5E-26 184.7 15.1 127 518-650 10-136 (136)
95 3ehr_A Osteoclast-stimulating 99.9 3E-22 1E-26 206.5 8.2 134 800-934 66-199 (222)
96 3deo_A Signal recognition part 99.8 2.2E-21 7.6E-26 193.4 9.9 125 803-930 40-181 (183)
97 3ui2_A Signal recognition part 99.8 8.6E-21 2.9E-25 198.4 11.3 124 804-930 42-182 (244)
98 2b0o_E UPLC1; arfgap, structur 99.8 1E-20 3.5E-25 203.8 11.2 140 739-921 151-299 (301)
99 1dcq_A PYK2-associated protein 99.8 6.8E-20 2.3E-24 195.1 17.4 124 809-933 132-263 (278)
100 3c5r_A BARD-1, BRCA1-associate 99.8 5.1E-20 1.7E-24 173.9 13.9 128 545-679 1-128 (137)
101 1n0q_A 3ANK, 3 ankyrin repeats 99.8 6.5E-20 2.2E-24 160.2 12.2 91 841-932 2-92 (93)
102 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.1E-19 3.9E-24 158.7 12.5 93 806-900 1-93 (93)
103 2b0o_E UPLC1; arfgap, structur 99.8 2.9E-19 1E-23 192.5 18.0 141 520-672 149-298 (301)
104 3aaa_C Myotrophin, protein V-1 99.8 6.8E-20 2.3E-24 169.5 10.6 111 519-635 4-114 (123)
105 3ehr_A Osteoclast-stimulating 99.8 3.4E-20 1.2E-24 191.1 9.2 137 518-660 69-206 (222)
106 3jue_A Arfgap with coiled-coil 99.8 1.2E-19 4E-24 199.9 13.9 128 804-932 196-325 (368)
107 3lvq_E ARF-GAP with SH3 domain 99.8 1.5E-19 5.2E-24 209.6 15.4 126 808-935 133-267 (497)
108 3deo_A Signal recognition part 99.8 2.4E-19 8.1E-24 178.6 13.8 139 454-649 42-181 (183)
109 1dcq_A PYK2-associated protein 99.8 1E-18 3.5E-23 186.0 19.1 98 801-900 163-263 (278)
110 3ui2_A Signal recognition part 99.8 3E-19 1E-23 186.6 14.2 142 454-652 43-185 (244)
111 2l6b_A NR1C; ankyrin, consensu 99.8 1.1E-19 3.6E-24 166.0 8.6 109 802-912 4-112 (115)
112 3lvq_E ARF-GAP with SH3 domain 99.8 1E-18 3.6E-23 202.5 15.0 140 741-917 134-276 (497)
113 3jue_A Arfgap with coiled-coil 99.7 3.8E-18 1.3E-22 187.8 13.5 145 518-668 195-345 (368)
114 2l6b_A NR1C; ankyrin, consensu 99.7 1.5E-17 5.2E-22 151.5 9.4 107 518-630 5-111 (115)
115 2zgd_A 3 repeat synthetic anky 99.7 6.3E-17 2.1E-21 146.1 10.2 92 801-894 18-109 (110)
116 2zgd_A 3 repeat synthetic anky 99.7 1.6E-16 5.4E-21 143.4 10.3 88 839-927 22-109 (110)
117 1w7d_A Fasciclin-like protein; 44.1 20 0.00068 32.1 4.2 98 39-150 17-135 (137)
118 3mkq_B Coatomer subunit alpha; 40.2 1.1E+02 0.0038 28.5 8.7 134 454-649 6-140 (177)
119 2vxp_A Transforming growth fac 39.6 36 0.0012 30.1 5.2 97 39-148 16-131 (132)
120 1nyo_A Immunogenic protein MPT 24.1 23 0.0008 32.8 1.1 100 39-150 42-161 (163)
121 4g26_A Pentatricopeptide repea 23.9 93 0.0032 34.7 6.3 100 821-928 91-198 (501)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.1e-53 Score=489.04 Aligned_cols=389 Identities=29% Similarity=0.385 Sum_probs=344.3
Q ss_pred ccCCChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHH
Q psy8454 452 KKISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAAL 531 (936)
Q Consensus 452 ~~~~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~ 531 (936)
.+..+.|+|+.|+..|++++|++|++.+.+.+. ++..|.||||+|+.
T Consensus 10 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~---------------------------------~~~~~~t~L~~A~~ 56 (437)
T 1n11_A 10 GGESGLTPLHVASFMGHLPIVKNLLQRGASPNV---------------------------------SNVKVETPLHMAAR 56 (437)
T ss_dssp -----CCHHHHHHHHTCHHHHHHHHHTTCCSCC---------------------------------SSSCCCCHHHHHHH
T ss_pred cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC---------------------------------CCCCCCCHHHHHHH
Confidence 456788999999999999999999999865432 56789999999999
Q ss_pred cCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcc
Q psy8454 532 YGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFN 611 (936)
Q Consensus 532 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~ 611 (936)
.|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.+
T Consensus 57 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~ 136 (437)
T 1n11_A 57 AGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 136 (437)
T ss_dssp HTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred cCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred cccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccC
Q psy8454 612 EQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLV 691 (936)
Q Consensus 612 ~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~ 691 (936)
.+.+..+..|.||||+|++.|+.+++++|+++|++++..+..|.|||++|+..+..++++.++..+....
T Consensus 137 ------~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---- 206 (437)
T 1n11_A 137 ------ASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH---- 206 (437)
T ss_dssp ------CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSC----
T ss_pred ------CCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC----
Confidence 4567788899999999999999999999999999999999999999999999999999988874332210
Q ss_pred CCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCC-C
Q psy8454 692 PKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPD-N 770 (936)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~-~ 770 (936)
.....+.++|+.|+..|+.+++++|++.+.+.+... .
T Consensus 207 ------------------------------------------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~ 244 (437)
T 1n11_A 207 ------------------------------------------SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQ 244 (437)
T ss_dssp ------------------------------------------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred ------------------------------------------CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC
Confidence 111234568999999999999999999988776543 4
Q ss_pred CCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHh
Q psy8454 771 ACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQ 850 (936)
Q Consensus 771 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~ 850 (936)
..+|++.+...... .+.+++++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+.
T Consensus 245 g~t~L~~A~~~g~~---~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~-~~g~t~L~~A~~ 320 (437)
T 1n11_A 245 GVTPLHLAAQEGHA---EMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATT-RMGYTPLHVASH 320 (437)
T ss_dssp CCCHHHHHHHTTCH---HHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCC-SSCCCHHHHHHH
T ss_pred CCCHHHHHHHCCCH---HHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCC-CCCCCHHHHHHH
Confidence 56677766544332 23456788999999999999999999999999999999999999999998 899999999999
Q ss_pred CCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhh
Q psy8454 851 NNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHE 930 (936)
Q Consensus 851 ~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~ 930 (936)
.|+.++|++|+++| +++|.+|..|+||||+|+++|+.++|++|+++||+++.+|..|+||+++|++.|+.+++++|...
T Consensus 321 ~g~~~~v~~Ll~~g-ad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~ 399 (437)
T 1n11_A 321 YGNIKLVKFLLQHQ-ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVV 399 (437)
T ss_dssp SSCSHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred cCcHHHHHHHHhcC-CCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHhc
Confidence 99999999999998 99999999999999999999999999999999999999999999999999999999999999643
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=7.3e-51 Score=467.83 Aligned_cols=365 Identities=28% Similarity=0.375 Sum_probs=324.8
Q ss_pred CcccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHH
Q psy8454 514 TTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALH 593 (936)
Q Consensus 514 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~ 593 (936)
.++..+..|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||
T Consensus 6 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 85 (437)
T 1n11_A 6 SGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLH 85 (437)
T ss_dssp ---------CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHH
T ss_pred CccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHH
Confidence 45668889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHH
Q psy8454 594 LATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVA 673 (936)
Q Consensus 594 ~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~ 673 (936)
+|+..|+.++|++|++++ ++++..+..|.||||+|++.|+.+++++|++.|++.+..+..|.|||++|+..+..
T Consensus 86 ~A~~~g~~~~v~~Ll~~g------a~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~ 159 (437)
T 1n11_A 86 CAARIGHTNMVKLLLENN------ANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKV 159 (437)
T ss_dssp HHHHHTCHHHHHHHHHHT------CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHCCCHHHHHHHHhCC------CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCH
Confidence 999999999999999976 57788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHH
Q psy8454 674 KLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIK 753 (936)
Q Consensus 674 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~ 753 (936)
++++.++..+.... ..+..+.++|+.|+..|+.+
T Consensus 160 ~~v~~Ll~~g~~~~----------------------------------------------~~~~~g~t~L~~A~~~~~~~ 193 (437)
T 1n11_A 160 RVAELLLERDAHPN----------------------------------------------AAGKNGLTPLHVAVHHNNLD 193 (437)
T ss_dssp HHHHHHHHTTCCTT----------------------------------------------CCCSSCCCHHHHHHHTTCHH
T ss_pred HHHHHHHhCCCCCC----------------------------------------------CCCCCCCCHHHHHHHcCCHH
Confidence 99988874432210 11123456899999999999
Q ss_pred HHHHHhcCCcCCCCCC-CCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q psy8454 754 LIKSYFGLSNEEKVPD-NACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRAD 832 (936)
Q Consensus 754 ~vk~Ll~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~ 832 (936)
++++|++.+.+..... ...+|++.+...... ...+.+++.|.+++..+..|.||||+|+..|+.+++++|+++|++
T Consensus 194 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~---~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~ 270 (437)
T 1n11_A 194 IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQV---EVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN 270 (437)
T ss_dssp HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCH---HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC
T ss_pred HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCH---HHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCC
Confidence 9999999988875543 456677766554332 334577889999999999999999999999999999999999999
Q ss_pred cccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHH
Q psy8454 833 INIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCL 912 (936)
Q Consensus 833 v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L 912 (936)
++..+ ..|.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+.+|+.++|++|+++|++++.+|..|.|||
T Consensus 271 ~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L 348 (437)
T 1n11_A 271 GNLGN-KSGLTPLHLVAQEGHVPVADVLIKHG-VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPL 348 (437)
T ss_dssp TTCCC-TTCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred CCCCC-CCCCCHHHHHHHcCCHHHHHHHHhCC-ccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 99998 89999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHhhhCCCcC
Q psy8454 913 HMAQQMTSLSLVRVLTHEAPFVL 935 (936)
Q Consensus 913 ~~A~~~g~~~iv~~Ll~~~~~~~ 935 (936)
|+|+..|+.++|++|+++|+.+.
T Consensus 349 ~~A~~~g~~~iv~~Ll~~ga~~~ 371 (437)
T 1n11_A 349 HQAAQQGHTDIVTLLLKNGASPN 371 (437)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCSC
T ss_pred HHHHHCChHHHHHHHHHCcCCCC
Confidence 99999999999999999998753
No 3
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.5e-43 Score=391.92 Aligned_cols=301 Identities=26% Similarity=0.326 Sum_probs=267.4
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCC-CCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHc
Q psy8454 520 DRGFTVLHVAALYGRIKVVDLVLELGADTNSQDL-CGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNN 598 (936)
Q Consensus 520 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~ 598 (936)
..|.|+||.|++.|++++|++|+++|+++|.++. .|+||||+|+..|+.++|++|+++|++++.++..+.++++.++..
T Consensus 23 ~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~ 102 (337)
T 4g8k_A 23 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIA 102 (337)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred CCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhc
Confidence 3478999999999999999999999999998875 599999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHH
Q psy8454 599 GHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNA 678 (936)
Q Consensus 599 g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~ 678 (936)
+...++..++..+ .+++..+..|.|||++|+..|+.+++++|+++|++++..+.....+.
T Consensus 103 ~~~~~~~~~~~~~------~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~-------------- 162 (337)
T 4g8k_A 103 GSVKLLKLFLSKG------ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQE-------------- 162 (337)
T ss_dssp TCHHHHHHHHTTT------CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC------------------
T ss_pred ccchhhHHhhhcc------chhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccc--------------
Confidence 9999999999855 67899999999999999999999999999999999876543221110
Q ss_pred hhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHH
Q psy8454 679 YVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSY 758 (936)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~L 758 (936)
.....+.+||+.|+..|+.+++++|
T Consensus 163 -------------------------------------------------------~~~~~g~T~L~~A~~~g~~~~v~~L 187 (337)
T 4g8k_A 163 -------------------------------------------------------RLRKGGATALMDAAEKGHVEVLKIL 187 (337)
T ss_dssp --------------------------------------------------------CTTCSCCHHHHHHHHTCHHHHHHH
T ss_pred -------------------------------------------------------cccCCCCcHHHHHHHCCCHHHHHHH
Confidence 0111234578888999999999998
Q ss_pred hcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCC----HHHHHHHHhCCCCcc
Q psy8454 759 FGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGH----YDLVRLLINYRADIN 834 (936)
Q Consensus 759 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~----~~~v~~LL~~g~~v~ 834 (936)
++ ..|+++|..+..|.|+++.++..+. ..++++|+++|++++
T Consensus 188 L~----------------------------------~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n 233 (337)
T 4g8k_A 188 LD----------------------------------EMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN 233 (337)
T ss_dssp HH----------------------------------HSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTT
T ss_pred Hh----------------------------------ccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCC
Confidence 84 2467789999999999998877654 468899999999999
Q ss_pred cccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHH
Q psy8454 835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHM 914 (936)
Q Consensus 835 ~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~ 914 (936)
.++ ..|.||||+|+..|+.+++++|++.+++++|.+|..|+||||+|++.|+.++|++|+++||++|.+ |||++
T Consensus 234 ~~d-~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~-----~~L~~ 307 (337)
T 4g8k_A 234 VRG-ERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG-----DLVMT 307 (337)
T ss_dssp CCC-GGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC-----CHHHH
T ss_pred CcC-CCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-----CHHHH
Confidence 998 899999999999999999999999877999999999999999999999999999999999998764 59999
Q ss_pred HHHcCCHHHHHHHhhhCCCcC
Q psy8454 915 AQQMTSLSLVRVLTHEAPFVL 935 (936)
Q Consensus 915 A~~~g~~~iv~~Ll~~~~~~~ 935 (936)
|+++|+.++|++|+++|+.+.
T Consensus 308 A~~~~~~~iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 308 ARRNYDHSLVKVLLSHGAKED 328 (337)
T ss_dssp HHHTTCHHHHHHHHHTTCCC-
T ss_pred HHHcCCHHHHHHHHHCcCCCC
Confidence 999999999999999998763
No 4
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=2.9e-42 Score=383.65 Aligned_cols=311 Identities=27% Similarity=0.330 Sum_probs=281.7
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHH
Q psy8454 518 MDDRGFTVLHVAALYGRIKVVDLVLEL-GADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLAT 596 (936)
Q Consensus 518 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~ 596 (936)
.+..|.|+||.|++.|+.+.++.|+.. +++++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+
T Consensus 20 ~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 99 (351)
T 3utm_A 20 TGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNAC 99 (351)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred eccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHH
Confidence 344578999999999999999888875 9999999999999999999999999999999999999999999999999999
Q ss_pred HcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHH
Q psy8454 597 NNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLL 676 (936)
Q Consensus 597 ~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll 676 (936)
..|+.+++++|++++ ++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.+|++++...+..+.+
T Consensus 100 ~~g~~~iv~~Ll~~g------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~ 173 (351)
T 3utm_A 100 SYGHYEVTELLLKHG------ACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERL 173 (351)
T ss_dssp HTTCHHHHHHHHHTT------CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHH
T ss_pred HCCCHHHHHHHHHCC------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHH
Confidence 999999999999865 57888999999999999999999999999999999999999999999999877766665
Q ss_pred HHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHH
Q psy8454 677 NAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIK 756 (936)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk 756 (936)
.... ...++..++..++.+.++
T Consensus 174 ~~~~----------------------------------------------------------~~~~~~~~~~~~~~~~~~ 195 (351)
T 3utm_A 174 TYEF----------------------------------------------------------KGHSLLQAAREADLAKVK 195 (351)
T ss_dssp HHHH----------------------------------------------------------HHHHHHHHHHTTCHHHHH
T ss_pred Hhhh----------------------------------------------------------cccHHHHHHHhccHHHHH
Confidence 4433 335678889999999999
Q ss_pred HHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHc---CCHHHHHHHHhCCCCc
Q psy8454 757 SYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSL---GHYDLVRLLINYRADI 833 (936)
Q Consensus 757 ~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~---g~~~~v~~LL~~g~~v 833 (936)
.++..... ....+..|.||||+|+.. +..+++++|+++|+++
T Consensus 196 ~~l~~~~~-----------------------------------~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~ 240 (351)
T 3utm_A 196 KTLALEII-----------------------------------NFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV 240 (351)
T ss_dssp HHTTTCCT-----------------------------------TCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCT
T ss_pred HHHHhhcc-----------------------------------cccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCc
Confidence 88864321 123467899999999999 5689999999999999
Q ss_pred ccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHH
Q psy8454 834 NIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLH 913 (936)
Q Consensus 834 ~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~ 913 (936)
+..+ ..|.||||+|+..|+.+++++|+++| +++|.+|..|+||||+|++.|+.++|++|+++|++++.+|..|+||++
T Consensus 241 ~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~ 318 (351)
T 3utm_A 241 NEKN-KDFMTPLHVAAERAHNDVMEVLHKHG-AKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQ 318 (351)
T ss_dssp TCCC-TTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred CCcC-CCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhh
Confidence 9998 89999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHhhhCCC
Q psy8454 914 MAQQMTSLSLVRVLTHEAPF 933 (936)
Q Consensus 914 ~A~~~g~~~iv~~Ll~~~~~ 933 (936)
+| +.+++++|.++++.
T Consensus 319 ~a----~~~~~~~l~~~~~~ 334 (351)
T 3utm_A 319 MG----NEAVQQILSESTPM 334 (351)
T ss_dssp HS----CHHHHHHHHHC---
T ss_pred hh----hHHHHHHHHhcccc
Confidence 98 77999999888764
No 5
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=4.3e-42 Score=380.19 Aligned_cols=301 Identities=25% Similarity=0.281 Sum_probs=258.7
Q ss_pred CChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcCC
Q psy8454 455 SSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGR 534 (936)
Q Consensus 455 ~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~ 534 (936)
.+.++|+.|+++|++++|+.||+.|++.+.. .+..|.||||+|+..|+
T Consensus 24 ~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~--------------------------------~~~~g~TpLh~A~~~g~ 71 (337)
T 4g8k_A 24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQ--------------------------------EEEGGWTPLHNAVQMSR 71 (337)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTCCTTCC--------------------------------CTTTCCCHHHHHHHTTC
T ss_pred CCChHHHHHHHcCCHHHHHHHHHCCCCCCcc--------------------------------CCCCCcCHHHHHHHcCC
Confidence 4578999999999999999999999875432 23458999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhccccc
Q psy8454 535 IKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQE 614 (936)
Q Consensus 535 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~ 614 (936)
.++|++|+++|++++.++..+.++++.++..+...++..+++.+++++..|..|.||+|+|+..|+.+++++|+++|+..
T Consensus 72 ~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~ 151 (337)
T 4g8k_A 72 EDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV 151 (337)
T ss_dssp HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987542
Q ss_pred cc----ccCcccccCCCChHHHHHHHhCCHHHHHHHHH-CCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccc
Q psy8454 615 VL----NLNINAVNNQGDSPLHAAARWGYTSIIQLLLD-HGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNY 689 (936)
Q Consensus 615 ~~----~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~-~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~ 689 (936)
.. ....+..+..|.||||+|++.|+.+++++|++ .|++++..+..|.|+++.++...
T Consensus 152 ~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~------------------ 213 (337)
T 4g8k_A 152 NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSS------------------ 213 (337)
T ss_dssp TCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHS------------------
T ss_pred chhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHc------------------
Confidence 21 12234566789999999999999999999995 69999999999999998763200
Q ss_pred cCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCC
Q psy8454 690 LVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPD 769 (936)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~ 769 (936)
...+...++++|+
T Consensus 214 ---------------------------------------------------------~~~~~~~i~~lLl---------- 226 (337)
T 4g8k_A 214 ---------------------------------------------------------DDSDVEAITHLLL---------- 226 (337)
T ss_dssp ---------------------------------------------------------CTTTHHHHHHHHH----------
T ss_pred ---------------------------------------------------------CcccHHHHHHHHH----------
Confidence 0011123444444
Q ss_pred CCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCcccccccCCCcHHHHH
Q psy8454 770 NACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINY-RADINIVTRVKQLTPLHIA 848 (936)
Q Consensus 770 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~-g~~v~~~~~~~g~TpLh~A 848 (936)
+.|+++|.++..|.||||+|+..|+.+++++|++. |++++.++ ..|.||||+|
T Consensus 227 -------------------------~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d-~~G~TpL~~A 280 (337)
T 4g8k_A 227 -------------------------DHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTD-SDGKTALLLA 280 (337)
T ss_dssp -------------------------HTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBC-TTSCBHHHHH
T ss_pred -------------------------HCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcC-CCCCCHHHHH
Confidence 56778899999999999999999999999999975 89999999 8999999999
Q ss_pred HhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCc
Q psy8454 849 CQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIK 904 (936)
Q Consensus 849 ~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~ 904 (936)
++.|+.++|++|+++| +|+|.+ ||||+|+++|+.++|++|+++||++|..
T Consensus 281 ~~~g~~~iv~~Ll~~G-Ad~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA~~d~~ 330 (337)
T 4g8k_A 281 VELKLKKIAELLCKRG-ASTDCG-----DLVMTARRNYDHSLVKVLLSHGAKEDFH 330 (337)
T ss_dssp HHTTCHHHHHHHHTTS-CSSTTC-----CHHHHHHHTTCHHHHHHHHHTTCCC---
T ss_pred HHcCCHHHHHHHHHCC-CCCCCC-----CHHHHHHHcCCHHHHHHHHHCcCCCCCC
Confidence 9999999999999999 888764 5999999999999999999999999864
No 6
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.4e-41 Score=363.09 Aligned_cols=270 Identities=26% Similarity=0.328 Sum_probs=245.4
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCCCCC-CCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcC
Q psy8454 521 RGFTVLHVAALYGRIKVVDLVLELGADTNSQ-DLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNG 599 (936)
Q Consensus 521 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g 599 (936)
+|.|+||.|++.|+.+++++|++.|++++.. +..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 83 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG 83 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC
Confidence 4789999999999999999999999999988 788999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHh
Q psy8454 600 HETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAY 679 (936)
Q Consensus 600 ~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~ 679 (936)
+.+++++|++++ .+++..+..|.||||+|++.|+.+++++|+++|++++..+....
T Consensus 84 ~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~------------------ 139 (285)
T 1wdy_A 84 SVKLLKLFLSKG------ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE------------------ 139 (285)
T ss_dssp CHHHHHHHHHTT------CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCH------------------
T ss_pred CHHHHHHHHHcC------CCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHH------------------
Confidence 999999999865 57888999999999999999999999999999998775432100
Q ss_pred hcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHh
Q psy8454 680 VHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYF 759 (936)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll 759 (936)
T Consensus 140 -------------------------------------------------------------------------------- 139 (285)
T 1wdy_A 140 -------------------------------------------------------------------------------- 139 (285)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCcccccc
Q psy8454 760 GLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINY-RADINIVTR 838 (936)
Q Consensus 760 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~-g~~v~~~~~ 838 (936)
+.+..+..|.||||.|+..|+.+++++|+++ |++++..+
T Consensus 140 ---------------------------------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~- 179 (285)
T 1wdy_A 140 ---------------------------------------DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD- 179 (285)
T ss_dssp ---------------------------------------HHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCC-
T ss_pred ---------------------------------------HHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccC-
Confidence 0123367788999999999999999999987 99999888
Q ss_pred cCCCcHHHHHHhCCC----HHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCcCcccCCCcHHH
Q psy8454 839 VKQLTPLHIACQNNN----LSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK-SGARPQIKNHYGQTCLH 913 (936)
Q Consensus 839 ~~g~TpLh~A~~~g~----~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~-~Ga~~~~~d~~g~T~L~ 913 (936)
..|.||||+|+..|+ .+++++|++.| ++++.+|..|.||||+|++.|+.++|++|++ +|++++.+|..|+||||
T Consensus 180 ~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~ 258 (285)
T 1wdy_A 180 NMGRNALIHALLSSDDSDVEAITHLLLDHG-ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALL 258 (285)
T ss_dssp TTSCCHHHHHHHCSCTTTHHHHHHHHHHTT-CCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHH
T ss_pred CCCCCHHHHHHHccccchHHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHH
Confidence 889999999999999 89999999998 9999999999999999999999999999998 89999999999999999
Q ss_pred HHHHcCCHHHHHHHhhhCCCcC
Q psy8454 914 MAQQMTSLSLVRVLTHEAPFVL 935 (936)
Q Consensus 914 ~A~~~g~~~iv~~Ll~~~~~~~ 935 (936)
+|++.|+.+++++|+++|+.+.
T Consensus 259 ~A~~~~~~~i~~~Ll~~Ga~~~ 280 (285)
T 1wdy_A 259 LAVELKLKKIAELLCKRGASTD 280 (285)
T ss_dssp HHHHTTCHHHHHHHHHHSSCSC
T ss_pred HHHHcCcHHHHHHHHHcCCCCC
Confidence 9999999999999999998763
No 7
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.6e-40 Score=355.09 Aligned_cols=266 Identities=30% Similarity=0.379 Sum_probs=242.7
Q ss_pred CChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcCC
Q psy8454 455 SSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGR 534 (936)
Q Consensus 455 ~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~ 534 (936)
.+.++|+.|++.|+.++|++|++.+.+.... .+..|.||||+|+..|+
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~--------------------------------~~~~g~t~L~~A~~~g~ 51 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQ--------------------------------EEEGGWTPLHNAVQMSR 51 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCC--------------------------------CTTTCCCHHHHHHHTTC
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCcccc--------------------------------cCCCCCcHHHHHHHcCC
Confidence 4568999999999999999999998764332 36679999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhccccc
Q psy8454 535 IKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQE 614 (936)
Q Consensus 535 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~ 614 (936)
.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++++.
T Consensus 52 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-- 129 (285)
T 1wdy_A 52 EDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGA-- 129 (285)
T ss_dssp HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTC--
T ss_pred HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999763
Q ss_pred ccccCcccc----------cCCCChHHHHHHHhCCHHHHHHHHHC-CCCCCCcccCCCChhhhhhchhHHHHHHHhhcCC
Q psy8454 615 VLNLNINAV----------NNQGDSPLHAAARWGYTSIIQLLLDH-GANPTLENKRKVTPLQNANNLHVAKLLNAYVHKP 683 (936)
Q Consensus 615 ~~~~~~~~~----------~~~g~t~L~~A~~~g~~~iv~~Ll~~-ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~ 683 (936)
+++.. +..|.||||.|++.|+.+++++|++. |++++
T Consensus 130 ----~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~----------------------------- 176 (285)
T 1wdy_A 130 ----NVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN----------------------------- 176 (285)
T ss_dssp ----CTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTT-----------------------------
T ss_pred ----CcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCC-----------------------------
Confidence 44444 77899999999999999999999986 66543
Q ss_pred CccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCc
Q psy8454 684 KPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSN 763 (936)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~ 763 (936)
T Consensus 177 -------------------------------------------------------------------------------- 176 (285)
T 1wdy_A 177 -------------------------------------------------------------------------------- 176 (285)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCC----HHHHHHHHhCCCCccccccc
Q psy8454 764 EEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGH----YDLVRLLINYRADINIVTRV 839 (936)
Q Consensus 764 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~----~~~v~~LL~~g~~v~~~~~~ 839 (936)
..+..|.||||.|+..|+ .+++++|+++|++++..+ .
T Consensus 177 --------------------------------------~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~-~ 217 (285)
T 1wdy_A 177 --------------------------------------ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRG-E 217 (285)
T ss_dssp --------------------------------------CCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCC-T
T ss_pred --------------------------------------ccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcC-C
Confidence 446678888899998888 999999999999999998 8
Q ss_pred CCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCccc
Q psy8454 840 KQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNH 906 (936)
Q Consensus 840 ~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~ 906 (936)
.|.||||+|+..|+.+++++|++..+++++.+|..|+||||+|++.|+.+++++|+++||+++.+|.
T Consensus 218 ~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d~ 284 (285)
T 1wdy_A 218 RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284 (285)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccc
Confidence 9999999999999999999999954499999999999999999999999999999999999998873
No 8
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=5.8e-41 Score=375.92 Aligned_cols=134 Identities=26% Similarity=0.344 Sum_probs=124.8
Q ss_pred cccCCCCCCcHHHHHHHcC---CHHHHHHHHhCCCCcccc-------cccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCC
Q psy8454 800 INICNSDGYTALHIATSLG---HYDLVRLLINYRADINIV-------TRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVN 869 (936)
Q Consensus 800 ~n~~d~~g~t~L~~Aa~~g---~~~~v~~LL~~g~~v~~~-------~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn 869 (936)
++..+..|.||||+|+..| +.+++++|+++|++++.. .+..|.||||+|+..|+.++|++|++.+++++|
T Consensus 228 ~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n 307 (373)
T 2fo1_E 228 IEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD 307 (373)
T ss_dssp TSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTT
T ss_pred hhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCcc
Confidence 5667889999999999998 899999999999999862 126899999999999999999999999889999
Q ss_pred CCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCCC
Q psy8454 870 AQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPF 933 (936)
Q Consensus 870 ~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~ 933 (936)
.+|..|+||||+|+..|+.++|++|+++|++++.+|..|+|||++|+.+|+.++|++|+++++.
T Consensus 308 ~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 308 KQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371 (373)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999875
No 9
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=8.4e-39 Score=355.70 Aligned_cols=327 Identities=25% Similarity=0.269 Sum_probs=257.4
Q ss_pred CCChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcC
Q psy8454 454 ISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYG 533 (936)
Q Consensus 454 ~~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g 533 (936)
..+.++|+.|++.|+.+.|+.++..... .++.++..|.||||+|+..|
T Consensus 22 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~--------------------------------~~~~~d~~g~t~L~~A~~~g 69 (351)
T 3utm_A 22 EYKKDELLEAARSGNEEKLMALLTPLNV--------------------------------NCHASDGRKSTPLHLAAGYN 69 (351)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHCCTTTT--------------------------------TCCCSSTTCCCHHHHHHHTT
T ss_pred cccchhHHHHHHcCCHHHHHHHHHhcCC--------------------------------CcccCCCCCCCHHHHHHHcC
Confidence 3456799999999999999999976322 23347888999999999999
Q ss_pred CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccc
Q psy8454 534 RIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQ 613 (936)
Q Consensus 534 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~ 613 (936)
+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++++
T Consensus 70 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-- 147 (351)
T 3utm_A 70 RVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHG-- 147 (351)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT--
T ss_pred CHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred cccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccCCC
Q psy8454 614 EVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPK 693 (936)
Q Consensus 614 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~ 693 (936)
++++..+..|.||++.|+..+..+.+.+.... .++..++..+....+..++.....
T Consensus 148 ----~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~~~~~-------- 203 (351)
T 3utm_A 148 ----ADPTLVNCHGKSAVDMAPTPELRERLTYEFKG------------HSLLQAAREADLAKVKKTLALEII-------- 203 (351)
T ss_dssp ----CCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHH------------HHHHHHHHTTCHHHHHHHTTTCCT--------
T ss_pred ----CCCccccCCCCcchHHHhhhhhHHHHHhhhcc------------cHHHHHHHhccHHHHHHHHHhhcc--------
Confidence 57788899999999998877777776665542 234444444444444444311100
Q ss_pred CCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHc---CcHHHHHHHhcCCcCCCCCCC
Q psy8454 694 EKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIEN---NEIKLIKSYFGLSNEEKVPDN 770 (936)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~---g~~~~vk~Ll~~~~~~~~~~~ 770 (936)
.......+.++++.|+.. +..+++++|++
T Consensus 204 --------------------------------------~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~---------- 235 (351)
T 3utm_A 204 --------------------------------------NFKQPQSHETALHCAVASLHPKRKQVAELLLR---------- 235 (351)
T ss_dssp --------------------------------------TCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHH----------
T ss_pred --------------------------------------cccCCCCCCCHHHHHHHHhCccHHHHHHHHHH----------
Confidence 000112233577788877 55788887775
Q ss_pred CCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHh
Q psy8454 771 ACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQ 850 (936)
Q Consensus 771 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~ 850 (936)
.|+++|.++..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+.
T Consensus 236 -------------------------~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d-~~g~t~L~~A~~ 289 (351)
T 3utm_A 236 -------------------------KGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALD-SLGQTALHRAAL 289 (351)
T ss_dssp -------------------------TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHH
T ss_pred -------------------------cCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC-CCCCCHHHHHHH
Confidence 456678899999999999999999999999999999999999 899999999999
Q ss_pred CCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCC
Q psy8454 851 NNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTS 920 (936)
Q Consensus 851 ~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~ 920 (936)
.|+.++|++|+++| ++++.+|..|+||+++| +.+++++|.+.+.. ....+.+++..|++.|.
T Consensus 290 ~~~~~~v~~Ll~~g-ad~~~~~~~g~tal~~a----~~~~~~~l~~~~~~---~~~~~~~~l~~A~~~gd 351 (351)
T 3utm_A 290 AGHLQTCRLLLSYG-SDPSIISLQGFTAAQMG----NEAVQQILSESTPM---RTSDVDYRLLEASKAGD 351 (351)
T ss_dssp HTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHS----CHHHHHHHHHC-----------------------
T ss_pred cCcHHHHHHHHHcC-CCCCCcCCCCCChhhhh----hHHHHHHHHhcccc---ccCcceeehhhhhccCC
Confidence 99999999999999 99999999999999998 67899999987653 34567899999998874
No 10
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.1e-39 Score=349.13 Aligned_cols=258 Identities=28% Similarity=0.364 Sum_probs=209.9
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhcC-----------CCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCC
Q psy8454 519 DDRGFTVLHVAALYGRIKVVDLVLELG-----------ADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNE 587 (936)
Q Consensus 519 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g-----------~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~ 587 (936)
...|.|+||+|+..|+.+.+..++..+ ...+..|..|+||||+|+..|+.+++++|++.|++++.+|..
T Consensus 12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~ 91 (285)
T 3d9h_A 12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITAD 91 (285)
T ss_dssp ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTT
T ss_pred chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC
Confidence 456899999999999977766655432 235678889999999999999999999999999999999999
Q ss_pred CCcHHHHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhh
Q psy8454 588 GNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667 (936)
Q Consensus 588 g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a 667 (936)
|.||||+|+..|+.+++++|++++ ++++..+..|.||||+|+..|+.+++++|+++|++++.
T Consensus 92 g~t~L~~A~~~g~~~~v~~Ll~~g------a~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------------ 153 (285)
T 3d9h_A 92 HVSPLHEACLGGHLSCVKILLKHG------AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP------------ 153 (285)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTT------CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC------------
T ss_pred CCCHHHHHHHCCcHHHHHHHHHCC------CCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCC------------
Confidence 999999999999999999999865 67889999999999999999999999999999876542
Q ss_pred hchhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHH
Q psy8454 668 NNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALI 747 (936)
Q Consensus 668 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai 747 (936)
T Consensus 154 -------------------------------------------------------------------------------- 153 (285)
T 3d9h_A 154 -------------------------------------------------------------------------------- 153 (285)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy8454 748 ENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLI 827 (936)
Q Consensus 748 ~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL 827 (936)
+..|.||||+|+..|+.+++++|+
T Consensus 154 --------------------------------------------------------~~~g~t~L~~A~~~g~~~~v~~Ll 177 (285)
T 3d9h_A 154 --------------------------------------------------------ESDLASPIHEAARRGHVECVNSLI 177 (285)
T ss_dssp --------------------------------------------------------SCTTSCHHHHHHHHTCHHHHHHHH
T ss_pred --------------------------------------------------------CCCCCCHHHHHHHcCCHHHHHHHH
Confidence 224789999999999999999999
Q ss_pred hCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccC
Q psy8454 828 NYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHY 907 (936)
Q Consensus 828 ~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~ 907 (936)
++|++++..+ ..|.||||+|+..|+.+++++|++.| ++++. |..|.||||+|++.|+.++|++|+++|++++.+|..
T Consensus 178 ~~g~~~~~~d-~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~ 254 (285)
T 3d9h_A 178 AYGGNIDHKI-SHLGTPLYLACENQQRACVKKLLESG-ADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAE 254 (285)
T ss_dssp HTTCCTTCCB-TTTBCHHHHHHHTTCHHHHHHHHHTT-CCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred HCCCCCCCcC-CCCCCHHHHHHHcCcHHHHHHHHHCC-CCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC
Confidence 9999999998 89999999999999999999999998 99995 889999999999999999999999999999999999
Q ss_pred CCcHHHHHHHcCCHHHHHHHhhh-CCCcC
Q psy8454 908 GQTCLHMAQQMTSLSLVRVLTHE-APFVL 935 (936)
Q Consensus 908 g~T~L~~A~~~g~~~iv~~Ll~~-~~~~~ 935 (936)
|+||||+|+ ++.+++++|+++ ++.+.
T Consensus 255 g~t~l~~A~--~~~~~~~~Ll~~~~a~l~ 281 (285)
T 3d9h_A 255 GKRPVELVP--PESPLAQLFLEREGASLP 281 (285)
T ss_dssp SCCGGGGSC--TTSHHHHHHHHHC-----
T ss_pred CCCHHHHhc--CccHHHHHHHHhhccCCC
Confidence 999999999 457999999988 65543
No 11
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=1.9e-38 Score=337.15 Aligned_cols=249 Identities=24% Similarity=0.297 Sum_probs=224.2
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCc
Q psy8454 521 RGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGH 600 (936)
Q Consensus 521 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~ 600 (936)
+|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGS 81 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhh
Q psy8454 601 ETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYV 680 (936)
Q Consensus 601 ~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~ 680 (936)
.+++++|+++++ +++. +..|.||||+|++.|+.+++++|+++|++++
T Consensus 82 ~~~v~~Ll~~g~------~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------------------------- 128 (261)
T 2xai_A 82 WDCVNLLLQHGA------SVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNID-------------------------- 128 (261)
T ss_dssp HHHHHHHHHTTC------CSSC-SCTTCCHHHHHHHTTCHHHHHHHHHTTCCTT--------------------------
T ss_pred HHHHHHHHHCCC------CCCC-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC--------------------------
Confidence 999999999764 3443 4569999999999999999999999887644
Q ss_pred cCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhc
Q psy8454 681 HKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFG 760 (936)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~ 760 (936)
T Consensus 129 -------------------------------------------------------------------------------- 128 (261)
T 2xai_A 129 -------------------------------------------------------------------------------- 128 (261)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccC
Q psy8454 761 LSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVK 840 (936)
Q Consensus 761 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~ 840 (936)
..+..|.||||+|+..|+.+++++|+++|++++. + ..
T Consensus 129 -----------------------------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~-~~ 165 (261)
T 2xai_A 129 -----------------------------------------HKISHLGTPLYLACENQQRACVKKLLESGADVNQ-G-KG 165 (261)
T ss_dssp -----------------------------------------CCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTTC-C-BT
T ss_pred -----------------------------------------cCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC-C-CC
Confidence 3366788999999999999999999999999995 4 78
Q ss_pred CCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC--------CcCcccCCCcHH
Q psy8454 841 QLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGAR--------PQIKNHYGQTCL 912 (936)
Q Consensus 841 g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~--------~~~~d~~g~T~L 912 (936)
|.||||+|+..|+.+++++|++.| +|++.+|..|+||||+|+.++ +++++|+++++. ++.+|..|+||+
T Consensus 166 g~t~Lh~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~~~~l~~~~~~~~r~~~g~t~l 242 (261)
T 2xai_A 166 QDSPLHAVARTASEELACLLMDFG-ADTQAKNAEGKRPVELVPPES--PLAQLFLEREGPPSLMQLCRLRIRKCFGIQQH 242 (261)
T ss_dssp TBCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCGGGGSCTTC--THHHHHHHC-CCCCHHHHHHHHHHTTSCTTCG
T ss_pred CCChHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCChhhhccccc--cHHHHHHhccCCccHHHHHHHHHHHHhchhcc
Confidence 999999999999999999999998 999999999999999999665 489999998875 457899999999
Q ss_pred HHHHHcCCHHHHHHHh
Q psy8454 913 HMAQQMTSLSLVRVLT 928 (936)
Q Consensus 913 ~~A~~~g~~~iv~~Ll 928 (936)
|.|.+....+.++-++
T Consensus 243 ~~~~~~~~p~~l~~~l 258 (261)
T 2xai_A 243 HKITKLVLPEDLKQFL 258 (261)
T ss_dssp GGGGGSSSCHHHHHHH
T ss_pred ccCcccCCcHHHHHHH
Confidence 9999988777766654
No 12
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=4.3e-39 Score=360.24 Aligned_cols=267 Identities=22% Similarity=0.242 Sum_probs=232.1
Q ss_pred CcccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHH
Q psy8454 514 TTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALH 593 (936)
Q Consensus 514 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~ 593 (936)
..+..|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++.|++++. ..|.||||
T Consensus 12 ~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~ 89 (364)
T 3ljn_A 12 NRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIH 89 (364)
T ss_dssp ----CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHH
T ss_pred CccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHH
Confidence 3455788899999999999999999999999999999999999999999999999999999999996654 47899999
Q ss_pred HHHHcCcHHHHHHHHhccccc----c-----------cccCcccccCCCChHHHHHHHhC--CHHHHHHHHHCCCCCCCc
Q psy8454 594 LATNNGHETCVKALIYFNEQE----V-----------LNLNINAVNNQGDSPLHAAARWG--YTSIIQLLLDHGANPTLE 656 (936)
Q Consensus 594 ~A~~~g~~eiv~~Ll~~~~~~----~-----------~~~~~~~~~~~g~t~L~~A~~~g--~~~iv~~Ll~~ga~~~~~ 656 (936)
+|+..|+.++|++|++.+... . ....++..+..|.||||+|+..| +.+++++|+++|++++
T Consensus 90 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~-- 167 (364)
T 3ljn_A 90 LAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPT-- 167 (364)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTT--
T ss_pred HHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCc--
Confidence 999999999999999973221 0 11223348889999999999999 9999999999887654
Q ss_pred ccCCCChhhhhhchhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhh
Q psy8454 657 NKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITE 736 (936)
Q Consensus 657 d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (936)
T Consensus 168 -------------------------------------------------------------------------------- 167 (364)
T 3ljn_A 168 -------------------------------------------------------------------------------- 167 (364)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHH
Q psy8454 737 IKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATS 816 (936)
Q Consensus 737 ~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~ 816 (936)
..|..|.||||+|+.
T Consensus 168 -----------------------------------------------------------------~~d~~g~t~L~~A~~ 182 (364)
T 3ljn_A 168 -----------------------------------------------------------------AKDKADETPLMRAME 182 (364)
T ss_dssp -----------------------------------------------------------------CCCTTSCCHHHHHHH
T ss_pred -----------------------------------------------------------------ccCCCCCCHHHHHHH
Confidence 336678899999999
Q ss_pred cCCHHHHHHHHhCCCC-----cccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHH
Q psy8454 817 LGHYDLVRLLINYRAD-----INIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLA 891 (936)
Q Consensus 817 ~g~~~~v~~LL~~g~~-----v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv 891 (936)
.|+.+++++|+++|++ ++..+ ..|.||||+|+..|+.++|++|+++| +|+|.+|..|+||||+|++.|+.++|
T Consensus 183 ~g~~~~v~~Ll~~g~~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~g~~~~v 260 (364)
T 3ljn_A 183 FRNREALDLMMDTVPSKSSLRLDYAN-KQGNSHLHWAILINWEDVAMRFVEMG-IDVNMEDNEHTVPLYLSVRAAMVLLT 260 (364)
T ss_dssp TTCHHHHHHHHHHCSCSSSCCTTCCC-TTCCCTTHHHHTTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHHHHTCCHHHH
T ss_pred cCCHHHHHHHHhcccccccccccccC-CCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHhChHHHH
Confidence 9999999999999998 88888 89999999999999999999999998 99999999999999999999999999
Q ss_pred HHHHHcCCCCcC------------cccCCCcHHHHHHHcCCHHHHHHHhhhC
Q psy8454 892 TLLLKSGARPQI------------KNHYGQTCLHMAQQMTSLSLVRVLTHEA 931 (936)
Q Consensus 892 ~~LL~~Ga~~~~------------~d~~g~T~L~~A~~~g~~~iv~~Ll~~~ 931 (936)
++|+++|++++. .+..|+||++.|+..|+.+.+..|+.++
T Consensus 261 ~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~ 312 (364)
T 3ljn_A 261 KELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEK 312 (364)
T ss_dssp HHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHHH
Confidence 999999877533 5677899999999999887777776554
No 13
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=6.5e-38 Score=337.39 Aligned_cols=269 Identities=22% Similarity=0.218 Sum_probs=208.2
Q ss_pred CCChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcC
Q psy8454 454 ISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYG 533 (936)
Q Consensus 454 ~~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g 533 (936)
..+.++||.|+..|+.+.+..++..+....... . + .....+.++..|.||||+|+..|
T Consensus 13 ~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~------~--------------l--~~~~~~~~~~~g~t~L~~Aa~~g 70 (285)
T 3d9h_A 13 GLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI------R--------------L--LSNPLMGDAVSDWSPMHEAAIHG 70 (285)
T ss_dssp -----------------------------CCSE------E--------------C--CCCTTCSSSCCSCCHHHHHHHTT
T ss_pred hHHHHHHHHHhhcCCCCCcccCCCCccccccch------h--------------h--hhCcccCCCccCCCHHHHHHHcC
Confidence 356789999999999999998887765432210 0 0 00123458889999999999999
Q ss_pred CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccc
Q psy8454 534 RIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQ 613 (936)
Q Consensus 534 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~ 613 (936)
+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++++.
T Consensus 71 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~- 149 (285)
T 3d9h_A 71 HQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGA- 149 (285)
T ss_dssp CHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC-
T ss_pred CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999763
Q ss_pred cccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccCCC
Q psy8454 614 EVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPK 693 (936)
Q Consensus 614 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~ 693 (936)
+++. +..|.||||+|++.|+.+++++|+++|++++
T Consensus 150 -----~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--------------------------------------- 184 (285)
T 3d9h_A 150 -----SVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNID--------------------------------------- 184 (285)
T ss_dssp -----CSSC-SCTTSCHHHHHHHHTCHHHHHHHHHTTCCTT---------------------------------------
T ss_pred -----CCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC---------------------------------------
Confidence 4443 3459999999999999999999999887644
Q ss_pred CCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCc
Q psy8454 694 EKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACH 773 (936)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~ 773 (936)
T Consensus 185 -------------------------------------------------------------------------------- 184 (285)
T 3d9h_A 185 -------------------------------------------------------------------------------- 184 (285)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCC
Q psy8454 774 PLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNN 853 (936)
Q Consensus 774 ~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~ 853 (936)
..+..|.||||+|+..|+.+++++|+++|++++. + ..|.||||+|+..|+
T Consensus 185 ----------------------------~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~-~~g~t~L~~A~~~~~ 234 (285)
T 3d9h_A 185 ----------------------------HKISHLGTPLYLACENQQRACVKKLLESGADVNQ-G-KGQDSPLHAVVRTAS 234 (285)
T ss_dssp ----------------------------CCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-C-BTTBCHHHHHHHTTC
T ss_pred ----------------------------CcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-C-CCCCCHHHHHHHcCC
Confidence 3366788999999999999999999999999995 5 789999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCcC
Q psy8454 854 LSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKS-GARPQI 903 (936)
Q Consensus 854 ~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~-Ga~~~~ 903 (936)
.+++++|+++| ++++.+|..|+||||+|+ ++.+++++|+++ |+++..
T Consensus 235 ~~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~~ 282 (285)
T 3d9h_A 235 EELACLLMDFG-ADTQAKNAEGKRPVELVP--PESPLAQLFLEREGASLPK 282 (285)
T ss_dssp HHHHHHHHHTT-CCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC------
T ss_pred HHHHHHHHHCC-CCCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCCCC
Confidence 99999999998 999999999999999999 557999999998 887653
No 14
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=5.2e-38 Score=332.17 Aligned_cols=216 Identities=30% Similarity=0.363 Sum_probs=167.4
Q ss_pred HhCcHHHHHHHHhCCCCCCc-CCCCCCcHHHHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHH
Q psy8454 564 TRGHQNVLLLLLHSGASINL-TDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSI 642 (936)
Q Consensus 564 ~~g~~~iv~~Ll~~g~~~~~-~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~i 642 (936)
..++.+++++|++.|++++. .|..|.||||+|+..|+.++|++|++++ ++++..+..|.||||+|+..|+.++
T Consensus 32 ~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~A~~~~~~~~ 105 (253)
T 1yyh_A 32 EEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEAS------ADANIQDNMGRTPLHAAVSADAQGV 105 (253)
T ss_dssp --------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred cCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC------CCCCCCCCCCCCHHHHHHHcCCHHH
Confidence 34477777888877777754 4677788888888888888888888754 4667777778888888888888888
Q ss_pred HHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccc
Q psy8454 643 IQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISN 722 (936)
Q Consensus 643 v~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (936)
+++|++.|..
T Consensus 106 v~~Ll~~~~~---------------------------------------------------------------------- 115 (253)
T 1yyh_A 106 FQILIRNRAT---------------------------------------------------------------------- 115 (253)
T ss_dssp HHHHHHSTTS----------------------------------------------------------------------
T ss_pred HHHHHHcCCC----------------------------------------------------------------------
Confidence 8888876541
Q ss_pred cccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCccc
Q psy8454 723 VNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINI 802 (936)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~ 802 (936)
+++.
T Consensus 116 ----------------------------------------------------------------------------~~~~ 119 (253)
T 1yyh_A 116 ----------------------------------------------------------------------------DLDA 119 (253)
T ss_dssp ----------------------------------------------------------------------------CTTC
T ss_pred ----------------------------------------------------------------------------Cccc
Confidence 1244
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHH
Q psy8454 803 CNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYA 882 (936)
Q Consensus 803 ~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A 882 (936)
.+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++.| ++++.+|..|.||||+|
T Consensus 120 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d-~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpL~~A 197 (253)
T 1yyh_A 120 RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD-DLGKSALHWAAAVNNVDAAVVLLKNG-ANKDMQNNREETPLFLA 197 (253)
T ss_dssp CCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBC-TTSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHH
T ss_pred cCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcC-CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHH
Confidence 46778899999999999999999999999999988 89999999999999999999999998 99999999999999999
Q ss_pred HHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCCC
Q psy8454 883 AINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPF 933 (936)
Q Consensus 883 ~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~ 933 (936)
++.|+.+++++|+++|++++.+|..|+||+++|+++|+.+|+++|....+.
T Consensus 198 ~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~~ 248 (253)
T 1yyh_A 198 AREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHH 248 (253)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC----
T ss_pred HHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999876543
No 15
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=1.2e-38 Score=357.02 Aligned_cols=285 Identities=22% Similarity=0.266 Sum_probs=231.2
Q ss_pred hhhhhhhHHHhhhhhc-ccCCChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCC
Q psy8454 436 SDLTTQLKVYNKYNNY-KKISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPT 514 (936)
Q Consensus 436 ~~~~~~~~~~~~l~~~-~~~~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (936)
++..+..++.+.+... .+..+.++|+.|+..|+ ++++.|+.. .
T Consensus 73 ~~~~g~~~~~~~~~~~~~~~~g~t~L~~Aa~~~~-~~~~~L~~~-----------------------------------~ 116 (373)
T 2fo1_E 73 NDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGSY-AITEPITRE-----------------------------------S 116 (373)
T ss_dssp ---------------------CCCHHHHHHHSSS-CCCSCCSTT-----------------------------------T
T ss_pred CCccccccccccccccCCCCCCccHHHHHhcCCc-hHHHHhccc-----------------------------------c
Confidence 3445666666654433 35577889999998554 566555432 2
Q ss_pred cccCC-CCCCcHHHHHHHcCCHHHHHHHH--------hcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCC
Q psy8454 515 TQSMD-DRGFTVLHVAALYGRIKVVDLVL--------ELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTD 585 (936)
Q Consensus 515 ~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll--------~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d 585 (936)
++..+ ..|.||||+|+..|+.+++++|+ +.|+++|.+|..|.||||+|+..|+.+++++|+++|++++..+
T Consensus 117 ~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~ 196 (373)
T 2fo1_E 117 VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYN 196 (373)
T ss_dssp TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC
T ss_pred ccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccC
Confidence 23355 67999999999999998887776 7899999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhC---CHHHHHHHHHCCCCCCCcccCCCC
Q psy8454 586 NEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG---YTSIIQLLLDHGANPTLENKRKVT 662 (936)
Q Consensus 586 ~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g---~~~iv~~Ll~~ga~~~~~d~~g~t 662 (936)
..|.||||+|+..|+.+++++|++++. .+.+++..+..|.||||+|+..| +.+++++|+++|++++..+.
T Consensus 197 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~---~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~---- 269 (373)
T 2fo1_E 197 KSERSALHQAAANRDFGMMVYMLNSTK---LKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA---- 269 (373)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHTTSHH---HHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSG----
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHhcCc---cccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccc----
Confidence 999999999999999999999998652 23578889999999999999998 89999999999988765321
Q ss_pred hhhhhhchhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHH
Q psy8454 663 PLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQ 742 (936)
Q Consensus 663 ~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (936)
T Consensus 270 -------------------------------------------------------------------------------- 269 (373)
T 2fo1_E 270 -------------------------------------------------------------------------------- 269 (373)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHH
Q psy8454 743 LFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDL 822 (936)
Q Consensus 743 l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~ 822 (936)
...+..+..|.||||+|+..|+.++
T Consensus 270 -------------------------------------------------------~~~~~~d~~g~t~Lh~A~~~g~~~~ 294 (373)
T 2fo1_E 270 -------------------------------------------------------ARKDSEKYKGRTALHYAAQVSNMPI 294 (373)
T ss_dssp -------------------------------------------------------GGTSSSSCCCCCTHHHHHSSCCHHH
T ss_pred -------------------------------------------------------cccCcccccCCCHHHHHHHhCCHHH
Confidence 0024457889999999999999999
Q ss_pred HHHHHhCC-CCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy8454 823 VRLLINYR-ADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGAR 900 (936)
Q Consensus 823 v~~LL~~g-~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~ 900 (936)
+++|+++| ++++..+ ..|.||||+|+..|+.++|++|+++| ++++.+|..|+||||+|+.+|+.++|++|+++|++
T Consensus 295 v~~Ll~~~~~~~n~~d-~~g~TpL~~A~~~g~~~iv~~Ll~~g-ad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 295 VKYLVGEKGSNKDKQD-EDGKTPIMLAAQEGRIEVVMYLIQQG-ASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371 (373)
T ss_dssp HHHHHHHSCCCTTCCC-TTCCCHHHHHHHHTCHHHHHHHHHTT-CCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred HHHHHHhcCCCccCcC-CCCCCHHHHHHHcCCHHHHHHHHHcC-CCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence 99999876 9999999 89999999999999999999999998 99999999999999999999999999999999886
No 16
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1.1e-37 Score=335.41 Aligned_cols=265 Identities=27% Similarity=0.305 Sum_probs=195.1
Q ss_pred ccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCC---CCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHH
Q psy8454 516 QSMDDRGFTVLHVAALYGRIKVVDLVLELGAD---TNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTAL 592 (936)
Q Consensus 516 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L 592 (936)
+.+|..|.||||+|+..|+.+++++|++.|++ ++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL 82 (282)
T 1oy3_D 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL 82 (282)
T ss_dssp CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence 45788899999999999999999999999888 788889999999999999999999999999999999999999999
Q ss_pred HHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhH
Q psy8454 593 HLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHV 672 (936)
Q Consensus 593 ~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~ 672 (936)
|+|+..|+.+++++|++.++.. .... ..+ ++..+. ......+.++++.+..
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~------~~~~--~~~----------------~~~~~~--~~~~~~~~~~~~~~~~--- 133 (282)
T 1oy3_D 83 HLACRVRAHTCACVLLQPRPSH------PRDA--SDT----------------YLTQSQ--DCTPDTSHAPAAVDSQ--- 133 (282)
T ss_dssp HHHTTTTCHHHHHHHSSSCCSS------CCCC------------------------------------------------
T ss_pred HHHHHcCCcchhHhhhccCCCC------chhh--HHH----------------Hhhccc--ccCcchhcchhhhccc---
Confidence 9999999999999999866321 1000 000 000000 0011111222221110
Q ss_pred HHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcH
Q psy8454 673 AKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEI 752 (936)
Q Consensus 673 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~ 752 (936)
.+..
T Consensus 134 ----------------------------------------------------------------------------~~~~ 137 (282)
T 1oy3_D 134 ----------------------------------------------------------------------------PNPE 137 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------------------------------------------------------cccc
Confidence 0000
Q ss_pred HHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q psy8454 753 KLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRAD 832 (936)
Q Consensus 753 ~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~ 832 (936)
......+...+++++..+..|.||||+|+..|+.+++++|+++|++
T Consensus 138 ----------------------------------~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 183 (282)
T 1oy3_D 138 ----------------------------------NEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD 183 (282)
T ss_dssp ----------------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred ----------------------------------hhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 0011134455677899999999999999999999999999999999
Q ss_pred cccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHH
Q psy8454 833 INIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCL 912 (936)
Q Consensus 833 v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L 912 (936)
++..+...|.||||+|+..|+.++|++|+++| ++++.+|..|+||||+|++.|+.+++++|+++||+++.+|..|.||+
T Consensus 184 ~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl 262 (282)
T 1oy3_D 184 LNKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPC 262 (282)
T ss_dssp TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC-------
T ss_pred CCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcC-CCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccc
Confidence 99998556999999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCC
Q psy8454 913 HMAQQMTS 920 (936)
Q Consensus 913 ~~A~~~g~ 920 (936)
++|.....
T Consensus 263 ~~a~~~~~ 270 (282)
T 1oy3_D 263 SSSGSDSD 270 (282)
T ss_dssp --------
T ss_pred cccCCccc
Confidence 99987654
No 17
>2ot3_A RAB5 GDP/GTP exchange factor; rabex-5, VPS9 domain, vesicular traffic, protein transport; 2.10A {Homo sapiens} SCOP: a.222.1.1 PDB: 1txu_A
Probab=100.00 E-value=2.8e-37 Score=321.70 Aligned_cols=232 Identities=19% Similarity=0.274 Sum_probs=199.9
Q ss_pred cCccccHHHHHHHhhccccCchHHHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHhchhhHHhhhhcHHH
Q psy8454 160 ISNIQTLRDCIDLLWTESKGKEIFEKMDEAIKMFLLTNDQFEYNPFDKQKYLVEKLYQNCLNICLKDNKLRQSISINKYL 239 (936)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (936)
+....++.++.+||+. ..++ ..++.+.+++|+..|....++.+++..+.|+++|..+.+.+..+ |. ..++.
T Consensus 10 ~~~~~~~~df~~FL~~--~~~~-~~~l~k~i~sFi~~f~~~~~~~~~e~~~~v~~f~~~~~~~l~~~--~~----~s~~~ 80 (274)
T 2ot3_A 10 IETDRVSKEFIEFLKT--FHKT-GQEIYKQTKLFLEGMHYKRDLSIEEQSECAQDFYHNVAERMQTR--GK----VPPER 80 (274)
T ss_dssp ------CHHHHHHHHT--THHH-HHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHST--TC----CCHHH
T ss_pred ccCCCChHHHHHHHHH--Hhcc-cHhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH--hc----cCHHH
Confidence 3456678899999999 5444 57899999999999987667889999999999999999998765 22 22344
Q ss_pred HHHHHHHHHHHHHHhhHHHHhcccCccChHHHHHHHHHHHhccCCCCccccccccc-----ccchHHHHHHHhcccccCC
Q psy8454 240 IDSIKLAVETYMHHGIYKTLIKGITACTALEDAQFNKMIRNLSDIQLKDLDIREDL-----YDTVPRARSEISHIDCYST 314 (936)
Q Consensus 240 ~~~i~~~~E~yv~~~ly~~~~~~~~~~~~~~d~~l~~~~~~l~~~~~~~l~i~~~~-----~~~~~~a~~~l~~i~~~~~ 314 (936)
.+.++++||+|||.+||+.+|++..+.+..+|..|+++|+.|+++++++|||+.++ ...|..|++||++|+.++|
T Consensus 81 ~~~~~~~iEk~v~~~ly~~lf~~~~~~~~~~D~~l~~ki~~L~~i~~~~L~I~~~~~~p~~~~~~~~A~~eL~~i~~~~s 160 (274)
T 2ot3_A 81 VEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALRWVTPQMLCVPVNEDIPEVSDMVVKAITDIIEMDSKRV 160 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCTTSSHHHHHHHHHHHHHHTTTCCTTTTTCCCCTTSHHHHHHHHHHHHHHHHGGGCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHcCCCHHHcCCCcccCCchHHHHHHHHHHHHHHccccCC
Confidence 78999999999999999999999998899999999999999999999999998654 3568999999999999999
Q ss_pred cchhHHHHHHHHHHHHhhcccccccCCCCCccchhhHHHhHhhhcCCcchHHHHHHHHHhccCCCCCcccCcchhhHHHH
Q psy8454 315 ILGKIGCVRRCISAISKEDTRDKLQGNIITVDDLLPMIVFLVVKCALPNWIAHLTYMKQFHFSQSSNVCIDQDSFLITSL 394 (936)
Q Consensus 315 p~~Kl~~l~~~~~~i~~~~~~~~~~~~~~~aD~llp~li~vvi~a~~~~l~s~l~yi~~f~~~~~~~~~~~~~~y~lt~~ 394 (936)
|+||+.||++||+.|++.... ..+.+++||||||+||||||||+||+|.||+.||++|+.++.. ..||.|||||||
T Consensus 161 P~dKL~~l~~~~k~I~~~l~~--~~~~~~~ADd~LP~Liyvvika~~~~l~s~l~yI~~F~~~~~l--~~GE~gY~lttl 236 (274)
T 2ot3_A 161 PRDKLACITKCSKHIFNAIKI--TKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRL--MTGEDGYYFTNL 236 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHSSCBCHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHSCTTTT--TSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHHHHHHcCcchHHHHHHHHHHHcCcccc--cCCHHHHHHHHH
Confidence 999999999999999986653 2346799999999999999999999999999999999988642 149999999999
Q ss_pred HHHHHHHHcC
Q psy8454 395 EASIEHIKSG 404 (936)
Q Consensus 395 ~aa~~~i~~~ 404 (936)
++|+.||++-
T Consensus 237 ~aAv~fI~~l 246 (274)
T 2ot3_A 237 CCAVAFIEKL 246 (274)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999999874
No 18
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=3.5e-37 Score=323.21 Aligned_cols=132 Identities=36% Similarity=0.438 Sum_probs=108.2
Q ss_pred ccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHH
Q psy8454 801 NICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALH 880 (936)
Q Consensus 801 n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~ 880 (936)
+..+..|.||||+|+..|+.+++++|+++|++++..+...|.||||+|+..|+.+++++|+++| ++++.+|..|+||||
T Consensus 110 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~ 188 (241)
T 1k1a_A 110 EARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHG-ANVNAQMYSGSSALH 188 (241)
T ss_dssp TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCBCTTSCBHHH
T ss_pred cccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHH
Confidence 4456678888888888888888888888888888777567888888888888888888888887 888888888999999
Q ss_pred HHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCCC
Q psy8454 881 YAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPF 933 (936)
Q Consensus 881 ~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~ 933 (936)
+|++.|+.+++++|+++|++++.+|..|+||||+|+..|+.++++.|.+++++
T Consensus 189 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~aS 241 (241)
T 1k1a_A 189 SASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPAS 241 (241)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC-------
T ss_pred HHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCCCC
Confidence 99999999999999999999888888899999999999999998888877653
No 19
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=6.6e-37 Score=323.71 Aligned_cols=231 Identities=25% Similarity=0.322 Sum_probs=180.7
Q ss_pred CcccCCCCCCcHHHHHHHcC-------------CHHHHHHHHhcCCCCCC-CCCCCCcHHHHHHHhCcHHHHHHHHhCCC
Q psy8454 514 TTQSMDDRGFTVLHVAALYG-------------RIKVVDLVLELGADTNS-QDLCGCSPLHYAATRGHQNVLLLLLHSGA 579 (936)
Q Consensus 514 ~~~~~~~~g~t~L~~A~~~g-------------~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~ 579 (936)
+++.+|..|.||||+|+..| +.+++++|++.|++++. .|..|.||||+|+..|+.+++++|++.|+
T Consensus 2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~ 81 (253)
T 1yyh_A 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA 81 (253)
T ss_dssp --------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 45668999999999999987 89999999999999865 48999999999999999999999999999
Q ss_pred CCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccC
Q psy8454 580 SINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKR 659 (936)
Q Consensus 580 ~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~ 659 (936)
+++.+|..|.||||+|+..|+.+++++|++.++ .+++..+..|.||||+|++.|+.+++++|++.|++++
T Consensus 82 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----- 151 (253)
T 1yyh_A 82 DANIQDNMGRTPLHAAVSADAQGVFQILIRNRA-----TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN----- 151 (253)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTT-----SCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTT-----
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----CCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCC-----
Confidence 999999999999999999999999999998753 3678889999999999999999999999999887644
Q ss_pred CCChhhhhhchhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhh
Q psy8454 660 KVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKK 739 (936)
Q Consensus 660 g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (936)
T Consensus 152 -------------------------------------------------------------------------------- 151 (253)
T 1yyh_A 152 -------------------------------------------------------------------------------- 151 (253)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCC
Q psy8454 740 VEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGH 819 (936)
Q Consensus 740 ~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~ 819 (936)
..+..|.||||+|+..|+
T Consensus 152 --------------------------------------------------------------~~d~~g~t~L~~A~~~~~ 169 (253)
T 1yyh_A 152 --------------------------------------------------------------AVDDLGKSALHWAAAVNN 169 (253)
T ss_dssp --------------------------------------------------------------CBCTTSCBHHHHHHHHTC
T ss_pred --------------------------------------------------------------CcCCCCCCHHHHHHHcCC
Confidence 336678899999999999
Q ss_pred HHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q psy8454 820 YDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSG 898 (936)
Q Consensus 820 ~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~G 898 (936)
.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|++.|+.+++++|.+..
T Consensus 170 ~~~v~~Ll~~ga~~~~~~-~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~ 246 (253)
T 1yyh_A 170 VDAAVVLLKNGANKDMQN-NREETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDRLPRDIAQERMHHDIVRLLDLEH 246 (253)
T ss_dssp HHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC--
T ss_pred HHHHHHHHHcCCCCCCcC-CCCCCHHHHHHHCCCHHHHHHHHHcC-CCccccccCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence 999999999999999998 89999999999999999999999999 999999999999999999999999999998653
No 20
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=2.8e-36 Score=315.53 Aligned_cols=126 Identities=31% Similarity=0.425 Sum_probs=100.6
Q ss_pred cCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHH
Q psy8454 802 ICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHY 881 (936)
Q Consensus 802 ~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~ 881 (936)
..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++.| ++++.+|..|.||||+
T Consensus 106 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~ 183 (237)
T 3b7b_A 106 CQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRD-NEENICLHWAAFSGCVDIAEILLAAK-CDLHAVNIHGDSPLHI 183 (237)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHHCCHHHHHHHHTTT-CCTTCCCTTCCCHHHH
T ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccC-CCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCCcCCCCCCHHHH
Confidence 335567777888888888888888888888887777 77888888888888888888888887 8888888888888888
Q ss_pred HHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhh
Q psy8454 882 AAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTH 929 (936)
Q Consensus 882 A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~ 929 (936)
|++.|+.+++++|+++|++++.+|..|+||||+|+.+|+...+..|++
T Consensus 184 A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~ 231 (237)
T 3b7b_A 184 AARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSK 231 (237)
T ss_dssp HHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred HHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888765555543
No 21
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1.5e-36 Score=318.50 Aligned_cols=234 Identities=26% Similarity=0.333 Sum_probs=209.8
Q ss_pred ccCCCCCCcHHHHHHHcCCHHHHHHHHh----cCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcH
Q psy8454 516 QSMDDRGFTVLHVAALYGRIKVVDLVLE----LGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTA 591 (936)
Q Consensus 516 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~ 591 (936)
+.+|.+|.||||+|+..|+.+++++|++ .|++++..|..|.||||+|+..|+.+++++|++.|++++..+..|.||
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 82 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA 82 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence 3478899999999999999999999997 799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchh
Q psy8454 592 LHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLH 671 (936)
Q Consensus 592 L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~ 671 (936)
||+|+..|+.+++++|++.+.. ...+++..+..|.||||.|++.|+.+++++|++.|++++..+
T Consensus 83 l~~A~~~~~~~~~~~Ll~~~~~--~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~-------------- 146 (241)
T 1k1a_A 83 AHLACEHRSPTCLRALLDSAAP--GTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVD-------------- 146 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCT--TSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC--------------
T ss_pred HHHHHHcCCHHHHHHHHHcCCC--ccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCccccc--------------
Confidence 9999999999999999997642 234678889999999999999999999999999987755321
Q ss_pred HHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCc
Q psy8454 672 VAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNE 751 (936)
Q Consensus 672 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~ 751 (936)
T Consensus 147 -------------------------------------------------------------------------------- 146 (241)
T 1k1a_A 147 -------------------------------------------------------------------------------- 146 (241)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy8454 752 IKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRA 831 (936)
Q Consensus 752 ~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~ 831 (936)
+..|.||||+|+..|+.+++++|+++|+
T Consensus 147 ----------------------------------------------------~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 174 (241)
T 1k1a_A 147 ----------------------------------------------------IKSGRSPLIHAVENNSLSMVQLLLQHGA 174 (241)
T ss_dssp ----------------------------------------------------TTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred ----------------------------------------------------ccCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 2568899999999999999999999999
Q ss_pred CcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q psy8454 832 DINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899 (936)
Q Consensus 832 ~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga 899 (936)
+++..+ ..|.||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+..|+.++++.|++.++
T Consensus 175 ~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~a 240 (241)
T 1k1a_A 175 NVNAQM-YSGSSALHSASGRGLLPLVRTLVRSG-ADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240 (241)
T ss_dssp CTTCBC-TTSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCTTTTCSSHHHHHHHTC------
T ss_pred CCCCcC-CCCCCHHHHHHHcCCHHHHHHHHhcC-CCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence 999998 89999999999999999999999999 9999999999999999999999999999998776
No 22
>2efe_A Similarity to vacuolar protein sorting-associated VPS9; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_A 2efc_A* 2efh_A*
Probab=100.00 E-value=9e-37 Score=318.07 Aligned_cols=230 Identities=16% Similarity=0.254 Sum_probs=191.7
Q ss_pred cHHHHHHHhhccccCchHHHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHhchhhHHhhhhcHHHHHHHH
Q psy8454 165 TLRDCIDLLWTESKGKEIFEKMDEAIKMFLLTNDQFEYNPFDKQKYLVEKLYQNCLNICLKDNKLRQSISINKYLIDSIK 244 (936)
Q Consensus 165 ~~~~~~~~l~~~~~~~~~~~~~~~~i~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 244 (936)
.+.++.+||.. ...+...++.+.|++|+..|.+.. +.+++..+.|+++|..+.+.+..++.|.. . .++..+++.
T Consensus 8 ~~~~f~~Fl~~--l~~~~a~~~~~~i~~Fi~~f~~~~-~~~~e~~~~v~~f~~~~~~~l~~~~~~~~-~--~~~~~~~~~ 81 (267)
T 2efe_A 8 VFLGLHDFLER--MRKPSAGDFVKSIKSFIVSFSNNA-PDPEKDCAMVQEFFSKMEAAFRAHPLWSG-C--SEEELDSAG 81 (267)
T ss_dssp -------------CCSGGGHHHHHHHHHHHHTTTTSC-CCHHHHHHHHHHHHHHHHHHHHSCGGGTT-C--CHHHHHHHH
T ss_pred chhHHHHHHHH--HcccchhHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHHHHHHHhcCccccc-C--CHHHHHHHH
Confidence 34566677776 555666899999999999998754 67889999999999988888877765442 2 223378999
Q ss_pred HHHHHHHHHhhHHHHhcccCccChHHHHHHHHHHHhc-cCCCCcccccccccc--cchHHHHHHHhcccccCCcchhHHH
Q psy8454 245 LAVETYMHHGIYKTLIKGITACTALEDAQFNKMIRNL-SDIQLKDLDIREDLY--DTVPRARSEISHIDCYSTILGKIGC 321 (936)
Q Consensus 245 ~~~E~yv~~~ly~~~~~~~~~~~~~~d~~l~~~~~~l-~~~~~~~l~i~~~~~--~~~~~a~~~l~~i~~~~~p~~Kl~~ 321 (936)
++||+|||++||+.+|++... +..+|..|+++|+.| ++++++||||++++. .+|..|++||++|+.++||+||+.|
T Consensus 82 e~iEk~v~~~ly~~lf~~~~~-d~~~D~~L~~ki~~l~~~i~~~~L~I~~~~~~~~~~~~A~~eL~ki~~~~sP~dKl~~ 160 (267)
T 2efe_A 82 DGLEKYVMTKLFTRVFASNTE-EVIADEKLFQKMSLVQQFISPENLDIQPTFQNESSWLLAQKELQKINMYKAPRDKLVC 160 (267)
T ss_dssp HHHHHHHHHHHHHHHSSCSHH-HHHHHHHHHHHHHHHTTTCCGGGGTCCGGGCCTTCSHHHHHHHHTGGGCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCchh-hHHHHHHHHHHHHHHHccCCHHHcCCCCccCCcccHHHHHHHHHHhcccCCHHHHHHH
Confidence 999999999999999998765 688999999999999 699999999999886 5799999999999999999999999
Q ss_pred HHHHHHHHHhhccc--ccccCCCCCccchhhHHHhHhhhcCCcchHHHHHHHHHhccCCCCCcccCcchhhHHHHHHHHH
Q psy8454 322 VRRCISAISKEDTR--DKLQGNIITVDDLLPMIVFLVVKCALPNWIAHLTYMKQFHFSQSSNVCIDQDSFLITSLEASIE 399 (936)
Q Consensus 322 l~~~~~~i~~~~~~--~~~~~~~~~aD~llp~li~vvi~a~~~~l~s~l~yi~~f~~~~~~~~~~~~~~y~lt~~~aa~~ 399 (936)
|++||+.|++.... ......++|||||||+||||||||+||+|.||+.||++|+.++.. .||.|||||||++|+.
T Consensus 161 l~~~~k~I~~~l~~~~~~~~~~~~~ADd~LP~Liyvvika~~~~L~s~l~yI~~f~~~~~l---~gE~gY~lt~l~aA~~ 237 (267)
T 2efe_A 161 ILNCCKVINNLLLNASIASNENAPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKL---VGEAAYFFTNILSAES 237 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHSCTTTS---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccccCCCChhHHHHHHHHHHHhcCcccHHHHHHHHHHHcCcccc---CCHHHHHHHHHHHHHH
Confidence 99999999985532 123457799999999999999999999999999999999998776 6999999999999999
Q ss_pred HHHcC
Q psy8454 400 HIKSG 404 (936)
Q Consensus 400 ~i~~~ 404 (936)
||++-
T Consensus 238 fI~~l 242 (267)
T 2efe_A 238 FISNI 242 (267)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 99864
No 23
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=2.9e-36 Score=320.27 Aligned_cols=220 Identities=31% Similarity=0.430 Sum_probs=203.6
Q ss_pred CCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHH
Q psy8454 554 CGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHA 633 (936)
Q Consensus 554 ~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~ 633 (936)
+|+||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++++ ++++..+..|.||||+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~ 75 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHG------AQVNGVTADWHTPLFN 75 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTT------CCTTCCCTTSCCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCC------CCCCCCCCCCCCHHHH
Confidence 6899999999999999999999999999999999999999999999999999999865 6788999999999999
Q ss_pred HHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCccccccc
Q psy8454 634 AARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYS 713 (936)
Q Consensus 634 A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (936)
|+..|+.+++++|+++|++++.
T Consensus 76 A~~~~~~~~v~~Ll~~g~~~~~---------------------------------------------------------- 97 (261)
T 2xai_A 76 ACVSGSWDCVNLLLQHGASVQP---------------------------------------------------------- 97 (261)
T ss_dssp HHHHTCHHHHHHHHHTTCCSSC----------------------------------------------------------
T ss_pred HHHcCCHHHHHHHHHCCCCCCC----------------------------------------------------------
Confidence 9999999999999999876542
Q ss_pred ccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccc
Q psy8454 714 DVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPV 793 (936)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 793 (936)
T Consensus 98 -------------------------------------------------------------------------------- 97 (261)
T 2xai_A 98 -------------------------------------------------------------------------------- 97 (261)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCC
Q psy8454 794 TDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDY 873 (936)
Q Consensus 794 ~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~ 873 (936)
+.+|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++.| +++|. +.
T Consensus 98 ----------~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~-~~ 164 (261)
T 2xai_A 98 ----------ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKI-SHLGTPLYLACENQQRACVKKLLESG-ADVNQ-GK 164 (261)
T ss_dssp ----------SCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCB-TTTBCHHHHHHHTTCHHHHHHHHHHT-CCTTC-CB
T ss_pred ----------CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCC-CCCCCHHHHHHHhCCHHHHHHHHHcC-CCCCC-CC
Confidence 2347899999999999999999999999999998 89999999999999999999999999 99996 88
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCC
Q psy8454 874 RGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAP 932 (936)
Q Consensus 874 ~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~ 932 (936)
.|.||||+|++.|+.++|++|+++|++++.+|..|+||+|+|+.++ +++++|++.+.
T Consensus 165 ~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~ 221 (261)
T 2xai_A 165 GQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLEREG 221 (261)
T ss_dssp TTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTTC--THHHHHHHC-C
T ss_pred CCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCChhhhccccc--cHHHHHHhccC
Confidence 9999999999999999999999999999999999999999999665 58999988654
No 24
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=4.9e-37 Score=343.47 Aligned_cols=249 Identities=21% Similarity=0.276 Sum_probs=216.3
Q ss_pred CCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccccccccCccccc
Q psy8454 545 GADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVN 624 (936)
Q Consensus 545 g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~ 624 (936)
+.+.+..|..|.||||+|+..|+.++|++|++.|++++.+|..|.||||+|+..|+.++|++|+++++ +..+
T Consensus 10 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~--------~~~~ 81 (364)
T 3ljn_A 10 KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGE--------VHSL 81 (364)
T ss_dssp ------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCC--------CCCC
T ss_pred CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCC--------Cccc
Confidence 45667788899999999999999999999999999999999999999999999999999999999874 2334
Q ss_pred CCCChHHHHHHHhCCHHHHHHHHHC----CCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccCCCCCCCCCC
Q psy8454 625 NQGDSPLHAAARWGYTSIIQLLLDH----GANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPP 700 (936)
Q Consensus 625 ~~g~t~L~~A~~~g~~~iv~~Ll~~----ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 700 (936)
..|.||||+|+..|+.+++++|++. |++++.... ..
T Consensus 82 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~--------------------~~-------------------- 121 (364)
T 3ljn_A 82 WHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLN--------------------EC-------------------- 121 (364)
T ss_dssp BTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHT--------------------CC--------------------
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHh--------------------hc--------------------
Confidence 5799999999999999999999998 443321000 00
Q ss_pred CCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcc
Q psy8454 701 SPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAK 780 (936)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~ 780 (936)
T Consensus 122 -------------------------------------------------------------------------------- 121 (364)
T 3ljn_A 122 -------------------------------------------------------------------------------- 121 (364)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcC--CHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHH
Q psy8454 781 CKEDVVESESRPVTDECLNINICNSDGYTALHIATSLG--HYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858 (936)
Q Consensus 781 ~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g--~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~ 858 (936)
.......++++..+..|.||||+|+..| +.+++++|+++|++++..+ ..|.||||+|+..|+.++|+
T Consensus 122 ----------~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d-~~g~t~L~~A~~~g~~~~v~ 190 (364)
T 3ljn_A 122 ----------DEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKD-KADETPLMRAMEFRNREALD 190 (364)
T ss_dssp ----------CCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCC-TTSCCHHHHHHHTTCHHHHH
T ss_pred ----------chHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccC-CCCCCHHHHHHHcCCHHHHH
Confidence 0000112335677889999999999999 9999999999999999999 89999999999999999999
Q ss_pred HHHhcCCCC-----CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCCC
Q psy8454 859 LLLAAKQCN-----VNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPF 933 (936)
Q Consensus 859 ~LL~~g~~d-----vn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~ 933 (936)
+|++.| ++ +|.+|..|+||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.++|++|+++++.
T Consensus 191 ~Ll~~g-~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ 269 (364)
T 3ljn_A 191 LMMDTV-PSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDV 269 (364)
T ss_dssp HHHHHC-SCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCH
T ss_pred HHHhcc-cccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCc
Confidence 999998 77 999999999999999999999999999999999999999999999999999999999999999764
No 25
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.5e-35 Score=310.10 Aligned_cols=229 Identities=27% Similarity=0.430 Sum_probs=212.1
Q ss_pred CcccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHH
Q psy8454 514 TTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALH 593 (936)
Q Consensus 514 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~ 593 (936)
.++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||
T Consensus 3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 82 (237)
T 3b7b_A 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLH 82 (237)
T ss_dssp CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHH
T ss_pred CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Confidence 45668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHH
Q psy8454 594 LATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVA 673 (936)
Q Consensus 594 ~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~ 673 (936)
+|+..|+.+++++|++.+. .+++..+..|.||||+|++.|+.+++++|+++|++++
T Consensus 83 ~A~~~~~~~~~~~Ll~~~~-----~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~------------------- 138 (237)
T 3b7b_A 83 LAAKKGHYEVVQYLLSNGQ-----MDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN------------------- 138 (237)
T ss_dssp HHHHTTCHHHHHHHHTTTC-----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-------------------
T ss_pred HHHHcCCHHHHHHHHhCCC-----CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-------------------
Confidence 9999999999999998652 4678889999999999999999999999999887644
Q ss_pred HHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHH
Q psy8454 674 KLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIK 753 (936)
Q Consensus 674 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~ 753 (936)
T Consensus 139 -------------------------------------------------------------------------------- 138 (237)
T 3b7b_A 139 -------------------------------------------------------------------------------- 138 (237)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCc
Q psy8454 754 LIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADI 833 (936)
Q Consensus 754 ~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v 833 (936)
..+..|.||||+|+..|+.+++++|+++|+++
T Consensus 139 ------------------------------------------------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~ 170 (237)
T 3b7b_A 139 ------------------------------------------------IRDNEENICLHWAAFSGCVDIAEILLAAKCDL 170 (237)
T ss_dssp ------------------------------------------------CCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCT
T ss_pred ------------------------------------------------ccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC
Confidence 33567889999999999999999999999999
Q ss_pred ccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy8454 834 NIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK 896 (936)
Q Consensus 834 ~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~ 896 (936)
+..+ ..|.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+.+|+.+.+..|++
T Consensus 171 ~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~ 231 (237)
T 3b7b_A 171 HAVN-IHGDSPLHIAARENRYDCVVLFLSRD-SDVTLKNKEGETPLQCASLNSQVWSALQMSK 231 (237)
T ss_dssp TCCC-TTCCCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred CCcC-CCCCCHHHHHHHhCCHhHHHHHHHcC-CCCCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9998 89999999999999999999999998 9999999999999999999999976666554
No 26
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1.1e-35 Score=309.63 Aligned_cols=128 Identities=31% Similarity=0.365 Sum_probs=104.3
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHH
Q psy8454 804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAA 883 (936)
Q Consensus 804 d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~ 883 (936)
+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++.| ++++.+|..|+||||+|+
T Consensus 103 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~ 180 (231)
T 3aji_A 103 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD-HYDATAMHRAAAKGNLKMVHILLFYK-ASTNIQDTEGNTPLHLAC 180 (231)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC-CCCCcHHHHHHHcCCHHHHHHHHhcC-CCccccCCCCCCHHHHHH
Confidence 5566777777777788888888888888877777 77888888888888888888888877 788888888888888888
Q ss_pred HcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCCC
Q psy8454 884 INNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPF 933 (936)
Q Consensus 884 ~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~ 933 (936)
+.|+.+++++|+++|++++.+|..|.||+++|+..++.+++++|++++++
T Consensus 181 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~ 230 (231)
T 3aji_A 181 DEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS 230 (231)
T ss_dssp HTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence 88888888888888888888888888888888888888888888877765
No 27
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=3.8e-35 Score=305.60 Aligned_cols=227 Identities=28% Similarity=0.394 Sum_probs=210.7
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHc
Q psy8454 520 DRGFTVLHVAALYGRIKVVDLVLELGAD-TNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNN 598 (936)
Q Consensus 520 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~ 598 (936)
..+.+|||.|+..|+.+++++|++.+.. ++..+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..
T Consensus 4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 83 (231)
T 3aji_A 4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA 83 (231)
T ss_dssp CCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH
T ss_pred ccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHc
Confidence 4578999999999999999999987644 677899999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHH
Q psy8454 599 GHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNA 678 (936)
Q Consensus 599 g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~ 678 (936)
|+.+++++|++++ .+++..+..|.||||+|+..|+.+++++|++.|++++
T Consensus 84 ~~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~------------------------ 133 (231)
T 3aji_A 84 GXDEIVKALLVKG------AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD------------------------ 133 (231)
T ss_dssp TCHHHHHHHHHTT------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT------------------------
T ss_pred CHHHHHHHHHHcC------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC------------------------
Confidence 9999999999865 5788899999999999999999999999999887644
Q ss_pred hhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHH
Q psy8454 679 YVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSY 758 (936)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~L 758 (936)
T Consensus 134 -------------------------------------------------------------------------------- 133 (231)
T 3aji_A 134 -------------------------------------------------------------------------------- 133 (231)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccc
Q psy8454 759 FGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTR 838 (936)
Q Consensus 759 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~ 838 (936)
..+..|.||||+|+..|+.+++++|+++|++++..+
T Consensus 134 -------------------------------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~- 169 (231)
T 3aji_A 134 -------------------------------------------AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQD- 169 (231)
T ss_dssp -------------------------------------------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC-
T ss_pred -------------------------------------------CcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccC-
Confidence 335678899999999999999999999999999998
Q ss_pred cCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy8454 839 VKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARP 901 (936)
Q Consensus 839 ~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~ 901 (936)
..|.||||+|+..|+.+++++|+++| ++++.+|..|.||||+|++.++.+++++|+++|+++
T Consensus 170 ~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~i 231 (231)
T 3aji_A 170 TEGNTPLHLACDEERVEEAKFLVTQG-ASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEASM 231 (231)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHhhHHHHHHHHHccccccC
Confidence 89999999999999999999999998 999999999999999999999999999999998763
No 28
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=5.4e-36 Score=325.28 Aligned_cols=158 Identities=26% Similarity=0.313 Sum_probs=134.9
Q ss_pred HHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcCCHHHHHHH
Q psy8454 462 EFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLV 541 (936)
Q Consensus 462 ~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L 541 (936)
.+++.|..+.++.++............ ......+..|.||||.|+..|+.+++++|
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~t~l~~A~~~g~~~~v~~L 59 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVK------------------------RKKTKVKFDDGAVFLAACSSGDTEEVLRL 59 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCC------------------------CSCCCCEECHHHHHHHHHHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcccccccccccc------------------------CcccccccCCccHHHHHHHcCCHHHHHHH
Confidence 477888889999999887653321000 01112345688999999999999999999
Q ss_pred HhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccccccccCcc
Q psy8454 542 LELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNIN 621 (936)
Q Consensus 542 l~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~ 621 (936)
+++|++++..+..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.++|++|++++ ++++
T Consensus 60 l~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g------~~~~ 133 (299)
T 1s70_B 60 LERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQG------AHVG 133 (299)
T ss_dssp HHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT------CCTT
T ss_pred HHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC------CCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999865 5778
Q ss_pred cccCCCChHHHHHHHhCCHHHHHHHHHC
Q psy8454 622 AVNNQGDSPLHAAARWGYTSIIQLLLDH 649 (936)
Q Consensus 622 ~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ 649 (936)
..+..|.|||++|+..|+.+++++++..
T Consensus 134 ~~~~~g~t~l~~A~~~~~~~~~~~ll~~ 161 (299)
T 1s70_B 134 AVNSEGDTPLDIAEEEAMEELLQNEVNR 161 (299)
T ss_dssp CCCTTSCCHHHHCCSHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHhcchHHHHHHHHhh
Confidence 8899999999999999999999888764
No 29
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.4e-36 Score=319.26 Aligned_cols=230 Identities=29% Similarity=0.351 Sum_probs=171.9
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHhcCCC--------CCCCCCCCCcHHHHHHHhCcH-HHHHHHHhCCCCCCcCCCCC
Q psy8454 518 MDDRGFTVLHVAALYGRIKVVDLVLELGAD--------TNSQDLCGCSPLHYAATRGHQ-NVLLLLLHSGASINLTDNEG 588 (936)
Q Consensus 518 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--------~~~~~~~g~t~L~~A~~~g~~-~iv~~Ll~~g~~~~~~d~~g 588 (936)
+|.++.++|+.|+..|+.++|++|++.|++ ++..+..|.|||+.|+..++. .++++|++.|++++.+|.+|
T Consensus 7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G 86 (269)
T 4b93_B 7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDG 86 (269)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTS
T ss_pred cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCC
Confidence 677788999999999999999999998875 456677889999999988765 47899999999999999999
Q ss_pred CcHHHHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhh
Q psy8454 589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNAN 668 (936)
Q Consensus 589 ~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~ 668 (936)
.||||+|+..|+.++|++|++.+ ++++..+..|.||++.|+..++.+++++|++.|++++
T Consensus 87 ~TpLh~A~~~g~~~~v~~Ll~~~------a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n-------------- 146 (269)
T 4b93_B 87 SSPLHVAALHGRADLIPLLLKHG------ANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPN-------------- 146 (269)
T ss_dssp CCHHHHHHHTTCTTHHHHHHHTT------CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC--------------
T ss_pred CCHHHHHHHcCcHHHHHHHHhcC------CCcCccCCCCCCccccccccChHHHHHHHHHCCCCCC--------------
Confidence 99999999999999999999865 5778889999999999999999999999999887644
Q ss_pred chhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHH
Q psy8454 669 NLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIE 748 (936)
Q Consensus 669 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~ 748 (936)
T Consensus 147 -------------------------------------------------------------------------------- 146 (269)
T 4b93_B 147 -------------------------------------------------------------------------------- 146 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy8454 749 NNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLIN 828 (936)
Q Consensus 749 ~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~ 828 (936)
.+|..|.||||+||..|+.+++++|++
T Consensus 147 -----------------------------------------------------~~d~~g~TpL~~A~~~g~~~~v~~Ll~ 173 (269)
T 4b93_B 147 -----------------------------------------------------KKDLSGNTPLIYACSGGHHELVALLLQ 173 (269)
T ss_dssp -----------------------------------------------------CCCTTCCCHHHHHHHTTCGGGHHHHHH
T ss_pred -----------------------------------------------------CCCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence 346678899999999999999999999
Q ss_pred CCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCC-HHHHHHHHHcCCCCc
Q psy8454 829 YRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNH-TNLATLLLKSGARPQ 902 (936)
Q Consensus 829 ~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~-~~iv~~LL~~Ga~~~ 902 (936)
+|++++..+ ..|.||||+||..|+.++|++|+++| +|+|.+|..|+||||+|+++|+ .+++++|...|+.++
T Consensus 174 ~gadvn~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~~~ 246 (269)
T 4b93_B 174 HGASINASN-NKGNTALHEAVIEKHVFVVELLLLHG-ASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVASLD 246 (269)
T ss_dssp TTCCTTCBC-TTSCBHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCSGGGSCTTCHHHHHTTC---------
T ss_pred CCCCCCccc-cCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhchhhh
Confidence 999999988 89999999999999999999999998 9999999999999999998886 456666666666543
No 30
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.6e-36 Score=319.93 Aligned_cols=228 Identities=31% Similarity=0.420 Sum_probs=171.4
Q ss_pred CCCCCCCcHHHHHHHhCcHHHHHHHHhCCCC--------CCcCCCCCCcHHHHHHHcCcH-HHHHHHHhcccccccccCc
Q psy8454 550 SQDLCGCSPLHYAATRGHQNVLLLLLHSGAS--------INLTDNEGNTALHLATNNGHE-TCVKALIYFNEQEVLNLNI 620 (936)
Q Consensus 550 ~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~--------~~~~d~~g~t~L~~A~~~g~~-eiv~~Ll~~~~~~~~~~~~ 620 (936)
.+|..+.++|+.|+..|+.++|++|++.|++ ++..+..|.|||+.|+..++. .++++|++.| +++
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~G------adv 79 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASG------LGV 79 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CC------CCT
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCC------CCC
Confidence 3566778999999999999999999998875 355667788888888877664 4778888754 577
Q ss_pred ccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccCCCCCCCCCC
Q psy8454 621 NAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPP 700 (936)
Q Consensus 621 ~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 700 (936)
|.+|..|.||||+|++.|+.+++++|++.|++++
T Consensus 80 n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~---------------------------------------------- 113 (269)
T 4b93_B 80 NVTSQDGSSPLHVAALHGRADLIPLLLKHGANAG---------------------------------------------- 113 (269)
T ss_dssp TCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTT----------------------------------------------
T ss_pred CCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcC----------------------------------------------
Confidence 8888888888888888888888888888777644
Q ss_pred CCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcc
Q psy8454 701 SPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAK 780 (936)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~ 780 (936)
T Consensus 114 -------------------------------------------------------------------------------- 113 (269)
T 4b93_B 114 -------------------------------------------------------------------------------- 113 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHH
Q psy8454 781 CKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLL 860 (936)
Q Consensus 781 ~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~L 860 (936)
..+..|.||++.|+..++.+++++|+++|++++..+ ..|.||||+||..|+.++|++|
T Consensus 114 ---------------------~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d-~~g~TpL~~A~~~g~~~~v~~L 171 (269)
T 4b93_B 114 ---------------------ARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKD-LSGNTPLIYACSGGHHELVALL 171 (269)
T ss_dssp ---------------------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC-TTCCCHHHHHHHTTCGGGHHHH
T ss_pred ---------------------ccCCCCCCccccccccChHHHHHHHHHCCCCCCCCC-CCCCCHHHHHHHCCCHHHHHHH
Confidence 336678899999999999999999999999999998 8999999999999999999999
Q ss_pred HhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCC-HHHHHHHhhhCC
Q psy8454 861 LAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTS-LSLVRVLTHEAP 932 (936)
Q Consensus 861 L~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~-~~iv~~Ll~~~~ 932 (936)
++.| +|+|.+|..|+||||+|+..|+.++|++|+++||+++.+|..|+||||+|+++++ .+++++|...++
T Consensus 172 l~~g-advn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~ 243 (269)
T 4b93_B 172 LQHG-ASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVA 243 (269)
T ss_dssp HHTT-CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC------
T ss_pred HHCC-CCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhch
Confidence 9999 9999999999999999999999999999999999999999999999999998876 345555544443
No 31
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=7.7e-35 Score=302.57 Aligned_cols=223 Identities=27% Similarity=0.373 Sum_probs=179.1
Q ss_pred CCcHHHHHHHhCcHHHHHHHHhCCCCCCc-CCCCCCcHHHHHHHcCcHHHHHHHHhcccccccccCccc-ccCCCChHHH
Q psy8454 555 GCSPLHYAATRGHQNVLLLLLHSGASINL-TDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINA-VNNQGDSPLH 632 (936)
Q Consensus 555 g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~-~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~-~~~~g~t~L~ 632 (936)
|.||||+|+..|+.+++++|++.|.++.. .|..|.||||+|+..|+.+++++|++.++ ..+++. .+..|.||||
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~----~~~~~~~~~~~g~t~L~ 77 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME----NVNLDDYPDDSGWTPFH 77 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCT----TCCGGGCCCTTSCCHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccc----cccccccCCCCCCCHHH
Confidence 55666666666666666666666655433 56666667777766667777777766542 133444 6677888888
Q ss_pred HHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccc
Q psy8454 633 AAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDY 712 (936)
Q Consensus 633 ~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (936)
+|+..|+.+++++|++.|...+
T Consensus 78 ~A~~~~~~~~~~~Ll~~g~~~~---------------------------------------------------------- 99 (228)
T 2dzn_A 78 IACSVGNLEVVKSLYDRPLKPD---------------------------------------------------------- 99 (228)
T ss_dssp HHHHHCCHHHHHHHHSSSSCCC----------------------------------------------------------
T ss_pred HHHHcCCHHHHHHHHhCCCCcc----------------------------------------------------------
Confidence 8888888888888887763221
Q ss_pred cccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCcc
Q psy8454 713 SDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRP 792 (936)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 792 (936)
T Consensus 100 -------------------------------------------------------------------------------- 99 (228)
T 2dzn_A 100 -------------------------------------------------------------------------------- 99 (228)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCC
Q psy8454 793 VTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQD 872 (936)
Q Consensus 793 l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d 872 (936)
++..+..|.||||.|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++.|.++++.+|
T Consensus 100 -------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d 171 (228)
T 2dzn_A 100 -------LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKD-KFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQD 171 (228)
T ss_dssp -------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCC-TTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCC
T ss_pred -------cccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccC-CCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcC
Confidence 34457778999999999999999999999999999998 8999999999999999999999999989999999
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHH-HcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhh
Q psy8454 873 YRGNTALHYAAINNHTNLATLLL-KSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHE 930 (936)
Q Consensus 873 ~~g~TpL~~A~~~g~~~iv~~LL-~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~ 930 (936)
..|+||||+|+..|+.+++++|+ ++|++++.+|..|+||+++|++. +++++|+++
T Consensus 172 ~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~~ 227 (228)
T 2dzn_A 172 KQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNN 227 (228)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHTT
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHhc
Confidence 99999999999999999999999 89999999999999999999764 678888764
No 32
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=2.6e-34 Score=300.89 Aligned_cols=125 Identities=30% Similarity=0.505 Sum_probs=65.5
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCC-HHHHHHHHhcCCCCCCCCCC-CCCcHHHHHH
Q psy8454 806 DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNN-LSIVRLLLAAKQCNVNAQDY-RGNTALHYAA 883 (936)
Q Consensus 806 ~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~-~~iv~~LL~~g~~dvn~~d~-~g~TpL~~A~ 883 (936)
.|.||||.|+..|+.+++++|+++|++++..+ ..|.||||+|+..++ .+++++|++.| ++++..+. .|.||||+|+
T Consensus 108 ~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~~L~~~~-~~~~~~~~~~g~t~L~~A~ 185 (240)
T 3eu9_A 108 EGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMD-QNGMTPLMWAAYRTHSVDPTRLLLTFN-VSVNLGDKYHKNTALHWAV 185 (240)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHHCCSSTTHHHHHHTT-CCTTCCCTTTCCCHHHHHH
T ss_pred CCCCHHHHHHHcCHHHHHHHHHhcCCCccccC-CCCCcHHHHHHHhCChHHHHHHHHhcC-CCcchhhccCCCcHHHHHH
Confidence 34445555555555555555555555555444 455555555553333 45555555554 55555554 5555555555
Q ss_pred HcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCC
Q psy8454 884 INNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAP 932 (936)
Q Consensus 884 ~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~ 932 (936)
..|+.+++++|+++|++++.+|..|.|||++|++.|+.+++++|+++++
T Consensus 186 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~ 234 (240)
T 3eu9_A 186 LAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQ 234 (240)
T ss_dssp HHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhh
Confidence 5555555555555555555555555555555555555555555555443
No 33
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=2.2e-35 Score=317.55 Aligned_cols=242 Identities=21% Similarity=0.276 Sum_probs=210.1
Q ss_pred ccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHH
Q psy8454 516 QSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLA 595 (936)
Q Consensus 516 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A 595 (936)
+.+|..|.||||+|+..|+.+++++|+++|++++..+ |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus 25 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A 102 (285)
T 3kea_A 25 FKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYA 102 (285)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHH
Confidence 3478889999999999999999999999999999884 89999999999999999999999999999999999999999
Q ss_pred HHcCcHHHHHHHHhcccccccccCcccccCCC-ChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHH
Q psy8454 596 TNNGHETCVKALIYFNEQEVLNLNINAVNNQG-DSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAK 674 (936)
Q Consensus 596 ~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g-~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ 674 (936)
+..|+.+++++|+++| ++++..+..| .||||+|+..|+.+++++|+++|++...
T Consensus 103 ~~~g~~~~v~~Ll~~g------a~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------------------- 157 (285)
T 3kea_A 103 VDSGNMQTVKLFVKKN------WRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD------------------- 157 (285)
T ss_dssp HHTTCHHHHHHHHHHC------GGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC-------------------
T ss_pred HHcCCHHHHHHHHhcC------CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc-------------------
Confidence 9999999999999865 5678889999 7999999999999999999998764310
Q ss_pred HHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHH
Q psy8454 675 LLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKL 754 (936)
Q Consensus 675 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~ 754 (936)
T Consensus 158 -------------------------------------------------------------------------------- 157 (285)
T 3kea_A 158 -------------------------------------------------------------------------------- 157 (285)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcc
Q psy8454 755 IKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834 (936)
Q Consensus 755 vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~ 834 (936)
...|.||||+|+..|+.+++++|+++|++++
T Consensus 158 -------------------------------------------------~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n 188 (285)
T 3kea_A 158 -------------------------------------------------LAILLSCIHITIKNGHVDMMILLLDYMTSTN 188 (285)
T ss_dssp -------------------------------------------------CSTHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred -------------------------------------------------ccCCccHHHHHHHcChHHHHHHHHHcCCCCC
Confidence 1267899999999999999999999999999
Q ss_pred cccccCCCcH-HHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHH
Q psy8454 835 IVTRVKQLTP-LHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLH 913 (936)
Q Consensus 835 ~~~~~~g~Tp-Lh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~ 913 (936)
..+ ..|.|| ||+|+..|+.+++++|+++| ++++.+| +.|+..|+.++|++|+++|++++..+. .+.+.
T Consensus 189 ~~~-~~g~t~~L~~A~~~~~~~~v~~Ll~~g-ad~~~~~-------~~a~~~~~~~iv~~Ll~~g~~~~~~~~--~~~~~ 257 (285)
T 3kea_A 189 TNN-SLLFIPDIKLAIDNKDIEMLQALFKYD-INIYSAN-------LENVLLDDAEIAKMIIEKHVEYKSDSY--TKDLD 257 (285)
T ss_dssp TTC-CCBCCTTHHHHHHHTCHHHHHHHTTSC-BCSTTTT-------GGGGTTTCHHHHHHHHHHHHHHTTCTT--TTTCH
T ss_pred ccc-CCCCChHHHHHHHcCCHHHHHHHHHcC-CCCCCCC-------hhhhhcCCHHHHHHHHHcCCCCCCccc--cchHH
Confidence 998 888887 99999999999999999998 9999988 367889999999999999998776543 33455
Q ss_pred HHHHcCCHHHH
Q psy8454 914 MAQQMTSLSLV 924 (936)
Q Consensus 914 ~A~~~g~~~iv 924 (936)
.+......+++
T Consensus 258 ~~~~~~~~~ii 268 (285)
T 3kea_A 258 IVKNNKLDEII 268 (285)
T ss_dssp HHHTCSHHHHH
T ss_pred HHhhhhHHHHH
Confidence 55444444443
No 34
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=3e-34 Score=300.37 Aligned_cols=233 Identities=27% Similarity=0.394 Sum_probs=208.2
Q ss_pred cCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCC-CCCCcHHHHH
Q psy8454 517 SMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTD-NEGNTALHLA 595 (936)
Q Consensus 517 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d-~~g~t~L~~A 595 (936)
..|..|.|+|+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|
T Consensus 4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A 83 (240)
T 3eu9_A 4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWA 83 (240)
T ss_dssp CCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHH
T ss_pred ccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHH
Confidence 367789999999999999999999999999999999999999999999999999999999999988655 4499999999
Q ss_pred HHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHH
Q psy8454 596 TNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKL 675 (936)
Q Consensus 596 ~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~l 675 (936)
+..|+.+++++|++++ .+++..+..|.|||+.|++.|+.+++++|+++|++++.
T Consensus 84 ~~~~~~~~v~~Ll~~g------~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~-------------------- 137 (240)
T 3eu9_A 84 TRQGHLSMVVQLMKYG------ADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDM-------------------- 137 (240)
T ss_dssp HHHTCHHHHHHHHHTT------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--------------------
T ss_pred HHcCCHHHHHHHHHcC------CCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccc--------------------
Confidence 9999999999999865 56788899999999999999999999999998776443
Q ss_pred HHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHH
Q psy8454 676 LNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLI 755 (936)
Q Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~v 755 (936)
T Consensus 138 -------------------------------------------------------------------------------- 137 (240)
T 3eu9_A 138 -------------------------------------------------------------------------------- 137 (240)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCC-HHHHHHHHhCCCCcc
Q psy8454 756 KSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGH-YDLVRLLINYRADIN 834 (936)
Q Consensus 756 k~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~-~~~v~~LL~~g~~v~ 834 (936)
.+..|.||||.|+..++ .+++++|++.|++++
T Consensus 138 -----------------------------------------------~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~ 170 (240)
T 3eu9_A 138 -----------------------------------------------MDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVN 170 (240)
T ss_dssp -----------------------------------------------CCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTT
T ss_pred -----------------------------------------------cCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcc
Confidence 35667788888886665 899999999999999
Q ss_pred cccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcC
Q psy8454 835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQI 903 (936)
Q Consensus 835 ~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~ 903 (936)
..+...|.||||+|+..|+.+++++|+++| ++++.+|..|.||||+|++.|+.+++++|+++|++...
T Consensus 171 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~ 238 (240)
T 3eu9_A 171 LGDKYHKNTALHWAVLAGNTTVISLLLEAG-ANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGY 238 (240)
T ss_dssp CCCTTTCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC-----
T ss_pred hhhccCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccCc
Confidence 998559999999999999999999999998 99999999999999999999999999999999987543
No 35
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=4e-35 Score=315.46 Aligned_cols=233 Identities=18% Similarity=0.214 Sum_probs=206.7
Q ss_pred CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccc
Q psy8454 534 RIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQ 613 (936)
Q Consensus 534 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~ 613 (936)
..++.++|.+. +++.+|..|.||||+|+..|+.+++++|++.|++++..+ |.||||+|+..|+.+++++|+++|
T Consensus 12 ~~~v~~lL~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~g-- 85 (285)
T 3kea_A 12 SKQLKSFLSSK--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSG-- 85 (285)
T ss_dssp HHHHHHHHHST--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTT--
T ss_pred HHHHHHHHHhC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCC--
Confidence 34555666554 578899999999999999999999999999999988874 899999999999999999999865
Q ss_pred cccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccCCC
Q psy8454 614 EVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPK 693 (936)
Q Consensus 614 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~ 693 (936)
++++.++..|.||||+|+..|+.+++++|+++|+++
T Consensus 86 ----a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~---------------------------------------- 121 (285)
T 3kea_A 86 ----LDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL---------------------------------------- 121 (285)
T ss_dssp ----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGG----------------------------------------
T ss_pred ----CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC----------------------------------------
Confidence 578889999999999999999999999999877653
Q ss_pred CCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCc
Q psy8454 694 EKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACH 773 (936)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~ 773 (936)
T Consensus 122 -------------------------------------------------------------------------------- 121 (285)
T 3kea_A 122 -------------------------------------------------------------------------------- 121 (285)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhcccchhhhhccCccccccCCCcccCCCCC-CcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCC
Q psy8454 774 PLCQCAKCKEDVVESESRPVTDECLNINICNSDG-YTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNN 852 (936)
Q Consensus 774 ~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g-~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g 852 (936)
+..+..| .||||+|+..|+.+++++|+++|+++... ..|.||||+|+..|
T Consensus 122 ---------------------------~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~--~~g~t~L~~A~~~g 172 (285)
T 3kea_A 122 ---------------------------MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL--AILLSCIHITIKNG 172 (285)
T ss_dssp ---------------------------GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC--STHHHHHHHHHHTT
T ss_pred ---------------------------CccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc--cCCccHHHHHHHcC
Confidence 4446677 79999999999999999999999887322 38899999999999
Q ss_pred CHHHHHHHHhcCCCCCCCCCCCCCcH-HHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhC
Q psy8454 853 NLSIVRLLLAAKQCNVNAQDYRGNTA-LHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEA 931 (936)
Q Consensus 853 ~~~iv~~LL~~g~~dvn~~d~~g~Tp-L~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~ 931 (936)
+.+++++|+++| +++|.+|..|+|| ||+|++.|+.+++++|+++|++++.+|. .|+..|+.+++++|+++|
T Consensus 173 ~~~~v~~Ll~~g-ad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~~g 244 (285)
T 3kea_A 173 HVDMMILLLDYM-TSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDAEIAKMIIEKH 244 (285)
T ss_dssp CHHHHHHHHHHH-HHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHcC-CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHHHHHHHcC
Confidence 999999999998 9999999999998 9999999999999999999999999883 668899999999999987
Q ss_pred CC
Q psy8454 932 PF 933 (936)
Q Consensus 932 ~~ 933 (936)
..
T Consensus 245 ~~ 246 (285)
T 3kea_A 245 VE 246 (285)
T ss_dssp HH
T ss_pred CC
Confidence 54
No 36
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=3.4e-34 Score=308.03 Aligned_cols=254 Identities=22% Similarity=0.196 Sum_probs=191.7
Q ss_pred hcccCCChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHH
Q psy8454 450 NYKKISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVA 529 (936)
Q Consensus 450 ~~~~~~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A 529 (936)
+..+..+.|+|+.|++.|+.++|++|++.+.+.. .++.++..|.||||+|
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~------------------------------~~~~~~~~g~t~L~~A 52 (282)
T 1oy3_D 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHE------------------------------YLDLQNDLGQTALHLA 52 (282)
T ss_dssp CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSG------------------------------GGGCCCTTSCCHHHHH
T ss_pred CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc------------------------------cccccCCCCCCHHHHH
Confidence 4556788999999999999999999999987632 1334778899999999
Q ss_pred HHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcC-------------CCCCCcHHHHHH
Q psy8454 530 ALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLT-------------DNEGNTALHLAT 596 (936)
Q Consensus 530 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~-------------d~~g~t~L~~A~ 596 (936)
+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|++.|++.... ...+.++++.++
T Consensus 53 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (282)
T 1oy3_D 53 AILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDS 132 (282)
T ss_dssp HHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC------------------------
T ss_pred HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhcc
Confidence 9999999999999999999999999999999999999999999999999775422 234556666666
Q ss_pred HcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHH
Q psy8454 597 NNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLL 676 (936)
Q Consensus 597 ~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll 676 (936)
..+....+..++. ..+.+++..+..|.||||+|++.|+.+++++|+++|++++..+
T Consensus 133 ~~~~~~~~~~~~~-----~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~------------------- 188 (282)
T 1oy3_D 133 QPNPENEEEPRDE-----DWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPE------------------- 188 (282)
T ss_dssp -----------CC-----CGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCC-------------------
T ss_pred ccccchhhhhhhh-----hhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCC-------------------
Confidence 6554443333332 2345678889999999999999999999999999887755321
Q ss_pred HHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHH
Q psy8454 677 NAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIK 756 (936)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk 756 (936)
T Consensus 189 -------------------------------------------------------------------------------- 188 (282)
T 1oy3_D 189 -------------------------------------------------------------------------------- 188 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccc
Q psy8454 757 SYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIV 836 (936)
Q Consensus 757 ~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~ 836 (936)
+..|.||||+|+..|+.+++++|+++|++++.+
T Consensus 189 -----------------------------------------------~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~ 221 (282)
T 1oy3_D 189 -----------------------------------------------PTCGRTPLHLAVEAQAASVLELLLKAGADPTAR 221 (282)
T ss_dssp -----------------------------------------------TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred -----------------------------------------------CCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccc
Confidence 234889999999999999999999999999999
Q ss_pred cccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcC
Q psy8454 837 TRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINN 886 (936)
Q Consensus 837 ~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g 886 (936)
+ ..|.||||+|+..|+.+++++|+++| ++++.+|..|.|||++|....
T Consensus 222 d-~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~a~~~~ 269 (282)
T 1oy3_D 222 M-YGGRTPLGSALLRPNPILARLLRAHG-APEPEDGGDKLSPCSSSGSDS 269 (282)
T ss_dssp C-TTSCCHHHHHHTSSCHHHHHHHHHTT-CCCCCCC--------------
T ss_pred c-cCCCCHHHHHHHcCCcHHHHHHHHcC-CCcCcCCCcccccccccCCcc
Confidence 9 89999999999999999999999999 999999999999999998765
No 37
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=4.9e-34 Score=295.45 Aligned_cols=127 Identities=30% Similarity=0.311 Sum_probs=68.5
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHH
Q psy8454 804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAA 883 (936)
Q Consensus 804 d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~ 883 (936)
+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+
T Consensus 89 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~ 166 (223)
T 2f8y_A 89 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVD-DLGKSALHWAAAVNNVDAAVVLLKNG-ANKDMQNNREETPLFLAA 166 (223)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBC-TTSCBHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHH
T ss_pred CCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcC-CCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCcCHHHHHH
Confidence 3344455555555555555555555555555544 45555555555555555555555554 555555555555555555
Q ss_pred HcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCC
Q psy8454 884 INNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAP 932 (936)
Q Consensus 884 ~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~ 932 (936)
+.|+.+++++|+++|++++.+|..|.||+++|++.|+.+++++|++.|.
T Consensus 167 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~ 215 (223)
T 2f8y_A 167 REGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNL 215 (223)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCC
Confidence 5555555555555555555555555555555555555555555555544
No 38
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=6.6e-34 Score=294.46 Aligned_cols=217 Identities=24% Similarity=0.303 Sum_probs=198.6
Q ss_pred cCCHHHHHHHHhcCCCCCCC-CCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhc
Q psy8454 532 YGRIKVVDLVLELGADTNSQ-DLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYF 610 (936)
Q Consensus 532 ~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~ 610 (936)
.|+.+++++|+++|++++.. |..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|++.
T Consensus 1 gg~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 80 (223)
T 2f8y_A 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 80 (223)
T ss_dssp ----CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHB
T ss_pred CCcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 37888999999999999875 88999999999999999999999999999999999999999999999999999999986
Q ss_pred ccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCcccccc
Q psy8454 611 NEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYL 690 (936)
Q Consensus 611 ~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~ 690 (936)
++ .+++..+..|.||||+|+..|+.+++++|+++|++++
T Consensus 81 ~~-----~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~------------------------------------ 119 (223)
T 2f8y_A 81 RA-----TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN------------------------------------ 119 (223)
T ss_dssp TT-----SCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT------------------------------------
T ss_pred CC-----CCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCc------------------------------------
Confidence 53 3678889999999999999999999999999887644
Q ss_pred CCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCC
Q psy8454 691 VPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDN 770 (936)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~ 770 (936)
T Consensus 120 -------------------------------------------------------------------------------- 119 (223)
T 2f8y_A 120 -------------------------------------------------------------------------------- 119 (223)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHh
Q psy8454 771 ACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQ 850 (936)
Q Consensus 771 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~ 850 (936)
..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+.
T Consensus 120 -------------------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~ 167 (223)
T 2f8y_A 120 -------------------------------AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN-NREETPLFLAAR 167 (223)
T ss_dssp -------------------------------CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTCCCHHHHHHH
T ss_pred -------------------------------CcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcC-CCCcCHHHHHHH
Confidence 336678899999999999999999999999999998 899999999999
Q ss_pred CCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc
Q psy8454 851 NNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQ 902 (936)
Q Consensus 851 ~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~ 902 (936)
.|+.+++++|+++| ++++.+|..|.||||+|++.|+.+++++|+++|+...
T Consensus 168 ~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~ 218 (223)
T 2f8y_A 168 EGSYETAKVLLDHF-ANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218 (223)
T ss_dssp HTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred cCCHHHHHHHHHcC-CCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence 99999999999999 9999999999999999999999999999999999643
No 39
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.4e-33 Score=293.15 Aligned_cols=219 Identities=24% Similarity=0.296 Sum_probs=197.9
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCCC-CCCCCCcHHHHHHHhCcHHHHHHHHhCC--CCCCc-CCCCCCcHHHHHHH
Q psy8454 522 GFTVLHVAALYGRIKVVDLVLELGADTNS-QDLCGCSPLHYAATRGHQNVLLLLLHSG--ASINL-TDNEGNTALHLATN 597 (936)
Q Consensus 522 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~g~~~iv~~Ll~~g--~~~~~-~d~~g~t~L~~A~~ 597 (936)
|.||||+|+..|+.+++++|++.|.++.. .+..|.||||+|+..|+.+++++|++.| ++++. .+..|.||||+|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 68999999999999999999999988764 8899999999999999999999999999 55555 78999999999999
Q ss_pred cCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHH
Q psy8454 598 NGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLN 677 (936)
Q Consensus 598 ~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~ 677 (936)
.|+.+++++|++++ .+.+++..+..|.||||.|++.|+.+++++|+++|++++.
T Consensus 82 ~~~~~~~~~Ll~~g----~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~---------------------- 135 (228)
T 2dzn_A 82 VGNLEVVKSLYDRP----LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI---------------------- 135 (228)
T ss_dssp HCCHHHHHHHHSSS----SCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCC----------------------
T ss_pred cCCHHHHHHHHhCC----CCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccc----------------------
Confidence 99999999999875 2357888999999999999999999999999998876543
Q ss_pred HhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHH
Q psy8454 678 AYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKS 757 (936)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~ 757 (936)
T Consensus 136 -------------------------------------------------------------------------------- 135 (228)
T 2dzn_A 136 -------------------------------------------------------------------------------- 135 (228)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCC-CCcccc
Q psy8454 758 YFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYR-ADINIV 836 (936)
Q Consensus 758 Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g-~~v~~~ 836 (936)
.+..|.||||+|+..|+.+++++|+++| ++++..
T Consensus 136 ---------------------------------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 170 (228)
T 2dzn_A 136 ---------------------------------------------KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQ 170 (228)
T ss_dssp ---------------------------------------------CCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCC
T ss_pred ---------------------------------------------cCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCc
Confidence 3667889999999999999999999999 999998
Q ss_pred cccCCCcHHHHHHhCCCHHHHHHHH-hcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy8454 837 TRVKQLTPLHIACQNNNLSIVRLLL-AAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK 896 (936)
Q Consensus 837 ~~~~g~TpLh~A~~~g~~~iv~~LL-~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~ 896 (936)
+ ..|.||||+|+..|+.+++++|+ +.| ++++.+|..|+||||+|++. +++++|++
T Consensus 171 d-~~g~t~L~~A~~~~~~~~v~~Ll~~~g-a~~~~~~~~g~t~l~~A~~~---~~~~~l~~ 226 (228)
T 2dzn_A 171 D-KQGWTPLFHALAEGHGDAAVLLVEKYG-AEYDLVDNKGAKAEDVALNE---QVKKFFLN 226 (228)
T ss_dssp C-TTSCCHHHHHHHTTCHHHHHHHHHHHC-CCSCCBCTTSCBGGGGCSST---THHHHHHT
T ss_pred C-CCCCCHHHHHHHcCCHHHHHHHHHhcC-CCCCccCCCCCcHHHHHHHH---HHHHHHHh
Confidence 8 89999999999999999999999 777 99999999999999999765 57777765
No 40
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=9.9e-35 Score=318.90 Aligned_cols=257 Identities=17% Similarity=0.153 Sum_probs=197.2
Q ss_pred cCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCC-----------------CCCCcHHHH
Q psy8454 532 YGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTD-----------------NEGNTALHL 594 (936)
Q Consensus 532 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d-----------------~~g~t~L~~ 594 (936)
..+.+++++|+++|++++..+..|.|+++ |+.+++++|+++|++++... ....+.+|.
T Consensus 29 ~~~~dlv~~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 103 (327)
T 1sw6_A 29 TFTHDLTSDFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHV 103 (327)
T ss_dssp ECCTTCCCSTTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------
T ss_pred hhcCchHHHHhhCCcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHH
Confidence 46667899999999999999999999977 88999999999998765411 111233577
Q ss_pred HHHcCcHHHHHHHHhcccccccccCccc-ccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHH
Q psy8454 595 ATNNGHETCVKALIYFNEQEVLNLNINA-VNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVA 673 (936)
Q Consensus 595 A~~~g~~eiv~~Ll~~~~~~~~~~~~~~-~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~ 673 (936)
|+..+..+++++|++.+ +++|. .+..|.||||+|++.|+.++|++|+++|++++.+|..|.||||+|+..+..
T Consensus 104 a~~~~~~~~~~~l~~~g------~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~ 177 (327)
T 1sw6_A 104 SFDSLLQEVNDAFPNTQ------LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNN 177 (327)
T ss_dssp CHHHHHHHHHHHCTTSC------CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHH
T ss_pred HHHhhHHHHHHHHHhcC------CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhccc
Confidence 88888889999998754 67888 899999999999999999999999999999999999999999998764330
Q ss_pred HHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHH
Q psy8454 674 KLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIK 753 (936)
Q Consensus 674 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~ 753 (936)
. +.+
T Consensus 178 ~----------------------------------------------------------------------------~~~ 181 (327)
T 1sw6_A 178 Y----------------------------------------------------------------------------DSG 181 (327)
T ss_dssp H----------------------------------------------------------------------------HTT
T ss_pred c----------------------------------------------------------------------------cHH
Confidence 0 011
Q ss_pred HHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHH----cCCHHHHHHHHhC
Q psy8454 754 LIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATS----LGHYDLVRLLINY 829 (936)
Q Consensus 754 ~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~----~g~~~~v~~LL~~ 829 (936)
+++.|++. ...+++..+..|.||||+|+. .|+.+++++|++.
T Consensus 182 ~~~~ll~~----------------------------------~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~ 227 (327)
T 1sw6_A 182 TFEALLDY----------------------------------LYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDI 227 (327)
T ss_dssp CHHHHHHH----------------------------------HGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHh----------------------------------hhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHH
Confidence 11111110 012368889999999999999 8999999999987
Q ss_pred --------------------CCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHH
Q psy8454 830 --------------------RADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTN 889 (936)
Q Consensus 830 --------------------g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~ 889 (936)
|++++..+ ..|.||||+|+. +++|+++ ++|.+|..|+||||+|++.|+.+
T Consensus 228 ~~~~~~~~~~~~i~~~~~~~g~~~~~~~-~~g~t~L~~a~~------~~~Ll~~---~~n~~d~~G~TpLh~A~~~g~~~ 297 (327)
T 1sw6_A 228 LMGWIVKKQNRPIQSGTNEKESKPNDKN-GERKDSILENLD------LKWIIAN---MLNAQDSNGDTCLNIAARLGNIS 297 (327)
T ss_dssp HHHHHHHGGGCCEEEC-----------------CHHHHHCS------HHHHHHH---TTTCCCTTSCCHHHHHHHHCCHH
T ss_pred HHHHHhcccchHHHhhhhcccCCccccc-ccCCChhHHHHH------HHHHHHh---CCCCCCCCCCCHHHHHHHcCCHH
Confidence 89999998 899999999985 9999997 68999999999999999999999
Q ss_pred HHHHHHHcCCCCcCcccCCCcHHHHHHHcC
Q psy8454 890 LATLLLKSGARPQIKNHYGQTCLHMAQQMT 919 (936)
Q Consensus 890 iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g 919 (936)
+|++|+++||+++.+|..|+||||+|+++|
T Consensus 298 ~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 298 IVDALLDYGADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred HHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence 999999999999999999999999998765
No 41
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1.3e-32 Score=298.53 Aligned_cols=123 Identities=25% Similarity=0.380 Sum_probs=115.8
Q ss_pred CChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcCC
Q psy8454 455 SSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGR 534 (936)
Q Consensus 455 ~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~ 534 (936)
.+.++|+.|+..|+.++|++|++.+.+.+ ..+..|.||||+|+..|+
T Consensus 39 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~---------------------------------~~~~~g~t~L~~A~~~g~ 85 (299)
T 1s70_B 39 DDGAVFLAACSSGDTEEVLRLLERGADIN---------------------------------YANVDGLTALHQACIDDN 85 (299)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHCCCTT---------------------------------CBCTTCCBHHHHHHHTTC
T ss_pred CCccHHHHHHHcCCHHHHHHHHHcCCCCc---------------------------------ccCCCCCCHHHHHHHcCC
Confidence 45789999999999999999999986543 367789999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhc
Q psy8454 535 IKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYF 610 (936)
Q Consensus 535 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~ 610 (936)
.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++++..
T Consensus 86 ~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~ 161 (299)
T 1s70_B 86 VDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNR 161 (299)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999974
No 42
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.98 E-value=3.1e-33 Score=292.18 Aligned_cols=118 Identities=25% Similarity=0.321 Sum_probs=106.2
Q ss_pred ccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHH
Q psy8454 801 NICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALH 880 (936)
Q Consensus 801 n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~ 880 (936)
+..+..|.||||+|+..|+.+++++|+++|++++..+...|.||||+|+..|+.+++++|+++| ++++.+|..|+||||
T Consensus 111 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~ 189 (236)
T 1ikn_D 111 KATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG-ADVNRVTYQGYSPYQ 189 (236)
T ss_dssp GCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTT-CCSCCCCTTCCCGGG
T ss_pred hccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcccCCCCCHHH
Confidence 5567889999999999999999999999999999998449999999999999999999999998 999999999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCCCc--CcccCCCcHHHHHHHcC
Q psy8454 881 YAAINNHTNLATLLLKSGARPQ--IKNHYGQTCLHMAQQMT 919 (936)
Q Consensus 881 ~A~~~g~~~iv~~LL~~Ga~~~--~~d~~g~T~L~~A~~~g 919 (936)
+|+..|+.+++++|+++|++.. ..+..|.||.+.+....
T Consensus 190 ~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~ 230 (236)
T 1ikn_D 190 LTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFT 230 (236)
T ss_dssp GCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC----
T ss_pred HHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhcccc
Confidence 9999999999999999999876 78889999887776544
No 43
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.98 E-value=1.5e-31 Score=278.70 Aligned_cols=214 Identities=23% Similarity=0.223 Sum_probs=169.0
Q ss_pred CCCcHHHHHHHhCcHHHHHHHHhC-CCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHH
Q psy8454 554 CGCSPLHYAATRGHQNVLLLLLHS-GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLH 632 (936)
Q Consensus 554 ~g~t~L~~A~~~g~~~iv~~Ll~~-g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~ 632 (936)
.|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|++.++... ....+..+..|.||||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~~~~~~g~t~L~ 80 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV-FEPMTSELYEGQTALH 80 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGG-GCCCCSTTTTTCCHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhc-cccccccCCCCcCHHH
Confidence 467788888888888888888776 78888888888888888888888888888887664311 1223667788999999
Q ss_pred HHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccc
Q psy8454 633 AAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDY 712 (936)
Q Consensus 633 ~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (936)
+|+..|+.+++++|+++|++++..+... .+
T Consensus 81 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~--~~------------------------------------------------ 110 (232)
T 2rfa_A 81 IAVINQNVNLVRALLARGASVSARATGS--VF------------------------------------------------ 110 (232)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCCSG--GG------------------------------------------------
T ss_pred HHHHcCCHHHHHHHHhCCCCCCcccCCc--ce------------------------------------------------
Confidence 9999999999999999999887654211 00
Q ss_pred cccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCcc
Q psy8454 713 SDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRP 792 (936)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 792 (936)
T Consensus 111 -------------------------------------------------------------------------------- 110 (232)
T 2rfa_A 111 -------------------------------------------------------------------------------- 110 (232)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHH----HHHHhcCCCCC
Q psy8454 793 VTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIV----RLLLAAKQCNV 868 (936)
Q Consensus 793 l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv----~~LL~~g~~dv 868 (936)
....+..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++ ++|++.| +++
T Consensus 111 ----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d-~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g-~~~ 184 (232)
T 2rfa_A 111 ----HYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQD-SLGNTVLHILILQPNKTFACQMYNLLLSYD-GGD 184 (232)
T ss_dssp ----SCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHTCSCHHHHHHHHHHHHHTT-CSC
T ss_pred ----eecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCCHHHHHHHcCChHHHHHHHHHHHhcC-Cch
Confidence 00134557789999999999999999999999999999888 8899999999999999888 8999988 776
Q ss_pred ------CCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCc
Q psy8454 869 ------NAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIK 904 (936)
Q Consensus 869 ------n~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~ 904 (936)
+.+|..|+||||+|++.|+.++|++|+++|++....
T Consensus 185 ~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~~~~ 226 (232)
T 2rfa_A 185 HLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAA 226 (232)
T ss_dssp SSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred hhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccchhh
Confidence 588889999999999999999999999988765543
No 44
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.97 E-value=2.3e-31 Score=277.18 Aligned_cols=200 Identities=25% Similarity=0.317 Sum_probs=179.8
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhh
Q psy8454 587 EGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQN 666 (936)
Q Consensus 587 ~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~ 666 (936)
.|.||||.|+..|+.+++++|++. .+.+++.++..|.||||+|+..|+.+++++|++.|+++...
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~-----~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~---------- 66 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKF-----EGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFE---------- 66 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTT-----TCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGC----------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHh-----cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccc----------
Confidence 588999999999999999999985 24678899999999999999999999999999987653210
Q ss_pred hhchhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHH
Q psy8454 667 ANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFAL 746 (936)
Q Consensus 667 a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 746 (936)
T Consensus 67 -------------------------------------------------------------------------------- 66 (232)
T 2rfa_A 67 -------------------------------------------------------------------------------- 66 (232)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHH
Q psy8454 747 IENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLL 826 (936)
Q Consensus 747 i~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~L 826 (936)
..+..+..|.||||+|+..|+.+++++|
T Consensus 67 ----------------------------------------------------~~~~~~~~g~t~L~~A~~~~~~~~v~~L 94 (232)
T 2rfa_A 67 ----------------------------------------------------PMTSELYEGQTALHIAVINQNVNLVRAL 94 (232)
T ss_dssp ----------------------------------------------------CCCSTTTTTCCHHHHHHHTTCHHHHHHH
T ss_pred ----------------------------------------------------cccccCCCCcCHHHHHHHcCCHHHHHHH
Confidence 0245577899999999999999999999
Q ss_pred HhCCCCcccccc------------cCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHH---
Q psy8454 827 INYRADINIVTR------------VKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLA--- 891 (936)
Q Consensus 827 L~~g~~v~~~~~------------~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv--- 891 (936)
+++|++++..+. ..|.||||+|+..|+.+++++|+++| +++|.+|..|+||||+|+..|+.+++
T Consensus 95 l~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~t~L~~A~~~~~~~~~~~i 173 (232)
T 2rfa_A 95 LARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHG-ADIRAQDSLGNTVLHILILQPNKTFACQM 173 (232)
T ss_dssp HHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHTCSCHHHHHHH
T ss_pred HhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCChHHHHHH
Confidence 999999998762 26999999999999999999999998 99999999999999999999999988
Q ss_pred -HHHHHcCCCC------cCcccCCCcHHHHHHHcCCHHHHHHHhhhCCCc
Q psy8454 892 -TLLLKSGARP------QIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPFV 934 (936)
Q Consensus 892 -~~LL~~Ga~~------~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~~ 934 (936)
++|+++|+++ +.+|..|+||||+|++.|+.+++++|+++++..
T Consensus 174 ~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~ 223 (232)
T 2rfa_A 174 YNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHI 223 (232)
T ss_dssp HHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence 9999999998 589999999999999999999999999987643
No 45
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.97 E-value=1.4e-32 Score=287.27 Aligned_cols=220 Identities=27% Similarity=0.323 Sum_probs=192.0
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHhcCC----CCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHH
Q psy8454 518 MDDRGFTVLHVAALYGRIKVVDLVLELGA----DTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALH 593 (936)
Q Consensus 518 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~----~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~ 593 (936)
+|.+|.||||+|+..|+.+++++|++.+. +++.++..|.||||+|+..|+.+++++|++.|++++.+|..|.||||
T Consensus 4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 83 (236)
T 1ikn_D 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLH 83 (236)
T ss_dssp ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHH
T ss_pred CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence 67889999999999999999999998765 78999999999999999999999999999999999999999999999
Q ss_pred HHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHH
Q psy8454 594 LATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVA 673 (936)
Q Consensus 594 ~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~ 673 (936)
+|+..|+.+++++|++.+........++..+..|.||||+|+..|+.+++++|+++|++++.
T Consensus 84 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------------------ 145 (236)
T 1ikn_D 84 LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNA------------------ 145 (236)
T ss_dssp HHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTC------------------
T ss_pred HHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC------------------
Confidence 99999999999999998764433445688899999999999999999999999998877553
Q ss_pred HHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHH
Q psy8454 674 KLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIK 753 (936)
Q Consensus 674 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~ 753 (936)
T Consensus 146 -------------------------------------------------------------------------------- 145 (236)
T 1ikn_D 146 -------------------------------------------------------------------------------- 145 (236)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCC-CCCcHHHHHHHcCCHHHHHHHHhCCCC
Q psy8454 754 LIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNS-DGYTALHIATSLGHYDLVRLLINYRAD 832 (936)
Q Consensus 754 ~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~-~g~t~L~~Aa~~g~~~~v~~LL~~g~~ 832 (936)
.+. .|.||||+|+..|+.+++++|+++|++
T Consensus 146 -------------------------------------------------~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 176 (236)
T 1ikn_D 146 -------------------------------------------------QEPCNGRTALHLAVDLQNPDLVSLLLKCGAD 176 (236)
T ss_dssp -------------------------------------------------CCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC
T ss_pred -------------------------------------------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 244 788999999999999999999999999
Q ss_pred cccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCC--CCCCCCCcHHHHHHHcC
Q psy8454 833 INIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVN--AQDYRGNTALHYAAINN 886 (936)
Q Consensus 833 v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn--~~d~~g~TpL~~A~~~g 886 (936)
++..+ ..|.||||+|+..|+.+++++|+++| ++.. ..+..|.||.+.+....
T Consensus 177 ~~~~~-~~g~tpl~~A~~~~~~~~~~~Ll~~g-a~~~~~~~~~~~~~~~~~~~~~~ 230 (236)
T 1ikn_D 177 VNRVT-YQGYSPYQLTWGRPSTRIQQQLGQLT-LENLQMLPESEDEESYDTESEFT 230 (236)
T ss_dssp SCCCC-TTCCCGGGGCTTSSCHHHHHHHHTTS-CGGGSSCCCCCTTTCCCCC----
T ss_pred CCccc-CCCCCHHHHHHccCchHHHHHHHHcc-hhhhhcCCccchHHHHhhhcccc
Confidence 99998 89999999999999999999999999 7665 77888888877665443
No 46
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=3.8e-30 Score=261.45 Aligned_cols=193 Identities=24% Similarity=0.299 Sum_probs=163.5
Q ss_pred CCCCcHHHHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhh
Q psy8454 586 NEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQ 665 (936)
Q Consensus 586 ~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~ 665 (936)
..+.||||.|+..|+.++++.|+..+ +.+++..+..|.||||+|++.|+.+++++|+++|++++.
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~-----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~---------- 67 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDT-----TYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL---------- 67 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCT-----TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC----------
T ss_pred cccccHHHHHHHhccHHHHHHHHHcC-----CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC----------
Confidence 45678888888888888888888754 236777788888888888888888888888887776443
Q ss_pred hhhchhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHH
Q psy8454 666 NANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFA 745 (936)
Q Consensus 666 ~a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 745 (936)
T Consensus 68 -------------------------------------------------------------------------------- 67 (201)
T 3hra_A 68 -------------------------------------------------------------------------------- 67 (201)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHH
Q psy8454 746 LIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRL 825 (936)
Q Consensus 746 ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~ 825 (936)
.+..|.||||+|+..|+.+++++
T Consensus 68 ---------------------------------------------------------~~~~g~t~l~~A~~~~~~~~~~~ 90 (201)
T 3hra_A 68 ---------------------------------------------------------QNSISDSPYLYAGAQGRTEILAY 90 (201)
T ss_dssp ---------------------------------------------------------CCTTSCCHHHHHHHTTCHHHHHH
T ss_pred ---------------------------------------------------------CCCCCCCHHHHHHHcCCHHHHHH
Confidence 35567788888888999999999
Q ss_pred HH-hCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCC-----HHHHHHHHHcCC
Q psy8454 826 LI-NYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNH-----TNLATLLLKSGA 899 (936)
Q Consensus 826 LL-~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~-----~~iv~~LL~~Ga 899 (936)
|+ ..+++++..+ ..|.||||+|+..|+.+++++|++.|.++++.+|..|+||||+|+..|+ .+++++|+++|+
T Consensus 91 Ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga 169 (201)
T 3hra_A 91 MLKHATPDLNKHN-RYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGA 169 (201)
T ss_dssp HHHHSCCCTTCCC-TTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTC
T ss_pred HHhccCccccccc-CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCC
Confidence 99 6677888887 7889999999999999999999999888999999999999999999888 899999999999
Q ss_pred CCcCcccCCCcHHHHHHHcCCHHHHHHHhhhC
Q psy8454 900 RPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEA 931 (936)
Q Consensus 900 ~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~ 931 (936)
+++.+|..|.||||+|++.|+.+++++|++.|
T Consensus 170 ~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 170 DQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred CCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 99999999999999999999999999998875
No 47
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=1.2e-30 Score=255.79 Aligned_cols=158 Identities=33% Similarity=0.492 Sum_probs=148.3
Q ss_pred HHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCH
Q psy8454 741 EQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHY 820 (936)
Q Consensus 741 ~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~ 820 (936)
+.|+.|++.|+.++|++|++ .|+++|.+|..|.||||+|+..|+.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~-----------------------------------~Gadvn~~d~~g~t~l~~a~~~~~~ 50 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIE-----------------------------------NGADVNASDSDGRTPLHHAAENGHK 50 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHH-----------------------------------TTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHH-----------------------------------CCCCCCCcCCCCCCHHHHHHHcCCH
Confidence 46999999999999999986 4567899999999999999999999
Q ss_pred HHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy8454 821 DLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGAR 900 (936)
Q Consensus 821 ~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~ 900 (936)
+++++|+++|++++..+ ..|.||||+||..|+.++|++|++.| +|+|.+|..|+||||+|++.|+.++|++|+++|++
T Consensus 51 ~~~~~ll~~gad~~~~d-~~g~TpLh~A~~~g~~~~v~~Ll~~g-advn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad 128 (169)
T 4gpm_A 51 EVVKLLISKGADVNAKD-SDGRTPLHHAAENGHKEVVKLLISKG-ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD 128 (169)
T ss_dssp HHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHHHHHHhcccchhhhc-cCCCCHHHHHHHcCCHHHHHHHHHCc-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999999999999999 89999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CcCcccCCCcHHHHHHHcCCHHHHHHHhhhCCCcC
Q psy8454 901 PQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPFVL 935 (936)
Q Consensus 901 ~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~~~ 935 (936)
++.+|..|+|||++|++.|+.+++++|+++|+++.
T Consensus 129 ~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie 163 (169)
T 4gpm_A 129 VNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163 (169)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-----
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence 99999999999999999999999999999999863
No 48
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=4e-31 Score=282.81 Aligned_cols=230 Identities=18% Similarity=0.208 Sum_probs=159.1
Q ss_pred CCCCCCCCCcHHHHHHHhCcHHHHHHHHh----CCCCCC----cCCCCCCcHHHHHHHc---CcHHHHHHHHhcccccc-
Q psy8454 548 TNSQDLCGCSPLHYAATRGHQNVLLLLLH----SGASIN----LTDNEGNTALHLATNN---GHETCVKALIYFNEQEV- 615 (936)
Q Consensus 548 ~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~----~g~~~~----~~d~~g~t~L~~A~~~---g~~eiv~~Ll~~~~~~~- 615 (936)
.+..|..|.||||+|+..|+.++|+.|++ .+++++ ..|..|.||||+|+.. |+.++|++|+++++...
T Consensus 6 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~ 85 (273)
T 2pnn_A 6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS 85 (273)
T ss_dssp -----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC
T ss_pred CCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc
Confidence 33444555555555555555555444443 344443 2355566666666654 56666666665543211
Q ss_pred ----cccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccC
Q psy8454 616 ----LNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLV 691 (936)
Q Consensus 616 ----~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~ 691 (936)
........+..|.||||+|++.|+.+++++|+++|++++..+..+...
T Consensus 86 ~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~---------------------------- 137 (273)
T 2pnn_A 86 LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFK---------------------------- 137 (273)
T ss_dssp HHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGS----------------------------
T ss_pred hhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccc----------------------------
Confidence 112234467789999999999999999999999999988776432000
Q ss_pred CCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCC
Q psy8454 692 PKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNA 771 (936)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~ 771 (936)
T Consensus 138 -------------------------------------------------------------------------------- 137 (273)
T 2pnn_A 138 -------------------------------------------------------------------------------- 137 (273)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHh---CCCCcccccccCCCcHHHHH
Q psy8454 772 CHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLIN---YRADINIVTRVKQLTPLHIA 848 (936)
Q Consensus 772 ~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~---~g~~v~~~~~~~g~TpLh~A 848 (936)
..+.+..+..|.||||+|+..|+.+++++|++ +|++++.++ ..|+||||+|
T Consensus 138 -------------------------~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d-~~g~tpLh~A 191 (273)
T 2pnn_A 138 -------------------------KTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARD-SVGNTVLHAL 191 (273)
T ss_dssp -------------------------SCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCC-TTSCCHHHHH
T ss_pred -------------------------cccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeC-CCCCcHHHHH
Confidence 00124456789999999999999999999999 999999999 8999999999
Q ss_pred HhCCC---------HHHHHHHHhcCCCCCC-------CCCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCcCcccCCCcH
Q psy8454 849 CQNNN---------LSIVRLLLAAKQCNVN-------AQDYRGNTALHYAAINNHTNLATLLLKSGA-RPQIKNHYGQTC 911 (936)
Q Consensus 849 ~~~g~---------~~iv~~LL~~g~~dvn-------~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga-~~~~~d~~g~T~ 911 (936)
+..|+ .+++++|++.| +++| .+|..|+||||+|++.|+.++|++|+++|| |+......+.+|
T Consensus 192 ~~~~~~~~~~~~~~~~~v~~Ll~~g-a~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~ 270 (273)
T 2pnn_A 192 VEVADNTVDNTKFVTSMYNEILILG-AKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHH 270 (273)
T ss_dssp HHHCCSCHHHHHHHHHHHHHHHHHH-HHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC------------
T ss_pred HHccCcchhHHHHHHHHHHHHHHhh-hhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhc
Confidence 99988 89999999998 8887 489999999999999999999999999999 888777776665
Q ss_pred H
Q psy8454 912 L 912 (936)
Q Consensus 912 L 912 (936)
-
T Consensus 271 ~ 271 (273)
T 2pnn_A 271 H 271 (273)
T ss_dssp -
T ss_pred c
Confidence 3
No 49
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.97 E-value=6.9e-33 Score=304.22 Aligned_cols=283 Identities=17% Similarity=0.091 Sum_probs=195.6
Q ss_pred hhHHHhhhhhccc------CCChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCC
Q psy8454 441 QLKVYNKYNNYKK------ISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPT 514 (936)
Q Consensus 441 ~~~~~~~l~~~~~------~~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (936)
..+++++|++.+. ..+.++++ |+.++|+.||+.|.++... ++..+.. ..+...
T Consensus 31 ~~dlv~~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~-------~~~~a~~---------~~~~~~ 89 (327)
T 1sw6_A 31 THDLTSDFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQ-------EMPTSLN---------NDSSNR 89 (327)
T ss_dssp CTTCCCSTTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC---------------------------------
T ss_pred cCchHHHHhhCCcccccCCCCCCcccC-----chhHHHHHHHHhccCCccc-------cchHhhh---------cccccc
Confidence 3456777877763 23445443 9999999999998774331 0000000 000000
Q ss_pred cccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCC-CCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHH
Q psy8454 515 TQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNS-QDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALH 593 (936)
Q Consensus 515 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~ 593 (936)
...+.....+.+|+|+..+..+++++|++.|+++|. +|..|+||||+|+..|+.++|++|+++|++++.+|..|.||||
T Consensus 90 ~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh 169 (327)
T 1sw6_A 90 NSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLV 169 (327)
T ss_dssp --------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHH
T ss_pred cccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence 011222233446888888899999999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHcCc---HHHHHHHHhcccccccccCcccccCCCChHHHHHHH----hCCHHHHHHHHHCCCCCCCcccCCCChhhh
Q psy8454 594 LATNNGH---ETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAAR----WGYTSIIQLLLDHGANPTLENKRKVTPLQN 666 (936)
Q Consensus 594 ~A~~~g~---~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~----~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~ 666 (936)
+|+..|+ .++++.|++++. .+++..+..|.||||+|++ .|+.+++++|++.++.....
T Consensus 170 ~A~~~g~~~~~~~~~~ll~~~~-----~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~---------- 234 (327)
T 1sw6_A 170 KAVKSVNNYDSGTFEALLDYLY-----PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVK---------- 234 (327)
T ss_dssp HHHHSSHHHHTTCHHHHHHHHG-----GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHhcccccHHHHHHHHHhhh-----ccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhc----------
Confidence 9999998 678888887652 3578899999999999999 89999999999864321100
Q ss_pred hhchhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHH
Q psy8454 667 ANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFAL 746 (936)
Q Consensus 667 a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 746 (936)
..
T Consensus 235 ------------~~------------------------------------------------------------------ 236 (327)
T 1sw6_A 235 ------------KQ------------------------------------------------------------------ 236 (327)
T ss_dssp ------------GG------------------------------------------------------------------
T ss_pred ------------cc------------------------------------------------------------------
Confidence 00
Q ss_pred HHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHH
Q psy8454 747 IENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLL 826 (936)
Q Consensus 747 i~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~L 826 (936)
...+...+...|++++..+..|.||||.|+. +++|
T Consensus 237 ---------------------------------------~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~L 271 (327)
T 1sw6_A 237 ---------------------------------------NRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWI 271 (327)
T ss_dssp ---------------------------------------GCCEEEC----------------CHHHHHCS------HHHH
T ss_pred ---------------------------------------chHHHhhhhcccCCcccccccCCChhHHHHH------HHHH
Confidence 0000012334578899999999999999985 8999
Q ss_pred HhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcC
Q psy8454 827 INYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINN 886 (936)
Q Consensus 827 L~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g 886 (936)
+++ +++.++ ..|+||||+||..|+.++|++|+++| +|++.+|..|+||||+|+++|
T Consensus 272 l~~--~~n~~d-~~G~TpLh~A~~~g~~~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 272 IAN--MLNAQD-SNGDTCLNIAARLGNISIVDALLDYG-ADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp HHH--TTTCCC-TTSCCHHHHHHHHCCHHHHHHHHHTT-CCTTCCCTTSCCGGGGTCC--
T ss_pred HHh--CCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHhcC
Confidence 998 577788 89999999999999999999999998 999999999999999998765
No 50
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=4.5e-31 Score=282.35 Aligned_cols=217 Identities=24% Similarity=0.273 Sum_probs=179.6
Q ss_pred CCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccccccccCcc----cccCCCChHHHHHHHh---CCHHHHHHHHHC
Q psy8454 577 SGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNIN----AVNNQGDSPLHAAARW---GYTSIIQLLLDH 649 (936)
Q Consensus 577 ~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~----~~~~~g~t~L~~A~~~---g~~~iv~~Ll~~ 649 (936)
.++..+..|..|.||||.|+..|+.++|+.|++++.. .+.+++ ..+..|.||||+|+.. |+.+++++|++.
T Consensus 2 ~~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ 79 (273)
T 2pnn_A 2 VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQR--SKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV 79 (273)
T ss_dssp ---------CCCHHHHHHHHHTTCSSTTTTHHHHHHH--SCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH
T ss_pred CcccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhh--cccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHh
Confidence 3566677889999999999999999999999986532 223333 3578999999999987 999999999998
Q ss_pred CCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCC
Q psy8454 650 GANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGV 729 (936)
Q Consensus 650 ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (936)
|++....
T Consensus 80 ga~~~~~------------------------------------------------------------------------- 86 (273)
T 2pnn_A 80 ARKTDSL------------------------------------------------------------------------- 86 (273)
T ss_dssp HHHTTCH-------------------------------------------------------------------------
T ss_pred hccccch-------------------------------------------------------------------------
Confidence 8754321
Q ss_pred CCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCc
Q psy8454 730 RPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYT 809 (936)
Q Consensus 730 ~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t 809 (936)
+.+++ ..+...|..|.|
T Consensus 87 --------------------------~~~i~-------------------------------------~~~~~~d~~g~t 103 (273)
T 2pnn_A 87 --------------------------KQFVN-------------------------------------ASYTDSYYKGQT 103 (273)
T ss_dssp --------------------------HHHHT-------------------------------------CCCCSTTTTTCC
T ss_pred --------------------------hHHhh-------------------------------------cccccccCCCCC
Confidence 00000 012334678999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCcccccc-------------cCCCcHHHHHHhCCCHHHHHHHHh---cCCCCCCCCCC
Q psy8454 810 ALHIATSLGHYDLVRLLINYRADINIVTR-------------VKQLTPLHIACQNNNLSIVRLLLA---AKQCNVNAQDY 873 (936)
Q Consensus 810 ~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~-------------~~g~TpLh~A~~~g~~~iv~~LL~---~g~~dvn~~d~ 873 (936)
|||+|+..|+.+++++|+++|++++..+. ..|.||||+|+..|+.++|++|++ .| +++|.+|.
T Consensus 104 pL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g-ad~~~~d~ 182 (273)
T 2pnn_A 104 ALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQP-ADISARDS 182 (273)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCC-CCTTCCCT
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCC-CCceeeCC
Confidence 99999999999999999999999999883 179999999999999999999999 77 99999999
Q ss_pred CCCcHHHHHHHcCC---------HHHHHHHHHcCCCCc-------CcccCCCcHHHHHHHcCCHHHHHHHhhhCC
Q psy8454 874 RGNTALHYAAINNH---------TNLATLLLKSGARPQ-------IKNHYGQTCLHMAQQMTSLSLVRVLTHEAP 932 (936)
Q Consensus 874 ~g~TpL~~A~~~g~---------~~iv~~LL~~Ga~~~-------~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~ 932 (936)
.|+||||+|++.|+ .+++++|+++|++++ .+|..|+||||+|++.|+.+++++|+++|+
T Consensus 183 ~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga 257 (273)
T 2pnn_A 183 VGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREI 257 (273)
T ss_dssp TSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCC
Confidence 99999999999998 899999999999997 489999999999999999999999999987
No 51
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=1.1e-30 Score=276.36 Aligned_cols=211 Identities=21% Similarity=0.256 Sum_probs=140.9
Q ss_pred CCcHHHHHHHhCcHH----HHHHHHhCCCCCCc----CCCCCCcHHHHHHHc---CcHHHHHHHHhcccccc-----ccc
Q psy8454 555 GCSPLHYAATRGHQN----VLLLLLHSGASINL----TDNEGNTALHLATNN---GHETCVKALIYFNEQEV-----LNL 618 (936)
Q Consensus 555 g~t~L~~A~~~g~~~----iv~~Ll~~g~~~~~----~d~~g~t~L~~A~~~---g~~eiv~~Ll~~~~~~~-----~~~ 618 (936)
|+||||.|+..|+.+ ++++|++.|++++. .|..|.||||+|+.. |+.++|++|++.++... ...
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~ 81 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA 81 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence 445555555555554 33444445555555 455555555555555 55555555555443211 111
Q ss_pred CcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccCCCCCCCC
Q psy8454 619 NINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSR 698 (936)
Q Consensus 619 ~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 698 (936)
.....|..|.||||+|+..|+.+++++|+++|++++..+..+.++
T Consensus 82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~----------------------------------- 126 (256)
T 2etb_A 82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQ----------------------------------- 126 (256)
T ss_dssp CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGS-----------------------------------
T ss_pred ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccccccc-----------------------------------
Confidence 233456789999999999999999999999999988765432110
Q ss_pred CCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchh
Q psy8454 699 PPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQC 778 (936)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~ 778 (936)
T Consensus 127 -------------------------------------------------------------------------------- 126 (256)
T 2etb_A 127 -------------------------------------------------------------------------------- 126 (256)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHh---CCCCcccccccCCCcHHHHHHh--CCC
Q psy8454 779 AKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLIN---YRADINIVTRVKQLTPLHIACQ--NNN 853 (936)
Q Consensus 779 ~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~---~g~~v~~~~~~~g~TpLh~A~~--~g~ 853 (936)
.+.+..+..|.||||+|+..|+.+++++|++ +|++++..+ ..|+||||+|+. .++
T Consensus 127 -------------------~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d-~~g~TpLh~A~~~~~~~ 186 (256)
T 2etb_A 127 -------------------KHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATD-SLGNTVLHALVMIADNS 186 (256)
T ss_dssp -------------------CCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCC-TTSCCHHHHHHHHCCSC
T ss_pred -------------------ccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccC-CCCCCHHHHHHHcccCC
Confidence 0123335567888888888888888888888 788877777 777788888777 677
Q ss_pred HH-------HHHHHHhcCCCCC-------CCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy8454 854 LS-------IVRLLLAAKQCNV-------NAQDYRGNTALHYAAINNHTNLATLLLKSGARP 901 (936)
Q Consensus 854 ~~-------iv~~LL~~g~~dv-------n~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~ 901 (936)
.+ ++++|+++| +++ +.+|..|+||||+|++.|+.++|++|+++|++.
T Consensus 187 ~~~~~~~~~iv~~Ll~~g-a~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~ 247 (256)
T 2etb_A 187 PENSALVIHMYDGLLQMG-ARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSG 247 (256)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHcC-CCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence 77 777777777 777 677777777777777777777777777776643
No 52
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=8.1e-31 Score=277.54 Aligned_cols=204 Identities=25% Similarity=0.267 Sum_probs=177.1
Q ss_pred CCCcHHHHHHHcCcHH----HHHHHHhcccccccccCccc----ccCCCChHHHHHHHh---CCHHHHHHHHHCCCCCCC
Q psy8454 587 EGNTALHLATNNGHET----CVKALIYFNEQEVLNLNINA----VNNQGDSPLHAAARW---GYTSIIQLLLDHGANPTL 655 (936)
Q Consensus 587 ~g~t~L~~A~~~g~~e----iv~~Ll~~~~~~~~~~~~~~----~~~~g~t~L~~A~~~---g~~~iv~~Ll~~ga~~~~ 655 (936)
.|.||||.|+..|+.+ ++++|++.+ .+++. .+..|.||||+|+.. |+.+++++|++.|++++.
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g------~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~ 74 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNS------KYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGN 74 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHT------CCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTC
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcC------CCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccc
Confidence 3789999999999997 556666544 57777 799999999999999 999999999998877653
Q ss_pred cccCCCChhhhhhchhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchh
Q psy8454 656 ENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNIT 735 (936)
Q Consensus 656 ~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (936)
.+. + .
T Consensus 75 ~~~-----~---------------~------------------------------------------------------- 79 (256)
T 2etb_A 75 PKP-----L---------------V------------------------------------------------------- 79 (256)
T ss_dssp SSC-----G---------------G-------------------------------------------------------
T ss_pred hhh-----h---------------c-------------------------------------------------------
Confidence 220 0 0
Q ss_pred hhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHH
Q psy8454 736 EIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIAT 815 (936)
Q Consensus 736 ~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa 815 (936)
.......|..|.||||+|+
T Consensus 80 -------------------------------------------------------------~~~~~~~d~~g~t~L~~A~ 98 (256)
T 2etb_A 80 -------------------------------------------------------------NAQCTDEFYQGHSALHIAI 98 (256)
T ss_dssp -------------------------------------------------------------GCCCCSTTTTTCCHHHHHH
T ss_pred -------------------------------------------------------------ccccccccccCCCHHHHHH
Confidence 0012334678999999999
Q ss_pred HcCCHHHHHHHHhCCCCccccccc------------CCCcHHHHHHhCCCHHHHHHHHh---cCCCCCCCCCCCCCcHHH
Q psy8454 816 SLGHYDLVRLLINYRADINIVTRV------------KQLTPLHIACQNNNLSIVRLLLA---AKQCNVNAQDYRGNTALH 880 (936)
Q Consensus 816 ~~g~~~~v~~LL~~g~~v~~~~~~------------~g~TpLh~A~~~g~~~iv~~LL~---~g~~dvn~~d~~g~TpL~ 880 (936)
..|+.+++++|+++|++++..+.. .|.||||+|+..|+.+++++|++ .| +++|.+|..|+||||
T Consensus 99 ~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~g-a~~n~~d~~g~TpLh 177 (256)
T 2etb_A 99 EKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQP-ASLEATDSLGNTVLH 177 (256)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC-CCTTCCCTTSCCHHH
T ss_pred HcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC-CCcCccCCCCCCHHH
Confidence 999999999999999999998832 29999999999999999999999 77 999999999999999
Q ss_pred HHHH--cCCHH-------HHHHHHHcCCCC-------cCcccCCCcHHHHHHHcCCHHHHHHHhhhCCC
Q psy8454 881 YAAI--NNHTN-------LATLLLKSGARP-------QIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPF 933 (936)
Q Consensus 881 ~A~~--~g~~~-------iv~~LL~~Ga~~-------~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~ 933 (936)
+|+. .++.+ ++++|+++|+++ +.+|..|+||||+|++.|+.+++++|+++|+.
T Consensus 178 ~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~ 246 (256)
T 2etb_A 178 ALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFS 246 (256)
T ss_dssp HHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC
Confidence 9999 88998 999999999999 99999999999999999999999999998764
No 53
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=2.5e-29 Score=255.40 Aligned_cols=95 Identities=29% Similarity=0.336 Sum_probs=72.0
Q ss_pred cCCCCCCcHHHHHHHcCCHHHHHHHHhCC-CCcccccccCCCcHHHHHHhCCC-----HHHHHHHHhcCCCCCCCCCCCC
Q psy8454 802 ICNSDGYTALHIATSLGHYDLVRLLINYR-ADINIVTRVKQLTPLHIACQNNN-----LSIVRLLLAAKQCNVNAQDYRG 875 (936)
Q Consensus 802 ~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g-~~v~~~~~~~g~TpLh~A~~~g~-----~~iv~~LL~~g~~dvn~~d~~g 875 (936)
..+..|.||||+|+..|+.+++++|+++| ++++..+ ..|.||||+|+..|+ .+++++|+++| ++++.+|..|
T Consensus 101 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~g-a~~~~~~~~g 178 (201)
T 3hra_A 101 KHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQN-DFGYTALIEAVGLREGNQLYQDIVKLLMENG-ADQSIKDNSG 178 (201)
T ss_dssp CCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCC-TTSCCHHHHHHHSSCCSHHHHHHHHHHHHTT-CCTTCCCTTS
T ss_pred cccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCC-CCCCCHHHHHHHhccchhhHHHHHHHHHHCC-CCCCccCCCC
Confidence 33556667777777777777777777777 6777776 677777777777776 77888888877 7888888888
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcC
Q psy8454 876 NTALHYAAINNHTNLATLLLKSG 898 (936)
Q Consensus 876 ~TpL~~A~~~g~~~iv~~LL~~G 898 (936)
+||||+|++.|+.+++++|+++|
T Consensus 179 ~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 179 RTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp CCHHHHHHHHTCHHHHHHHHTCC
T ss_pred CCHHHHHHHcCCHhHHHHHHhcC
Confidence 88888888888888888888766
No 54
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.96 E-value=9.2e-29 Score=242.35 Aligned_cols=159 Identities=36% Similarity=0.568 Sum_probs=146.1
Q ss_pred HHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcCCHHH
Q psy8454 458 TKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKV 537 (936)
Q Consensus 458 ~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~ 537 (936)
++|+.|+++|+.++|+.||+.|++.+ .+|..|.||||+|+..|+.++
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn---------------------------------~~d~~g~t~l~~a~~~~~~~~ 52 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVN---------------------------------ASDSDGRTPLHHAAENGHKEV 52 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTT---------------------------------CCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCC---------------------------------CcCCCCCCHHHHHHHcCCHHH
Confidence 47999999999999999999987643 378899999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccccccc
Q psy8454 538 VDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLN 617 (936)
Q Consensus 538 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~ 617 (936)
+++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++|++|+++|
T Consensus 53 ~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~g------ 126 (169)
T 4gpm_A 53 VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKG------ 126 (169)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT------
T ss_pred HHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred cCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCC
Q psy8454 618 LNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTL 655 (936)
Q Consensus 618 ~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~ 655 (936)
++++.+|..|.|||++|++.|+.+++++|+++|++++.
T Consensus 127 ad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 127 ADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEH 164 (169)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred CCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence 67899999999999999999999999999999998764
No 55
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=9.2e-30 Score=270.06 Aligned_cols=133 Identities=29% Similarity=0.313 Sum_probs=124.7
Q ss_pred cccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccc-------------cCCCcHHHHHHhCCCHHHHHHHHh---c
Q psy8454 800 INICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTR-------------VKQLTPLHIACQNNNLSIVRLLLA---A 863 (936)
Q Consensus 800 ~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~-------------~~g~TpLh~A~~~g~~~iv~~LL~---~ 863 (936)
++..|..|.||||+||..|+.+++++|+++|++++..+. ..|.||||+|+..|+.++|++|++ .
T Consensus 86 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ 165 (260)
T 3jxi_A 86 FRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHK 165 (260)
T ss_dssp BCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred ccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence 355577899999999999999999999999999999884 479999999999999999999999 7
Q ss_pred CCCCCCCCCCCCCcHHHHHHHcCC---------HHHHHHHHHcCCCC-------cCcccCCCcHHHHHHHcCCHHHHHHH
Q psy8454 864 KQCNVNAQDYRGNTALHYAAINNH---------TNLATLLLKSGARP-------QIKNHYGQTCLHMAQQMTSLSLVRVL 927 (936)
Q Consensus 864 g~~dvn~~d~~g~TpL~~A~~~g~---------~~iv~~LL~~Ga~~-------~~~d~~g~T~L~~A~~~g~~~iv~~L 927 (936)
| +++|.+|..|+||||+|+..|+ .+++++|+++|+++ +.+|..|+||||+|++.|+.+++++|
T Consensus 166 g-a~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~L 244 (260)
T 3jxi_A 166 Q-ADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHI 244 (260)
T ss_dssp C-CCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred C-CCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHH
Confidence 7 9999999999999999999888 79999999999999 77999999999999999999999999
Q ss_pred hhhCCC
Q psy8454 928 THEAPF 933 (936)
Q Consensus 928 l~~~~~ 933 (936)
+++|+.
T Consensus 245 l~~g~~ 250 (260)
T 3jxi_A 245 IRREIA 250 (260)
T ss_dssp HHHHHH
T ss_pred HHhCCC
Confidence 999864
No 56
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=3.7e-29 Score=265.43 Aligned_cols=214 Identities=19% Similarity=0.218 Sum_probs=164.3
Q ss_pred CCCcHHHHHHHhCcHHH----HHHHHhCCCCCCcCC----CCCCcHHHHHH---HcCcHHHHHHHHhcccccc-----cc
Q psy8454 554 CGCSPLHYAATRGHQNV----LLLLLHSGASINLTD----NEGNTALHLAT---NNGHETCVKALIYFNEQEV-----LN 617 (936)
Q Consensus 554 ~g~t~L~~A~~~g~~~i----v~~Ll~~g~~~~~~d----~~g~t~L~~A~---~~g~~eiv~~Ll~~~~~~~-----~~ 617 (936)
.++|+||.|++.|+.+. +++|++.|++++..+ ..|.||||+|+ ..|+.+++++|++.++... ..
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 83 (260)
T 3jxi_A 4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFIN 83 (260)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHT
T ss_pred chHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhc
Confidence 45556666666666553 333334666665444 45666666666 4566666666666553211 12
Q ss_pred cCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccCCCCCCC
Q psy8454 618 LNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVS 697 (936)
Q Consensus 618 ~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 697 (936)
..++..+..|.||||+|+..|+.+++++|+++|++++..+..+..
T Consensus 84 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~----------------------------------- 128 (260)
T 3jxi_A 84 SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFF----------------------------------- 128 (260)
T ss_dssp CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCC-----------------------------------
T ss_pred ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcccccccc-----------------------------------
Confidence 445666779999999999999999999999999998876542100
Q ss_pred CCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccch
Q psy8454 698 RPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQ 777 (936)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~ 777 (936)
T Consensus 129 -------------------------------------------------------------------------------- 128 (260)
T 3jxi_A 129 -------------------------------------------------------------------------------- 128 (260)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHh---CCCCcccccccCCCcHHHHHHhCCC-
Q psy8454 778 CAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLIN---YRADINIVTRVKQLTPLHIACQNNN- 853 (936)
Q Consensus 778 ~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~---~g~~v~~~~~~~g~TpLh~A~~~g~- 853 (936)
...+.+..+..|.||||+|+..|+.+++++|++ +|++++.++ ..|+||||+|+..|+
T Consensus 129 ------------------~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d-~~g~TpLh~A~~~~~~ 189 (260)
T 3jxi_A 129 ------------------QPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQD-SRGNTVLHALVAIADN 189 (260)
T ss_dssp ------------------SSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCC-TTSCCHHHHHHHHCCS
T ss_pred ------------------CcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccC-CCCCcHHHHHHHhccC
Confidence 001123446789999999999999999999999 999999999 899999999999888
Q ss_pred --------HHHHHHHHhcCCCCC-------CCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc
Q psy8454 854 --------LSIVRLLLAAKQCNV-------NAQDYRGNTALHYAAINNHTNLATLLLKSGARPQ 902 (936)
Q Consensus 854 --------~~iv~~LL~~g~~dv-------n~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~ 902 (936)
.+++++|+++| +++ +.+|..|+||||+|++.|+.++|++|+++|++..
T Consensus 190 ~~~~~~~~~~~v~~Ll~~g-a~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~ 252 (260)
T 3jxi_A 190 TRENTKFVTKMYDLLLIKC-AKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA 252 (260)
T ss_dssp SHHHHHHHHHHHHHHHHHH-HHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhC-cccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCcc
Confidence 79999999999 888 7799999999999999999999999999987654
No 57
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.95 E-value=2.1e-28 Score=261.54 Aligned_cols=192 Identities=22% Similarity=0.309 Sum_probs=166.7
Q ss_pred CcHHHHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCC-CCCCcccCCCChhhhh
Q psy8454 589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGA-NPTLENKRKVTPLQNA 667 (936)
Q Consensus 589 ~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga-~~~~~d~~g~t~l~~a 667 (936)
.+++|.|+..|+.+.++.++..+. ...+|..|..|.||||+|++.|+.+++++|++.|+ +++..+..
T Consensus 77 ~~~l~~a~~~~~~~~~~~l~~~~~----~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~-------- 144 (276)
T 4hbd_A 77 RSDAHPELVRRHLVTFRAMSARLL----DYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRA-------- 144 (276)
T ss_dssp STTCCHHHHHHHHHHHHHHCHHHH----HHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTT--------
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHH----hhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCC--------
Confidence 567889999999999999987652 23478899999999999999999999999999987 65555444
Q ss_pred hchhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHH
Q psy8454 668 NNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALI 747 (936)
Q Consensus 668 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai 747 (936)
T Consensus 145 -------------------------------------------------------------------------------- 144 (276)
T 4hbd_A 145 -------------------------------------------------------------------------------- 144 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHH-----HcCCHHH
Q psy8454 748 ENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIAT-----SLGHYDL 822 (936)
Q Consensus 748 ~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa-----~~g~~~~ 822 (936)
|.||||+|+ ..++.++
T Consensus 145 -----------------------------------------------------------g~tpL~~a~~~~~~~~~~~~~ 165 (276)
T 4hbd_A 145 -----------------------------------------------------------GYSPIMLTALATLKTQDDIET 165 (276)
T ss_dssp -----------------------------------------------------------SCCHHHHGGGCCCCSHHHHHH
T ss_pred -----------------------------------------------------------CCCHHHHHHHHHhhhhhhHHH
Confidence 455555555 4578899
Q ss_pred HHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCC
Q psy8454 823 VRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK-SGARP 901 (936)
Q Consensus 823 v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~-~Ga~~ 901 (936)
+++|++.|..++..+ ..|.||||+|+..|+.++|++|++.| +|+|.+|..|+||||+|+..|+.++|++|++ +|+++
T Consensus 166 v~~Ll~~g~~~~~~~-~~g~tpLh~A~~~g~~~~v~~Ll~~g-ad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~ 243 (276)
T 4hbd_A 166 VLQLFRLGNINAKAS-QAGQTALMLAVSHGRVDVVKALLACE-ADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDI 243 (276)
T ss_dssp HHHHHHHSCTTCCCT-TTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCT
T ss_pred HHHHHHcCCCccccC-CCCCCHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCC
Confidence 999999998888777 78999999999999999999999998 9999999999999999999999999999998 89999
Q ss_pred cCcccCCCcHHHHHHHcCCHHHHHHHhhhCCC
Q psy8454 902 QIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPF 933 (936)
Q Consensus 902 ~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~ 933 (936)
+.+|..|.||||+|+..|+.+++++|+++...
T Consensus 244 ~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~i 275 (276)
T 4hbd_A 244 SLTDRDGSTALMVALDAGQSEIASMLYSRMNI 275 (276)
T ss_dssp TCCCTTSCCHHHHHHHHTCHHHHHHHHHHCCC
T ss_pred cCcCCCCCCHHHHHHHcCCHHHHHHHHhccCC
Confidence 99999999999999999999999999988653
No 58
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.95 E-value=1.4e-27 Score=240.61 Aligned_cols=129 Identities=21% Similarity=0.236 Sum_probs=122.7
Q ss_pred ccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHH
Q psy8454 801 NICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALH 880 (936)
Q Consensus 801 n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~ 880 (936)
+..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++| ++++.+|..|.||||
T Consensus 62 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~ 139 (192)
T 2rfm_A 62 EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKD-FSGKTPLMWSIIFGYSEMSYFLLEHG-ANVNDRNLEGETPLI 139 (192)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHHTT-CCSSCCCTTCCCHHH
T ss_pred ccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHH
Confidence 3346678899999999999999999999999999998 89999999999999999999999998 999999999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhC
Q psy8454 881 YAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEA 931 (936)
Q Consensus 881 ~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~ 931 (936)
+|+..|+.+++++|+++|++++.+|..|.||+++|+..|+.+++++|++++
T Consensus 140 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 140 VASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVR 190 (192)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999875
No 59
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.95 E-value=6e-27 Score=230.61 Aligned_cols=162 Identities=27% Similarity=0.432 Sum_probs=149.7
Q ss_pred chhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHH
Q psy8454 733 NITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALH 812 (936)
Q Consensus 733 ~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~ 812 (936)
........++++.|+..|+.+++++|++. |++++..+..|.||||
T Consensus 8 ~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~-----------------------------------g~~~~~~~~~g~t~L~ 52 (169)
T 2y1l_E 8 HHHGSDLGKKLLEAARAGRDDEVRILMAN-----------------------------------GADVNAEDASGWTPLH 52 (169)
T ss_dssp -----CHHHHHHHHHHHTCHHHHHHHHHT-----------------------------------TCCTTCCCTTSCCHHH
T ss_pred ccCCCcccchHHHHHHcCCHHHHHHHHHC-----------------------------------CCCCCCCCCCCCCHHH
Confidence 34455677899999999999999999964 4557888999999999
Q ss_pred HHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHH
Q psy8454 813 IATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLAT 892 (936)
Q Consensus 813 ~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~ 892 (936)
+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++| ++++.+|..|.||||+|++.|+.++++
T Consensus 53 ~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~ 130 (169)
T 2y1l_E 53 LAAFNGHLEIVEVLLKNGADVNAVD-HAGMTPLRLAALFGHLEIVEVLLKNG-ADVNANDMEGHTPLHLAAMFGHLEIVE 130 (169)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCCCccC-CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 9999999999999999999999998 89999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhC
Q psy8454 893 LLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEA 931 (936)
Q Consensus 893 ~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~ 931 (936)
+|+++|++++.+|..|.|||++|++.|+.+++++|++.|
T Consensus 131 ~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 131 VLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred HHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 999999999999999999999999999999999999875
No 60
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.95 E-value=3.4e-27 Score=231.92 Aligned_cols=134 Identities=30% Similarity=0.483 Sum_probs=127.7
Q ss_pred cccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHH
Q psy8454 800 INICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTAL 879 (936)
Q Consensus 800 ~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL 879 (936)
++..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++| ++++.+|..|.|||
T Consensus 29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L 106 (167)
T 3v31_A 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG-KGRESALSLACSKGYTDIVKMLLDCG-VDVNEYDWNGGTPL 106 (167)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCCCTTSCCHH
T ss_pred cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcC-CCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCcCCCCCCCHH
Confidence 46668889999999999999999999999999999998 89999999999999999999999998 99999999999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCCCcC
Q psy8454 880 HYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPFVL 935 (936)
Q Consensus 880 ~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~~~ 935 (936)
|+|+..|+.+++++|+++|++++.+|..|.||+++|+..|+.+++++|+++++.++
T Consensus 107 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~ 162 (167)
T 3v31_A 107 LYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLL 162 (167)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999876544
No 61
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.95 E-value=6.5e-30 Score=282.93 Aligned_cols=74 Identities=18% Similarity=0.092 Sum_probs=37.5
Q ss_pred CHHHHHHHHhcCCCC----CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHh
Q psy8454 853 NLSIVRLLLAAKQCN----VNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLT 928 (936)
Q Consensus 853 ~~~iv~~LL~~g~~d----vn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll 928 (936)
..+.+++|++.+.+. .......+.||||+|++.|+.++|++|++.| .+++..|.|++.+|...|+.|+++.-+
T Consensus 293 ~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (376)
T 2aja_A 293 LLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP---SVLALTKANNYYINETGGRLDLRAVAL 369 (376)
T ss_dssp GHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH---HHHHSCC--------------------
T ss_pred HHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcCh---HHHHHHHHhccccccccccccHHHHHH
Confidence 355667777643111 1122335679999999999999999999875 567889999999999999999998754
Q ss_pred h
Q psy8454 929 H 929 (936)
Q Consensus 929 ~ 929 (936)
.
T Consensus 370 ~ 370 (376)
T 2aja_A 370 E 370 (376)
T ss_dssp -
T ss_pred H
Confidence 4
No 62
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.94 E-value=1.4e-26 Score=226.15 Aligned_cols=158 Identities=23% Similarity=0.300 Sum_probs=147.7
Q ss_pred hhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHc
Q psy8454 738 KKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSL 817 (936)
Q Consensus 738 ~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~ 817 (936)
...++|+.|+..|+.+++++|++. |++++..+..|.||||+|+.
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~-----------------------------------~~~~~~~~~~g~t~L~~A~~- 47 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQN-----------------------------------NVNVNAQNGFGRTALQVMKL- 47 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTS-----------------------------------CCCTTCCCTTSCCHHHHCCS-
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhC-----------------------------------CCCccccCccCccHHHHHHc-
Confidence 346899999999999999999964 45578889999999999999
Q ss_pred CCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q psy8454 818 GHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKS 897 (936)
Q Consensus 818 g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~ 897 (936)
|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|++.|+.+++++|+++
T Consensus 48 ~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 125 (162)
T 1ihb_A 48 GNPEIARRLLLRGANPDLKD-RTGFAVIHDAARAGFLDTLQTLLEFQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125 (162)
T ss_dssp SCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHcCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 99999999999999999998 89999999999999999999999999 99999999999999999999999999999999
Q ss_pred CCC-CcCcccCCCcHHHHHHHcCCHHHHHHHhhhCCC
Q psy8454 898 GAR-PQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPF 933 (936)
Q Consensus 898 Ga~-~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~ 933 (936)
|++ ++.+|..|.||||+|+..|+.+++++|+++|+.
T Consensus 126 g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 126 TASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp SCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence 998 599999999999999999999999999999874
No 63
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.94 E-value=1.3e-26 Score=228.89 Aligned_cols=159 Identities=25% Similarity=0.366 Sum_probs=149.3
Q ss_pred HHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCC
Q psy8454 740 VEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGH 819 (936)
Q Consensus 740 ~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~ 819 (936)
.++|+.|+..|+.++++++++.+.. .++..+..|.||||+|+..|+
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~----------------------------------~~~~~~~~g~t~L~~A~~~~~ 48 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKGDN----------------------------------LVNKPDERGFTPLIWASAFGE 48 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTCSG----------------------------------GGGCCCTTSCCHHHHHHHTTC
T ss_pred hhhHHHHHHcCCHHHHHHHHHcCcc----------------------------------cccCCCCCCCCHHHHHHHcCC
Confidence 4579999999999999999975532 267789999999999999999
Q ss_pred HHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q psy8454 820 YDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899 (936)
Q Consensus 820 ~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga 899 (936)
.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.++|++|+++|+
T Consensus 49 ~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga 126 (172)
T 3v30_A 49 IETVRFLLEWGADPHILA-KERESALSLASTGGYTDIVGLLLERD-VDINIYDWNGGTPLLYAVRGNHVKCVEALLARGA 126 (172)
T ss_dssp HHHHHHHHHHTCCTTCCC-TTCCCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCchhhc-ccCCCHHHHHHHCCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 999999999999999998 89999999999999999999999998 9999999999999999999999999999999999
Q ss_pred CCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCCCc
Q psy8454 900 RPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPFV 934 (936)
Q Consensus 900 ~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~~ 934 (936)
+++.+|..|.||||+|+..|+.+++++|+++++.+
T Consensus 127 ~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~ 161 (172)
T 3v30_A 127 DLTTEADSGYTPMDLAVALGYRKVQQVIENHILKL 161 (172)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987654
No 64
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.94 E-value=2.8e-26 Score=224.84 Aligned_cols=160 Identities=26% Similarity=0.362 Sum_probs=147.9
Q ss_pred hhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHH
Q psy8454 736 EIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIAT 815 (936)
Q Consensus 736 ~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa 815 (936)
+....++|+.|+..|+.+++++|++.. +.+++..+..|.||||+|+
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~----------------------------------~~~~~~~~~~g~t~L~~A~ 50 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQ----------------------------------SVNCRDIEGRQSTPLHFAA 50 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTT----------------------------------TTTCCCTTTTCCCHHHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcC----------------------------------CCCccccccCCCCHHHHHH
Confidence 446778999999999999999999743 2345677888999999999
Q ss_pred HcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy8454 816 SLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLL 895 (936)
Q Consensus 816 ~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL 895 (936)
..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.+++++|+
T Consensus 51 ~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 128 (165)
T 3twr_A 51 GYNRVSVVEYLLQHGADVHAKD-KGGLVPLHNACSYGHYEVAELLVKHG-AVVNVADLWKFTPLHEAAAKGKYEICKLLL 128 (165)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred HcChHHHHHHHHhcCCCCCccC-CCCCCHHHHHHHcCcHHHHHHHHhCC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999 89999999999999999999999999 999999999999999999999999999999
Q ss_pred HcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCC
Q psy8454 896 KSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAP 932 (936)
Q Consensus 896 ~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~ 932 (936)
++|++++.+|..|.||+|+|++ |+.+++++|+++|+
T Consensus 129 ~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 129 QHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp HTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred HcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence 9999999999999999999887 99999999999986
No 65
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.94 E-value=9.3e-27 Score=248.77 Aligned_cols=94 Identities=33% Similarity=0.480 Sum_probs=77.3
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHH
Q psy8454 804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAA 883 (936)
Q Consensus 804 d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~ 883 (936)
+..|.||||+|+.+|+.+++++|+++|++++..+ ..|.||||+|+..|+.++|++|++..+++++.+|..|+||||+|+
T Consensus 180 ~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d-~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~ 258 (276)
T 4hbd_A 180 SQAGQTALMLAVSHGRVDVVKALLACEADVNVQD-DDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVAL 258 (276)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC-CCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHH
Confidence 5567788888888888888888888888888887 788888888888888888888888333888888888888888888
Q ss_pred HcCCHHHHHHHHHcC
Q psy8454 884 INNHTNLATLLLKSG 898 (936)
Q Consensus 884 ~~g~~~iv~~LL~~G 898 (936)
+.|+.+++++|++++
T Consensus 259 ~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 259 DAGQSEIASMLYSRM 273 (276)
T ss_dssp HHTCHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHhcc
Confidence 888888888888754
No 66
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.94 E-value=6.5e-26 Score=219.19 Aligned_cols=150 Identities=25% Similarity=0.378 Sum_probs=142.0
Q ss_pred HHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCC
Q psy8454 740 VEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGH 819 (936)
Q Consensus 740 ~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~ 819 (936)
.++|+.|+..|+.+++++|++.+. +++ .+..|.||||+|+..|+
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~-----------------------------------~~~-~~~~g~t~L~~A~~~~~ 46 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGA-----------------------------------PFT-TDWLGTSPLHLAAQYGH 46 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTC-----------------------------------CCC-CCTTCCCHHHHHHHHTC
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCC-----------------------------------CCC-cCCCCCCHHHHHHHcCC
Confidence 578999999999999999997543 233 47789999999999999
Q ss_pred HHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q psy8454 820 YDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899 (936)
Q Consensus 820 ~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga 899 (936)
.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.+++++|+++|+
T Consensus 47 ~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga 124 (153)
T 1awc_B 47 FSTTEVLLRAGVSRDART-KVDRTPLHMAASEGHANIVEVLLKHG-ADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA 124 (153)
T ss_dssp HHHHHHHHTTTCCTTCCC-TTCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCCCCCC-CCCCCHHHHHHHcChHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 999999999999999998 89999999999999999999999998 9999999999999999999999999999999999
Q ss_pred CCcCcccCCCcHHHHHHHcCCHHHHHHH
Q psy8454 900 RPQIKNHYGQTCLHMAQQMTSLSLVRVL 927 (936)
Q Consensus 900 ~~~~~d~~g~T~L~~A~~~g~~~iv~~L 927 (936)
+++.+|..|.|||++|+..|+.+++++|
T Consensus 125 ~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 125 DVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred CccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 9999999999999999999999999998
No 67
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.94 E-value=3.9e-26 Score=225.49 Aligned_cols=169 Identities=28% Similarity=0.416 Sum_probs=151.8
Q ss_pred hHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcCCHH
Q psy8454 457 LTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIK 536 (936)
Q Consensus 457 ~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~ 536 (936)
.++|+.|+..|+.+.|+.|++.+... ++.++..|.||||+|+..|+.+
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~--------------------------------~~~~~~~g~t~L~~A~~~~~~~ 50 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKGDNL--------------------------------VNKPDERGFTPLIWASAFGEIE 50 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTCSGG--------------------------------GGCCCTTSCCHHHHHHHTTCHH
T ss_pred hhhHHHHHHcCCHHHHHHHHHcCccc--------------------------------ccCCCCCCCCHHHHHHHcCCHH
Confidence 35899999999999999999987653 2236788999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhccccccc
Q psy8454 537 VVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVL 616 (936)
Q Consensus 537 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~ 616 (936)
++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus 51 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----- 125 (172)
T 3v30_A 51 TVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARG----- 125 (172)
T ss_dssp HHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----
T ss_pred HHHHHHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred ccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCCh
Q psy8454 617 NLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTP 663 (936)
Q Consensus 617 ~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~ 663 (936)
++++..+..|.|||++|++.|+.+++++|+++|++....+..+.||
T Consensus 126 -a~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 126 -ADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171 (172)
T ss_dssp -CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred -CCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence 6788999999999999999999999999999999988888877776
No 68
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.93 E-value=1.8e-28 Score=271.47 Aligned_cols=173 Identities=16% Similarity=0.146 Sum_probs=140.4
Q ss_pred hhhHHHhhhhhcccCCChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCC
Q psy8454 440 TQLKVYNKYNNYKKISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMD 519 (936)
Q Consensus 440 ~~~~~~~~l~~~~~~~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (936)
++++.++++.+.+ ..+.|+|+.|++.|+.++|++|++.+..... .+..+
T Consensus 77 ~~~~~~~~l~~~g-~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~------------------------------~~~~~ 125 (376)
T 2aja_A 77 NAKQLWSDAHKKG-IKSEVICFVAAITGCSSALDTLCLLLTSDEI------------------------------VKVIQ 125 (376)
T ss_dssp TCTTHHHHHHHHT-CCHHHHHHHHHHHCCHHHHHHHTTC--CCSS------------------------------CC--C
T ss_pred CCHHHHHHHHHcC-CCcCCHHHHHHHcCCHHHHHHHHHcCCcHHH------------------------------HHHhc
Confidence 4556666666554 4556999999999999999999998863211 11134
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCCCC---CCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCc--CCCCCCcHHHH
Q psy8454 520 DRGFTVLHVAALYGRIKVVDLVLELGADT---NSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINL--TDNEGNTALHL 594 (936)
Q Consensus 520 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~--~d~~g~t~L~~ 594 (936)
..|.||||+|+..|+.++|++|+++|+++ +..+.+ .||||+|+..|+.+++++|+++|++++. .|..|.||||+
T Consensus 126 ~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~ 204 (376)
T 2aja_A 126 AENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRW 204 (376)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHH
Confidence 45789999999999999999999999752 222223 8999999999999999999999999887 88889999999
Q ss_pred HH-HcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcc
Q psy8454 595 AT-NNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLEN 657 (936)
Q Consensus 595 A~-~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d 657 (936)
|+ ..|+.++|++|++.|+ .|.|||+.|++.|+.+++++|++.|++++..+
T Consensus 205 Aa~~~G~~eiv~~Ll~~ga-------------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~ 255 (376)
T 2aja_A 205 AAVGRGHHNVINFLLDCPV-------------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMH 255 (376)
T ss_dssp HHSTTCCHHHHHHHTTSHH-------------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhCCC-------------ccchHHHHHHHCCCHHHHHHHHhcCccccccc
Confidence 99 9999999999998652 27899999999999999999999988765443
No 69
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.93 E-value=5.2e-26 Score=226.22 Aligned_cols=162 Identities=25% Similarity=0.350 Sum_probs=151.2
Q ss_pred hhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHc
Q psy8454 738 KKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSL 817 (936)
Q Consensus 738 ~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~ 817 (936)
...++|+.|+..|+.+++++|++.. +.+++..+..|.||||+|+..
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~----------------------------------~~~~~~~~~~g~t~L~~A~~~ 49 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNT----------------------------------ENDLNQGDDHGFSPLHWACRE 49 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCT----------------------------------TSCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcC----------------------------------cccccccCCCCCCHHHHHHHc
Confidence 3456799999999999999999743 344788899999999999999
Q ss_pred CCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q psy8454 818 GHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKS 897 (936)
Q Consensus 818 g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~ 897 (936)
|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++| +++|.+|..|.||||+|+..|+.+++++|+++
T Consensus 50 ~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ 127 (179)
T 3f6q_A 50 GRSAVVEMLIMRGARINVMN-RGDDTPLHLAASHGHRDIVQKLLQYK-ADINAVNEHGNVPLHYACFWGQDQVAEDLVAN 127 (179)
T ss_dssp TCHHHHHHHHHTTCCTTCCC-TTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CcHHHHHHHHHcCCCCCCcC-CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 99999999999999999998 89999999999999999999999998 99999999999999999999999999999999
Q ss_pred CCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCCCcC
Q psy8454 898 GARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPFVL 935 (936)
Q Consensus 898 Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~~~ 935 (936)
|++++.+|..|.|||++|+..++.+++++|++.|+.+.
T Consensus 128 ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~ 165 (179)
T 3f6q_A 128 GALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLN 165 (179)
T ss_dssp TCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCS
T ss_pred CCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 99999999999999999999999999999999998764
No 70
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.93 E-value=2.1e-25 Score=216.41 Aligned_cols=154 Identities=21% Similarity=0.296 Sum_probs=145.7
Q ss_pred hHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcC
Q psy8454 739 KVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLG 818 (936)
Q Consensus 739 ~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g 818 (936)
..++|+.|+..|+.+++++|++. .+.+++..+..|.||||+ +..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~----------------------------------~~~~~~~~~~~g~t~L~~-~~~~ 46 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHR----------------------------------ELVHPDALNRFGKTALQV-MMFG 46 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHT----------------------------------TCCCTTCCCTTSCCHHHH-SCTT
T ss_pred cchHHHHHHHhCCHHHHHHHHHh----------------------------------hCcCccccCCCCCcHHHH-HHcC
Confidence 46899999999999999999974 123578889999999999 9999
Q ss_pred CHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q psy8454 819 HYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSG 898 (936)
Q Consensus 819 ~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~G 898 (936)
+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++.| ++++.+|..|+||||+|++.|+.+++++|+++
T Consensus 47 ~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~- 123 (156)
T 1bd8_A 47 STAIALELLKQGASPNVQD-TSGTSPVHDAARTGFLDTLKVLVEHG-ADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE- 123 (156)
T ss_dssp CHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-
T ss_pred CHHHHHHHHHCCCCCCCcC-CCCCCHHHHHHHcCcHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-
Confidence 9999999999999999999 89999999999999999999999999 99999999999999999999999999999999
Q ss_pred CCCcCcccCCCcHHHHHHHcCCHHHHHHHhhh
Q psy8454 899 ARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHE 930 (936)
Q Consensus 899 a~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~ 930 (936)
++++.+|..|.||||+|+..|+.+++++|+++
T Consensus 124 ~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 124 SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 99999999999999999999999999999975
No 71
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.93 E-value=2.4e-25 Score=217.44 Aligned_cols=159 Identities=30% Similarity=0.433 Sum_probs=145.5
Q ss_pred CChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcCC
Q psy8454 455 SSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGR 534 (936)
Q Consensus 455 ~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~ 534 (936)
...++|+.|+..|+.++|++|++.+.+. +.++..|.||||+|+. |+
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~---------------------------------~~~~~~g~t~L~~A~~-~~ 49 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNV---------------------------------NAQNGFGRTALQVMKL-GN 49 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCT---------------------------------TCCCTTSCCHHHHCCS-SC
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCc---------------------------------cccCccCccHHHHHHc-Cc
Confidence 4568999999999999999999887543 2367789999999999 99
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhccccc
Q psy8454 535 IKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQE 614 (936)
Q Consensus 535 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~ 614 (936)
.+++++|+++|++++.++..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++++.
T Consensus 50 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~- 128 (162)
T 1ihb_A 50 PEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS- 128 (162)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC-
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997642
Q ss_pred ccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCC
Q psy8454 615 VLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGAN 652 (936)
Q Consensus 615 ~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~ 652 (936)
.++..+..|.|||++|++.|+.+++++|+++|++
T Consensus 129 ----~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 129 ----NVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp ----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred ----CCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence 3588899999999999999999999999999985
No 72
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.93 E-value=3e-25 Score=223.47 Aligned_cols=169 Identities=25% Similarity=0.366 Sum_probs=153.1
Q ss_pred HHHhhhhhcccCCChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCC
Q psy8454 443 KVYNKYNNYKKISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRG 522 (936)
Q Consensus 443 ~~~~~l~~~~~~~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 522 (936)
.....+.+..+..+.++|+.|+..|+.++|++|++.+.+.. .++..|
T Consensus 22 ~~~~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~---------------------------------~~~~~g 68 (192)
T 2rfm_A 22 QNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLE---------------------------------DKDIEG 68 (192)
T ss_dssp HTHHHHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTT---------------------------------CCCTTS
T ss_pred hhhHHHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccc---------------------------------cccccC
Confidence 34455677788889999999999999999999999886533 267789
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHH
Q psy8454 523 FTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHET 602 (936)
Q Consensus 523 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~e 602 (936)
.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+
T Consensus 69 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 148 (192)
T 2rfm_A 69 STALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSE 148 (192)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHH
T ss_pred ccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCC
Q psy8454 603 CVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHG 650 (936)
Q Consensus 603 iv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g 650 (936)
++++|+++| ++++.++..|.|||++|+..|+.+++++|+++|
T Consensus 149 ~v~~Ll~~g------a~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 149 IVKKLLELG------ADISARDLTGLTAEASARIFGRQEVIKIFTEVR 190 (192)
T ss_dssp HHHHHHHTT------CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCC------CCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence 999999865 578889999999999999999999999999864
No 73
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.93 E-value=1.9e-28 Score=253.79 Aligned_cols=119 Identities=17% Similarity=0.079 Sum_probs=68.1
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHH--HhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHH
Q psy8454 804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIA--CQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHY 881 (936)
Q Consensus 804 d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A--~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~ 881 (936)
|..|.||||+|+..|+.+++++|+++|++++..++..|.||||+| +..|+.+++++|++.| ++++.+|..|.||++.
T Consensus 84 d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~g-a~~~~~~~~~~~~l~~ 162 (229)
T 2vge_A 84 DSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVE-QSMGLMNSGAVYALWD 162 (229)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHH-HHTTTSGGGEEEESSC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcC-CCcccccCCchHHHHH
Confidence 344555555555566666666666666666555434566666666 5666666666666665 5666666666666654
Q ss_pred HHHcCCHHHHHHHHHcCCC--CcCcccCCCcHHHHHHHcCCHHHHHH
Q psy8454 882 AAINNHTNLATLLLKSGAR--PQIKNHYGQTCLHMAQQMTSLSLVRV 926 (936)
Q Consensus 882 A~~~g~~~iv~~LL~~Ga~--~~~~d~~g~T~L~~A~~~g~~~iv~~ 926 (936)
++..+ .+++|++.|++ ++.+|..|+||||+|+..|+.++|+.
T Consensus 163 ~~~~~---~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~ 206 (229)
T 2vge_A 163 YSAEF---GDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPR 206 (229)
T ss_dssp BCCSS---TTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEG
T ss_pred Hhhcc---ccccCccccccccccccCCCcccHHHHHHHcCCcceeeh
Confidence 43332 22455556665 44556666666666666666655543
No 74
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.93 E-value=6.4e-25 Score=216.08 Aligned_cols=158 Identities=34% Similarity=0.518 Sum_probs=141.2
Q ss_pred CCChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcC
Q psy8454 454 ISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYG 533 (936)
Q Consensus 454 ~~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g 533 (936)
..+.++|+.|++.|+.++|++|++.+.+.+ .++..|.||||+|+..|
T Consensus 12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~---------------------------------~~~~~g~t~L~~A~~~~ 58 (169)
T 2y1l_E 12 SDLGKKLLEAARAGRDDEVRILMANGADVN---------------------------------AEDASGWTPLHLAAFNG 58 (169)
T ss_dssp -CHHHHHHHHHHHTCHHHHHHHHHTTCCTT---------------------------------CCCTTSCCHHHHHHHTT
T ss_pred CcccchHHHHHHcCCHHHHHHHHHCCCCCC---------------------------------CCCCCCCCHHHHHHHcC
Confidence 345678999999999999999999876533 26778999999999999
Q ss_pred CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccc
Q psy8454 534 RIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQ 613 (936)
Q Consensus 534 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~ 613 (936)
+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++++
T Consensus 59 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-- 136 (169)
T 2y1l_E 59 HLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNG-- 136 (169)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--
T ss_pred CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred cccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCC
Q psy8454 614 EVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHG 650 (936)
Q Consensus 614 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g 650 (936)
++++.+|..|.|||++|++.|+.+++++|++.|
T Consensus 137 ----~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 137 ----ADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp ----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred ----CCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 577888999999999999999999999999876
No 75
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.93 E-value=1.7e-27 Score=246.62 Aligned_cols=144 Identities=25% Similarity=0.294 Sum_probs=135.4
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHH
Q psy8454 518 MDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATN 597 (936)
Q Consensus 518 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~ 597 (936)
.+..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|++.|++++.+|..|.||||+|+.
T Consensus 17 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~ 96 (229)
T 2vge_A 17 ARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAAS 96 (229)
T ss_dssp TTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred cccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence 56678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHhcccccccccCccccc-CCCChHHHHH--HHhCCHHHHHHHHHCCCCCCCcccCCCChhhhh
Q psy8454 598 NGHETCVKALIYFNEQEVLNLNINAVN-NQGDSPLHAA--ARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667 (936)
Q Consensus 598 ~g~~eiv~~Ll~~~~~~~~~~~~~~~~-~~g~t~L~~A--~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a 667 (936)
.|+.+++++|+++| ++++..+ ..|.|||++| +..|+.+++++|+++|++++..+..|.||++.+
T Consensus 97 ~g~~~~v~~Ll~~g------a~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~ 163 (229)
T 2vge_A 97 CNDTVICMALVQHG------AAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDY 163 (229)
T ss_dssp TTCHHHHHHHHTTT------CCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCB
T ss_pred cCCHHHHHHHHHcC------CCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHH
Confidence 99999999999865 5778776 6999999999 999999999999999999999998888888754
No 76
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.93 E-value=1.1e-25 Score=212.75 Aligned_cols=134 Identities=20% Similarity=0.256 Sum_probs=129.7
Q ss_pred CCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCC-C
Q psy8454 797 CLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYR-G 875 (936)
Q Consensus 797 ~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~-g 875 (936)
+.+++..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+. |+.+++++|+++| ++++.+|.. |
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~-~~~~~v~~Ll~~g-~~~~~~~~~~g 78 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALN-RFGRRPIQVMMM-GSAQVAELLLLHG-AEPNCADPATL 78 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTCCTTTTTSTT-SCHHHHHHHHHHT-CCSSCCBTTTT
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcC-CCCCCHHHHHHc-CCHHHHHHHHHCC-CCCCCcCCCCC
Confidence 45789999999999999999999999999999999999998 899999999999 9999999999999 999999999 9
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCCC
Q psy8454 876 NTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPF 933 (936)
Q Consensus 876 ~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~ 933 (936)
+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+.
T Consensus 79 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 79 TRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp BCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999999863
No 77
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.92 E-value=4.6e-25 Score=219.37 Aligned_cols=168 Identities=27% Similarity=0.356 Sum_probs=147.7
Q ss_pred CChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcCC
Q psy8454 455 SSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGR 534 (936)
Q Consensus 455 ~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~ 534 (936)
...++|+.|++.|+.++|+.|++.+... ++.++..|.||||+|+..|+
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~--------------------------------~~~~~~~g~t~L~~A~~~~~ 51 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTEND--------------------------------LNQGDDHGFSPLHWACREGR 51 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSC--------------------------------TTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCccc--------------------------------ccccCCCCCCHHHHHHHcCc
Confidence 4556899999999999999999886432 23367889999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhccccc
Q psy8454 535 IKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQE 614 (936)
Q Consensus 535 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~ 614 (936)
.+++++|+++|++++.++..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus 52 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g--- 128 (179)
T 3f6q_A 52 SAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANG--- 128 (179)
T ss_dssp HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---
T ss_pred HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred ccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCC
Q psy8454 615 VLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRK 660 (936)
Q Consensus 615 ~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g 660 (936)
++++..+..|.|||++|+..++.+++++|++.|++++..+..+
T Consensus 129 ---a~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~~~~~~ 171 (179)
T 3f6q_A 129 ---ALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKD 171 (179)
T ss_dssp ---CCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCSCBCCCC
T ss_pred ---CCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCcccCCccc
Confidence 5788899999999999999999999999999999988765443
No 78
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.92 E-value=1.3e-24 Score=213.45 Aligned_cols=158 Identities=28% Similarity=0.386 Sum_probs=136.2
Q ss_pred ChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcCCH
Q psy8454 456 SLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRI 535 (936)
Q Consensus 456 ~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~ 535 (936)
+.++|+.|+..|+.++|++|++.+.+. +.++..|.||||+|+..|+.
T Consensus 3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~---------------------------------~~~~~~g~t~L~~A~~~~~~ 49 (167)
T 3v31_A 3 NSLSVHQLAAQGEMLYLATRIEQENVI---------------------------------NHTDEEGFTPLMWAAAHGQI 49 (167)
T ss_dssp TCCCHHHHHHTTCHHHHHHHHHHSSCT---------------------------------TCCCTTSCCHHHHHHHTTCH
T ss_pred CcchHHHHHHCCCHHHHHHHHHcCCCc---------------------------------CCCCCCCCCHHHHHHHCCCH
Confidence 456889999999999999999887543 23677888999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccccc
Q psy8454 536 KVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEV 615 (936)
Q Consensus 536 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~ 615 (936)
+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus 50 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---- 125 (167)
T 3v31_A 50 AVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG---- 125 (167)
T ss_dssp HHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT----
T ss_pred HHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC----
Confidence 9999999999999988888999999999999999999999999999999999999999999999999999999865
Q ss_pred cccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCC
Q psy8454 616 LNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGAN 652 (936)
Q Consensus 616 ~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~ 652 (936)
++++..+..|.|||++|++.|+.+++++|++++.+
T Consensus 126 --~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~ 160 (167)
T 3v31_A 126 --ADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLK 160 (167)
T ss_dssp --CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred --CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHH
Confidence 56788888899999999999999999999887654
No 79
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.92 E-value=2.5e-24 Score=208.04 Aligned_cols=150 Identities=30% Similarity=0.469 Sum_probs=136.4
Q ss_pred hHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcCCHH
Q psy8454 457 LTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIK 536 (936)
Q Consensus 457 ~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~ 536 (936)
.++|+.|++.|+.++|++|++.+.+.. .+..|.||||+|+..|+.+
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~----------------------------------~~~~g~t~L~~A~~~~~~~ 48 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFT----------------------------------TDWLGTSPLHLAAQYGHFS 48 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCC----------------------------------CCTTCCCHHHHHHHHTCHH
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCC----------------------------------cCCCCCCHHHHHHHcCCHH
Confidence 468999999999999999999876431 4567899999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhccccccc
Q psy8454 537 VVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVL 616 (936)
Q Consensus 537 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~ 616 (936)
++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus 49 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----- 123 (153)
T 1awc_B 49 TTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG----- 123 (153)
T ss_dssp HHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----
T ss_pred HHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred ccCcccccCCCChHHHHHHHhCCHHHHHHH
Q psy8454 617 NLNINAVNNQGDSPLHAAARWGYTSIIQLL 646 (936)
Q Consensus 617 ~~~~~~~~~~g~t~L~~A~~~g~~~iv~~L 646 (936)
++++.++..|.|||++|++.|+.+++++|
T Consensus 124 -a~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 124 -ADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp -CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred -CCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 57888999999999999999999999987
No 80
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.92 E-value=7e-25 Score=214.86 Aligned_cols=160 Identities=33% Similarity=0.449 Sum_probs=137.2
Q ss_pred cCCChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHc
Q psy8454 453 KISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALY 532 (936)
Q Consensus 453 ~~~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~ 532 (936)
+..+.++|+.|++.|+.+.|+.|++.+... .+..+..|.||||+|+..
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~--------------------------------~~~~~~~g~t~L~~A~~~ 52 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVN--------------------------------CRDIEGRQSTPLHFAAGY 52 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTTTT--------------------------------CCCTTTTCCCHHHHHHHT
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCCCC--------------------------------ccccccCCCCHHHHHHHc
Confidence 345678999999999999999998764322 223667788999999999
Q ss_pred CCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhccc
Q psy8454 533 GRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNE 612 (936)
Q Consensus 533 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~ 612 (936)
|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++++
T Consensus 53 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g- 131 (165)
T 3twr_A 53 NRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG- 131 (165)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-
T ss_pred ChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred ccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCC
Q psy8454 613 QEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGA 651 (936)
Q Consensus 613 ~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga 651 (936)
++++.+|..|.|||++|++ |+.+++++|+++|+
T Consensus 132 -----a~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 132 -----ADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp -----CCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred -----CCCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence 5778889999999999776 88999999998875
No 81
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.91 E-value=7.9e-24 Score=205.17 Aligned_cols=154 Identities=31% Similarity=0.468 Sum_probs=141.6
Q ss_pred ChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcCCH
Q psy8454 456 SLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRI 535 (936)
Q Consensus 456 ~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~ 535 (936)
+.++|+.|++.|+.+.++.|++.... .++..+..|.||||+ +..|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~--------------------------------~~~~~~~~g~t~L~~-~~~~~~ 48 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELV--------------------------------HPDALNRFGKTALQV-MMFGST 48 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCC--------------------------------CTTCCCTTSCCHHHH-SCTTCH
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCc--------------------------------CccccCCCCCcHHHH-HHcCCH
Confidence 45799999999999999999998211 223367889999999 999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccccc
Q psy8454 536 KVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEV 615 (936)
Q Consensus 536 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~ 615 (936)
+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++.
T Consensus 49 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----- 123 (156)
T 1bd8_A 49 AIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE----- 123 (156)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-----
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred cccCcccccCCCChHHHHHHHhCCHHHHHHHHHC
Q psy8454 616 LNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDH 649 (936)
Q Consensus 616 ~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ 649 (936)
.+++..+..|.|||++|++.|+.+++++|+++
T Consensus 124 --~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 124 --SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp --SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred --cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 47888999999999999999999999999874
No 82
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.91 E-value=3.8e-25 Score=231.03 Aligned_cols=106 Identities=27% Similarity=0.389 Sum_probs=52.3
Q ss_pred ccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCC-cHH
Q psy8454 801 NICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGN-TAL 879 (936)
Q Consensus 801 n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~-TpL 879 (936)
|..|..|.||||+||..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++| ++++.++..|. |||
T Consensus 64 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d-~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~~~~t~l 141 (239)
T 1ycs_B 64 SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD-SDGWTPLHCAASCNNVQVCKFLVESG-AAVFAMTYSDMQTAA 141 (239)
T ss_dssp CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCC-TTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCSSSCCCHH
T ss_pred CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCCCCHHHHHHHcCCHHHHHHHHHcC-CCcceecCCCCcchH
Confidence 3334444555555555555555555555555555444 44555555555555555555555544 45555444443 555
Q ss_pred HHH--HHcCCHHHHHHHHHcCCCCcCcccCC
Q psy8454 880 HYA--AINNHTNLATLLLKSGARPQIKNHYG 908 (936)
Q Consensus 880 ~~A--~~~g~~~iv~~LL~~Ga~~~~~d~~g 908 (936)
|+| +..|+.+++++|+++|++++..+..+
T Consensus 142 ~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~ 172 (239)
T 1ycs_B 142 DKCEEMEEGYTQCSQFLYGVQEKMGIMNKGV 172 (239)
T ss_dssp HHCCSSSTTCCCHHHHHHHHHHHTTTTGGGE
T ss_pred HHHHHhhhccHHHHHHHHHhhhcccccccce
Confidence 554 44445555555555555544444433
No 83
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.90 E-value=5.9e-24 Score=200.82 Aligned_cols=127 Identities=34% Similarity=0.417 Sum_probs=121.0
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHH
Q psy8454 803 CNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYA 882 (936)
Q Consensus 803 ~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A 882 (936)
....|.||||+||..|+.+++++|+++|++++..+ ..|.||||+||..|+.+++++|+++| +++|.+|..|+||||+|
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A 87 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMANGADVNAKD-EYGLTPLYLATAHGHLEIVEVLLKNG-ADVNAVDAIGFTPLHLA 87 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHH
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcC-CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCHHHHH
Confidence 35668899999999999999999999999999998 89999999999999999999999998 99999999999999999
Q ss_pred HHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhC
Q psy8454 883 AINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEA 931 (936)
Q Consensus 883 ~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~ 931 (936)
+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.|
T Consensus 88 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 88 AFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999875
No 84
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.90 E-value=1.9e-23 Score=194.16 Aligned_cols=126 Identities=40% Similarity=0.637 Sum_probs=122.7
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHc
Q psy8454 806 DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAIN 885 (936)
Q Consensus 806 ~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~ 885 (936)
+|.||||.|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++.| ++++.+|..|.||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~l~~A~~~ 78 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKD-KNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARN 78 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHT
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcC-CCCCcHHHHHHHcCcHHHHHHHHHcC-CCCcccCCCCCcHHHHHHHc
Confidence 58999999999999999999999999999988 89999999999999999999999998 99999999999999999999
Q ss_pred CCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCCC
Q psy8454 886 NHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPF 933 (936)
Q Consensus 886 g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~ 933 (936)
|+.+++++|+++|++++.+|..|.|||++|+..|+.+++++|+++|+.
T Consensus 79 ~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 79 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred ChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999999874
No 85
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.90 E-value=1.2e-24 Score=216.95 Aligned_cols=152 Identities=15% Similarity=0.087 Sum_probs=137.1
Q ss_pred HHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCC-CCCCcHHHHHHHcC
Q psy8454 740 VEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICN-SDGYTALHIATSLG 818 (936)
Q Consensus 740 ~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d-~~g~t~L~~Aa~~g 818 (936)
..+++.|++.|+.+.++.++..+ ++..+ ..|.||||+|+.+|
T Consensus 7 ~~~l~~Aa~~g~~~~~~~l~~~~-------------------------------------~~~~~~~~g~T~Lh~A~~~~ 49 (186)
T 3t8k_A 7 YRTVSAAAMLGTYEDFLELFEKG-------------------------------------YEDKESVLKSNILYDVLRNN 49 (186)
T ss_dssp CSSHHHHHHHSCHHHHHHHHHHS-------------------------------------SSCHHHHHTTTHHHHHTTCS
T ss_pred ccHHHHHHHcCCHHHHHHHHhcC-------------------------------------cccccccCCCCHHHHHHHcC
Confidence 35799999999999999888633 23344 67999999999999
Q ss_pred CH----HHHHHHHhCCCCcccccccCCCcHHHHHHhCCC------HHHHHHHHhcCCCCCCCCCCCCC-cHHHHHHHcC-
Q psy8454 819 HY----DLVRLLINYRADINIVTRVKQLTPLHIACQNNN------LSIVRLLLAAKQCNVNAQDYRGN-TALHYAAINN- 886 (936)
Q Consensus 819 ~~----~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~------~~iv~~LL~~g~~dvn~~d~~g~-TpL~~A~~~g- 886 (936)
+. +++++|+++|++++.++ ..|+||||+|+..|+ .+++++|+++| +|+|.+|..|+ ||||+|+..|
T Consensus 50 ~~~~~~~iv~~Ll~~Gadvn~~d-~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~G-adin~~d~~g~ttpLh~A~~~~~ 127 (186)
T 3t8k_A 50 NDEARYKISMFLINKGADIKSRT-KEGTTLFFPLFQGGGNDITGTTELCKIFLEKG-ADITALYKPYKIVVFKNIFNYFV 127 (186)
T ss_dssp CHHHHHHHHHHHHHTTCCSSCCC-TTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTT-CCSSSCBGGGTBCTTGGGGGCCS
T ss_pred CcchHHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHcCCcchhhHHHHHHHHHHCC-CCCCccCCCcCchHHHHHHHcCC
Confidence 75 59999999999999999 999999999999987 68999999999 99999999999 9999999954
Q ss_pred ----CHHHHHHHHH-cCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhh
Q psy8454 887 ----HTNLATLLLK-SGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHE 930 (936)
Q Consensus 887 ----~~~iv~~LL~-~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~ 930 (936)
+.+++++|++ +|++++.+|..|+||||+|++.|+.++|++|.+.
T Consensus 128 ~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~ 176 (186)
T 3t8k_A 128 DENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY 176 (186)
T ss_dssp CHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHH
Confidence 4569999999 9999999999999999999999999999999864
No 86
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.90 E-value=2.4e-24 Score=203.91 Aligned_cols=134 Identities=31% Similarity=0.434 Sum_probs=122.0
Q ss_pred CCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCC
Q psy8454 797 CLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGN 876 (936)
Q Consensus 797 ~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~ 876 (936)
|+|+ .+|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++| ++++.+|..|+
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~ 77 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKD-HAGWTPLHEACNHGHLKVVELLLQHK-ALVNTTGYQND 77 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC-TTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCGGGC
T ss_pred CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCC-CCCCCHHHHHHHcCCHHHHHHHHHcC-CcccCcCCCCC
Confidence 4566 678999999999999999999999999999999998 89999999999999999999999998 99999999999
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCCC
Q psy8454 877 TALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPF 933 (936)
Q Consensus 877 TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~ 933 (936)
||||+|++.|+.+++++|+++|++++.+|..|.||+++|+..++.+++++|.+++++
T Consensus 78 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~s 134 (137)
T 3c5r_A 78 SPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134 (137)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC------
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccccC
Confidence 999999999999999999999999999999999999999999999999999887664
No 87
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.90 E-value=7.2e-24 Score=205.49 Aligned_cols=131 Identities=21% Similarity=0.239 Sum_probs=121.4
Q ss_pred ccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCc-HH
Q psy8454 801 NICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNT-AL 879 (936)
Q Consensus 801 n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~T-pL 879 (936)
+..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+ .|+.+++++|+++| ++++.+|..|+| ||
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~-~~~~~~v~~Ll~~g-~~~~~~d~~g~ttpL 82 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPN-SYGRRPIQVMM-MGSARVAELLLLHG-AEPNCADPATLTRPV 82 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCC-SSSCCTTTSSC-TTCHHHHHHHHTTT-CCCCCCCTTTCCCHH
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCCHHHHHH-cCCHHHHHHHHHcC-CCCCCcCCCCCcHHH
Confidence 4567889999999999999999999999999999998 89999999995 99999999999998 999999999999 99
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCCCc
Q psy8454 880 HYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPFV 934 (936)
Q Consensus 880 ~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~~ 934 (936)
|+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+.+
T Consensus 83 ~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~ 137 (156)
T 1bi7_B 83 HDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGT 137 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---
T ss_pred HHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999999999999999999875
No 88
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.89 E-value=1.5e-23 Score=203.26 Aligned_cols=146 Identities=23% Similarity=0.279 Sum_probs=120.2
Q ss_pred cccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCc-HHH
Q psy8454 515 TQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNT-ALH 593 (936)
Q Consensus 515 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t-~L~ 593 (936)
....+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+ .|+.+++++|++.|++++.+|..|.| |||
T Consensus 5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~ 83 (156)
T 1bi7_B 5 AGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVH 83 (156)
T ss_dssp -----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHH
T ss_pred ccCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHH
Confidence 3446778999999999999999999999999999999999999999996 99999999999999999999999999 999
Q ss_pred HHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhh
Q psy8454 594 LATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667 (936)
Q Consensus 594 ~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a 667 (936)
+|+..|+.+++++|+++| ++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||.+.+
T Consensus 84 ~A~~~~~~~~v~~Ll~~g------a~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 84 DAAREGFLDTLVVLHRAG------ARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHHHTCHHHHHHHHHHT------CCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred HHHHCCCHHHHHHHHHcC------CCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence 999999999999999865 67899999999999999999999999999999999999999999998744
No 89
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.89 E-value=6.2e-24 Score=221.81 Aligned_cols=174 Identities=18% Similarity=0.166 Sum_probs=128.6
Q ss_pred CChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcCC
Q psy8454 455 SSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGR 534 (936)
Q Consensus 455 ~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~ 534 (936)
.+.++|+.|++.|+.+.++.|++.|.+... +..|.||||.|+..|+
T Consensus 4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~----------------------------------~~~~~t~L~~A~~~g~ 49 (239)
T 1ycs_B 4 TGQVSLPPGKRTNLRKTGSERIAHGMRVKF----------------------------------NPLPLALLLDSSLEGE 49 (239)
T ss_dssp -------------------------------------------------------------------CHHHHHHHHHHTC
T ss_pred cccccCchhhhhhhHHHHHHHhccCCCccc----------------------------------CchhhHHHHHHHHcCC
Confidence 577899999999999999999999876532 3458899999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhccccc
Q psy8454 535 IKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQE 614 (936)
Q Consensus 535 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~ 614 (936)
.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus 50 ~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g--- 126 (239)
T 1ycs_B 50 FDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG--- 126 (239)
T ss_dssp HHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT---
T ss_pred HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred ccccCcccccCCCC-hHHHHH--HHhCCHHHHHHHHHCCCCCCCcc---------cCCCChhhhhh
Q psy8454 615 VLNLNINAVNNQGD-SPLHAA--ARWGYTSIIQLLLDHGANPTLEN---------KRKVTPLQNAN 668 (936)
Q Consensus 615 ~~~~~~~~~~~~g~-t~L~~A--~~~g~~~iv~~Ll~~ga~~~~~d---------~~g~t~l~~a~ 668 (936)
++++..+..|. ||||+| +..|+.+++++|++.|++++..+ ..+.++.+.+.
T Consensus 127 ---a~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~ 189 (239)
T 1ycs_B 127 ---AAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPM 189 (239)
T ss_dssp ---CCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCB
T ss_pred ---CCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccc
Confidence 57888888877 999999 78899999999999999887764 44556655554
No 90
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.89 E-value=3.4e-23 Score=195.60 Aligned_cols=132 Identities=24% Similarity=0.289 Sum_probs=126.5
Q ss_pred CcccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCC-CCcHH
Q psy8454 514 TTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNE-GNTAL 592 (936)
Q Consensus 514 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~-g~t~L 592 (936)
.++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+. |+.+++++|+++|++++.+|.. |.|||
T Consensus 4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L 82 (136)
T 1d9s_A 4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPV 82 (136)
T ss_dssp CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHH
T ss_pred CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHH
Confidence 566788999999999999999999999999999999999999999999999 9999999999999999999999 99999
Q ss_pred HHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCC
Q psy8454 593 HLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGAN 652 (936)
Q Consensus 593 ~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~ 652 (936)
|+|+..|+.+++++|++++ ++++.++..|.|||++|++.|+.+++++|+++|++
T Consensus 83 ~~A~~~~~~~~v~~Ll~~g------a~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 83 HDAAREGFLDTLVVLHRAG------ARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp HHHHHHTCHHHHHHHHHTC------CCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred HHHHHcCCHHHHHHHHHcC------CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 9999999999999999865 57899999999999999999999999999999875
No 91
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.88 E-value=1.3e-23 Score=209.44 Aligned_cols=158 Identities=15% Similarity=0.085 Sum_probs=139.2
Q ss_pred HHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcCCH--
Q psy8454 458 TKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRI-- 535 (936)
Q Consensus 458 ~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~-- 535 (936)
++|+.|++.|+.+.++.+++.+.... .+..|.||||+|+..|+.
T Consensus 8 ~~l~~Aa~~g~~~~~~~l~~~~~~~~----------------------------------~~~~g~T~Lh~A~~~~~~~~ 53 (186)
T 3t8k_A 8 RTVSAAAMLGTYEDFLELFEKGYEDK----------------------------------ESVLKSNILYDVLRNNNDEA 53 (186)
T ss_dssp SSHHHHHHHSCHHHHHHHHHHSSSCH----------------------------------HHHHTTTHHHHHTTCSCHHH
T ss_pred cHHHHHHHcCCHHHHHHHHhcCcccc----------------------------------cccCCCCHHHHHHHcCCcch
Confidence 47999999999999999998764321 124589999999999985
Q ss_pred --HHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCc------HHHHHHHHhCCCCCCcCCCCCC-cHHHHHHHcC-----cH
Q psy8454 536 --KVVDLVLELGADTNSQDLCGCSPLHYAATRGH------QNVLLLLLHSGASINLTDNEGN-TALHLATNNG-----HE 601 (936)
Q Consensus 536 --~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~------~~iv~~Ll~~g~~~~~~d~~g~-t~L~~A~~~g-----~~ 601 (936)
+++++|+++|+++|.+|..|+||||+|+..|+ .+++++|+++|++++.+|..|. ||||+|+..+ +.
T Consensus 54 ~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~ 133 (186)
T 3t8k_A 54 RYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMI 133 (186)
T ss_dssp HHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHH
Confidence 59999999999999999999999999999987 6889999999999999999999 9999999944 46
Q ss_pred HHHHHHHh-cccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCC
Q psy8454 602 TCVKALIY-FNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTL 655 (936)
Q Consensus 602 eiv~~Ll~-~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~ 655 (936)
+++++|++ +| ++++.+|..|.||||+|++.|+.+++++|.++....+.
T Consensus 134 ~iv~~Ll~~~g------ad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~ 182 (186)
T 3t8k_A 134 PLYKLIFSQSG------LQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNL 182 (186)
T ss_dssp HHHHHHHTSTT------CCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcC------CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 79999998 55 68999999999999999999999999999987544443
No 92
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.87 E-value=2.2e-22 Score=186.31 Aligned_cols=116 Identities=26% Similarity=0.276 Sum_probs=107.8
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHH
Q psy8454 804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAA 883 (936)
Q Consensus 804 d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~ 883 (936)
+..|.||||.|+..|+.+++++|+++|++++..+ ..|.||||+||..|+.+++++|++.| +++|.+|..|+||||+|+
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~tpL~~A~ 81 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTL-EGGRKPLHYAADCGQLEILEFLLLKG-ADINAPDKHHITPLLSAV 81 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCC-TTSSCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccC-CCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCHHHHHH
Confidence 5678899999999999999999999999999998 89999999999999999999999998 999999999999999999
Q ss_pred HcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCH
Q psy8454 884 INNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSL 921 (936)
Q Consensus 884 ~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~ 921 (936)
..|+.++|++|+++|++++.+|..|.||+|+|...+..
T Consensus 82 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~ 119 (123)
T 3aaa_C 82 YEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIK 119 (123)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHH
T ss_pred HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHH
Confidence 99999999999999999999999999999999544333
No 93
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.87 E-value=1.7e-21 Score=180.94 Aligned_cols=126 Identities=48% Similarity=0.716 Sum_probs=121.5
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCc
Q psy8454 521 RGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGH 600 (936)
Q Consensus 521 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~ 600 (936)
+|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 80 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCC
Q psy8454 601 ETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGAN 652 (936)
Q Consensus 601 ~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~ 652 (936)
.+++++|++++ ++++.++..|.|||++|++.|+.+++++|+++|++
T Consensus 81 ~~~~~~Ll~~g------~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 81 LEVVKLLLEAG------ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHHHHHHHHTT------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcC------CCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 99999999865 57888999999999999999999999999999985
No 94
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.87 E-value=1.3e-21 Score=184.65 Aligned_cols=127 Identities=28% Similarity=0.379 Sum_probs=119.8
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHH
Q psy8454 518 MDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATN 597 (936)
Q Consensus 518 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~ 597 (936)
....|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+.
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~ 89 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAF 89 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCC
Q psy8454 598 NGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHG 650 (936)
Q Consensus 598 ~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g 650 (936)
.|+.+++++|++++ ++++..|..|.|||++|++.|+.+++++|+++|
T Consensus 90 ~~~~~~v~~Ll~~g------~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 90 IGHLEIAEVLLKHG------ADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HTCHHHHHHHHHTT------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHcC------CCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 99999999999865 578899999999999999999999999999976
No 95
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.86 E-value=3e-22 Score=206.52 Aligned_cols=134 Identities=25% Similarity=0.325 Sum_probs=119.9
Q ss_pred cccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHH
Q psy8454 800 INICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTAL 879 (936)
Q Consensus 800 ~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL 879 (936)
++..+..|.||||+||..|+.+++++|++.|++++..+ ..|.||||+||..|+.++|++|++.+++++|.+|..|+|||
T Consensus 66 v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL 144 (222)
T 3ehr_A 66 VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLD-KAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTAL 144 (222)
T ss_dssp HHHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHH
T ss_pred ccccccccccccccccccCcHHHHHHHHhCCCCccccC-CCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHH
Confidence 34557789999999999999999999999999999998 89999999999999999999999994499999999999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCCCc
Q psy8454 880 HYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPFV 934 (936)
Q Consensus 880 ~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~~ 934 (936)
|+|+..|+.++|++|+++|++++.+|..|.|||++|+..|+.++++.|++.++..
T Consensus 145 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~ 199 (222)
T 3ehr_A 145 HAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVR 199 (222)
T ss_dssp HHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC---------
T ss_pred HHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhh
Confidence 9999999999999999999999999999999999999999999999999887653
No 96
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.84 E-value=2.2e-21 Score=193.36 Aligned_cols=125 Identities=24% Similarity=0.268 Sum_probs=116.9
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCC-CCCCcHHHH
Q psy8454 803 CNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQD-YRGNTALHY 881 (936)
Q Consensus 803 ~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d-~~g~TpL~~ 881 (936)
.+..|.||||.|+..|+.++++.|++ |++++..+ ..|.||||+|+..|+.+++++|+++| +++|.+| ..|+||||+
T Consensus 40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d-~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~~g~tpL~~ 116 (183)
T 3deo_A 40 VVSEYETPWWTAARKADEQALSQLLE-DRDVDAVD-ENGRTALLFVAGLGSDKCVRLLAEAG-ADLDHRDMRGGLTALHM 116 (183)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCSSSSCCHHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcC-CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCCHHHH
Confidence 35688999999999999999999999 99999998 89999999999999999999999998 9999998 899999999
Q ss_pred HHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHc----------------CCHHHHHHHhhh
Q psy8454 882 AAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM----------------TSLSLVRVLTHE 930 (936)
Q Consensus 882 A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~----------------g~~~iv~~Ll~~ 930 (936)
|+..|+.+++++|+++|++++.+|..|.||||+|++. |+.+++++|.++
T Consensus 117 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 117 AAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp HHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccCcccccHHHHHHHcCHHHHHHHHHHh
Confidence 9999999999999999999999999999999988776 677888888654
No 97
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.83 E-value=8.6e-21 Score=198.44 Aligned_cols=124 Identities=24% Similarity=0.270 Sum_probs=118.0
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCC-CCCCcHHHHH
Q psy8454 804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQD-YRGNTALHYA 882 (936)
Q Consensus 804 d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d-~~g~TpL~~A 882 (936)
+..|.||||.||..|+.+++++|++ |++++..+ ..|.||||+||..|+.++|++|+++| +++|.+| ..|+||||+|
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~~g~t~L~~A 118 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVD-ENGRTALLFVAGLGSDKCVRLLAEAG-ADLDHRDMRGGLTALHMA 118 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBC-TTSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCSSSCCCHHHHH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcC-CCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCcCCCCCCCCHHHHH
Confidence 4578999999999999999999999 99999999 89999999999999999999999998 9999998 8899999999
Q ss_pred HHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHH----------------HcCCHHHHHHHhhh
Q psy8454 883 AINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQ----------------QMTSLSLVRVLTHE 930 (936)
Q Consensus 883 ~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~----------------~~g~~~iv~~Ll~~ 930 (936)
+..|+.++|++|+++|++++.+|..|.||||+|+ ..|+.+++++|+++
T Consensus 119 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~ 182 (244)
T 3ui2_A 119 AGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQ 182 (244)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHh
Confidence 9999999999999999999999999999999888 66899999999875
No 98
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.83 E-value=1e-20 Score=203.83 Aligned_cols=140 Identities=21% Similarity=0.257 Sum_probs=121.8
Q ss_pred hHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCccc------CCCCCCcHHH
Q psy8454 739 KVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINI------CNSDGYTALH 812 (936)
Q Consensus 739 ~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~------~d~~g~t~L~ 812 (936)
...+|+.|+..|+.+.++.|+..+.+ ++. .+..|.||||
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d-----------------------------------~~~~~~~~~~~~~g~t~Lh 195 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQD-----------------------------------FGQPLPGPDAQAPEELVLH 195 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCC-----------------------------------TTSCEECSSSCSCEECHHH
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCc-----------------------------------ccccCCCcccCCCCccHHH
Confidence 34679999999999999999875544 343 5889999999
Q ss_pred HHHHc---CCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHH
Q psy8454 813 IATSL---GHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTN 889 (936)
Q Consensus 813 ~Aa~~---g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~ 889 (936)
+|+.. |+.+++++|+++|++++..+ ..|.||||+|+..|+.++|++|+++| ++++.+|..|.||||+|+..|+.+
T Consensus 196 ~A~~~~~~~~~~iv~~Ll~~gadvn~~d-~~G~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~~~~~~~ 273 (301)
T 2b0o_E 196 LAVKVANQASLPLVDFIIQNGGHLDAKA-ADGNTALHYAALYNQPDCLKLLLKGR-ALVGTVNEAGETALDIARKKHHKE 273 (301)
T ss_dssp HHHHTCCTTTHHHHHHHHHHSSCTTCCC-TTCCCHHHHHHHTTCHHHHHHHHHTT-CCCSCCCTTSCCHHHHHHHHTCHH
T ss_pred HHHHhcccCcHHHHHHHHhcCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHH
Confidence 99997 89999999999999999999 89999999999999999999999998 999999999999999999999999
Q ss_pred HHHHHHHcCCCCcCcccCCCcHHHHHHHcCCH
Q psy8454 890 LATLLLKSGARPQIKNHYGQTCLHMAQQMTSL 921 (936)
Q Consensus 890 iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~ 921 (936)
++++|+++|++ .|.||||+|+++|+.
T Consensus 274 iv~~Ll~~ga~------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 274 CEELLEQAQAG------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp HHHHHHHHHHH------TTSSCCC--------
T ss_pred HHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence 99999999986 589999999999874
No 99
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.83 E-value=6.8e-20 Score=195.11 Aligned_cols=124 Identities=25% Similarity=0.292 Sum_probs=106.6
Q ss_pred cHHHHHHHcCCHHHHHHHHhCCCCccccc-----ccCCCcHHHHHHhC---CCHHHHHHHHhcCCCCCCCCCCCCCcHHH
Q psy8454 809 TALHIATSLGHYDLVRLLINYRADINIVT-----RVKQLTPLHIACQN---NNLSIVRLLLAAKQCNVNAQDYRGNTALH 880 (936)
Q Consensus 809 t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~-----~~~g~TpLh~A~~~---g~~~iv~~LL~~g~~dvn~~d~~g~TpL~ 880 (936)
++|+.|+..|+.+.++.+++.|++++... +..|.||||+|+.. |+.+++++|+++| +++|.+|..|+||||
T Consensus 132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~g-a~in~~d~~g~TpLh 210 (278)
T 1dcq_A 132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS-GNLDKQTGKGSTALH 210 (278)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC-SCTTCCCTTCCCHHH
T ss_pred hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCC-CCccccCCCCCCHHH
Confidence 57888888888888888888888855431 27788999999988 8889999999888 889999989999999
Q ss_pred HHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCCC
Q psy8454 881 YAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPF 933 (936)
Q Consensus 881 ~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~ 933 (936)
+|+..|+.++|++|+++||+++.+|..|.||||+|+..|+.+++++|+++|+.
T Consensus 211 ~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 211 YCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999887764
No 100
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.82 E-value=5.1e-20 Score=173.94 Aligned_cols=128 Identities=33% Similarity=0.438 Sum_probs=75.9
Q ss_pred CCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccccccccCccccc
Q psy8454 545 GADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVN 624 (936)
Q Consensus 545 g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~ 624 (936)
|+++ .+|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++++ ++++.++
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g------~~~~~~~ 73 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK------ALVNTTG 73 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT------CCTTCCC
T ss_pred CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC------CcccCcC
Confidence 3444 45555666666666666666666666666666666666666666666666666666666543 3455556
Q ss_pred CCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHh
Q psy8454 625 NQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAY 679 (936)
Q Consensus 625 ~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~ 679 (936)
..|.||||+|++.|+.+++++|+++|++++..|..|.||+++|...+..+++..+
T Consensus 74 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l 128 (137)
T 3c5r_A 74 YQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLP 128 (137)
T ss_dssp GGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhc
Confidence 6666666666666666666666666666666666666666666665555555433
No 101
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.82 E-value=6.5e-20 Score=160.25 Aligned_cols=91 Identities=42% Similarity=0.626 Sum_probs=60.0
Q ss_pred CCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCC
Q psy8454 841 QLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTS 920 (936)
Q Consensus 841 g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~ 920 (936)
|+||||+|+..|+.+++++|++.| +++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g-~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~ 80 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence 556666666666666666666666 6666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhhhCC
Q psy8454 921 LSLVRVLTHEAP 932 (936)
Q Consensus 921 ~~iv~~Ll~~~~ 932 (936)
.+++++|+++|+
T Consensus 81 ~~~~~~Ll~~ga 92 (93)
T 1n0q_A 81 LEVVKLLLEAGA 92 (93)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 666666666654
No 102
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.81 E-value=1.1e-19 Score=158.72 Aligned_cols=93 Identities=45% Similarity=0.692 Sum_probs=89.2
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHc
Q psy8454 806 DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAIN 885 (936)
Q Consensus 806 ~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~ 885 (936)
+|.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|++.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d-~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~t~l~~A~~~ 78 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKD-KNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARN 78 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHc
Confidence 48999999999999999999999999999999 89999999999999999999999999 99999999999999999999
Q ss_pred CCHHHHHHHHHcCCC
Q psy8454 886 NHTNLATLLLKSGAR 900 (936)
Q Consensus 886 g~~~iv~~LL~~Ga~ 900 (936)
|+.+++++|+++||+
T Consensus 79 ~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 79 GHLEVVKLLLEAGAY 93 (93)
T ss_dssp TCHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHcCCC
Confidence 999999999999985
No 103
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.81 E-value=2.9e-19 Score=192.47 Aligned_cols=141 Identities=21% Similarity=0.208 Sum_probs=125.5
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCC------CCCCCCcHHHHHHHh---CcHHHHHHHHhCCCCCCcCCCCCCc
Q psy8454 520 DRGFTVLHVAALYGRIKVVDLVLELGADTNS------QDLCGCSPLHYAATR---GHQNVLLLLLHSGASINLTDNEGNT 590 (936)
Q Consensus 520 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------~~~~g~t~L~~A~~~---g~~~iv~~Ll~~g~~~~~~d~~g~t 590 (936)
..+.++|+.|+..|+.+.++.|++.|++++. .+..|.||||+|+.. |+.+++++|+++|++++.+|..|.|
T Consensus 149 ~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~T 228 (301)
T 2b0o_E 149 TPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNT 228 (301)
T ss_dssp C-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCC
T ss_pred CchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCC
Confidence 3456789999999999999999999999998 688999999999997 8999999999999999999999999
Q ss_pred HHHHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhch
Q psy8454 591 ALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNL 670 (936)
Q Consensus 591 ~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~ 670 (936)
|||+|+..|+.++|++|+++| ++++.+|..|.|||++|+..|+.+++++|+++|++ .|.||||+|+..
T Consensus 229 pLh~A~~~g~~~~v~~Ll~~g------ad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~ 296 (301)
T 2b0o_E 229 ALHYAALYNQPDCLKLLLKGR------ALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSW 296 (301)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT------CCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC-----
T ss_pred HHHHHHHcCCHHHHHHHHHcC------CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhc
Confidence 999999999999999999865 67899999999999999999999999999999876 578999999865
Q ss_pred hH
Q psy8454 671 HV 672 (936)
Q Consensus 671 ~~ 672 (936)
+.
T Consensus 297 g~ 298 (301)
T 2b0o_E 297 VI 298 (301)
T ss_dssp --
T ss_pred CC
Confidence 43
No 104
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.81 E-value=6.8e-20 Score=169.46 Aligned_cols=111 Identities=30% Similarity=0.338 Sum_probs=84.1
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHc
Q psy8454 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNN 598 (936)
Q Consensus 519 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~ 598 (936)
+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~ 83 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE 83 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence 34567888888888888888888888888888887888888888888888888888888888777777777777777777
Q ss_pred CcHHHHHHHHhcccccccccCcccccCCCChHHHHHH
Q psy8454 599 GHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAA 635 (936)
Q Consensus 599 g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~ 635 (936)
|+.+++++|++++ ++++.+|..|.|||++|+
T Consensus 84 ~~~~~v~~Ll~~g------a~~~~~~~~g~t~l~~A~ 114 (123)
T 3aaa_C 84 GHVSCVKLLLSKG------ADKTVKGPDGLTAFEATD 114 (123)
T ss_dssp TCHHHHHHHHHTT------CCTTCCCTTSCCHHHHCC
T ss_pred CCHHHHHHHHHcC------CCCCCcCCCCCCHHHHhC
Confidence 7777777777654 456677777777777773
No 105
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.80 E-value=3.4e-20 Score=191.10 Aligned_cols=137 Identities=23% Similarity=0.263 Sum_probs=116.2
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhC-CCCCCcCCCCCCcHHHHHH
Q psy8454 518 MDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHS-GASINLTDNEGNTALHLAT 596 (936)
Q Consensus 518 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~-g~~~~~~d~~g~t~L~~A~ 596 (936)
.+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+
T Consensus 69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~ 148 (222)
T 3ehr_A 69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAA 148 (222)
T ss_dssp HEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHH
T ss_pred cccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCC
Q psy8454 597 NNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRK 660 (936)
Q Consensus 597 ~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g 660 (936)
..|+.+++++|+++| ++++.+|..|.|||++|+..|+.++++.|++.|+.....+..+
T Consensus 149 ~~~~~~~v~~Ll~~g------a~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~ 206 (222)
T 3ehr_A 149 WKGYADIVQLLLAKG------ARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED 206 (222)
T ss_dssp HHTCHHHHHHHHHHT------CCSCCCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred HcCCHHHHHHHHHcC------CCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence 999999999999865 6789999999999999999999999999999999877665443
No 106
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.80 E-value=1.2e-19 Score=199.94 Aligned_cols=128 Identities=29% Similarity=0.301 Sum_probs=120.8
Q ss_pred CCCCCcHHHHHHHc-CCHHHHHHHHhCCCCcccccc-cCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHH
Q psy8454 804 NSDGYTALHIATSL-GHYDLVRLLINYRADINIVTR-VKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHY 881 (936)
Q Consensus 804 d~~g~t~L~~Aa~~-g~~~~v~~LL~~g~~v~~~~~-~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~ 881 (936)
...+.|+||.|+.. |+.++++.|+++|++++..+. ..|.||||+|+..|+.++|++|+++| +++|.+|..|+||||+
T Consensus 196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~G-advn~~d~~G~TpLh~ 274 (368)
T 3jue_A 196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNG-ANVNQADSAGRGPLHH 274 (368)
T ss_dssp -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHH
T ss_pred cCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCCCCCCCCCHHHH
Confidence 44667999999999 999999999999999998773 68999999999999999999999998 9999999999999999
Q ss_pred HHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCC
Q psy8454 882 AAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAP 932 (936)
Q Consensus 882 A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~ 932 (936)
|+..|+.++|++|+++||+++.+|..|.||||+|+..|+.+++++|+..+.
T Consensus 275 A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~ 325 (368)
T 3jue_A 275 ATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKM 325 (368)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999987653
No 107
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.80 E-value=1.5e-19 Score=209.56 Aligned_cols=126 Identities=25% Similarity=0.264 Sum_probs=118.8
Q ss_pred CcHHHHHHHcCCHHHHHHHHhCCCCcccc------cccCCCcHHHHHHh---CCCHHHHHHHHhcCCCCCCCCCCCCCcH
Q psy8454 808 YTALHIATSLGHYDLVRLLINYRADINIV------TRVKQLTPLHIACQ---NNNLSIVRLLLAAKQCNVNAQDYRGNTA 878 (936)
Q Consensus 808 ~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~------~~~~g~TpLh~A~~---~g~~~iv~~LL~~g~~dvn~~d~~g~Tp 878 (936)
.+.||.|+..|+.++++.|+++|++++.. + ..|.||||+||. .|+.++|++|+++| +|+|.+|..|+||
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~-~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~g-a~vn~~d~~g~Tp 210 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQ-APEELVLHLAVKVANQASLPLVDFIIQNG-GHLDAKAADGNTA 210 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSC-CSCBCHHHHHHHTCCTTTHHHHHHHHHHS-CCTTCCCSSSCCH
T ss_pred HHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccc-cccchHHHHHHHhcccccHHHHHHHHHcC-CCCCccCCCCCcH
Confidence 47899999999999999999999999977 5 789999999976 99999999999999 9999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCCCcC
Q psy8454 879 LHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPFVL 935 (936)
Q Consensus 879 L~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~~~ 935 (936)
||+|+..|+.++|++|+++||+++++|..|.||||+|+..|+.+++++|+++|+.+.
T Consensus 211 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 267 (497)
T 3lvq_E 211 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTF 267 (497)
T ss_dssp HHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC---
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999999999999999999999998753
No 108
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.80 E-value=2.4e-19 Score=178.60 Aligned_cols=139 Identities=29% Similarity=0.381 Sum_probs=121.9
Q ss_pred CCChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcC
Q psy8454 454 ISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYG 533 (936)
Q Consensus 454 ~~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g 533 (936)
..+.++|+.|+..|+.++++.|++ +.+ ++.++..|.||||+|+..|
T Consensus 42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~---------------------------------~~~~d~~g~t~L~~A~~~~ 87 (183)
T 3deo_A 42 SEYETPWWTAARKADEQALSQLLE-DRD---------------------------------VDAVDENGRTALLFVAGLG 87 (183)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTT-TSC---------------------------------TTCCCTTSCCHHHHHHHHT
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHh-cCC---------------------------------CCCcCCCCCCHHHHHHHcC
Confidence 356789999999999999999998 543 2336788999999999999
Q ss_pred CHHHHHHHHhcCCCCCCCC-CCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhccc
Q psy8454 534 RIKVVDLVLELGADTNSQD-LCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNE 612 (936)
Q Consensus 534 ~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~ 612 (936)
+.+++++|+++|++++.++ ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++
T Consensus 88 ~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~------------ 155 (183)
T 3deo_A 88 SDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK------------ 155 (183)
T ss_dssp CHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHH------------
T ss_pred CHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhcc------------
Confidence 9999999999999999888 889999999999999999999999999999999999999999986322
Q ss_pred ccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHC
Q psy8454 613 QEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDH 649 (936)
Q Consensus 613 ~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ 649 (936)
...+.++|++|++.|+.+++++|.++
T Consensus 156 -----------~~~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 156 -----------TTPKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp -----------TCCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred -----------CcccccHHHHHHHcCHHHHHHHHHHh
Confidence 13567899999999999999999764
No 109
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.80 E-value=1e-18 Score=185.97 Aligned_cols=98 Identities=26% Similarity=0.340 Sum_probs=93.7
Q ss_pred ccCCCCCCcHHHHHHHc---CCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCc
Q psy8454 801 NICNSDGYTALHIATSL---GHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNT 877 (936)
Q Consensus 801 n~~d~~g~t~L~~Aa~~---g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~T 877 (936)
+..+..|.||||+|+.. |+.+++++|+++|++++..+ ..|.||||+|+..|+.++|++|+++| +|++.+|..|.|
T Consensus 163 ~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d-~~g~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~g~t 240 (278)
T 1dcq_A 163 ANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQT-GKGSTALHYCCLTDNAECLKLLLRGK-ASIEIANESGET 240 (278)
T ss_dssp SSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCC-TTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCC
T ss_pred cccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccC-CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCccCCCCC
Confidence 44577899999999999 89999999999999999999 89999999999999999999999998 999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCC
Q psy8454 878 ALHYAAINNHTNLATLLLKSGAR 900 (936)
Q Consensus 878 pL~~A~~~g~~~iv~~LL~~Ga~ 900 (936)
|||+|+..|+.++|++|+++|++
T Consensus 241 pL~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 241 PLDIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999999999999999999985
No 110
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.79 E-value=3e-19 Score=186.65 Aligned_cols=142 Identities=29% Similarity=0.369 Sum_probs=126.8
Q ss_pred CCChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcC
Q psy8454 454 ISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYG 533 (936)
Q Consensus 454 ~~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g 533 (936)
..+.++|+.|++.|+.++|+.|++ +.+. +.++..|.||||+|+..|
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~---------------------------------~~~d~~g~t~L~~A~~~g 88 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE-DRDV---------------------------------DAVDENGRTALLFVAGLG 88 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT-TCCT---------------------------------TCBCTTSCBHHHHHHHHT
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc-CCCC---------------------------------CCcCCCCCCHHHHHHHCC
Confidence 357789999999999999999998 5433 336788999999999999
Q ss_pred CHHHHHHHHhcCCCCCCCC-CCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhccc
Q psy8454 534 RIKVVDLVLELGADTNSQD-LCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNE 612 (936)
Q Consensus 534 ~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~ 612 (936)
+.+++++|+++|++++.++ ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. .
T Consensus 89 ~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~---------~---- 155 (244)
T 3ui2_A 89 SDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI---------L---- 155 (244)
T ss_dssp CHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH---------H----
T ss_pred CHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHH---------H----
Confidence 9999999999999999998 7899999999999999999999999999999999999999999852 1
Q ss_pred ccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCC
Q psy8454 613 QEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGAN 652 (936)
Q Consensus 613 ~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~ 652 (936)
....+.|||++|++.|+.+++++|++.+.+
T Consensus 156 ----------~~~~~~~~l~~a~~~g~~~iv~~L~~~~~~ 185 (244)
T 3ui2_A 156 ----------KTTPKGNPMQFGRRIGLEKVINVLEGQVFE 185 (244)
T ss_dssp ----------TTCCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred ----------hccCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence 124688999999999999999999987544
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.79 E-value=1.1e-19 Score=165.96 Aligned_cols=109 Identities=36% Similarity=0.450 Sum_probs=102.9
Q ss_pred cCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHH
Q psy8454 802 ICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHY 881 (936)
Q Consensus 802 ~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~ 881 (936)
.+|.+|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++| ++++.+|..|+||||+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d-~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~d~~g~tpl~~ 81 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARS-KDGNTPLHLAAKNGHAEIVKLLLAKG-ADVNARSKDGNTPEHL 81 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCC-SSSCCTTHHHHTTTCHHHHHHHTTTT-CCTTCCCTTCCCTTHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC-CCCCCHHHHHHHcCcHHHHHHHHHcC-CCCcccCCCCCCHHHH
Confidence 458899999999999999999999999999999998 89999999999999999999999998 9999999999999999
Q ss_pred HHHcCCHHHHHHHHHcCCCCcCcccCCCcHH
Q psy8454 882 AAINNHTNLATLLLKSGARPQIKNHYGQTCL 912 (936)
Q Consensus 882 A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L 912 (936)
|+..|+.+++++|+++||+++.++..|.||-
T Consensus 82 A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 82 AKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp HHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred HHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 9999999999999999999999999999874
No 112
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.77 E-value=1e-18 Score=202.51 Aligned_cols=140 Identities=22% Similarity=0.239 Sum_probs=114.7
Q ss_pred HHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHH---c
Q psy8454 741 EQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATS---L 817 (936)
Q Consensus 741 ~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~---~ 817 (936)
..|+.|+..|+.+.++.|++.+.+.+.... ....+..|.||||+||. .
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~-----------------------------~~~~~~~g~t~Lh~A~~~a~~ 184 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFANGQDFGQPLP-----------------------------GPDAQAPEELVLHLAVKVANQ 184 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCSSSCBC-----------------------------CSSSCCSCBCHHHHHHHTCCT
T ss_pred HHHHHHHhccCHHHHHHHHhhcccccCCCC-----------------------------CcccccccchHHHHHHHhccc
Confidence 679999999999999999976644321100 11227899999999976 8
Q ss_pred CCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q psy8454 818 GHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKS 897 (936)
Q Consensus 818 g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~ 897 (936)
|+.+++++|+++|+++|..+ ..|+||||+||..|+.++|++|+++| +|+|.+|..|+||||+|+..|+.+++++|+++
T Consensus 185 g~~~~v~~Ll~~ga~vn~~d-~~g~TpLh~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ 262 (497)
T 3lvq_E 185 ASLPLVDFIIQNGGHLDAKA-ADGNTALHYAALYNQPDCLKLLLKGR-ALVGTVNEAGETALDIARKKHHKECEELLEQA 262 (497)
T ss_dssp TTHHHHHHHHHHSCCTTCCC-SSSCCHHHHHTTTTCHHHHHHHHHTC-CCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred ccHHHHHHHHHcCCCCCccC-CCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence 99999999999999999999 89999999999999999999999999 99999999999999999999999999999999
Q ss_pred CCCCcCcccCCCcHHHHHHH
Q psy8454 898 GARPQIKNHYGQTCLHMAQQ 917 (936)
Q Consensus 898 Ga~~~~~d~~g~T~L~~A~~ 917 (936)
||+++.. |+|.+..
T Consensus 263 ga~~~~~------~~h~~~~ 276 (497)
T 3lvq_E 263 QAGTFAF------PLHVDYS 276 (497)
T ss_dssp CC------------------
T ss_pred CCCCCCC------cceeecc
Confidence 9998874 5555543
No 113
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.75 E-value=3.8e-18 Score=187.82 Aligned_cols=145 Identities=23% Similarity=0.193 Sum_probs=120.1
Q ss_pred CCCCCCcHHHHHHHc-CCHHHHHHHHhcCCCCCCCC--CCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHH
Q psy8454 518 MDDRGFTVLHVAALY-GRIKVVDLVLELGADTNSQD--LCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHL 594 (936)
Q Consensus 518 ~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~~--~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~ 594 (936)
....+.|+||.|+.. |+.++++.|+++|+++|..+ ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus 195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~ 274 (368)
T 3jue_A 195 GSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHH 274 (368)
T ss_dssp --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence 445678999999999 99999999999999999998 899999999999999999999999999999999999999999
Q ss_pred HHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCC---CCCcccCCCChhhhhh
Q psy8454 595 ATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGAN---PTLENKRKVTPLQNAN 668 (936)
Q Consensus 595 A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~---~~~~d~~g~t~l~~a~ 668 (936)
|+..|+.+++++|+++| ++++..|..|.||||+|+..|+.+++++|+..+.. ....+..+.|+++.+.
T Consensus 275 A~~~g~~~~v~~LL~~G------ad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~ 345 (368)
T 3jue_A 275 ATILGHTGLACLFLKRG------ADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFR 345 (368)
T ss_dssp HHHHTCHHHHHHHHHTT------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC--------------------
T ss_pred HHHcCcHHHHHHHHHCc------CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHH
Confidence 99999999999999865 67899999999999999999999999999987643 3345556677776654
No 114
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.71 E-value=1.5e-17 Score=151.50 Aligned_cols=107 Identities=38% Similarity=0.489 Sum_probs=91.2
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHH
Q psy8454 518 MDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATN 597 (936)
Q Consensus 518 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~ 597 (936)
+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+.
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~ 84 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK 84 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHT
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence 67788899999999999999999998888888888888999999999999999999998888888888888888888888
Q ss_pred cCcHHHHHHHHhcccccccccCcccccCCCChH
Q psy8454 598 NGHETCVKALIYFNEQEVLNLNINAVNNQGDSP 630 (936)
Q Consensus 598 ~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~ 630 (936)
.|+.+++++|+++| ++++..+..|.||
T Consensus 85 ~~~~~~~~~Ll~~g------a~~n~~~~~~~~~ 111 (115)
T 2l6b_A 85 NGHHEIVKLLDAKG------ADVNARSWGSSHH 111 (115)
T ss_dssp TTCHHHHHHHHTTS------SSHHHHSCCCC--
T ss_pred CCCHHHHHHHHHcC------CCCCcCCcccccc
Confidence 88888888888765 5677777777776
No 115
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.69 E-value=6.3e-17 Score=146.05 Aligned_cols=92 Identities=37% Similarity=0.447 Sum_probs=47.0
Q ss_pred ccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHH
Q psy8454 801 NICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALH 880 (936)
Q Consensus 801 n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~ 880 (936)
...+.+|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+||..|+.+++++|+++| ++++.+|..|+||||
T Consensus 18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d-~~g~tpLh~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~ 95 (110)
T 2zgd_A 18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKD-KNGSTPLHLAARNGHLEVVKLLLEAG-ADVXAQDKFGKTAFD 95 (110)
T ss_dssp ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCC-TTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHH
T ss_pred cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccccCCCcHHH
Confidence 3345555555555555555555555555555555554 45555555555555555555555554 555555555555555
Q ss_pred HHHHcCCHHHHHHH
Q psy8454 881 YAAINNHTNLATLL 894 (936)
Q Consensus 881 ~A~~~g~~~iv~~L 894 (936)
+|+..|+.+++++|
T Consensus 96 ~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 96 ISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHTCHHHHHHH
T ss_pred HHHHcCCHHHHHHh
Confidence 55555555555544
No 116
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.67 E-value=1.6e-16 Score=143.40 Aligned_cols=88 Identities=30% Similarity=0.418 Sum_probs=86.2
Q ss_pred cCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHc
Q psy8454 839 VKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918 (936)
Q Consensus 839 ~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~ 918 (936)
..|.||||+||..|+.+++++|++.| +++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus 22 ~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~ 100 (110)
T 2zgd_A 22 SDLGKKLLEAARAGQDDEVRILMANG-ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDN 100 (110)
T ss_dssp CCHHHHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred CccchHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHc
Confidence 78899999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHH
Q psy8454 919 TSLSLVRVL 927 (936)
Q Consensus 919 g~~~iv~~L 927 (936)
|+.+++++|
T Consensus 101 ~~~~~~~~L 109 (110)
T 2zgd_A 101 GNEDLAEIL 109 (110)
T ss_dssp TCHHHHHHH
T ss_pred CCHHHHHHh
Confidence 999999987
No 117
>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter sphaeroides} PDB: 1w7e_A
Probab=44.07 E-value=20 Score=32.11 Aligned_cols=98 Identities=13% Similarity=0.177 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHh-hcCeEEEeeCCCCCCCCC-------C---C----HHhHhhccccC---CCCC-cccccccc
Q psy8454 39 IFFKALKTEHGELFEKAT-QDGWIICIPRVCSLPKYA-------L---T----YEDFFNHILIP---SEEL-PETHFRTL 99 (936)
Q Consensus 39 ~f~~~l~~~~~~l~~~~~-~~~~illvP~~~sl~~~~-------~---~----~~~~~sHil~p---~~~~-~~~~~~tl 99 (936)
-|.+++++. .+.+.+. ...+.|++|.-+.+.... . + .+.+.-||+.. +... ....+.|+
T Consensus 17 ~f~~~l~~a--gl~~~L~~~~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~~~l~~lL~yHvv~~~~~~~~l~~~~~~~tl 94 (137)
T 1w7d_A 17 TLLTAAEAA--GLVDTLKGDGPFTVFAPTDAAFAALPEGTVEDLLKPENKEKLTEILTYHVVPGEVMSSDLTEGMTAETV 94 (137)
T ss_dssp TTTHHHHHT--TTHHHHTSSSCEEEECCCHHHHTTSTTTHHHHTTSHHHHHHHHHHHHHHEEESCCCTTTSCSSEEEECT
T ss_pred HHHHHHHHc--CCHHHHcCCCCEEEEEECHHHHHHcCHhHHHHHhCcCCHHHHHHHHHhhEeCcEEcHHHhcCCCeeecc
Confidence 466777653 3666663 468999999775554332 1 2 23466688752 2222 23358999
Q ss_pred CCCceEEe--cceEEeccCCCCceeeeeeeeeccccCCCceEEEEEeccCCCc
Q psy8454 100 NDQEIRIC--NRIISIEADGGSTFSTQILFEETYYTDEMLKYKVLCIDNPLDI 150 (936)
Q Consensus 100 ng~~v~i~--~~~i~~~~gf~~~~~~~il~~e~~Y~~~~~~~~i~~I~~pL~~ 150 (936)
+|+.+.|. ++ |+.+ | ++|.........+ .|..||+.|.+
T Consensus 95 ~G~~l~v~~~~g-v~vn-~------a~v~~~di~~~NG----vIHvID~VL~P 135 (137)
T 1w7d_A 95 EGGALTVTLEGG-PKVN-G------VSISQPDVDASNG----VIHVIDGVLMP 135 (137)
T ss_dssp TSCEEEEECTTS-CEET-T------EECSBCCCBCSSS----EEEBCSSCCSS
T ss_pred CCceEEEEecCC-EEEe-C------cEEEECCeecCCe----EEEEECeeeCC
Confidence 99998884 34 4443 2 5666544433323 58889998875
No 118
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=40.19 E-value=1.1e+02 Score=28.54 Aligned_cols=134 Identities=10% Similarity=-0.002 Sum_probs=86.6
Q ss_pred CCChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcC
Q psy8454 454 ISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYG 533 (936)
Q Consensus 454 ~~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g 533 (936)
.++.+.+-.|+..|+++....+.+...+... -...-..|...|
T Consensus 6 ~D~~~rF~LAL~lg~l~~A~e~a~~l~~~~~-------------------------------------Wk~Lg~~AL~~g 48 (177)
T 3mkq_B 6 QDPHIRFDLALEYGNLDAALDEAKKLNDSIT-------------------------------------WERLIQEALAQG 48 (177)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHCCHHH-------------------------------------HHHHHHHHHHTT
T ss_pred CChHHHHHHHHhcCCHHHHHHHHHHhCCHHH-------------------------------------HHHHHHHHHHcC
Confidence 4566788899999999999888776422100 135666788999
Q ss_pred CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCc-HHHHHHHHhccc
Q psy8454 534 RIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGH-ETCVKALIYFNE 612 (936)
Q Consensus 534 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~-~eiv~~Ll~~~~ 612 (936)
++++++.-..+--|+. ..+.+....|+.+-++.|.+. -....+-+.+++.+...|+ .++++.|.+.+.
T Consensus 49 n~~lAe~cy~~~~D~~-------~L~~Ly~~tg~~e~L~kla~i----A~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 49 NASLAEMIYQTQHSFD-------KLSFLYLVTGDVNKLSKMQNI----AQTREDFGSMLLNTFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp CHHHHHHHHHHTTCHH-------HHHHHHHHHTCHHHHHHHHHH----HHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHhCCHH-------HHHHHHHHhCCHHHHHHHHHH----HHHCccHHHHHHHHHHcCCHHHHHHHHHHCCC
Confidence 9999988776543332 244555557777766655321 1111233457777877777 568888876431
Q ss_pred ccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHC
Q psy8454 613 QEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDH 649 (936)
Q Consensus 613 ~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ 649 (936)
..-+...|..+|..++.+.+++.
T Consensus 118 --------------~~eA~~~A~t~g~~~~a~~~~~~ 140 (177)
T 3mkq_B 118 --------------LPLAYAVAKANGDEAAASAFLEQ 140 (177)
T ss_dssp --------------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --------------hHHHHHHHHHcCcHHHHHHHHHH
Confidence 11255666778999999888863
No 119
>2vxp_A Transforming growth factor-beta-induced protein IG-H3; RGD-containing collagen-associated protein, FAS1, BIGH3, vision, amyloid, RGD-CAP, secreted; 2.5A {Homo sapiens} PDB: 1x3b_A
Probab=39.62 E-value=36 Score=30.10 Aligned_cols=97 Identities=15% Similarity=0.166 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHh-hcCeEEEeeCCCCCCCCC--------CCH----HhHhhccccC---CCC-CccccccccCC
Q psy8454 39 IFFKALKTEHGELFEKAT-QDGWIICIPRVCSLPKYA--------LTY----EDFFNHILIP---SEE-LPETHFRTLND 101 (936)
Q Consensus 39 ~f~~~l~~~~~~l~~~~~-~~~~illvP~~~sl~~~~--------~~~----~~~~sHil~p---~~~-~~~~~~~tlng 101 (936)
-|.+++++. .+.+.+. ...+.|++|.-+.+.... -+. +.+.-||+.. +.. .....+.|++|
T Consensus 16 ~~~~~l~~a--gl~~~L~~~~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~l~~iL~yHvv~~~~~~~~l~~~~~~~tl~G 93 (132)
T 2vxp_A 16 MLVAAIQSA--GLTETLNREGVYTVFAPTNEAFRALPPRERSRLLGDAKELANILKYHIGDEILVSGGIGALVRLKSLQG 93 (132)
T ss_dssp HHHHHHHHH--TCHHHHHSSCCEEEEEECHHHHHHSCHHHHHHHHTCHHHHHHHHHHSBBSSCCCSTTCSSCEEEEBTTS
T ss_pred HHHHHHHHc--CcHHHHcCCCCEEEEeECHHHHHhhCHHHHHHHhcCHHHHHHHHHhcCcCceeehhhccCCceEecCCC
Confidence 467777653 3666663 567999999765553221 122 3466688641 111 12346899999
Q ss_pred CceEE--ecceEEeccCCCCceeeeeeeeeccccCCCceEEEEEeccCC
Q psy8454 102 QEIRI--CNRIISIEADGGSTFSTQILFEETYYTDEMLKYKVLCIDNPL 148 (936)
Q Consensus 102 ~~v~i--~~~~i~~~~gf~~~~~~~il~~e~~Y~~~~~~~~i~~I~~pL 148 (936)
+.+.| .++.++.+ | ++|........ ++ .|.-||+.|
T Consensus 94 ~~l~v~~~~~~v~vn-~------a~v~~~di~a~-NG---vIHvID~VL 131 (132)
T 2vxp_A 94 DKLEVSLKNNVVSVN-K------EPVAEPDIMAT-NG---VVHVITNVL 131 (132)
T ss_dssp SEEEEEEETTEEEES-S------CBEEEEEEEET-TE---EEEEESSCC
T ss_pred CEEEEEEeCCEEEEe-c------cEEEEcceecC-CE---EEEEECcEe
Confidence 98877 34555554 2 45554443333 22 577777765
No 120
>1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin domain, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.118.1.1
Probab=24.06 E-value=23 Score=32.81 Aligned_cols=100 Identities=14% Similarity=0.189 Sum_probs=58.5
Q ss_pred HHHHHHHH-H--HHHHHHHHhhcCeEEEeeCCCCCCCCC------------CCHHhHhhcccc---CCCCCccccccccC
Q psy8454 39 IFFKALKT-E--HGELFEKATQDGWIICIPRVCSLPKYA------------LTYEDFFNHILI---PSEELPETHFRTLN 100 (936)
Q Consensus 39 ~f~~~l~~-~--~~~l~~~~~~~~~illvP~~~sl~~~~------------~~~~~~~sHil~---p~~~~~~~~~~tln 100 (936)
-|.++++. + ...+.+.+...++.|++|.-+.+.... .=.+.+.-||+. .+.... ..+.|++
T Consensus 42 ~f~~~l~~~~~~~agl~~~L~~~g~TvFAPtn~AF~~l~~~~~~~L~~~~~~L~~iL~yHvv~g~~~~~~l~-g~~~Tl~ 120 (163)
T 1nyo_A 42 TLTAALSGQLNPQVNLVDTLNSGQYTVFAPTNAAFSKLPASTIDELKTNSSLLTSILTYHVVAGQTSPANVV-GTRQTLQ 120 (163)
T ss_dssp HHHHHHHSSSCTTCCCHHHHTSSSEEECCBCHHHHHHSCHHHHHHHTTCSSHHHHHHHHTEEESCCCTTTSC-EEEECTT
T ss_pred HHHHHHHhccccccCHHHHhCCCCcEEEEECHHHHHhccHHHHHHHhcCHHHHHHHHHhceECCEEcHHHhC-CccccCC
Confidence 36666661 0 113666675555999999764443221 123467778886 223333 5789999
Q ss_pred CCceEEe--cceEEeccCCCCceeeeeeeeeccccCCCceEEEEEeccCCCc
Q psy8454 101 DQEIRIC--NRIISIEADGGSTFSTQILFEETYYTDEMLKYKVLCIDNPLDI 150 (936)
Q Consensus 101 g~~v~i~--~~~i~~~~gf~~~~~~~il~~e~~Y~~~~~~~~i~~I~~pL~~ 150 (936)
|+.+.|. ++.|+.+. ++|...... ..+ =.|.-||+.|.+
T Consensus 121 G~~l~v~~~~~~v~vn~-------a~V~~~di~-a~N---GvIHvID~VL~P 161 (163)
T 1nyo_A 121 GASVTVTGQGNSLKVGN-------ADVVCGGVS-TAN---ATVYMIDSVLMP 161 (163)
T ss_dssp SSEEEEEECSSCEEETT-------EECSSBCCC-CSS---EEEBCBSSCCCC
T ss_pred CCEEEEEEECCEEEEec-------cEEEECceE-cCC---EEEEEECcEeCC
Confidence 9998884 34455441 456544332 122 368888888875
No 121
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=23.89 E-value=93 Score=34.73 Aligned_cols=100 Identities=12% Similarity=0.041 Sum_probs=48.6
Q ss_pred HHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHh----cCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH--
Q psy8454 821 DLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLA----AKQCNVNAQDYRGNTALHYAAINNHTNLATLL-- 894 (936)
Q Consensus 821 ~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~----~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~L-- 894 (936)
++++.+.+.|..++... -++.+...++.|+.+-+.-+++ .| ..++... -++.|...++.|+.+-+.-+
T Consensus 91 ~lf~~M~~~G~~Pd~~t---yn~lI~~~~~~g~~~~A~~l~~~M~~~g-~~Pd~~t--yn~lI~~~~~~g~~~~A~~l~~ 164 (501)
T 4g26_A 91 DIFKQMIVDKVVPNEAT---FTNGARLAVAKDDPEMAFDMVKQMKAFG-IQPRLRS--YGPALFGFCRKGDADKAYEVDA 164 (501)
T ss_dssp HHHHHHHHTTCCCCHHH---HHHHHHHHHHHTCHHHHHHHHHHHHHTT-CCCCHHH--HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCccce--ehHHHHHHHHCCCHHHHHHHHH
Confidence 45566666676665443 1134555566677665544443 23 3333221 11234445566766633333
Q ss_pred --HHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHh
Q psy8454 895 --LKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLT 928 (936)
Q Consensus 895 --L~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll 928 (936)
.+.|..++... -.+.+...++.|+.+-+.-|+
T Consensus 165 ~M~~~G~~Pd~~t--y~~Li~~~~~~g~~d~A~~ll 198 (501)
T 4g26_A 165 HMVESEVVPEEPE--LAALLKVSMDTKNADKVYKTL 198 (501)
T ss_dssp HHHHTTCCCCHHH--HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhcCCCCCHHH--HHHHHHHHhhCCCHHHHHHHH
Confidence 34566555432 123455555666655444443
Done!